Query 048228
Match_columns 629
No_of_seqs 687 out of 4050
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 13:04:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 8.4E-60 2.9E-64 510.8 38.7 366 16-452 11-387 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 3.9E-57 1.3E-61 489.9 37.5 341 16-425 44-386 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 2.5E-48 8.7E-53 406.0 29.3 300 18-369 24-330 (337)
4 4g8k_A 2-5A-dependent ribonucl 100.0 3.1E-47 1.1E-51 397.7 30.1 295 62-412 23-330 (337)
5 1wdy_A 2-5A-dependent ribonucl 100.0 3.5E-44 1.2E-48 363.6 27.8 273 63-413 4-283 (285)
6 3utm_A Tankyrase-1; tankyrase, 100.0 6E-44 2.1E-48 373.4 26.3 309 18-408 23-334 (351)
7 1wdy_A 2-5A-dependent ribonucl 100.0 1.6E-43 5.5E-48 358.7 27.0 248 61-371 36-284 (285)
8 3utm_A Tankyrase-1; tankyrase, 100.0 1.4E-43 4.7E-48 370.6 22.8 296 62-423 22-320 (351)
9 2fo1_E LIN-12 protein; beta-ba 100.0 5.2E-44 1.8E-48 378.9 16.3 311 19-409 37-372 (373)
10 3d9h_A CDNA FLJ77766, highly s 100.0 5.3E-42 1.8E-46 349.8 20.5 225 130-410 54-281 (285)
11 2fo1_E LIN-12 protein; beta-ba 100.0 1E-42 3.4E-47 369.1 13.9 283 18-366 65-372 (373)
12 3d9h_A CDNA FLJ77766, highly s 100.0 5.6E-41 1.9E-45 342.2 21.8 261 60-368 11-282 (285)
13 3ljn_A Hypothetical protein; a 100.0 1.6E-42 5.4E-47 366.0 9.5 271 90-410 9-316 (364)
14 2xai_A ASB-9, ankyrin repeat a 100.0 4.5E-41 1.5E-45 338.2 18.1 237 101-384 3-249 (261)
15 1oy3_D Transcription factor in 100.0 3E-40 1E-44 334.8 20.8 250 94-384 2-269 (282)
16 2xai_A ASB-9, ankyrin repeat a 100.0 1.2E-40 3.9E-45 335.3 16.2 243 62-351 1-253 (261)
17 1yyh_A HN1;, notch 1, ankyrin 100.0 4.8E-40 1.6E-44 329.1 20.1 229 92-362 1-245 (253)
18 3ljn_A Hypothetical protein; a 100.0 3.5E-41 1.2E-45 355.7 8.7 276 60-367 16-316 (364)
19 3b7b_A Euchromatic histone-lys 100.0 1.2E-38 4.2E-43 314.9 23.4 231 92-361 2-235 (237)
20 1yyh_A HN1;, notch 1, ankyrin 100.0 1.7E-39 6E-44 325.0 16.3 229 128-407 3-247 (253)
21 1oy3_D Transcription factor in 100.0 7.4E-39 2.5E-43 324.6 19.3 250 128-425 2-267 (282)
22 3aji_A 26S proteasome non-ATPa 100.0 1.8E-38 6.2E-43 312.4 18.6 226 99-366 4-231 (231)
23 1k1a_A B-cell lymphoma 3-encod 100.0 1.3E-38 4.5E-43 315.1 16.5 227 95-364 3-240 (241)
24 4b93_B Ankyrin repeat domain-c 100.0 2.4E-39 8.1E-44 327.1 11.3 232 96-367 6-246 (269)
25 1k1a_A B-cell lymphoma 3-encod 100.0 1.5E-38 5.2E-43 314.7 16.2 228 128-407 2-240 (241)
26 3b7b_A Euchromatic histone-lys 100.0 1.6E-37 5.4E-42 306.9 22.3 215 128-384 4-221 (237)
27 4b93_B Ankyrin repeat domain-c 100.0 7.2E-39 2.5E-43 323.6 11.6 220 130-383 6-228 (269)
28 1s70_B 130 kDa myosin-binding 100.0 2.4E-38 8.2E-43 324.2 14.6 247 99-406 38-287 (299)
29 3aji_A 26S proteasome non-ATPa 100.0 1.1E-37 3.6E-42 306.9 18.4 227 132-409 3-231 (231)
30 2dzn_A Probable 26S proteasome 100.0 4.1E-37 1.4E-41 301.9 19.4 212 101-346 2-218 (228)
31 3kea_A K1L; tropism, ANK repea 100.0 7.9E-38 2.7E-42 318.9 13.0 183 190-413 64-251 (285)
32 3eu9_A Huntingtin-interacting 100.0 1.1E-36 3.7E-41 300.5 20.4 233 94-367 2-237 (240)
33 3kea_A K1L; tropism, ANK repea 100.0 2.7E-37 9.4E-42 314.9 16.3 245 73-376 9-257 (285)
34 3eu9_A Huntingtin-interacting 100.0 1.5E-36 5.2E-41 299.5 20.9 232 129-410 3-237 (240)
35 2dzn_A Probable 26S proteasome 100.0 9.1E-37 3.1E-41 299.4 18.5 218 135-405 2-227 (228)
36 2f8y_A Notch homolog 1, transl 100.0 1.6E-36 5.5E-41 296.8 15.9 216 146-411 1-219 (223)
37 2f8y_A Notch homolog 1, transl 100.0 5.6E-36 1.9E-40 292.9 17.9 214 112-367 2-218 (223)
38 1sw6_A Regulatory protein SWI6 100.0 9.2E-38 3.2E-42 324.8 2.1 261 74-383 29-326 (327)
39 1s70_B 130 kDa myosin-binding 100.0 6E-36 2E-40 306.3 13.6 240 143-423 5-272 (299)
40 1sw6_A Regulatory protein SWI6 100.0 6.8E-37 2.3E-41 318.3 4.8 266 111-424 29-324 (327)
41 2rfa_A Transient receptor pote 100.0 1.7E-34 5.7E-39 284.4 17.3 198 187-412 2-226 (232)
42 1ikn_D Protein (I-kappa-B-alph 100.0 2.1E-35 7.3E-40 291.8 8.7 213 184-424 4-227 (236)
43 1ikn_D Protein (I-kappa-B-alph 100.0 6.1E-35 2.1E-39 288.5 9.8 218 96-380 3-226 (236)
44 2rfa_A Transient receptor pote 100.0 1.9E-33 6.5E-38 276.8 18.2 216 100-371 2-228 (232)
45 2pnn_A Transient receptor pote 100.0 9.1E-34 3.1E-38 286.6 12.5 239 91-377 3-271 (273)
46 3hra_A Ankyrin repeat family p 100.0 1.2E-32 4.2E-37 264.6 17.9 193 187-406 4-201 (201)
47 2etb_A Transient receptor pote 100.0 2.2E-33 7.5E-38 280.9 10.6 218 100-367 1-248 (256)
48 4gpm_A Engineered protein OR26 100.0 1.3E-32 4.5E-37 257.4 15.1 157 190-368 6-164 (169)
49 2pnn_A Transient receptor pote 100.0 2.3E-33 7.8E-38 283.7 10.4 212 183-420 8-271 (273)
50 2etb_A Transient receptor pote 100.0 6.1E-33 2.1E-37 277.7 12.1 198 188-411 2-249 (256)
51 3hra_A Ankyrin repeat family p 100.0 1.6E-31 5.4E-36 256.8 19.9 193 99-363 3-201 (201)
52 4gpm_A Engineered protein OR26 100.0 2.7E-31 9.1E-36 248.5 19.5 159 21-216 6-164 (169)
53 3jxi_A Vanilloid receptor-rela 100.0 5.8E-32 2E-36 271.1 8.5 222 98-367 2-252 (260)
54 3jxi_A Vanilloid receptor-rela 100.0 7.9E-32 2.7E-36 270.1 8.7 199 186-411 3-253 (260)
55 4hbd_A KN motif and ankyrin re 100.0 2.7E-30 9.4E-35 261.8 9.7 192 188-406 76-273 (276)
56 2aja_A Ankyrin repeat family p 100.0 6.7E-31 2.3E-35 276.8 3.2 272 20-350 66-363 (376)
57 2y1l_E Darpin-8.4; hydrolase-i 100.0 2.5E-28 8.5E-33 228.2 18.2 157 18-211 13-169 (169)
58 3v30_A DNA-binding protein rfx 100.0 3E-29 1E-33 234.9 11.2 167 189-376 3-171 (172)
59 3v30_A DNA-binding protein rfx 100.0 8.4E-29 2.9E-33 231.9 12.1 167 222-419 2-171 (172)
60 2rfm_A Putative ankyrin repeat 100.0 1.4E-28 4.7E-33 234.9 13.4 158 218-406 31-190 (192)
61 2vge_A RELA-associated inhibit 100.0 7.4E-32 2.5E-36 265.5 -9.8 192 152-384 1-199 (229)
62 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.3E-28 4.3E-33 228.1 12.1 155 188-365 5-162 (162)
63 2rfm_A Putative ankyrin repeat 100.0 7E-29 2.4E-33 236.9 10.1 159 183-363 30-190 (192)
64 2vge_A RELA-associated inhibit 100.0 1.3E-30 4.6E-35 256.5 -2.5 204 35-283 1-208 (229)
65 4hbd_A KN motif and ankyrin re 100.0 1.2E-28 3.9E-33 249.8 11.6 189 64-286 76-273 (276)
66 2aja_A Ankyrin repeat family p 100.0 1.3E-30 4.3E-35 274.8 -3.1 253 101-424 65-357 (376)
67 1ihb_A P18-INK4C(INK6), cyclin 100.0 3.1E-28 1.1E-32 225.5 13.2 156 221-408 4-162 (162)
68 2y1l_E Darpin-8.4; hydrolase-i 100.0 4.9E-28 1.7E-32 226.3 14.4 156 186-363 12-169 (169)
69 1ycs_B 53BP2, P53BP2; ankyrin 100.0 4.5E-30 1.6E-34 254.4 0.3 204 187-425 4-227 (239)
70 3v31_A Ankyrin repeat family A 99.9 1.5E-27 5.2E-32 222.2 16.1 160 19-215 3-162 (167)
71 3v31_A Ankyrin repeat family A 99.9 3.1E-28 1.1E-32 226.8 10.6 158 188-367 3-162 (167)
72 3f6q_A Integrin-linked protein 99.9 4.1E-28 1.4E-32 228.9 11.5 166 187-414 4-169 (179)
73 3f6q_A Integrin-linked protein 99.9 4.3E-28 1.5E-32 228.8 10.6 140 181-373 32-171 (179)
74 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.1E-28 3.8E-33 244.4 6.2 208 18-262 4-227 (239)
75 1awc_B Protein (GA binding pro 99.9 3.2E-27 1.1E-31 216.8 13.8 148 189-359 3-152 (153)
76 3twr_A Tankyrase-2; ankyrin re 99.9 9.2E-28 3.1E-32 223.2 10.2 161 184-407 4-164 (165)
77 1awc_B Protein (GA binding pro 99.9 3.3E-26 1.1E-30 210.0 18.5 150 20-207 3-152 (153)
78 3twr_A Tankyrase-2; ankyrin re 99.9 2E-27 6.8E-32 220.9 10.2 128 183-364 37-164 (165)
79 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.7E-26 5.8E-31 212.4 11.6 152 188-404 2-154 (156)
80 1bd8_A P19INK4D CDK4/6 inhibit 99.9 3.1E-26 1E-30 210.7 13.2 127 180-361 28-154 (156)
81 1d9s_A Cyclin-dependent kinase 99.9 1.6E-26 5.5E-31 207.8 9.4 134 243-408 2-136 (136)
82 1bi7_B P16INK4A, MTS1, multipl 99.9 5.1E-26 1.7E-30 209.6 8.4 144 246-421 5-149 (156)
83 3t8k_A Uncharacterized protein 99.9 2.7E-26 9.2E-31 218.0 4.6 170 188-413 6-184 (186)
84 3t8k_A Uncharacterized protein 99.9 7.1E-26 2.4E-30 215.1 4.0 141 185-370 35-184 (186)
85 1bi7_B P16INK4A, MTS1, multipl 99.9 2.9E-25 1E-29 204.5 6.2 143 183-379 7-150 (156)
86 2jab_A H10-2-G3; HER2, darpin, 99.9 5.7E-24 1.9E-28 191.0 13.1 133 9-159 4-136 (136)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 8.2E-24 2.8E-28 186.3 13.2 126 252-408 1-126 (126)
88 1d9s_A Cyclin-dependent kinase 99.9 1E-23 3.5E-28 189.4 12.4 127 16-161 9-136 (136)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 8.8E-24 3E-28 189.8 11.5 126 250-406 11-136 (136)
90 3c5r_A BARD-1, BRCA1-associate 99.9 2.5E-24 8.7E-29 193.5 6.0 134 243-408 1-134 (137)
91 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.5E-22 5.2E-27 178.1 15.6 125 19-161 2-126 (126)
92 3ehr_A Osteoclast-stimulating 99.9 3.4E-23 1.2E-27 202.2 6.3 168 218-416 21-206 (222)
93 3deo_A Signal recognition part 99.9 1E-21 3.6E-26 185.7 12.4 142 97-285 40-181 (183)
94 3c5r_A BARD-1, BRCA1-associate 99.9 1.3E-21 4.4E-26 175.7 12.3 116 292-424 2-117 (137)
95 3aaa_C Myotrophin, protein V-1 99.9 1.2E-21 4.2E-26 172.4 11.2 111 250-381 4-114 (123)
96 3ui2_A Signal recognition part 99.9 1.3E-21 4.5E-26 194.1 12.3 142 98-286 42-183 (244)
97 3ui2_A Signal recognition part 99.9 3.1E-22 1.1E-26 198.7 7.5 142 18-214 44-186 (244)
98 3deo_A Signal recognition part 99.9 1.1E-21 3.7E-26 185.6 9.6 138 18-210 43-181 (183)
99 2b0o_E UPLC1; arfgap, structur 99.8 1.6E-21 5.5E-26 199.6 10.3 146 189-384 152-297 (301)
100 3aaa_C Myotrophin, protein V-1 99.8 5.3E-21 1.8E-25 168.3 11.4 110 298-423 4-113 (123)
101 1dcq_A PYK2-associated protein 99.8 4.3E-21 1.5E-25 194.2 12.0 196 184-409 62-264 (278)
102 3ehr_A Osteoclast-stimulating 99.8 1.1E-21 3.7E-26 191.5 6.6 139 183-374 68-207 (222)
103 2b0o_E UPLC1; arfgap, structur 99.8 3.3E-21 1.1E-25 197.3 10.5 136 252-424 150-294 (301)
104 1dcq_A PYK2-associated protein 99.8 4.6E-20 1.6E-24 186.6 16.5 204 96-366 61-264 (278)
105 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.8E-20 6.1E-25 156.3 10.9 93 300-408 1-93 (93)
106 3jue_A Arfgap with coiled-coil 99.8 1E-20 3.4E-25 198.5 10.8 148 247-425 193-346 (368)
107 3lvq_E ARF-GAP with SH3 domain 99.8 2.1E-20 7.2E-25 205.1 12.4 128 254-412 133-269 (497)
108 3jue_A Arfgap with coiled-coil 99.8 5.3E-20 1.8E-24 192.9 12.8 129 16-160 196-325 (368)
109 1n0q_A 3ANK, 3 ankyrin repeats 99.8 6.5E-20 2.2E-24 152.8 9.6 93 252-365 1-93 (93)
110 3lvq_E ARF-GAP with SH3 domain 99.8 1.1E-19 3.7E-24 199.4 14.2 131 21-163 134-267 (497)
111 2l6b_A NR1C; ankyrin, consensu 99.8 2.7E-20 9.3E-25 161.6 7.3 110 295-420 3-112 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.8 2.4E-20 8E-25 162.0 6.0 109 248-377 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 4.9E-17 1.7E-21 139.9 9.9 93 294-402 17-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 1.7E-16 5.9E-21 136.5 9.7 89 16-120 21-109 (110)
115 4g26_A Pentatricopeptide repea 59.9 13 0.00044 39.7 6.7 97 90-209 99-199 (501)
116 1gp8_A Protein (scaffolding pr 31.8 30 0.001 22.3 2.2 19 104-122 16-34 (40)
117 3zrh_A Ubiquitin thioesterase 29.7 79 0.0027 32.2 6.1 64 25-123 28-91 (454)
118 4g26_A Pentatricopeptide repea 21.6 90 0.0031 33.0 5.3 111 32-163 90-209 (501)
119 1ehs_A STB, heat-stable entero 20.1 22 0.00074 22.9 -0.0 6 599-604 35-40 (48)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=8.4e-60 Score=510.77 Aligned_cols=366 Identities=21% Similarity=0.234 Sum_probs=342.4
Q ss_pred CCCCCcHHHHHHHCCCHHHHHHHHHhCCCchhhhhhhHhhhhccccCCCCcHHHHHHhcCcHHHHHHHhhcccccCCCcc
Q 048228 16 QWWYASPIDFAAANGHYELVKELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSSVARKLLHDCETKKGHNSL 95 (629)
Q Consensus 16 ~~~g~TpLh~Aa~~G~~~~v~~LL~~gad~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~~ 95 (629)
+..|.||||+||..|+.++|++|+++|++++..+ ..+.||||+|+..|+.+++++|++ +|++++
T Consensus 11 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~------------~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~ 74 (437)
T 1n11_A 11 GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSN------------VKVETPLHMAARAGHTEVAKYLLQ----NKAKVN 74 (437)
T ss_dssp ----CCHHHHHHHHTCHHHHHHHHHTTCCSCCSS------------SCCCCHHHHHHHHTCHHHHHHHHH----HTCCSS
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCC------------CCCCCHHHHHHHcCCHHHHHHHHh----CCCCCC
Confidence 4467899999999999999999999999998643 679999999999999999999999 899999
Q ss_pred cccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhh
Q 048228 96 IRAGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEK 175 (629)
Q Consensus 96 ~~d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~ 175 (629)
.++..|.||||+|+..|+.++|++|+++|++ ++..+..|.||||+| +..|+.+++++|+++|++++...
T Consensus 75 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A-~~~g~~~~v~~Ll~~~~~~~~~~--------- 143 (437)
T 1n11_A 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIA-AREGHVETVLALLEKEASQACMT--------- 143 (437)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHH-HHHTCHHHHHHHHHTTCCSCCCC---------
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHH-HHcCCHHHHHHHHhCCCCCcCCC---------
Confidence 9999999999999999999999999999988 578899999999998 77799999999999999877553
Q ss_pred hccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCC
Q 048228 176 LSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHG 253 (629)
Q Consensus 176 ~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g 253 (629)
..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..++.++ +|+..|++++..+..|
T Consensus 144 ----------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 212 (437)
T 1n11_A 144 ----------KKGFTPLHVAAKYGKVRVAELLLERDAHPNA-AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 212 (437)
T ss_dssp ----------TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTC
T ss_pred ----------CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCC
Confidence 3478999999999999999999999999995 99999999999999999999 8888999999999999
Q ss_pred CchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCC
Q 048228 254 DTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQD 333 (629)
Q Consensus 254 ~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d 333 (629)
.||||+|+. .++.+++++|++.| ++++..+..|.||||+|+..+ +.+++++|++ .|++++..|
T Consensus 213 ~t~L~~A~~----------~~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~-~~~~~~~~~ 275 (437)
T 1n11_A 213 YTPLHIAAK----------QNQVEVARSLLQYG-----GSANAESVQGVTPLHLAAQEG-HAEMVALLLS-KQANGNLGN 275 (437)
T ss_dssp CCHHHHHHH----------TTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHT-TTCCTTCCC
T ss_pred CCHHHHHHH----------cCCHHHHHHHHHcC-----CCCCCCCCCCCCHHHHHHHCC-CHHHHHHHHh-cCCCCCCCC
Confidence 999999999 59999999999999 669999999999999999999 9999999999 999999999
Q ss_pred CCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcCCCCcccc
Q 048228 334 GEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTGIENASDA 413 (629)
Q Consensus 334 ~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~d 413 (629)
..|.||||+|+..++.+ ++++|+++|+++|.+|..|+||||+|+..+ +.++|++|+++|+|++..|
T Consensus 276 ~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g----------~~~~v~~Ll~~gad~n~~~ 341 (437)
T 1n11_A 276 KSGLTPLHLVAQEGHVP----VADVLIKHGVMVDATTRMGYTPLHVASHYG----------NIKLVKFLLQHQADVNAKT 341 (437)
T ss_dssp TTCCCHHHHHHHHTCHH----HHHHHHHHTCCTTCCCSSCCCHHHHHHHSS----------CSHHHHHHHHTTCCTTCCC
T ss_pred CCCCCHHHHHHHcCCHH----HHHHHHhCCccCCCCCCCCCCHHHHHHHcC----------cHHHHHHHHhcCCCCCCCC
Confidence 99999999999999988 999999999999999999999999999987 6899999999999999999
Q ss_pred ccCCChhhhh---------hhhccCCCCCCCCCCCCCCCCcHHHHHHH
Q 048228 414 ICDAASVEYS---------SCLSEQSDFDSSNTPDDKKSSPIDYAARR 452 (629)
Q Consensus 414 ~~g~t~~~~a---------~~~~e~g~~~d~n~~~~~~~~~~~~aa~~ 452 (629)
..|+||+++| .+|++.|+ +++..|..|.+|+++|++.
T Consensus 342 ~~g~t~L~~A~~~g~~~iv~~Ll~~ga--~~~~~~~~g~t~l~~A~~~ 387 (437)
T 1n11_A 342 KLGYSPLHQAAQQGHTDIVTLLLKNGA--SPNEVSSDGTTPLAIAKRL 387 (437)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTC--CSCCCCSSSCCHHHHHHHT
T ss_pred CCCCCHHHHHHHCChHHHHHHHHHCcC--CCCCCCCCCCCHHHHHHHc
Confidence 9999999988 56889999 9999999999999999865
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.9e-57 Score=489.88 Aligned_cols=341 Identities=22% Similarity=0.254 Sum_probs=322.1
Q ss_pred CCCCCcHHHHHHHCCCHHHHHHHHHhCCCchhhhhhhHhhhhccccCCCCcHHHHHHhcCcHHHHHHHhhcccccCCCcc
Q 048228 16 QWWYASPIDFAAANGHYELVKELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSSVARKLLHDCETKKGHNSL 95 (629)
Q Consensus 16 ~~~g~TpLh~Aa~~G~~~~v~~LL~~gad~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~~ 95 (629)
+..|.||||+||..|+.++|++|+++|++++.++ .+|.||||+|+..|+.+++++|++ +|++++
T Consensus 44 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~------------~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~ 107 (437)
T 1n11_A 44 NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA------------KDDQTPLHCAARIGHTNMVKLLLE----NNANPN 107 (437)
T ss_dssp SSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCC------------TTSCCHHHHHHHHTCHHHHHHHHH----HTCCTT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC------------CCCCCHHHHHHHCCCHHHHHHHHh----CCCCCC
Confidence 4567899999999999999999999999998753 679999999999999999999999 899999
Q ss_pred cccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhh
Q 048228 96 IRAGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEK 175 (629)
Q Consensus 96 ~~d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~ 175 (629)
..+..|.||||+|+..|+.++|++|+++++. ....+..|.||||+| +..|+.+++++|+++|++++...
T Consensus 108 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A-~~~g~~~~v~~Ll~~g~~~~~~~--------- 176 (437)
T 1n11_A 108 LATTAGHTPLHIAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVA-AKYGKVRVAELLLERDAHPNAAG--------- 176 (437)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHH-HHTTCHHHHHHHHHTTCCTTCCC---------
T ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CcCCCCCCCCHHHHH-HHcCCHHHHHHHHhCCCCCCCCC---------
Confidence 9999999999999999999999999999987 467889999999998 78899999999999999888553
Q ss_pred hccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCC
Q 048228 176 LSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHG 253 (629)
Q Consensus 176 ~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g 253 (629)
..|.||||+|+..|+.++|++|+++|++++. .+..|.||||+|+..++.++ +|++.|++++..+..|
T Consensus 177 ----------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g 245 (437)
T 1n11_A 177 ----------KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS-PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 245 (437)
T ss_dssp ----------SSCCCHHHHHHHTTCHHHHHHHGGGTCCSCC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred ----------CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence 4478999999999999999999999999985 89999999999999999999 8888999999999999
Q ss_pred CchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCC
Q 048228 254 DTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQD 333 (629)
Q Consensus 254 ~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d 333 (629)
.||||+|+. .++.+++++|++.+ ++++..+..|.||||+|+..+ +.+++++|++ +|+++|.+|
T Consensus 246 ~t~L~~A~~----------~g~~~~v~~Ll~~~-----~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~-~g~~~~~~~ 308 (437)
T 1n11_A 246 VTPLHLAAQ----------EGHAEMVALLLSKQ-----ANGNLGNKSGLTPLHLVAQEG-HVPVADVLIK-HGVMVDATT 308 (437)
T ss_dssp CCHHHHHHH----------TTCHHHHHHHHTTT-----CCTTCCCTTCCCHHHHHHHHT-CHHHHHHHHH-HTCCTTCCC
T ss_pred CCHHHHHHH----------CCCHHHHHHHHhcC-----CCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHh-CCccCCCCC
Confidence 999999999 59999999999999 669999999999999999999 9999999999 999999999
Q ss_pred CCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcCCCCcccc
Q 048228 334 GEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTGIENASDA 413 (629)
Q Consensus 334 ~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~d 413 (629)
..|+||||+|+..|+.+ ++++|+++|+++|.+|..|+||||+|+..+ +.++|++|+++||+++..|
T Consensus 309 ~~g~t~L~~A~~~g~~~----~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g----------~~~iv~~Ll~~ga~~~~~~ 374 (437)
T 1n11_A 309 RMGYTPLHVASHYGNIK----LVKFLLQHQADVNAKTKLGYSPLHQAAQQG----------HTDIVTLLLKNGASPNEVS 374 (437)
T ss_dssp SSCCCHHHHHHHSSCSH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT----------CHHHHHHHHHTTCCSCCCC
T ss_pred CCCCCHHHHHHHcCcHH----HHHHHHhcCCCCCCCCCCCCCHHHHHHHCC----------hHHHHHHHHHCcCCCCCCC
Confidence 99999999999999998 999999999999999999999999999987 6999999999999999999
Q ss_pred ccCCChhhhhhh
Q 048228 414 ICDAASVEYSSC 425 (629)
Q Consensus 414 ~~g~t~~~~a~~ 425 (629)
..|+||+++|..
T Consensus 375 ~~g~t~l~~A~~ 386 (437)
T 1n11_A 375 SDGTTPLAIAKR 386 (437)
T ss_dssp SSSCCHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 999999998754
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.5e-48 Score=406.01 Aligned_cols=300 Identities=21% Similarity=0.218 Sum_probs=266.4
Q ss_pred CCCcHHHHHHHCCCHHHHHHHHHhCCCchhhhhhhHhhhhccccCCCCcHHHHHHhcCcHHHHHHHhhcccccCCCcccc
Q 048228 18 WYASPIDFAAANGHYELVKELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSSVARKLLHDCETKKGHNSLIR 97 (629)
Q Consensus 18 ~g~TpLh~Aa~~G~~~~v~~LL~~gad~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~~~~ 97 (629)
.|.||||.||..|++++|++||++|+|+|.++ ...|.||||+|+..|+.+++++|++ +|++++.+
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~-----------~~~g~TpLh~A~~~g~~~iv~~Ll~----~ga~~~~~ 88 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-----------EEGGWTPLHNAVQMSREDIVELLLR----HGADPVLR 88 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCC-----------TTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCC
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCccC-----------CCCCcCHHHHHHHcCCHHHHHHHHH----cCCchhhh
Confidence 46799999999999999999999999998752 2358999999999999999999999 99999999
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhc
Q 048228 98 AGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLS 177 (629)
Q Consensus 98 d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~ 177 (629)
+..+.++++.++..+...++..+++.+++ ++..|..|.||||+| +..|+.+++++|+++|++++.......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~g~t~l~~A-~~~~~~~~~~~ll~~ga~~~~~~~~~~------- 159 (337)
T 4g8k_A 89 KKNGATPFILAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEA-AVYGKVKALKFLYKRGANVNLRRKTKE------- 159 (337)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCBCTTCCBHHHHH-HHTTCHHHHHHHHHTTCCTTCCCCCC--------
T ss_pred ccCCCchhHHHHhcccchhhHHhhhccch-hhhhccCCCCHHHHH-HHcCcHHHHHHHHHcCCCcchhhcccc-------
Confidence 99999999999999999999999999988 588999999999998 788999999999999999986654321
Q ss_pred cchhHHhhhccchHHHHHHhcCCHHHHHHHHh-CCCCcccccCCCCCcHHHHHHhcCCcc----e--ecccCCCCccccC
Q 048228 178 DSYSVFKWEMMNRAVHAVARGGNLDILRQLLG-DCENVLAYRDVQGSTILHSASGRGQVE----V--LIAKSPSLISVTN 250 (629)
Q Consensus 178 ~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~-~gad~~~~~d~~g~TpLh~A~~~g~~~----i--lL~~~gadin~~d 250 (629)
.....+..|.||||+|+..|+.++|++||+ .|++++. .|..|.|+||.++..+... + +|++.|+++|.+|
T Consensus 160 --~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~-~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d 236 (337)
T 4g8k_A 160 --DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA-CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG 236 (337)
T ss_dssp ------CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTC-CCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCC
T ss_pred --ccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCc-cCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcC
Confidence 223346679999999999999999999996 6999995 9999999999988766543 2 7889999999999
Q ss_pred CCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcc
Q 048228 251 SHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLN 330 (629)
Q Consensus 251 ~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn 330 (629)
..|+||||+|+. .++.+++++|++.+.+ ++|.+|.+|+||||+|+..| +.++|++||+ +|+|+|
T Consensus 237 ~~g~t~L~~a~~----------~~~~~~v~~Ll~~~~~----~vn~~d~~G~TpL~~A~~~g-~~~iv~~Ll~-~GAd~n 300 (337)
T 4g8k_A 237 ERGKTPLILAVE----------KKHLGLVQRLLEQEHI----EINDTDSDGKTALLLAVELK-LKKIAELLCK-RGASTD 300 (337)
T ss_dssp GGGCCHHHHHHH----------TTCHHHHHHHHTSTTC----CTTCBCTTSCBHHHHHHHTT-CHHHHHHHHT-TSCSST
T ss_pred CCCCCHHHHHHH----------hhhhHHHHHHHHhcCC----cccCcCCCCCCHHHHHHHcC-CHHHHHHHHH-CCCCCC
Confidence 999999999999 5999999999986434 59999999999999999999 9999999999 999997
Q ss_pred cCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCC
Q 048228 331 IQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQ 369 (629)
Q Consensus 331 ~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~ 369 (629)
.+ ||||+|+..++.+ +|++||++||++|..
T Consensus 301 ~~-----~~L~~A~~~~~~~----iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 301 CG-----DLVMTARRNYDHS----LVKVLLSHGAKEDFH 330 (337)
T ss_dssp TC-----CHHHHHHHTTCHH----HHHHHHHTTCCC---
T ss_pred CC-----CHHHHHHHcCCHH----HHHHHHHCcCCCCCC
Confidence 64 5999999999988 999999999999864
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=3.1e-47 Score=397.74 Aligned_cols=295 Identities=20% Similarity=0.213 Sum_probs=263.6
Q ss_pred CCCCcHHHHHHhcCcHHHHHHHhhcccccCCCcccccCC-CChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHH
Q 048228 62 WDDEEQFDDVAKCRSSVARKLLHDCETKKGHNSLIRAGY-GGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDIL 140 (629)
Q Consensus 62 ~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~~~~d~~-g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~ 140 (629)
.+|.|+||.|++.|+.+++++|++ +|+++|.++.. |.||||+||..|+.++|++||++|++ ++..+..+.++++
T Consensus 23 ~~~~t~L~~Av~~g~~~~V~~LL~----~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~-~~~~~~~~~~~~~ 97 (337)
T 4g8k_A 23 VEDNHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFI 97 (337)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHH
T ss_pred CCCChHHHHHHHcCCHHHHHHHHH----CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc-hhhhccCCCchhH
Confidence 347899999999999999999999 99999998764 89999999999999999999999998 5888999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCccc----
Q 048228 141 YAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLA---- 216 (629)
Q Consensus 141 ~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~---- 216 (629)
++ +..+...++..+++++++++..+ ..|.||||+|+..|+.+++++|+++|++++.
T Consensus 98 ~~-~~~~~~~~~~~~~~~~~~~~~~d-------------------~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~ 157 (337)
T 4g8k_A 98 LA-AIAGSVKLLKLFLSKGADVNECD-------------------FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT 157 (337)
T ss_dssp HH-HHHTCHHHHHHHHTTTCCTTCBC-------------------TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCC
T ss_pred HH-HhcccchhhHHhhhccchhhhhc-------------------cCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcc
Confidence 98 67799999999999999888553 4588999999999999999999999998863
Q ss_pred -----ccCCCCCcHHHHHHhcCCcce---ecccCCCCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCC
Q 048228 217 -----YRDVQGSTILHSASGRGQVEV---LIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIV 288 (629)
Q Consensus 217 -----~~d~~g~TpLh~A~~~g~~~i---lL~~~gadin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~ 288 (629)
..+..|.||||+|+..|+.++ ||.+.|++++.+|..|.|+||+++..... ....+++++|+++|
T Consensus 158 ~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~------~~~~~i~~lLl~~g-- 229 (337)
T 4g8k_A 158 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD------SDVEAITHLLLDHG-- 229 (337)
T ss_dssp C-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT------TTHHHHHHHHHHTT--
T ss_pred ccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc------ccHHHHHHHHHHCC--
Confidence 135578999999999999998 55578999999999999999998874322 24467899999999
Q ss_pred cchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCC
Q 048228 289 EVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNC 368 (629)
Q Consensus 289 d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~ 368 (629)
+++|.+|..|+||||+|+..+ +.++|++|++..|+++|.+|.+|+||||+|+..|+.+ ++++||++|||+|.
T Consensus 230 ---ad~n~~d~~g~t~L~~a~~~~-~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~----iv~~Ll~~GAd~n~ 301 (337)
T 4g8k_A 230 ---ADVNVRGERGKTPLILAVEKK-HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK----IAELLCKRGASTDC 301 (337)
T ss_dssp ---CCTTCCCGGGCCHHHHHHHTT-CHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHH----HHHHHHTTSCSSTT
T ss_pred ---CCCCCcCCCCCCHHHHHHHhh-hhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCC
Confidence 679999999999999999999 9999999998679999999999999999999999988 99999999999986
Q ss_pred CCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcCCCCccc
Q 048228 369 QDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTGIENASD 412 (629)
Q Consensus 369 ~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~ 412 (629)
+ ||||+|++.+ +.++|++||++||+++..
T Consensus 302 ~-----~~L~~A~~~~----------~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 302 G-----DLVMTARRNY----------DHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp C-----CHHHHHHHTT----------CHHHHHHHHHTTCCC---
T ss_pred C-----CHHHHHHHcC----------CHHHHHHHHHCcCCCCCC
Confidence 4 5999999987 699999999999999864
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.5e-44 Score=363.58 Aligned_cols=273 Identities=19% Similarity=0.178 Sum_probs=218.6
Q ss_pred CCCcHHHHHHhcCcHHHHHHHhhcccccCCCcccc-cCCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHH
Q 048228 63 DDEEQFDDVAKCRSSVARKLLHDCETKKGHNSLIR-AGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILY 141 (629)
Q Consensus 63 ~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~~~~-d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~ 141 (629)
+|.|+||.|++.|+.+++++|++ .|.+++.. +..|.||||+|+..|+.++|++|+++|++ ++..|..|.||||+
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHH
Confidence 46677777777777777777777 67777666 56677777777777777777777777766 45666777777777
Q ss_pred HHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCC
Q 048228 142 AAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQ 221 (629)
Q Consensus 142 AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~ 221 (629)
| +..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++. .+..
T Consensus 79 A-~~~~~~~~v~~Ll~~g~~~~~~~-------------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~ 137 (285)
T 1wdy_A 79 A-AIAGSVKLLKLFLSKGADVNECD-------------------FYGFTAFMEAAVYGKVKALKFLYKRGANVNL-RRKT 137 (285)
T ss_dssp H-HHHTCHHHHHHHHHTTCCTTCBC-------------------TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTC-CCCC
T ss_pred H-HHcCCHHHHHHHHHcCCCCCccC-------------------cccCCHHHHHHHhCCHHHHHHHHHhCCCccc-cccc
Confidence 6 55677777777777777665432 3356777777777777777777777776653 2221
Q ss_pred CCcHHHHHHhcCCcceecccCCCCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcC-CCCcchhhhccCCcC
Q 048228 222 GSTILHSASGRGQVEVLIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSG-KIVEVKDIINVTNNN 300 (629)
Q Consensus 222 g~TpLh~A~~~g~~~ilL~~~gadin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~-g~~d~~a~in~~d~~ 300 (629)
. .+.+..+..|.||||+|+. .++.+++++|++. + ++++..|..
T Consensus 138 ~---------------------~~~~~~~~~g~t~L~~A~~----------~~~~~~v~~Ll~~~~-----~~~~~~~~~ 181 (285)
T 1wdy_A 138 K---------------------EDQERLRKGGATALMDAAE----------KGHVEVLKILLDEMG-----ADVNACDNM 181 (285)
T ss_dssp C---------------------HHHHHTTCCCCCHHHHHHH----------HTCHHHHHHHHHTSC-----CCTTCCCTT
T ss_pred H---------------------HHHHhhccCCCcHHHHHHH----------cCCHHHHHHHHHhcC-----CCCCccCCC
Confidence 1 1123347889999999999 5999999999987 7 559999999
Q ss_pred CchHHHHHHHcCCc----HHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHH-cCCCCCCCCCCCcc
Q 048228 301 GRTALHLAVSENIQ----CNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLIS-AGGISNCQDNVARN 375 (629)
Q Consensus 301 g~TpLh~A~~~~~~----~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~-~Gadvn~~d~~G~T 375 (629)
|+||||+|+..+ + .+++++|++ .|+++|.+|..|.||||+|+..++.+ ++++|++ .|++++.+|..|+|
T Consensus 182 g~t~l~~a~~~~-~~~~~~~i~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~~g~~~~~~~~~g~t 255 (285)
T 1wdy_A 182 GRNALIHALLSS-DDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLG----LVQRLLEQEHIEINDTDSDGKT 255 (285)
T ss_dssp SCCHHHHHHHCS-CTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHHHHHTTCHH----HHHHHHHSSSCCTTCCCTTSCC
T ss_pred CCCHHHHHHHcc-ccchHHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCCHH----HHHHHHhccCCCccccCCCCCc
Confidence 999999999998 7 999999999 99999999999999999999999988 9999999 89999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCChhhHHHHHHcCCCCcccc
Q 048228 376 AIACHLKGQGIGVSPGSSFRVPDAEIFLYTGIENASDA 413 (629)
Q Consensus 376 pL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~d 413 (629)
|||+|+..+ +.+++++|+++||+++.+|
T Consensus 256 ~l~~A~~~~----------~~~i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 256 ALLLAVELK----------LKKIAELLCKRGASTDCGD 283 (285)
T ss_dssp HHHHHHHTT----------CHHHHHHHHHHSSCSCCSS
T ss_pred HHHHHHHcC----------cHHHHHHHHHcCCCCCccc
Confidence 999999987 6999999999999999876
No 6
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=6e-44 Score=373.41 Aligned_cols=309 Identities=19% Similarity=0.108 Sum_probs=234.6
Q ss_pred CCCcHHHHHHHCCCHHHHHHHHHh-CCCchhhhhhhHhhhhccccCCCCcHHHHHHhcCcHHHHHHHhhcccccCCCccc
Q 048228 18 WYASPIDFAAANGHYELVKELLHL-DTNLLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSSVARKLLHDCETKKGHNSLI 96 (629)
Q Consensus 18 ~g~TpLh~Aa~~G~~~~v~~LL~~-gad~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~~~ 96 (629)
++.|+||.||..|+.++|+.||.. +++++.++ ..|.||||+|+..|+.+++++|++ +|++++.
T Consensus 23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d------------~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~ 86 (351)
T 3utm_A 23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASD------------GRKSTPLHLAAGYNRVRIVQLLLQ----HGADVHA 86 (351)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSS------------TTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTC
T ss_pred ccchhHHHHHHcCCHHHHHHHHHhcCCCcccCC------------CCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCc
Confidence 456788888888888877777764 66665432 457777777777777777777777 7777777
Q ss_pred ccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhh
Q 048228 97 RAGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKL 176 (629)
Q Consensus 97 ~d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~ 176 (629)
+|..|.||||+|+..|+.++|++|+++|++ ++..|..|.||||+| +..|+.+++++|+++|++++...
T Consensus 87 ~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~~g~~~~~~~---------- 154 (351)
T 3utm_A 87 KDKGGLVPLHNACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEA-ASKNRVEVCSLLLSHGADPTLVN---------- 154 (351)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHH-HHTTCHHHHHHHHHTTCCTTCCC----------
T ss_pred cCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHH-HHcCCHHHHHHHHHcCCCCcccc----------
Confidence 777777777777777777777777777766 466777777777777 66677777777777777766543
Q ss_pred ccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCCC
Q 048228 177 SDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGD 254 (629)
Q Consensus 177 ~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~ 254 (629)
..|.+|+++|+..+..+.+++.+.. ++++.++..+..+. .++..+......+..|.
T Consensus 155 ---------~~g~~~l~~a~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (351)
T 3utm_A 155 ---------CHGKSAVDMAPTPELRERLTYEFKG-------------HSLLQAAREADLAKVKKTLALEIINFKQPQSHE 212 (351)
T ss_dssp ---------TTSCCHHHHCSSHHHHHHHHHHHHH-------------HHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCC
T ss_pred ---------CCCCcchHHHhhhhhHHHHHhhhcc-------------cHHHHHHHhccHHHHHHHHHhhcccccCCCCCC
Confidence 2356777777666666666655431 34555666666555 22222333344677899
Q ss_pred chHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCC
Q 048228 255 TFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDG 334 (629)
Q Consensus 255 TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~ 334 (629)
||||+|+..+. .+..+++++|++.| +++|.+|..|+||||+|+..+ +.+++++|++ +|+++|.+|.
T Consensus 213 t~L~~A~~~~~-------~~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~-~ga~~n~~d~ 278 (351)
T 3utm_A 213 TALHCAVASLH-------PKRKQVAELLLRKG-----ANVNEKNKDFMTPLHVAAERA-HNDVMEVLHK-HGAKMNALDS 278 (351)
T ss_dssp CHHHHHHHCCS-------TTHHHHHHHHHHTT-----CCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCT
T ss_pred CHHHHHHHHhC-------ccHHHHHHHHHHcC-----CCcCCcCCCCCCHHHHHHHcC-CHHHHHHHHH-CCCCCCCcCC
Confidence 99999998432 16789999999999 669999999999999999999 9999999999 9999999999
Q ss_pred CCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcCCC
Q 048228 335 EGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTGIE 408 (629)
Q Consensus 335 ~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad 408 (629)
.|+||||+|+..++.+ ++++|+++|+|++.+|..|+|||++|. .+++++|.+.+..
T Consensus 279 ~g~t~L~~A~~~~~~~----~v~~Ll~~gad~~~~~~~g~tal~~a~--------------~~~~~~l~~~~~~ 334 (351)
T 3utm_A 279 LGQTALHRAALAGHLQ----TCRLLLSYGSDPSIISLQGFTAAQMGN--------------EAVQQILSESTPM 334 (351)
T ss_dssp TSCCHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHSC--------------HHHHHHHHHC---
T ss_pred CCCCHHHHHHHcCcHH----HHHHHHHcCCCCCCcCCCCCChhhhhh--------------HHHHHHHHhcccc
Confidence 9999999999999988 999999999999999999999998872 5788888887654
No 7
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.6e-43 Score=358.74 Aligned_cols=248 Identities=22% Similarity=0.234 Sum_probs=208.7
Q ss_pred cCCCCcHHHHHHhcCcHHHHHHHhhcccccCCCcccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHH
Q 048228 61 VWDDEEQFDDVAKCRSSVARKLLHDCETKKGHNSLIRAGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDIL 140 (629)
Q Consensus 61 ~~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~ 140 (629)
...|.||||+|+..++.+++++|++ +|++++.++..|.||||+|+..|+.++|++|+++|++ ++..|..|.||||
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~ 110 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLR----HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFM 110 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTCCBHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCcccCCHHH
Confidence 4568899999999999999999999 9999999999999999999999999999999999988 5788999999999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhC-CCCcccccC
Q 048228 141 YAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGD-CENVLAYRD 219 (629)
Q Consensus 141 ~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~-gad~~~~~d 219 (629)
+| +..|+.+++++|+++|++++...... ......+..|.||||+|+..|+.+++++|+++ |++++. .+
T Consensus 111 ~A-~~~~~~~~~~~Ll~~g~~~~~~~~~~---------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~ 179 (285)
T 1wdy_A 111 EA-AVYGKVKALKFLYKRGANVNLRRKTK---------EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA-CD 179 (285)
T ss_dssp HH-HHTTCHHHHHHHHHTTCCTTCCCCCC---------HHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTC-CC
T ss_pred HH-HHhCCHHHHHHHHHhCCCcccccccH---------HHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCc-cC
Confidence 98 78899999999999999988654321 12234477788999999999999999999987 777764 66
Q ss_pred CCCCcHHHHHHhcCCcceecccCCCCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCc
Q 048228 220 VQGSTILHSASGRGQVEVLIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNN 299 (629)
Q Consensus 220 ~~g~TpLh~A~~~g~~~ilL~~~gadin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~ 299 (629)
..|.||||+|+..++. ....+++++|++.| ++++.+|.
T Consensus 180 ~~g~t~l~~a~~~~~~-------------------------------------~~~~~i~~~Ll~~g-----~~~~~~~~ 217 (285)
T 1wdy_A 180 NMGRNALIHALLSSDD-------------------------------------SDVEAITHLLLDHG-----ADVNVRGE 217 (285)
T ss_dssp TTSCCHHHHHHHCSCT-------------------------------------TTHHHHHHHHHHTT-----CCSSCCCT
T ss_pred CCCCCHHHHHHHcccc-------------------------------------chHHHHHHHHHHcC-----CCCCCcCC
Confidence 6666666666554431 12378888888888 56888888
Q ss_pred CCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCC
Q 048228 300 NGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDN 371 (629)
Q Consensus 300 ~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~ 371 (629)
.|+||||+|+..+ +.+++++|++..|+++|.+|..|+||||+|+..++.+ ++++|+++||+++.+|.
T Consensus 218 ~g~t~L~~A~~~~-~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~----i~~~Ll~~Ga~~~~~d~ 284 (285)
T 1wdy_A 218 RGKTPLILAVEKK-HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK----IAELLCKRGASTDCGDL 284 (285)
T ss_dssp TSCCHHHHHHHTT-CHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHHSSCSCCSSC
T ss_pred CCCcHHHHHHHcC-CHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHH----HHHHHHHcCCCCCcccc
Confidence 8889999888888 8888888888678888888888899999998888877 88888888988888773
No 8
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.4e-43 Score=370.64 Aligned_cols=296 Identities=18% Similarity=0.181 Sum_probs=260.9
Q ss_pred CCCCcHHHHHHhcCcHHHHHHHhhcccccCCCcccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHH
Q 048228 62 WDDEEQFDDVAKCRSSVARKLLHDCETKKGHNSLIRAGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILY 141 (629)
Q Consensus 62 ~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~ 141 (629)
..+.++||.|++.|+.++++.|+. ..+.+++.+|..|.||||+||..|+.++|++|+++|++ ++..|..|.||||+
T Consensus 22 ~~~~~~L~~A~~~g~~~~v~~ll~---~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~ 97 (351)
T 3utm_A 22 EYKKDELLEAARSGNEEKLMALLT---PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHN 97 (351)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCC---TTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHH
T ss_pred cccchhHHHHHHcCCHHHHHHHHH---hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCcHHHH
Confidence 347789999999999887766665 26899999999999999999999999999999999988 68889999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCC
Q 048228 142 AAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQ 221 (629)
Q Consensus 142 AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~ 221 (629)
| +..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++. .+..
T Consensus 98 A-~~~g~~~iv~~Ll~~g~~~~~~~-------------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~ 156 (351)
T 3utm_A 98 A-CSYGHYEVTELLLKHGACVNAMD-------------------LWQFTPLHEAASKNRVEVCSLLLSHGADPTL-VNCH 156 (351)
T ss_dssp H-HHTTCHHHHHHHHHTTCCTTCCC-------------------TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTT
T ss_pred H-HHCCCHHHHHHHHHCCCCCCCCC-------------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc-ccCC
Confidence 8 78899999999999999888653 4478999999999999999999999999985 9999
Q ss_pred CCcHHHHHHhcCCcceecccCCCCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCC
Q 048228 222 GSTILHSASGRGQVEVLIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNG 301 (629)
Q Consensus 222 g~TpLh~A~~~g~~~ilL~~~gadin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g 301 (629)
|.||+|+|+..+..+.+.. ....++++.++. .++.+.++.++..... ....+..|
T Consensus 157 g~~~l~~a~~~~~~~~~~~----------~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~-----~~~~~~~~ 211 (351)
T 3utm_A 157 GKSAVDMAPTPELRERLTY----------EFKGHSLLQAAR----------EADLAKVKKTLALEII-----NFKQPQSH 211 (351)
T ss_dssp SCCHHHHCSSHHHHHHHHH----------HHHHHHHHHHHH----------TTCHHHHHHHTTTCCT-----TCCCTTTC
T ss_pred CCcchHHHhhhhhHHHHHh----------hhcccHHHHHHH----------hccHHHHHHHHHhhcc-----cccCCCCC
Confidence 9999999987766554111 012245666666 4788888888887722 45577889
Q ss_pred chHHHHHHHc---CCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHH
Q 048228 302 RTALHLAVSE---NIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNAIA 378 (629)
Q Consensus 302 ~TpLh~A~~~---~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~ 378 (629)
.||||+|+.. + ..+++++|++ .|+++|.+|..|+||||+|+..++.+ ++++|+++|+++|.+|..|+||||
T Consensus 212 ~t~L~~A~~~~~~~-~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~n~~d~~g~t~L~ 285 (351)
T 3utm_A 212 ETALHCAVASLHPK-RKQVAELLLR-KGANVNEKNKDFMTPLHVAAERAHND----VMEVLHKHGAKMNALDSLGQTALH 285 (351)
T ss_dssp CCHHHHHHHCCSTT-HHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CCHHHHHHHHhCcc-HHHHHHHHHH-cCCCcCCcCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHH
Confidence 9999999998 5 6899999999 99999999999999999999999988 999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCChhhHHHHHHcCCCCccccccCCChhhhh
Q 048228 379 CHLKGQGIGVSPGSSFRVPDAEIFLYTGIENASDAICDAASVEYS 423 (629)
Q Consensus 379 ~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~d~~g~t~~~~a 423 (629)
+|+..+ +.+++++|+++|+|++..|..|+||++++
T Consensus 286 ~A~~~~----------~~~~v~~Ll~~gad~~~~~~~g~tal~~a 320 (351)
T 3utm_A 286 RAALAG----------HLQTCRLLLSYGSDPSIISLQGFTAAQMG 320 (351)
T ss_dssp HHHHHT----------CHHHHHHHHHTTCCTTCCCTTSCCHHHHS
T ss_pred HHHHcC----------cHHHHHHHHHcCCCCCCcCCCCCChhhhh
Confidence 999987 69999999999999999999999999987
No 9
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=5.2e-44 Score=378.95 Aligned_cols=311 Identities=17% Similarity=0.093 Sum_probs=225.6
Q ss_pred CCcHHHHHHHCCCHHHHHHHHHhCCCchhhhhhhHhhhhccccCCCCcHHHHHHhcCcHHHHHHHhhcccccCCCccccc
Q 048228 19 YASPIDFAAANGHYELVKELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSSVARKLLHDCETKKGHNSLIRA 98 (629)
Q Consensus 19 g~TpLh~Aa~~G~~~~v~~LL~~gad~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~~~~d 98 (629)
-..+|+.|+..|+.+.++.++++...+.. -.+++..+...+...+..+++. +..+
T Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~g~~~~~~~~~~---------~~~~ 91 (373)
T 2fo1_E 37 SQHSLLEASYDGYIKRQRNELQHYSLYPN----------------PQGYGNGNDFLGDFNHTNLQIP---------TEPE 91 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccCCccccchhhhhhhhccccC----------------ccccCCCCCccccccccccccc---------cCCC
Confidence 34678999999999999999998766531 2234566777788888887765 2457
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCCccccCC-CCCCCHHHHHHHHcCCHHHHHHHH--------HcCCCCccccCCC
Q 048228 99 GYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEG-EYGVTDILYAAARSKNSEVFRLLL--------DNAVAPRCCLSSG 169 (629)
Q Consensus 99 ~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d-~~g~tpL~~AA~~~g~~~iv~~Ll--------~~Ga~~~~~~~~~ 169 (629)
..|.||||+|+..++ +++++|+.. . ++..| ..|.||||+| +..|+.+++++|+ ++|++++..+
T Consensus 92 ~~g~t~L~~Aa~~~~-~~~~~L~~~--~-~n~~d~~~g~t~Lh~A-a~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d--- 163 (373)
T 2fo1_E 92 PESPIKLHTEAAGSY-AITEPITRE--S-VNIIDPRHNRTVLHWI-ASNSSAEKSEDLIVHEAKECIAAGADVNAMD--- 163 (373)
T ss_dssp --CCCHHHHHHHSSS-CCCSCCSTT--T-TTTCCCSSCCCHHHHH-HCTTCCSCCTTHHHHHHHHHHHTCCCTTCCC---
T ss_pred CCCccHHHHHhcCCc-hHHHHhccc--c-ccccCCcCCCCHHHHH-HHCCCHHHHHHHHHHHHHHHHhcCCCCcCCC---
Confidence 789999999999654 888888764 2 45566 7899999998 7789988877776 8999888653
Q ss_pred CchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCC---C
Q 048228 170 GEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSP---S 244 (629)
Q Consensus 170 ~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~g---a 244 (629)
..|.||||+|+..|+.++|++|+++|++++. .+..|.||||+|+..|+.++ +|++.+ +
T Consensus 164 ----------------~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~ 226 (373)
T 2fo1_E 164 ----------------CDENTPLMLAVLARRRRLVAYLMKAGADPTI-YNKSERSALHQAAANRDFGMMVYMLNSTKLKG 226 (373)
T ss_dssp ----------------TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHH
T ss_pred ----------------CCCCCHHHHHHHcChHHHHHHHHHCCCCCcc-cCCCCCCHHHHHHHCCCHHHHHHHHhcCcccc
Confidence 4588999999999999999999999999995 99999999999999999999 677776 8
Q ss_pred CccccCCCCCchHHHHHhcCCCCCcccccc---HHHHHHHHHcCCCCcchhhhcc--------CCcCCchHHHHHHHcCC
Q 048228 245 LISVTNSHGDTFLHMVVAGFRSPGFRRVDH---QIQLMEQLVSGKIVEVKDIINV--------TNNNGRTALHLAVSENI 313 (629)
Q Consensus 245 din~~d~~g~TpLh~A~~~~~~~~~~~~~~---~~eivk~Ll~~g~~d~~a~in~--------~d~~g~TpLh~A~~~~~ 313 (629)
+++..|..|.||||+|+.. + +.+++++|++.| ++++. .|..|.||||+|+..+
T Consensus 227 ~~~~~d~~g~t~L~~A~~~----------~~~~~~~~v~~Ll~~g-----~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g- 290 (373)
T 2fo1_E 227 DIEELDRNGMTALMIVAHN----------EGRDQVASAKLLVEKG-----AKVDYDGAARKDSEKYKGRTALHYAAQVS- 290 (373)
T ss_dssp TTSCCCTTSCCHHHHHHHS----------CSTTHHHHHHHHHHHT-----CCSSCCSGGGTSSSSCCCCCTHHHHHSSC-
T ss_pred ChhhcCCCCCCHHHHHHHh----------CCcchHHHHHHHHHCC-----CCcccccccccCcccccCCCHHHHHHHhC-
Confidence 9999999999999999984 5 999999999999 44654 6779999999999999
Q ss_pred cHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCC
Q 048228 314 QCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSS 393 (629)
Q Consensus 314 ~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~ 393 (629)
+.++|++|++..|+++|.+|..|+||||+|+..|+.+ ++++|+++|++++.+|..|+|||++|+..+
T Consensus 291 ~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~----iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g--------- 357 (373)
T 2fo1_E 291 NMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE----VVMYLIQQGASVEAVDATDHTARQLAQANN--------- 357 (373)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHH----HHHHHHHTTCCSSCCCSSSCCHHHHHHHTT---------
T ss_pred CHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCccCCCCCCCCHHHHHHHcC---------
Confidence 9999999998345999999999999999999999988 999999999999999999999999999987
Q ss_pred CChhhHHHHHHcCCCC
Q 048228 394 FRVPDAEIFLYTGIEN 409 (629)
Q Consensus 394 ~~~~~v~~LL~~Gad~ 409 (629)
+.+++++|+++|++.
T Consensus 358 -~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 358 -HHNIVDIFDRCRPER 372 (373)
T ss_dssp -CHHHHHHHHTTC---
T ss_pred -CHHHHHHHHhcCccc
Confidence 699999999999873
No 10
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.3e-42 Score=349.76 Aligned_cols=225 Identities=18% Similarity=0.179 Sum_probs=146.6
Q ss_pred cCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHh
Q 048228 130 GEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLG 209 (629)
Q Consensus 130 ~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~ 209 (629)
..|..|+||||+| +..|+.+++++|+++|++++..+ ..|+||||+|+..|+.++|++|++
T Consensus 54 ~~~~~g~t~L~~A-a~~g~~~~v~~Ll~~g~~~~~~~-------------------~~g~t~L~~A~~~g~~~~v~~Ll~ 113 (285)
T 3d9h_A 54 GDAVSDWSPMHEA-AIHGHQLSLRNLISQGWAVNIIT-------------------ADHVSPLHEACLGGHLSCVKILLK 113 (285)
T ss_dssp SSSCCSCCHHHHH-HHTTCHHHHHHHHHTTCCSCEEC-------------------TTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCccCCCHHHHH-HHcCCHHHHHHHHHCCCCCCCcC-------------------CCCCCHHHHHHHCCcHHHHHHHHH
Confidence 3444455555544 34445555555555544444321 224455555555555555555555
Q ss_pred CCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCC
Q 048228 210 DCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKI 287 (629)
Q Consensus 210 ~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~ 287 (629)
+|++++. .|..|.||||+|+..|+.++ +|++.|++++.. ..|.||||+|+. .++.+++++|++.|
T Consensus 114 ~ga~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~----------~g~~~~v~~Ll~~g- 180 (285)
T 3d9h_A 114 HGAQVNG-VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAAR----------RGHVECVNSLIAYG- 180 (285)
T ss_dssp TTCCSSC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCS-CTTSCHHHHHHH----------HTCHHHHHHHHHTT-
T ss_pred CCCCCCC-CCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHH----------cCCHHHHHHHHHCC-
Confidence 5555442 44455555555555554444 444444444433 237788888888 47888888888888
Q ss_pred CcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCC
Q 048228 288 VEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISN 367 (629)
Q Consensus 288 ~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn 367 (629)
++++.+|..|+||||+|+..+ +.+++++|++ .|+++|. |..|.||||+|+..++.+ ++++|+++|+|++
T Consensus 181 ----~~~~~~d~~g~t~L~~A~~~~-~~~~v~~Ll~-~ga~~~~-~~~g~t~L~~A~~~~~~~----~v~~Ll~~gad~~ 249 (285)
T 3d9h_A 181 ----GNIDHKISHLGTPLYLACENQ-QRACVKKLLE-SGADVNQ-GKGQDSPLHAVVRTASEE----LACLLMDFGADTQ 249 (285)
T ss_dssp ----CCTTCCBTTTBCHHHHHHHTT-CHHHHHHHHH-TTCCTTC-CBTTBCHHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred ----CCCCCcCCCCCCHHHHHHHcC-cHHHHHHHHH-CCCCCCC-CCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCC
Confidence 568888888888888888888 8888888888 8888884 778888888888888877 8888888888888
Q ss_pred CCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHc-CCCCc
Q 048228 368 CQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYT-GIENA 410 (629)
Q Consensus 368 ~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~-Gad~~ 410 (629)
.+|..|+|||++|+. +.+++++|+++ |+++.
T Consensus 250 ~~d~~g~t~l~~A~~------------~~~~~~~Ll~~~~a~l~ 281 (285)
T 3d9h_A 250 AKNAEGKRPVELVPP------------ESPLAQLFLEREGASLP 281 (285)
T ss_dssp CCCTTSCCGGGGSCT------------TSHHHHHHHHHC-----
T ss_pred CcCCCCCCHHHHhcC------------ccHHHHHHHHhhccCCC
Confidence 888888888888873 25788888887 77764
No 11
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1e-42 Score=369.07 Aligned_cols=283 Identities=14% Similarity=0.131 Sum_probs=225.6
Q ss_pred CCCcHHHHHHHCCCHHHHHHHHHhCCCchhhhhhhHhhhhccccCCCCcHHHHHHhcCcHHHHHHHhhcccccCCCcccc
Q 048228 18 WYASPIDFAAANGHYELVKELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSSVARKLLHDCETKKGHNSLIR 97 (629)
Q Consensus 18 ~g~TpLh~Aa~~G~~~~v~~LL~~gad~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~~~~ 97 (629)
|-+++++-|...|+++++++++....+ ..|.||||+|+..+. +++++|.. .+++..
T Consensus 65 ~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------------~~g~t~L~~Aa~~~~-~~~~~L~~------~~~n~~ 120 (373)
T 2fo1_E 65 NPQGYGNGNDFLGDFNHTNLQIPTEPE-----------------PESPIKLHTEAAGSY-AITEPITR------ESVNII 120 (373)
T ss_dssp ----------------------------------------------CCCHHHHHHHSSS-CCCSCCST------TTTTTC
T ss_pred CccccCCCCCccccccccccccccCCC-----------------CCCccHHHHHhcCCc-hHHHHhcc------cccccc
Confidence 345677888899999999998876544 469999999999765 56666644 578888
Q ss_pred c-CCCChHHHHHHHcCCHHHHHHHH--------hcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCC
Q 048228 98 A-GYGGWLLYTAASAGDVRFVKELL--------QRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSS 168 (629)
Q Consensus 98 d-~~g~tpLh~A~~~g~~~~v~~LL--------~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~ 168 (629)
| ..|.||||+||..|+.++|++|+ +.|++ ++..|..|.||||+| +..|+.++|++|+++|++++..+
T Consensus 121 d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~-vn~~d~~g~TpL~~A-~~~g~~~iv~~Ll~~ga~~~~~~-- 196 (373)
T 2fo1_E 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-VNAMDCDENTPLMLA-VLARRRRLVAYLMKAGADPTIYN-- 196 (373)
T ss_dssp CCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-TTCCCTTSCCHHHHH-HHHTCHHHHHHHHHTTCCSCCCC--
T ss_pred CCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC-CcCCCCCCCCHHHHH-HHcChHHHHHHHHHCCCCCcccC--
Confidence 8 78999999999999998888776 77887 688999999999998 77799999999999999988653
Q ss_pred CCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCC---CCcccccCCCCCcHHHHHHhcC---Ccce--ecc
Q 048228 169 GGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDC---ENVLAYRDVQGSTILHSASGRG---QVEV--LIA 240 (629)
Q Consensus 169 ~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~g---ad~~~~~d~~g~TpLh~A~~~g---~~~i--lL~ 240 (629)
..|.||||+|+..|+.++|++|+++| ++++. .|..|.||||+|+..+ +.++ +|+
T Consensus 197 -----------------~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~d~~g~t~L~~A~~~~~~~~~~~v~~Ll 258 (373)
T 2fo1_E 197 -----------------KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE-LDRNGMTALMIVAHNEGRDQVASAKLLV 258 (373)
T ss_dssp -----------------TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSC-CCTTSCCHHHHHHHSCSTTHHHHHHHHH
T ss_pred -----------------CCCCCHHHHHHHCCCHHHHHHHHhcCccccChhh-cCCCCCCHHHHHHHhCCcchHHHHHHHH
Confidence 44789999999999999999999998 78885 9999999999999998 6666 778
Q ss_pred cCCCCccc--------cCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcC
Q 048228 241 KSPSLISV--------TNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSEN 312 (629)
Q Consensus 241 ~~gadin~--------~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~ 312 (629)
+.|++++. .|..|.||||+|+. .++.+++++|++.+.. ++|.+|..|+||||+|+..|
T Consensus 259 ~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~----------~g~~~~v~~Ll~~~~~----~~n~~d~~g~TpL~~A~~~g 324 (373)
T 2fo1_E 259 EKGAKVDYDGAARKDSEKYKGRTALHYAAQ----------VSNMPIVKYLVGEKGS----NKDKQDEDGKTPIMLAAQEG 324 (373)
T ss_dssp HHTCCSSCCSGGGTSSSSCCCCCTHHHHHS----------SCCHHHHHHHHHHSCC----CTTCCCTTCCCHHHHHHHHT
T ss_pred HCCCCcccccccccCcccccCCCHHHHHHH----------hCCHHHHHHHHHhcCC----CccCcCCCCCCHHHHHHHcC
Confidence 88999886 67799999999999 5999999999977534 49999999999999999999
Q ss_pred CcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCC
Q 048228 313 IQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGIS 366 (629)
Q Consensus 313 ~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadv 366 (629)
+.++|++|++ +|+++|.+|..|+||||+|+..++.+ ++++|+++|++-
T Consensus 325 -~~~iv~~Ll~-~gad~~~~d~~g~t~l~~A~~~g~~~----iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 325 -RIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHHN----IVDIFDRCRPER 372 (373)
T ss_dssp -CHHHHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTCHH----HHHHHHTTC---
T ss_pred -CHHHHHHHHH-cCCCccCCCCCCCCHHHHHHHcCCHH----HHHHHHhcCccc
Confidence 9999999999 99999999999999999999999988 999999998863
No 12
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.6e-41 Score=342.18 Aligned_cols=261 Identities=16% Similarity=0.114 Sum_probs=206.2
Q ss_pred ccCCCCcHHHHHHhcCcH-HHHHHHhhcccc-------cCCCcccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccC
Q 048228 60 TVWDDEEQFDDVAKCRSS-VARKLLHDCETK-------KGHNSLIRAGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGE 131 (629)
Q Consensus 60 ~~~~~~t~Lh~A~~~~~~-~i~~lL~~~~~~-------~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~ 131 (629)
....+.|+||+|+..|+. ++.++ +.+... ....++.+|..|.||||+||..|+.++|++|++.|++ ++..
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~ 88 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGS-KPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNII 88 (285)
T ss_dssp --------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC-SCEE
T ss_pred cchHHHHHHHHHhhcCCCCCcccC-CCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCc
Confidence 345689999999999885 45553 331111 1134567889999999999999999999999999988 6889
Q ss_pred CCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCC
Q 048228 132 GEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDC 211 (629)
Q Consensus 132 d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~g 211 (629)
|..|.||||+| +..|+.+++++|+++|++++..+ ..|.||||+|+..|+.++|++|+++|
T Consensus 89 ~~~g~t~L~~A-~~~g~~~~v~~Ll~~ga~~~~~~-------------------~~g~t~L~~A~~~~~~~~v~~Ll~~g 148 (285)
T 3d9h_A 89 TADHVSPLHEA-CLGGHLSCVKILLKHGAQVNGVT-------------------ADWHTPLFNACVSGSWDCVNLLLQHG 148 (285)
T ss_dssp CTTCCCHHHHH-HHTTCHHHHHHHHHTTCCSSCCC-------------------TTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCCCCCHHHHH-HHCCcHHHHHHHHHCCCCCCCCC-------------------CCCCCHHHHHHHcCHHHHHHHHHHCC
Confidence 99999999998 78899999999999999988653 44789999999999999999999999
Q ss_pred CCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCc
Q 048228 212 ENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVE 289 (629)
Q Consensus 212 ad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d 289 (629)
++++ .+..|.||||+|+..|+.++ +|++.|++++.+|..|.||||+|+. .++.+++++|++.|
T Consensus 149 ~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~----------~~~~~~v~~Ll~~g--- 213 (285)
T 3d9h_A 149 ASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACE----------NQQRACVKKLLESG--- 213 (285)
T ss_dssp CCSS--CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHH----------TTCHHHHHHHHHTT---
T ss_pred CCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----------cCcHHHHHHHHHCC---
Confidence 9997 45569999999999999999 8888999999999999999999999 59999999999999
Q ss_pred chhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHc-CCCCCC
Q 048228 290 VKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISA-GGISNC 368 (629)
Q Consensus 290 ~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~-Gadvn~ 368 (629)
++++. +..|+||||+|+..+ +.+++++|++ +|+|++.+|..|+||||+|+.. .+ ++++|+++ |+++..
T Consensus 214 --a~~~~-~~~g~t~L~~A~~~~-~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~~--~~----~~~~Ll~~~~a~l~~ 282 (285)
T 3d9h_A 214 --ADVNQ-GKGQDSPLHAVVRTA-SEELACLLMD-FGADTQAKNAEGKRPVELVPPE--SP----LAQLFLEREGASLPK 282 (285)
T ss_dssp --CCTTC-CBTTBCHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCTTSCCGGGGSCTT--SH----HHHHHHHHC------
T ss_pred --CCCCC-CCCCCCHHHHHHHcC-CHHHHHHHHH-CCCCCCCcCCCCCCHHHHhcCc--cH----HHHHHHHhhccCCCC
Confidence 56884 899999999999999 9999999999 9999999999999999999954 34 89999988 887754
No 13
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.6e-42 Score=366.03 Aligned_cols=271 Identities=15% Similarity=0.162 Sum_probs=225.4
Q ss_pred cCCCcccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCC
Q 048228 90 KGHNSLIRAGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSG 169 (629)
Q Consensus 90 ~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~ 169 (629)
.+.+.+..|..|.||||+||..|+.++|++||++|++ ++..|..|.||||+| +..|+.++|++|+++|++++..
T Consensus 9 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A-~~~g~~~~v~~Ll~~g~~~~~~---- 82 (364)
T 3ljn_A 9 PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLA-CKFGCVDTAKYLASVGEVHSLW---- 82 (364)
T ss_dssp -------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHH-HHHCCHHHHHHHHHHCCCCCCB----
T ss_pred cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCcHHHHH-HHcCCHHHHHHHHHCCCCcccc----
Confidence 3567777888899999999999999999999999887 578888999999998 6779999999999999866532
Q ss_pred CchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhC----CCCccc----------------ccCCCCCcHHHHH
Q 048228 170 GEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGD----CENVLA----------------YRDVQGSTILHSA 229 (629)
Q Consensus 170 ~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~----gad~~~----------------~~d~~g~TpLh~A 229 (629)
.|.||||+|+..|+.++|++|+++ |++++. ..+..|.||||+|
T Consensus 83 -----------------~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A 145 (364)
T 3ljn_A 83 -----------------HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWC 145 (364)
T ss_dssp -----------------TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHH
T ss_pred -----------------CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHH
Confidence 367999999999999999999998 776652 1677899999999
Q ss_pred HhcC--Ccce--ecccCCCCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCc-chhhhccCCcCCchH
Q 048228 230 SGRG--QVEV--LIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVE-VKDIINVTNNNGRTA 304 (629)
Q Consensus 230 ~~~g--~~~i--lL~~~gadin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d-~~a~in~~d~~g~Tp 304 (629)
+..| +.++ +|++.|++++..|..|+||||+|+. .++.+++++|++.| .+ ...++|..|..|+||
T Consensus 146 ~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~----------~g~~~~v~~Ll~~g-~~~~~~~~~~~~~~g~t~ 214 (364)
T 3ljn_A 146 VGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAME----------FRNREALDLMMDTV-PSKSSLRLDYANKQGNSH 214 (364)
T ss_dssp HHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHH----------TTCHHHHHHHHHHC-SCSSSCCTTCCCTTCCCT
T ss_pred HHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHH----------cCCHHHHHHHHhcc-cccccccccccCCCCCcH
Confidence 9999 8888 7777899999999999999999999 59999999999988 11 112299999999999
Q ss_pred HHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCC------------CCCC
Q 048228 305 LHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNC------------QDNV 372 (629)
Q Consensus 305 Lh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~------------~d~~ 372 (629)
||+|+..+ +.++|++|++ +|+|+|.+|..|.||||+|+..|+.+ ++++|+++|++++. .+..
T Consensus 215 L~~A~~~g-~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~g~~~----~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 288 (364)
T 3ljn_A 215 LHWAILIN-WEDVAMRFVE-MGIDVNMEDNEHTVPLYLSVRAAMVL----LTKELLQKTDVFLIQACPYHNGTTVLPDRV 288 (364)
T ss_dssp THHHHTTT-CHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTCCHH----HHHHHHHHSCHHHHHTCTTBSSSSBCGGGC
T ss_pred HHHHHHcC-CHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhChHH----HHHHHHHcCCchhhhcCcccCccccccccc
Confidence 99999999 9999999999 99999999999999999999999988 99999999987643 5667
Q ss_pred CccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcCCCCc
Q 048228 373 ARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTGIENA 410 (629)
Q Consensus 373 G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad~~ 410 (629)
++|||++|+..+ +.+.+..||+.+++..
T Consensus 289 ~~~~l~~aa~~~----------~~~~v~~ll~~~~~~~ 316 (364)
T 3ljn_A 289 VWLDFVPAAADP----------SKQEVLQLLQEKLDEV 316 (364)
T ss_dssp CCCTTSCSSCCH----------HHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhcc----------CHHHHHHHHHHHHHHH
Confidence 888888877665 4677777777776643
No 14
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.5e-41 Score=338.24 Aligned_cols=237 Identities=17% Similarity=0.148 Sum_probs=167.0
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhccch
Q 048228 101 GGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSY 180 (629)
Q Consensus 101 g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~ 180 (629)
|+||||+||..|+.++|++|+++|++ ++..|..|.||||+| +..|+.+++++|+++|++++..+
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A-~~~g~~~~v~~Ll~~g~~~~~~~-------------- 66 (261)
T 2xai_A 3 DWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEA-CLGGHLSCVKILLKHGAQVNGVT-------------- 66 (261)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHH-HHHTCHHHHHHHHHTTCCTTCCC--------------
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHH-HHcCCHHHHHHHHHCCCCCCCCC--------------
Confidence 45555555555555555555555544 345555555555555 44455555555555555554332
Q ss_pred hHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCCCchHH
Q 048228 181 SVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFLH 258 (629)
Q Consensus 181 ~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~TpLh 258 (629)
..|+||||+|+..|+.+++++|+++|++++ .+..|.||||+|+..|+.++ +|++.|++++..|..|.||||
T Consensus 67 -----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 139 (261)
T 2xai_A 67 -----ADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLY 139 (261)
T ss_dssp -----TTSCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHH
T ss_pred -----CCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence 224555555555555555555555555554 23345555555555555555 445555666667778889999
Q ss_pred HHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCc
Q 048228 259 MVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMT 338 (629)
Q Consensus 259 ~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~T 338 (629)
+|+. .++.+++++|++.| +++|. +..|+||||+|+..+ +.+++++|++ .|+|++.+|..|+|
T Consensus 140 ~A~~----------~~~~~~v~~Ll~~g-----~~~~~-~~~g~t~Lh~A~~~~-~~~~v~~Ll~-~gad~~~~d~~g~t 201 (261)
T 2xai_A 140 LACE----------NQQRACVKKLLESG-----ADVNQ-GKGQDSPLHAVARTA-SEELACLLMD-FGADTQAKNAEGKR 201 (261)
T ss_dssp HHHH----------TTCHHHHHHHHHHT-----CCTTC-CBTTBCHHHHHHHHT-CHHHHHHHHH-TTCCTTCCCTTSCC
T ss_pred HHHH----------hCCHHHHHHHHHcC-----CCCCC-CCCCCChHHHHHHcC-CHHHHHHHHH-cCCCCCCcCCCCCC
Confidence 9998 58999999999999 56875 889999999999999 9999999999 99999999999999
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHcCCC--------CCCCCCCCccHHHHHHHhC
Q 048228 339 PLDLLKQHPRSASSEILIKQLISAGGI--------SNCQDNVARNAIACHLKGQ 384 (629)
Q Consensus 339 pLh~A~~~~~~~~~~~lv~~Ll~~Gad--------vn~~d~~G~TpL~~A~~~~ 384 (629)
|||+|+..+. ++++|+++++. ++.+|..|+||||.+.+..
T Consensus 202 pl~~A~~~~~------~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~ 249 (261)
T 2xai_A 202 PVELVPPESP------LAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLV 249 (261)
T ss_dssp GGGGSCTTCT------HHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSS
T ss_pred hhhhcccccc------HHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccC
Confidence 9999997765 89999998874 4578999999999988764
No 15
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3e-40 Score=334.81 Aligned_cols=250 Identities=18% Similarity=0.091 Sum_probs=190.6
Q ss_pred cccccCCCChHHHHHHHcCCHHHHHHHHhcCCCc--cccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCc
Q 048228 94 SLIRAGYGGWLLYTAASAGDVRFVKELLQRDPLL--VFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGE 171 (629)
Q Consensus 94 ~~~~d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~--~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~ 171 (629)
++.+|..|.||||+||..|+.++|++|+++++.. ++..|..|.||||+| +..|+.+++++|+++|++++..+
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A-~~~g~~~~v~~Ll~~ga~~~~~~----- 75 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA-AILGEASTVEKLYAAGAGVLVAE----- 75 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHH-HHHTCHHHHHHHHHTTCCSSCCC-----
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHH-HHcCCHHHHHHHHHcCCCCCCCC-----
Confidence 3567888999999999999999999999887762 577888899999998 67799999999999998887553
Q ss_pred hhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCccc------------ccCCCCCcHHHHHHhcCCcce--
Q 048228 172 FEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLA------------YRDVQGSTILHSASGRGQVEV-- 237 (629)
Q Consensus 172 ~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~------------~~d~~g~TpLh~A~~~g~~~i-- 237 (629)
..|+||||+|+..|+.+++++|+++|++... .....+.++++.++..+....
T Consensus 76 --------------~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (282)
T 1oy3_D 76 --------------RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEE 141 (282)
T ss_dssp --------------TTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------------------------
T ss_pred --------------CCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhh
Confidence 3478999999999999999999998876432 123346677777776655444
Q ss_pred -ecccCCCCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcC-CchHHHHHHHcCCcH
Q 048228 238 -LIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNN-GRTALHLAVSENIQC 315 (629)
Q Consensus 238 -lL~~~gadin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~-g~TpLh~A~~~~~~~ 315 (629)
++...+++++..|..|.||||+|+. .++.+++++|++.| ++++..+.. |+||||+|+..+ +.
T Consensus 142 ~~~~~~~~~~~~~~~~g~t~L~~A~~----------~g~~~~v~~Ll~~g-----~~~~~~~~~~g~tpL~~A~~~~-~~ 205 (282)
T 1oy3_D 142 PRDEDWRLQLEAENYDGHTPLHVAVI----------HKDAEMVRLLRDAG-----ADLNKPEPTCGRTPLHLAVEAQ-AA 205 (282)
T ss_dssp --CCCGGGGTTCCCTTSCCHHHHHHH----------TTCHHHHHHHHHHT-----CCTTCCCTTTCCCHHHHHHHTT-CH
T ss_pred hhhhhhhhcCCCcCCCCcCHHHHHHH----------cCCHHHHHHHHHcC-----CCCCCCCCCCCcCHHHHHHHcC-CH
Confidence 6677789999999999999999999 59999999999999 669998865 999999999999 99
Q ss_pred HHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhC
Q 048228 316 NLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNAIACHLKGQ 384 (629)
Q Consensus 316 ~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~ 384 (629)
++|++|++ +|+|+|.+|..|+||||+|+..++.+ ++++|+++|++++.+|..|.|||++|....
T Consensus 206 ~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 206 SVLELLLK-AGADPTARMYGGRTPLGSALLRPNPI----LARLLRAHGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp HHHHHHHH-TTCCTTCCCTTSCCHHHHHHTSSCHH----HHHHHHHTTCCCCCCC--------------
T ss_pred HHHHHHHH-cCCCCcccccCCCCHHHHHHHcCCcH----HHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence 99999999 99999999999999999999999988 999999999999999999999999988654
No 16
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.2e-40 Score=335.27 Aligned_cols=243 Identities=19% Similarity=0.154 Sum_probs=221.2
Q ss_pred CCCCcHHHHHHhcCcHHHHHHHhhcccccCCCcccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHH
Q 048228 62 WDDEEQFDDVAKCRSSVARKLLHDCETKKGHNSLIRAGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILY 141 (629)
Q Consensus 62 ~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~ 141 (629)
++|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+||..|+.++|++|+++|++ ++..|..|.||||+
T Consensus 1 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~ 75 (261)
T 2xai_A 1 MSDWSPMHEAAIHGHQLSLRNLIS----QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFN 75 (261)
T ss_dssp ---CCHHHHHHHHTCHHHHHHHHH----TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHH
Confidence 368999999999999999999999 8999999999999999999999999999999999988 68899999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCC
Q 048228 142 AAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQ 221 (629)
Q Consensus 142 AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~ 221 (629)
| +..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++. .|..
T Consensus 76 A-~~~~~~~~v~~Ll~~g~~~~~~--------------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~ 133 (261)
T 2xai_A 76 A-CVSGSWDCVNLLLQHGASVQPE--------------------SDLASPIHEAARRGHVECVNSLIAYGGNIDH-KISH 133 (261)
T ss_dssp H-HHHTCHHHHHHHHHTTCCSSCS--------------------CTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTT
T ss_pred H-HHcCCHHHHHHHHHCCCCCCCC--------------------CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCc-CCCC
Confidence 8 7779999999999999988743 2378999999999999999999999999996 9999
Q ss_pred CCcHHHHHHhcCCcce--ecccCCCCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCc
Q 048228 222 GSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNN 299 (629)
Q Consensus 222 g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~ 299 (629)
|.||||+|+..++.++ +|++.|++++. +..|.||||+|+. .++.+++++|++.| ++++.+|.
T Consensus 134 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~----------~~~~~~v~~Ll~~g-----ad~~~~d~ 197 (261)
T 2xai_A 134 LGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVAR----------TASEELACLLMDFG-----ADTQAKNA 197 (261)
T ss_dssp TBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHH----------HTCHHHHHHHHHTT-----CCTTCCCT
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHH----------cCCHHHHHHHHHcC-----CCCCCcCC
Confidence 9999999999999999 78888999996 8999999999999 59999999999999 77999999
Q ss_pred CCchHHHHHHHcCCcHHHHHHHhcCCCC--------CcccCCCCCCcHHHHHHhCCCCch
Q 048228 300 NGRTALHLAVSENIQCNLVELLMTVPSI--------NLNIQDGEGMTPLDLLKQHPRSAS 351 (629)
Q Consensus 300 ~g~TpLh~A~~~~~~~~iv~~Ll~~~ga--------dvn~~d~~G~TpLh~A~~~~~~~~ 351 (629)
.|+||||+|+..+ +++++|++ .+. +++.+|..|.||||.|.+....+.
T Consensus 198 ~g~tpl~~A~~~~---~~~~~ll~-~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~~ 253 (261)
T 2xai_A 198 EGKRPVELVPPES---PLAQLFLE-REGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPED 253 (261)
T ss_dssp TSCCGGGGSCTTC---THHHHHHH-C-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCHH
T ss_pred CCCChhhhccccc---cHHHHHHh-ccCCccHHHHHHHHHHHHhchhccccCcccCCcHH
Confidence 9999999999654 69999999 665 466889999999999999887763
No 17
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=4.8e-40 Score=329.08 Aligned_cols=229 Identities=19% Similarity=0.209 Sum_probs=177.6
Q ss_pred CCcccccCCCChHHHHHHHcC-------------CHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHc
Q 048228 92 HNSLIRAGYGGWLLYTAASAG-------------DVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDN 158 (629)
Q Consensus 92 ~~~~~~d~~g~tpLh~A~~~g-------------~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~ 158 (629)
+|+|.+|.+|.||||+|+..| +.++|++|+++|++.....|..|.||||+| +..|+.+++++|+++
T Consensus 1 ~dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A-~~~g~~~~v~~Ll~~ 79 (253)
T 1yyh_A 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA-ARYSRSDAAKRLLEA 79 (253)
T ss_dssp ---------------------------------------------------CCCTTSCCHHHHH-HHTTCHHHHHHHHHT
T ss_pred CCCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHH-HHcCCHHHHHHHHHc
Confidence 368889999999999999977 899999999999997777899999999998 788999999999999
Q ss_pred CCCCccccCCCCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCC-CcccccCCCCCcHHHHHHhcCCcce
Q 048228 159 AVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCE-NVLAYRDVQGSTILHSASGRGQVEV 237 (629)
Q Consensus 159 Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~ga-d~~~~~d~~g~TpLh~A~~~g~~~i 237 (629)
|++++..+ ..|+||||+|+..|+.+++++|+++|+ +++. .+..|.||||+|+..++.++
T Consensus 80 g~~~~~~~-------------------~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~ 139 (253)
T 1yyh_A 80 SADANIQD-------------------NMGRTPLHAAVSADAQGVFQILIRNRATDLDA-RMHDGTTPLILAARLAVEGM 139 (253)
T ss_dssp TCCTTCCC-------------------TTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTC-CCTTCCCHHHHHHHHTCSSH
T ss_pred CCCCCCCC-------------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc-cCCCCCcHHHHHHHcChHHH
Confidence 99888653 447899999999999999999999998 7774 89999999999999999999
Q ss_pred --ecccCCCCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcH
Q 048228 238 --LIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQC 315 (629)
Q Consensus 238 --lL~~~gadin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~ 315 (629)
+|++.|++++.+|..|+||||+|+. .++.+++++|++.| ++++.+|..|+||||+|+..+ +.
T Consensus 140 v~~Ll~~g~~~~~~d~~g~t~L~~A~~----------~~~~~~v~~Ll~~g-----a~~~~~~~~g~tpL~~A~~~~-~~ 203 (253)
T 1yyh_A 140 LEDLINSHADVNAVDDLGKSALHWAAA----------VNNVDAAVVLLKNG-----ANKDMQNNREETPLFLAAREG-SY 203 (253)
T ss_dssp HHHHHHTTCCTTCBCTTSCBHHHHHHH----------HTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHHT-CH
T ss_pred HHHHHHcCCCCCCcCCCCCCHHHHHHH----------cCCHHHHHHHHHcC-----CCCCCcCCCCCCHHHHHHHCC-CH
Confidence 7888999999999999999999999 59999999999999 679999999999999999999 99
Q ss_pred HHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHc
Q 048228 316 NLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISA 362 (629)
Q Consensus 316 ~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~ 362 (629)
+++++|++ +|++++.+|..|+||||+|++.|+.+ ++++|...
T Consensus 204 ~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~g~~~----i~~~l~~~ 245 (253)
T 1yyh_A 204 ETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHD----IVRLLDLE 245 (253)
T ss_dssp HHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHC-
T ss_pred HHHHHHHH-cCCCccccccCCCCHHHHHHHcCCHH----HHHHHHHH
Confidence 99999999 99999999999999999999999988 88887754
No 18
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=3.5e-41 Score=355.70 Aligned_cols=276 Identities=18% Similarity=0.135 Sum_probs=237.6
Q ss_pred ccCCCCcHHHHHHhcCcHHHHHHHhhcccccCCCcccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHH
Q 048228 60 TVWDDEEQFDDVAKCRSSVARKLLHDCETKKGHNSLIRAGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDI 139 (629)
Q Consensus 60 ~~~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL 139 (629)
.+.+|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+||..|+.++|++|++++++. .+..|.|||
T Consensus 16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L 88 (364)
T 3ljn_A 16 SDDENMEKIHVAARKGQTDEVRRLIE----TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPI 88 (364)
T ss_dssp CCHHHHHHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHH
Confidence 34568999999999999999999999 89999999999999999999999999999999999853 345799999
Q ss_pred HHHHHHcCCHHHHHHHHHc----CCCCccccCCCCchhhhhccchhHHhhhccchHHHHHHhcC--CHHHHHHHHhCCCC
Q 048228 140 LYAAARSKNSEVFRLLLDN----AVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGG--NLDILRQLLGDCEN 213 (629)
Q Consensus 140 ~~AA~~~g~~~iv~~Ll~~----Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g--~~~iv~~Ll~~gad 213 (629)
|+| +..|+.+++++|+++ |++++........ ...........+..|.||||+|+..| +.++|++|+++|++
T Consensus 89 ~~A-~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~ 165 (364)
T 3ljn_A 89 HLA-VMANKTDLVVALVEGAKERGQMPESLLNECDE--REVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS 165 (364)
T ss_dssp HHH-HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCC--CCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC
T ss_pred HHH-HHcCCHHHHHHHHHhccccCCCHHHHHhhcch--HhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC
Confidence 998 788999999999999 8877752221110 01112233346778999999999999 99999999999999
Q ss_pred cccccCCCCCcHHHHHHhcCCcce--ecccCCCC-----ccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCC
Q 048228 214 VLAYRDVQGSTILHSASGRGQVEV--LIAKSPSL-----ISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGK 286 (629)
Q Consensus 214 ~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gad-----in~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g 286 (629)
++. .|..|.||||+|+..|+.++ +|++.|++ ++..|..|+||||+|+. .++.+++++|+++|
T Consensus 166 ~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~----------~g~~~~v~~Ll~~g 234 (364)
T 3ljn_A 166 PTA-KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAIL----------INWEDVAMRFVEMG 234 (364)
T ss_dssp TTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHT----------TTCHHHHHHHHTTT
T ss_pred Ccc-cCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHH----------cCCHHHHHHHHHcC
Confidence 995 99999999999999999999 77777887 99999999999999999 59999999999999
Q ss_pred CCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCccc------------CCCCCCcHHHHHHhCCCCchHHH
Q 048228 287 IVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNI------------QDGEGMTPLDLLKQHPRSASSEI 354 (629)
Q Consensus 287 ~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~------------~d~~G~TpLh~A~~~~~~~~~~~ 354 (629)
+++|.+|..|+||||+|+..+ +.++|++|++ +|++++. .+..|+|||++|+..++.+
T Consensus 235 -----ad~~~~d~~g~tpL~~A~~~g-~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~---- 303 (364)
T 3ljn_A 235 -----IDVNMEDNEHTVPLYLSVRAA-MVLLTKELLQ-KTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQ---- 303 (364)
T ss_dssp -----CCTTCCCTTSCCHHHHHHHTC-CHHHHHHHHH-HSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHH----
T ss_pred -----CCCCCCCCCCCCHHHHHHHhC-hHHHHHHHHH-cCCchhhhcCcccCcccccccccccccchhhhhccCHH----
Confidence 679999999999999999999 9999999999 8888654 4567899999999998766
Q ss_pred HHHHHHHcCCCCC
Q 048228 355 LIKQLISAGGISN 367 (629)
Q Consensus 355 lv~~Ll~~Gadvn 367 (629)
.+..|+..+++..
T Consensus 304 ~v~~ll~~~~~~~ 316 (364)
T 3ljn_A 304 EVLQLLQEKLDEV 316 (364)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5666666665543
No 19
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.2e-38 Score=314.86 Aligned_cols=231 Identities=22% Similarity=0.249 Sum_probs=210.9
Q ss_pred CCcccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCc
Q 048228 92 HNSLIRAGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGE 171 (629)
Q Consensus 92 ~~~~~~d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~ 171 (629)
.+++.+|..|.||||+||..|+.++|++|+++|++ ++..+..|.||||+| +..|+.+++++|+++|++++...
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~~g~~~~~~~----- 74 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEA-AENNHLEAVKYLIKAGALVDPKD----- 74 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHH-HHTTCHHHHHHHHTTTCCCCCCC-----
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC-cCccCCCCCCHHHHH-HHhCCHHHHHHHHhCCCCCCCCC-----
Confidence 57788999999999999999999999999999988 577889999999998 77899999999999999887553
Q ss_pred hhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCC-CCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccc
Q 048228 172 FEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDC-ENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISV 248 (629)
Q Consensus 172 ~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~g-ad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~ 248 (629)
..|.||||+|+..|+.+++++|+++| .+++. .+..|.||||+|+..++.++ +|++.|++++.
T Consensus 75 --------------~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~ 139 (237)
T 3b7b_A 75 --------------AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC-QDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI 139 (237)
T ss_dssp --------------TTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred --------------CCCCcHHHHHHHcCCHHHHHHHHhCCCCCccc-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence 34789999999999999999999998 77874 89999999999999999998 78889999999
Q ss_pred cCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCC
Q 048228 249 TNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSIN 328 (629)
Q Consensus 249 ~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gad 328 (629)
+|..|.||||+|+. .++.+++++|++.| ++++.+|..|.||||+|+..+ +.+++++|++ +|+|
T Consensus 140 ~~~~g~t~L~~A~~----------~~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~gad 202 (237)
T 3b7b_A 140 RDNEENICLHWAAF----------SGCVDIAEILLAAK-----CDLHAVNIHGDSPLHIAAREN-RYDCVVLFLS-RDSD 202 (237)
T ss_dssp CCTTSCCHHHHHHH----------HCCHHHHHHHHTTT-----CCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHT-TTCC
T ss_pred cCCCCCCHHHHHHH----------CCCHHHHHHHHHcC-----CCCCCcCCCCCCHHHHHHHhC-CHhHHHHHHH-cCCC
Confidence 99999999999999 58999999999999 669999999999999999999 9999999999 9999
Q ss_pred cccCCCCCCcHHHHHHhCCCCchHHHHHHHHHH
Q 048228 329 LNIQDGEGMTPLDLLKQHPRSASSEILIKQLIS 361 (629)
Q Consensus 329 vn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~ 361 (629)
++.+|..|+||||+|+..++.+....+++.|.+
T Consensus 203 ~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 203 VTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp TTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred CCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998777777777765
No 20
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.7e-39 Score=325.02 Aligned_cols=229 Identities=19% Similarity=0.191 Sum_probs=177.9
Q ss_pred cccCCCCCCCHHHHHHHHcC-------------CHHHHHHHHHcCCCCccccCCCCchhhhhccchhHHhhhccchHHHH
Q 048228 128 VFGEGEYGVTDILYAAARSK-------------NSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHA 194 (629)
Q Consensus 128 ~~~~d~~g~tpL~~AA~~~g-------------~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~ 194 (629)
++.+|.+|.||||+| +..| +.+++++|+++|++++.. .+..|+||||+
T Consensus 3 vn~~d~~g~tpL~~A-~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~------------------~d~~g~t~L~~ 63 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIA-SCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQ------------------TDRTGETALHL 63 (253)
T ss_dssp --------------------------------------------------C------------------CCTTSCCHHHH
T ss_pred CCCCCCCCCcHHHHH-HhccccccccchhhcCCChHHHHHHHHccCCcccc------------------cCCCCCcHHHH
Confidence 577899999999999 4445 899999999999987643 23558899999
Q ss_pred HHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCC-CccccCCCCCchHHHHHhcCCCCCccc
Q 048228 195 VARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPS-LISVTNSHGDTFLHMVVAGFRSPGFRR 271 (629)
Q Consensus 195 A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~ga-din~~d~~g~TpLh~A~~~~~~~~~~~ 271 (629)
|+..|+.++|++|+++|++++. .+..|.||||+|+..|+.++ +|++.+. +++..+..|.||||+|+.
T Consensus 64 A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~--------- 133 (253)
T 1yyh_A 64 AARYSRSDAAKRLLEASADANI-QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR--------- 133 (253)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHH---------
T ss_pred HHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHH---------
Confidence 9999999999999999999995 99999999999999999999 5555555 999999999999999999
Q ss_pred cccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCch
Q 048228 272 VDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSAS 351 (629)
Q Consensus 272 ~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~ 351 (629)
.++.+++++|++.| ++++.+|..|+||||+|+..+ +.+++++|++ .|+++|.+|..|.||||+|+..++.+
T Consensus 134 -~~~~~~v~~Ll~~g-----~~~~~~d~~g~t~L~~A~~~~-~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~~~- 204 (253)
T 1yyh_A 134 -LAVEGMLEDLINSH-----ADVNAVDDLGKSALHWAAAVN-NVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYE- 204 (253)
T ss_dssp -HTCSSHHHHHHHTT-----CCTTCBCTTSCBHHHHHHHHT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHH-
T ss_pred -cChHHHHHHHHHcC-----CCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHCCCHH-
Confidence 58999999999999 669999999999999999999 9999999999 99999999999999999999999988
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcCC
Q 048228 352 SEILIKQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTGI 407 (629)
Q Consensus 352 ~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Ga 407 (629)
++++|+++|++++.+|..|+|||++|+..+ +.+++++|....-
T Consensus 205 ---~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g----------~~~i~~~l~~~~~ 247 (253)
T 1yyh_A 205 ---TAKVLLDHFANRDITDHMDRLPRDIAQERM----------HHDIVRLLDLEHH 247 (253)
T ss_dssp ---HHHHHHHTTCCTTCCCTTCCCHHHHHHHTT----------CHHHHHHHHC---
T ss_pred ---HHHHHHHcCCCccccccCCCCHHHHHHHcC----------CHHHHHHHHHHhh
Confidence 999999999999999999999999999987 6999999987543
No 21
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=7.4e-39 Score=324.56 Aligned_cols=250 Identities=18% Similarity=0.165 Sum_probs=192.2
Q ss_pred cccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHH
Q 048228 128 VFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQL 207 (629)
Q Consensus 128 ~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~L 207 (629)
++..|..|.||||+| +..|+.++|++|+++|++++.. +.++..|+||||+|+..|+.++|++|
T Consensus 2 ~~~~d~~g~t~L~~A-~~~g~~~~v~~Ll~~g~~~~~~----------------~~~~~~g~t~L~~A~~~g~~~~v~~L 64 (282)
T 1oy3_D 2 FGYVTEDGDTALHLA-VIHQHEPFLDFLLGFSAGHEYL----------------DLQNDLGQTALHLAAILGEASTVEKL 64 (282)
T ss_dssp CCCCCTTCCCHHHHH-HHTTCHHHHHHHHHHHTTSGGG----------------GCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred CCccCCCCCcHHHHH-HHcCCHHHHHHHHhcCCCcccc----------------cccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 466899999999998 7889999999999999875422 12356689999999999999999999
Q ss_pred HhCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccc-------------cCCCCCchHHHHHhcCCCCCcccc
Q 048228 208 LGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISV-------------TNSHGDTFLHMVVAGFRSPGFRRV 272 (629)
Q Consensus 208 l~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~-------------~d~~g~TpLh~A~~~~~~~~~~~~ 272 (629)
+++|++++. .+..|.||||+|+..++.++ +|++.+++... ....+.++++.++..
T Consensus 65 l~~ga~~~~-~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 134 (282)
T 1oy3_D 65 YAAGAGVLV-AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP--------- 134 (282)
T ss_dssp HHTTCCSSC-CCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------
T ss_pred HHcCCCCCC-CCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhcccc---------
Confidence 999999995 99999999999999999999 66666665332 223466777777763
Q ss_pred ccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCC-CCcHHHHHHhCCCCch
Q 048228 273 DHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGE-GMTPLDLLKQHPRSAS 351 (629)
Q Consensus 273 ~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~-G~TpLh~A~~~~~~~~ 351 (629)
.....+...+...+ .+++.++..|.||||+|+..+ +.++|++|++ +|++++.++.. |+||||+|+..++.+
T Consensus 135 ~~~~~~~~~~~~~~-----~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~~~- 206 (282)
T 1oy3_D 135 NPENEEEPRDEDWR-----LQLEAENYDGHTPLHVAVIHK-DAEMVRLLRD-AGADLNKPEPTCGRTPLHLAVEAQAAS- 206 (282)
T ss_dssp ---------CCCGG-----GGTTCCCTTSCCHHHHHHHTT-CHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHH-
T ss_pred ccchhhhhhhhhhh-----hcCCCcCCCCcCHHHHHHHcC-CHHHHHHHHH-cCCCCCCCCCCCCcCHHHHHHHcCCHH-
Confidence 23344444444444 669999999999999999999 9999999999 99999999865 999999999999988
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcCCCCccccccCCChhhhhhh
Q 048228 352 SEILIKQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTGIENASDAICDAASVEYSSC 425 (629)
Q Consensus 352 ~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~d~~g~t~~~~a~~ 425 (629)
++++|+++|++++.+|..|+||||+|+..+ +.+++++|+++||+++.++..|.||++++..
T Consensus 207 ---~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~----------~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~ 267 (282)
T 1oy3_D 207 ---VLELLLKAGADPTARMYGGRTPLGSALLRP----------NPILARLLRAHGAPEPEDGGDKLSPCSSSGS 267 (282)
T ss_dssp ---HHHHHHHTTCCTTCCCTTSCCHHHHHHTSS----------CHHHHHHHHHTTCCCCCCC------------
T ss_pred ---HHHHHHHcCCCCcccccCCCCHHHHHHHcC----------CcHHHHHHHHcCCCcCcCCCcccccccccCC
Confidence 999999999999999999999999999887 6999999999999999999999999997754
No 22
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.8e-38 Score=312.40 Aligned_cols=226 Identities=21% Similarity=0.256 Sum_probs=205.9
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhcc
Q 048228 99 GYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSD 178 (629)
Q Consensus 99 ~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~ 178 (629)
..+.+|||.|+..|+.++|++|++.++..++..|..|.||||+| +..|+.+++++|+++|++++..+
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~g~~~~v~~Ll~~g~~~~~~~------------ 70 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWA-CSAGHTEIVEFLLQLGVPVNDKD------------ 70 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH-HHHTCHHHHHHHHHTTCCSCCCC------------
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHH-HHcCcHHHHHHHHHhCCCCCCcC------------
Confidence 45788999999999999999999998877788899999999998 77799999999999999887543
Q ss_pred chhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCCCch
Q 048228 179 SYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTF 256 (629)
Q Consensus 179 ~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~Tp 256 (629)
..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..++.++ +|++.|++++..|..|.||
T Consensus 71 -------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 142 (231)
T 3aji_A 71 -------DAGWSPLHIAASAGXDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATA 142 (231)
T ss_dssp -------TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred -------CCCCCHHHHHHHcCHHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcH
Confidence 4478999999999999999999999999985 89999999999999999988 7788899999999999999
Q ss_pred HHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCC
Q 048228 257 LHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEG 336 (629)
Q Consensus 257 Lh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G 336 (629)
||+|+. .++.+++++|++.| ++++.+|..|+||||+|+..+ +.+++++|++ +|++++.+|..|
T Consensus 143 L~~A~~----------~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~ga~~~~~~~~g 205 (231)
T 3aji_A 143 MHRAAA----------KGNLKMVHILLFYK-----ASTNIQDTEGNTPLHLACDEE-RVEEAKFLVT-QGASIYIENKEE 205 (231)
T ss_dssp HHHHHH----------HTCHHHHHHHHHTT-----CCSCCCCTTSCCHHHHHHHTT-CHHHHHHHHH-TTCCSCCCCTTS
T ss_pred HHHHHH----------cCCHHHHHHHHhcC-----CCccccCCCCCCHHHHHHHCC-CHHHHHHHHH-CCCCCCCCCCCC
Confidence 999999 59999999999999 669999999999999999999 9999999999 999999999999
Q ss_pred CcHHHHHHhCCCCchHHHHHHHHHHcCCCC
Q 048228 337 MTPLDLLKQHPRSASSEILIKQLISAGGIS 366 (629)
Q Consensus 337 ~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadv 366 (629)
.||||+|+..++.+ ++++|+++|+++
T Consensus 206 ~t~l~~A~~~~~~~----i~~lL~~~~a~i 231 (231)
T 3aji_A 206 KTPLQVAKGGLGLI----LKRLAEGEEASM 231 (231)
T ss_dssp CCHHHHSCHHHHHH----HHHHHHHHHHCC
T ss_pred CCHHHHHHhhHHHH----HHHHHccccccC
Confidence 99999999887766 899999988764
No 23
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.3e-38 Score=315.15 Aligned_cols=227 Identities=20% Similarity=0.211 Sum_probs=180.1
Q ss_pred ccccCCCChHHHHHHHcCCHHHHHHHHh----cCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCC
Q 048228 95 LIRAGYGGWLLYTAASAGDVRFVKELLQ----RDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGG 170 (629)
Q Consensus 95 ~~~d~~g~tpLh~A~~~g~~~~v~~LL~----~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~ 170 (629)
+.+|.+|.||||+||..|+.++|++|++ .+.+ ++..|..|.||||+| +..|+.+++++|+++|++++..+
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~~g~~~~~~~---- 76 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLA-VITTLPSVVRLLVTAGASPMALD---- 76 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHH-HHTTCHHHHHHHHHTTCCTTCCC----
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCcccccCCCHHHHH-HHcCCHHHHHHHHHcCCCccccC----
Confidence 4567788888888888888888888886 4544 577788888888887 66788888888888888776543
Q ss_pred chhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCC----CcccccCCCCCcHHHHHHhcCCcce--ecccCCC
Q 048228 171 EFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCE----NVLAYRDVQGSTILHSASGRGQVEV--LIAKSPS 244 (629)
Q Consensus 171 ~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~ga----d~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~ga 244 (629)
..|.||||+|+..|+.+++++|++.++ +++. .+..|.||||+|+..++.++ +|++.|+
T Consensus 77 ---------------~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 140 (241)
T 1k1a_A 77 ---------------RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA-RNYDGLTALHVAVNTECQETVQLLLERGA 140 (241)
T ss_dssp ---------------TTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred ---------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccc-cCcCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 346788888888888888888888877 6664 77788888888888888777 6677778
Q ss_pred CccccC-CCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhc
Q 048228 245 LISVTN-SHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMT 323 (629)
Q Consensus 245 din~~d-~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~ 323 (629)
+++..+ ..|.||||+|+. .++.+++++|++.| ++++.+|..|+||||+|+..+ +.+++++|++
T Consensus 141 ~~~~~~~~~g~t~L~~A~~----------~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~ 204 (241)
T 1k1a_A 141 DIDAVDIKSGRSPLIHAVE----------NNSLSMVQLLLQHG-----ANVNAQMYSGSSALHSASGRG-LLPLVRTLVR 204 (241)
T ss_dssp CTTCCCTTTCCCHHHHHHH----------TTCHHHHHHHHHTT-----CCTTCBCTTSCBHHHHHHHHT-CHHHHHHHHH
T ss_pred CcccccccCCCcHHHHHHH----------cCCHHHHHHHHHcC-----CCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHh
Confidence 888877 788899999998 58899999999998 668999999999999999998 9999999999
Q ss_pred CCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCC
Q 048228 324 VPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGG 364 (629)
Q Consensus 324 ~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Ga 364 (629)
+|+|++.+|..|.||||+|+..++.+ +++.|++.++
T Consensus 205 -~ga~~~~~~~~g~tpl~~A~~~~~~~----i~~~l~~~~a 240 (241)
T 1k1a_A 205 -SGADSSLKNCHNDTPLMVARSRRVID----ILRGKATRPA 240 (241)
T ss_dssp -TTCCTTCCCTTSCCTTTTCSSHHHHH----HHTC------
T ss_pred -cCCCCCCcCCCCCCHHHHHHhcCcHH----HHhhhccCCC
Confidence 89999999999999999999988877 8888877665
No 24
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-39 Score=327.13 Aligned_cols=232 Identities=21% Similarity=0.202 Sum_probs=162.2
Q ss_pred cccCCCChHHHHHHHcCCHHHHHHHHhcCCCc-------cccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCC
Q 048228 96 IRAGYGGWLLYTAASAGDVRFVKELLQRDPLL-------VFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSS 168 (629)
Q Consensus 96 ~~d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~-------~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~ 168 (629)
.+|..+.++|+.||..|++++|++||+.++.. ++..+..|.|||++|+.......++++|+++|+++|..+
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d-- 83 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTS-- 83 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCC--
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcC--
Confidence 35666789999999999999999999988753 355677889999998544444568899999999888553
Q ss_pred CCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCc
Q 048228 169 GGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLI 246 (629)
Q Consensus 169 ~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadi 246 (629)
..|+||||+|+..|+.++|++|++.|++++. .+..|.||||+|+..++.++ +|++.|+++
T Consensus 84 -----------------~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~ 145 (269)
T 4b93_B 84 -----------------QDGSSPLHVAALHGRADLIPLLLKHGANAGA-RNADQAVPLHLACQQGHFQVVKCLLDSNAKP 145 (269)
T ss_dssp -----------------TTSCCHHHHHHHTTCTTHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred -----------------CCCCCHHHHHHHcCcHHHHHHHHhcCCCcCc-cCCCCCCccccccccChHHHHHHHHHCCCCC
Confidence 4478999999999999999999999999985 88889999999999888888 777888899
Q ss_pred cccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCC
Q 048228 247 SVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPS 326 (629)
Q Consensus 247 n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~g 326 (629)
+.+|..|+||||+|+. .|+.+++++|++.| +++|.++..|+||||+|+..| +.++|++||+ +|
T Consensus 146 n~~d~~g~TpL~~A~~----------~g~~~~v~~Ll~~g-----advn~~~~~g~t~Lh~A~~~g-~~~~v~~Ll~-~G 208 (269)
T 4b93_B 146 NKKDLSGNTPLIYACS----------GGHHELVALLLQHG-----ASINASNNKGNTALHEAVIEK-HVFVVELLLL-HG 208 (269)
T ss_dssp CCCCTTCCCHHHHHHH----------TTCGGGHHHHHHTT-----CCTTCBCTTSCBHHHHHHHTT-CHHHHHHHHH-TT
T ss_pred CCCCCCCCCHHHHHHH----------CCCHHHHHHHHHCC-----CCCCccccCCCcHHHHHHHcC-CHHHHHHHHH-CC
Confidence 9889899999999988 48888999999888 668888999999999999888 8999999998 89
Q ss_pred CCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCC
Q 048228 327 INLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISN 367 (629)
Q Consensus 327 advn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn 367 (629)
+|+|.+|.+|+||||+|+++++ +.++++.|.+.++.++
T Consensus 209 ad~~~~d~~G~TpL~~A~~~~~---i~~lL~~l~~~~~~~~ 246 (269)
T 4b93_B 209 ASVQVLNKRQRTAVDCAEQNSK---IMELLQVVPSCVASLD 246 (269)
T ss_dssp CCSCCCCTTSCCSGGGSCTTCH---HHHHTTC---------
T ss_pred CCCCCcCCCCCCHHHHHHhCCc---HHHHHHHHHHhchhhh
Confidence 9999999999999999887764 1224555555555443
No 25
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.5e-38 Score=314.72 Aligned_cols=228 Identities=18% Similarity=0.168 Sum_probs=201.9
Q ss_pred cccCCCCCCCHHHHHHHHcCCHHHHHHHHH----cCCCCccccCCCCchhhhhccchhHHhhhccchHHHHHHhcCCHHH
Q 048228 128 VFGEGEYGVTDILYAAARSKNSEVFRLLLD----NAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDI 203 (629)
Q Consensus 128 ~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~----~Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~i 203 (629)
++.+|.+|.||||+| +..|+.+++++|++ .|++++..+ ..|.||||+|+..|+.++
T Consensus 2 ~~~~d~~g~t~L~~A-~~~g~~~~v~~Ll~~~~~~~~~~~~~~-------------------~~g~t~L~~A~~~~~~~~ 61 (241)
T 1k1a_A 2 ATRADEDGDTPLHIA-VVQGNLPAVHRLVNLFQQGGRELDIYN-------------------NLRQTPLHLAVITTLPSV 61 (241)
T ss_dssp -----CTTCCHHHHH-HHTTCHHHHHHHHHHHHHTTCCSCCCC-------------------TTSCCHHHHHHHTTCHHH
T ss_pred ccccCCCCCcHHHHH-HHcCCHHHHHHHHHHHHhcCCCCCccc-------------------ccCCCHHHHHHHcCCHHH
Confidence 356789999999998 78899999999997 788877553 458899999999999999
Q ss_pred HHHHHhCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCC----CccccCCCCCchHHHHHhcCCCCCccccccHHH
Q 048228 204 LRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPS----LISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQ 277 (629)
Q Consensus 204 v~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~ga----din~~d~~g~TpLh~A~~~~~~~~~~~~~~~~e 277 (629)
+++|+++|++++. .+..|.||||+|+..++.++ +|++.+. +++..|..|.||||+|+. .++.+
T Consensus 62 v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~----------~~~~~ 130 (241)
T 1k1a_A 62 VRLLVTAGASPMA-LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN----------TECQE 130 (241)
T ss_dssp HHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHH----------HTCHH
T ss_pred HHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHH----------cCCHH
Confidence 9999999999985 89999999999999999999 5666665 899999999999999999 59999
Q ss_pred HHHHHHcCCCCcchhhhccCC-cCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHH
Q 048228 278 LMEQLVSGKIVEVKDIINVTN-NNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILI 356 (629)
Q Consensus 278 ivk~Ll~~g~~d~~a~in~~d-~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv 356 (629)
++++|++.| ++++..+ ..|.||||+|+..+ +.+++++|++ .|+++|.+|..|.||||+|+..++.+ ++
T Consensus 131 ~~~~Ll~~g-----~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~----~v 199 (241)
T 1k1a_A 131 TVQLLLERG-----ADIDAVDIKSGRSPLIHAVENN-SLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLP----LV 199 (241)
T ss_dssp HHHHHHHTT-----CCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHH----HH
T ss_pred HHHHHHHcC-----CCcccccccCCCcHHHHHHHcC-CHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHH----HH
Confidence 999999999 6689888 88999999999999 9999999999 99999999999999999999999988 99
Q ss_pred HHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcCC
Q 048228 357 KQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTGI 407 (629)
Q Consensus 357 ~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Ga 407 (629)
++|+++|++++.+|..|+|||++|+..+ +.++++.|+++++
T Consensus 200 ~~Ll~~ga~~~~~~~~g~tpl~~A~~~~----------~~~i~~~l~~~~a 240 (241)
T 1k1a_A 200 RTLVRSGADSSLKNCHNDTPLMVARSRR----------VIDILRGKATRPA 240 (241)
T ss_dssp HHHHHTTCCTTCCCTTSCCTTTTCSSHH----------HHHHHTC------
T ss_pred HHHHhcCCCCCCcCCCCCCHHHHHHhcC----------cHHHHhhhccCCC
Confidence 9999999999999999999999999876 6999999998876
No 26
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.6e-37 Score=306.90 Aligned_cols=215 Identities=19% Similarity=0.267 Sum_probs=200.7
Q ss_pred cccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHH
Q 048228 128 VFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQL 207 (629)
Q Consensus 128 ~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~L 207 (629)
.+..|..|.||||+| +..|+.+++++|+++|++++..+ ..|.||||+|+..|+.++|++|
T Consensus 4 ~~~~~~~g~t~L~~A-~~~g~~~~v~~Ll~~g~~~~~~~-------------------~~g~t~L~~A~~~~~~~~v~~L 63 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAA-AEAGHVDICHMLVQAGANIDTCS-------------------EDQRTPLMEAAENNHLEAVKYL 63 (237)
T ss_dssp CCCSSCCSCCHHHHH-HHHTCHHHHHHHHHTTCCTTCCC-------------------TTCCCHHHHHHHTTCHHHHHHH
T ss_pred cccccCCCCCHHHHH-HHcCcHHHHHHHHHcCCCcCccC-------------------CCCCCHHHHHHHhCCHHHHHHH
Confidence 467889999999998 77799999999999999888653 3478999999999999999999
Q ss_pred HhCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCC-CCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHc
Q 048228 208 LGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSP-SLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVS 284 (629)
Q Consensus 208 l~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~g-adin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~ 284 (629)
+++|++++. .+..|.||||+|+..|+.++ +|++.| ++++..+..|.||||+|+. .++.+++++|++
T Consensus 64 l~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~----------~~~~~~~~~Ll~ 132 (237)
T 3b7b_A 64 IKAGALVDP-KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE----------YKHVDLVKLLLS 132 (237)
T ss_dssp HTTTCCCCC-CCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHH----------TTCHHHHHHHHH
T ss_pred HhCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHH----------cCCHHHHHHHHH
Confidence 999999985 99999999999999999999 555555 8999999999999999999 599999999999
Q ss_pred CCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCC
Q 048228 285 GKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGG 364 (629)
Q Consensus 285 ~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Ga 364 (629)
.| ++++.++..|.||||+|+..+ +.+++++|++ .|++++.+|..|.||||+|+..++.+ ++++|+++|+
T Consensus 133 ~g-----~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga 201 (237)
T 3b7b_A 133 KG-----SDINIRDNEENICLHWAAFSG-CVDIAEILLA-AKCDLHAVNIHGDSPLHIAARENRYD----CVVLFLSRDS 201 (237)
T ss_dssp TT-----CCTTCCCTTSCCHHHHHHHHC-CHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHTTTC
T ss_pred CC-----CCCCccCCCCCCHHHHHHHCC-CHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHh----HHHHHHHcCC
Confidence 99 669999999999999999999 9999999999 99999999999999999999999988 9999999999
Q ss_pred CCCCCCCCCccHHHHHHHhC
Q 048228 365 ISNCQDNVARNAIACHLKGQ 384 (629)
Q Consensus 365 dvn~~d~~G~TpL~~A~~~~ 384 (629)
|++.+|..|+|||++|+..+
T Consensus 202 d~~~~d~~g~t~l~~A~~~~ 221 (237)
T 3b7b_A 202 DVTLKNKEGETPLQCASLNS 221 (237)
T ss_dssp CTTCCCTTSCCHHHHSCTTC
T ss_pred CCCccCCCCCCHHHHHHHHH
Confidence 99999999999999999876
No 27
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.2e-39 Score=323.59 Aligned_cols=220 Identities=19% Similarity=0.203 Sum_probs=171.5
Q ss_pred cCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhccchhHHhhhccchHHHHHHhcCCH-HHHHHHH
Q 048228 130 GEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNL-DILRQLL 208 (629)
Q Consensus 130 ~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~-~iv~~Ll 208 (629)
.+|..+.+||+.| +..|+.++|++||++|++...... ......+..|.||||.|+..++. .++++|+
T Consensus 6 kkd~~~~~~L~~A-~~~G~~~~v~~LL~~~~~~~~~~~-----------~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll 73 (269)
T 4b93_B 6 KKDYREVEKLLRA-VADGDLEMVRYLLEWTEEDLEDAE-----------DTVSAADPEFCHPLCQCPKCAPAQKRLAKVP 73 (269)
T ss_dssp -CCCHHHHHHHHH-HHTTCHHHHHHHHTCC--------------------------------------------------
T ss_pred ccCccchhHHHHH-HHcCCHHHHHHHHHCCCccccccc-----------ccccccCccCCCHHHHHHHhCCHHHHHHHHH
Confidence 3577788999998 788999999999999986542211 12234566788999999988875 4899999
Q ss_pred hCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCC
Q 048228 209 GDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGK 286 (629)
Q Consensus 209 ~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g 286 (629)
+.|++++. .|..|+||||+|+..|+.++ +|+..|++++..+..|.||||+|+. .++.+++++|++.|
T Consensus 74 ~~Gadvn~-~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~----------~~~~~~~~~Ll~~g 142 (269)
T 4b93_B 74 ASGLGVNV-TSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQ----------QGHFQVVKCLLDSN 142 (269)
T ss_dssp -CCCCTTC-CCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHH----------HTCHHHHHHHHHTT
T ss_pred HCCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccc----------cChHHHHHHHHHCC
Confidence 99999995 99999999999999999999 8888999999999999999999999 59999999999999
Q ss_pred CCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCC
Q 048228 287 IVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGIS 366 (629)
Q Consensus 287 ~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadv 366 (629)
+++|.+|..|+||||+||..| +.++|++||+ .|+|+|.+|..|+||||+|+..|+.+ ++++|+++|+|+
T Consensus 143 -----~~~n~~d~~g~TpL~~A~~~g-~~~~v~~Ll~-~gadvn~~~~~g~t~Lh~A~~~g~~~----~v~~Ll~~Gad~ 211 (269)
T 4b93_B 143 -----AKPNKKDLSGNTPLIYACSGG-HHELVALLLQ-HGASINASNNKGNTALHEAVIEKHVF----VVELLLLHGASV 211 (269)
T ss_dssp -----CCSCCCCTTCCCHHHHHHHTT-CGGGHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHH----HHHHHHHTTCCS
T ss_pred -----CCCCCCCCCCCCHHHHHHHCC-CHHHHHHHHH-CCCCCCccccCCCcHHHHHHHcCCHH----HHHHHHHCCCCC
Confidence 669999999999999999999 9999999999 99999999999999999999999988 999999999999
Q ss_pred CCCCCCCccHHHHHHHh
Q 048228 367 NCQDNVARNAIACHLKG 383 (629)
Q Consensus 367 n~~d~~G~TpL~~A~~~ 383 (629)
|.+|..|+||||+|++.
T Consensus 212 ~~~d~~G~TpL~~A~~~ 228 (269)
T 4b93_B 212 QVLNKRQRTAVDCAEQN 228 (269)
T ss_dssp CCCCTTSCCSGGGSCTT
T ss_pred CCcCCCCCCHHHHHHhC
Confidence 99999999999999754
No 28
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.4e-38 Score=324.16 Aligned_cols=247 Identities=21% Similarity=0.206 Sum_probs=182.3
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhcc
Q 048228 99 GYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSD 178 (629)
Q Consensus 99 ~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~ 178 (629)
..|.||||.||..|+.++|++||++|++ ++..|..|.||||+| +..|+.+++++|+++|++++..+
T Consensus 38 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A-~~~g~~~~v~~Ll~~ga~~~~~~------------ 103 (299)
T 1s70_B 38 FDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQA-CIDDNVDMVKFLVENGANINQPD------------ 103 (299)
T ss_dssp ECHHHHHHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHH-HHTTCHHHHHHHHHTTCCTTCCC------------
T ss_pred cCCccHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHH-HHcCCHHHHHHHHHCCCCCCCCC------------
Confidence 3567778888888888888888877776 466777778887777 66678888888888877776443
Q ss_pred chhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcce---ecccCCCCccccCCCCCc
Q 048228 179 SYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV---LIAKSPSLISVTNSHGDT 255 (629)
Q Consensus 179 ~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~i---lL~~~gadin~~d~~g~T 255 (629)
..|+||||+|+..|+.++|++|+++|++++. .+..|.||||+|+..++.++ ++...+.+++..+..+.+
T Consensus 104 -------~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 175 (299)
T 1s70_B 104 -------NEGWIPLHAAASCGYLDIAEYLISQGAHVGA-VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEER 175 (299)
T ss_dssp -------TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred -------CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC-cCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhh
Confidence 3367788888888888888888888887774 77778888888877777666 555566666554443333
Q ss_pred hHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCC
Q 048228 256 FLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGE 335 (629)
Q Consensus 256 pLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~ 335 (629)
+++. .+..++..+..+ ....+..|.||||+|+..| +.++|++|++ .|+++|.+|..
T Consensus 176 ~~~~------------------~~~~~l~~~~~~----~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~-~g~d~~~~d~~ 231 (299)
T 1s70_B 176 IMLR------------------DARQWLNSGHIN----DVRHAKSGGTALHVAAAKG-YTEVLKLLIQ-ARYDVNIKDYD 231 (299)
T ss_dssp HHHH------------------HHHHHHHHTCCC----CCCCTTTCCCHHHHHHHHT-CHHHHHHHHT-TTCCTTCCCTT
T ss_pred HHHH------------------HHHHHHhccCcc----hhhhcCCCCCHHHHHHHCC-cHHHHHHHHH-cCCCCCCcCCC
Confidence 3332 233344444222 4556778899999999998 8999999998 89999999999
Q ss_pred CCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcC
Q 048228 336 GMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTG 406 (629)
Q Consensus 336 G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~G 406 (629)
|.||||+|+..|+.+ ++++|+++|+|++.+|..|+|||++|... ..+.++.|++..
T Consensus 232 g~tpL~~A~~~~~~~----~v~~Ll~~gad~~~~d~~g~t~l~~A~~~-----------~~~~l~~l~~~~ 287 (299)
T 1s70_B 232 GWTPLHAAAHWGKEE----ACRILVENLCDMEAVNKVGQTAFDVADED-----------ILGYLEELQKKQ 287 (299)
T ss_dssp CCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCTTTSCCSG-----------GGHHHHHHHHHT
T ss_pred CCcHHHHHHhcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHH-----------HHHHHHHHHHHH
Confidence 999999999999877 88899999999999999999999888653 255666666543
No 29
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.1e-37 Score=306.93 Aligned_cols=227 Identities=20% Similarity=0.189 Sum_probs=209.0
Q ss_pred CCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCC
Q 048228 132 GEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDC 211 (629)
Q Consensus 132 d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~g 211 (629)
+..+.+||++| +..|+.+++++|++.+.... ...+..|.||||+|+..|+.++|++|+++|
T Consensus 3 ~~~~~~~l~~A-~~~g~~~~v~~ll~~~~~~~------------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 63 (231)
T 3aji_A 3 GCVSNIMICNL-AYSGKLDELKERILADKSLA------------------TRTDQDSRTALHWACSAGHTEIVEFLLQLG 63 (231)
T ss_dssp CCCSSSHHHHH-HHHTCHHHHHHHHHHCGGGG------------------GCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CccccchHHHH-HHhCCHHHHHHHHHhchhhh------------------hcCCCCCCCHHHHHHHcCcHHHHHHHHHhC
Confidence 45678999998 77899999999999764321 223566899999999999999999999999
Q ss_pred CCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCc
Q 048228 212 ENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVE 289 (629)
Q Consensus 212 ad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d 289 (629)
++++. .|..|.||||+|+..|+.++ +|++.|++++.+|..|.||||+|+. .++.+++++|++.|
T Consensus 64 ~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----------~~~~~~~~~Ll~~g--- 129 (231)
T 3aji_A 64 VPVND-KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAAS----------KNRHEIAVMLLEGG--- 129 (231)
T ss_dssp CCSCC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----------TTCHHHHHHHHHTT---
T ss_pred CCCCC-cCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH----------cCCHHHHHHHHHcC---
Confidence 99995 99999999999999999999 8888999999999999999999999 59999999999999
Q ss_pred chhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCC
Q 048228 290 VKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQ 369 (629)
Q Consensus 290 ~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~ 369 (629)
++++.++..|.||||+|+..+ +.+++++|++ .|+++|.+|..|.||||+|+..++.+ ++++|+++|++++.+
T Consensus 130 --~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~ 201 (231)
T 3aji_A 130 --ANPDAKDHYDATAMHRAAAKG-NLKMVHILLF-YKASTNIQDTEGNTPLHLACDEERVE----EAKFLVTQGASIYIE 201 (231)
T ss_dssp --CCTTCCCTTSCCHHHHHHHHT-CHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCSCCC
T ss_pred --CCCCCcCCCCCcHHHHHHHcC-CHHHHHHHHh-cCCCccccCCCCCCHHHHHHHCCCHH----HHHHHHHCCCCCCCC
Confidence 669999999999999999999 9999999999 99999999999999999999999988 999999999999999
Q ss_pred CCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcCCCC
Q 048228 370 DNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTGIEN 409 (629)
Q Consensus 370 d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad~ 409 (629)
|..|+|||++|+..+ +.+++++|+++|+++
T Consensus 202 ~~~g~t~l~~A~~~~----------~~~i~~lL~~~~a~i 231 (231)
T 3aji_A 202 NKEEKTPLQVAKGGL----------GLILKRLAEGEEASM 231 (231)
T ss_dssp CTTSCCHHHHSCHHH----------HHHHHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHhhH----------HHHHHHHHccccccC
Confidence 999999999998776 689999999999874
No 30
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=4.1e-37 Score=301.92 Aligned_cols=212 Identities=20% Similarity=0.261 Sum_probs=162.9
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhccch
Q 048228 101 GGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSY 180 (629)
Q Consensus 101 g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~ 180 (629)
|.||||+||..|+.++|++|++.++......|..|.||||+| +..|+.+++++|+++|++++...
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~~~~~~~~~~-------------- 66 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS-VSFQAHEITSFLLSKMENVNLDD-------------- 66 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHH-HHTTCHHHHHHHHHTCTTCCGGG--------------
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHH-HHcCCHHHHHHHHhccccccccc--------------
Confidence 789999999999999999999999887777899999999998 77899999999999996554321
Q ss_pred hHHhhhccchHHHHHHhcCCHHHHHHHHhCC--CCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCCCch
Q 048228 181 SVFKWEMMNRAVHAVARGGNLDILRQLLGDC--ENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTF 256 (629)
Q Consensus 181 ~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~g--ad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~Tp 256 (629)
..+..|.||||+|+..|+.+++++|+++| ++++. .+..|.||||+|+..++.++ +|++.|++++.+|..|.||
T Consensus 67 --~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 143 (228)
T 2dzn_A 67 --YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK-ITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIP 143 (228)
T ss_dssp --CCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCH
T ss_pred --cCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccc-CCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCH
Confidence 13456889999999999999999999998 67764 67777777777777777666 5556667777777777777
Q ss_pred HHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHh-cCCCCCcccCCCC
Q 048228 257 LHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLM-TVPSINLNIQDGE 335 (629)
Q Consensus 257 Lh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll-~~~gadvn~~d~~ 335 (629)
||+|+. .++.+++++|++.|..+ ++.+|..|+||||+|+..+ +.+++++|+ + .|+|++.+|..
T Consensus 144 L~~A~~----------~~~~~~v~~Ll~~g~~~----~~~~d~~g~t~L~~A~~~~-~~~~v~~Ll~~-~ga~~~~~~~~ 207 (228)
T 2dzn_A 144 LHRAAS----------VGSLKLIELLCGLGKSA----VNWQDKQGWTPLFHALAEG-HGDAAVLLVEK-YGAEYDLVDNK 207 (228)
T ss_dssp HHHHHH----------TTCHHHHHHHHTTTCCC----SCCCCTTSCCHHHHHHHTT-CHHHHHHHHHH-HCCCSCCBCTT
T ss_pred HHHHHH----------cCCHHHHHHHHhcCccc----ccCcCCCCCCHHHHHHHcC-CHHHHHHHHHh-cCCCCCccCCC
Confidence 777776 36677777777666333 6667777777777777776 777777777 5 67777777777
Q ss_pred CCcHHHHHHhC
Q 048228 336 GMTPLDLLKQH 346 (629)
Q Consensus 336 G~TpLh~A~~~ 346 (629)
|+||||+|+..
T Consensus 208 g~t~l~~A~~~ 218 (228)
T 2dzn_A 208 GAKAEDVALNE 218 (228)
T ss_dssp SCBGGGGCSST
T ss_pred CCcHHHHHHHH
Confidence 77777777554
No 31
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=7.9e-38 Score=318.87 Aligned_cols=183 Identities=15% Similarity=0.142 Sum_probs=116.1
Q ss_pred hHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCC-CchHHHHHhcCCC
Q 048228 190 RAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHG-DTFLHMVVAGFRS 266 (629)
Q Consensus 190 t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g-~TpLh~A~~~~~~ 266 (629)
||||+|+..|+.++|++|+++|++++. .|..|.||||+|+..|+.++ +|++.|++++..|..| .||||+|+.
T Consensus 64 t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~---- 138 (285)
T 3kea_A 64 FPLHQAATLEDTKIVKILLFSGLDDSQ-FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM---- 138 (285)
T ss_dssp CHHHHHTTSSSCHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHH----
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHH----
Confidence 444444444444444444444444442 44444444444444444444 3333445555556666 577777777
Q ss_pred CCccccccHHHHHHHHHcCCCCcchhhhccCCc-CCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcH-HHHHH
Q 048228 267 PGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNN-NGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTP-LDLLK 344 (629)
Q Consensus 267 ~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~-~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~Tp-Lh~A~ 344 (629)
.++.+++++|+++| +++ .+. .|.||||+|+..+ +.+++++|++ +|+++|.+|..|+|| ||+|+
T Consensus 139 ------~~~~~~v~~Ll~~g-----~~~--~~~~~g~t~L~~A~~~g-~~~~v~~Ll~-~gad~n~~~~~g~t~~L~~A~ 203 (285)
T 3kea_A 139 ------LNDVSIVSYFLSEI-----PST--FDLAILLSCIHITIKNG-HVDMMILLLD-YMTSTNTNNSLLFIPDIKLAI 203 (285)
T ss_dssp ------TTCHHHHHHHHTTS-----CTT--CCCSTHHHHHHHHHHTT-CHHHHHHHHH-HHHHTCTTCCCBCCTTHHHHH
T ss_pred ------cCCHHHHHHHHhCC-----Ccc--ccccCCccHHHHHHHcC-hHHHHHHHHH-cCCCCCcccCCCCChHHHHHH
Confidence 47778888888777 222 333 7778888888877 7888888888 788888888888776 88888
Q ss_pred hCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcCCCCcccc
Q 048228 345 QHPRSASSEILIKQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTGIENASDA 413 (629)
Q Consensus 345 ~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~d 413 (629)
..++.+ ++++|+++|+|++.+|.. |+..+ +.+++++|+++|+++....
T Consensus 204 ~~~~~~----~v~~Ll~~gad~~~~~~~-------a~~~~----------~~~iv~~Ll~~g~~~~~~~ 251 (285)
T 3kea_A 204 DNKDIE----MLQALFKYDINIYSANLE-------NVLLD----------DAEIAKMIIEKHVEYKSDS 251 (285)
T ss_dssp HHTCHH----HHHHHTTSCBCSTTTTGG-------GGTTT----------CHHHHHHHHHHHHHHTTCT
T ss_pred HcCCHH----HHHHHHHcCCCCCCCChh-------hhhcC----------CHHHHHHHHHcCCCCCCcc
Confidence 877766 777888888888777742 22222 5788888888887766443
No 32
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=300.51 Aligned_cols=233 Identities=20% Similarity=0.244 Sum_probs=194.2
Q ss_pred cccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchh
Q 048228 94 SLIRAGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFE 173 (629)
Q Consensus 94 ~~~~d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~ 173 (629)
++..|.+|.|+||.|+..|+.++|++|++.|++ ++..+..|.||||+| +..|+.+++++|+++|++++...
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~~~~~~~~~~------- 72 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWA-AINNRIDLVKYYISKGAIVDQLG------- 72 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH-HHTTCHHHHHHHHHTTCCTTCCB-------
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHHcCCC-cCCCCCCCCCHHHHH-HHhCCHHHHHHHHHcCCcchhhc-------
Confidence 445677888888888888888888888888877 577788888888887 77788888888888888776442
Q ss_pred hhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCC
Q 048228 174 EKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNS 251 (629)
Q Consensus 174 ~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~ 251 (629)
+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.++ +|++.|++++..+.
T Consensus 73 -----------~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~ 140 (240)
T 3eu9_A 73 -----------GDLNSTPLHWATRQGHLSMVVQLMKYGADPSL-IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ 140 (240)
T ss_dssp -----------TTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred -----------CCcCCChhHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCC
Confidence 23367888888888888888888888888885 88888888888888888888 77778888888899
Q ss_pred CCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCc-CCchHHHHHHHcCCcHHHHHHHhcCCCCCcc
Q 048228 252 HGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNN-NGRTALHLAVSENIQCNLVELLMTVPSINLN 330 (629)
Q Consensus 252 ~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~-~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn 330 (629)
.|.||||+|+.. ....+++++|++.+ ++++..+. .|.||||+|+..+ +.+++++|++ +|++++
T Consensus 141 ~g~t~l~~a~~~---------~~~~~~~~~L~~~~-----~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~g~~~~ 204 (240)
T 3eu9_A 141 NGMTPLMWAAYR---------THSVDPTRLLLTFN-----VSVNLGDKYHKNTALHWAVLAG-NTTVISLLLE-AGANVD 204 (240)
T ss_dssp TSCCHHHHHHHH---------CCSSTTHHHHHHTT-----CCTTCCCTTTCCCHHHHHHHHT-CHHHHHHHHH-HTCCTT
T ss_pred CCCcHHHHHHHh---------CChHHHHHHHHhcC-----CCcchhhccCCCcHHHHHHHcC-CHHHHHHHHH-cCCCCC
Confidence 999999999964 24478899999998 56888887 8999999999999 9999999999 899999
Q ss_pred cCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCC
Q 048228 331 IQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISN 367 (629)
Q Consensus 331 ~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn 367 (629)
.+|..|.||||+|+..++.+ ++++|+++|++..
T Consensus 205 ~~~~~g~t~l~~A~~~~~~~----~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 205 AQNIKGESALDLAKQRKNVW----MINHLQEARQAKG 237 (240)
T ss_dssp CBCTTSCBHHHHHHHTTCHH----HHHHHHHHC----
T ss_pred CcCCCCCCHHHHHHHcCcHH----HHHHHHHhhhccC
Confidence 99999999999999999988 8999999888754
No 33
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.7e-37 Score=314.90 Aligned_cols=245 Identities=15% Similarity=0.110 Sum_probs=217.1
Q ss_pred hcCcHHHHHHHhhcccccCCCcccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHH
Q 048228 73 KCRSSVARKLLHDCETKKGHNSLIRAGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVF 152 (629)
Q Consensus 73 ~~~~~~i~~lL~~~~~~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv 152 (629)
.....++.++|.+ . +++.+|..|.||||+||..|+.++|++|+++|++. +.. +|.||||+| +..|+.+++
T Consensus 9 ~~~~~~v~~lL~~----~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A-~~~g~~~~v 78 (285)
T 3kea_A 9 TWKSKQLKSFLSS----K--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQA-ATLEDTKIV 78 (285)
T ss_dssp GCCHHHHHHHHHS----T--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHH-TTSSSCHHH
T ss_pred hcCHHHHHHHHHh----C--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHH-HHcCCHHHH
Confidence 3467888999987 3 68889999999999999999999999999999874 444 499999998 888999999
Q ss_pred HHHHHcCCCCccccCCCCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCC-CcHHHHHHh
Q 048228 153 RLLLDNAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQG-STILHSASG 231 (629)
Q Consensus 153 ~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g-~TpLh~A~~ 231 (629)
++|+++|++++..+ ..|+||||+|+..|+.++|++|+++|++++. .+..| .||||+|+.
T Consensus 79 ~~Ll~~ga~~~~~d-------------------~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~g~~t~L~~A~~ 138 (285)
T 3kea_A 79 KILLFSGLDDSQFD-------------------DKGNTALYYAVDSGNMQTVKLFVKKNWRLMF-YGKTGWKTSFYHAVM 138 (285)
T ss_dssp HHHHHTTCCTTCCC-------------------TTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG-CSSSGGGSHHHHHHH
T ss_pred HHHHHCCCCCCCcC-------------------CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCc-cCCCCCCCHHHHHHH
Confidence 99999999988653 4478999999999999999999999999995 89999 899999999
Q ss_pred cCCcce--ecccCCCCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchH-HHHH
Q 048228 232 RGQVEV--LIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTA-LHLA 308 (629)
Q Consensus 232 ~g~~~i--lL~~~gadin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~Tp-Lh~A 308 (629)
.|+.++ +|++.|+++... ..|.||||+|+. .++.+++++|+++| +++|.+|..|+|| ||+|
T Consensus 139 ~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~----------~g~~~~v~~Ll~~g-----ad~n~~~~~g~t~~L~~A 202 (285)
T 3kea_A 139 LNDVSIVSYFLSEIPSTFDL-AILLSCIHITIK----------NGHVDMMILLLDYM-----TSTNTNNSLLFIPDIKLA 202 (285)
T ss_dssp TTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHH----------TTCHHHHHHHHHHH-----HHTCTTCCCBCCTTHHHH
T ss_pred cCCHHHHHHHHhCCCccccc-cCCccHHHHHHH----------cChHHHHHHHHHcC-----CCCCcccCCCCChHHHHH
Confidence 999999 777788776332 289999999999 59999999999999 7899999999998 9999
Q ss_pred HHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccH
Q 048228 309 VSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNA 376 (629)
Q Consensus 309 ~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~Tp 376 (629)
+..+ +.+++++|++ +|+|+|.+|. .|+..++.+ ++++|+++|++++.........
T Consensus 203 ~~~~-~~~~v~~Ll~-~gad~~~~~~-------~a~~~~~~~----iv~~Ll~~g~~~~~~~~~~~~~ 257 (285)
T 3kea_A 203 IDNK-DIEMLQALFK-YDINIYSANL-------ENVLLDDAE----IAKMIIEKHVEYKSDSYTKDLD 257 (285)
T ss_dssp HHHT-CHHHHHHHTT-SCBCSTTTTG-------GGGTTTCHH----HHHHHHHHHHHHTTCTTTTTCH
T ss_pred HHcC-CHHHHHHHHH-cCCCCCCCCh-------hhhhcCCHH----HHHHHHHcCCCCCCccccchHH
Confidence 9999 9999999999 9999999983 567788877 9999999999998776655544
No 34
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=299.46 Aligned_cols=232 Identities=18% Similarity=0.172 Sum_probs=211.6
Q ss_pred ccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHH
Q 048228 129 FGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLL 208 (629)
Q Consensus 129 ~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll 208 (629)
+..|.+|.|||++| +..|+.+++++|++.|++++... ..|.||||+|+..|+.++|++|+
T Consensus 3 ~~~d~~~~~~l~~A-~~~g~~~~~~~Ll~~g~~~~~~~-------------------~~g~t~L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 3 THIDDYSTWDIVKA-TQYGIYERCRELVEAGYDVRQPD-------------------KENVTLLHWAAINNRIDLVKYYI 62 (240)
T ss_dssp CCCSCGGGCCHHHH-HHTTCHHHHHHHHHTTCCTTCCC-------------------TTSCCHHHHHHHTTCHHHHHHHH
T ss_pred cccccccchHHHHH-HHcCChHHHHHHHHcCCCcCCCC-------------------CCCCCHHHHHHHhCCHHHHHHHH
Confidence 45688899999998 88899999999999999887553 44789999999999999999999
Q ss_pred hCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCC
Q 048228 209 GDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGK 286 (629)
Q Consensus 209 ~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g 286 (629)
++|++++...+..|.||||+|+..|+.++ +|++.|++++..+..|.||||+|+. .++.+++++|++.|
T Consensus 63 ~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~----------~~~~~~~~~Ll~~~ 132 (240)
T 3eu9_A 63 SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ----------FGHTSIVAYLIAKG 132 (240)
T ss_dssp HTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----------TTCHHHHHHHHHTT
T ss_pred HcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH----------cCHHHHHHHHHhcC
Confidence 99999987667779999999999999999 7788899999999999999999999 59999999999999
Q ss_pred CCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCC-CCCcHHHHHHhCCCCchHHHHHHHHHHcCCC
Q 048228 287 IVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDG-EGMTPLDLLKQHPRSASSEILIKQLISAGGI 365 (629)
Q Consensus 287 ~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~-~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gad 365 (629)
++++.++..|.||||+|+..+...+++++|++ .|++++..+. .|.||||+|+..++.+ ++++|+++|++
T Consensus 133 -----~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~-~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~ 202 (240)
T 3eu9_A 133 -----QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT-FNVSVNLGDKYHKNTALHWAVLAGNTT----VISLLLEAGAN 202 (240)
T ss_dssp -----CCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHH-TTCCTTCCCTTTCCCHHHHHHHHTCHH----HHHHHHHHTCC
T ss_pred -----CCccccCCCCCcHHHHHHHhCChHHHHHHHHh-cCCCcchhhccCCCcHHHHHHHcCCHH----HHHHHHHcCCC
Confidence 66999999999999999977735899999999 9999999997 8999999999999988 99999999999
Q ss_pred CCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcCCCCc
Q 048228 366 SNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTGIENA 410 (629)
Q Consensus 366 vn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad~~ 410 (629)
++.+|..|+|||++|+..+ +.+++++|+++|++..
T Consensus 203 ~~~~~~~g~t~l~~A~~~~----------~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 203 VDAQNIKGESALDLAKQRK----------NVWMINHLQEARQAKG 237 (240)
T ss_dssp TTCBCTTSCBHHHHHHHTT----------CHHHHHHHHHHC----
T ss_pred CCCcCCCCCCHHHHHHHcC----------cHHHHHHHHHhhhccC
Confidence 9999999999999999987 6999999999998764
No 35
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=9.1e-37 Score=299.42 Aligned_cols=218 Identities=22% Similarity=0.193 Sum_probs=197.5
Q ss_pred CCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCC--C
Q 048228 135 GVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDC--E 212 (629)
Q Consensus 135 g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~g--a 212 (629)
|.||||+| +..|+.+++++|++.|.++... .+..|+||||+|+..|+.+++++|+++| +
T Consensus 2 g~t~L~~A-~~~g~~~~v~~Ll~~~~~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~ 62 (228)
T 2dzn_A 2 SNYPLHQA-CMENEFFKVQELLHSKPSLLLQ------------------KDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62 (228)
T ss_dssp -CCHHHHH-HHTTCHHHHHHHHHHCGGGTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTC
T ss_pred CccHHHHH-HHhCCHHHHHHHHhcCcccccc------------------CCCCCCCHHHHHHHcCCHHHHHHHHhccccc
Confidence 78999998 7889999999999998765432 3456889999999999999999999999 6
Q ss_pred CcccccCCCCCcHHHHHHhcCCcce--ecccCC--CCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCC
Q 048228 213 NVLAYRDVQGSTILHSASGRGQVEV--LIAKSP--SLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIV 288 (629)
Q Consensus 213 d~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~g--adin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~ 288 (629)
+++...+..|.||||+|+..|+.++ +|++.| ++++..|..|.||||+|+. .++.+++++|++.|
T Consensus 63 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~----------~~~~~~~~~Ll~~g-- 130 (228)
T 2dzn_A 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG----------KKWFEVSQFLIENG-- 130 (228)
T ss_dssp CGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHH----------TTCHHHHHHHHHTT--
T ss_pred cccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHH----------cCCHhHHHHHHHcC--
Confidence 6664478999999999999999999 777777 8999999999999999999 59999999999999
Q ss_pred cchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCC-CCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHH-HcCCCC
Q 048228 289 EVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPS-INLNIQDGEGMTPLDLLKQHPRSASSEILIKQLI-SAGGIS 366 (629)
Q Consensus 289 d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~g-advn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll-~~Gadv 366 (629)
++++.+|..|+||||+|+..+ +.+++++|++ .| +++|.+|..|+||||+|+..++.+ ++++|+ ++|+|+
T Consensus 131 ---~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~g~~~~~~~d~~g~t~L~~A~~~~~~~----~v~~Ll~~~ga~~ 201 (228)
T 2dzn_A 131 ---ASVRIKDKFNQIPLHRAASVG-SLKLIELLCG-LGKSAVNWQDKQGWTPLFHALAEGHGD----AAVLLVEKYGAEY 201 (228)
T ss_dssp ---CCSCCCCTTSCCHHHHHHHTT-CHHHHHHHHT-TTCCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHHHCCCS
T ss_pred ---CCccccCCCCCCHHHHHHHcC-CHHHHHHHHh-cCcccccCcCCCCCCHHHHHHHcCCHH----HHHHHHHhcCCCC
Confidence 669999999999999999999 9999999999 88 999999999999999999999988 999999 899999
Q ss_pred CCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHc
Q 048228 367 NCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYT 405 (629)
Q Consensus 367 n~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~ 405 (629)
+.+|..|+|||++|+. .+++++|+++
T Consensus 202 ~~~~~~g~t~l~~A~~-------------~~~~~~l~~~ 227 (228)
T 2dzn_A 202 DLVDNKGAKAEDVALN-------------EQVKKFFLNN 227 (228)
T ss_dssp CCBCTTSCBGGGGCSS-------------TTHHHHHHTT
T ss_pred CccCCCCCcHHHHHHH-------------HHHHHHHHhc
Confidence 9999999999999864 3678888764
No 36
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.6e-36 Score=296.77 Aligned_cols=216 Identities=18% Similarity=0.180 Sum_probs=196.1
Q ss_pred cCCHHHHHHHHHcCCCCccccCCCCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcH
Q 048228 146 SKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTI 225 (629)
Q Consensus 146 ~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~Tp 225 (629)
.|+.+++++|+++|++++... +..|+||||+|+..|+.++|++|+++|++++. .+..|.||
T Consensus 1 gg~~~~i~~Ll~~g~~~~~~~------------------d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~ 61 (223)
T 2f8y_A 1 GDAPAVISDFIYQGASLHNQT------------------DRTGETALHLAARYSRSDAAKRLLEASADANI-QDNMGRTP 61 (223)
T ss_dssp ----CCEETTEETTCCTTCCC------------------TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCH
T ss_pred CCcHHHHHHHHHcCCCccccc------------------CCCCCchHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCH
Confidence 367889999999999887542 34588999999999999999999999999995 99999999
Q ss_pred HHHHHhcCCcce--ecccCC-CCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCc
Q 048228 226 LHSASGRGQVEV--LIAKSP-SLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGR 302 (629)
Q Consensus 226 Lh~A~~~g~~~i--lL~~~g-adin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~ 302 (629)
||+|+..++.++ +|++.+ .+++..+..|.||||+|+. .++.+++++|++.+ ++++.+|..|+
T Consensus 62 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~----------~~~~~~~~~Ll~~g-----~~~~~~~~~g~ 126 (223)
T 2f8y_A 62 LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR----------LAVEGMLEDLINSH-----ADVNAVDDLGK 126 (223)
T ss_dssp HHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHH----------HTCHHHHHHHHHTT-----CCTTCBCTTSC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHH----------hCcHHHHHHHHHcC-----CCCcCcCCCCC
Confidence 999999999999 444444 4999999999999999999 59999999999999 66999999999
Q ss_pred hHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHHHHHH
Q 048228 303 TALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNAIACHLK 382 (629)
Q Consensus 303 TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~ 382 (629)
||||+|+..+ +.+++++|++ .|++++.+|..|.||||+|+..++.+ ++++|+++|++++.+|..|+|||++|+.
T Consensus 127 t~L~~A~~~~-~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 200 (223)
T 2f8y_A 127 SALHWAAAVN-NVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYE----TAKVLLDHFANRDITDHMDRLPRDIAQE 200 (223)
T ss_dssp BHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred cHHHHHHHcC-CHHHHHHHHH-cCCCCCCcCCCCcCHHHHHHHcCCHH----HHHHHHHcCCCCccccccCCCHHHHHHH
Confidence 9999999999 9999999999 89999999999999999999999988 9999999999999999999999999999
Q ss_pred hCCCCCCCCCCCChhhHHHHHHcCCCCcc
Q 048228 383 GQGIGVSPGSSFRVPDAEIFLYTGIENAS 411 (629)
Q Consensus 383 ~~~~~~~~~~~~~~~~v~~LL~~Gad~~~ 411 (629)
.+ +.+++++|+++|+....
T Consensus 201 ~~----------~~~i~~~L~~~g~~~~~ 219 (223)
T 2f8y_A 201 RM----------HHDIVRLLDEYNLVRSP 219 (223)
T ss_dssp TT----------CHHHHHHHHHTTCSSCC
T ss_pred hc----------chHHHHHHHHcCCCccc
Confidence 87 69999999999997653
No 37
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=5.6e-36 Score=292.89 Aligned_cols=214 Identities=18% Similarity=0.199 Sum_probs=173.7
Q ss_pred CCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhccchhHHhhhccchH
Q 048228 112 GDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRA 191 (629)
Q Consensus 112 g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~ 191 (629)
|+.++|++|+++|++.....|..|.||||+| +..|+.+++++|+++|++++..+ ..|+||
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A-~~~g~~~~v~~Ll~~g~~~~~~~-------------------~~g~t~ 61 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLA-ARYSRSDAAKRLLEASADANIQD-------------------NMGRTP 61 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHH-HHTTCHHHHHHHHHTTCCTTCCC-------------------TTSCCH
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHH-HHcCCHHHHHHHHHcCCCCCCcC-------------------CCCCCH
Confidence 5667777777777776555677777777777 66677777777777777766442 336677
Q ss_pred HHHHHhcCCHHHHHHHHhCCC-CcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCCCchHHHHHhcCCCCC
Q 048228 192 VHAVARGGNLDILRQLLGDCE-NVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFLHMVVAGFRSPG 268 (629)
Q Consensus 192 Lh~A~~~g~~~iv~~Ll~~ga-d~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~TpLh~A~~~~~~~~ 268 (629)
||+|+..|+.+++++|+++++ +++ ..+..|.||||+|+..++.++ +|++.|++++..|..|.||||+|+.
T Consensus 62 L~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~------ 134 (223)
T 2f8y_A 62 LHAAVSADAQGVFQILIRNRATDLD-ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAA------ 134 (223)
T ss_dssp HHHHHHTTCHHHHHHHHHBTTSCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHH------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHH------
Confidence 888877778888888877776 555 377777788888887777777 6666778888888889999999998
Q ss_pred ccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCC
Q 048228 269 FRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPR 348 (629)
Q Consensus 269 ~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~ 348 (629)
.++.+++++|++.| ++++.+|..|.||||+|+..+ +.+++++|++ +|++++.+|..|.||||+|+..++
T Consensus 135 ----~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~ 203 (223)
T 2f8y_A 135 ----VNNVDAAVVLLKNG-----ANKDMQNNREETPLFLAAREG-SYETAKVLLD-HFANRDITDHMDRLPRDIAQERMH 203 (223)
T ss_dssp ----TTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHHHHHT-CHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred ----cCCHHHHHHHHHcC-----CCCCCcCCCCcCHHHHHHHcC-CHHHHHHHHH-cCCCCccccccCCCHHHHHHHhcc
Confidence 58999999999998 669999999999999999999 9999999999 999999999999999999999999
Q ss_pred CchHHHHHHHHHHcCCCCC
Q 048228 349 SASSEILIKQLISAGGISN 367 (629)
Q Consensus 349 ~~~~~~lv~~Ll~~Gadvn 367 (629)
.+ ++++|+++|+...
T Consensus 204 ~~----i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 204 HD----IVRLLDEYNLVRS 218 (223)
T ss_dssp HH----HHHHHHHTTCSSC
T ss_pred hH----HHHHHHHcCCCcc
Confidence 88 9999999998754
No 38
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=9.2e-38 Score=324.84 Aligned_cols=261 Identities=14% Similarity=0.053 Sum_probs=201.0
Q ss_pred cCcHHHHHHHhhcccccCCCcccccCCCChHHHHHHHcCCHHHHHHHHhcCCCcccc-------------CCCCCC---C
Q 048228 74 CRSSVARKLLHDCETKKGHNSLIRAGYGGWLLYTAASAGDVRFVKELLQRDPLLVFG-------------EGEYGV---T 137 (629)
Q Consensus 74 ~~~~~i~~lL~~~~~~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~-------------~d~~g~---t 137 (629)
....+++++|++ .|++++..+..|.|+++ |+.++|++||++|++.... ....+. +
T Consensus 29 ~~~~dlv~~ll~----~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 99 (327)
T 1sw6_A 29 TFTHDLTSDFLS----SPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQ 99 (327)
T ss_dssp ECCTTCCCSTTT----SSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC---------------------------
T ss_pred hhcCchHHHHhh----CCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccc
Confidence 344566888888 99999999999999987 9999999999998663110 000111 1
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccc
Q 048228 138 DILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAY 217 (629)
Q Consensus 138 pL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~ 217 (629)
.+|.| +..+..+++++|++.|++++.. ++..|+||||+|+..|+.++|++||++|++++.
T Consensus 100 ~~~~a-~~~~~~~~~~~l~~~g~dvn~~------------------~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~- 159 (327)
T 1sw6_A 100 QQHVS-FDSLLQEVNDAFPNTQLNLNIP------------------VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY- 159 (327)
T ss_dssp ----C-HHHHHHHHHHHCTTSCCCSCSC------------------CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTB-
T ss_pred hhHHH-HHhhHHHHHHHHHhcCCCcccc------------------cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-
Confidence 22444 6667789999999999999862 234588999999999999999999999999995
Q ss_pred cCCCCCcHHHHHHhcCC---cce---ecccCCCCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCC----
Q 048228 218 RDVQGSTILHSASGRGQ---VEV---LIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKI---- 287 (629)
Q Consensus 218 ~d~~g~TpLh~A~~~g~---~~i---lL~~~gadin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~---- 287 (629)
+|..|+||||+|+..|+ .++ ++....++++.+|..|+||||+|+..... .++.+++++|++.+.
T Consensus 160 ~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~------~g~~~~v~~Ll~~~~~~~~ 233 (327)
T 1sw6_A 160 GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGM------TGCSAAAKYYLDILMGWIV 233 (327)
T ss_dssp CCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTS------TTCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccc------cccHHHHHHHHHHHHHHHh
Confidence 99999999999999988 555 44444588999999999999999972110 279999999998620
Q ss_pred -----------CcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHH
Q 048228 288 -----------VEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILI 356 (629)
Q Consensus 288 -----------~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv 356 (629)
...+++++.++..|.||||+|+. +++|++ . ++|.+|..|+||||+|+..|+.+ ++
T Consensus 234 ~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~-------~~~Ll~-~--~~n~~d~~G~TpLh~A~~~g~~~----~v 299 (327)
T 1sw6_A 234 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLD-------LKWIIA-N--MLNAQDSNGDTCLNIAARLGNIS----IV 299 (327)
T ss_dssp HGGGCCEEEC----------------CHHHHHCS-------HHHHHH-H--TTTCCCTTSCCHHHHHHHHCCHH----HH
T ss_pred cccchHHHhhhhcccCCcccccccCCChhHHHHH-------HHHHHH-h--CCCCCCCCCCCHHHHHHHcCCHH----HH
Confidence 00026799999999999999984 899999 5 79999999999999999999988 99
Q ss_pred HHHHHcCCCCCCCCCCCccHHHHHHHh
Q 048228 357 KQLISAGGISNCQDNVARNAIACHLKG 383 (629)
Q Consensus 357 ~~Ll~~Gadvn~~d~~G~TpL~~A~~~ 383 (629)
++|+++|+|++.+|..|+||||+|++.
T Consensus 300 ~~Ll~~Gad~~~~d~~G~TpL~~A~~~ 326 (327)
T 1sw6_A 300 DALLDYGADPFIANKSGLRPVDFGAGL 326 (327)
T ss_dssp HHHHHTTCCTTCCCTTSCCGGGGTCC-
T ss_pred HHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence 999999999999999999999999754
No 39
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=6e-36 Score=306.33 Aligned_cols=240 Identities=16% Similarity=0.157 Sum_probs=210.5
Q ss_pred HHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCC
Q 048228 143 AARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQG 222 (629)
Q Consensus 143 A~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g 222 (629)
++..+..+.++.++....++........ ....+..|.||||.||..|+.++|++|+++|++++. .|..|
T Consensus 5 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g 73 (299)
T 1s70_B 5 DAKQKRNEQLKRWIGSETDLEPPVVKRK----------KTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINY-ANVDG 73 (299)
T ss_dssp HHHHHHHHHHHHHHHTTTSSCCSCCCCS----------CCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTC-BCTTC
T ss_pred HHHHHHHHHHHHHHccccccccccccCc----------ccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCC
Confidence 3566777888888877765543322110 011234567999999999999999999999999995 99999
Q ss_pred CcHHHHHHhcCCcce--ecccCCCCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcC
Q 048228 223 STILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNN 300 (629)
Q Consensus 223 ~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~ 300 (629)
.||||+|+..|+.++ +|++.|++++..|..|.||||+|+. .++.+++++|+++| ++++..+..
T Consensus 74 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~----------~g~~~~v~~Ll~~g-----~~~~~~~~~ 138 (299)
T 1s70_B 74 LTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS----------CGYLDIAEYLISQG-----AHVGAVNSE 138 (299)
T ss_dssp CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----------HTCHHHHHHHHHTT-----CCTTCCCTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH----------cCCHHHHHHHHhCC-----CCCCCcCCC
Confidence 999999999999999 8888999999999999999999999 59999999999999 669999999
Q ss_pred CchHHHHHHHcCCcHHHHHHHhcCCCCCccc--------------------------CCCCCCcHHHHHHhCCCCchHHH
Q 048228 301 GRTALHLAVSENIQCNLVELLMTVPSINLNI--------------------------QDGEGMTPLDLLKQHPRSASSEI 354 (629)
Q Consensus 301 g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~--------------------------~d~~G~TpLh~A~~~~~~~~~~~ 354 (629)
|.||||+|+..+ +.++++.|+...|++++. .+..|.||||+|+..|+.+
T Consensus 139 g~t~l~~A~~~~-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~---- 213 (299)
T 1s70_B 139 GDTPLDIAEEEA-MEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTE---- 213 (299)
T ss_dssp SCCHHHHCCSHH-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHH----
T ss_pred CCCHHHHHHhcc-hHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHH----
Confidence 999999999999 999999888756776654 5678999999999999988
Q ss_pred HHHHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcCCCCccccccCCChhhhh
Q 048228 355 LIKQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTGIENASDAICDAASVEYS 423 (629)
Q Consensus 355 lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~d~~g~t~~~~a 423 (629)
++++|+++|+++|.+|..|+||||+|+..+ +.+++++|+++|+|++..|..|+||+++|
T Consensus 214 ~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~----------~~~~v~~Ll~~gad~~~~d~~g~t~l~~A 272 (299)
T 1s70_B 214 VLKLLIQARYDVNIKDYDGWTPLHAAAHWG----------KEEACRILVENLCDMEAVNKVGQTAFDVA 272 (299)
T ss_dssp HHHHHHTTTCCTTCCCTTCCCHHHHHHHTT----------CHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred HHHHHHHcCCCCCCcCCCCCcHHHHHHhcC----------CHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 999999999999999999999999999987 69999999999999999999999999977
No 40
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=6.8e-37 Score=318.31 Aligned_cols=266 Identities=13% Similarity=0.071 Sum_probs=203.1
Q ss_pred cCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhccch-hHHhhhccc
Q 048228 111 AGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSY-SVFKWEMMN 189 (629)
Q Consensus 111 ~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~-~~~~d~~g~ 189 (629)
....++|++|+++|++ ++..+..|.|+++ |+.++|++||++|++++...-... ....... ...+.....
T Consensus 29 ~~~~dlv~~ll~~ga~-i~~~~~~g~~~~~------g~~~~v~~Ll~~g~~~~~~~~~~a---~~~~~~~~~~~~~~~~~ 98 (327)
T 1sw6_A 29 TFTHDLTSDFLSSPLK-IMKALPSPVVNDN------EQKMKLEAFLQRLLFPEIQEMPTS---LNNDSSNRNSEGGSSNQ 98 (327)
T ss_dssp ECCTTCCCSTTTSSCC-CEECBCCCCCCCH------HHHHHHHHHHHHHHC-----------------------------
T ss_pred hhcCchHHHHhhCCcc-cccCCCCCCcccC------chhHHHHHHHHhccCCccccchHh---hhcccccccccccCCcc
Confidence 4666889999999998 5778899999855 899999999999998764211000 0000000 000111122
Q ss_pred hHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCCCchHHHHHhcCCCC
Q 048228 190 RAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFLHMVVAGFRSP 267 (629)
Q Consensus 190 t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~TpLh~A~~~~~~~ 267 (629)
+.+|+|+..+..+++++|++.|++++..+|..|+||||+|+..|+.++ +|++.|++++.+|..|+||||+|+.
T Consensus 99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~----- 173 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVK----- 173 (327)
T ss_dssp -----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHH-----
T ss_pred chhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH-----
Confidence 456889999999999999999999995479999999999999999999 8888999999999999999999999
Q ss_pred CccccccH---HHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHH----cCCcHHHHHHHhcCC---------------
Q 048228 268 GFRRVDHQ---IQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVS----ENIQCNLVELLMTVP--------------- 325 (629)
Q Consensus 268 ~~~~~~~~---~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~----~~~~~~iv~~Ll~~~--------------- 325 (629)
.++ .++++.|++.+. ++++.+|..|+||||+|+. .+ +.+++++|++ .
T Consensus 174 -----~g~~~~~~~~~~ll~~~~----~~~~~~d~~g~tpLh~A~~~~~~~g-~~~~v~~Ll~-~~~~~~~~~~~~~i~~ 242 (327)
T 1sw6_A 174 -----SVNNYDSGTFEALLDYLY----PCLILEDSMNRTILHHIIITSGMTG-CSAAAKYYLD-ILMGWIVKKQNRPIQS 242 (327)
T ss_dssp -----SSHHHHTTCHHHHHHHHG----GGGGEECTTCCCHHHHHHHHHTSTT-CHHHHHHHHH-HHHHHHHHGGGCCEEE
T ss_pred -----hcccccHHHHHHHHHhhh----ccccCCCCCCCCHHHHHHHHccccc-cHHHHHHHHH-HHHHHHhcccchHHHh
Confidence 477 677777777652 3589999999999999998 78 9999999998 5
Q ss_pred -----CCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHH
Q 048228 326 -----SINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAE 400 (629)
Q Consensus 326 -----gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~ 400 (629)
|+++|.+|..|.||||+|+. +++|+++ ++|.+|..|+||||+|+..+ +.++|+
T Consensus 243 ~~~~~g~~~~~~~~~g~t~L~~a~~----------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g----------~~~~v~ 300 (327)
T 1sw6_A 243 GTNEKESKPNDKNGERKDSILENLD----------LKWIIAN--MLNAQDSNGDTCLNIAARLG----------NISIVD 300 (327)
T ss_dssp C----------------CHHHHHCS----------HHHHHHH--TTTCCCTTSCCHHHHHHHHC----------CHHHHH
T ss_pred hhhcccCCcccccccCCChhHHHHH----------HHHHHHh--CCCCCCCCCCCHHHHHHHcC----------CHHHHH
Confidence 99999999999999999985 7778887 69999999999999999987 699999
Q ss_pred HHHHcCCCCccccccCCChhhhhh
Q 048228 401 IFLYTGIENASDAICDAASVEYSS 424 (629)
Q Consensus 401 ~LL~~Gad~~~~d~~g~t~~~~a~ 424 (629)
+||++|||++..|..|+||+++|.
T Consensus 301 ~Ll~~Gad~~~~d~~G~TpL~~A~ 324 (327)
T 1sw6_A 301 ALLDYGADPFIANKSGLRPVDFGA 324 (327)
T ss_dssp HHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred HHHHcCCCCcccCCCCCCHHHHHH
Confidence 999999999999999999999874
No 41
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.7e-34 Score=284.37 Aligned_cols=198 Identities=19% Similarity=0.229 Sum_probs=180.9
Q ss_pred ccchHHHHHHhcCCHHHHHHHHhC-CCCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCc-----cccCCCCCchHH
Q 048228 187 MMNRAVHAVARGGNLDILRQLLGD-CENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLI-----SVTNSHGDTFLH 258 (629)
Q Consensus 187 ~g~t~Lh~A~~~g~~~iv~~Ll~~-gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadi-----n~~d~~g~TpLh 258 (629)
.|+||||+|+..|+.++|++|++. |++++. .|..|.||||+|+..|+.++ +|++.|+++ +..|..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQ-RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCccc-CCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 378999999999999999999998 999995 99999999999999999999 777778877 677889999999
Q ss_pred HHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCc-------------CCchHHHHHHHcCCcHHHHHHHhcCC
Q 048228 259 MVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNN-------------NGRTALHLAVSENIQCNLVELLMTVP 325 (629)
Q Consensus 259 ~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~-------------~g~TpLh~A~~~~~~~~iv~~Ll~~~ 325 (629)
+|+. .++.+++++|++.| ++++..+. .|.||||+|+..+ +.+++++|++ +
T Consensus 81 ~A~~----------~~~~~~v~~Ll~~g-----~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~ 143 (232)
T 2rfa_A 81 IAVI----------NQNVNLVRALLARG-----ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVG-SEEIVRLLIE-H 143 (232)
T ss_dssp HHHH----------TTCHHHHHHHHHTT-----CCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHT-CHHHHHHHHH-T
T ss_pred HHHH----------cCCHHHHHHHHhCC-----CCCCcccCCcceeecccccccCCCCHHHHHHHcC-CHHHHHHHHH-C
Confidence 9999 59999999999999 55777765 7999999999999 9999999999 9
Q ss_pred CCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCC------CCCCCCCccHHHHHHHhCCCCCCCCCCCChhhH
Q 048228 326 SINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGIS------NCQDNVARNAIACHLKGQGIGVSPGSSFRVPDA 399 (629)
Q Consensus 326 gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadv------n~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v 399 (629)
|+|+|.+|..|+||||+|+..++.+.+..++++|+++|+++ +.+|..|+||||+|+..+ +.+++
T Consensus 144 ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g----------~~~~v 213 (232)
T 2rfa_A 144 GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG----------NIVMF 213 (232)
T ss_dssp TCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHT----------CHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcC----------CHHHH
Confidence 99999999999999999999999997777889999999998 689999999999999987 69999
Q ss_pred HHHHHcCCCCccc
Q 048228 400 EIFLYTGIENASD 412 (629)
Q Consensus 400 ~~LL~~Gad~~~~ 412 (629)
++|+++|++....
T Consensus 214 ~~Ll~~g~~~~~~ 226 (232)
T 2rfa_A 214 QHLMQKRKHIAAA 226 (232)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHhcCccchhh
Confidence 9999999887644
No 42
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=2.1e-35 Score=291.79 Aligned_cols=213 Identities=20% Similarity=0.166 Sum_probs=189.2
Q ss_pred hhhccchHHHHHHhcCCHHHHHHHHhCCC----CcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCCCchH
Q 048228 184 KWEMMNRAVHAVARGGNLDILRQLLGDCE----NVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFL 257 (629)
Q Consensus 184 ~d~~g~t~Lh~A~~~g~~~iv~~Ll~~ga----d~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~TpL 257 (629)
.|..|+||||+|+..|+.+++++|++.+. +++. .+..|.||||+|+..|+.++ +|++.|++++.+|..|.|||
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 82 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNF-QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCC-CCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 56779999999999999999999999876 6774 89999999999999999999 88889999999999999999
Q ss_pred HHHHhcCCCCCccccccHHHHHHHHHcCCCCc--chhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCC-
Q 048228 258 HMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVE--VKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDG- 334 (629)
Q Consensus 258 h~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d--~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~- 334 (629)
|+|+. .++.+++++|++.+ .+ ....++..+..|.||||+|+..+ +.+++++|++ .|++++.++.
T Consensus 83 ~~A~~----------~~~~~~v~~Ll~~~-~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~g~~~~~~~~~ 149 (236)
T 1ikn_D 83 HLACE----------QGCLASVGVLTQSC-TTPHLHSILKATNYNGHTCLHLASIHG-YLGIVELLVS-LGADVNAQEPC 149 (236)
T ss_dssp HHHHH----------HTCHHHHHHHHHST-TTTSSSCGGGCCCTTCCCHHHHHHHTT-CHHHHHHHHH-HTCCTTCCCTT
T ss_pred HHHHH----------cCCHHHHHHHHhcc-cchhHHHHhhccCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCCCCCCCC
Confidence 99999 59999999999988 21 11336888999999999999999 9999999999 9999999998
Q ss_pred CCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcCCCCc--cc
Q 048228 335 EGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTGIENA--SD 412 (629)
Q Consensus 335 ~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad~~--~~ 412 (629)
.|.||||+|+..++.+ ++++|+++|++++.+|..|+|||++|+..+ +.+++++|+++|+++. ..
T Consensus 150 ~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~----------~~~~~~~Ll~~ga~~~~~~~ 215 (236)
T 1ikn_D 150 NGRTALHLAVDLQNPD----LVSLLLKCGADVNRVTYQGYSPYQLTWGRP----------STRIQQQLGQLTLENLQMLP 215 (236)
T ss_dssp TCCCHHHHHHHTTCHH----HHHHHHTTTCCSCCCCTTCCCGGGGCTTSS----------CHHHHHHHHTTSCGGGSSCC
T ss_pred CCCCHHHHHHHcCCHH----HHHHHHHcCCCCCcccCCCCCHHHHHHccC----------chHHHHHHHHcchhhhhcCC
Confidence 9999999999999988 999999999999999999999999999876 6999999999999877 66
Q ss_pred cccCCChhhhhh
Q 048228 413 AICDAASVEYSS 424 (629)
Q Consensus 413 d~~g~t~~~~a~ 424 (629)
+..|.++.+...
T Consensus 216 ~~~~~~~~~~~~ 227 (236)
T 1ikn_D 216 ESEDEESYDTES 227 (236)
T ss_dssp CCCTTTCCCCC-
T ss_pred ccchHHHHhhhc
Confidence 777888877553
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=6.1e-35 Score=288.52 Aligned_cols=218 Identities=22% Similarity=0.230 Sum_probs=186.2
Q ss_pred cccCCCChHHHHHHHcCCHHHHHHHHhcCCC---ccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCch
Q 048228 96 IRAGYGGWLLYTAASAGDVRFVKELLQRDPL---LVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEF 172 (629)
Q Consensus 96 ~~d~~g~tpLh~A~~~g~~~~v~~LL~~g~~---~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~ 172 (629)
.+|.+|.||||+|+..|+.++|++|++.+.. .++..|..|.||||+| +..|+.+++++|+++|++++..+
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~~g~~~~~~~------ 75 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA-VITNQPEIAEALLGAGCDPELRD------ 75 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHH-HHTTCHHHHHCCCSCCCCSCCCC------
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHH-HHcCCHHHHHHHHHcCCCCCCcC------
Confidence 4678899999999999999999999998763 3678899999999998 77899999999999999888653
Q ss_pred hhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcceecccCCCCccccCCC
Q 048228 173 EEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVLIAKSPSLISVTNSH 252 (629)
Q Consensus 173 ~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~ilL~~~gadin~~d~~ 252 (629)
..|+||||+|+..|+.+++++|+++|++... ...++..+..
T Consensus 76 -------------~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--------------------------~~~~~~~~~~ 116 (236)
T 1ikn_D 76 -------------FRGNTPLHLACEQGCLASVGVLTQSCTTPHL--------------------------HSILKATNYN 116 (236)
T ss_dssp -------------TTCCCHHHHHHHHTCHHHHHHHHHSTTTTSS--------------------------SCGGGCCCTT
T ss_pred -------------CCCCCHHHHHHHcCCHHHHHHHHhcccchhH--------------------------HHHhhccCCC
Confidence 4478999999999999999999999887531 1335677888
Q ss_pred CCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCc-CCchHHHHHHHcCCcHHHHHHHhcCCCCCccc
Q 048228 253 GDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNN-NGRTALHLAVSENIQCNLVELLMTVPSINLNI 331 (629)
Q Consensus 253 g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~-~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~ 331 (629)
|.||||+|+. .++.+++++|++.| ++++.++. .|+||||+|+..+ +.++|++|++ +|++++.
T Consensus 117 g~t~L~~A~~----------~~~~~~v~~Ll~~g-----~~~~~~~~~~g~tpL~~A~~~~-~~~~v~~Ll~-~ga~~~~ 179 (236)
T 1ikn_D 117 GHTCLHLASI----------HGYLGIVELLVSLG-----ADVNAQEPCNGRTALHLAVDLQ-NPDLVSLLLK-CGADVNR 179 (236)
T ss_dssp CCCHHHHHHH----------TTCHHHHHHHHHHT-----CCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHHT-TTCCSCC
T ss_pred CCCHHHHHHH----------cCCHHHHHHHHHcC-----CCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCCCc
Confidence 9999999999 58999999999999 66999998 9999999999999 9999999999 9999999
Q ss_pred CCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCC--CCCCCCccHHHHH
Q 048228 332 QDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISN--CQDNVARNAIACH 380 (629)
Q Consensus 332 ~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn--~~d~~G~TpL~~A 380 (629)
+|..|+||||+|+..++.+ ++++|+++|++.. ..+..|.||...+
T Consensus 180 ~~~~g~tpl~~A~~~~~~~----~~~~Ll~~ga~~~~~~~~~~~~~~~~~~ 226 (236)
T 1ikn_D 180 VTYQGYSPYQLTWGRPSTR----IQQQLGQLTLENLQMLPESEDEESYDTE 226 (236)
T ss_dssp CCTTCCCGGGGCTTSSCHH----HHHHHHTTSCGGGSSCCCCCTTTCCCCC
T ss_pred ccCCCCCHHHHHHccCchH----HHHHHHHcchhhhhcCCccchHHHHhhh
Confidence 9999999999999999988 9999999999876 7888888886433
No 44
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.9e-33 Score=276.78 Aligned_cols=216 Identities=19% Similarity=0.178 Sum_probs=182.1
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhc-CCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhcc
Q 048228 100 YGGWLLYTAASAGDVRFVKELLQR-DPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSD 178 (629)
Q Consensus 100 ~g~tpLh~A~~~g~~~~v~~LL~~-g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~ 178 (629)
.|.||||+||..|+.++|++|++. +++ ++..|..|.||||+| +..|+.+++++|+++|+++.....
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~-~~~~~~~g~t~L~~A-~~~g~~~~v~~Ll~~~~~~~~~~~----------- 68 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCE-VHQRGAMGETALHIA-ALYDNLEAAMVLMEAAPELVFEPM----------- 68 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSC-TTCCCTTSCCHHHHH-HHTTCHHHHHHHHHHCGGGGGCCC-----------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCC-cccCCCCCCCHHHHH-HHcCCHHHHHHHHHcCchhccccc-----------
Confidence 488999999999999999999998 655 688899999999998 778999999999999987643211
Q ss_pred chhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcceecccCCCCccccCCCCCchHH
Q 048228 179 SYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVLIAKSPSLISVTNSHGDTFLH 258 (629)
Q Consensus 179 ~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~ilL~~~gadin~~d~~g~TpLh 258 (629)
..++..|.||||+|+..|+.+++++|+++|++++. .+... .+ ....+..|..|.||||
T Consensus 69 ---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~--~~----------------~~~~~~~~~~g~t~L~ 126 (232)
T 2rfa_A 69 ---TSELYEGQTALHIAVINQNVNLVRALLARGASVSA-RATGS--VF----------------HYRPHNLIYYGEHPLS 126 (232)
T ss_dssp ---CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCCSG--GG----------------SCCTTCSCCCCSSHHH
T ss_pred ---cccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCc-ccCCc--ce----------------eecccccccCCCCHHH
Confidence 12355689999999999999999999999999975 44321 11 1245667889999999
Q ss_pred HHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHH----HHHhcCCCCCc-----
Q 048228 259 MVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLV----ELLMTVPSINL----- 329 (629)
Q Consensus 259 ~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv----~~Ll~~~gadv----- 329 (629)
+|+. .++.+++++|+++| +++|.+|..|+||||+|+..+ +.+++ ++|++ .|+++
T Consensus 127 ~A~~----------~~~~~~v~~Ll~~g-----a~~~~~d~~g~t~L~~A~~~~-~~~~~~~i~~~Ll~-~g~~~~~~~~ 189 (232)
T 2rfa_A 127 FAAC----------VGSEEIVRLLIEHG-----ADIRAQDSLGNTVLHILILQP-NKTFACQMYNLLLS-YDGGDHLKSL 189 (232)
T ss_dssp HHHH----------HTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHTCS-CHHHHHHHHHHHHH-TTCSCSSCCG
T ss_pred HHHH----------cCCHHHHHHHHHCC-----CCCCCCCCCCCCHHHHHHHcC-ChHHHHHHHHHHHh-cCCchhhhhh
Confidence 9999 59999999999999 679999999999999999999 99888 99999 99998
Q ss_pred -ccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCC
Q 048228 330 -NIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDN 371 (629)
Q Consensus 330 -n~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~ 371 (629)
+.+|..|+||||+|+..|+.+ ++++|+++|++......
T Consensus 190 ~~~~~~~g~tpl~~A~~~g~~~----~v~~Ll~~g~~~~~~~~ 228 (232)
T 2rfa_A 190 ELVPNNQGLTPFKLAGVEGNIV----MFQHLMQKRKHIAAAHH 228 (232)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHH----HHHHHHHHHHHC-----
T ss_pred hccCCCCCCCHHHHHHHcCCHH----HHHHHHhcCccchhhhc
Confidence 689999999999999999988 99999999987765443
No 45
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=9.1e-34 Score=286.59 Aligned_cols=239 Identities=17% Similarity=0.197 Sum_probs=179.8
Q ss_pred CCCcccccCCCChHHHHHHHcCCHHHHHHHHhc----CCCccc---cCCCCCCCHHHHHHHHc---CCHHHHHHHHHcCC
Q 048228 91 GHNSLIRAGYGGWLLYTAASAGDVRFVKELLQR----DPLLVF---GEGEYGVTDILYAAARS---KNSEVFRLLLDNAV 160 (629)
Q Consensus 91 g~~~~~~d~~g~tpLh~A~~~g~~~~v~~LL~~----g~~~~~---~~d~~g~tpL~~AA~~~---g~~~iv~~Ll~~Ga 160 (629)
++..+..|.+|.||||+||..|+.++|+.||+. ++.... ..|..|.||||+| +.. |+.+++++|+++|+
T Consensus 3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A-~~~~~~g~~~~v~~Ll~~ga 81 (273)
T 2pnn_A 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA-MLNLHNGQNDTIALLLDVAR 81 (273)
T ss_dssp --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHH-HHSCBTTBCHHHHHHHHHHH
T ss_pred cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHH-HHHHhcCChHHHHHHHHhhc
Confidence 456667889999999999999999999999874 444221 4588999999999 544 99999999999998
Q ss_pred CCccccCCCCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcceecc
Q 048228 161 APRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVLIA 240 (629)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~ilL~ 240 (629)
+++... .+.+......+..|+||||+|+..|+.++|++|+++|++++. .+..+. +
T Consensus 82 ~~~~~~--------~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~---------------~- 136 (273)
T 2pnn_A 82 KTDSLK--------QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA-AANGDF---------------F- 136 (273)
T ss_dssp HTTCHH--------HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBCSGG---------------G-
T ss_pred cccchh--------HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc-cccccc---------------c-
Confidence 654210 000011112356789999999999999999999999999985 665441 0
Q ss_pred cCCCCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHc---CCCCcchhhhccCCcCCchHHHHHHHcCCc---
Q 048228 241 KSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVS---GKIVEVKDIINVTNNNGRTALHLAVSENIQ--- 314 (629)
Q Consensus 241 ~~gadin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~---~g~~d~~a~in~~d~~g~TpLh~A~~~~~~--- 314 (629)
...+.+..+..|.||||+|+. .++.+++++|++ .| +++|.+|..|+||||+|+..+ +
T Consensus 137 -~~~~~~~~~~~g~tpL~~A~~----------~g~~~~v~~Ll~~~~~g-----ad~~~~d~~g~tpLh~A~~~~-~~~~ 199 (273)
T 2pnn_A 137 -KKTKGRPGFYFGELPLSLAAC----------TNQLAIVKFLLQNSWQP-----ADISARDSVGNTVLHALVEVA-DNTV 199 (273)
T ss_dssp -SSCSSSCCCCSCBSHHHHHHH----------TTCHHHHHHHHHCSSCC-----CCTTCCCTTSCCHHHHHHHHC-CSCH
T ss_pred -ccccccccccCCCCHHHHHHH----------cCCHHHHHHHHhcccCC-----CCceeeCCCCCcHHHHHHHcc-Ccch
Confidence 112455667889999999999 599999999999 88 669999999999999999988 6
Q ss_pred ------HHHHHHHhcCCCCCcc-------cCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCC-CCCCCCCCCccHH
Q 048228 315 ------CNLVELLMTVPSINLN-------IQDGEGMTPLDLLKQHPRSASSEILIKQLISAGG-ISNCQDNVARNAI 377 (629)
Q Consensus 315 ------~~iv~~Ll~~~gadvn-------~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Ga-dvn~~d~~G~TpL 377 (629)
.+++++|++ .|+++| .+|..|+||||+|+..|+.+ ++++|+++|| |+......+.+|-
T Consensus 200 ~~~~~~~~~v~~Ll~-~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~----iv~~Ll~~ga~dp~~~~~~~~~~~ 271 (273)
T 2pnn_A 200 DNTKFVTSMYNEILI-LGAKLHPTLKLEEITNRKGLTPLALAASSGKIG----VLAYILQREIHEPECRHAAAHHHH 271 (273)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHH----HHHHHHHHHTC-------------
T ss_pred hHHHHHHHHHHHHHH-hhhhcccccccccccCCCCCCHHHHHHHhChHH----HHHHHHHCCCCCchhhhhhhhhcc
Confidence 899999999 999997 48999999999999999988 9999999999 8888777777663
No 46
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.2e-32 Score=264.60 Aligned_cols=193 Identities=19% Similarity=0.200 Sum_probs=177.0
Q ss_pred ccchHHHHHHhcCCHHHHHHHHhCCC-CcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCCCchHHHHHhc
Q 048228 187 MMNRAVHAVARGGNLDILRQLLGDCE-NVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFLHMVVAG 263 (629)
Q Consensus 187 ~g~t~Lh~A~~~g~~~iv~~Ll~~ga-d~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~TpLh~A~~~ 263 (629)
.+.||||.|+..|+.++|+.|++.+. +++. .|..|.||||+|+..|+.++ +|++.|++++..|..|.||||+|+.
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~- 81 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDE-VDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGA- 81 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH-
Confidence 36799999999999999999999887 8885 89999999999999999999 8888999999999999999999999
Q ss_pred CCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCC-CCcccCCCCCCcHHHH
Q 048228 264 FRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPS-INLNIQDGEGMTPLDL 342 (629)
Q Consensus 264 ~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~g-advn~~d~~G~TpLh~ 342 (629)
.++.+++++|++.+. ++++..|..|.||||+|+..+ +.+++++|++ .| ++++.+|..|.||||+
T Consensus 82 ---------~~~~~~~~~Ll~~~~----~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~g~~~~~~~~~~g~t~L~~ 146 (201)
T 3hra_A 82 ---------QGRTEILAYMLKHAT----PDLNKHNRYGGNALIPAAEKG-HIDNVKLLLE-DGREDIDFQNDFGYTALIE 146 (201)
T ss_dssp ---------TTCHHHHHHHHHHSC----CCTTCCCTTSCCSHHHHHHTT-CHHHHHHHHH-HCCCCTTCCCTTSCCHHHH
T ss_pred ---------cCCHHHHHHHHhccC----cccccccCCCCcHHHHHHHcC-CHHHHHHHHH-cCCCCcCCCCCCCCCHHHH
Confidence 599999999995442 459999999999999999999 9999999999 78 9999999999999999
Q ss_pred HHhCCCC-chHHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcC
Q 048228 343 LKQHPRS-ASSEILIKQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTG 406 (629)
Q Consensus 343 A~~~~~~-~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~G 406 (629)
|+..++. .....++++|+++|++++.+|..|+||||+|+..+ +.+++++|+++|
T Consensus 147 A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~----------~~~~~~~Ll~~G 201 (201)
T 3hra_A 147 AVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKG----------YTEISKILAQYN 201 (201)
T ss_dssp HHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT----------CHHHHHHHHTCC
T ss_pred HHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC----------CHhHHHHHHhcC
Confidence 9999872 11234999999999999999999999999999987 699999999987
No 47
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=2.2e-33 Score=280.91 Aligned_cols=218 Identities=17% Similarity=0.188 Sum_probs=181.7
Q ss_pred CCChHHHHHHHcCCHH----HHHHHHhcCCCcccc----CCCCCCCHHHHHHHHc---CCHHHHHHHHHcCCCCccccCC
Q 048228 100 YGGWLLYTAASAGDVR----FVKELLQRDPLLVFG----EGEYGVTDILYAAARS---KNSEVFRLLLDNAVAPRCCLSS 168 (629)
Q Consensus 100 ~g~tpLh~A~~~g~~~----~v~~LL~~g~~~~~~----~d~~g~tpL~~AA~~~---g~~~iv~~Ll~~Ga~~~~~~~~ 168 (629)
+|+||||+||..|+.+ ++++|+++++++ +. .|..|.||||+| +.. |+.+++++|+++|++++.....
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i-~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 78 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYL-TDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDKDSGNPKPL 78 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCCcccchhhh
Confidence 4889999999999997 667777788874 55 799999999998 777 9999999999999887643210
Q ss_pred CCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcceecccCCCCccc
Q 048228 169 GGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVLIAKSPSLISV 248 (629)
Q Consensus 169 ~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~ilL~~~gadin~ 248 (629)
.......+|..|.||||+|+..|+.++|++|+++|++++. .+..+.++ .+.+.
T Consensus 79 --------~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~~~------------------~~~~~ 131 (256)
T 2etb_A 79 --------VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL-RACGRFFQ------------------KHQGT 131 (256)
T ss_dssp --------GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCCSGGGS------------------CCSSS
T ss_pred --------cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cccccccc------------------ccccc
Confidence 0011112345689999999999999999999999999985 66655421 33455
Q ss_pred cCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHc---CCCCcchhhhccCCcCCchHHHHHHH--cCCcHH-------
Q 048228 249 TNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVS---GKIVEVKDIINVTNNNGRTALHLAVS--ENIQCN------- 316 (629)
Q Consensus 249 ~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~---~g~~d~~a~in~~d~~g~TpLh~A~~--~~~~~~------- 316 (629)
.|..|.||||+|+. .++.+++++|++ .| +++|.+|..|+||||+|+. .+ +.+
T Consensus 132 ~~~~g~tpL~~A~~----------~~~~~~v~~Ll~~~~~g-----a~~n~~d~~g~TpLh~A~~~~~~-~~~~~~~~~~ 195 (256)
T 2etb_A 132 CFYFGELPLSLAAC----------TKQWDVVTYLLENPHQP-----ASLEATDSLGNTVLHALVMIADN-SPENSALVIH 195 (256)
T ss_dssp CCCSCSSHHHHHHH----------TTCHHHHHHHHHCSSCC-----CCTTCCCTTSCCHHHHHHHHCCS-CHHHHHHHHH
T ss_pred cccCCCCHHHHHHH----------cCCHHHHHHHHhccccC-----CCcCccCCCCCCHHHHHHHcccC-CchhhHHHHH
Confidence 66779999999999 599999999999 88 6699999999999999998 66 888
Q ss_pred HHHHHhcCCCCCc-------ccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCC
Q 048228 317 LVELLMTVPSINL-------NIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISN 367 (629)
Q Consensus 317 iv~~Ll~~~gadv-------n~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn 367 (629)
++++|++ +|+++ +.+|..|+||||+|+..|+.+ ++++|+++|++..
T Consensus 196 iv~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~----~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 196 MYDGLLQ-MGARLCPTVQLEEISNHQGLTPLKLAAKEGKIE----IFRHILQREFSGA 248 (256)
T ss_dssp HHHHHHH-HHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHH----HHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCcccccccccccCCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCC
Confidence 9999999 99999 999999999999999999988 9999999987643
No 48
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.3e-32 Score=257.41 Aligned_cols=157 Identities=30% Similarity=0.476 Sum_probs=145.9
Q ss_pred hHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCCCchHHHHHhcCCCC
Q 048228 190 RAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFLHMVVAGFRSP 267 (629)
Q Consensus 190 t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~TpLh~A~~~~~~~ 267 (629)
++|+.||+.|+.++|++||++|+|++. +|..|+||||+|+..++.++ +|++.|++++.+|..|+||||+|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~-~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~----- 79 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNA-SDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAE----- 79 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-----
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHH-----
Confidence 679999999999999999999999995 99999999999999999999 7788999999999999999999999
Q ss_pred CccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCC
Q 048228 268 GFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHP 347 (629)
Q Consensus 268 ~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~ 347 (629)
.++.+++++|++.| +++|.+|.+|+||||+|+..| +.++|++|++ .|+|++.+|.+|+||||+|+..|
T Consensus 80 -----~g~~~~v~~Ll~~g-----advn~~d~~G~TpLh~A~~~g-~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~g 147 (169)
T 4gpm_A 80 -----NGHKEVVKLLISKG-----ADVNAKDSDGRTPLHHAAENG-HKEVVKLLIS-KGADVNTSDSDGRTPLDLAREHG 147 (169)
T ss_dssp -----TTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTT
T ss_pred -----cCCHHHHHHHHHCc-----CCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcC
Confidence 59999999999999 679999999999999999999 9999999999 99999999999999999999999
Q ss_pred CCchHHHHHHHHHHcCCCCCC
Q 048228 348 RSASSEILIKQLISAGGISNC 368 (629)
Q Consensus 348 ~~~~~~~lv~~Ll~~Gadvn~ 368 (629)
+.+ ++++|+++||+++.
T Consensus 148 ~~~----iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 148 NEE----VVKLLEKQGGWLEH 164 (169)
T ss_dssp CHH----HHHHHHTC------
T ss_pred CHH----HHHHHHHCCCCcCC
Confidence 988 99999999999874
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=2.3e-33 Score=283.66 Aligned_cols=212 Identities=18% Similarity=0.203 Sum_probs=171.6
Q ss_pred HhhhccchHHHHHHhcCCHHHHHHHHh----CCCCccc---ccCCCCCcHHHHHHhc---CCcce--ecccCCCC-----
Q 048228 183 FKWEMMNRAVHAVARGGNLDILRQLLG----DCENVLA---YRDVQGSTILHSASGR---GQVEV--LIAKSPSL----- 245 (629)
Q Consensus 183 ~~d~~g~t~Lh~A~~~g~~~iv~~Ll~----~gad~~~---~~d~~g~TpLh~A~~~---g~~~i--lL~~~gad----- 245 (629)
..+..|+||||+||..|+.++|+.|++ .+++++. ..+..|.||||+|+.. |+.++ +|++.|++
T Consensus 8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~ 87 (273)
T 2pnn_A 8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK 87 (273)
T ss_dssp ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence 356778999999999999999988887 5666642 3588999999999987 88888 66676665
Q ss_pred --ccc----cCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCc--------------CCchHH
Q 048228 246 --ISV----TNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNN--------------NGRTAL 305 (629)
Q Consensus 246 --in~----~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~--------------~g~TpL 305 (629)
++. .|..|+||||+|+. .++.+++++|++.| ++++.++. .|.|||
T Consensus 88 ~~i~~~~~~~d~~g~tpL~~A~~----------~g~~~~v~~Ll~~g-----a~~~~~~~~~~~~~~~~~~~~~~g~tpL 152 (273)
T 2pnn_A 88 QFVNASYTDSYYKGQTALHIAIE----------RRNMTLVTLLVENG-----ADVQAAANGDFFKKTKGRPGFYFGELPL 152 (273)
T ss_dssp HHHTCCCCSTTTTTCCHHHHHHH----------TTCHHHHHHHHHTT-----CCTTCCBCSGGGSSCSSSCCCCSCBSHH
T ss_pred HHhhcccccccCCCCCHHHHHHH----------cCCHHHHHHHHHCC-----CCcCccccccccccccccccccCCCCHH
Confidence 233 56799999999999 59999999999999 66999887 799999
Q ss_pred HHHHHcCCcHHHHHHHhcC--CCCCcccCCCCCCcHHHHHHhCCCCc-----hHHHHHHHHHHcCCCCC-------CCCC
Q 048228 306 HLAVSENIQCNLVELLMTV--PSINLNIQDGEGMTPLDLLKQHPRSA-----SSEILIKQLISAGGISN-------CQDN 371 (629)
Q Consensus 306 h~A~~~~~~~~iv~~Ll~~--~gadvn~~d~~G~TpLh~A~~~~~~~-----~~~~lv~~Ll~~Gadvn-------~~d~ 371 (629)
|+|+..+ +.++|++|++. .|+++|.+|..|+||||+|+..++.. ....++++|+++|+++| .+|.
T Consensus 153 ~~A~~~g-~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~ 231 (273)
T 2pnn_A 153 SLAACTN-QLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNR 231 (273)
T ss_dssp HHHHHTT-CHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCT
T ss_pred HHHHHcC-CHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCC
Confidence 9999999 99999999996 69999999999999999999988731 11348999999999997 4999
Q ss_pred CCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcCC-CCccccccCCChh
Q 048228 372 VARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTGI-ENASDAICDAASV 420 (629)
Q Consensus 372 ~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Ga-d~~~~d~~g~t~~ 420 (629)
.|+||||+|+..+ +.+++++|+++|| |+......+.++.
T Consensus 232 ~g~TpL~~A~~~g----------~~~iv~~Ll~~ga~dp~~~~~~~~~~~ 271 (273)
T 2pnn_A 232 KGLTPLALAASSG----------KIGVLAYILQREIHEPECRHAAAHHHH 271 (273)
T ss_dssp TSCCHHHHHHHTT----------CHHHHHHHHHHHTC-------------
T ss_pred CCCCHHHHHHHhC----------hHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence 9999999999987 6999999999999 8887776666543
No 50
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.98 E-value=6.1e-33 Score=277.67 Aligned_cols=198 Identities=17% Similarity=0.172 Sum_probs=175.7
Q ss_pred cchHHHHHHhcCCHH----HHHHHHhCCCCccc---ccCCCCCcHHHHHHhc---CCcce--ecccCCCCcccc------
Q 048228 188 MNRAVHAVARGGNLD----ILRQLLGDCENVLA---YRDVQGSTILHSASGR---GQVEV--LIAKSPSLISVT------ 249 (629)
Q Consensus 188 g~t~Lh~A~~~g~~~----iv~~Ll~~gad~~~---~~d~~g~TpLh~A~~~---g~~~i--lL~~~gadin~~------ 249 (629)
|+||||+||..|+.+ ++++|+++|++++. ..|..|.||||+|+.. |+.++ +|++.|++++..
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 789999999999997 66888889999984 3799999999999999 99999 777778877643
Q ss_pred -----CCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcC-------------CchHHHHHHHc
Q 048228 250 -----NSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNN-------------GRTALHLAVSE 311 (629)
Q Consensus 250 -----d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~-------------g~TpLh~A~~~ 311 (629)
|..|.||||+|+. .++.+++++|++.| ++++.++.. |+||||+|+..
T Consensus 82 ~~~~~d~~g~t~L~~A~~----------~g~~~~v~~Ll~~g-----a~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~ 146 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIE----------KRSLQCVKLLVENG-----ADVHLRACGRFFQKHQGTCFYFGELPLSLAACT 146 (256)
T ss_dssp CCCSTTTTTCCHHHHHHH----------TTCHHHHHHHHHTT-----CCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHT
T ss_pred ccccccccCCCHHHHHHH----------cCCHHHHHHHHHcC-----CCCCcccccccccccccccccCCCCHHHHHHHc
Confidence 4789999999999 59999999999999 669999886 99999999999
Q ss_pred CCcHHHHHHHhcC--CCCCcccCCCCCCcHHHHHHh--CCCCch---HHHHHHHHHHcCCCC-------CCCCCCCccHH
Q 048228 312 NIQCNLVELLMTV--PSINLNIQDGEGMTPLDLLKQ--HPRSAS---SEILIKQLISAGGIS-------NCQDNVARNAI 377 (629)
Q Consensus 312 ~~~~~iv~~Ll~~--~gadvn~~d~~G~TpLh~A~~--~~~~~~---~~~lv~~Ll~~Gadv-------n~~d~~G~TpL 377 (629)
+ +.++|++|++. .|+|+|.+|..|+||||+|+. .++.+. ...++++|+++|+++ +.+|..|+|||
T Consensus 147 ~-~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL 225 (256)
T 2etb_A 147 K-QWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPL 225 (256)
T ss_dssp T-CHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHH
T ss_pred C-CHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHH
Confidence 9 99999999996 799999999999999999999 555431 123899999999999 99999999999
Q ss_pred HHHHHhCCCCCCCCCCCChhhHHHHHHcCCCCcc
Q 048228 378 ACHLKGQGIGVSPGSSFRVPDAEIFLYTGIENAS 411 (629)
Q Consensus 378 ~~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~ 411 (629)
|+|+..+ +.+++++|+++|++...
T Consensus 226 ~~A~~~g----------~~~~v~~Ll~~g~~~~~ 249 (256)
T 2etb_A 226 KLAAKEG----------KIEIFRHILQREFSGAA 249 (256)
T ss_dssp HHHHHTT----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC----------CHHHHHHHHhCCCCCCC
Confidence 9999987 69999999999987653
No 51
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.98 E-value=1.6e-31 Score=256.81 Aligned_cols=193 Identities=23% Similarity=0.246 Sum_probs=124.9
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhcc
Q 048228 99 GYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSD 178 (629)
Q Consensus 99 ~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~ 178 (629)
.++.||||.||..|+.++|+.||+.++..++..|..|.||||+| +..|+.+++++|+++|++++..+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~~g~~~~~~~------------ 69 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDIEIAKALIDRGADINLQN------------ 69 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCHHHHHHHHHTTCCTTCCC------------
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCHHHHHHHHHcCCCCCCCC------------
Confidence 45788888888888888888888888755778888888888887 66788888888888888877543
Q ss_pred chhHHhhhccchHHHHHHhcCCHHHHHHHHh-CCCCcccccCCCCCcHHHHHHhcCCcceecccCCCCccccCCCCCchH
Q 048228 179 SYSVFKWEMMNRAVHAVARGGNLDILRQLLG-DCENVLAYRDVQGSTILHSASGRGQVEVLIAKSPSLISVTNSHGDTFL 257 (629)
Q Consensus 179 ~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~-~gad~~~~~d~~g~TpLh~A~~~g~~~ilL~~~gadin~~d~~g~TpL 257 (629)
..|.||||+|+..|+.+++++|++ .+++++. .+..|. |||
T Consensus 70 -------~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~~g~-------------------------------t~L 110 (201)
T 3hra_A 70 -------SISDSPYLYAGAQGRTEILAYMLKHATPDLNK-HNRYGG-------------------------------NAL 110 (201)
T ss_dssp -------TTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTC-CCTTSC-------------------------------CSH
T ss_pred -------CCCCCHHHHHHHcCCHHHHHHHHhccCccccc-ccCCCC-------------------------------cHH
Confidence 346788888888888888888884 4445542 444444 444
Q ss_pred HHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCc-----HHHHHHHhcCCCCCcccC
Q 048228 258 HMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQ-----CNLVELLMTVPSINLNIQ 332 (629)
Q Consensus 258 h~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~-----~~iv~~Ll~~~gadvn~~ 332 (629)
|+|+. .++.+++++|++.+..+ ++.+|..|+||||+|+..+ + .+++++|++ +|++++.+
T Consensus 111 ~~A~~----------~~~~~~v~~Ll~~g~~~----~~~~~~~g~t~L~~A~~~~-~~~~~~~~~v~~Ll~-~ga~~~~~ 174 (201)
T 3hra_A 111 IPAAE----------KGHIDNVKLLLEDGRED----IDFQNDFGYTALIEAVGLR-EGNQLYQDIVKLLME-NGADQSIK 174 (201)
T ss_dssp HHHHH----------TTCHHHHHHHHHHCCCC----TTCCCTTSCCHHHHHHHSS-CCSHHHHHHHHHHHH-TTCCTTCC
T ss_pred HHHHH----------cCCHHHHHHHHHcCCCC----cCCCCCCCCCHHHHHHHhc-cchhhHHHHHHHHHH-CCCCCCcc
Confidence 44444 24555555555544222 4555555555555555444 3 555555555 55555555
Q ss_pred CCCCCcHHHHHHhCCCCchHHHHHHHHHHcC
Q 048228 333 DGEGMTPLDLLKQHPRSASSEILIKQLISAG 363 (629)
Q Consensus 333 d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~G 363 (629)
|..|.||||+|+..++.+ ++++|+++|
T Consensus 175 ~~~g~t~l~~A~~~~~~~----~~~~Ll~~G 201 (201)
T 3hra_A 175 DNSGRTAMDYANQKGYTE----ISKILAQYN 201 (201)
T ss_dssp CTTSCCHHHHHHHHTCHH----HHHHHHTCC
T ss_pred CCCCCCHHHHHHHcCCHh----HHHHHHhcC
Confidence 555555555555555544 455555443
No 52
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=2.7e-31 Score=248.50 Aligned_cols=159 Identities=21% Similarity=0.188 Sum_probs=144.6
Q ss_pred cHHHHHHHCCCHHHHHHHHHhCCCchhhhhhhHhhhhccccCCCCcHHHHHHhcCcHHHHHHHhhcccccCCCcccccCC
Q 048228 21 SPIDFAAANGHYELVKELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSSVARKLLHDCETKKGHNSLIRAGY 100 (629)
Q Consensus 21 TpLh~Aa~~G~~~~v~~LL~~gad~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~~~~d~~ 100 (629)
++|+.||..|+.++|++||++|+|+|.++ .+|.||||+|+..+..+++++|++ .|++++.+|..
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d------------~~g~t~l~~a~~~~~~~~~~~ll~----~gad~~~~d~~ 69 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASD------------SDGRTPLHHAAENGHKEVVKLLIS----KGADVNAKDSD 69 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCC------------TTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcC------------CCCCCHHHHHHHcCCHHHHHHHHh----cccchhhhccC
Confidence 57999999999999999999999998754 679999999999999999999999 99999999999
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhccch
Q 048228 101 GGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSY 180 (629)
Q Consensus 101 g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~ 180 (629)
|.||||+||..|+.++|++||++|++ ++.+|.+|+||||+| +..|+.+++++|+++|++++..+
T Consensus 70 g~TpLh~A~~~g~~~~v~~Ll~~gad-vn~~d~~G~TpLh~A-~~~g~~~~v~~Ll~~gad~~~~d-------------- 133 (169)
T 4gpm_A 70 GRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHA-AENGHKEVVKLLISKGADVNTSD-------------- 133 (169)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH-HHTTCHHHHHHHHHTTCCTTCCC--------------
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHH-HHcCCHHHHHHHHHcCCCccccC--------------
Confidence 99999999999999999999999998 688999999999998 78899999999999999988653
Q ss_pred hHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCccc
Q 048228 181 SVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLA 216 (629)
Q Consensus 181 ~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~ 216 (629)
..|+||||+|+..|+.+++++|+++|+++..
T Consensus 134 -----~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 134 -----SDGRTPLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp -----TTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred -----CCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence 4588999999999999999999999999864
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=5.8e-32 Score=271.07 Aligned_cols=222 Identities=17% Similarity=0.176 Sum_probs=178.6
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHh----cCCCccccC----CCCCCCHHHHHHH--HcCCHHHHHHHHHcCCCCccccC
Q 048228 98 AGYGGWLLYTAASAGDVRFVKELLQ----RDPLLVFGE----GEYGVTDILYAAA--RSKNSEVFRLLLDNAVAPRCCLS 167 (629)
Q Consensus 98 d~~g~tpLh~A~~~g~~~~v~~LL~----~g~~~~~~~----d~~g~tpL~~AA~--~~g~~~iv~~Ll~~Ga~~~~~~~ 167 (629)
+.+|+++||.||..|+.++|+.|++ .+++. +.. |..|.||||+|+. +.|+.+++++|+++|+++....
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~- 79 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRL-TDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR- 79 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH-
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-chhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH-
Confidence 4578999999999999996555555 88774 433 4779999999942 6799999999999997654321
Q ss_pred CCCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcceecccCCCCcc
Q 048228 168 SGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVLIAKSPSLIS 247 (629)
Q Consensus 168 ~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~ilL~~~gadin 247 (629)
.+.+......|..|+||||+|+..|+.++|++|+++|++++. .+..+ + ..+.+.+
T Consensus 80 -------~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~---------------~--~~~~~~~ 134 (260)
T 3jxi_A 80 -------EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHA-QARGR---------------F--FQPKDEG 134 (260)
T ss_dssp -------HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCEEC---------------C--CSSSCCC
T ss_pred -------hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCc-ccccc---------------c--cCccccc
Confidence 001111222345799999999999999999999999999985 55421 0 1223455
Q ss_pred ccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHc---CCCCcchhhhccCCcCCchHHHHHHHcCCc---------H
Q 048228 248 VTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVS---GKIVEVKDIINVTNNNGRTALHLAVSENIQ---------C 315 (629)
Q Consensus 248 ~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~---~g~~d~~a~in~~d~~g~TpLh~A~~~~~~---------~ 315 (629)
..+..|+||||+|+. .++.+++++|++ .| +++|.+|..|+||||+|+..+ + .
T Consensus 135 ~~~~~g~tpL~~A~~----------~g~~~~v~~Ll~~~~~g-----a~~~~~d~~g~TpLh~A~~~~-~~~~~~~~~~~ 198 (260)
T 3jxi_A 135 GYFYFGELPLSLAAC----------TNQPHIVHYLTENGHKQ-----ADLRRQDSRGNTVLHALVAIA-DNTRENTKFVT 198 (260)
T ss_dssp CSCCSCSSHHHHHHH----------TTCHHHHHHHHHCSSCC-----CCTTCCCTTSCCHHHHHHHHC-CSSHHHHHHHH
T ss_pred ccccCCCCHHHHHHH----------cCCHHHHHHHHhccccC-----CCCcccCCCCCcHHHHHHHhc-cCchhHHHHHH
Confidence 666789999999999 599999999999 78 669999999999999999877 5 7
Q ss_pred HHHHHHhcCCCCCc-------ccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCC
Q 048228 316 NLVELLMTVPSINL-------NIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISN 367 (629)
Q Consensus 316 ~iv~~Ll~~~gadv-------n~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn 367 (629)
+++++|++ +|+++ +.+|..|+||||+|+..|+.+ ++++|+++|++..
T Consensus 199 ~~v~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~----~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 199 KMYDLLLI-KCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIG----IFQHIIRREIADA 252 (260)
T ss_dssp HHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCcccccccchhhcccCCCCCHHHHHHHcCCHH----HHHHHHHhCCCcc
Confidence 99999999 99999 779999999999999999988 9999999997654
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=7.9e-32 Score=270.12 Aligned_cols=199 Identities=19% Similarity=0.179 Sum_probs=171.2
Q ss_pred hccchHHHHHHhcCCHHH----HHHHHhCCCCcccccC----CCCCcHHHHHH---hcCCcce--ecccCCCC-------
Q 048228 186 EMMNRAVHAVARGGNLDI----LRQLLGDCENVLAYRD----VQGSTILHSAS---GRGQVEV--LIAKSPSL------- 245 (629)
Q Consensus 186 ~~g~t~Lh~A~~~g~~~i----v~~Ll~~gad~~~~~d----~~g~TpLh~A~---~~g~~~i--lL~~~gad------- 245 (629)
..++++||.||+.|+.++ +++|++.|++++. .+ ..|.||||+|+ ..|+.++ +|++.|++
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~-~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTD-EEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTS-GGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcch-hhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 347899999999999995 5555559999885 44 77999999999 6799998 66666543
Q ss_pred ----ccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCC--------------cCCchHHHH
Q 048228 246 ----ISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTN--------------NNGRTALHL 307 (629)
Q Consensus 246 ----in~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d--------------~~g~TpLh~ 307 (629)
++..|..|+||||+|+. .++.+++++|++.| ++++.++ ..|+||||+
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~----------~g~~~~v~~Ll~~g-----a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~ 146 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIE----------RRCKHYVELLVEKG-----ADVHAQARGRFFQPKDEGGYFYFGELPLSL 146 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHH----------TTCHHHHHHHHHTT-----CCTTCCCEECCCSSSCCCCSCCSCSSHHHH
T ss_pred hcccccccccCCCCHHHHHHH----------cCCHHHHHHHHhCC-----CCcCccccccccCcccccccccCCCCHHHH
Confidence 45556699999999999 59999999999999 6699998 689999999
Q ss_pred HHHcCCcHHHHHHHhcC--CCCCcccCCCCCCcHHHHHHhCCCC-----chHHHHHHHHHHcCCCC-------CCCCCCC
Q 048228 308 AVSENIQCNLVELLMTV--PSINLNIQDGEGMTPLDLLKQHPRS-----ASSEILIKQLISAGGIS-------NCQDNVA 373 (629)
Q Consensus 308 A~~~~~~~~iv~~Ll~~--~gadvn~~d~~G~TpLh~A~~~~~~-----~~~~~lv~~Ll~~Gadv-------n~~d~~G 373 (629)
|+..+ +.++|++|++. .|+++|.+|..|+||||+|+..++. +....++++|+++|+++ +.+|..|
T Consensus 147 A~~~g-~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g 225 (260)
T 3jxi_A 147 AACTN-QPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDG 225 (260)
T ss_dssp HHHTT-CHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTS
T ss_pred HHHcC-CHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCC
Confidence 99999 99999999995 6999999999999999999987762 11234999999999999 7899999
Q ss_pred ccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcCCCCcc
Q 048228 374 RNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTGIENAS 411 (629)
Q Consensus 374 ~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~ 411 (629)
+||||+|+..+ +.+++++||++|++...
T Consensus 226 ~tpL~~A~~~g----------~~~~v~~Ll~~g~~~~~ 253 (260)
T 3jxi_A 226 LSPLMMAAKTG----------KIGIFQHIIRREIADAA 253 (260)
T ss_dssp CCHHHHHHHTT----------CHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHcC----------CHHHHHHHHHhCCCccc
Confidence 99999999987 69999999999987653
No 55
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=2.7e-30 Score=261.80 Aligned_cols=192 Identities=20% Similarity=0.219 Sum_probs=175.4
Q ss_pred cchHHHHHHhcCCHHHHHHHHhCCCC--cccccCCCCCcHHHHHHhcCCcce--ecccCCC-CccccCCCCCchHHHHHh
Q 048228 188 MNRAVHAVARGGNLDILRQLLGDCEN--VLAYRDVQGSTILHSASGRGQVEV--LIAKSPS-LISVTNSHGDTFLHMVVA 262 (629)
Q Consensus 188 g~t~Lh~A~~~g~~~iv~~Ll~~gad--~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~ga-din~~d~~g~TpLh~A~~ 262 (629)
..+++|.|+..++.+.++.|++.+.+ ++. .|..|.||||+|+..|+.++ +|++.|+ +++..|..|.||||+|+.
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~-~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~ 154 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNI-ADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL 154 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGG
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcC-CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHH
Confidence 46889999999999999999998776 774 99999999999999999999 7777777 999999999999999994
Q ss_pred cCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHH
Q 048228 263 GFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDL 342 (629)
Q Consensus 263 ~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~ 342 (629)
..... .++.+++++|++.| ++++..+..|+||||+|+..| +.++|++|++ .|+|+|.+|..|+||||+
T Consensus 155 ~~~~~-----~~~~~~v~~Ll~~g-----~~~~~~~~~g~tpLh~A~~~g-~~~~v~~Ll~-~gad~n~~d~~G~TpLh~ 222 (276)
T 4hbd_A 155 ATLKT-----QDDIETVLQLFRLG-----NINAKASQAGQTALMLAVSHG-RVDVVKALLA-CEADVNVQDDDGSTALMC 222 (276)
T ss_dssp CCCCS-----HHHHHHHHHHHHHS-----CTTCCCTTTCCCHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHH
T ss_pred HHhhh-----hhhHHHHHHHHHcC-----CCccccCCCCCCHHHHHHHcC-CHHHHHHHHh-CCCCCCCCCCCCCCHHHH
Confidence 21100 58999999999999 568889999999999999999 9999999999 999999999999999999
Q ss_pred HHhCCCCchHHHHHHHHHH-cCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcC
Q 048228 343 LKQHPRSASSEILIKQLIS-AGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTG 406 (629)
Q Consensus 343 A~~~~~~~~~~~lv~~Ll~-~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~G 406 (629)
|+..|+.+ ++++|++ .|+|++.+|..|+||||+|+..+ +.+++++|++++
T Consensus 223 A~~~g~~~----iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g----------~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 223 ACEHGHKE----IAGLLLAVPSCDISLTDRDGSTALMVALDAG----------QSEIASMLYSRM 273 (276)
T ss_dssp HHHHTCHH----HHHHHHTSTTCCTTCCCTTSCCHHHHHHHHT----------CHHHHHHHHHHC
T ss_pred HHHCCCHH----HHHHHHhcCCCCCcCcCCCCCCHHHHHHHcC----------CHHHHHHHHhcc
Confidence 99999988 9999999 89999999999999999999987 699999999875
No 56
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=6.7e-31 Score=276.82 Aligned_cols=272 Identities=13% Similarity=-0.010 Sum_probs=186.5
Q ss_pred CcHHHHHHH-CCCHHHHHHHHHhCCCchhhhhhhHhhhhccccCCCCcHHHHHHhcCcHHHHHHHhhcccccCCCc---c
Q 048228 20 ASPIDFAAA-NGHYELVKELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSSVARKLLHDCETKKGHNS---L 95 (629)
Q Consensus 20 ~TpLh~Aa~-~G~~~~v~~LL~~gad~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~---~ 95 (629)
.+++++|+. .++.+++++|+++|++. .||||+|++.|+.+++++|++ +|+.. +
T Consensus 66 ll~~~~a~~~~~~~~~~~~l~~~g~~~-------------------~T~Lh~Aa~~G~~e~v~~Ll~----~ga~~~~~~ 122 (376)
T 2aja_A 66 LLCLYYAHYNRNAKQLWSDAHKKGIKS-------------------EVICFVAAITGCSSALDTLCL----LLTSDEIVK 122 (376)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHHHTCCH-------------------HHHHHHHHHHCCHHHHHHHTT----C--CCSSCC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCCCc-------------------CCHHHHHHHcCCHHHHHHHHH----cCCcHHHHH
Confidence 367888877 58889999999988763 489999999999999999999 66622 2
Q ss_pred cccCCCChHHHHHHHcCCHHHHHHHHhcCCCc--cccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchh
Q 048228 96 IRAGYGGWLLYTAASAGDVRFVKELLQRDPLL--VFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFE 173 (629)
Q Consensus 96 ~~d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~--~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~ 173 (629)
..+..|.||||+||..|+.++|++|+++|++. .+..+.+ .||||+| +..|+.++|++|+++|++++.
T Consensus 123 ~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~A-a~~G~~eiv~~Ll~~ga~~~~--------- 191 (376)
T 2aja_A 123 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLA-AENGHLHVLNRLCELAPTEAT--------- 191 (376)
T ss_dssp --CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHH-HHTTCHHHHHHHHHSCGGGHH---------
T ss_pred HhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHH-HHCCCHHHHHHHHHcCCccch---------
Confidence 34456889999999999999999999999741 1122222 8999998 788999999999999986652
Q ss_pred hhhccchhHHhhhccchHHHHHH-hcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccC
Q 048228 174 EKLSDSYSVFKWEMMNRAVHAVA-RGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTN 250 (629)
Q Consensus 174 ~~~~~~~~~~~d~~g~t~Lh~A~-~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d 250 (629)
...+..|.||||+|+ ..|+.++|++|+++|++ |.||||+|+..|+.++ +|.+.|++++..+
T Consensus 192 --------~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~--------~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~ 255 (376)
T 2aja_A 192 --------AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM--------LAYAEIHEFEYGEKYVNPFIARHVNRLKEMH 255 (376)
T ss_dssp --------HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH--------HHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH
T ss_pred --------hccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc--------cchHHHHHHHCCCHHHHHHHHhcCccccccc
Confidence 114566889999999 99999999999998743 7899999999999999 8888888887654
Q ss_pred CCCCchHHHHHhcCCCCCccc-----------------cccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCC
Q 048228 251 SHGDTFLHMVVAGFRSPGFRR-----------------VDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENI 313 (629)
Q Consensus 251 ~~g~TpLh~A~~~~~~~~~~~-----------------~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~ 313 (629)
++++.|+..+....... -.+..+.+++|++.+.+...+........+.||||+|+..|
T Consensus 256 ----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g- 330 (376)
T 2aja_A 256 ----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLG- 330 (376)
T ss_dssp ----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHT-
T ss_pred ----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcC-
Confidence 35555655433221110 02345566666654322211111222334567777777777
Q ss_pred cHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCc
Q 048228 314 QCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSA 350 (629)
Q Consensus 314 ~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~ 350 (629)
+.++|++|++ .| ..++..|+|++.+|-..|+.+
T Consensus 331 ~~e~v~lLl~-~~---~v~~~~~~~~~~~~~~~~~~~ 363 (376)
T 2aja_A 331 NQGACALLLS-IP---SVLALTKANNYYINETGGRLD 363 (376)
T ss_dssp CTTHHHHHTT-SH---HHHHSCC--------------
T ss_pred cHHHHHHHHc-Ch---HHHHHHHHhcccccccccccc
Confidence 7777777777 44 556667777777777777776
No 57
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=2.5e-28 Score=228.24 Aligned_cols=157 Identities=19% Similarity=0.064 Sum_probs=145.0
Q ss_pred CCCcHHHHHHHCCCHHHHHHHHHhCCCchhhhhhhHhhhhccccCCCCcHHHHHHhcCcHHHHHHHhhcccccCCCcccc
Q 048228 18 WYASPIDFAAANGHYELVKELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSSVARKLLHDCETKKGHNSLIR 97 (629)
Q Consensus 18 ~g~TpLh~Aa~~G~~~~v~~LL~~gad~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~~~~ 97 (629)
.+.||||+||..|+.++|++|+++|++++.++ ..|.||||+|+..++.+++++|++ +|++++..
T Consensus 13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~------------~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~ 76 (169)
T 2y1l_E 13 DLGKKLLEAARAGRDDEVRILMANGADVNAED------------ASGWTPLHLAAFNGHLEIVEVLLK----NGADVNAV 76 (169)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC------------TTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCC
T ss_pred cccchHHHHHHcCCHHHHHHHHHCCCCCCCCC------------CCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCcc
Confidence 45599999999999999999999999998643 679999999999999999999999 89999999
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhc
Q 048228 98 AGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLS 177 (629)
Q Consensus 98 d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~ 177 (629)
|..|.||||+|+..|+.+++++|+++|++ ++..|..|.||||+| +..|+.+++++|+++|++++..+
T Consensus 77 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~~g~~~~~~~----------- 143 (169)
T 2y1l_E 77 DHAGMTPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLA-AMFGHLEIVEVLLKNGADVNAQD----------- 143 (169)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH-HHTTCHHHHHHHHHTTCCTTCCC-----------
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHH-HHcCCHHHHHHHHHcCCCCCCcC-----------
Confidence 99999999999999999999999999988 588899999999998 78899999999999999887553
Q ss_pred cchhHHhhhccchHHHHHHhcCCHHHHHHHHhCC
Q 048228 178 DSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDC 211 (629)
Q Consensus 178 ~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~g 211 (629)
..|.||||+|+..|+.+++++|++.|
T Consensus 144 --------~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 144 --------KFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp --------TTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred --------CCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 45789999999999999999999876
No 58
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=3e-29 Score=234.93 Aligned_cols=167 Identities=22% Similarity=0.244 Sum_probs=151.3
Q ss_pred chHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCCCchHHHHHhcCCC
Q 048228 189 NRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFLHMVVAGFRS 266 (629)
Q Consensus 189 ~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~TpLh~A~~~~~~ 266 (629)
.+|||.|+..|+.+++++|++.|.+.....+..|.||||+|+..|+.++ +|++.|++++..|..|.||||+|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~---- 78 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLAST---- 78 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHH----
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHH----
Confidence 5899999999999999999999998333589999999999999999999 7778899999999999999999999
Q ss_pred CCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhC
Q 048228 267 PGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQH 346 (629)
Q Consensus 267 ~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~ 346 (629)
.++.+++++|++.| ++++.+|..|+||||+|+..+ +.+++++|++ .|++++.+|..|.||||+|+..
T Consensus 79 ------~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~ 145 (172)
T 3v30_A 79 ------GGYTDIVGLLLERD-----VDINIYDWNGGTPLLYAVRGN-HVKCVEALLA-RGADLTTEADSGYTPMDLAVAL 145 (172)
T ss_dssp ------TTCHHHHHHHHTTT-----CCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHH
T ss_pred ------CCCHHHHHHHHHcC-----CCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCccccCCCCCCHHHHHHHh
Confidence 59999999999999 669999999999999999999 9999999999 9999999999999999999999
Q ss_pred CCCchHHHHHHHHHHcCCCCCCCCCCCccH
Q 048228 347 PRSASSEILIKQLISAGGISNCQDNVARNA 376 (629)
Q Consensus 347 ~~~~~~~~lv~~Ll~~Gadvn~~d~~G~Tp 376 (629)
++.+ ++++|+++|+++...+..|.||
T Consensus 146 ~~~~----~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 146 GYRK----VQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp TCHH----HHHHHHHHHHHHSCC-------
T ss_pred CcHH----HHHHHHHHHHHHhcccCCCCCC
Confidence 9988 9999999999999999999887
No 59
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=8.4e-29 Score=231.88 Aligned_cols=167 Identities=17% Similarity=0.186 Sum_probs=148.9
Q ss_pred CCcHHHHHHhcCCcce---ecccCCCCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCC
Q 048228 222 GSTILHSASGRGQVEV---LIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTN 298 (629)
Q Consensus 222 g~TpLh~A~~~g~~~i---lL~~~gadin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d 298 (629)
+.||||.|+..|+.++ ++...+..++..|..|+||||+|+. .++.+++++|++.| ++++.+|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~----------~~~~~~v~~Ll~~g-----~~~~~~~ 66 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASA----------FGEIETVRFLLEWG-----ADPHILA 66 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHH----------TTCHHHHHHHHHHT-----CCTTCCC
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHH----------cCCHHHHHHHHHcC-----CCchhhc
Confidence 5789999999999998 5555444589999999999999999 59999999999999 6699999
Q ss_pred cCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHH
Q 048228 299 NNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNAIA 378 (629)
Q Consensus 299 ~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~ 378 (629)
..|+||||+|+..+ +.+++++|++ .|+++|.+|..|+||||+|+..++.+ ++++|+++|++++.+|..|+|||+
T Consensus 67 ~~g~t~L~~A~~~~-~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~t~l~ 140 (172)
T 3v30_A 67 KERESALSLASTGG-YTDIVGLLLE-RDVDINIYDWNGGTPLLYAVRGNHVK----CVEALLARGADLTTEADSGYTPMD 140 (172)
T ss_dssp TTCCCHHHHHHHTT-CHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred ccCCCHHHHHHHCC-CHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHH
Confidence 99999999999999 9999999999 99999999999999999999999988 999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCChhhHHHHHHcCCCCccccccCCCh
Q 048228 379 CHLKGQGIGVSPGSSFRVPDAEIFLYTGIENASDAICDAAS 419 (629)
Q Consensus 379 ~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~d~~g~t~ 419 (629)
+|+..+ +.+++++|+++|+++...+..|.||
T Consensus 141 ~A~~~~----------~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 141 LAVALG----------YRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHHT----------CHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHhC----------cHHHHHHHHHHHHHHhcccCCCCCC
Confidence 999987 6999999999999999888887776
No 60
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=1.4e-28 Score=234.89 Aligned_cols=158 Identities=23% Similarity=0.233 Sum_probs=131.7
Q ss_pred cCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhc
Q 048228 218 RDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIIN 295 (629)
Q Consensus 218 ~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in 295 (629)
+|..|.||||+|+..|+.++ +|++.|++++..|..|+||||+|+. .++.+++++|++.| ++++
T Consensus 31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~----------~~~~~~v~~Ll~~g-----~~~~ 95 (192)
T 2rfm_A 31 RDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVK----------NNRLGIAEKLLSKG-----SNVN 95 (192)
T ss_dssp CCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHH----------TTCHHHHHHHHHHT-----CCTT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHH----------cCCHHHHHHHHHCC-----CCCC
Confidence 66677777777777777766 5555667777777888888888888 48888999998888 5688
Q ss_pred cCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCcc
Q 048228 296 VTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARN 375 (629)
Q Consensus 296 ~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~T 375 (629)
.+|..|.||||+|+..+ +.+++++|++ .|++++.+|..|.||||+|+..++.+ ++++|+++|++++.+|..|+|
T Consensus 96 ~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~t 169 (192)
T 2rfm_A 96 TKDFSGKTPLMWSIIFG-YSEMSYFLLE-HGANVNDRNLEGETPLIVASKYGRSE----IVKKLLELGADISARDLTGLT 169 (192)
T ss_dssp CCCTTSCCHHHHHHHHT-CHHHHHHHHH-TTCCSSCCCTTCCCHHHHHHHHTCHH----HHHHHHHTTCCTTCBCTTSCB
T ss_pred CCCCCCCcHHHHHHHcC-CHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCC
Confidence 88888999999999888 8899999998 89999988888999999999888877 888888889999988889999
Q ss_pred HHHHHHHhCCCCCCCCCCCChhhHHHHHHcC
Q 048228 376 AIACHLKGQGIGVSPGSSFRVPDAEIFLYTG 406 (629)
Q Consensus 376 pL~~A~~~~~~~~~~~~~~~~~~v~~LL~~G 406 (629)
||++|+..+ +.+++++|+++|
T Consensus 170 ~l~~A~~~~----------~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 170 AEASARIFG----------RQEVIKIFTEVR 190 (192)
T ss_dssp HHHHHHHTT----------CHHHHHHHHHHH
T ss_pred HHHHHHHhC----------cHHHHHHHHhcc
Confidence 999988876 588899888875
No 61
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=7.4e-32 Score=265.51 Aligned_cols=192 Identities=17% Similarity=0.135 Sum_probs=165.2
Q ss_pred HHHHHHcCCCCccccCCCCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHh
Q 048228 152 FRLLLDNAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASG 231 (629)
Q Consensus 152 v~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~ 231 (629)
++.||++|++++..... +..+.||||+|+..|+.++|++|+++|++++. .|..|.||||+|+.
T Consensus 1 v~~ll~~~~~~~~~~~~----------------~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~tpLh~A~~ 63 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRA----------------RLNPLVLLLDAALTGELEVVQQAVKEMNDPSQ-PNEEGITALHNAIC 63 (229)
T ss_dssp ---------CCCCCCCT----------------TSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTC-CCTTSCCHHHHHHH
T ss_pred CeehhccCCCCcccccc----------------ccchhHHHHHHHHcCCHHHHHHHHhcCCCCCC-CCCCCCCHHHHHHH
Confidence 46789999988865432 34577999999999999999999999999995 99999999999999
Q ss_pred cCCcce--ecccCCCCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCC-cCCchHHHHH
Q 048228 232 RGQVEV--LIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTN-NNGRTALHLA 308 (629)
Q Consensus 232 ~g~~~i--lL~~~gadin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d-~~g~TpLh~A 308 (629)
.|+.++ +|++.|++++.+|..|+||||+|+. .++.+++++|++.| ++++.++ ..|+||||+|
T Consensus 64 ~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~----------~g~~~~v~~Ll~~g-----a~~~~~~~~~g~tpL~~A 128 (229)
T 2vge_A 64 GANYSIVDFLITAGANVNSPDSHGWTPLHCAAS----------CNDTVICMALVQHG-----AAIFATTLSDGATAFEKC 128 (229)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH----------TTCHHHHHHHHTTT-----CCTTCCCSSTTCCTGGGC
T ss_pred cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH----------cCCHHHHHHHHHcC-----CCcccccCCCCCCHHHHH
Confidence 999999 7888899999999999999999999 59999999999999 6699986 6999999999
Q ss_pred --HHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCC--CCCCCCCCccHHHHHHHhC
Q 048228 309 --VSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGI--SNCQDNVARNAIACHLKGQ 384 (629)
Q Consensus 309 --~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gad--vn~~d~~G~TpL~~A~~~~ 384 (629)
+..+ +.+++++|++ .|++++.+|..|.|||+.++.... .++|++.|++ ++.+|..|+||||+|+..+
T Consensus 129 ~a~~~~-~~~~v~~Ll~-~ga~~~~~~~~~~~~l~~~~~~~~-------~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g 199 (229)
T 2vge_A 129 DPYREG-YADCATYLAD-VEQSMGLMNSGAVYALWDYSAEFG-------DELSFREGESVTVLRRDGPEETDWWWAALHG 199 (229)
T ss_dssp CTTSTT-HHHHHHHHHH-HHHHTTTSGGGEEEESSCBCCSST-------TBCCBCTTCEEEEEESSCTTCSSEEEEEETT
T ss_pred HHHhcC-hHHHHHHHHH-cCCCcccccCCchHHHHHHhhccc-------cccCccccccccccccCCCcccHHHHHHHcC
Confidence 8888 9999999999 999999999999999997666653 3567788998 7889999999999999876
No 62
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=1.3e-28 Score=228.05 Aligned_cols=155 Identities=22% Similarity=0.304 Sum_probs=145.7
Q ss_pred cchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCCCchHHHHHhcCC
Q 048228 188 MNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFLHMVVAGFR 265 (629)
Q Consensus 188 g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~TpLh~A~~~~~ 265 (629)
..||||.|+..|+.++|++|+++|++++. .+..|.||||+|+. |+.++ +|++.|++++.+|..|.||||+|+.
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~--- 79 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAAR--- 79 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTC-CCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH---
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCccc-cCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH---
Confidence 45999999999999999999999999985 99999999999999 99998 7788899999999999999999999
Q ss_pred CCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCC-cccCCCCCCcHHHHHH
Q 048228 266 SPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSIN-LNIQDGEGMTPLDLLK 344 (629)
Q Consensus 266 ~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gad-vn~~d~~G~TpLh~A~ 344 (629)
.++.+++++|++.| ++++.+|..|+||||+|+..+ +.+++++|++ .|++ ++.+|..|.||||+|+
T Consensus 80 -------~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~g~~~~~~~~~~g~t~l~~A~ 145 (162)
T 1ihb_A 80 -------AGFLDTLQTLLEFQ-----ADVNIEDNEGNLPLHLAAKEG-HLRVVEFLVK-HTASNVGHRNHKGDTACDLAR 145 (162)
T ss_dssp -------HTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHH-HSCCCTTCCCTTSCCHHHHHH
T ss_pred -------cCCHHHHHHHHHcC-----CCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHH-ccCCCCCCcCCCCCcHHHHHH
Confidence 59999999999999 669999999999999999999 9999999999 9998 6999999999999999
Q ss_pred hCCCCchHHHHHHHHHHcCCC
Q 048228 345 QHPRSASSEILIKQLISAGGI 365 (629)
Q Consensus 345 ~~~~~~~~~~lv~~Ll~~Gad 365 (629)
..++.+ ++++|+++|||
T Consensus 146 ~~~~~~----~~~~Ll~~GAd 162 (162)
T 1ihb_A 146 LYGRNE----VVSLMQANGAG 162 (162)
T ss_dssp HTTCHH----HHHHHHHTC--
T ss_pred HcCCHH----HHHHHHHhCCC
Confidence 999988 99999999986
No 63
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=7e-29 Score=236.94 Aligned_cols=159 Identities=17% Similarity=0.194 Sum_probs=150.4
Q ss_pred HhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCCCchHHHH
Q 048228 183 FKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFLHMV 260 (629)
Q Consensus 183 ~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~TpLh~A 260 (629)
.+|..|+||||+|+..|+.++|++|+++|++++. .+..|.||||+|+..++.++ +|++.|++++..|..|.||||+|
T Consensus 30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 108 (192)
T 2rfm_A 30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLED-KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS 108 (192)
T ss_dssp CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHhcccccc-ccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 4577899999999999999999999999999985 99999999999999999999 77888999999999999999999
Q ss_pred HhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHH
Q 048228 261 VAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPL 340 (629)
Q Consensus 261 ~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpL 340 (629)
+. .++.+++++|++.| ++++.+|..|.||||+|+..+ +.+++++|++ +|++++.+|..|.|||
T Consensus 109 ~~----------~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~ga~~~~~~~~g~t~l 171 (192)
T 2rfm_A 109 II----------FGYSEMSYFLLEHG-----ANVNDRNLEGETPLIVASKYG-RSEIVKKLLE-LGADISARDLTGLTAE 171 (192)
T ss_dssp HH----------HTCHHHHHHHHHTT-----CCSSCCCTTCCCHHHHHHHHT-CHHHHHHHHH-TTCCTTCBCTTSCBHH
T ss_pred HH----------cCCHHHHHHHHHCC-----CCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHH-CCCCCCCcCCCCCCHH
Confidence 99 59999999999999 669999999999999999999 9999999999 9999999999999999
Q ss_pred HHHHhCCCCchHHHHHHHHHHcC
Q 048228 341 DLLKQHPRSASSEILIKQLISAG 363 (629)
Q Consensus 341 h~A~~~~~~~~~~~lv~~Ll~~G 363 (629)
|+|+..++.+ ++++|+++|
T Consensus 172 ~~A~~~~~~~----~v~~Ll~~~ 190 (192)
T 2rfm_A 172 ASARIFGRQE----VIKIFTEVR 190 (192)
T ss_dssp HHHHHTTCHH----HHHHHHHHH
T ss_pred HHHHHhCcHH----HHHHHHhcc
Confidence 9999999988 888888765
No 64
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.3e-30 Score=256.51 Aligned_cols=204 Identities=12% Similarity=-0.028 Sum_probs=170.5
Q ss_pred HHHHHHhCCCchhhhhhhHhhhhccccCCCCcHHHHHHhcCcHHHHHHHhhcccccCCCcccccCCCChHHHHHHHcCCH
Q 048228 35 VKELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSSVARKLLHDCETKKGHNSLIRAGYGGWLLYTAASAGDV 114 (629)
Q Consensus 35 v~~LL~~gad~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~~~~d~~g~tpLh~A~~~g~~ 114 (629)
|+.||+.|++++... ....++.||||+|+..|+.+++++|++ .|++++.+|..|.||||+||..|+.
T Consensus 1 v~~ll~~~~~~~~~~---------~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~d~~g~tpLh~A~~~g~~ 67 (229)
T 2vge_A 1 MRSVLRKAGSPRKAR---------RARLNPLVLLLDAALTGELEVVQQAVK----EMNDPSQPNEEGITALHNAICGANY 67 (229)
T ss_dssp ---------CCCCCC---------CTTSCHHHHHHHHHHHTCHHHHHHHHH----HSSCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CeehhccCCCCcccc---------ccccchhHHHHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 578999999987543 234567889999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhccchhHHhhhccchHHHH
Q 048228 115 RFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHA 194 (629)
Q Consensus 115 ~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~ 194 (629)
++|++|+++|++ ++..|..|.||||+| +..|+.+++++|+++|++++.... ..|+||||+
T Consensus 68 ~~v~~Ll~~ga~-~n~~d~~g~tpLh~A-~~~g~~~~v~~Ll~~ga~~~~~~~------------------~~g~tpL~~ 127 (229)
T 2vge_A 68 SIVDFLITAGAN-VNSPDSHGWTPLHCA-ASCNDTVICMALVQHGAAIFATTL------------------SDGATAFEK 127 (229)
T ss_dssp HHHHHHHHTTCC-TTCCCTTCCCHHHHH-HHTTCHHHHHHHHTTTCCTTCCCS------------------STTCCTGGG
T ss_pred HHHHHHHHCCCC-CCCCCCCCCCHHHHH-HHcCCHHHHHHHHHcCCCcccccC------------------CCCCCHHHH
Confidence 999999999988 688999999999998 778999999999999999986532 347899999
Q ss_pred H--HhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcceecccCCCC--ccccCCCCCchHHHHHhcCCCCCcc
Q 048228 195 V--ARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVLIAKSPSL--ISVTNSHGDTFLHMVVAGFRSPGFR 270 (629)
Q Consensus 195 A--~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~ilL~~~gad--in~~d~~g~TpLh~A~~~~~~~~~~ 270 (629)
| +..|+.+++++|+++|++++. .|..|.||||.++.....++ |+..|++ ++.+|..|+||||+|+.
T Consensus 128 A~a~~~~~~~~v~~Ll~~ga~~~~-~~~~~~~~l~~~~~~~~~~~-ll~~ga~~~~~~~d~~G~TpL~~A~~-------- 197 (229)
T 2vge_A 128 CDPYREGYADCATYLADVEQSMGL-MNSGAVYALWDYSAEFGDEL-SFREGESVTVLRRDGPEETDWWWAAL-------- 197 (229)
T ss_dssp CCTTSTTHHHHHHHHHHHHHHTTT-SGGGEEEESSCBCCSSTTBC-CBCTTCEEEEEESSCTTCSSEEEEEE--------
T ss_pred HHHHhcChHHHHHHHHHcCCCccc-ccCCchHHHHHHhhcccccc-CccccccccccccCCCcccHHHHHHH--------
Confidence 9 999999999999999999995 89999999997766665554 4556787 78889999999999999
Q ss_pred ccccHHHHHHHHH
Q 048228 271 RVDHQIQLMEQLV 283 (629)
Q Consensus 271 ~~~~~~eivk~Ll 283 (629)
.|+.++|+.++
T Consensus 198 --~g~~~~v~~~~ 208 (229)
T 2vge_A 198 --HGQEGYVPRNY 208 (229)
T ss_dssp --TTEEEEEEGGG
T ss_pred --cCCcceeehhh
Confidence 47888776644
No 65
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=1.2e-28 Score=249.84 Aligned_cols=189 Identities=21% Similarity=0.189 Sum_probs=169.6
Q ss_pred CCcHHHHHHhcCcHHHHHHHhhcccccCCC--cccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHH
Q 048228 64 DEEQFDDVAKCRSSVARKLLHDCETKKGHN--SLIRAGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILY 141 (629)
Q Consensus 64 ~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~--~~~~d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~ 141 (629)
..+++|.|+..+..+.++.+++ .+.+ +|.+|..|.||||+||..|+.++|++||+.|+..++..+..|.||||+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~----~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~ 151 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSA----RLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIML 151 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCH----HHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHH----HHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHH
Confidence 5678889999988888888877 4444 788999999999999999999999999999996689999999999999
Q ss_pred HHH----HcCCHHHHHHHHHcCCCCccccCCCCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccc
Q 048228 142 AAA----RSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAY 217 (629)
Q Consensus 142 AA~----~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~ 217 (629)
|+. ..++.+++++|++.|++++.. +..|+||||+|+..|+.++|++|+++|++++.
T Consensus 152 a~~~~~~~~~~~~~v~~Ll~~g~~~~~~-------------------~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~- 211 (276)
T 4hbd_A 152 TALATLKTQDDIETVLQLFRLGNINAKA-------------------SQAGQTALMLAVSHGRVDVVKALLACEADVNV- 211 (276)
T ss_dssp GGGCCCCSHHHHHHHHHHHHHSCTTCCC-------------------TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-
T ss_pred HHHHHhhhhhhHHHHHHHHHcCCCcccc-------------------CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-
Confidence 842 558899999999999876644 34588999999999999999999999999995
Q ss_pred cCCCCCcHHHHHHhcCCcce--eccc-CCCCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCC
Q 048228 218 RDVQGSTILHSASGRGQVEV--LIAK-SPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGK 286 (629)
Q Consensus 218 ~d~~g~TpLh~A~~~g~~~i--lL~~-~gadin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g 286 (629)
+|..|.||||+|+..|+.++ +|++ .|++++.+|..|+||||+|+. .++.+++++|+++.
T Consensus 212 ~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~----------~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 212 QDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALD----------AGQSEIASMLYSRM 273 (276)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHH----------HTCHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHH----------cCCHHHHHHHHhcc
Confidence 99999999999999999999 5555 899999999999999999999 59999999999876
No 66
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=1.3e-30 Score=274.75 Aligned_cols=253 Identities=11% Similarity=0.012 Sum_probs=168.2
Q ss_pred CChHHHHHHH-cCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhccc
Q 048228 101 GGWLLYTAAS-AGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDS 179 (629)
Q Consensus 101 g~tpLh~A~~-~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~ 179 (629)
+.+++++|.. .++.+++++|+++|.+ +.||||+| ++.|+.++|++|+++|+......
T Consensus 65 ~ll~~~~a~~~~~~~~~~~~l~~~g~~--------~~T~Lh~A-a~~G~~e~v~~Ll~~ga~~~~~~------------- 122 (376)
T 2aja_A 65 QLLCLYYAHYNRNAKQLWSDAHKKGIK--------SEVICFVA-AITGCSSALDTLCLLLTSDEIVK------------- 122 (376)
T ss_dssp HHHHHHHHHTTTTCTTHHHHHHHHTCC--------HHHHHHHH-HHHCCHHHHHHHTTC--CCSSCC-------------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCC--------cCCHHHHH-HHcCCHHHHHHHHHcCCcHHHHH-------------
Confidence 4556777766 4677777777776644 23777777 66688888888887776221110
Q ss_pred hhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcc--cccCCCCCcHHHHHHhcCCcce--ecccCCCCccc--cCCCC
Q 048228 180 YSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVL--AYRDVQGSTILHSASGRGQVEV--LIAKSPSLISV--TNSHG 253 (629)
Q Consensus 180 ~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~--~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~--~d~~g 253 (629)
..+..|.||||+|+..|+.++|++|+++|+++. ...+.+ .||||+|+..|+.++ +|++.|++++. .|..|
T Consensus 123 ---~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g 198 (376)
T 2aja_A 123 ---VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAEN 198 (376)
T ss_dssp -----CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred ---HhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCC
Confidence 012235578888888888888888888876421 012222 778888888888777 66677777776 77778
Q ss_pred CchHHHHH-hcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccC
Q 048228 254 DTFLHMVV-AGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQ 332 (629)
Q Consensus 254 ~TpLh~A~-~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~ 332 (629)
.||||+|+ . .|+.++|++|++.| + .|.||||+|+..| +.+++++|++ +|++++..
T Consensus 199 ~TpL~~Aa~~----------~G~~eiv~~Ll~~g-----a-------~~~taL~~Aa~~g-~~evv~lL~~-~ga~~~~~ 254 (376)
T 2aja_A 199 YYAFRWAAVG----------RGHHNVINFLLDCP-----V-------MLAYAEIHEFEYG-EKYVNPFIAR-HVNRLKEM 254 (376)
T ss_dssp HHHHHHHHST----------TCCHHHHHHHTTSH-----H-------HHHHHHHCTTTTT-TTTHHHHHHH-HHHHHHHH
T ss_pred CCHHHHHHHH----------CCCHHHHHHHHhCC-----C-------ccchHHHHHHHCC-CHHHHHHHHh-cCcccccc
Confidence 88888888 7 58888888888866 2 2788888888888 8888888888 88888765
Q ss_pred CCCCCcHHHHHHhCCCCchHH-----------------------HHHHHHHH---------cCCCCCCCCCCCccHHHHH
Q 048228 333 DGEGMTPLDLLKQHPRSASSE-----------------------ILIKQLIS---------AGGISNCQDNVARNAIACH 380 (629)
Q Consensus 333 d~~G~TpLh~A~~~~~~~~~~-----------------------~lv~~Ll~---------~Gadvn~~d~~G~TpL~~A 380 (629)
+ ++++.|+..|+.+.+. ..+++|++ .|+++ +.+.|||++|
T Consensus 255 ~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~----n~~~~~L~~A 326 (376)
T 2aja_A 255 H----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIP----GDANELLRLA 326 (376)
T ss_dssp H----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSST----TCCCHHHHHH
T ss_pred c----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCC----CCccHHHHHH
Confidence 4 3566677777666331 12344443 23333 4567999999
Q ss_pred HHhCCCCCCCCCCCChhhHHHHHHcCCCCccccccCCChhhhhh
Q 048228 381 LKGQGIGVSPGSSFRVPDAEIFLYTGIENASDAICDAASVEYSS 424 (629)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~d~~g~t~~~~a~ 424 (629)
+..+ +.++|++|++.| ...+..++|+..++.
T Consensus 327 ~~~g----------~~e~v~lLl~~~---~v~~~~~~~~~~~~~ 357 (376)
T 2aja_A 327 LRLG----------NQGACALLLSIP---SVLALTKANNYYINE 357 (376)
T ss_dssp HHHT----------CTTHHHHHTTSH---HHHHSCC--------
T ss_pred HHcC----------cHHHHHHHHcCh---HHHHHHHHhcccccc
Confidence 9987 689999999876 566778888877653
No 67
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=3.1e-28 Score=225.46 Aligned_cols=156 Identities=17% Similarity=0.210 Sum_probs=145.6
Q ss_pred CCCcHHHHHHhcCCcce--ecccCCCCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCC
Q 048228 221 QGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTN 298 (629)
Q Consensus 221 ~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d 298 (629)
...||||.|+..|+.++ .|++.|++++..|..|+||||+|+. ++.+++++|++.| ++++.+|
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-----------~~~~~v~~Ll~~g-----~~~~~~~ 67 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-----------GNPEIARRLLLRG-----ANPDLKD 67 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-----------SCHHHHHHHHHTT-----CCTTCCC
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-----------CcHHHHHHHHHcC-----CCCCCCC
Confidence 45699999999999999 6778899999999999999999987 7899999999999 6699999
Q ss_pred cCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCC-CCCCCCCCccHH
Q 048228 299 NNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGI-SNCQDNVARNAI 377 (629)
Q Consensus 299 ~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gad-vn~~d~~G~TpL 377 (629)
..|+||||+|+..+ +.+++++|++ .|+++|.+|..|.||||+|+..++.+ ++++|+++|++ ++.+|..|+|||
T Consensus 68 ~~g~t~L~~A~~~~-~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~~g~t~l 141 (162)
T 1ihb_A 68 RTGFAVIHDAARAG-FLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLR----VVEFLVKHTASNVGHRNHKGDTAC 141 (162)
T ss_dssp TTSCCHHHHHHHHT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHHSCCCTTCCCTTSCCHH
T ss_pred CCCCCHHHHHHHcC-CHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHHccCCCCCCcCCCCCcHH
Confidence 99999999999999 9999999999 99999999999999999999999988 99999999998 699999999999
Q ss_pred HHHHHhCCCCCCCCCCCChhhHHHHHHcCCC
Q 048228 378 ACHLKGQGIGVSPGSSFRVPDAEIFLYTGIE 408 (629)
Q Consensus 378 ~~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad 408 (629)
|+|+..+ +.+++++|+++|||
T Consensus 142 ~~A~~~~----------~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 142 DLARLYG----------RNEVVSLMQANGAG 162 (162)
T ss_dssp HHHHHTT----------CHHHHHHHHHTC--
T ss_pred HHHHHcC----------CHHHHHHHHHhCCC
Confidence 9999987 69999999999996
No 68
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=4.9e-28 Score=226.26 Aligned_cols=156 Identities=26% Similarity=0.350 Sum_probs=146.7
Q ss_pred hccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCCCchHHHHHhc
Q 048228 186 EMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFLHMVVAG 263 (629)
Q Consensus 186 ~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~TpLh~A~~~ 263 (629)
..+.++||.|++.|+.++|++|+++|++++. .|..|.||||+|+..|+.++ +|++.|++++..|..|.||||+|+.
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~- 89 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANGADVNA-EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL- 89 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH-
Confidence 3457999999999999999999999999995 99999999999999999999 7788899999999999999999999
Q ss_pred CCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHH
Q 048228 264 FRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLL 343 (629)
Q Consensus 264 ~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A 343 (629)
.++.+++++|++.| ++++.+|..|+||||+|+..+ +.+++++|++ +|++++.+|..|.||||+|
T Consensus 90 ---------~~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A 153 (169)
T 2y1l_E 90 ---------FGHLEIVEVLLKNG-----ADVNANDMEGHTPLHLAAMFG-HLEIVEVLLK-NGADVNAQDKFGKTAFDIS 153 (169)
T ss_dssp ---------TTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHH
T ss_pred ---------cCCHHHHHHHHHcC-----CCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCCCCcCCCCCCHHHHH
Confidence 59999999999999 669999999999999999999 9999999999 9999999999999999999
Q ss_pred HhCCCCchHHHHHHHHHHcC
Q 048228 344 KQHPRSASSEILIKQLISAG 363 (629)
Q Consensus 344 ~~~~~~~~~~~lv~~Ll~~G 363 (629)
+..++.+ ++++|++.|
T Consensus 154 ~~~~~~~----~~~~L~~~G 169 (169)
T 2y1l_E 154 IDNGNED----LAEILQKLN 169 (169)
T ss_dssp HHTTCHH----HHHHHHTC-
T ss_pred HHhCCHH----HHHHHHHcC
Confidence 9999988 899998876
No 69
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=4.5e-30 Score=254.43 Aligned_cols=204 Identities=16% Similarity=0.067 Sum_probs=146.1
Q ss_pred ccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCCCchHHHHHhcC
Q 048228 187 MMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFLHMVVAGF 264 (629)
Q Consensus 187 ~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~TpLh~A~~~~ 264 (629)
.|.||||.|+..++.++++.||++|++++ .+..|.||||+|+..|+.++ +|++.|++++.+|..|+||||+|+.
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~-- 79 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC-- 79 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHH--
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH--
Confidence 47899999999999999999999999998 46889999999999999999 7788999999999999999999999
Q ss_pred CCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCC-cHHHHH
Q 048228 265 RSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGM-TPLDLL 343 (629)
Q Consensus 265 ~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~-TpLh~A 343 (629)
.++.+++++|+++| +++|.+|..|+||||+|+..+ +.++|++|++ +|++++.+|..|. ||||+|
T Consensus 80 --------~g~~~~v~~Ll~~g-----a~~~~~d~~g~tpL~~A~~~~-~~~~v~~Ll~-~ga~~~~~~~~~~~t~l~~a 144 (239)
T 1ycs_B 80 --------AGHTEIVKFLVQFG-----VNVNAADSDGWTPLHCAASCN-NVQVCKFLVE-SGAAVFAMTYSDMQTAADKC 144 (239)
T ss_dssp --------HTCHHHHHHHHHHT-----CCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCSSSCCCHHHHC
T ss_pred --------cCCHHHHHHHHHcC-----CCCCccCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCcceecCCCCcchHHHH
Confidence 59999999999999 679999999999999999999 9999999999 9999999998887 999999
Q ss_pred --HhCCCCchHHHHHHHHHHcCCCCCCC---------CCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcCCCC---
Q 048228 344 --KQHPRSASSEILIKQLISAGGISNCQ---------DNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTGIEN--- 409 (629)
Q Consensus 344 --~~~~~~~~~~~lv~~Ll~~Gadvn~~---------d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad~--- 409 (629)
+..|+.+ ++++|+++|++++.. +..+.++++++++.+ +++++|.+.+.+.
T Consensus 145 ~~~~~g~~~----~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G------------~~i~vl~~~~~~~~~W 208 (239)
T 1ycs_B 145 EEMEEGYTQ----CSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEG------------DCMTIIHREDEDEIEW 208 (239)
T ss_dssp CSSSTTCCC----HHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSS------------CEEEECCCCTTSCSSE
T ss_pred HHhhhccHH----HHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCC------------CEEEEEEecCCCCCCE
Confidence 8889999 999999999999887 445666665555433 3556666666552
Q ss_pred ---ccccccCCChhhhhhh
Q 048228 410 ---ASDAICDAASVEYSSC 425 (629)
Q Consensus 410 ---~~~d~~g~t~~~~a~~ 425 (629)
...+..|..|..|+..
T Consensus 209 w~~~~~~~~G~~P~~yv~~ 227 (239)
T 1ycs_B 209 WWARLNDKEGYVPRNLLGL 227 (239)
T ss_dssp EEEEETTEEEEEEGGGEEC
T ss_pred EEEEECCcEEEeehHHeeE
Confidence 3446667777776644
No 70
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=1.5e-27 Score=222.16 Aligned_cols=160 Identities=16% Similarity=0.094 Sum_probs=148.4
Q ss_pred CCcHHHHHHHCCCHHHHHHHHHhCCCchhhhhhhHhhhhccccCCCCcHHHHHHhcCcHHHHHHHhhcccccCCCccccc
Q 048228 19 YASPIDFAAANGHYELVKELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSSVARKLLHDCETKKGHNSLIRA 98 (629)
Q Consensus 19 g~TpLh~Aa~~G~~~~v~~LL~~gad~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~~~~d 98 (629)
|.||||+||..|+.++|++|++.|++++.++ ..|.||||+|+..++.+++++|++ +|++++..+
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~------------~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~ 66 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTD------------EEGFTPLMWAAAHGQIAVVEFLLQ----NGADPQLLG 66 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCC------------TTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCC
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCcCCCC------------CCCCCHHHHHHHCCCHHHHHHHHH----cCCCCCCcC
Confidence 6799999999999999999999999987643 679999999999999999999999 899999999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhcc
Q 048228 99 GYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSD 178 (629)
Q Consensus 99 ~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~ 178 (629)
..|.||||+|+..|+.++|++|+++|++ ++..|..|.||||+| +..|+.+++++|+++|++++..+
T Consensus 67 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~~g~~~~~~~------------ 132 (167)
T 3v31_A 67 KGRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYA-VHGNHVKCVKMLLESGADPTIET------------ 132 (167)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHH-HHTTCHHHHHHHHHTTCCTTCCC------------
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCcCCCCCCCHHHHH-HHcCCHHHHHHHHHcCCCCCCcC------------
Confidence 9999999999999999999999999988 588899999999998 77899999999999999987653
Q ss_pred chhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcc
Q 048228 179 SYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVL 215 (629)
Q Consensus 179 ~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~ 215 (629)
..|.||||+|+..|+.+++++|+++++++.
T Consensus 133 -------~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 133 -------DSGYNSMDLAVALGYRSVQQVIESHLLKLL 162 (167)
T ss_dssp -------TTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred -------CCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 447899999999999999999999987664
No 71
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=3.1e-28 Score=226.84 Aligned_cols=158 Identities=19% Similarity=0.193 Sum_probs=148.6
Q ss_pred cchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCCCchHHHHHhcCC
Q 048228 188 MNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFLHMVVAGFR 265 (629)
Q Consensus 188 g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~TpLh~A~~~~~ 265 (629)
|.||||.|+..|+.++|++|++.|++++. .|..|.||||+|+..|+.++ +|++.|++++..|..|.||||+|+.
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~--- 78 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVINH-TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACS--- 78 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH---
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCcCC-CCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH---
Confidence 67999999999999999999999999985 99999999999999999999 7778899999999999999999999
Q ss_pred CCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHh
Q 048228 266 SPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQ 345 (629)
Q Consensus 266 ~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~ 345 (629)
.++.+++++|++.| ++++.+|..|.||||+|+..+ +.+++++|++ +|++++.+|..|.||||+|+.
T Consensus 79 -------~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~ 144 (167)
T 3v31_A 79 -------KGYTDIVKMLLDCG-----VDVNEYDWNGGTPLLYAVHGN-HVKCVKMLLE-SGADPTIETDSGYNSMDLAVA 144 (167)
T ss_dssp -------HTCHHHHHHHHHHT-----CCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHH
T ss_pred -------cCCHHHHHHHHHCC-----CCCCcCCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHH
Confidence 59999999999999 669999999999999999999 9999999999 999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCCCC
Q 048228 346 HPRSASSEILIKQLISAGGISN 367 (629)
Q Consensus 346 ~~~~~~~~~lv~~Ll~~Gadvn 367 (629)
.++.+ ++++|+++++++.
T Consensus 145 ~~~~~----~~~~L~~~~~~~~ 162 (167)
T 3v31_A 145 LGYRS----VQQVIESHLLKLL 162 (167)
T ss_dssp HTCHH----HHHHHHHHHHHHC
T ss_pred cCcHH----HHHHHHHHHHHHH
Confidence 99988 8888888776543
No 72
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=4.1e-28 Score=228.92 Aligned_cols=166 Identities=20% Similarity=0.220 Sum_probs=119.4
Q ss_pred ccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcceecccCCCCccccCCCCCchHHHHHhcCCC
Q 048228 187 MMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVLIAKSPSLISVTNSHGDTFLHMVVAGFRS 266 (629)
Q Consensus 187 ~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~ilL~~~gadin~~d~~g~TpLh~A~~~~~~ 266 (629)
.+.++||.||..|+.++|++|++.+. .+++..|..|+||||+|+.
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~-------------------------------~~~~~~~~~g~t~L~~A~~---- 48 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTE-------------------------------NDLNQGDDHGFSPLHWACR---- 48 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTT-------------------------------SCTTCCCTTSCCHHHHHHH----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCc-------------------------------ccccccCCCCCCHHHHHHH----
Confidence 45677777777777777777777632 3344555566666777776
Q ss_pred CCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhC
Q 048228 267 PGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQH 346 (629)
Q Consensus 267 ~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~ 346 (629)
.++.+++++|++.| ++++.+|..|+||||+|+..+ +.+++++|++ +|+++|.+|..|.||||+|+..
T Consensus 49 ------~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~ 115 (179)
T 3f6q_A 49 ------EGRSAVVEMLIMRG-----ARINVMNRGDDTPLHLAASHG-HRDIVQKLLQ-YKADINAVNEHGNVPLHYACFW 115 (179)
T ss_dssp ------TTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHT
T ss_pred ------cCcHHHHHHHHHcC-----CCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHc
Confidence 46777777777777 557777777777777777777 7777777777 7777777777777777777777
Q ss_pred CCCchHHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcCCCCccccc
Q 048228 347 PRSASSEILIKQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTGIENASDAI 414 (629)
Q Consensus 347 ~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~d~ 414 (629)
++.+ ++++|+++|++++.+|..|+|||++|+... +.+++++|+++|++++..+.
T Consensus 116 ~~~~----~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~----------~~~~~~~L~~~g~~~~~~~~ 169 (179)
T 3f6q_A 116 GQDQ----VAEDLVANGALVSICNKYGEMPVDKAKAPL----------RELLRERAEKMGQNLNRIPY 169 (179)
T ss_dssp TCHH----HHHHHHHTTCCSSBCCTTSCCGGGGSCHHH----------HHHHHHHHHHTTCCCSCBCC
T ss_pred CCHH----HHHHHHHCCCCcchhccCCCCcHHHHHHHH----------HHHHHHHHHHhhcCcccCCc
Confidence 7766 777777777777777777777777777655 57777777777777775543
No 73
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=4.3e-28 Score=228.82 Aligned_cols=140 Identities=22% Similarity=0.187 Sum_probs=110.3
Q ss_pred hHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcceecccCCCCccccCCCCCchHHHH
Q 048228 181 SVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVLIAKSPSLISVTNSHGDTFLHMV 260 (629)
Q Consensus 181 ~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~ilL~~~gadin~~d~~g~TpLh~A 260 (629)
.+..+..|+||||+|+..|+.++|++|+++|++++ .+|..|.||||+|
T Consensus 32 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------------------------------~~~~~g~t~L~~A 79 (179)
T 3f6q_A 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN--------------------------------VMNRGDDTPLHLA 79 (179)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--------------------------------CCCTTCCCHHHHH
T ss_pred ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC--------------------------------CcCCCCCCHHHHH
Confidence 34456667777777777777777777777766655 4445566777777
Q ss_pred HhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHH
Q 048228 261 VAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPL 340 (629)
Q Consensus 261 ~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpL 340 (629)
+. .++.+++++|++.| ++++.+|..|+||||+|+..+ +.+++++|++ +|++++.+|..|.|||
T Consensus 80 ~~----------~~~~~~v~~Ll~~g-----~~~~~~d~~g~t~L~~A~~~~-~~~~v~~Ll~-~ga~~~~~~~~g~tpl 142 (179)
T 3f6q_A 80 AS----------HGHRDIVQKLLQYK-----ADINAVNEHGNVPLHYACFWG-QDQVAEDLVA-NGALVSICNKYGEMPV 142 (179)
T ss_dssp HH----------TTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHH-TTCCSSBCCTTSCCGG
T ss_pred HH----------cCCHHHHHHHHHcC-----CCCCccCCCCCCHHHHHHHcC-CHHHHHHHHH-CCCCcchhccCCCCcH
Confidence 77 47888888888888 568888888889999998888 8889999998 8889888888899999
Q ss_pred HHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCC
Q 048228 341 DLLKQHPRSASSEILIKQLISAGGISNCQDNVA 373 (629)
Q Consensus 341 h~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G 373 (629)
|+|+..++.+ ++++|+++|++++..+..+
T Consensus 143 ~~A~~~~~~~----~~~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 143 DKAKAPLREL----LRERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp GGSCHHHHHH----HHHHHHHTTCCCSCBCCCC
T ss_pred HHHHHHHHHH----HHHHHHHhhcCcccCCccc
Confidence 9888877655 8888888898888776654
No 74
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=1.1e-28 Score=244.42 Aligned_cols=208 Identities=15% Similarity=0.024 Sum_probs=150.5
Q ss_pred CCCcHHHHHHHCCCHHHHHHHHHhCCCchhhhhhhHhhhhccccCCCCcHHHHHHhcCcHHHHHHHhhcccccCCCcccc
Q 048228 18 WYASPIDFAAANGHYELVKELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSSVARKLLHDCETKKGHNSLIR 97 (629)
Q Consensus 18 ~g~TpLh~Aa~~G~~~~v~~LL~~gad~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~~~~ 97 (629)
.|.||||.|+..|+.++++.||++|++++.. ..+.||||.|+..|+.+++++|++ .|++++.+
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-------------~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~ 66 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-------------PLPLALLLDSSLEGEFDLVQRIIY----EVDDPSLP 66 (239)
T ss_dssp ----------------------------------------------CHHHHHHHHHHTCHHHHHHHTS----TTSSCCCC
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCcccC-------------chhhHHHHHHHHcCCHHHHHHHHH----cCCCCCCc
Confidence 4789999999999999999999999999743 357899999999999999999999 89999999
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhc
Q 048228 98 AGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLS 177 (629)
Q Consensus 98 d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~ 177 (629)
|..|.||||+||..|+.++|++|+++|++ ++.+|..|.||||+| +..|+.+++++|+++|++++..+..
T Consensus 67 d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A-~~~~~~~~v~~Ll~~ga~~~~~~~~--------- 135 (239)
T 1ycs_B 67 NDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCA-ASCNNVQVCKFLVESGAAVFAMTYS--------- 135 (239)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHH-HHTTCHHHHHHHHHTTCCTTCCCSS---------
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHH-HHcCCHHHHHHHHHcCCCcceecCC---------
Confidence 99999999999999999999999999988 688999999999998 7889999999999999999866533
Q ss_pred cchhHHhhhccchHHHHH--HhcCCHHHHHHHHhCCCCccc--------ccCCCCCcHHHHHHhcCCcceecccCCCC--
Q 048228 178 DSYSVFKWEMMNRAVHAV--ARGGNLDILRQLLGDCENVLA--------YRDVQGSTILHSASGRGQVEVLIAKSPSL-- 245 (629)
Q Consensus 178 ~~~~~~~d~~g~t~Lh~A--~~~g~~~iv~~Ll~~gad~~~--------~~d~~g~TpLh~A~~~g~~~ilL~~~gad-- 245 (629)
.++||||+| +..|+.+++++|+++|++++. ..+..+.+++++++..|..-.++.+.+.+
T Consensus 136 ---------~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~i~vl~~~~~~~~ 206 (239)
T 1ycs_B 136 ---------DMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEI 206 (239)
T ss_dssp ---------SCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCS
T ss_pred ---------CCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCCEEEEEEecCCCCC
Confidence 134999999 888999999999999998764 12677899999998888754456555544
Q ss_pred ----ccccCCCCCchHHHHHh
Q 048228 246 ----ISVTNSHGDTFLHMVVA 262 (629)
Q Consensus 246 ----in~~d~~g~TpLh~A~~ 262 (629)
....+..|.+|.+|...
T Consensus 207 ~Ww~~~~~~~~G~~P~~yv~~ 227 (239)
T 1ycs_B 207 EWWWARLNDKEGYVPRNLLGL 227 (239)
T ss_dssp SEEEEEETTEEEEEEGGGEEC
T ss_pred CEEEEEECCcEEEeehHHeeE
Confidence 24556778899887654
No 75
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=3.2e-27 Score=216.79 Aligned_cols=148 Identities=23% Similarity=0.280 Sum_probs=138.0
Q ss_pred chHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCCCchHHHHHhcCCC
Q 048228 189 NRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFLHMVVAGFRS 266 (629)
Q Consensus 189 ~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~TpLh~A~~~~~~ 266 (629)
.++||.|+..|+.++|++|+++|++++ .+..|.||||+|+..|+.++ +|++.|++++.+|..|+||||+|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~---- 76 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAAS---- 76 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHH----
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH----
Confidence 589999999999999999999999886 68899999999999999998 7788999999999999999999999
Q ss_pred CCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhC
Q 048228 267 PGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQH 346 (629)
Q Consensus 267 ~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~ 346 (629)
.++.+++++|++.| ++++.+|..|+||||+|+..+ +.+++++|++ +|++++.+|..|.||||+|+..
T Consensus 77 ------~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~ 143 (153)
T 1awc_B 77 ------EGHANIVEVLLKHG-----ADVNAKDMLKMTALHWATEHN-HQEVVELLIK-YGADVHTQSKFCKTAFDISIDN 143 (153)
T ss_dssp ------HTCHHHHHHHHTTT-----CCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHT
T ss_pred ------cChHHHHHHHHHcC-----CCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCccccCCCCCCHHHHHHHc
Confidence 48999999999998 669999999999999999999 9999999999 8999999999999999999999
Q ss_pred CCCchHHHHHHHH
Q 048228 347 PRSASSEILIKQL 359 (629)
Q Consensus 347 ~~~~~~~~lv~~L 359 (629)
++.+ ++++|
T Consensus 144 ~~~~----i~~~L 152 (153)
T 1awc_B 144 GNED----LAEIL 152 (153)
T ss_dssp TCHH----HHHHH
T ss_pred CCHH----HHHHh
Confidence 9988 67665
No 76
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=9.2e-28 Score=223.19 Aligned_cols=161 Identities=16% Similarity=0.183 Sum_probs=128.8
Q ss_pred hhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcceecccCCCCccccCCCCCchHHHHHhc
Q 048228 184 KWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVLIAKSPSLISVTNSHGDTFLHMVVAG 263 (629)
Q Consensus 184 ~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~ilL~~~gadin~~d~~g~TpLh~A~~~ 263 (629)
.+..|.|+||.|+..|+.++|++|++.+ +.+++..+..|.||||+|+.
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~-------------------------------~~~~~~~~~~g~t~L~~A~~- 51 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQ-------------------------------SVNCRDIEGRQSTPLHFAAG- 51 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTT-------------------------------TTTCCCTTTTCCCHHHHHHH-
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcC-------------------------------CCCccccccCCCCHHHHHHH-
Confidence 4556777788888888888887777642 23344556667788888888
Q ss_pred CCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHH
Q 048228 264 FRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLL 343 (629)
Q Consensus 264 ~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A 343 (629)
.++.+++++|++.| ++++.+|..|+||||+|+..+ +.+++++|++ .|+++|.+|..|+||||+|
T Consensus 52 ---------~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A 115 (165)
T 3twr_A 52 ---------YNRVSVVEYLLQHG-----ADVHAKDKGGLVPLHNACSYG-HYEVAELLVK-HGAVVNVADLWKFTPLHEA 115 (165)
T ss_dssp ---------TTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCTTCCCHHHHH
T ss_pred ---------cChHHHHHHHHhcC-----CCCCccCCCCCCHHHHHHHcC-cHHHHHHHHh-CCCCCCCcCCCCCCHHHHH
Confidence 48889999999888 568888888999999999888 8999999999 8999999998999999999
Q ss_pred HhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcCC
Q 048228 344 KQHPRSASSEILIKQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTGI 407 (629)
Q Consensus 344 ~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Ga 407 (629)
+..++.+ ++++|+++|++++.+|..|+|||++|.. + +.+++++|+++||
T Consensus 116 ~~~~~~~----~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~----------~~~i~~~L~~~gA 164 (165)
T 3twr_A 116 AAKGKYE----ICKLLLQHGADPTKKNRDGNTPLDLVKD-G----------DTDIQDLLRGDAA 164 (165)
T ss_dssp HHTTCHH----HHHHHHHTTCCTTCCCTTSCCTGGGSCT-T----------CHHHHHHHHTC--
T ss_pred HHcCCHH----HHHHHHHcCCCCcccCCCCCChhHhHhc-C----------ChHHHHHHhhccc
Confidence 9998877 8888888999999999999999988765 3 4789999988886
No 77
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=3.3e-26 Score=210.01 Aligned_cols=150 Identities=21% Similarity=0.199 Sum_probs=139.5
Q ss_pred CcHHHHHHHCCCHHHHHHHHHhCCCchhhhhhhHhhhhccccCCCCcHHHHHHhcCcHHHHHHHhhcccccCCCcccccC
Q 048228 20 ASPIDFAAANGHYELVKELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSSVARKLLHDCETKKGHNSLIRAG 99 (629)
Q Consensus 20 ~TpLh~Aa~~G~~~~v~~LL~~gad~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~~~~d~ 99 (629)
.||||.||..|+.++|++|++.|++++ ....|.||||+|+..++.+++++|++ .|++++.++.
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-------------~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~ 65 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-------------TDWLGTSPLHLAAQYGHFSTTEVLLR----AGVSRDARTK 65 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-------------CCTTCCCHHHHHHHHTCHHHHHHHHT----TTCCTTCCCT
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-------------cCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCCCC
Confidence 489999999999999999999999875 23679999999999999999999999 9999999999
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhccc
Q 048228 100 YGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLSDS 179 (629)
Q Consensus 100 ~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~~~ 179 (629)
.|.||||+|+..|+.++|++|+++|++ ++..|..|.||||+| +..|+.+++++|+++|++++..+
T Consensus 66 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~~ga~~~~~~------------- 130 (153)
T 1awc_B 66 VDRTPLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWA-TEHNHQEVVELLIKYGADVHTQS------------- 130 (153)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHH-HHTTCHHHHHHHHHTTCCTTCCC-------------
T ss_pred CCCCHHHHHHHcChHHHHHHHHHcCCC-CCCCCCCCCCHHHHH-HHcCCHHHHHHHHHcCCCccccC-------------
Confidence 999999999999999999999999988 588899999999998 78899999999999999988553
Q ss_pred hhHHhhhccchHHHHHHhcCCHHHHHHH
Q 048228 180 YSVFKWEMMNRAVHAVARGGNLDILRQL 207 (629)
Q Consensus 180 ~~~~~d~~g~t~Lh~A~~~g~~~iv~~L 207 (629)
..|.||||+|+..|+.+++++|
T Consensus 131 ------~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 131 ------KFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp ------TTSCCHHHHHHHTTCHHHHHHH
T ss_pred ------CCCCCHHHHHHHcCCHHHHHHh
Confidence 4578999999999999999987
No 78
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=2e-27 Score=220.91 Aligned_cols=128 Identities=21% Similarity=0.247 Sum_probs=98.3
Q ss_pred HhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcceecccCCCCccccCCCCCchHHHHHh
Q 048228 183 FKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVLIAKSPSLISVTNSHGDTFLHMVVA 262 (629)
Q Consensus 183 ~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~ilL~~~gadin~~d~~g~TpLh~A~~ 262 (629)
..+..|.||||+|+..|+.++|++|+++|++++ .+|..|+||||+|+.
T Consensus 37 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------------------------------~~~~~g~t~L~~A~~ 84 (165)
T 3twr_A 37 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH--------------------------------AKDKGGLVPLHNACS 84 (165)
T ss_dssp CTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--------------------------------CCCTTSCCHHHHHHH
T ss_pred ccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC--------------------------------ccCCCCCCHHHHHHH
Confidence 345566788888888888888888887776655 344556677777777
Q ss_pred cCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHH
Q 048228 263 GFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDL 342 (629)
Q Consensus 263 ~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~ 342 (629)
.++.+++++|++.| ++++.+|..|+||||+|+..+ +.+++++|++ +|++++.+|..|.||||+
T Consensus 85 ----------~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~ 147 (165)
T 3twr_A 85 ----------YGHYEVAELLVKHG-----AVVNVADLWKFTPLHEAAAKG-KYEICKLLLQ-HGADPTKKNRDGNTPLDL 147 (165)
T ss_dssp ----------TTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCTTSCCTGGG
T ss_pred ----------cCcHHHHHHHHhCC-----CCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCCcccCCCCCChhHh
Confidence 47788888888888 568888888888888888888 8888888888 888888888888888888
Q ss_pred HHhCCCCchHHHHHHHHHHcCC
Q 048228 343 LKQHPRSASSEILIKQLISAGG 364 (629)
Q Consensus 343 A~~~~~~~~~~~lv~~Ll~~Ga 364 (629)
|+. ++.+ ++++|+++||
T Consensus 148 a~~-~~~~----i~~~L~~~gA 164 (165)
T 3twr_A 148 VKD-GDTD----IQDLLRGDAA 164 (165)
T ss_dssp SCT-TCHH----HHHHHHTC--
T ss_pred Hhc-CChH----HHHHHhhccc
Confidence 766 6655 8888888776
No 79
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=1.7e-26 Score=212.36 Aligned_cols=152 Identities=18% Similarity=0.213 Sum_probs=89.9
Q ss_pred cchHHHHHHhcCCHHHHHHHHhC-CCCcccccCCCCCcHHHHHHhcCCcceecccCCCCccccCCCCCchHHHHHhcCCC
Q 048228 188 MNRAVHAVARGGNLDILRQLLGD-CENVLAYRDVQGSTILHSASGRGQVEVLIAKSPSLISVTNSHGDTFLHMVVAGFRS 266 (629)
Q Consensus 188 g~t~Lh~A~~~g~~~iv~~Ll~~-gad~~~~~d~~g~TpLh~A~~~g~~~ilL~~~gadin~~d~~g~TpLh~A~~~~~~ 266 (629)
+.|+||.|+..|+.+++++|++. +.+++. .+..|.||||+ +..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~-~~~---------------------------------- 45 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDA-LNRFGKTALQV-MMF---------------------------------- 45 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTC-CCTTSCCHHHH-SCT----------------------------------
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccc-cCCCCCcHHHH-HHc----------------------------------
Confidence 46889999999999999988887 225542 44444444444 444
Q ss_pred CCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhC
Q 048228 267 PGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQH 346 (629)
Q Consensus 267 ~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~ 346 (629)
++.+++++|++.| ++++.+|..|.||||+|+..+ +.+++++|++ +|+++|.+|..|+||||+|+..
T Consensus 46 -------~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~ 111 (156)
T 1bd8_A 46 -------GSTAIALELLKQG-----ASPNVQDTSGTSPVHDAARTG-FLDTLKVLVE-HGADVNVPDGTGALPIHLAVQE 111 (156)
T ss_dssp -------TCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHH
T ss_pred -------CCHHHHHHHHHCC-----CCCCCcCCCCCCHHHHHHHcC-cHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHh
Confidence 5555555555555 335555555555555555555 5555555555 5555555555555555555555
Q ss_pred CCCchHHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHH
Q 048228 347 PRSASSEILIKQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLY 404 (629)
Q Consensus 347 ~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~ 404 (629)
++.+ ++++|+++ ++++.+|..|+|||++|+..+ +.+++++|++
T Consensus 112 ~~~~----~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~----------~~~~v~~Ll~ 154 (156)
T 1bd8_A 112 GHTA----VVSFLAAE-SDLHRRDARGLTPLELALQRG----------AQDLVDILQG 154 (156)
T ss_dssp TCHH----HHHHHHTT-SCTTCCCTTSCCHHHHHHHSC----------CHHHHHHHHT
T ss_pred ChHH----HHHHHHhc-cCCCCcCCCCCCHHHHHHHcC----------cHHHHHHHHh
Confidence 5544 55555555 555555555555555555544 3555555554
No 80
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=3.1e-26 Score=210.66 Aligned_cols=127 Identities=24% Similarity=0.290 Sum_probs=94.5
Q ss_pred hhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcceecccCCCCccccCCCCCchHHH
Q 048228 180 YSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVLIAKSPSLISVTNSHGDTFLHM 259 (629)
Q Consensus 180 ~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~ilL~~~gadin~~d~~g~TpLh~ 259 (629)
+.+..+..|+||||+ +..|+.+++++|+++|++++. .|. .|.||||+
T Consensus 28 ~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~-~~~-------------------------------~g~t~L~~ 74 (156)
T 1bd8_A 28 HPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNV-QDT-------------------------------SGTSPVHD 74 (156)
T ss_dssp CTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTC-CCT-------------------------------TSCCHHHH
T ss_pred CccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCC-cCC-------------------------------CCCCHHHH
Confidence 566678889999999 999999999999999988864 444 45555666
Q ss_pred HHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcH
Q 048228 260 VVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTP 339 (629)
Q Consensus 260 A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~Tp 339 (629)
|+. .++.+++++|++.| ++++.+|..|+||||+|+..+ +.+++++|++ . ++++.+|..|.||
T Consensus 75 A~~----------~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~-~~~~~~~~~g~t~ 136 (156)
T 1bd8_A 75 AAR----------TGFLDTLKVLVEHG-----ADVNVPDGTGALPIHLAVQEG-HTAVVSFLAA-E-SDLHRRDARGLTP 136 (156)
T ss_dssp HHH----------TTCHHHHHHHHHTT-----CCSCCCCTTSCCHHHHHHHHT-CHHHHHHHHT-T-SCTTCCCTTSCCH
T ss_pred HHH----------cCcHHHHHHHHHcC-----CCCCCcCCCCCcHHHHHHHhC-hHHHHHHHHh-c-cCCCCcCCCCCCH
Confidence 665 36677777777777 457777777777777777777 7777777777 5 7777777777777
Q ss_pred HHHHHhCCCCchHHHHHHHHHH
Q 048228 340 LDLLKQHPRSASSEILIKQLIS 361 (629)
Q Consensus 340 Lh~A~~~~~~~~~~~lv~~Ll~ 361 (629)
||+|+..++.+ ++++|++
T Consensus 137 l~~A~~~~~~~----~v~~Ll~ 154 (156)
T 1bd8_A 137 LELALQRGAQD----LVDILQG 154 (156)
T ss_dssp HHHHHHSCCHH----HHHHHHT
T ss_pred HHHHHHcCcHH----HHHHHHh
Confidence 77777777766 6666654
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=1.6e-26 Score=207.76 Aligned_cols=134 Identities=17% Similarity=0.116 Sum_probs=128.3
Q ss_pred CCCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHh
Q 048228 243 PSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLM 322 (629)
Q Consensus 243 gadin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll 322 (629)
+++++..|..|.||||+|+. .++.+++++|++.| ++++.+|..|+||||+|+. + +.+++++|+
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~----------~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~-~-~~~~v~~Ll 64 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAA----------RGQVETVRQLLEAG-----ADPNALNRFGRRPIQVMMM-G-SAQVAELLL 64 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHH----------TTCHHHHHHHHHTT-----CCTTCCCTTCCTTTTTSTT-S-CHHHHHHHH
T ss_pred CCCccCCCCCCccHHHHHHH----------cCCHHHHHHHHHcC-----CCcCCcCCCCCCHHHHHHc-C-CHHHHHHHH
Confidence 67899999999999999999 59999999999999 6699999999999999999 8 999999999
Q ss_pred cCCCCCcccCCCC-CCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHH
Q 048228 323 TVPSINLNIQDGE-GMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEI 401 (629)
Q Consensus 323 ~~~gadvn~~d~~-G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~ 401 (629)
+ +|+++|.+|.. |.||||+|+..++.+ ++++|+++|++++.+|..|+||||+|+..+ +.+++++
T Consensus 65 ~-~g~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~----------~~~~~~~ 129 (136)
T 1d9s_A 65 L-HGAEPNCADPATLTRPVHDAAREGFLD----TLVVLHRAGARLDVCDAWGRLPVDLAEEQG----------HRDIARY 129 (136)
T ss_dssp H-HTCCSSCCBTTTTBCHHHHHHHHTCHH----HHHHHHHTCCCCCCCSSSSSCHHHHHHHHT----------CHHHHHH
T ss_pred H-CCCCCCCcCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCccCCCCCCHHHHHHHcC----------CHHHHHH
Confidence 9 99999999999 999999999999988 999999999999999999999999999987 6999999
Q ss_pred HHHcCCC
Q 048228 402 FLYTGIE 408 (629)
Q Consensus 402 LL~~Gad 408 (629)
|+++|||
T Consensus 130 Ll~~Gad 136 (136)
T 1d9s_A 130 LHAATGD 136 (136)
T ss_dssp HHHHHCC
T ss_pred HHHcCCC
Confidence 9999996
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=5.1e-26 Score=209.60 Aligned_cols=144 Identities=15% Similarity=0.127 Sum_probs=118.5
Q ss_pred ccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCC
Q 048228 246 ISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVP 325 (629)
Q Consensus 246 in~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~ 325 (629)
.+..+..|.||||+|+. .++.+++++|++.| ++++.+|..|+||||+|+ .+ +.+++++|++ .
T Consensus 5 ~~~~~~~~~t~L~~A~~----------~g~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~-~~-~~~~v~~Ll~-~ 66 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAA----------RGRVEEVRALLEAG-----ANPNAPNSYGRRPIQVMM-MG-SARVAELLLL-H 66 (156)
T ss_dssp -----CCSTTHHHHHHH----------HTCHHHHHHHHTTT-----CCTTCCCSSSCCTTTSSC-TT-CHHHHHHHHT-T
T ss_pred ccCCCccchHHHHHHHH----------cCCHHHHHHHHHcC-----CCCCCCCCCCCCHHHHHH-cC-CHHHHHHHHH-c
Confidence 34567889999999999 59999999999999 669999999999999985 77 9999999999 9
Q ss_pred CCCcccCCCCCCc-HHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHH
Q 048228 326 SINLNIQDGEGMT-PLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLY 404 (629)
Q Consensus 326 gadvn~~d~~G~T-pLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~ 404 (629)
|+++|.+|..|.| |||+|+..++.+ ++++|+++|++++.+|..|+||||+|+..+ +.+++++|++
T Consensus 67 g~~~~~~d~~g~ttpL~~A~~~~~~~----~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~----------~~~~v~~Ll~ 132 (156)
T 1bi7_B 67 GAEPNCADPATLTRPVHDAAREGFLD----TLVVLHRAGARLDVRDAWGRLPVDLAEELG----------HRDVARYLRA 132 (156)
T ss_dssp TCCCCCCCTTTCCCHHHHHHHHTCHH----HHHHHHHHTCCSSCCCTTCCCHHHHHHHHT----------CHHHHHHHSS
T ss_pred CCCCCCcCCCCCcHHHHHHHHCCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHhC----------HHHHHHHHHH
Confidence 9999999999999 999999999988 999999999999999999999999999987 6999999999
Q ss_pred cCCCCccccccCCChhh
Q 048228 405 TGIENASDAICDAASVE 421 (629)
Q Consensus 405 ~Gad~~~~d~~g~t~~~ 421 (629)
+|++++..+..|.|+.+
T Consensus 133 ~ga~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 133 AAGGTRGSNHARIDAAE 149 (156)
T ss_dssp CC---------------
T ss_pred cCCCCCccCcCcCcccc
Confidence 99999999999998876
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=2.7e-26 Score=218.05 Aligned_cols=170 Identities=12% Similarity=0.032 Sum_probs=125.9
Q ss_pred cchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcceecccCCCCccccCCCCCchHHHHHhcCCCC
Q 048228 188 MNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVLIAKSPSLISVTNSHGDTFLHMVVAGFRSP 267 (629)
Q Consensus 188 g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~ilL~~~gadin~~d~~g~TpLh~A~~~~~~~ 267 (629)
+.++|+.|++.|+.+.++.++..+.+.. .+.. |+||||+|+..+..
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~--~~~~-------------------------------g~T~Lh~A~~~~~~- 51 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYEDK--ESVL-------------------------------KSNILYDVLRNNND- 51 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSCH--HHHH-------------------------------TTTHHHHHTTCSCH-
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcccc--cccC-------------------------------CCCHHHHHHHcCCc-
Confidence 4578888888888888888877654321 1133 45555555542100
Q ss_pred CccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCc------HHHHHHHhcCCCCCcccCCCCCC-cHH
Q 048228 268 GFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQ------CNLVELLMTVPSINLNIQDGEGM-TPL 340 (629)
Q Consensus 268 ~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~------~~iv~~Ll~~~gadvn~~d~~G~-TpL 340 (629)
..+.+++++|++.| +++|.+|..|+||||+|+..+ + .+++++||+ +|+|+|.+|..|+ |||
T Consensus 52 -----~~~~~iv~~Ll~~G-----advn~~d~~g~TpLh~a~~~~-~~~~~~~~~iv~~Ll~-~Gadin~~d~~g~ttpL 119 (186)
T 3t8k_A 52 -----EARYKISMFLINKG-----ADIKSRTKEGTTLFFPLFQGG-GNDITGTTELCKIFLE-KGADITALYKPYKIVVF 119 (186)
T ss_dssp -----HHHHHHHHHHHHTT-----CCSSCCCTTCCCTHHHHHHHC-TTCHHHHHHHHHHHHH-TTCCSSSCBGGGTBCTT
T ss_pred -----chHHHHHHHHHHCC-----CCCCCCCCCCCcHHHHHHHcC-CcchhhHHHHHHHHHH-CCCCCCccCCCcCchHH
Confidence 12457888888888 668888888888888888877 5 578999999 8999999999998 899
Q ss_pred HHHHhCCCCc-hHHHHHHHHHH-cCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcCCCCcccc
Q 048228 341 DLLKQHPRSA-SSEILIKQLIS-AGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTGIENASDA 413 (629)
Q Consensus 341 h~A~~~~~~~-~~~~lv~~Ll~-~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~d 413 (629)
|+|+..+..+ ....++++|++ +|+|+|.+|..|+||||+|++.+ +.++|++|++...+.+.++
T Consensus 120 h~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~----------~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ----------KPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp GGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTT----------CHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcC----------CHHHHHHHHHHHHHHhccc
Confidence 9998865542 23458888888 89999999999999999998876 5888998888766555544
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=7.1e-26 Score=215.13 Aligned_cols=141 Identities=16% Similarity=0.190 Sum_probs=117.0
Q ss_pred hhccchHHHHHHhcCCH----HHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcceecccCCCCccccCCCCCchHHHH
Q 048228 185 WEMMNRAVHAVARGGNL----DILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVLIAKSPSLISVTNSHGDTFLHMV 260 (629)
Q Consensus 185 d~~g~t~Lh~A~~~g~~----~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~ilL~~~gadin~~d~~g~TpLh~A 260 (629)
+..|+||||+|+..|+. +++++||++|++++. +|..|+||||+|+..++.++
T Consensus 35 ~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~-~d~~g~TpLh~a~~~~~~~~----------------------- 90 (186)
T 3t8k_A 35 SVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS-RTKEGTTLFFPLFQGGGNDI----------------------- 90 (186)
T ss_dssp HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC-CCTTCCCTHHHHHHHCTTCH-----------------------
T ss_pred ccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcCCcch-----------------------
Confidence 37799999999999985 599999999999996 88999999999888765321
Q ss_pred HhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCc-hHHHHHHHcCC----cHHHHHHHhcCCCCCcccCCCC
Q 048228 261 VAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGR-TALHLAVSENI----QCNLVELLMTVPSINLNIQDGE 335 (629)
Q Consensus 261 ~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~-TpLh~A~~~~~----~~~iv~~Ll~~~gadvn~~d~~ 335 (629)
....+++++|+++| +++|.+|..|+ ||||+|+..+. +.+++++|++.+|+|+|.+|..
T Consensus 91 ------------~~~~~iv~~Ll~~G-----adin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~ 153 (186)
T 3t8k_A 91 ------------TGTTELCKIFLEKG-----ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKW 153 (186)
T ss_dssp ------------HHHHHHHHHHHHTT-----CCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTT
T ss_pred ------------hhHHHHHHHHHHCC-----CCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCC
Confidence 14578999999999 77999999999 99999998431 4579999998679999999999
Q ss_pred CCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCC
Q 048228 336 GMTPLDLLKQHPRSASSEILIKQLISAGGISNCQD 370 (629)
Q Consensus 336 G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d 370 (629)
|+||||+|++.++.+ ++++|++...+.+.++
T Consensus 154 G~TpL~~A~~~~~~~----~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 154 GLTALEFVKRCQKPI----ALKMMEDYIKKYNLKE 184 (186)
T ss_dssp SCCHHHHHHTTTCHH----HHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHcCCHH----HHHHHHHHHHHHhccc
Confidence 999999999999988 6666666655555554
No 85
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=2.9e-25 Score=204.47 Aligned_cols=143 Identities=20% Similarity=0.202 Sum_probs=95.8
Q ss_pred HhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcceecccCCCCccccCCCCCchHHHHHh
Q 048228 183 FKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVLIAKSPSLISVTNSHGDTFLHMVVA 262 (629)
Q Consensus 183 ~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~ilL~~~gadin~~d~~g~TpLh~A~~ 262 (629)
..++.|.||||+|+..|+.++|++|+++|++++ ..|..|+||||+|+.
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~--------------------------------~~~~~g~t~L~~A~~ 54 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGANPN--------------------------------APNSYGRRPIQVMMM 54 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTT--------------------------------CCCSSSCCTTTSSCT
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCC--------------------------------CCCCCCCCHHHHHHc
Confidence 345667777777777777777777777766665 345566677777632
Q ss_pred cCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCch-HHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHH
Q 048228 263 GFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRT-ALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLD 341 (629)
Q Consensus 263 ~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~T-pLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh 341 (629)
++.+++++|++.| ++++.+|..|+| |||+|+..+ +.+++++|++ +|+++|.+|..|+||||
T Consensus 55 -----------~~~~~v~~Ll~~g-----~~~~~~d~~g~ttpL~~A~~~~-~~~~v~~Ll~-~ga~~~~~d~~g~tpl~ 116 (156)
T 1bi7_B 55 -----------GSARVAELLLLHG-----AEPNCADPATLTRPVHDAAREG-FLDTLVVLHR-AGARLDVRDAWGRLPVD 116 (156)
T ss_dssp -----------TCHHHHHHHHTTT-----CCCCCCCTTTCCCHHHHHHHHT-CHHHHHHHHH-HTCCSSCCCTTCCCHHH
T ss_pred -----------CCHHHHHHHHHcC-----CCCCCcCCCCCcHHHHHHHHCC-CHHHHHHHHH-cCCCCcccCCCCCCHHH
Confidence 7788888888887 558888888887 888888888 8888888888 78888888888888888
Q ss_pred HHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHHH
Q 048228 342 LLKQHPRSASSEILIKQLISAGGISNCQDNVARNAIAC 379 (629)
Q Consensus 342 ~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~ 379 (629)
+|+..++.+ ++++|+++|++++.+|..|.||.+.
T Consensus 117 ~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~t~~~~ 150 (156)
T 1bi7_B 117 LAEELGHRD----VARYLRAAAGGTRGSNHARIDAAEG 150 (156)
T ss_dssp HHHHHTCHH----HHHHHSSCC----------------
T ss_pred HHHHhCHHH----HHHHHHHcCCCCCccCcCcCccccc
Confidence 888888776 7888888888888888888887653
No 86
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=5.7e-24 Score=191.05 Aligned_cols=133 Identities=15% Similarity=0.042 Sum_probs=117.4
Q ss_pred cccccCCCCCCCcHHHHHHHCCCHHHHHHHHHhCCCchhhhhhhHhhhhccccCCCCcHHHHHHhcCcHHHHHHHhhccc
Q 048228 9 RWESTGDQWWYASPIDFAAANGHYELVKELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSSVARKLLHDCET 88 (629)
Q Consensus 9 ~w~~~~d~~~g~TpLh~Aa~~G~~~~v~~LL~~gad~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~~~~~i~~lL~~~~~ 88 (629)
.|......+.+.||||+||..|+.++|++|+++|++++.++ ..|.||||+|+..++.+++++|++
T Consensus 4 ~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~------------~~g~t~L~~A~~~~~~~~v~~Ll~--- 68 (136)
T 2jab_A 4 SHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKD------------EYGLTPLYLATAHGHLEIVEVLLK--- 68 (136)
T ss_dssp --------CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC------------TTSCCHHHHHHHHTCHHHHHHHHH---
T ss_pred CCCCCcccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcC------------CCCCCHHHHHHHcCCHHHHHHHHH---
Confidence 34555556678899999999999999999999999998653 679999999999999999999999
Q ss_pred ccCCCcccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcC
Q 048228 89 KKGHNSLIRAGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNA 159 (629)
Q Consensus 89 ~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~G 159 (629)
+|++++.+|..|.||||+|+..|+.++|++|+++|++ ++..|..|.|||++| +..|+.+++++|+++|
T Consensus 69 -~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A-~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 69 -NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDIS-IGNGNEDLAEILQKLN 136 (136)
T ss_dssp -TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH-HHTTCHHHHHHHHHC-
T ss_pred -cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcCcCCCCCCHHHHH-HHCCCHHHHHHHHHcC
Confidence 8999999999999999999999999999999999988 588899999999998 7889999999999986
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=8.2e-24 Score=186.34 Aligned_cols=126 Identities=26% Similarity=0.453 Sum_probs=120.4
Q ss_pred CCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCccc
Q 048228 252 HGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNI 331 (629)
Q Consensus 252 ~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~ 331 (629)
+|+||||+|+. .++.+++++|++.+ ++++..+..|.||||+|+..+ +.+++++|++ .|++++.
T Consensus 1 ~g~t~L~~A~~----------~~~~~~v~~Ll~~~-----~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~-~g~~~~~ 63 (126)
T 1n0r_A 1 NGRTPLHLAAR----------NGHLEVVKLLLEAG-----ADVNAKDKNGRTPLHLAARNG-HLEVVKLLLE-AGADVNA 63 (126)
T ss_dssp CCCCHHHHHHH----------HTCHHHHHHHHHHT-----CCTTCCCTTSCCHHHHHHHHT-CHHHHHHHHH-TTCCTTC
T ss_pred CCccHHHHHHH----------cCcHHHHHHHHHcC-----CCCCCcCCCCCcHHHHHHHcC-cHHHHHHHHH-cCCCCcc
Confidence 58999999999 59999999999998 569999999999999999999 9999999999 9999999
Q ss_pred CCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcCCC
Q 048228 332 QDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTGIE 408 (629)
Q Consensus 332 ~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad 408 (629)
+|..|.||||+|+..++.+ ++++|+++|++++.+|..|.|||++|+..+ +.+++++|+++|||
T Consensus 64 ~~~~g~t~l~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~----------~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 64 KDKNGRTPLHLAARNGHLE----VVKLLLEAGADVNAKDKNGRTPLHLAARNG----------HLEVVKLLLEAGAY 126 (126)
T ss_dssp CCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT----------CHHHHHHHHHHTCC
T ss_pred cCCCCCcHHHHHHHcChHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHcC----------cHHHHHHHHHcCCC
Confidence 9999999999999999988 999999999999999999999999999987 69999999999997
No 88
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.90 E-value=1e-23 Score=189.38 Aligned_cols=127 Identities=16% Similarity=0.029 Sum_probs=118.8
Q ss_pred CCCCCcHHHHHHHCCCHHHHHHHHHhCCCchhhhhhhHhhhhccccCCCCcHHHHHHhcCcHHHHHHHhhcccccCCCcc
Q 048228 16 QWWYASPIDFAAANGHYELVKELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSSVARKLLHDCETKKGHNSL 95 (629)
Q Consensus 16 ~~~g~TpLh~Aa~~G~~~~v~~LL~~gad~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~~ 95 (629)
+..|.||||+||..|+.++|++|+++|++++.++ ..|.||||+|+. ++.+++++|++ +|++++
T Consensus 9 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~------------~~g~t~L~~A~~-~~~~~v~~Ll~----~g~~~~ 71 (136)
T 1d9s_A 9 GGSSDAGLATAAARGQVETVRQLLEAGADPNALN------------RFGRRPIQVMMM-GSAQVAELLLL----HGAEPN 71 (136)
T ss_dssp CCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCC------------TTCCTTTTTSTT-SCHHHHHHHHH----HTCCSS
T ss_pred CCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcC------------CCCCCHHHHHHc-CCHHHHHHHHH----CCCCCC
Confidence 3457899999999999999999999999998653 679999999999 99999999999 899999
Q ss_pred cccCC-CChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCC
Q 048228 96 IRAGY-GGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVA 161 (629)
Q Consensus 96 ~~d~~-g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~ 161 (629)
.+|.. |.||||+|+..|+.++|++|+++|++ ++.+|..|.||||+| +..++.+++++|+++|+|
T Consensus 72 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A-~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 72 CADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLA-EEQGHRDIARYLHAATGD 136 (136)
T ss_dssp CCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHH-HHHTCHHHHHHHHHHHCC
T ss_pred CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHH-HHcCCHHHHHHHHHcCCC
Confidence 99999 99999999999999999999999988 588999999999998 777999999999999985
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=8.8e-24 Score=189.78 Aligned_cols=126 Identities=23% Similarity=0.245 Sum_probs=118.5
Q ss_pred CCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCc
Q 048228 250 NSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINL 329 (629)
Q Consensus 250 d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadv 329 (629)
...+.||||+|+. .|+.+++++|++.| ++++.+|..|+||||+|+..+ +.+++++|++ .|+++
T Consensus 11 ~~~~~t~l~~A~~----------~g~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~g~~~ 73 (136)
T 2jab_A 11 GSDLGKKLLEAAR----------AGQDDEVRILMANG-----ADVNAKDEYGLTPLYLATAHG-HLEIVEVLLK-NGADV 73 (136)
T ss_dssp -CHHHHHHHHHHH----------HTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHHT-CHHHHHHHHH-TTCCT
T ss_pred cccccHHHHHHHH----------hCCHHHHHHHHHcC-----CCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCC
Confidence 4568899999999 59999999999999 669999999999999999999 9999999999 99999
Q ss_pred ccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcC
Q 048228 330 NIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTG 406 (629)
Q Consensus 330 n~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~G 406 (629)
|.+|..|.||||+|+..++.+ ++++|+++|++++.+|..|+||||+|+..+ +.+++++|+++|
T Consensus 74 ~~~d~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~----------~~~~~~~Ll~~G 136 (136)
T 2jab_A 74 NAVDAIGFTPLHLAAFIGHLE----IAEVLLKHGADVNAQDKFGKTAFDISIGNG----------NEDLAEILQKLN 136 (136)
T ss_dssp TCCCTTCCCHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT----------CHHHHHHHHHC-
T ss_pred CcCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCcCcCCCCCCHHHHHHHCC----------CHHHHHHHHHcC
Confidence 999999999999999999988 999999999999999999999999999987 699999999987
No 90
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=2.5e-24 Score=193.45 Aligned_cols=134 Identities=21% Similarity=0.198 Sum_probs=117.6
Q ss_pred CCCccccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHh
Q 048228 243 PSLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLM 322 (629)
Q Consensus 243 gadin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll 322 (629)
|+|+ .+|..|+||||+|+. .++.+++++|++.| ++++.+|..|+||||+|+..+ +.+++++|+
T Consensus 1 G~d~-~~~~~g~t~L~~A~~----------~~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll 63 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASI----------KGDIPSVEYLLQNG-----SDPNVKDHAGWTPLHEACNHG-HLKVVELLL 63 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHH----------HTCHHHHHHHHHTT-----CCSCCCCTTSCCHHHHHHHTT-CHHHHHHHH
T ss_pred CCCC-CcCCCCCCHHHHHHH----------cCCHHHHHHHHHcC-----CCCCcCCCCCCCHHHHHHHcC-CHHHHHHHH
Confidence 5777 789999999999999 59999999999999 669999999999999999999 999999999
Q ss_pred cCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHH
Q 048228 323 TVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIF 402 (629)
Q Consensus 323 ~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~L 402 (629)
+ .|++++.+|..|.||||+|+..++.+ ++++|+++|++++.+|..|+|||++|+... ..+++++|
T Consensus 64 ~-~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~----------~~~~l~~l 128 (137)
T 3c5r_A 64 Q-HKALVNTTGYQNDSPLHDAAKNGHVD----IVKLLLSYGASRNAVNIFGLRPVDYTDDES----------MKSLLLLP 128 (137)
T ss_dssp H-TTCCTTCCCGGGCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCGGGGCCCHH----------HHHHHSCC
T ss_pred H-cCCcccCcCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHhhcc----------HHHHHhhc
Confidence 9 99999999999999999999999988 999999999999999999999999998765 47777777
Q ss_pred HHcCCC
Q 048228 403 LYTGIE 408 (629)
Q Consensus 403 L~~Gad 408 (629)
.+.+..
T Consensus 129 ~~~~~s 134 (137)
T 3c5r_A 129 EKNESS 134 (137)
T ss_dssp ------
T ss_pred cccccC
Confidence 766544
No 91
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=1.5e-22 Score=178.12 Aligned_cols=125 Identities=30% Similarity=0.318 Sum_probs=117.9
Q ss_pred CCcHHHHHHHCCCHHHHHHHHHhCCCchhhhhhhHhhhhccccCCCCcHHHHHHhcCcHHHHHHHhhcccccCCCccccc
Q 048228 19 YASPIDFAAANGHYELVKELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSSVARKLLHDCETKKGHNSLIRA 98 (629)
Q Consensus 19 g~TpLh~Aa~~G~~~~v~~LL~~gad~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~~~~d 98 (629)
|.||||+||..|+.++|++|+++|++++..+ ..|.||||+|+..++.+++++|++ .|++++.+|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~------------~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~ 65 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKD------------KNGRTPLHLAARNGHLEVVKLLLE----AGADVNAKD 65 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC------------TTSCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCC
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCCCcC------------CCCCcHHHHHHHcCcHHHHHHHHH----cCCCCcccC
Confidence 6799999999999999999999999987643 679999999999999999999999 899999999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCC
Q 048228 99 GYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVA 161 (629)
Q Consensus 99 ~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~ 161 (629)
..|.||||+|+..|+.+++++|+++|++ ++..|..|.|||++| +..++.+++++|+++|+|
T Consensus 66 ~~g~t~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A-~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 66 KNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLA-ARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH-HHTTCHHHHHHHHHHTCC
T ss_pred CCCCcHHHHHHHcChHHHHHHHHHcCCC-CcccCCCCCCHHHHH-HHcCcHHHHHHHHHcCCC
Confidence 9999999999999999999999999988 578899999999998 888999999999999985
No 92
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.87 E-value=3.4e-23 Score=202.18 Aligned_cols=168 Identities=17% Similarity=0.133 Sum_probs=129.7
Q ss_pred cCCCCCcHHHHHHhcCCcceecccCC-----------------CCccccCCCCCchHHHHHhcCCCCCccccccHHHHHH
Q 048228 218 RDVQGSTILHSASGRGQVEVLIAKSP-----------------SLISVTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLME 280 (629)
Q Consensus 218 ~d~~g~TpLh~A~~~g~~~ilL~~~g-----------------adin~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk 280 (629)
.+..+.++.++++..|....++.... ..++..+..|.||||+|+. .++.++++
T Consensus 21 ~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~~~~g~t~L~~A~~----------~g~~~~v~ 90 (222)
T 3ehr_A 21 YTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAK----------RGNLSWLR 90 (222)
T ss_dssp SCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHHEEEESCHHHHHHH----------HTCHHHHH
T ss_pred CCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhccccccccccccccccc----------cCcHHHHH
Confidence 45566666666666666544111110 1234456788999999999 59999999
Q ss_pred HHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCC-CCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHH
Q 048228 281 QLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVP-SINLNIQDGEGMTPLDLLKQHPRSASSEILIKQL 359 (629)
Q Consensus 281 ~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~-gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~L 359 (629)
+|++.| ++++.+|..|+||||+||..+ +.++|++|++ . |+++|.+|..|+||||+|+..|+.+ ++++|
T Consensus 91 ~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~~g~~~~~~d~~g~tpL~~A~~~~~~~----~v~~L 159 (222)
T 3ehr_A 91 ECLDNR-----VGVNGLDKAGSTALYWACHGG-HKDIVEMLFT-QPNIELNQQNKLGDTALHAAAWKGYAD----IVQLL 159 (222)
T ss_dssp HHHHTT-----CCTTCCCTTSCCHHHHHHHTT-CHHHHHHHTT-STTCCCCCCCTTSCCHHHHHHHHTCHH----HHHHH
T ss_pred HHHhCC-----CCccccCCCCCCHHHHHHHcC-CHHHHHHHHc-CCCCCccccCCCCCCHHHHHHHcCCHH----HHHHH
Confidence 999999 669999999999999999999 9999999999 6 9999999999999999999999988 99999
Q ss_pred HHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcCCCCccccccC
Q 048228 360 ISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTGIENASDAICD 416 (629)
Q Consensus 360 l~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~d~~g 416 (629)
+++|++++.+|..|+|||++|+..+ +.++++.|++.|++....+..+
T Consensus 160 l~~ga~~~~~~~~g~t~l~~A~~~~----------~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 160 LAKGARTDLRNIEKKLAFDMATNAA----------CASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HHHTCCSCCCCTTSCCHHHHCCSHH----------HHHHHC----------------
T ss_pred HHcCCCCccccCCCCCHHHHhcchh----------HHHHHHHHhccchhhhccchhh
Confidence 9999999999999999999999876 6999999999999988776544
No 93
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.86 E-value=1e-21 Score=185.73 Aligned_cols=142 Identities=18% Similarity=0.089 Sum_probs=126.3
Q ss_pred ccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhh
Q 048228 97 RAGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKL 176 (629)
Q Consensus 97 ~d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~ 176 (629)
.+..|.||||+||..|+.++|++||+ +++ ++..|..|.||||+| +..|+.+++++|+++|++++...
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A-~~~~~~~~v~~Ll~~ga~~~~~~---------- 106 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFV-AGLGSDKCVRLLAEAGADLDHRD---------- 106 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSC-TTCCCTTSCCHHHHH-HHHTCHHHHHHHHHTTCCTTCCC----------
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCC-CCCcCCCCCCHHHHH-HHcCCHHHHHHHHHcCCCCCcCC----------
Confidence 35578999999999999999999999 766 688999999999998 77799999999999999988653
Q ss_pred ccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcceecccCCCCccccCCCCCch
Q 048228 177 SDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVLIAKSPSLISVTNSHGDTF 256 (629)
Q Consensus 177 ~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~ilL~~~gadin~~d~~g~Tp 256 (629)
+..|+||||+|+..|+.+++++|+++|++++. +|..|.||||+|+..++. ..+.++
T Consensus 107 --------~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~~~~---------------~~~~~~ 162 (183)
T 3deo_A 107 --------MRGGLTALHMAAGYVRPEVVEALVELGADIEV-EDERGLTALELAREILKT---------------TPKGNP 162 (183)
T ss_dssp --------SSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTSCCHHHHHHHHHHT---------------CCCCSH
T ss_pred --------CCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcC-CCCCCCCHHHHHHHhccC---------------cccccH
Confidence 13478999999999999999999999999995 999999999999986543 346799
Q ss_pred HHHHHhcCCCCCccccccHHHHHHHHHcC
Q 048228 257 LHMVVAGFRSPGFRRVDHQIQLMEQLVSG 285 (629)
Q Consensus 257 Lh~A~~~~~~~~~~~~~~~~eivk~Ll~~ 285 (629)
|++|+. .++.+++++|.++
T Consensus 163 l~~a~~----------~~~~~i~~~L~~~ 181 (183)
T 3deo_A 163 MQFGRR----------IGLEKVINVLEGQ 181 (183)
T ss_dssp HHHHHH----------HHHHHHHHHHHTC
T ss_pred HHHHHH----------cCHHHHHHHHHHh
Confidence 999999 5999999999875
No 94
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.86 E-value=1.3e-21 Score=175.67 Aligned_cols=116 Identities=22% Similarity=0.278 Sum_probs=109.1
Q ss_pred hhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCC
Q 048228 292 DIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDN 371 (629)
Q Consensus 292 a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~ 371 (629)
+|+ .+|..|+||||+|+..+ +.+++++|++ .|++++.+|..|.||||+|+..++.+ ++++|+++|++++.+|.
T Consensus 2 ~d~-~~~~~g~t~L~~A~~~~-~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~ 74 (137)
T 3c5r_A 2 IDP-FTNHRGETLLHIASIKG-DIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLK----VVELLLQHKALVNTTGY 74 (137)
T ss_dssp --C-CCCTTCCCHHHHHHHHT-CHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCG
T ss_pred CCC-CcCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCcccCcCC
Confidence 346 78899999999999999 9999999999 99999999999999999999999988 99999999999999999
Q ss_pred CCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcCCCCccccccCCChhhhhh
Q 048228 372 VARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTGIENASDAICDAASVEYSS 424 (629)
Q Consensus 372 ~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~d~~g~t~~~~a~ 424 (629)
.|+||||+|+..+ +.+++++|+++|++++..|..|+||++++.
T Consensus 75 ~g~t~L~~A~~~~----------~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~ 117 (137)
T 3c5r_A 75 QNDSPLHDAAKNG----------HVDIVKLLLSYGASRNAVNIFGLRPVDYTD 117 (137)
T ss_dssp GGCCHHHHHHHTT----------CHHHHHHHHHTTCCTTCCCTTSCCGGGGCC
T ss_pred CCCCHHHHHHHcC----------CHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence 9999999999987 699999999999999999999999999773
No 95
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.86 E-value=1.2e-21 Score=172.38 Aligned_cols=111 Identities=21% Similarity=0.246 Sum_probs=103.8
Q ss_pred CCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCc
Q 048228 250 NSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINL 329 (629)
Q Consensus 250 d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadv 329 (629)
+..|.||||+|+. .++.+++++|++.+ ++++.+|..|+||||+|+..+ +.+++++|++ .|+++
T Consensus 4 ~~~~~~~l~~A~~----------~~~~~~v~~ll~~~-----~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~g~~~ 66 (123)
T 3aaa_C 4 GSMCDKEFMWALK----------NGDLDEVKDYVAKG-----EDVNRTLEGGRKPLHYAADCG-QLEILEFLLL-KGADI 66 (123)
T ss_dssp ---CHHHHHHHHH----------TTCHHHHHHHHHTT-----CCTTSCCTTSSCHHHHHHHTT-CHHHHHHHHT-TTCCT
T ss_pred ccccchHHHHHHH----------cCCHHHHHHHHHcC-----CCcCccCCCCCcHHHHHHHcC-CHHHHHHHHH-cCCCC
Confidence 4678999999999 59999999999999 569999999999999999999 9999999999 99999
Q ss_pred ccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHHHHH
Q 048228 330 NIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNAIACHL 381 (629)
Q Consensus 330 n~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~ 381 (629)
|.+|..|+||||+|+..++.+ ++++|+++|++++.+|..|+|||++|.
T Consensus 67 ~~~d~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 67 NAPDKHHITPLLSAVYEGHVS----CVKLLLSKGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp TCCCTTSCCHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred CcCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence 999999999999999999987 999999999999999999999999984
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.86 E-value=1.3e-21 Score=194.12 Aligned_cols=142 Identities=18% Similarity=0.090 Sum_probs=126.6
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhhc
Q 048228 98 AGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKLS 177 (629)
Q Consensus 98 d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~~ 177 (629)
+..|.||||+||..|+.++|++||+ +++ ++..|..|.||||+| +..|+.+++++|+++|++++....
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A-~~~g~~~~v~~Ll~~ga~~~~~~~---------- 108 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFV-AGLGSDKCVRLLAEAGADLDHRDM---------- 108 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCC-TTCBCTTSCBHHHHH-HHHTCHHHHHHHHHTTCCTTCCCS----------
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCC-CCCcCCCCCCHHHHH-HHCCCHHHHHHHHHcCCCCCcCCC----------
Confidence 3468999999999999999999999 776 688999999999999 777999999999999999986641
Q ss_pred cchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcceecccCCCCccccCCCCCchH
Q 048228 178 DSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVLIAKSPSLISVTNSHGDTFL 257 (629)
Q Consensus 178 ~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~ilL~~~gadin~~d~~g~TpL 257 (629)
..|+||||+|+..|+.++|++|+++|++++. +|..|.||||+|+..+. ...+.|||
T Consensus 109 --------~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~t~l~~A~~~~~---------------~~~~~~~l 164 (244)
T 3ui2_A 109 --------RGGLTALHMAAGYVRPEVVEALVELGADIEV-EDERGLTALELAREILK---------------TTPKGNPM 164 (244)
T ss_dssp --------SSCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHHT---------------TCCCSSHH
T ss_pred --------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHHHh---------------ccCCCCHH
Confidence 3478999999999999999999999999995 99999999999997443 25689999
Q ss_pred HHHHhcCCCCCccccccHHHHHHHHHcCC
Q 048228 258 HMVVAGFRSPGFRRVDHQIQLMEQLVSGK 286 (629)
Q Consensus 258 h~A~~~~~~~~~~~~~~~~eivk~Ll~~g 286 (629)
|+|+. .++.+++++|++.+
T Consensus 165 ~~a~~----------~g~~~iv~~L~~~~ 183 (244)
T 3ui2_A 165 QFGRR----------IGLEKVINVLEGQV 183 (244)
T ss_dssp HHHHH----------HHHHHHHHHHHHHH
T ss_pred HHHHH----------cChHHHHHHHHHhc
Confidence 99999 59999999999864
No 97
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.85 E-value=3.1e-22 Score=198.67 Aligned_cols=142 Identities=21% Similarity=0.123 Sum_probs=125.8
Q ss_pred CCCcHHHHHHHCCCHHHHHHHHHhCCCchhhhhhhHhhhhccccCCCCcHHHHHHhcCcHHHHHHHhhcccccCCCcccc
Q 048228 18 WYASPIDFAAANGHYELVKELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSSVARKLLHDCETKKGHNSLIR 97 (629)
Q Consensus 18 ~g~TpLh~Aa~~G~~~~v~~LL~~gad~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~~~~ 97 (629)
.|.||||+||..|+.++|++||+ |++++.++ ..|.||||+|+..++.+++++|++ +|++++.+
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d------------~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~ 106 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLE-DRDVDAVD------------ENGRTALLFVAGLGSDKCVRLLAE----AGADLDHR 106 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBC------------TTSCBHHHHHHHHTCHHHHHHHHH----TTCCTTCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcC------------CCCCCHHHHHHHCCCHHHHHHHHH----cCCCCCcC
Confidence 46799999999999999999999 99998754 679999999999999999999999 99999999
Q ss_pred c-CCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhh
Q 048228 98 A-GYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKL 176 (629)
Q Consensus 98 d-~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~ 176 (629)
+ ..|.||||+|+..|+.++|++|+++|++ ++..|..|.||||+|+ . +.+.
T Consensus 107 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~-~---------~~~~------------------ 157 (244)
T 3ui2_A 107 DMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAR-E---------ILKT------------------ 157 (244)
T ss_dssp CSSSCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHH-H---------HHTT------------------
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHH-H---------HHhc------------------
Confidence 8 7899999999999999999999999988 5889999999999994 3 1111
Q ss_pred ccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCc
Q 048228 177 SDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENV 214 (629)
Q Consensus 177 ~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~ 214 (629)
..+.||||+|+..|+.+++++|++++.+.
T Consensus 158 ---------~~~~~~l~~a~~~g~~~iv~~L~~~~~~~ 186 (244)
T 3ui2_A 158 ---------TPKGNPMQFGRRIGLEKVINVLEGQVFEY 186 (244)
T ss_dssp ---------CCCSSHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred ---------cCCCCHHHHHHHcChHHHHHHHHHhcccc
Confidence 22569999999999999999999976543
No 98
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.85 E-value=1.1e-21 Score=185.64 Aligned_cols=138 Identities=21% Similarity=0.101 Sum_probs=123.5
Q ss_pred CCCcHHHHHHHCCCHHHHHHHHHhCCCchhhhhhhHhhhhccccCCCCcHHHHHHhcCcHHHHHHHhhcccccCCCcccc
Q 048228 18 WYASPIDFAAANGHYELVKELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSSVARKLLHDCETKKGHNSLIR 97 (629)
Q Consensus 18 ~g~TpLh~Aa~~G~~~~v~~LL~~gad~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~~~~ 97 (629)
.|.||||+||..|+.++|++||+ |++++.++ ..|.||||+|+..++.+++++|++ +|++++.+
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d------------~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~ 105 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE-DRDVDAVD------------ENGRTALLFVAGLGSDKCVRLLAE----AGADLDHR 105 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCC------------TTSCCHHHHHHHHTCHHHHHHHHH----TTCCTTCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcC------------CCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCcC
Confidence 46799999999999999999999 99998754 679999999999999999999999 99999999
Q ss_pred c-CCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhhh
Q 048228 98 A-GYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEKL 176 (629)
Q Consensus 98 d-~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~~ 176 (629)
+ ..|.||||+|+..|+.++|++|+++|++ ++.+|..|.||||+| +..++
T Consensus 106 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A-~~~~~---------------------------- 155 (183)
T 3deo_A 106 DMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELA-REILK---------------------------- 155 (183)
T ss_dssp CSSSSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHH-HHHHH----------------------------
T ss_pred CCCCCCCHHHHHHhcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHH-HHhcc----------------------------
Confidence 8 8899999999999999999999999988 588999999999999 43221
Q ss_pred ccchhHHhhhccchHHHHHHhcCCHHHHHHHHhC
Q 048228 177 SDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGD 210 (629)
Q Consensus 177 ~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~ 210 (629)
...+.++|++|+..|+.+++++|.++
T Consensus 156 --------~~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 156 --------TTPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp --------TCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred --------CcccccHHHHHHHcCHHHHHHHHHHh
Confidence 12246999999999999999999876
No 99
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.85 E-value=1.6e-21 Score=199.61 Aligned_cols=146 Identities=14% Similarity=0.149 Sum_probs=110.3
Q ss_pred chHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcceecccCCCCccccCCCCCchHHHHHhcCCCCC
Q 048228 189 NRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVLIAKSPSLISVTNSHGDTFLHMVVAGFRSPG 268 (629)
Q Consensus 189 ~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~ilL~~~gadin~~d~~g~TpLh~A~~~~~~~~ 268 (629)
.++|+.|+..|+.+.|+.|++.|++++... .. ...+..|+||||+|+..+.
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~---------------------~~-----~~~~~~g~t~Lh~A~~~~~--- 202 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPL---------------------PG-----PDAQAPEELVLHLAVKVAN--- 202 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSCE---------------------EC-----SSSCSCEECHHHHHHHTCC---
T ss_pred HHHHhhhhhccCHHHHHHHHhcCCcccccC---------------------CC-----cccCCCCccHHHHHHHhcc---
Confidence 478999999999999999999999887410 00 0135566777777776210
Q ss_pred ccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCC
Q 048228 269 FRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPR 348 (629)
Q Consensus 269 ~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~ 348 (629)
.++.+++++|++.| +++|.+|..|+||||+|+..+ +.++|++||+ +|+|++.+|..|.||||+|+..++
T Consensus 203 ----~~~~~iv~~Ll~~g-----advn~~d~~G~TpLh~A~~~g-~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~~~ 271 (301)
T 2b0o_E 203 ----QASLPLVDFIIQNG-----GHLDAKAADGNTALHYAALYN-QPDCLKLLLK-GRALVGTVNEAGETALDIARKKHH 271 (301)
T ss_dssp ----TTTHHHHHHHHHHS-----SCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHH-TTCCCSCCCTTSCCHHHHHHHHTC
T ss_pred ----cCcHHHHHHHHhcC-----CCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCC
Confidence 16788888888888 568888888888888888888 8888888888 888888888888888888888888
Q ss_pred CchHHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhC
Q 048228 349 SASSEILIKQLISAGGISNCQDNVARNAIACHLKGQ 384 (629)
Q Consensus 349 ~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~ 384 (629)
.+ ++++|+++|++ .|.||||+|+..+
T Consensus 272 ~~----iv~~Ll~~ga~------~g~tpLh~A~~~g 297 (301)
T 2b0o_E 272 KE----CEELLEQAQAG------TFAFPLHVDYSWV 297 (301)
T ss_dssp HH----HHHHHHHHHHH------TTSSCCC------
T ss_pred HH----HHHHHHHhcCC------CCCChhHHHHhcC
Confidence 77 88888888887 4678888888654
No 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.84 E-value=5.3e-21 Score=168.30 Aligned_cols=110 Identities=13% Similarity=0.138 Sum_probs=103.8
Q ss_pred CcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHH
Q 048228 298 NNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNAI 377 (629)
Q Consensus 298 d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL 377 (629)
+..|.||||+|+..+ +.+++++|++ .|+++|.+|..|+||||+|+..++.+ ++++|+++|+++|.+|..|+|||
T Consensus 4 ~~~~~~~l~~A~~~~-~~~~v~~ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~d~~g~tpL 77 (123)
T 3aaa_C 4 GSMCDKEFMWALKNG-DLDEVKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLE----ILEFLLLKGADINAPDKHHITPL 77 (123)
T ss_dssp ---CHHHHHHHHHTT-CHHHHHHHHH-TTCCTTSCCTTSSCHHHHHHHTTCHH----HHHHHHTTTCCTTCCCTTSCCHH
T ss_pred ccccchHHHHHHHcC-CHHHHHHHHH-cCCCcCccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCCcCCCCCCCHH
Confidence 467899999999999 9999999999 99999999999999999999999988 99999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCChhhHHHHHHcCCCCccccccCCChhhhh
Q 048228 378 ACHLKGQGIGVSPGSSFRVPDAEIFLYTGIENASDAICDAASVEYS 423 (629)
Q Consensus 378 ~~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~d~~g~t~~~~a 423 (629)
|+|+..+ +.+++++|+++|++++..|..|+||++++
T Consensus 78 ~~A~~~~----------~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 78 LSAVYEG----------HVSCVKLLLSKGADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp HHHHHHT----------CHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred HHHHHcC----------CHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence 9999987 69999999999999999999999999987
No 101
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.84 E-value=4.3e-21 Score=194.18 Aligned_cols=196 Identities=15% Similarity=0.099 Sum_probs=145.3
Q ss_pred hhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcce--ecccCCCCccccCCCCCchHHHHH
Q 048228 184 KWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEV--LIAKSPSLISVTNSHGDTFLHMVV 261 (629)
Q Consensus 184 ~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~i--lL~~~gadin~~d~~g~TpLh~A~ 261 (629)
.|..+.+.|+.+...|+..+.+++...-......+-..+....+.. ..+.. +........+.......++|+.|+
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~---~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~ 138 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARK---DYITAKYMERRYARKKHADTAAKLHSLCEAV 138 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHH---HHHHHHHTTCTTSCCCSSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHH---HHHHHHHHHhhcccccccccchhhhhhhhHh
Confidence 3455778999999999988877765432221100111111111110 00000 112222222233334567999999
Q ss_pred hcCCCCCccccccHHHHHHHHHcCCCCcchhh--hccCCcCCchHHHHHHHc---CCcHHHHHHHhcCCCCCcccCCCCC
Q 048228 262 AGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDI--INVTNNNGRTALHLAVSE---NIQCNLVELLMTVPSINLNIQDGEG 336 (629)
Q Consensus 262 ~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~--in~~d~~g~TpLh~A~~~---~~~~~iv~~Ll~~~gadvn~~d~~G 336 (629)
. .++.+.++.|++.| .++... ++..+..|+||||+|+.. + +.+++++|++ +|+++|.+|..|
T Consensus 139 ~----------~~d~~~~~~ll~~g-~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~-~~~~v~~Ll~-~ga~in~~d~~g 205 (278)
T 1dcq_A 139 K----------TRDIFGLLQAYADG-VDLTEKIPLANGHEPDETALHLAVRSVDRT-SLHIVDFLVQ-NSGNLDKQTGKG 205 (278)
T ss_dssp H----------TTCHHHHHHHHHTT-CCTTSBCCCSSCSSTTCBHHHHHHHHCCTT-THHHHHHHHH-HCSCTTCCCTTC
T ss_pred h----------hcccHHHHHHHHhh-cchhhhccccccccCCCCcchHHHHhcccc-hHHHHHHHHH-CCCCccccCCCC
Confidence 9 59999999999998 431111 555688999999999998 7 9999999999 999999999999
Q ss_pred CcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHHcCCCC
Q 048228 337 MTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLYTGIEN 409 (629)
Q Consensus 337 ~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad~ 409 (629)
+||||+|+..|+.+ ++++|+++|+|++.+|..|+||||+|+..+ +.+++++|+++|++.
T Consensus 206 ~TpLh~A~~~g~~~----~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~----------~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 206 STALHYCCLTDNAE----CLKLLLRGKASIEIANESGETPLDIAKRLK----------HEHCEELLTQALSGR 264 (278)
T ss_dssp CCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT----------CHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHcCCHH----HHHHHHHcCCCCCCccCCCCCHHHHHHHcC----------CHHHHHHHHHcCCCC
Confidence 99999999999988 999999999999999999999999999987 699999999999964
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.84 E-value=1.1e-21 Score=191.53 Aligned_cols=139 Identities=22% Similarity=0.288 Sum_probs=88.9
Q ss_pred HhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcceecccCCCCccccCCCCCchHHHHHh
Q 048228 183 FKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVLIAKSPSLISVTNSHGDTFLHMVVA 262 (629)
Q Consensus 183 ~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~ilL~~~gadin~~d~~g~TpLh~A~~ 262 (629)
..+..|.||||+|+..|+.++|++|++.|++++. +|.. |+||||+|+.
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~-------------------------------g~t~L~~A~~ 115 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG-LDKA-------------------------------GSTALYWACH 115 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTT-------------------------------SCCHHHHHHH
T ss_pred ccccccccccccccccCcHHHHHHHHhCCCCccc-cCCC-------------------------------CCCHHHHHHH
Confidence 4566788999999999999999999998887764 4444 5555555555
Q ss_pred cCCCCCccccccHHHHHHHHHcC-CCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHH
Q 048228 263 GFRSPGFRRVDHQIQLMEQLVSG-KIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLD 341 (629)
Q Consensus 263 ~~~~~~~~~~~~~~eivk~Ll~~-g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh 341 (629)
.++.+++++|++. | +++|.+|..|+||||+|+..+ +.++|++|++ +|++++.+|..|.||||
T Consensus 116 ----------~~~~~~v~~Ll~~~g-----~~~~~~d~~g~tpL~~A~~~~-~~~~v~~Ll~-~ga~~~~~~~~g~t~l~ 178 (222)
T 3ehr_A 116 ----------GGHKDIVEMLFTQPN-----IELNQQNKLGDTALHAAAWKG-YADIVQLLLA-KGARTDLRNIEKKLAFD 178 (222)
T ss_dssp ----------TTCHHHHHHHTTSTT-----CCCCCCCTTSCCHHHHHHHHT-CHHHHHHHHH-HTCCSCCCCTTSCCHHH
T ss_pred ----------cCCHHHHHHHHcCCC-----CCccccCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCCccccCCCCCHHH
Confidence 3667777777776 5 447777777777777777777 7777777777 67777777777777777
Q ss_pred HHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCc
Q 048228 342 LLKQHPRSASSEILIKQLISAGGISNCQDNVAR 374 (629)
Q Consensus 342 ~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~ 374 (629)
+|+..+..+ +++.|++.|++.+..+..|+
T Consensus 179 ~A~~~~~~~----~l~~l~~~~~~~~~~~~~~~ 207 (222)
T 3ehr_A 179 MATNAACAS----LLKKKQGTDAVRTLSNAEDY 207 (222)
T ss_dssp HCCSHHHHH----HHC-----------------
T ss_pred HhcchhHHH----HHHHHhccchhhhccchhhh
Confidence 777766555 77777777777666655443
No 103
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.84 E-value=3.3e-21 Score=197.26 Aligned_cols=136 Identities=13% Similarity=0.138 Sum_probs=122.9
Q ss_pred CCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhcc------CCcCCchHHHHHHHc---CCcHHHHHHHh
Q 048228 252 HGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINV------TNNNGRTALHLAVSE---NIQCNLVELLM 322 (629)
Q Consensus 252 ~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~------~d~~g~TpLh~A~~~---~~~~~iv~~Ll 322 (629)
.+.++|+.|+. .++.+.++.|++.| ++++. .+..|+||||+|+.. + +.+++++||
T Consensus 150 ~~~~~L~~A~~----------~g~~~~v~~ll~~g-----~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~-~~~iv~~Ll 213 (301)
T 2b0o_E 150 PEPQRLWTAIC----------NRDLLSVLEAFANG-----QDFGQPLPGPDAQAPEELVLHLAVKVANQA-SLPLVDFII 213 (301)
T ss_dssp -CHHHHHHHHH----------TTCHHHHHHHHHTT-----CCTTSCEECSSSCSCEECHHHHHHHTCCTT-THHHHHHHH
T ss_pred chHHHHhhhhh----------ccCHHHHHHHHhcC-----CcccccCCCcccCCCCccHHHHHHHhcccC-cHHHHHHHH
Confidence 34578999999 59999999999999 55777 689999999999987 7 999999999
Q ss_pred cCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHH
Q 048228 323 TVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIF 402 (629)
Q Consensus 323 ~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~L 402 (629)
+ .|+++|.+|..|+||||+|+..|+.+ ++++|+++|+|++.+|..|+|||++|+..+ +.+++++|
T Consensus 214 ~-~gadvn~~d~~G~TpLh~A~~~g~~~----~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~----------~~~iv~~L 278 (301)
T 2b0o_E 214 Q-NGGHLDAKAADGNTALHYAALYNQPD----CLKLLLKGRALVGTVNEAGETALDIARKKH----------HKECEELL 278 (301)
T ss_dssp H-HSSCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCCCSCCCTTSCCHHHHHHHHT----------CHHHHHHH
T ss_pred h-cCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcC----------CHHHHHHH
Confidence 9 99999999999999999999999988 999999999999999999999999999987 69999999
Q ss_pred HHcCCCCccccccCCChhhhhh
Q 048228 403 LYTGIENASDAICDAASVEYSS 424 (629)
Q Consensus 403 L~~Gad~~~~d~~g~t~~~~a~ 424 (629)
+++|++ .|.||+++|.
T Consensus 279 l~~ga~------~g~tpLh~A~ 294 (301)
T 2b0o_E 279 EQAQAG------TFAFPLHVDY 294 (301)
T ss_dssp HHHHHH------TTSSCCC---
T ss_pred HHhcCC------CCCChhHHHH
Confidence 999987 4889999764
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.83 E-value=4.6e-20 Score=186.59 Aligned_cols=204 Identities=17% Similarity=0.152 Sum_probs=146.6
Q ss_pred cccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCchhhh
Q 048228 96 IRAGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPRCCLSSGGEFEEK 175 (629)
Q Consensus 96 ~~d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~~~~~~~~~~~~~ 175 (629)
..|..+.+.|+.+...|+..+.+++...-+.....+-..+..... + ...-..+++....+....
T Consensus 61 ~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~----~-~~fI~aKYl~~~f~~~~~----------- 124 (278)
T 1dcq_A 61 TLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIA----R-KDYITAKYMERRYARKKH----------- 124 (278)
T ss_dssp TTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHH----H-HHHHHHHHTTCTTSCCCS-----------
T ss_pred ecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHH----H-HHHHHHHHHHhhcccccc-----------
Confidence 467788889999999999888777654332211101111111111 1 111122233222111000
Q ss_pred hccchhHHhhhccchHHHHHHhcCCHHHHHHHHhCCCCcccccCCCCCcHHHHHHhcCCcceecccCCCCccccCCCCCc
Q 048228 176 LSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLGDCENVLAYRDVQGSTILHSASGRGQVEVLIAKSPSLISVTNSHGDT 255 (629)
Q Consensus 176 ~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~gad~~~~~d~~g~TpLh~A~~~g~~~ilL~~~gadin~~d~~g~T 255 (629)
.......++|+.|+..|+.+.++.|++.|++++.. ..++..|..|+|
T Consensus 125 -------~~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~--------------------------~~l~~~~~~g~t 171 (278)
T 1dcq_A 125 -------ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEK--------------------------IPLANGHEPDET 171 (278)
T ss_dssp -------SSHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSB--------------------------CCCSSCSSTTCB
T ss_pred -------cccchhhhhhhhHhhhcccHHHHHHHHhhcchhhh--------------------------ccccccccCCCC
Confidence 01112347999999999999999999999987641 113444677899
Q ss_pred hHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCC
Q 048228 256 FLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGE 335 (629)
Q Consensus 256 pLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~ 335 (629)
|||+|+..+. .++.+++++|+++| +++|.+|..|+||||+|+..| +.++|++||+ +|+|+|.+|..
T Consensus 172 ~Lh~A~~~~~-------~~~~~~v~~Ll~~g-----a~in~~d~~g~TpLh~A~~~g-~~~~v~~Ll~-~gad~~~~d~~ 237 (278)
T 1dcq_A 172 ALHLAVRSVD-------RTSLHIVDFLVQNS-----GNLDKQTGKGSTALHYCCLTD-NAECLKLLLR-GKASIEIANES 237 (278)
T ss_dssp HHHHHHHHCC-------TTTHHHHHHHHHHC-----SCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCTT
T ss_pred cchHHHHhcc-------cchHHHHHHHHHCC-----CCccccCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCCCCccCC
Confidence 9999998311 17899999999999 679999999999999999999 9999999999 99999999999
Q ss_pred CCcHHHHHHhCCCCchHHHHHHHHHHcCCCC
Q 048228 336 GMTPLDLLKQHPRSASSEILIKQLISAGGIS 366 (629)
Q Consensus 336 G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadv 366 (629)
|.||||+|+..|+.+ ++++|+++|++.
T Consensus 238 g~tpL~~A~~~~~~~----~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 238 GETPLDIAKRLKHEH----CEELLTQALSGR 264 (278)
T ss_dssp SCCHHHHHHHTTCHH----HHHHHHHHHTTC
T ss_pred CCCHHHHHHHcCCHH----HHHHHHHcCCCC
Confidence 999999999999987 999999999853
No 105
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.83 E-value=1.8e-20 Score=156.29 Aligned_cols=93 Identities=29% Similarity=0.472 Sum_probs=88.1
Q ss_pred CCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHHH
Q 048228 300 NGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNAIAC 379 (629)
Q Consensus 300 ~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~ 379 (629)
+|+||||+|+..+ +.+++++|++ .|+++|.+|..|+||||+|+..++.+ ++++|+++|++++.+|..|+||||+
T Consensus 1 ~g~t~L~~A~~~~-~~~~v~~Ll~-~g~~~n~~d~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~d~~g~t~l~~ 74 (93)
T 1n0q_A 1 NGRTPLHLAARNG-HLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLE----VVKLLLEAGADVNAKDKNGRTPLHL 74 (93)
T ss_dssp --CCHHHHHHHHT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCCcHHHHHHHcC-CHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCccCCCCCCHHHH
Confidence 4899999999999 9999999999 99999999999999999999999988 9999999999999999999999999
Q ss_pred HHHhCCCCCCCCCCCChhhHHHHHHcCCC
Q 048228 380 HLKGQGIGVSPGSSFRVPDAEIFLYTGIE 408 (629)
Q Consensus 380 A~~~~~~~~~~~~~~~~~~v~~LL~~Gad 408 (629)
|+..+ +.+++++|+++||+
T Consensus 75 A~~~~----------~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 75 AARNG----------HLEVVKLLLEAGAY 93 (93)
T ss_dssp HHHTT----------CHHHHHHHHHTTCC
T ss_pred HHHcC----------CHHHHHHHHHcCCC
Confidence 99987 69999999999986
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.83 E-value=1e-20 Score=198.45 Aligned_cols=148 Identities=16% Similarity=0.188 Sum_probs=119.0
Q ss_pred cccCCCCCchHHHHHhcCCCCCccccc-cHHHHHHHHHcCCCCcchhhhccCC--cCCchHHHHHHHcCCcHHHHHHHhc
Q 048228 247 SVTNSHGDTFLHMVVAGFRSPGFRRVD-HQIQLMEQLVSGKIVEVKDIINVTN--NNGRTALHLAVSENIQCNLVELLMT 323 (629)
Q Consensus 247 n~~d~~g~TpLh~A~~~~~~~~~~~~~-~~~eivk~Ll~~g~~d~~a~in~~d--~~g~TpLh~A~~~~~~~~iv~~Ll~ 323 (629)
+..+..+.|+||.|+. . ++.+++++|++.| +++|..+ ..|.||||+|+..+ +.++|++||+
T Consensus 193 ~l~~~~~~t~L~~Aa~----------~~g~~~~v~~LL~~G-----advn~~~~~~~g~TpLh~Aa~~g-~~~iv~~LL~ 256 (368)
T 3jue_A 193 DLGSLHPGALLFRASG----------HPPSLPTMADALAHG-----ADVNWVNGGQDNATPLIQATAAN-SLLACEFLLQ 256 (368)
T ss_dssp ----CCHHHHHHHHTS----------SSCCHHHHHHHHHTT-----CCTTCCCTTTTCCCHHHHHHHTT-CHHHHHHHHH
T ss_pred ccccCCCCcHHHHHHH----------ccCCHHHHHHHHHcC-----CCCCccccccCCCCHHHHHHHCC-CHHHHHHHHH
Confidence 3344567899999999 5 8999999999999 6699988 89999999999999 9999999999
Q ss_pred CCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHH
Q 048228 324 VPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFL 403 (629)
Q Consensus 324 ~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL 403 (629)
+|+++|.+|..|+||||+|+..++.+ ++++|+++|++++.+|..|+||||+|+..+ +.+++++|+
T Consensus 257 -~Gadvn~~d~~G~TpLh~A~~~g~~~----~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g----------~~~iv~lLl 321 (368)
T 3jue_A 257 -NGANVNQADSAGRGPLHHATILGHTG----LACLFLKRGADLGARDSEGRDPLTIAMETA----------NADIVTLLR 321 (368)
T ss_dssp -TTCCTTCCCTTSCCHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT----------CHHHHHHHH
T ss_pred -cCCCCCCCCCCCCCHHHHHHHcCcHH----HHHHHHHCcCCCCCcCCCCCCHHHHHHHCC----------CHHHHHHHH
Confidence 99999999999999999999999988 999999999999999999999999999887 699999999
Q ss_pred HcCCC---CccccccCCChhhhhhh
Q 048228 404 YTGIE---NASDAICDAASVEYSSC 425 (629)
Q Consensus 404 ~~Gad---~~~~d~~g~t~~~~a~~ 425 (629)
.+|+. ....+..+.|+++++..
T Consensus 322 ~~~~~~~~~~~~~~~~~t~l~i~~~ 346 (368)
T 3jue_A 322 LAKMREAEAAQGQAGDETYLDIFRD 346 (368)
T ss_dssp HHHC---------------------
T ss_pred HcCCCcccccccCCCCCCHHHHHHH
Confidence 98744 33445566777776644
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=2.1e-20 Score=205.08 Aligned_cols=128 Identities=13% Similarity=0.158 Sum_probs=116.0
Q ss_pred CchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccC------CcCCchHHHHHHH---cCCcHHHHHHHhcC
Q 048228 254 DTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVT------NNNGRTALHLAVS---ENIQCNLVELLMTV 324 (629)
Q Consensus 254 ~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~------d~~g~TpLh~A~~---~~~~~~iv~~Ll~~ 324 (629)
.+.||.|+. .|+.++++.|++.| +++|.. |..|+||||+||. .+ +.++|++||+
T Consensus 133 ~~~L~~A~~----------~g~~~~v~~ll~~g-----~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g-~~~~v~~Ll~- 195 (497)
T 3lvq_E 133 PQRLWTAIC----------NRDLLSVLEAFANG-----QDFGQPLPGPDAQAPEELVLHLAVKVANQA-SLPLVDFIIQ- 195 (497)
T ss_dssp HHHHHHHHH----------HTCHHHHHHHHHTT-----CCSSSCBCCSSSCCSCBCHHHHHHHTCCTT-THHHHHHHHH-
T ss_pred HHHHHHHHh----------ccCHHHHHHHHhhc-----ccccCCCCCcccccccchHHHHHHHhcccc-cHHHHHHHHH-
Confidence 368999999 59999999999999 568877 8899999999976 77 9999999999
Q ss_pred CCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHHHHHHHhCCCCCCCCCCCChhhHHHHHH
Q 048228 325 PSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNAIACHLKGQGIGVSPGSSFRVPDAEIFLY 404 (629)
Q Consensus 325 ~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~ 404 (629)
+|+|+|.+|..|+||||+|+..|+.+ ++++|+++|||+|.+|..|+||||+|+..+ +.+++++|++
T Consensus 196 ~ga~vn~~d~~g~TpLh~A~~~g~~~----~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~----------~~~~~~~Ll~ 261 (497)
T 3lvq_E 196 NGGHLDAKAADGNTALHYAALYNQPD----CLKLLLKGRALVGTVNEAGETALDIARKKH----------HKECEELLEQ 261 (497)
T ss_dssp HSCCTTCCCSSSCCHHHHHTTTTCHH----HHHHHHHTCCCCSCCCTTCCCHHHHHHHTT----------CHHHHHHHHH
T ss_pred cCCCCCccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcC----------CHHHHHHHHH
Confidence 99999999999999999999999988 999999999999999999999999999887 6999999999
Q ss_pred cCCCCccc
Q 048228 405 TGIENASD 412 (629)
Q Consensus 405 ~Gad~~~~ 412 (629)
+||+++..
T Consensus 262 ~ga~~~~~ 269 (497)
T 3lvq_E 262 AQAGTFAF 269 (497)
T ss_dssp TCC-----
T ss_pred hCCCCCCC
Confidence 99998764
No 108
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.81 E-value=5.3e-20 Score=192.94 Aligned_cols=129 Identities=15% Similarity=0.077 Sum_probs=103.1
Q ss_pred CCCCCcHHHHHHHC-CCHHHHHHHHHhCCCchhhhhhhHhhhhccccCCCCcHHHHHHhcCcHHHHHHHhhcccccCCCc
Q 048228 16 QWWYASPIDFAAAN-GHYELVKELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSSVARKLLHDCETKKGHNS 94 (629)
Q Consensus 16 ~~~g~TpLh~Aa~~-G~~~~v~~LL~~gad~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~ 94 (629)
.+.+.|+||+||.. |++++|++||++|++++..+ ....|.||||+|+..++.+++++|++ +|+++
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~----------~~~~g~TpLh~Aa~~g~~~iv~~LL~----~Gadv 261 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVN----------GGQDNATPLIQATAANSLLACEFLLQ----NGANV 261 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCC----------TTTTCCCHHHHHHHTTCHHHHHHHHH----TTCCT
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccc----------cccCCCCHHHHHHHCCCHHHHHHHHH----cCCCC
Confidence 45566888888888 88888888888888887643 12567888888888888888888888 78888
Q ss_pred ccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCC
Q 048228 95 LIRAGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAV 160 (629)
Q Consensus 95 ~~~d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga 160 (629)
+.+|..|.||||+|+..|+.++|++||++|++ ++..|..|.||||+| +..++.+++++|++.|.
T Consensus 262 n~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A-~~~g~~~iv~lLl~~~~ 325 (368)
T 3jue_A 262 NQADSAGRGPLHHATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIA-METANADIVTLLRLAKM 325 (368)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH-HHTTCHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHH-HHCCCHHHHHHHHHcCC
Confidence 88888888888888888888888888888877 477788888888887 67788888888887764
No 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.81 E-value=6.5e-20 Score=152.84 Aligned_cols=93 Identities=30% Similarity=0.536 Sum_probs=87.5
Q ss_pred CCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCccc
Q 048228 252 HGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNI 331 (629)
Q Consensus 252 ~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~ 331 (629)
+|+||||+|+. .++.+++++|++.| +++|.+|..|+||||+|+..+ +.+++++|++ .|++++.
T Consensus 1 ~g~t~L~~A~~----------~~~~~~v~~Ll~~g-----~~~n~~d~~g~t~L~~A~~~~-~~~~v~~Ll~-~ga~~~~ 63 (93)
T 1n0q_A 1 NGRTPLHLAAR----------NGHLEVVKLLLEAG-----ADVNAKDKNGRTPLHLAARNG-HLEVVKLLLE-AGADVNA 63 (93)
T ss_dssp --CCHHHHHHH----------HTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHH-TTCCTTC
T ss_pred CCCcHHHHHHH----------cCCHHHHHHHHHcC-----CCCcccCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCCCc
Confidence 48999999999 59999999999999 669999999999999999999 9999999999 9999999
Q ss_pred CCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCC
Q 048228 332 QDGEGMTPLDLLKQHPRSASSEILIKQLISAGGI 365 (629)
Q Consensus 332 ~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gad 365 (629)
+|..|+||||+|+..++.+ ++++|+++||+
T Consensus 64 ~d~~g~t~l~~A~~~~~~~----~~~~Ll~~ga~ 93 (93)
T 1n0q_A 64 KDKNGRTPLHLAARNGHLE----VVKLLLEAGAY 93 (93)
T ss_dssp CCTTSCCHHHHHHHTTCHH----HHHHHHHTTCC
T ss_pred cCCCCCCHHHHHHHcCCHH----HHHHHHHcCCC
Confidence 9999999999999999988 99999999985
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.81 E-value=1.1e-19 Score=199.41 Aligned_cols=131 Identities=20% Similarity=0.061 Sum_probs=116.4
Q ss_pred cHHHHHHHCCCHHHHHHHHHhCCCchhhhhhhHhhhhccccCCCCcHHHHHHh---cCcHHHHHHHhhcccccCCCcccc
Q 048228 21 SPIDFAAANGHYELVKELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVAK---CRSSVARKLLHDCETKKGHNSLIR 97 (629)
Q Consensus 21 TpLh~Aa~~G~~~~v~~LL~~gad~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~---~~~~~i~~lL~~~~~~~g~~~~~~ 97 (629)
+.||.|+..|+.++|+.||+.|++++.... .......|.||||+|+. .++.+++++|++ +|+++|.+
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~------~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~----~ga~vn~~ 203 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLP------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQ----NGGHLDAK 203 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBC------CSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHH----HSCCTTCC
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCC------CcccccccchHHHHHHHhcccccHHHHHHHHH----cCCCCCcc
Confidence 679999999999999999999999986410 01124679999999966 799999999999 99999999
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHHcCCCCc
Q 048228 98 AGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLDNAVAPR 163 (629)
Q Consensus 98 d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~~Ga~~~ 163 (629)
|..|.||||+||..|+.++|++||++|++ ++..|..|.||||+| +..|+.+++++|+++|++++
T Consensus 204 d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A-~~~~~~~~~~~Ll~~ga~~~ 267 (497)
T 3lvq_E 204 AADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIA-RKKHHKECEELLEQAQAGTF 267 (497)
T ss_dssp CSSSCCHHHHHTTTTCHHHHHHHHHTCCC-CSCCCTTCCCHHHHH-HHTTCHHHHHHHHHTCC---
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHH-HHcCCHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999998 688999999999998 78899999999999999877
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.81 E-value=2.7e-20 Score=161.59 Aligned_cols=110 Identities=17% Similarity=0.237 Sum_probs=101.7
Q ss_pred ccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCc
Q 048228 295 NVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVAR 374 (629)
Q Consensus 295 n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~ 374 (629)
..+|.+|+||||+|+..+ +.+++++|++ .|++++.+|..|.||||+|+..++.+ ++++|+++|++++.+|..|+
T Consensus 3 ~~~d~~g~t~L~~A~~~~-~~~~~~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~d~~g~ 76 (115)
T 2l6b_A 3 MWGSKDGNTPLHNAAKNG-HAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAE----IVKLLLAKGADVNARSKDGN 76 (115)
T ss_dssp -CCSCSSCCHHHHHHHHT-CHHHHHHHTT-TTCCSSCCCSSSCCTTHHHHTTTCHH----HHHHHTTTTCCTTCCCTTCC
T ss_pred cccCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHH----HHHHHHHcCCCCcccCCCCC
Confidence 357899999999999999 9999999999 99999999999999999999999988 99999999999999999999
Q ss_pred cHHHHHHHhCCCCCCCCCCCChhhHHHHHHcCCCCccccccCCChh
Q 048228 375 NAIACHLKGQGIGVSPGSSFRVPDAEIFLYTGIENASDAICDAASV 420 (629)
Q Consensus 375 TpL~~A~~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~d~~g~t~~ 420 (629)
||||+|+..+ +.+++++|+++|||++..+..|.++.
T Consensus 77 tpl~~A~~~~----------~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 77 TPEHLAKKNG----------HHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp CTTHHHHTTT----------CHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred CHHHHHHHCC----------CHHHHHHHHHcCCCCCcCCccccccc
Confidence 9999999886 69999999999999999998888764
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.80 E-value=2.4e-20 Score=161.98 Aligned_cols=109 Identities=24% Similarity=0.359 Sum_probs=101.4
Q ss_pred ccCCCCCchHHHHHhcCCCCCccccccHHHHHHHHHcCCCCcchhhhccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCC
Q 048228 248 VTNSHGDTFLHMVVAGFRSPGFRRVDHQIQLMEQLVSGKIVEVKDIINVTNNNGRTALHLAVSENIQCNLVELLMTVPSI 327 (629)
Q Consensus 248 ~~d~~g~TpLh~A~~~~~~~~~~~~~~~~eivk~Ll~~g~~d~~a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~ga 327 (629)
.+|..|+||||+|+. .++.+++++|++.+ ++++.+|..|.||||+|+..+ +.+++++|++ .|+
T Consensus 4 ~~d~~g~t~L~~A~~----------~~~~~~~~~Ll~~g-----~~~~~~d~~g~t~L~~A~~~~-~~~~~~~Ll~-~g~ 66 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAK----------NGHAEEVKKLLSKG-----ADVNARSKDGNTPLHLAAKNG-HAEIVKLLLA-KGA 66 (115)
T ss_dssp CCSCSSCCHHHHHHH----------HTCHHHHHHHTTTT-----CCSSCCCSSSCCTTHHHHTTT-CHHHHHHHTT-TTC
T ss_pred ccCCCCCCHHHHHHH----------cCCHHHHHHHHHcC-----CCCCCcCCCCCCHHHHHHHcC-cHHHHHHHHH-cCC
Confidence 568899999999999 59999999999999 669999999999999999999 9999999999 999
Q ss_pred CcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCCccHH
Q 048228 328 NLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVARNAI 377 (629)
Q Consensus 328 dvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G~TpL 377 (629)
+++.+|..|.||||+|+..++.+ ++++|+++|+++|.++..|.||-
T Consensus 67 ~~~~~d~~g~tpl~~A~~~~~~~----~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 67 DVNARSKDGNTPEHLAKKNGHHE----IVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp CTTCCCTTCCCTTHHHHTTTCHH----HHHHHHTTSSSHHHHSCCCC---
T ss_pred CCcccCCCCCCHHHHHHHCCCHH----HHHHHHHcCCCCCcCCccccccc
Confidence 99999999999999999999988 99999999999999999999883
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.69 E-value=4.9e-17 Score=139.92 Aligned_cols=93 Identities=24% Similarity=0.281 Sum_probs=84.7
Q ss_pred hccCCcCCchHHHHHHHcCCcHHHHHHHhcCCCCCcccCCCCCCcHHHHHHhCCCCchHHHHHHHHHHcCCCCCCCCCCC
Q 048228 294 INVTNNNGRTALHLAVSENIQCNLVELLMTVPSINLNIQDGEGMTPLDLLKQHPRSASSEILIKQLISAGGISNCQDNVA 373 (629)
Q Consensus 294 in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~~gadvn~~d~~G~TpLh~A~~~~~~~~~~~lv~~Ll~~Gadvn~~d~~G 373 (629)
....|.+|.||||+|+..+ +.+++++|++ .|+++|.+|..|+||||+|+..++.+ ++++|+++|++++.+|..|
T Consensus 17 ~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~-~g~~i~~~d~~g~tpLh~A~~~~~~~----~v~~Ll~~ga~~~~~d~~g 90 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAG-QDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLE----VVKLLLEAGADVXAQDKFG 90 (110)
T ss_dssp -----CCHHHHHHHHHHHT-CHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTS
T ss_pred ccccCCccchHHHHHHHcC-CHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCccccccCC
Confidence 5667889999999999999 9999999999 99999999999999999999999988 9999999999999999999
Q ss_pred ccHHHHHHHhCCCCCCCCCCCChhhHHHH
Q 048228 374 RNAIACHLKGQGIGVSPGSSFRVPDAEIF 402 (629)
Q Consensus 374 ~TpL~~A~~~~~~~~~~~~~~~~~~v~~L 402 (629)
+||||+|+..+ +.+++++|
T Consensus 91 ~tpl~~A~~~~----------~~~~~~~L 109 (110)
T 2zgd_A 91 KTAFDISIDNG----------NEDLAEIL 109 (110)
T ss_dssp CCHHHHHHHHT----------CHHHHHHH
T ss_pred CcHHHHHHHcC----------CHHHHHHh
Confidence 99999999987 68999887
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.66 E-value=1.7e-16 Score=136.49 Aligned_cols=89 Identities=16% Similarity=0.113 Sum_probs=70.3
Q ss_pred CCCCCcHHHHHHHCCCHHHHHHHHHhCCCchhhhhhhHhhhhccccCCCCcHHHHHHhcCcHHHHHHHhhcccccCCCcc
Q 048228 16 QWWYASPIDFAAANGHYELVKELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSSVARKLLHDCETKKGHNSL 95 (629)
Q Consensus 16 ~~~g~TpLh~Aa~~G~~~~v~~LL~~gad~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~~ 95 (629)
+-.|.||||+||..|+.++|++|++.|++++.++ ..|.||||+|+..++.+++++|++ +|++++
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d------------~~g~tpLh~A~~~~~~~~v~~Ll~----~ga~~~ 84 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKD------------KNGSTPLHLAARNGHLEVVKLLLE----AGADVX 84 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC------------TTCCCHHHHHHHTTCHHHHHHHHH----TTCCTT
T ss_pred CCccchHHHHHHHcCCHHHHHHHHHcCCCCCccC------------CCCCCHHHHHHHcCCHHHHHHHHH----cCCCcc
Confidence 3346699999999999999999999999887643 457777777777777777777777 777777
Q ss_pred cccCCCChHHHHHHHcCCHHHHHHH
Q 048228 96 IRAGYGGWLLYTAASAGDVRFVKEL 120 (629)
Q Consensus 96 ~~d~~g~tpLh~A~~~g~~~~v~~L 120 (629)
.+|..|.||||+|+..|+.+++++|
T Consensus 85 ~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 85 AQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred ccccCCCcHHHHHHHcCCHHHHHHh
Confidence 7777777777777777777777765
No 115
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=59.92 E-value=13 Score=39.65 Aligned_cols=97 Identities=10% Similarity=0.013 Sum_probs=59.8
Q ss_pred cCCCcccccCCCChHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCCHHHHHHHHcCCHH----HHHHHHHcCCCCccc
Q 048228 90 KGHNSLIRAGYGGWLLYTAASAGDVRFVKELLQRDPLLVFGEGEYGVTDILYAAARSKNSE----VFRLLLDNAVAPRCC 165 (629)
Q Consensus 90 ~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~LL~~g~~~~~~~d~~g~tpL~~AA~~~g~~~----iv~~Ll~~Ga~~~~~ 165 (629)
.|..++... -.+.|...+..|+.+.+..|++.-...-...|..-++.|+.++++.|..+ +++.+.+.|..|+..
T Consensus 99 ~G~~Pd~~t--yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ 176 (501)
T 4g26_A 99 DKVVPNEAT--FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP 176 (501)
T ss_dssp TTCCCCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred hCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence 566665442 23457777889998777766653111001124444567888888888875 445556678877744
Q ss_pred cCCCCchhhhhccchhHHhhhccchHHHHHHhcCCHHHHHHHHh
Q 048228 166 LSSGGEFEEKLSDSYSVFKWEMMNRAVHAVARGGNLDILRQLLG 209 (629)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~ 209 (629)
+ -.+.|...+..|+.+-+..+++
T Consensus 177 t---------------------y~~Li~~~~~~g~~d~A~~ll~ 199 (501)
T 4g26_A 177 E---------------------LAALLKVSMDTKNADKVYKTLQ 199 (501)
T ss_dssp H---------------------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred H---------------------HHHHHHHHhhCCCHHHHHHHHH
Confidence 2 1366777788888765555544
No 116
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=31.77 E-value=30 Score=22.26 Aligned_cols=19 Identities=37% Similarity=0.405 Sum_probs=15.2
Q ss_pred HHHHHHHcCCHHHHHHHHh
Q 048228 104 LLYTAASAGDVRFVKELLQ 122 (629)
Q Consensus 104 pLh~A~~~g~~~~v~~LL~ 122 (629)
-++.||..|+.+.|+.|-.
T Consensus 16 qiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 16 QMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHH
Confidence 3788999999999887743
No 117
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=29.72 E-value=79 Score=32.17 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=45.2
Q ss_pred HHHHCCCHHHHHHHHHhCCCchhhhhhhHhhhhccccCCCCcHHHHHHhcCcHHHHHHHhhcccccCCCcccccCCCChH
Q 048228 25 FAAANGHYELVKELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSSVARKLLHDCETKKGHNSLIRAGYGGWL 104 (629)
Q Consensus 25 ~Aa~~G~~~~v~~LL~~gad~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~~~~~i~~lL~~~~~~~g~~~~~~d~~g~tp 104 (629)
+.+..|+...|+.-|..|.|++-+.|.. . +.+|.. .+ . -..|.|.
T Consensus 28 ~gv~e~~~~~ve~y~~~gg~~~r~lt~~----------------e----------~~lln~------~~--a-f~~g~tl 72 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYKSSGGDIARQLTAD----------------E----------VRLLNR------PS--A-FDVGYTL 72 (454)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCCCHH----------------H----------HHHHCC------TT--T-CCTTCCH
T ss_pred HHHHcCChhHHHHHHhcCCchhcccCHH----------------H----------HHHhCC------Cc--c-cccCchh
Confidence 4456799999999999999987654331 1 222322 11 1 3348899
Q ss_pred HHHHHHcCCHHHHHHHHhc
Q 048228 105 LYTAASAGDVRFVKELLQR 123 (629)
Q Consensus 105 Lh~A~~~g~~~~v~~LL~~ 123 (629)
+|+|++..+-+++..|+..
T Consensus 73 vhlair~~r~~~l~~ll~~ 91 (454)
T 3zrh_A 73 VHLAIRFQRQDMLAILLTE 91 (454)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHhhhc
Confidence 9999999999999999873
No 118
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=21.65 E-value=90 Score=32.96 Aligned_cols=111 Identities=13% Similarity=0.074 Sum_probs=65.3
Q ss_pred HHHHHHHHHhCCCchhhhhhhHhhhhccccCCCCcHHHHHHhcCcH-HHHHHHhhcccccCCCcccccCCCChHHHHHHH
Q 048228 32 YELVKELLHLDTNLLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSS-VARKLLHDCETKKGHNSLIRAGYGGWLLYTAAS 110 (629)
Q Consensus 32 ~~~v~~LL~~gad~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~~~~-~i~~lL~~~~~~~g~~~~~~d~~g~tpLh~A~~ 110 (629)
.++++.+.+.|..++... ..+.+...++.|.. ++.+++.+ -...|..++... ..+.|...+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~t--------------yn~lI~~~~~~g~~~~A~~l~~~-M~~~g~~Pd~~t--yn~lI~~~~~ 152 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEAT--------------FTNGARLAVAKDDPEMAFDMVKQ-MKAFGIQPRLRS--YGPALFGFCR 152 (501)
T ss_dssp HHHHHHHHHTTCCCCHHH--------------HHHHHHHHHHHTCHHHHHHHHHH-HHHTTCCCCHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHH--------------HHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCCccce--ehHHHHHHHH
Confidence 356777777887776532 22356666666654 34444432 122566665442 2345666788
Q ss_pred cCCHHHHHHHHh----cCCCccccCCCCCCCHHHHHHHHcCCHHHHHHHHH----cCCCCc
Q 048228 111 AGDVRFVKELLQ----RDPLLVFGEGEYGVTDILYAAARSKNSEVFRLLLD----NAVAPR 163 (629)
Q Consensus 111 ~g~~~~v~~LL~----~g~~~~~~~d~~g~tpL~~AA~~~g~~~iv~~Ll~----~Ga~~~ 163 (629)
.|+.+-+..+++ .|-. .|..-++.|+.++++.|+.+-+.-|++ .|..|+
T Consensus 153 ~g~~~~A~~l~~~M~~~G~~----Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 153 KGDADKAYEVDAHMVESEVV----PEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp TTCHHHHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred CCCHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 999876666654 3432 344456678888889999866555554 455444
No 119
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=20.09 E-value=22 Score=22.86 Aligned_cols=6 Identities=83% Similarity=1.608 Sum_probs=3.9
Q ss_pred cccccc
Q 048228 599 LCFGAQ 604 (629)
Q Consensus 599 ~~~~~~ 604 (629)
-|||||
T Consensus 35 acfgaq 40 (48)
T 1ehs_A 35 ACFGAQ 40 (48)
T ss_dssp TTTTTH
T ss_pred cccchh
Confidence 477766
Done!