BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048232
         (455 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P42308|CITN_BACSU Citrate transporter OS=Bacillus subtilis (strain 168) GN=citN PE=1
           SV=2
          Length = 426

 Score = 38.9 bits (89), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 14/104 (13%)

Query: 222 PREDKSDLEILRFNLSWKNILLLIAVWASFLLIQIVKNDVAPCGIWYWALFFSQFPIALG 281
           P  D     + R  L W N+LL +A+ A+ +        + P  +    LF + F +AL 
Sbjct: 212 PSSDPEAAPLKRPALQWFNLLLTVALMAALI------TSLLPLPV----LFMTAFAVALM 261

Query: 282 VFGYEAVKLYTEHKKRTQYICGASIEWTPMHIAFCAFCGILGGT 325
           V  Y  VK   E +KR     G ++    M  A   F GIL GT
Sbjct: 262 V-NYPNVK---EQQKRISAHAGNALNVVSMVFAAGIFTGILSGT 301


>sp|P54437|YRKJ_BACSU UPF0721 transmembrane protein YrkJ OS=Bacillus subtilis (strain
           168) GN=yrkJ PE=3 SV=1
          Length = 261

 Score = 36.2 bits (82), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 9/74 (12%)

Query: 293 EHKKRTQYICGASIEWTPMHIAFCAFCGILGGTVGGLLGSGGGFILGPLLLEIGVIPQVA 352
           EH +  + I     +W    +AF     I+GG V G+LG+GG FIL P++L I  IP   
Sbjct: 134 EHSEDKEVIFN---KWLASSLAF-----IIGG-VSGILGAGGAFILVPIMLSILNIPVRV 184

Query: 353 SATATFVMMFSSSL 366
           +  ++  + F SS+
Sbjct: 185 TVASSLAITFLSSI 198


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.327    0.142    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,415,916
Number of Sequences: 539616
Number of extensions: 6410805
Number of successful extensions: 25993
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 25945
Number of HSP's gapped (non-prelim): 58
length of query: 455
length of database: 191,569,459
effective HSP length: 121
effective length of query: 334
effective length of database: 126,275,923
effective search space: 42176158282
effective search space used: 42176158282
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)