Query 048232
Match_columns 455
No_of_seqs 256 out of 1814
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:39:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048232.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048232hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10621 hypothetical protein; 100.0 5.6E-29 1.2E-33 245.1 29.3 234 59-417 10-244 (266)
2 COG0730 Predicted permeases [G 100.0 3.5E-28 7.6E-33 238.2 30.1 238 59-417 5-244 (258)
3 PF01925 TauE: Sulfite exporte 100.0 1.6E-26 3.4E-31 223.3 23.4 229 65-418 2-235 (240)
4 PRK10621 hypothetical protein; 99.3 2.7E-11 5.8E-16 119.5 15.9 103 314-417 13-115 (266)
5 COG0730 Predicted permeases [G 99.3 5.7E-11 1.2E-15 116.5 15.6 105 313-417 7-111 (258)
6 PF01925 TauE: Sulfite exporte 99.0 6E-09 1.3E-13 100.6 13.3 100 317-417 2-101 (240)
7 PF04018 DUF368: Domain of unk 91.6 15 0.00033 36.2 25.9 81 314-414 143-223 (257)
8 PF02673 BacA: Bacitracin resi 90.5 19 0.00042 35.5 21.4 88 93-180 29-126 (259)
9 PTZ00370 STEVOR; Provisional 71.0 30 0.00065 34.5 9.3 46 146-191 242-290 (296)
10 PRK00281 undecaprenyl pyrophos 68.2 1.3E+02 0.0028 29.8 20.8 94 83-179 28-129 (268)
11 KOG2881 Predicted membrane pro 65.8 53 0.0012 32.5 9.6 52 136-187 104-155 (294)
12 PF04066 MrpF_PhaF: Multiple r 65.1 37 0.00079 25.1 6.7 54 349-402 2-55 (55)
13 PF07698 7TM-7TMR_HD: 7TM rece 63.8 1.2E+02 0.0026 27.9 15.0 57 339-407 72-128 (194)
14 PLN00151 potassium transporter 57.4 1.1E+02 0.0025 35.1 11.7 89 82-176 466-569 (852)
15 PF02990 EMP70: Endomembrane p 54.9 79 0.0017 34.4 9.9 31 370-400 320-350 (521)
16 PF05232 BTP: Bacterial Transm 54.3 35 0.00076 26.4 5.2 41 81-121 16-56 (67)
17 COG1968 BacA Undecaprenyl pyro 52.9 2.5E+02 0.0054 28.0 20.6 64 101-164 43-113 (270)
18 COG2119 Predicted membrane pro 52.2 56 0.0012 30.7 7.0 50 133-182 135-184 (190)
19 COG2119 Predicted membrane pro 52.0 2.1E+02 0.0045 26.9 15.0 49 133-181 36-84 (190)
20 PF01169 UPF0016: Uncharacteri 52.0 43 0.00094 26.7 5.5 43 133-175 35-77 (78)
21 TIGR02840 spore_YtaF putative 51.1 2.2E+02 0.0048 26.9 19.7 52 133-184 28-83 (206)
22 COG2851 CitM H+/citrate sympor 49.6 3.4E+02 0.0073 28.6 14.4 39 393-431 391-430 (433)
23 TIGR00893 2A0114 d-galactonate 45.7 3E+02 0.0064 26.8 15.2 18 143-160 129-146 (399)
24 PLN00148 potassium transporter 44.2 2.1E+02 0.0046 32.8 11.2 88 83-176 390-492 (785)
25 PRK12600 putative monovalent c 43.1 1.4E+02 0.0031 24.7 7.5 55 348-402 30-84 (94)
26 PRK10263 DNA translocase FtsK; 42.8 1.9E+02 0.0042 35.0 11.0 21 141-161 140-160 (1355)
27 PLN00150 potassium ion transpo 41.9 2.7E+02 0.0059 31.9 11.6 88 83-176 407-509 (779)
28 PF11833 DUF3353: Protein of u 40.9 1.5E+02 0.0033 27.9 8.2 44 133-176 138-190 (194)
29 PF04172 LrgB: LrgB-like famil 40.5 3.4E+02 0.0074 26.0 11.6 65 337-403 93-158 (215)
30 PRK06161 putative monovalent c 39.7 1.6E+02 0.0035 24.1 7.2 59 344-402 25-84 (89)
31 TIGR00892 2A0113 monocarboxyla 39.6 2.1E+02 0.0045 30.0 10.1 17 143-159 380-396 (455)
32 COG3619 Predicted membrane pro 39.5 2.8E+02 0.0061 26.8 10.0 36 130-165 166-201 (226)
33 PRK12604 putative monovalent c 38.5 2E+02 0.0042 23.4 7.4 54 348-401 28-81 (84)
34 PRK12599 putative monovalent c 38.4 1.9E+02 0.0042 23.8 7.5 55 348-402 32-86 (91)
35 PLN00149 potassium transporter 37.2 4.1E+02 0.0089 30.5 12.1 89 82-176 393-496 (779)
36 COG4280 Predicted membrane pro 36.6 2.4E+02 0.0052 27.0 8.5 34 156-189 58-91 (236)
37 PRK12612 putative monovalent c 36.5 2.1E+02 0.0045 23.3 7.3 55 347-401 29-83 (87)
38 PRK04288 antiholin-like protei 36.4 4.1E+02 0.009 25.8 13.0 79 316-403 95-174 (232)
39 PRK01844 hypothetical protein; 34.9 1E+02 0.0023 24.3 5.0 27 384-410 9-35 (72)
40 PRK08381 putative monovalent c 34.1 2.5E+02 0.0055 23.0 7.4 54 348-401 31-84 (87)
41 COG1288 Predicted membrane pro 34.0 3.7E+02 0.0081 28.8 10.4 26 83-109 162-187 (481)
42 PRK12657 putative monovalent c 32.6 2.5E+02 0.0054 23.6 7.4 55 348-402 34-88 (100)
43 PF11368 DUF3169: Protein of u 30.9 5E+02 0.011 25.1 13.7 26 134-159 8-33 (248)
44 PRK11588 hypothetical protein; 29.9 7.6E+02 0.017 26.9 13.7 11 405-415 476-486 (506)
45 PF02705 K_trans: K+ potassium 29.9 3.9E+02 0.0086 29.3 10.2 38 138-175 388-425 (534)
46 PRK00523 hypothetical protein; 29.9 1.4E+02 0.003 23.7 5.0 24 386-409 12-35 (72)
47 PF13515 FUSC_2: Fusaric acid 29.8 3.2E+02 0.007 22.7 8.0 23 142-164 40-62 (128)
48 TIGR01478 STEVOR variant surfa 29.4 76 0.0016 31.7 4.3 45 146-190 246-293 (295)
49 COG2035 Predicted membrane pro 28.5 6.1E+02 0.013 25.4 26.0 72 65-159 8-79 (276)
50 TIGR03434 ADOP Acidobacterial 28.4 6.3E+02 0.014 28.5 12.3 28 316-343 321-348 (803)
51 COG3180 AbrB Putative ammonia 27.3 7.2E+02 0.016 25.8 11.1 95 314-430 12-106 (352)
52 PF01169 UPF0016: Uncharacteri 27.1 2.4E+02 0.0051 22.5 6.1 34 381-414 39-72 (78)
53 TIGR00659 conserved hypothetic 26.9 5.9E+02 0.013 24.7 18.6 65 337-403 103-168 (226)
54 PRK07948 putative monovalent c 25.8 3.4E+02 0.0073 22.1 6.9 54 348-401 29-82 (86)
55 TIGR02230 ATPase_gene1 F0F1-AT 25.7 1.6E+02 0.0035 24.8 5.0 25 138-162 49-73 (100)
56 TIGR02185 Trep_Strep conserved 25.7 5.5E+02 0.012 23.9 9.8 31 379-409 158-188 (189)
57 PRK10263 DNA translocase FtsK; 24.7 1.1E+03 0.023 29.1 13.1 18 317-334 66-83 (1355)
58 COG1784 Predicted membrane pro 24.6 8.3E+02 0.018 25.6 16.4 127 310-437 215-363 (395)
59 PF07760 DUF1616: Protein of u 24.0 1.6E+02 0.0034 29.4 5.6 87 80-176 63-152 (287)
60 PTZ00359 hypothetical protein; 24.0 8.8E+02 0.019 25.7 11.4 17 4-20 179-195 (443)
61 PF05052 MerE: MerE protein; 23.8 2.4E+02 0.0052 22.4 5.2 32 143-177 36-67 (75)
62 PRK12603 putative monovalent c 23.0 4.2E+02 0.0092 21.6 7.6 55 347-401 26-81 (86)
63 COG2212 MnhF Multisubunit Na+/ 22.9 3.4E+02 0.0074 22.4 6.3 54 348-401 31-84 (89)
64 TIGR00908 2A0305 ethanolamine 22.5 4.9E+02 0.011 27.1 9.3 11 121-131 370-380 (442)
65 PRK09412 anaerobic C4-dicarbox 21.5 9.8E+02 0.021 25.3 12.1 23 84-106 110-135 (433)
66 PF09527 ATPase_gene1: Putativ 21.2 3.3E+02 0.0071 19.7 7.0 43 137-179 6-49 (55)
67 PF07172 GRP: Glycine rich pro 20.9 1.6E+02 0.0034 24.6 4.1 11 3-13 1-11 (95)
68 PF13829 DUF4191: Domain of un 20.4 3.5E+02 0.0076 26.2 6.9 48 131-182 25-72 (224)
69 PF09605 Trep_Strep: Hypotheti 20.2 7E+02 0.015 23.1 10.0 32 378-409 154-185 (186)
70 PRK10711 hypothetical protein; 20.2 8.1E+02 0.018 23.8 12.6 79 316-403 90-169 (231)
71 PF04279 IspA: Intracellular s 20.0 6.9E+02 0.015 23.0 12.4 17 160-176 77-93 (176)
No 1
>PRK10621 hypothetical protein; Provisional
Probab=99.97 E-value=5.6e-29 Score=245.11 Aligned_cols=234 Identities=19% Similarity=0.213 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHHHHHhhhccccchhhhHHHHHHHHhcCChhhHhHhHHHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHH
Q 048232 59 WRIVLATVIGFLGSACGTVGGVGGGGIFVPMLTLIVGFDTKSAAAISKCMIMGASASSVWYNLRVPHPTKDVPILDYDLA 138 (455)
Q Consensus 59 ~~~l~~~iig~~ag~is~~~GiGGG~i~vP~L~~~~g~~~~~A~~ts~~~i~~~s~~~~~~~~~~~~p~~~~p~Id~~~~ 138 (455)
+..++.+++|+++|+++++.| |||.+.+|++.. +|+|+++|++||.+.++.+++++.+.|.|++| +||+.+
T Consensus 10 ~~~~~l~~~g~~aG~l~gl~G-GGg~i~vP~L~~-~g~~~~~Av~tsl~~~~~~~~~~~~~~~~~~~-------v~~~~~ 80 (266)
T PRK10621 10 LLLGVLFFVAMLAGFIDSIAG-GGGLLTIPALLA-AGMSPAQALATNKLQACGGSFSASLYFIRRKV-------VNLADQ 80 (266)
T ss_pred HHHHHHHHHHHHHHHHhhhcc-ccHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCHHHH
Confidence 455677788999999999999 999999999975 79999999999999999999998888878776 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhcccccccccccccC
Q 048232 139 LLFQPMLLLGITVGVALSVVFPYWLITVLIIILFLGTSSRSFFKGIQMWKEETDLNQELAKQNETLVNSHGELLIDAEYE 218 (455)
Q Consensus 139 ~~l~~~~l~Ga~lGa~l~~~lp~~~l~~l~~ilLl~~~~~~~~k~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (455)
.++.+++++|+.+|+++..++|++.++.+++++++..+.+++++. ++ ++ + + +.+
T Consensus 81 ~~l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~~----~~-----~~--------~--------~-~~~ 134 (266)
T PRK10621 81 KLNIAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLMP----KL-----GE--------E--------D-RQR 134 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC----cc-----cc--------c--------c-ccc
Confidence 999999999999999999999999999999999998888765431 00 00 0 0 000
Q ss_pred CCCCCCcchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhhhhccchhhhhhhhHHHHHHhhhhhhh
Q 048232 219 PLVPREDKSDLEILRFNLSWKNILLLIAVWASFLLIQIVKNDVAPCGIWYWALFFSQFPIALGVFGYEAVKLYTEHKKRT 298 (455)
Q Consensus 219 ~l~~~~~~~~~~~~~~~~~w~~i~~l~~~~~~~~~~~~~r~~~~~cs~~yw~~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 298 (455)
+
T Consensus 135 ~------------------------------------------------------------------------------- 135 (266)
T PRK10621 135 R------------------------------------------------------------------------------- 135 (266)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred ccccCCccccchhhHHHHHHHHHHHHHHhhhcccchhhhHHHHH-HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Q 048232 299 QYICGASIEWTPMHIAFCAFCGILGGTVGGLLGSGGGFILGPLL-LEIGVIPQVASATATFVMMFSSSLSVVEFYLLKRF 377 (455)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~g~~aG~~sGllGiGGG~il~P~L-l~~Gi~p~~A~ATs~~~~~fts~~s~i~~~~~G~i 377 (455)
+. +.......|+.+|+++|++|+|||.+++|.+ ..++.|+++|++|+++..++++..+...|...|.+
T Consensus 136 ---------~~--~~~~~~~~G~~~G~lsG~~G~GgG~~~v~~l~~~~~~~~~~a~~ts~~~~~~~~~~~~~~~~~~G~v 204 (266)
T PRK10621 136 ---------LY--GLPFALIAGGCVGFYDGFFGPGAGSFYALAFVTLCGFNLAKATAHAKVLNATSNIGGLLLFILGGKV 204 (266)
T ss_pred ---------cc--chHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCee
Confidence 00 0011345789999999999999999999877 56799999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 048232 378 PIPYALYLMAVSVLAGFWGQYFIRKLVAILKRASLIVFLL 417 (455)
Q Consensus 378 ~~~~al~l~~~~~vGa~iG~~l~~~i~~~~~r~~~~v~ll 417 (455)
||..++.+.+++++|+++|+++.+|++++..|+.+..+++
T Consensus 205 ~~~~~l~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~ll~ 244 (266)
T PRK10621 205 IWATGFVMLVGQFLGARLGARLVLSKGQKLIRPMIVIVSA 244 (266)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCchHhHHHHHHHHH
Confidence 9999999999999999999999999999999998876553
No 2
>COG0730 Predicted permeases [General function prediction only]
Probab=99.97 E-value=3.5e-28 Score=238.19 Aligned_cols=238 Identities=27% Similarity=0.397 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHHHHHhhhccccchhhhHHHHHHHHhcCChhhHhHhHHHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHH
Q 048232 59 WRIVLATVIGFLGSACGTVGGVGGGGIFVPMLTLIVGFDTKSAAAISKCMIMGASASSVWYNLRVPHPTKDVPILDYDLA 138 (455)
Q Consensus 59 ~~~l~~~iig~~ag~is~~~GiGGG~i~vP~L~~~~g~~~~~A~~ts~~~i~~~s~~~~~~~~~~~~p~~~~p~Id~~~~ 138 (455)
...++.+.+|+++|++++++|+|||.+.+|.+.. +++|++.|.+++++....+++.+.+.|+|++| +||+.+
T Consensus 5 ~~~~~~~~~g~l~g~i~g~~G~Ggg~i~~P~L~~-~~~~~~~a~~t~l~~~~~~~~~~~~~~~k~~~-------v~~~~~ 76 (258)
T COG0730 5 MTLLLLFLVGLLAGFISGLAGGGGGLLTVPALLL-LGLPPAAALGTSLLAVLFTSLSSALAYLKRGN-------VDWKLA 76 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------ccHHHH
Confidence 3566788999999999999999999999999998 56999999999999999999999999888886 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhcccccccccccccC
Q 048232 139 LLFQPMLLLGITVGVALSVVFPYWLITVLIIILFLGTSSRSFFKGIQMWKEETDLNQELAKQNETLVNSHGELLIDAEYE 218 (455)
Q Consensus 139 ~~l~~~~l~Ga~lGa~l~~~lp~~~l~~l~~ilLl~~~~~~~~k~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (455)
..+.+++++|+.+|+++..++|++.++..+++++++.+.+++++..+ ++ +| +++ +
T Consensus 77 ~~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~----~~---~~-----------------~~~-~ 131 (258)
T COG0730 77 LILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPRL----AK---AE-----------------DRA-A 131 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhccc----cc---cc-----------------ccc-c
Confidence 99999999999999999999999999999999999999998876221 00 00 000 0
Q ss_pred CCCCCCcchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhhhhccchhhhhhhhHHHHHHhhhhhhh
Q 048232 219 PLVPREDKSDLEILRFNLSWKNILLLIAVWASFLLIQIVKNDVAPCGIWYWALFFSQFPIALGVFGYEAVKLYTEHKKRT 298 (455)
Q Consensus 219 ~l~~~~~~~~~~~~~~~~~w~~i~~l~~~~~~~~~~~~~r~~~~~cs~~yw~~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 298 (455)
+. .|
T Consensus 132 ~~---------------~~------------------------------------------------------------- 135 (258)
T COG0730 132 RL---------------RP------------------------------------------------------------- 135 (258)
T ss_pred cc---------------Cc-------------------------------------------------------------
Confidence 00 00
Q ss_pred ccccCCccccchhhHHHHHHHHHHHHHHhhhcccchhhhHHHHHH-HcCCChHHHHHHHHHHHHHHHHHHHHHHHH-cCc
Q 048232 299 QYICGASIEWTPMHIAFCAFCGILGGTVGGLLGSGGGFILGPLLL-EIGVIPQVASATATFVMMFSSSLSVVEFYL-LKR 376 (455)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~g~~aG~~sGllGiGGG~il~P~Ll-~~Gi~p~~A~ATs~~~~~fts~~s~i~~~~-~G~ 376 (455)
| .......+|+.+|+++|++|+|||...+|.+. ..+.|.+++++|+.+.+++++..+...|.. .|+
T Consensus 136 ---------~---~~~~~~~~g~~~G~~sG~~G~GgG~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~~~~g~ 203 (258)
T COG0730 136 ---------L---LFALALLIGFLAGFLSGLFGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFALGA 203 (258)
T ss_pred ---------c---hhHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 0 11224678899999999999999999999994 678999999999999999999999999999 799
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 048232 377 FPIPYALYLMAVSVLAGFWGQYFIRKLVAILKRASLIVFLL 417 (455)
Q Consensus 377 i~~~~al~l~~~~~vGa~iG~~l~~~i~~~~~r~~~~v~ll 417 (455)
+||..+..+.+++++|+++|+++.+|++++..|+.+..+++
T Consensus 204 ~~~~~~~~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~~~~ 244 (258)
T COG0730 204 VDWPLALLLAVGSILGAYLGARLARRLSPKVLRRLFALVLL 244 (258)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999889999999999999999999999999998876554
No 3
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=99.95 E-value=1.6e-26 Score=223.26 Aligned_cols=229 Identities=28% Similarity=0.417 Sum_probs=195.2
Q ss_pred HHHHHHHHHhhhccccchhhhHHHHHHHHhcCChhhHhHhHHHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHH
Q 048232 65 TVIGFLGSACGTVGGVGGGGIFVPMLTLIVGFDTKSAAAISKCMIMGASASSVWYNLRVPHPTKDVPILDYDLALLFQPM 144 (455)
Q Consensus 65 ~iig~~ag~is~~~GiGGG~i~vP~L~~~~g~~~~~A~~ts~~~i~~~s~~~~~~~~~~~~p~~~~p~Id~~~~~~l~~~ 144 (455)
+++++++|++.+..|.|||.+.+|++.. + +|+++|++++......++..+.+.|+|+++ +||+...++.++
T Consensus 2 ~~~~~~ag~v~g~~G~g~g~i~~p~l~~-~-l~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------i~~~~~~~~~~~ 72 (240)
T PF01925_consen 2 LLIGFLAGFVSGITGFGGGLIAVPILIL-F-LPPKQAVATSLFINLFTSLIAALRHRKHGN-------IDWKIVLPLIIG 72 (240)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHH-H-cCHHHHHHHHHHHHHHHHHHHHHHHHHccc-------cchhhhhhhhhH
Confidence 4678999999999999999999999998 5 899999999999999999999998877654 999999999999
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhcccccccccccccCCCCCCC
Q 048232 145 LLLGITVGVALSVVFPYWLITVLIIILFLGTSSRSFFKGIQMWKEETDLNQELAKQNETLVNSHGELLIDAEYEPLVPRE 224 (455)
Q Consensus 145 ~l~Ga~lGa~l~~~lp~~~l~~l~~ilLl~~~~~~~~k~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 224 (455)
+++|+.+|+++..++|++.++.+++++++..+.+++.+..+ ++ . + +.+.
T Consensus 73 ~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~~~~~---------~~-~---------------~-~~~~----- 121 (240)
T PF01925_consen 73 ALIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLLKKRR---------KT-P---------------K-SRSS----- 121 (240)
T ss_pred hHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhcccc---------cc-c---------------c-cccc-----
Confidence 99999999999999999999999999999999887654110 00 0 0 0000
Q ss_pred cchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhhhhhhccchhhhhhhhHHHHHHhhhhhhhccccCC
Q 048232 225 DKSDLEILRFNLSWKNILLLIAVWASFLLIQIVKNDVAPCGIWYWALFFSQFPIALGVFGYEAVKLYTEHKKRTQYICGA 304 (455)
Q Consensus 225 ~~~~~~~~~~~~~w~~i~~l~~~~~~~~~~~~~r~~~~~cs~~yw~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 304 (455)
+
T Consensus 122 ---~---------------------------------------------------------------------------- 122 (240)
T PF01925_consen 122 ---P---------------------------------------------------------------------------- 122 (240)
T ss_pred ---c----------------------------------------------------------------------------
Confidence 0
Q ss_pred ccccchhhHHHHHHHHHH-HHHHhhhcccchhhhHHHHHHH-cCCChHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHH
Q 048232 305 SIEWTPMHIAFCAFCGIL-GGTVGGLLGSGGGFILGPLLLE-IGVIPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYA 382 (455)
Q Consensus 305 ~~~~~~~~~~~~~~~g~~-aG~~sGllGiGGG~il~P~Ll~-~Gi~p~~A~ATs~~~~~fts~~s~i~~~~~G~i~~~~a 382 (455)
.+......+|.+ +|+++|++|+|||.+.+|.+.+ .|.|++++.||+.++.++++..+...|...|.+|++..
T Consensus 123 ------~~~~~~~~~g~~~~G~~~G~~g~ggg~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~~~~~~~~~g~~~~~~~ 196 (240)
T PF01925_consen 123 ------PKRWLLFLLGGLFIGFLSGLFGIGGGPLLVPLLLYLFGLDPKKARATSAFFFFFSSVAALISFLILGDVDWPML 196 (240)
T ss_pred ------cchhhhhhhhHHHhhHHHhhhhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Confidence 000112344555 9999999999999999999974 79999999999999999999999999999999999977
Q ss_pred HH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 048232 383 LY---LMAVSVLAGFWGQYFIRKLVAILKRASLIVFLLS 418 (455)
Q Consensus 383 l~---l~~~~~vGa~iG~~l~~~i~~~~~r~~~~v~ll~ 418 (455)
.. +.+++++|+++|+++.+|++++..|+.+.++++.
T Consensus 197 ~~~~~~~~~~~~G~~lG~~~~~~i~~~~~~~~~~~ll~~ 235 (240)
T PF01925_consen 197 LLSLILLPGAFLGAFLGAKLARKIPQKVFRRIFLILLLL 235 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 76 9999999999999999999999999988776653
No 4
>PRK10621 hypothetical protein; Provisional
Probab=99.34 E-value=2.7e-11 Score=119.52 Aligned_cols=103 Identities=22% Similarity=0.320 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHhhhcccchhhhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHH
Q 048232 314 AFCAFCGILGGTVGGLLGSGGGFILGPLLLEIGVIPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLMAVSVLAG 393 (455)
Q Consensus 314 ~~~~~~g~~aG~~sGllGiGGG~il~P~Ll~~Gi~p~~A~ATs~~~~~fts~~s~i~~~~~G~i~~~~al~l~~~~~vGa 393 (455)
......|+++|+++|+.| |||.+.+|++..+|+||++|++|+.+.++.++..+...|...+++||+....+.+++++|+
T Consensus 13 ~~l~~~g~~aG~l~gl~G-GGg~i~vP~L~~~g~~~~~Av~tsl~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~l~Ga 91 (266)
T PRK10621 13 GVLFFVAMLAGFIDSIAG-GGGLLTIPALLAAGMSPAQALATNKLQACGGSFSASLYFIRRKVVNLADQKLNIAMTFVGS 91 (266)
T ss_pred HHHHHHHHHHHHHhhhcc-ccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 456678999999999999 9999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 048232 394 FWGQYFIRKLVAILKRASLIVFLL 417 (455)
Q Consensus 394 ~iG~~l~~~i~~~~~r~~~~v~ll 417 (455)
.+|..+..+++++..|..+.++++
T Consensus 92 ~~G~~l~~~l~~~~l~~~~~~~ll 115 (266)
T PRK10621 92 MSGALLVQYVQADILRQILPILVI 115 (266)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999987765543
No 5
>COG0730 Predicted permeases [General function prediction only]
Probab=99.30 E-value=5.7e-11 Score=116.45 Aligned_cols=105 Identities=28% Similarity=0.451 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHhhhcccchhhhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHH
Q 048232 313 IAFCAFCGILGGTVGGLLGSGGGFILGPLLLEIGVIPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLMAVSVLA 392 (455)
Q Consensus 313 ~~~~~~~g~~aG~~sGllGiGGG~il~P~Ll~~Gi~p~~A~ATs~~~~~fts~~s~i~~~~~G~i~~~~al~l~~~~~vG 392 (455)
.....+.|+++|+++|++|+|||.+.+|.++.+++||++|.+|+.....+++..+...|...|++||+.+..+..++++|
T Consensus 7 ~~~~~~~g~l~g~i~g~~G~Ggg~i~~P~L~~~~~~~~~a~~t~l~~~~~~~~~~~~~~~k~~~v~~~~~~~l~~~~~~G 86 (258)
T COG0730 7 LLLLFLVGLLAGFISGLAGGGGGLLTVPALLLLGLPPAAALGTSLLAVLFTSLSSALAYLKRGNVDWKLALILLLGALIG 86 (258)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 35578899999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q 048232 393 GFWGQYFIRKLVAILKRASLIVFLL 417 (455)
Q Consensus 393 a~iG~~l~~~i~~~~~r~~~~v~ll 417 (455)
+.+|..+..+++++..+..+.++++
T Consensus 87 ~~lG~~l~~~~~~~~l~~~~~~~ll 111 (258)
T COG0730 87 AFLGALLALLLPAELLKLLFGLLLL 111 (258)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999987665543
No 6
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=98.98 E-value=6e-09 Score=100.56 Aligned_cols=100 Identities=26% Similarity=0.427 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhhhcccchhhhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHH
Q 048232 317 AFCGILGGTVGGLLGSGGGFILGPLLLEIGVIPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLMAVSVLAGFWG 396 (455)
Q Consensus 317 ~~~g~~aG~~sGllGiGGG~il~P~Ll~~Gi~p~~A~ATs~~~~~fts~~s~i~~~~~G~i~~~~al~l~~~~~vGa~iG 396 (455)
.++++++|++.|..|.|+|.+.+|++..+ +||++|.+|+.....+++..++..|...+++||+....+.+++++|+.+|
T Consensus 2 ~~~~~~ag~v~g~~G~g~g~i~~p~l~~~-l~~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~iG 80 (240)
T PF01925_consen 2 LLIGFLAGFVSGITGFGGGLIAVPILILF-LPPKQAVATSLFINLFTSLIAALRHRKHGNIDWKIVLPLIIGALIGVVIG 80 (240)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhhhhhHhHHHHHHH
Confidence 35789999999999999999999999766 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 048232 397 QYFIRKLVAILKRASLIVFLL 417 (455)
Q Consensus 397 ~~l~~~i~~~~~r~~~~v~ll 417 (455)
..+...++++..+..+.++++
T Consensus 81 ~~l~~~l~~~~l~~~~~~~ll 101 (240)
T PF01925_consen 81 AWLLSLLPDDILKLIFGLFLL 101 (240)
T ss_pred HhhhcchhHHHHHHHHHHHHH
Confidence 999999999987776665543
No 7
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=91.58 E-value=15 Score=36.24 Aligned_cols=81 Identities=20% Similarity=0.236 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhhhcccchhhhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHH
Q 048232 314 AFCAFCGILGGTVGGLLGSGGGFILGPLLLEIGVIPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLMAVSVLAG 393 (455)
Q Consensus 314 ~~~~~~g~~aG~~sGllGiGGG~il~P~Ll~~Gi~p~~A~ATs~~~~~fts~~s~i~~~~~G~i~~~~al~l~~~~~vGa 393 (455)
....++|++++..==+=|+.|..+ |+.+|.=..+..|-+.+.. -|+....++.+|+++|-
T Consensus 143 ~~lf~~G~ia~~AMIlPGiSGS~i----LlilG~Y~~vl~ai~~~~~----------------~~~~~L~~f~~G~~~Gi 202 (257)
T PF04018_consen 143 LYLFLAGAIAACAMILPGISGSFI----LLILGLYEPVLSAISDLID----------------SNIPVLIPFGIGVVIGI 202 (257)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHH----HHHHHhHHHHHHHHHHhhh----------------hhhHHHHHHHHHHHHHH
Confidence 445666666655444557776533 3455654444444444333 57788999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q 048232 394 FWGQYFIRKLVAILKRASLIV 414 (455)
Q Consensus 394 ~iG~~l~~~i~~~~~r~~~~v 414 (455)
..-+|+.+++-+++.+..+..
T Consensus 203 ~~~skll~~ll~~~~~~t~~~ 223 (257)
T PF04018_consen 203 LLFSKLLSYLLKRYRSQTYAF 223 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988877653
No 8
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=90.47 E-value=19 Score=35.51 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=55.5
Q ss_pred HhcCChhhHhHhHHHHHHHHHHHHHHHHHhcCC-----CC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Q 048232 93 IVGFDTKSAAAISKCMIMGASASSVWYNLRVPH-----PT---KDVPILDYDLALLFQPMLLLGITVGVALSVVFPYWLI 164 (455)
Q Consensus 93 ~~g~~~~~A~~ts~~~i~~~s~~~~~~~~~~~~-----p~---~~~p~Id~~~~~~l~~~~l~Ga~lGa~l~~~lp~~~l 164 (455)
++|.++...........+++.++-.++++++-. .. .++..-|++....+.++.++-+.+|..+-..+.+...
T Consensus 29 llg~~~~~~~~f~v~lhlGtllAvl~~fr~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiatip~~v~G~~~~~~i~~~~~ 108 (259)
T PF02673_consen 29 LLGWDPEPGLAFDVFLHLGTLLAVLIYFRKDIWRLLKGFFRGLRGRSNPDRRLLLLIIIATIPTGVVGLLFKDFIEALFF 108 (259)
T ss_pred HhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 368887667677777777777776666543110 00 0122357888999999999999999887766665442
Q ss_pred --HHHHHHHHHHHHHHHH
Q 048232 165 --TVLIIILFLGTSSRSF 180 (455)
Q Consensus 165 --~~l~~ilLl~~~~~~~ 180 (455)
....++.++..+..+.
T Consensus 109 ~~~~~v~~~Li~~g~lL~ 126 (259)
T PF02673_consen 109 SSPLVVAIALIITGLLLW 126 (259)
T ss_pred hchHHHHHHHHHHHHHHH
Confidence 2344555555555443
No 9
>PTZ00370 STEVOR; Provisional
Probab=70.98 E-value=30 Score=34.54 Aligned_cols=46 Identities=20% Similarity=0.365 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 048232 146 LLGITVGVALSVVFP---YWLITVLIIILFLGTSSRSFFKGIQMWKEET 191 (455)
Q Consensus 146 l~Ga~lGa~l~~~lp---~~~l~~l~~ilLl~~~~~~~~k~~~~~~~e~ 191 (455)
+.|...|+..+.+.| ..++.++++++|+++=+++.++..+.||.|.
T Consensus 242 lagtAAtaAsaaF~Pygiaalvllil~vvliilYiwlyrrRK~swkhe~ 290 (296)
T PTZ00370 242 LAGTAASAASSAFYPYGIAALVLLILAVVLIILYIWLYRRRKNSWKHEC 290 (296)
T ss_pred ccchHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 455566666666666 4556666777777777777777777787765
No 10
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=68.21 E-value=1.3e+02 Score=29.84 Aligned_cols=94 Identities=17% Similarity=0.144 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHhcCChhhHhHhHHHHHHHHHHHHHHHHHhcC-------CCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Q 048232 83 GGIFVPMLTLIVGFDTKSAAAISKCMIMGASASSVWYNLRVP-------HPTKDVPILDYDLALLFQPMLLLGITVGVAL 155 (455)
Q Consensus 83 G~i~vP~L~~~~g~~~~~A~~ts~~~i~~~s~~~~~~~~~~~-------~p~~~~p~Id~~~~~~l~~~~l~Ga~lGa~l 155 (455)
=.+.+|- ++|++...+.....+..+++.++-.++++++= ........-|++..+.+..+.++.+.+|..+
T Consensus 28 Hl~l~~~---llg~~~~~~~~f~v~lhlGtllAvl~~fr~di~~~~~~~~~~~~~~~~~~~l~~~iii~tiP~~i~Gl~~ 104 (268)
T PRK00281 28 HLILVGH---LLGFEDDFGKTFDVVIQLGAILAVVVYFRRRLWRLLGGSGKGGRGDREDRRLLLLVIVATIPAGVLGLLF 104 (268)
T ss_pred HHHHHHH---HhCCCccccceehhHHHHhhHHHHHHHHHHHHHHHHHhhccccccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554 35775432233555556666666655553320 0001111236778888889999999999877
Q ss_pred HhhccHHHHH-HHHHHHHHHHHHHH
Q 048232 156 SVVFPYWLIT-VLIIILFLGTSSRS 179 (455)
Q Consensus 156 ~~~lp~~~l~-~l~~ilLl~~~~~~ 179 (455)
...+++..-. ...+..++..+..+
T Consensus 105 ~~~i~~~l~~~~~v~~~Lii~gilL 129 (268)
T PRK00281 105 KDFIKEHLFSPIVVAIALIVGGILL 129 (268)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHH
Confidence 7665443211 34455555555443
No 11
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=65.80 E-value=53 Score=32.50 Aligned_cols=52 Identities=21% Similarity=0.195 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 048232 136 DLALLFQPMLLLGITVGVALSVVFPYWLITVLIIILFLGTSSRSFFKGIQMW 187 (455)
Q Consensus 136 ~~~~~l~~~~l~Ga~lGa~l~~~lp~~~l~~l~~ilLl~~~~~~~~k~~~~~ 187 (455)
-....+.++.++.+.+|=..-..+|..+-..+-.+++++.+++|+..+.++-
T Consensus 104 Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~~~~ 155 (294)
T KOG2881|consen 104 GAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGWEMS 155 (294)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3344556778888889966657888888888888888999999999886653
No 12
>PF04066 MrpF_PhaF: Multiple resistance and pH regulation protein F (MrpF / PhaF); InterPro: IPR007208 Members of the PhaF/MrpF family are predicted to be integral membrane proteins with three transmembrane regions, involved in regulation of pH. PhaF is part of a potassium efflux system involved in pH regulation. It is also involved in symbiosis in Rhizobium meliloti (Sinorhizobium meliloti) []. MrpF is a part of a Na+/H+ antiporter complex, also involved in pH homeostasis. MrpF is thought to be an efflux system for Na+ and cholate []. The Mrp system in Gram-positive species may also have primary energisation capacities [].; GO: 0015075 ion transmembrane transporter activity, 0034220 ion transmembrane transport, 0016021 integral to membrane
Probab=65.13 E-value=37 Score=25.14 Aligned_cols=54 Identities=11% Similarity=0.116 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 048232 349 PQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLMAVSVLAGFWGQYFIRK 402 (455)
Q Consensus 349 p~~A~ATs~~~~~fts~~s~i~~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~~ 402 (455)
|.+..|.+.+...................-.+.++.+...+++|+..-+|..+|
T Consensus 2 ~DRvva~d~~~~~~v~~l~l~a~~~~~~~~lDialv~all~Fvgtva~arfl~r 55 (55)
T PF04066_consen 2 ADRVVALDLISTLIVALLALLAIITGRPFYLDIALVYALLGFVGTVAFARFLER 55 (55)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 567888888888888888888888877778899999999999999988876653
No 13
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=63.78 E-value=1.2e+02 Score=27.88 Aligned_cols=57 Identities=23% Similarity=0.431 Sum_probs=33.4
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 048232 339 GPLLLEIGVIPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLMAVSVLAGFWGQYFIRKLVAIL 407 (455)
Q Consensus 339 ~P~Ll~~Gi~p~~A~ATs~~~~~fts~~s~i~~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~~i~~~~ 407 (455)
.|.+...=++++.|..++.+..++.+... ..|.+..+... +++.++....+|..+|.
T Consensus 72 ~~~l~~~l~~~~~ai~~~~~~sl~~~~~~--------~~~~~~~~~~l----~~~~~~~~~~~~~~~R~ 128 (194)
T PF07698_consen 72 AAMLLTILIDPRLAILASLFLSLLASLLF--------GFDFEFFLYSL----VSGIVAIFSVRRIRSRS 128 (194)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHh--------cccHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 34445556788888888777777666552 33445555444 44555555555554443
No 14
>PLN00151 potassium transporter; Provisional
Probab=57.41 E-value=1.1e+02 Score=35.08 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=51.5
Q ss_pred hhhhHHHHHHHHh---------cC--ChhhHhHhHHH----HHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHH
Q 048232 82 GGGIFVPMLTLIV---------GF--DTKSAAAISKC----MIMGASASSVWYNLRVPHPTKDVPILDYDLALLFQPMLL 146 (455)
Q Consensus 82 GG~i~vP~L~~~~---------g~--~~~~A~~ts~~----~i~~~s~~~~~~~~~~~~p~~~~p~Id~~~~~~l~~~~l 146 (455)
-|-|++|..++++ ++ +.+.+.|...+ +.+.+.+.....+..++. .+-+-.......+.+
T Consensus 466 ~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~AYGiAV~~vM~iTT~L~~lV~~~~W~~------~~~~~~~f~~~F~~i 539 (852)
T PLN00151 466 MGQIYIPVINWFLLVMCLVVVCSFRSITDIGNAYGIAEVGVMMVSTILVTLVMLLIWQT------NIFLVLCFPVVFLSV 539 (852)
T ss_pred CCceeeHHHHHHHHHHHHhheeeecCHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHcCc------cHHHHHHHHHHHHHH
Confidence 4788999888763 33 23444444444 333455555544333221 133444455555666
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 048232 147 LGITVGVALSVVFPYWLITVLIIILFLGTS 176 (455)
Q Consensus 147 ~Ga~lGa~l~~~lp~~~l~~l~~ilLl~~~ 176 (455)
=+.++.+-+.+....-++.++++.++..+-
T Consensus 540 e~~f~sA~l~Ki~~GGW~Pl~la~v~~~iM 569 (852)
T PLN00151 540 ELVFFSSVLSSVGDGGWIPLVFASVFLCIM 569 (852)
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 677777777777777788888877666543
No 15
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=54.89 E-value=79 Score=34.41 Aligned_cols=31 Identities=10% Similarity=0.053 Sum_probs=13.6
Q ss_pred HHHHcCcccHHHHHHHHHHHHHHHHHHHHHH
Q 048232 370 EFYLLKRFPIPYALYLMAVSVLAGFWGQYFI 400 (455)
Q Consensus 370 ~~~~~G~i~~~~al~l~~~~~vGa~iG~~l~ 400 (455)
.|...|.-+|.....+....+.|..++..+.
T Consensus 320 ~yk~~~g~~W~~~~~lt~~~~P~~~~~~~~~ 350 (521)
T PF02990_consen 320 LYKSFGGKKWKKNSILTSLLFPGILFSIFFI 350 (521)
T ss_pred HHHHcCCCceeehhhHHHHHHHHHHHHHHHH
Confidence 3444444455544444444444444444433
No 16
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=54.26 E-value=35 Score=26.44 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=34.3
Q ss_pred chhhhHHHHHHHHhcCChhhHhHhHHHHHHHHHHHHHHHHH
Q 048232 81 GGGGIFVPMLTLIVGFDTKSAAAISKCMIMGASASSVWYNL 121 (455)
Q Consensus 81 GGG~i~vP~L~~~~g~~~~~A~~ts~~~i~~~s~~~~~~~~ 121 (455)
|+=.+.+|++.+++|.+..+|.+.+........+-+..+|+
T Consensus 16 ~~l~~~~P~~a~~~~~~~~~a~~l~v~~s~~a~~wn~ifN~ 56 (67)
T PF05232_consen 16 GALLISVPLIAWWLGISLWQAGALDVGLSLFAMVWNYIFNW 56 (67)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567789999999999999999988888888888888774
No 17
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=52.91 E-value=2.5e+02 Score=28.01 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=38.0
Q ss_pred HhHhHHHHHHHHHHHHHHHHHhcCCC-------CCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Q 048232 101 AAAISKCMIMGASASSVWYNLRVPHP-------TKDVPILDYDLALLFQPMLLLGITVGVALSVVFPYWLI 164 (455)
Q Consensus 101 A~~ts~~~i~~~s~~~~~~~~~~~~p-------~~~~p~Id~~~~~~l~~~~l~Ga~lGa~l~~~lp~~~l 164 (455)
+..-..+..+++-++-.++++++=.+ ..|+..=+|+..+...++.++-+.+|..+...+.+...
T Consensus 43 ~~~F~iviqlGailAV~~~f~~~i~~~l~~~~l~~~~~~~~~~l~l~ilvatiPa~v~Gl~~~d~i~~~l~ 113 (270)
T COG1968 43 GKSFEIVIQLGAILAVVVYFWNDLLRLLKGFRLKTDRESRRFRLWLKILVATIPAVVLGLLFKDFIKSHLF 113 (270)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHcc
Confidence 55555556667766666665431111 01111112778888889999999999888775555433
No 18
>COG2119 Predicted membrane protein [Function unknown]
Probab=52.21 E-value=56 Score=30.67 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=43.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh
Q 048232 133 LDYDLALLFQPMLLLGITVGVALSVVFPYWLITVLIIILFLGTSSRSFFK 182 (455)
Q Consensus 133 Id~~~~~~l~~~~l~Ga~lGa~l~~~lp~~~l~~l~~ilLl~~~~~~~~k 182 (455)
+-.-..+-+.+++++++..|-++++++|++.++.+-++++++.+.+.+..
T Consensus 135 V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~ 184 (190)
T COG2119 135 VFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQ 184 (190)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788899999999999999999999999999999998888766543
No 19
>COG2119 Predicted membrane protein [Function unknown]
Probab=52.04 E-value=2.1e+02 Score=26.92 Aligned_cols=49 Identities=20% Similarity=0.227 Sum_probs=40.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q 048232 133 LDYDLALLFQPMLLLGITVGVALSVVFPYWLITVLIIILFLGTSSRSFF 181 (455)
Q Consensus 133 Id~~~~~~l~~~~l~Ga~lGa~l~~~lp~~~l~~l~~ilLl~~~~~~~~ 181 (455)
|=--...-....-...+.+|.+....+|++.+.+.-+...+..+++++.
T Consensus 36 v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~ 84 (190)
T COG2119 36 VFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLI 84 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhc
Confidence 4344556667777889999999999999999999999999998887654
No 20
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=51.99 E-value=43 Score=26.70 Aligned_cols=43 Identities=21% Similarity=0.100 Sum_probs=34.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 048232 133 LDYDLALLFQPMLLLGITVGVALSVVFPYWLITVLIIILFLGT 175 (455)
Q Consensus 133 Id~~~~~~l~~~~l~Ga~lGa~l~~~lp~~~l~~l~~ilLl~~ 175 (455)
+=.-...-+.....+++.+|.++.+++|++.++++-+++++..
T Consensus 35 V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~f 77 (78)
T PF01169_consen 35 VFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLF 77 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 3344566677788899999999999999999999888776653
No 21
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=51.14 E-value=2.2e+02 Score=26.94 Aligned_cols=52 Identities=10% Similarity=0.271 Sum_probs=39.8
Q ss_pred ccHHHHHHH----HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhh
Q 048232 133 LDYDLALLF----QPMLLLGITVGVALSVVFPYWLITVLIIILFLGTSSRSFFKGI 184 (455)
Q Consensus 133 Id~~~~~~l----~~~~l~Ga~lGa~l~~~lp~~~l~~l~~ilLl~~~~~~~~k~~ 184 (455)
++++.++.+ ..+..+|-.+|..+..++|+++-.++=.++|++++.++++++.
T Consensus 28 ~~~~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~ 83 (206)
T TIGR02840 28 IPFLSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAF 83 (206)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 355544444 4556678888888888898887788889999999999998765
No 22
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=49.59 E-value=3.4e+02 Score=28.58 Aligned_cols=39 Identities=21% Similarity=0.145 Sum_probs=22.4
Q ss_pred HHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048232 393 GFWGQYFIRK-LVAILKRASLIVFLLSGVIFASALTMGVV 431 (455)
Q Consensus 393 a~iG~~l~~~-i~~~~~r~~~~v~ll~~~i~is~i~~~~~ 431 (455)
.+++..+++- +.+...+..+..+..+.++.+.++.++++
T Consensus 391 t~LlvgLa~v~~gdh~k~a~~wa~~~siv~l~~ai~~Gii 430 (433)
T COG2851 391 TYLLVGLAKVDMGDHQKFALKWAWGISIVMLAIAILMGII 430 (433)
T ss_pred HHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3444444443 22333344556677777888888887764
No 23
>TIGR00893 2A0114 d-galactonate transporter.
Probab=45.67 E-value=3e+02 Score=26.84 Aligned_cols=18 Identities=11% Similarity=-0.027 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 048232 143 PMLLLGITVGVALSVVFP 160 (455)
Q Consensus 143 ~~~l~Ga~lGa~l~~~lp 160 (455)
.+.++|..++..+.....
T Consensus 129 ~g~~~~~~~~~~l~~~~~ 146 (399)
T TIGR00893 129 LGGIIGGPLVGWILIHFS 146 (399)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 444555555555444333
No 24
>PLN00148 potassium transporter; Provisional
Probab=44.23 E-value=2.1e+02 Score=32.77 Aligned_cols=88 Identities=17% Similarity=0.221 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHh---------cC--ChhhHhHhHHH----HHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHHH
Q 048232 83 GGIFVPMLTLIV---------GF--DTKSAAAISKC----MIMGASASSVWYNLRVPHPTKDVPILDYDLALLFQPMLLL 147 (455)
Q Consensus 83 G~i~vP~L~~~~---------g~--~~~~A~~ts~~----~i~~~s~~~~~~~~~~~~p~~~~p~Id~~~~~~l~~~~l~ 147 (455)
|-|++|..++++ ++ +.+.|.|...+ +.+.+.+.....+..++. .+-+-.......+.+=
T Consensus 390 GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la~AYGiAV~~vM~iTT~L~~lV~~~~W~~------~~~~~~~f~~~F~~ie 463 (785)
T PLN00148 390 GQIYIPEINWILMILTLAVTIGFRDTTLIGNAYGLACMTVMFITTFLMALVIIFVWQK------SIILAALFLLFFGFIE 463 (785)
T ss_pred CceeeHHHHHHHHHHHHHhheeeccchhHHHhhhhheeeHHHHHHHHHHHHHHHHhCc------cHHHHHHHHHHHHHHH
Confidence 789999888753 33 23444444444 334444454444333221 1333344555566666
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 048232 148 GITVGVALSVVFPYWLITVLIIILFLGTS 176 (455)
Q Consensus 148 Ga~lGa~l~~~lp~~~l~~l~~ilLl~~~ 176 (455)
+.++++-+.+....-++.++++.++..+-
T Consensus 464 ~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM 492 (785)
T PLN00148 464 GVYLSAALMKVPQGGWVPLVLSAIFMSIM 492 (785)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 77788888887777788888877766543
No 25
>PRK12600 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=43.08 E-value=1.4e+02 Score=24.74 Aligned_cols=55 Identities=11% Similarity=0.088 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 048232 348 IPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLMAVSVLAGFWGQYFIRK 402 (455)
Q Consensus 348 ~p~~A~ATs~~~~~fts~~s~i~~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~~ 402 (455)
.+.+..|...+.....+.............-.+.++.+...+++|+..-+|...+
T Consensus 30 ~~DRvvAlD~l~~~~v~~i~l~~~~~~~~~~ldvalvlAll~Fv~tva~Aryl~~ 84 (94)
T PRK12600 30 LADRVVALDAIGINLIAIIALFSILLDTKAYLEVILLIGILAFIGTAAFSKFIEK 84 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999888888888888777777899999999999998887776543
No 26
>PRK10263 DNA translocase FtsK; Provisional
Probab=42.79 E-value=1.9e+02 Score=35.05 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhhccH
Q 048232 141 FQPMLLLGITVGVALSVVFPY 161 (455)
Q Consensus 141 l~~~~l~Ga~lGa~l~~~lp~ 161 (455)
+..|+++|..++..+...+..
T Consensus 140 ~~gGGIIG~lLs~lL~~LfG~ 160 (1355)
T PRK10263 140 FASGGVIGSLLSTTLQPLLHS 160 (1355)
T ss_pred ccccchHHHHHHHHHHHHHhH
Confidence 356888888888888777763
No 27
>PLN00150 potassium ion transporter family protein; Provisional
Probab=41.90 E-value=2.7e+02 Score=31.93 Aligned_cols=88 Identities=17% Similarity=0.220 Sum_probs=50.4
Q ss_pred hhhHHHHHHHHh---------cC--ChhhHhHhHHH----HHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHHH
Q 048232 83 GGIFVPMLTLIV---------GF--DTKSAAAISKC----MIMGASASSVWYNLRVPHPTKDVPILDYDLALLFQPMLLL 147 (455)
Q Consensus 83 G~i~vP~L~~~~---------g~--~~~~A~~ts~~----~i~~~s~~~~~~~~~~~~p~~~~p~Id~~~~~~l~~~~l~ 147 (455)
|-+++|..++++ ++ +.+.+.|...+ +.+.+.+.....+..++. .+-+-.......+.+=
T Consensus 407 GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~vM~iTT~L~~~v~~~~W~~------~~~~~~~f~~~f~~ie 480 (779)
T PLN00150 407 GQVYIPEINWILMVLCLVITAGFRDTDEIGNAYGIAVVGVMIITTCLMTLVMIIIWRK------HILLALLFFTVFAIIE 480 (779)
T ss_pred CceeeHHHHHHHHHHHHhheEEecChHHHHHHhhhheehhhHHHHHHHHHHHHHHcCc------cHHHHHHHHHHHHHHH
Confidence 788999888763 33 23444444444 333444555544333321 1333344444455666
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 048232 148 GITVGVALSVVFPYWLITVLIIILFLGTS 176 (455)
Q Consensus 148 Ga~lGa~l~~~lp~~~l~~l~~ilLl~~~ 176 (455)
+.++++-+.+....-++.++++.++..+-
T Consensus 481 ~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM 509 (779)
T PLN00150 481 GIYFSAVLFKVTQGGWVPLVIAAVFGTVM 509 (779)
T ss_pred HHHHHHHHhhhccCCcHHHHHHHHHHHHH
Confidence 77777777777777788887777666543
No 28
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=40.94 E-value=1.5e+02 Score=27.94 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=28.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhccH---------HHHHHHHHHHHHHHH
Q 048232 133 LDYDLALLFQPMLLLGITVGVALSVVFPY---------WLITVLIIILFLGTS 176 (455)
Q Consensus 133 Id~~~~~~l~~~~l~Ga~lGa~l~~~lp~---------~~l~~l~~ilLl~~~ 176 (455)
--++...+-..+.++|..+|+.+...+|. ..+.-++..++++++
T Consensus 138 ~~~rA~~~~~~~L~~G~~lGs~l~~~l~~~~~p~~~s~~~~~sl~~~i~lwl~ 190 (194)
T PF11833_consen 138 KLGRAFLWTLGGLVVGLILGSLLASWLPVDIVPGPWSPEQLVSLFTYILLWLV 190 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34677777777778888999888876643 344445554444443
No 29
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=40.51 E-value=3.4e+02 Score=26.05 Aligned_cols=65 Identities=15% Similarity=0.276 Sum_probs=38.6
Q ss_pred hHHHHH-HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048232 337 ILGPLL-LEIGVIPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLMAVSVLAGFWGQYFIRKL 403 (455)
Q Consensus 337 il~P~L-l~~Gi~p~~A~ATs~~~~~fts~~s~i~~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~~i 403 (455)
+..+.+ ..+|++++.+.+... --.|+-.+.-.--..|-.+--.+....+.+++|+.+|..+.++.
T Consensus 93 ~~~~~l~~~lgl~~~~~~Sl~p--kSVTtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g~~llk~~ 158 (215)
T PF04172_consen 93 FSAVLLARLLGLSPEIILSLAP--KSVTTPIAIEISEQIGGIPSLTAVFVVITGILGAVLGPPLLKLL 158 (215)
T ss_pred HHHHHHHHHHCcCHHHHHHHHH--HHhhHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhHHHHHhHc
Confidence 334555 678998877664221 11122222212223344455567777889999999999988875
No 30
>PRK06161 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=39.74 E-value=1.6e+02 Score=24.10 Aligned_cols=59 Identities=15% Similarity=0.011 Sum_probs=47.2
Q ss_pred HcC-CChHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 048232 344 EIG-VIPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLMAVSVLAGFWGQYFIRK 402 (455)
Q Consensus 344 ~~G-i~p~~A~ATs~~~~~fts~~s~i~~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~~ 402 (455)
..| -.++++.|...+.....+.............-.+.++.+...+++|+..-+|...|
T Consensus 25 v~GPt~~DRvvA~D~l~~~~v~~i~l~~~~~~~~~~ldvalvlAll~Fl~tva~AR~~~~ 84 (89)
T PRK06161 25 LRGPRAQDRILALDTLYINAILLLLVFGIRLGSTIYFEAALLIALLGFVSTVALAKFLLR 84 (89)
T ss_pred HcCccHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344 56899999999998888888888887777777888999998899888877766543
No 31
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=39.56 E-value=2.1e+02 Score=30.04 Aligned_cols=17 Identities=18% Similarity=0.106 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHhhc
Q 048232 143 PMLLLGITVGVALSVVF 159 (455)
Q Consensus 143 ~~~l~Ga~lGa~l~~~l 159 (455)
.+.++|..++..+....
T Consensus 380 lg~~igp~i~G~l~~~~ 396 (455)
T TIGR00892 380 CAVLIGPPLAGRLVDAT 396 (455)
T ss_pred HHHHccccceeeeehhc
Confidence 34444444444444333
No 32
>COG3619 Predicted membrane protein [Function unknown]
Probab=39.49 E-value=2.8e+02 Score=26.85 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=28.7
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Q 048232 130 VPILDYDLALLFQPMLLLGITVGVALSVVFPYWLIT 165 (455)
Q Consensus 130 ~p~Id~~~~~~l~~~~l~Ga~lGa~l~~~lp~~~l~ 165 (455)
....||..-..+.++-+.|+.+|+.+...+-++.+.
T Consensus 166 ~~~~~~~~~~~~il~f~~GAi~g~ll~~~~g~~al~ 201 (226)
T COG3619 166 EKLRDWLIYLSLILSFIVGAICGALLTLFFGLKALW 201 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 346788888888888899999999998887766543
No 33
>PRK12604 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=38.51 E-value=2e+02 Score=23.42 Aligned_cols=54 Identities=7% Similarity=0.075 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 048232 348 IPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLMAVSVLAGFWGQYFIR 401 (455)
Q Consensus 348 ~p~~A~ATs~~~~~fts~~s~i~~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~ 401 (455)
.+++..|.........+.............-.+.++.+...+++|+..-+|...
T Consensus 28 ~~DRvvAlD~l~~~~v~~i~l~a~~~~~~~~ldvalvlAll~Fv~tva~Aryl~ 81 (84)
T PRK12604 28 TVDRLVAVDIMTTITTGLMVLFALYYKRMIFLDVALVYAILAFVGVIAFARYLE 81 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999998888888887777788999999999999887776543
No 34
>PRK12599 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=38.42 E-value=1.9e+02 Score=23.77 Aligned_cols=55 Identities=13% Similarity=0.087 Sum_probs=46.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 048232 348 IPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLMAVSVLAGFWGQYFIRK 402 (455)
Q Consensus 348 ~p~~A~ATs~~~~~fts~~s~i~~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~~ 402 (455)
.+++..|.+.+...................-.+.++.+...+++|+..-+|...+
T Consensus 32 ~~DRvvAld~~~~~~v~~i~lla~~~~~~~~~dvalvlall~Fvgtva~Aryl~~ 86 (91)
T PRK12599 32 LPDRVVALDTLNTITVGIIAVLAAATGRPLYLDIAIVYALLSFLGTVAIAKYLVG 86 (91)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999888888888777777899999999999998887776544
No 35
>PLN00149 potassium transporter; Provisional
Probab=37.21 E-value=4.1e+02 Score=30.54 Aligned_cols=89 Identities=15% Similarity=0.205 Sum_probs=49.5
Q ss_pred hhhhHHHHHHHHh---------cC--ChhhHhHhHHH----HHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHH
Q 048232 82 GGGIFVPMLTLIV---------GF--DTKSAAAISKC----MIMGASASSVWYNLRVPHPTKDVPILDYDLALLFQPMLL 146 (455)
Q Consensus 82 GG~i~vP~L~~~~---------g~--~~~~A~~ts~~----~i~~~s~~~~~~~~~~~~p~~~~p~Id~~~~~~l~~~~l 146 (455)
-|-|++|..++++ ++ +.+.+.|...+ +.+.+.+........++. .+-+-.......+.+
T Consensus 393 ~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~vM~iTT~L~~lv~~~~W~~------~~~~~~~f~~~f~~i 466 (779)
T PLN00149 393 HGQIYIPEINWTLMLLCLAVTVGFRDTKRLGNASGLAVITVMLVTTCLMSLVIVLCWHK------SVLLAICFIFFFGTI 466 (779)
T ss_pred CCceeeHHHHHHHHHHHHhheeEecChHHHHHHhhhhhehHHHHHHHHHHHHHHHHcCc------cHHHHHHHHHHHHHH
Confidence 3788999888753 33 23444444444 333444555444333221 133334444445555
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 048232 147 LGITVGVALSVVFPYWLITVLIIILFLGTS 176 (455)
Q Consensus 147 ~Ga~lGa~l~~~lp~~~l~~l~~ilLl~~~ 176 (455)
=+.++.+-+.+....-++.++++..+..+-
T Consensus 467 e~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM 496 (779)
T PLN00149 467 EALYFSASLIKFLEGAWVPIALSFIFLLVM 496 (779)
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 666777777777777777777776666543
No 36
>COG4280 Predicted membrane protein [Function unknown]
Probab=36.55 E-value=2.4e+02 Score=26.95 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=29.3
Q ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 048232 156 SVVFPYWLITVLIIILFLGTSSRSFFKGIQMWKE 189 (455)
Q Consensus 156 ~~~lp~~~l~~l~~ilLl~~~~~~~~k~~~~~~~ 189 (455)
...+|-+.+++..+++|+..+.+-.+|.++.+.+
T Consensus 58 L~lvPln~lqiv~gvLLllFG~rw~Rsavrr~ag 91 (236)
T COG4280 58 LYLVPLNYLQIVSGVLLLLFGYRWIRSAVRRFAG 91 (236)
T ss_pred eeeeechHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4568999999999999999999999998776653
No 37
>PRK12612 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=36.50 E-value=2.1e+02 Score=23.35 Aligned_cols=55 Identities=13% Similarity=-0.036 Sum_probs=45.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 048232 347 VIPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLMAVSVLAGFWGQYFIR 401 (455)
Q Consensus 347 i~p~~A~ATs~~~~~fts~~s~i~~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~ 401 (455)
-.+.+..|.+.+.....+..........-..-.+.++.+...+++|+..-+|...
T Consensus 29 t~~DRvvalD~l~~~~v~~l~~~~~~~~~~~~~dvalvlall~FvgTva~Ar~l~ 83 (87)
T PRK12612 29 DILTRLVISDMVFYAMALILLCLGLYNGTSIYYDIALAAGLLGFLGTIAYARIIS 83 (87)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999998888888888887777777788999999999999888777654
No 38
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=36.36 E-value=4.1e+02 Score=25.83 Aligned_cols=79 Identities=14% Similarity=0.110 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhhcccchhhhHHHHH-HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHH
Q 048232 316 CAFCGILGGTVGGLLGSGGGFILGPLL-LEIGVIPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLMAVSVLAGF 394 (455)
Q Consensus 316 ~~~~g~~aG~~sGllGiGGG~il~P~L-l~~Gi~p~~A~ATs~~~~~fts~~s~i~~~~~G~i~~~~al~l~~~~~vGa~ 394 (455)
..+.|..+|.+.+++ ....+ ..+|.|++...+. .---.|+-.+.-.--..|-.+--.+....+.+++|+.
T Consensus 95 ~Il~~~~vG~~~~i~-------s~~~la~~lgl~~~~~~Sl--~pKSVTtPIAm~is~~iGG~psLtA~~ViitGi~Gai 165 (232)
T PRK04288 95 QILGGIVVGSVCSVL-------IIYLVAKLIQLDNAVMASM--LPQAATTAIALPVSAGIGGIKEITSFAVIFNAVIIYA 165 (232)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHCcCHHHHHHH--hhHhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 445555555554432 22444 5788888665431 1111111122212223455666667788889999999
Q ss_pred HHHHHHHHh
Q 048232 395 WGQYFIRKL 403 (455)
Q Consensus 395 iG~~l~~~i 403 (455)
+|..+.+..
T Consensus 166 ~g~~llk~~ 174 (232)
T PRK04288 166 LGAKFLKLF 174 (232)
T ss_pred HHHHHHHHc
Confidence 999988765
No 39
>PRK01844 hypothetical protein; Provisional
Probab=34.90 E-value=1e+02 Score=24.34 Aligned_cols=27 Identities=15% Similarity=0.063 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 048232 384 YLMAVSVLAGFWGQYFIRKLVAILKRA 410 (455)
Q Consensus 384 ~l~~~~~vGa~iG~~l~~~i~~~~~r~ 410 (455)
..+++-++|...|-.+++|.-+++++.
T Consensus 9 l~I~~li~G~~~Gff~ark~~~k~lk~ 35 (72)
T PRK01844 9 VGVVALVAGVALGFFIARKYMMNYLQK 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666667777777777654
No 40
>PRK08381 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=34.07 E-value=2.5e+02 Score=22.96 Aligned_cols=54 Identities=9% Similarity=0.207 Sum_probs=45.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 048232 348 IPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLMAVSVLAGFWGQYFIR 401 (455)
Q Consensus 348 ~p~~A~ATs~~~~~fts~~s~i~~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~ 401 (455)
.|++..|.........+.............-.+.++.+...+++|+..-+|...
T Consensus 31 ~~DRvvAlD~l~~~~v~~i~l~~~~~~~~~~ldvalv~All~Fv~tva~Ary~~ 84 (87)
T PRK08381 31 LADRIVGLNTITTKVVGIIAILSVLWEEYYLLDLAIVLLMVNAVGGLILAKYME 84 (87)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999998888888887777788999999999999887766543
No 41
>COG1288 Predicted membrane protein [Function unknown]
Probab=33.95 E-value=3.7e+02 Score=28.80 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHhcCChhhHhHhHHHHH
Q 048232 83 GGIFVPMLTLIVGFDTKSAAAISKCMI 109 (455)
Q Consensus 83 G~i~vP~L~~~~g~~~~~A~~ts~~~i 109 (455)
-.+++|++.. +|+|+-.++++-.+..
T Consensus 162 ypIliPv~ia-lGyDsi~~va~i~lgt 187 (481)
T COG1288 162 YPILIPLMVA-LGYDSITGVAIIYIGT 187 (481)
T ss_pred HHHHHHHHHH-hCCchHHHHHHHHHHh
Confidence 3466777776 7999888887665543
No 42
>PRK12657 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=32.58 E-value=2.5e+02 Score=23.61 Aligned_cols=55 Identities=11% Similarity=0.030 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 048232 348 IPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLMAVSVLAGFWGQYFIRK 402 (455)
Q Consensus 348 ~p~~A~ATs~~~~~fts~~s~i~~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~~ 402 (455)
.|.+..|-..+.....+..+..........-.+.++.+...+++|+..-+|...|
T Consensus 34 ~~DRivAlD~l~~~~v~~i~l~a~~~~~~~~ldvaLvlAll~Fv~tva~ARyl~~ 88 (100)
T PRK12657 34 TADRVVTFDTTSAVVMSIVGVLSVLMGTVSFLDSIMLIAIISFVSSVSISRFIGG 88 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5788899999888888888888877777777889999999999999888776643
No 43
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=30.92 E-value=5e+02 Score=25.11 Aligned_cols=26 Identities=19% Similarity=0.094 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048232 134 DYDLALLFQPMLLLGITVGVALSVVF 159 (455)
Q Consensus 134 d~~~~~~l~~~~l~Ga~lGa~l~~~l 159 (455)
=|+....+.+|+++|+.+|......-
T Consensus 8 ~~~~~~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 8 ILRFLLLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888999999999998766544
No 44
>PRK11588 hypothetical protein; Provisional
Probab=29.89 E-value=7.6e+02 Score=26.94 Aligned_cols=11 Identities=0% Similarity=-0.224 Sum_probs=5.8
Q ss_pred HHHHHHHHHHH
Q 048232 405 AILKRASLIVF 415 (455)
Q Consensus 405 ~~~~r~~~~v~ 415 (455)
+||.|...-.+
T Consensus 476 ~kW~Kf~~pl~ 486 (506)
T PRK11588 476 GNWLKFIWRFL 486 (506)
T ss_pred HHHHHHHHHHH
Confidence 56666554433
No 45
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=29.86 E-value=3.9e+02 Score=29.30 Aligned_cols=38 Identities=8% Similarity=-0.012 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 048232 138 ALLFQPMLLLGITVGVALSVVFPYWLITVLIIILFLGT 175 (455)
Q Consensus 138 ~~~l~~~~l~Ga~lGa~l~~~lp~~~l~~l~~ilLl~~ 175 (455)
......+.+=+.++.+-+.+....-++.++++.++..+
T Consensus 388 ~~~~~fl~id~~ff~anl~K~~~GGW~pl~ia~~l~~i 425 (534)
T PF02705_consen 388 LFFLFFLVIDLLFFSANLLKFPHGGWFPLLIAAVLFTI 425 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHH
Confidence 33344455556777777787777777777777666554
No 46
>PRK00523 hypothetical protein; Provisional
Probab=29.85 E-value=1.4e+02 Score=23.65 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q 048232 386 MAVSVLAGFWGQYFIRKLVAILKR 409 (455)
Q Consensus 386 ~~~~~vGa~iG~~l~~~i~~~~~r 409 (455)
+++-++|...|-.+++|.-+++++
T Consensus 12 i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 12 IPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666777777777766
No 47
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=29.82 E-value=3.2e+02 Score=22.74 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhhccHHHH
Q 048232 142 QPMLLLGITVGVALSVVFPYWLI 164 (455)
Q Consensus 142 ~~~~l~Ga~lGa~l~~~lp~~~l 164 (455)
..+.++|+.+|..+....|+...
T Consensus 40 i~Gt~iG~~~~~~~~~~~~~~~~ 62 (128)
T PF13515_consen 40 ILGTLIGVVLGLLLLYLFPGNYV 62 (128)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHH
Confidence 67889999999999888887633
No 48
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=29.36 E-value=76 Score=31.75 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 048232 146 LLGITVGVALSVVFP---YWLITVLIIILFLGTSSRSFFKGIQMWKEE 190 (455)
Q Consensus 146 l~Ga~lGa~l~~~lp---~~~l~~l~~ilLl~~~~~~~~k~~~~~~~e 190 (455)
+.|...|+..+.+.| ..++.++++++|+++=+.+.++..+.||.|
T Consensus 246 lagtAAtaA~aaF~Pcgiaalvllil~vvliiLYiWlyrrRK~swkhe 293 (295)
T TIGR01478 246 DAERAASAATSTFLPYGIAALVLIILTVVLIILYIWLYRRRKKSWKHE 293 (295)
T ss_pred ccchHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 445555655566666 345556666666666666666666666654
No 49
>COG2035 Predicted membrane protein [Function unknown]
Probab=28.53 E-value=6.1e+02 Score=25.36 Aligned_cols=72 Identities=18% Similarity=0.135 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhhccccchhhhHHHHHHHHhcCChhhHhHhHHHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHH
Q 048232 65 TVIGFLGSACGTVGGVGGGGIFVPMLTLIVGFDTKSAAAISKCMIMGASASSVWYNLRVPHPTKDVPILDYDLALLFQPM 144 (455)
Q Consensus 65 ~iig~~ag~is~~~GiGGG~i~vP~L~~~~g~~~~~A~~ts~~~i~~~s~~~~~~~~~~~~p~~~~p~Id~~~~~~l~~~ 144 (455)
.+-|.+-|.-..+=|+.||.+-+-.=++ + -+..++++...+. .+ ..||....++..|
T Consensus 8 ~~kG~~mG~AdivPGVSGGTiAlilGIY----e-----------rlI~~i~~~~~~~-~~-------~~~~~fLi~l~~G 64 (276)
T COG2035 8 VFKGILMGAADIVPGVSGGTIALILGIY----E-----------RLIEAIAGIFKLD-EF-------KRNVLFLIPLGIG 64 (276)
T ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHH----H-----------HHHHHHhhhhhhh-hh-------hhhhHHHHHHHHH
Confidence 4566777777888899999765422222 1 1122333333221 12 2788888888888
Q ss_pred HHHHHHHHHHHHhhc
Q 048232 145 LLLGITVGVALSVVF 159 (455)
Q Consensus 145 ~l~Ga~lGa~l~~~l 159 (455)
.+.|...=+.+-+++
T Consensus 65 ~~~~i~~~a~ii~~l 79 (276)
T COG2035 65 MLLGIFLFAKIIEYL 79 (276)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887777777665554
No 50
>TIGR03434 ADOP Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
Probab=28.38 E-value=6.3e+02 Score=28.55 Aligned_cols=28 Identities=29% Similarity=0.145 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhhcccchhhhHHHHHH
Q 048232 316 CAFCGILGGTVGGLLGSGGGFILGPLLL 343 (455)
Q Consensus 316 ~~~~g~~aG~~sGllGiGGG~il~P~Ll 343 (455)
+..-+++.+++++++|+.-|.+..+.+.
T Consensus 321 ~l~E~~~l~~~~~~lg~~l~~~~~~~~~ 348 (803)
T TIGR03434 321 LLTESLLLALAGGALGLLLAYWGLRLLL 348 (803)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888888888888877764
No 51
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=27.30 E-value=7.2e+02 Score=25.79 Aligned_cols=95 Identities=22% Similarity=0.300 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhhhcccchhhhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHH
Q 048232 314 AFCAFCGILGGTVGGLLGSGGGFILGPLLLEIGVIPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLMAVSVLAG 393 (455)
Q Consensus 314 ~~~~~~g~~aG~~sGllGiGGG~il~P~Ll~~Gi~p~~A~ATs~~~~~fts~~s~i~~~~~G~i~~~~al~l~~~~~vGa 393 (455)
......++..|.+.-++++..+.++++.+.. ..+.-..-.++.++-.+....-.++|.
T Consensus 12 ~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a----------------------~~v~~~~~~~l~~P~~l~~~~q~ilG~ 69 (352)
T COG3180 12 FILLLLSLLGGWLLTLLHVPAAWMLGAPLLA----------------------GIVAGLRGLTLPLPRGLFKAGQVILGI 69 (352)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH----------------------HHHHHhccccccCChHHHHHHHHHHHH
Confidence 4456677788888888888887777733211 111113344566677777788889999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048232 394 FWGQYFIRKLVAILKRASLIVFLLSGVIFASALTMGV 430 (455)
Q Consensus 394 ~iG~~l~~~i~~~~~r~~~~v~ll~~~i~is~i~~~~ 430 (455)
.+|+.+.....+...+....++.+..+...+.+.++.
T Consensus 70 ~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ 106 (352)
T COG3180 70 MIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGW 106 (352)
T ss_pred HHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 9999988888777777666655555555555555544
No 52
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=27.15 E-value=2.4e+02 Score=22.45 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 048232 381 YALYLMAVSVLAGFWGQYFIRKLVAILKRASLIV 414 (455)
Q Consensus 381 ~al~l~~~~~vGa~iG~~l~~~i~~~~~r~~~~v 414 (455)
..+.+.+...++..+|..+.+++++++.+..-.+
T Consensus 39 ~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~ 72 (78)
T PF01169_consen 39 ATLALALATGLAVLLGSWLASRIPERYIKWVAGA 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 3556677889999999999999999998875543
No 53
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=26.90 E-value=5.9e+02 Score=24.67 Aligned_cols=65 Identities=18% Similarity=0.396 Sum_probs=39.9
Q ss_pred hHHHHH-HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048232 337 ILGPLL-LEIGVIPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLMAVSVLAGFWGQYFIRKL 403 (455)
Q Consensus 337 il~P~L-l~~Gi~p~~A~ATs~~~~~fts~~s~i~~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~~i 403 (455)
...+.+ ..+|.+++...+ ..---.|+-.+.-.--..|-.+--.+....+.+++|+.+|..+.+..
T Consensus 103 ~s~~~la~~lg~~~~i~~S--l~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 103 ISGTLLALLLGLGPEIIAS--LLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHHHHHCcCHHHHHH--hhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445666 578998776652 22222222222222223444555567777889999999999988876
No 54
>PRK07948 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=25.83 E-value=3.4e+02 Score=22.13 Aligned_cols=54 Identities=13% Similarity=-0.006 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 048232 348 IPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLMAVSVLAGFWGQYFIR 401 (455)
Q Consensus 348 ~p~~A~ATs~~~~~fts~~s~i~~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~ 401 (455)
.|.+..|-........+.............-.+.++.+...+++|+..-+|...
T Consensus 29 ~~DRvvAlD~l~~~~v~~l~l~~~~~~~~~~ldvalvlAll~Fv~tva~Ary~~ 82 (86)
T PRK07948 29 SLDRLVALDTLVAVTMCALATWAAWTLDTTVTNAMTALALIGFIGSVSVARFRV 82 (86)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578889999888777777777766665566678888999999999887766543
No 55
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.72 E-value=1.6e+02 Score=24.82 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHH
Q 048232 138 ALLFQPMLLLGITVGVALSVVFPYW 162 (455)
Q Consensus 138 ~~~l~~~~l~Ga~lGa~l~~~lp~~ 162 (455)
.+-+....++|+.+|-++-.++|..
T Consensus 49 G~~~v~pil~G~~lG~WLD~~~~t~ 73 (100)
T TIGR02230 49 GWSVAIPTLLGVAVGIWLDRHYPSP 73 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 4456667788999999999888753
No 56
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=25.70 E-value=5.5e+02 Score=23.89 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 048232 379 IPYALYLMAVSVLAGFWGQYFIRKLVAILKR 409 (455)
Q Consensus 379 ~~~al~l~~~~~vGa~iG~~l~~~i~~~~~r 409 (455)
........+..++++.+|+.+.+|+-+|+.+
T Consensus 158 ~~~~~~~~~~t~v~~~iG~~iG~kllkKHF~ 188 (189)
T TIGR02185 158 AIWAVIMIVLTAVAGIAGVLIGKKLLKKHFE 188 (189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445556667777778888877777776643
No 57
>PRK10263 DNA translocase FtsK; Provisional
Probab=24.66 E-value=1.1e+03 Score=29.07 Aligned_cols=18 Identities=17% Similarity=-0.033 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhhcccch
Q 048232 317 AFCGILGGTVGGLLGSGG 334 (455)
Q Consensus 317 ~~~g~~aG~~sGllGiGG 334 (455)
.+-..++.++-++||+++
T Consensus 66 iVGA~LAD~L~~LFGl~A 83 (1355)
T PRK10263 66 MPGAWLADTLFFIFGVMA 83 (1355)
T ss_pred hHHHHHHHHHHHHHhHHH
Confidence 344566777778888754
No 58
>COG1784 Predicted membrane protein [Function unknown]
Probab=24.56 E-value=8.3e+02 Score=25.58 Aligned_cols=127 Identities=19% Similarity=0.154 Sum_probs=59.6
Q ss_pred hhhHHHHHHHHHHHHHHhhhc-ccchhhhHHHHHHHcCCChHH-------HHHHHHHHHHHHHH-------HHHHHHH--
Q 048232 310 PMHIAFCAFCGILGGTVGGLL-GSGGGFILGPLLLEIGVIPQV-------ASATATFVMMFSSS-------LSVVEFY-- 372 (455)
Q Consensus 310 ~~~~~~~~~~g~~aG~~sGll-GiGGG~il~P~Ll~~Gi~p~~-------A~ATs~~~~~fts~-------~s~i~~~-- 372 (455)
.++..+..+.|-++|+..+++ |++++....-.-...+=+-.+ .+-|++..--+.+. +++..++
T Consensus 215 ~~~~~k~~~~gslAG~~~~~LPGvs~aqa~~la~~~~~~~~~~~fi~avs~intanavfsL~aL~~iG~~RSGv~vai~~ 294 (395)
T COG1784 215 GKRLLKSSFAGSLAGALVSFLPGVSPAQAALLASKLTGDDEDRRFITAVSGINTANAVFSLVALIAIGKPRSGVAVAIQR 294 (395)
T ss_pred ccccchhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhccCCCCceEEEEEeccchHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 455667778888888877766 777765444443333333331 11122221111111 1111222
Q ss_pred HcCcccHHHHHHH-HHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 048232 373 LLKRFPIPYALYL-MAVSVLAG----FWGQYFIRKLVAILKRASLIVFLLSGVIFASALTMGVVGIEKSI 437 (455)
Q Consensus 373 ~~G~i~~~~al~l-~~~~~vGa----~iG~~l~~~i~~~~~r~~~~v~ll~~~i~is~i~~~~~g~~~~~ 437 (455)
..+.++.++...+ ...+.+.. +++.+...|+..+..++....++...++.. -+.|++.|+.-..
T Consensus 295 ~~~~i~~p~~i~l~~~a~~i~~~L~~~ls~~~~~~v~~~~~s~l~a~vl~~lvil~-~~~~gf~gl~v~~ 363 (395)
T COG1784 295 SVGDITLPYLIFLVLSAALIAVALAPWLSILALLKVRFKDYSKLCAGVLLFLVILG-YLLMGFIGLGVLG 363 (395)
T ss_pred HhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHH
Confidence 2345555533332 33334444 444444445555555555555554444433 6666665554443
No 59
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=23.98 E-value=1.6e+02 Score=29.40 Aligned_cols=87 Identities=18% Similarity=0.190 Sum_probs=40.1
Q ss_pred cchhhhHHHHHHHHhcCChh--hHhHhHHHHHHHHHHHHHHHHHhcCC-CCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 048232 80 VGGGGIFVPMLTLIVGFDTK--SAAAISKCMIMGASASSVWYNLRVPH-PTKDVPILDYDLALLFQPMLLLGITVGVALS 156 (455)
Q Consensus 80 iGGG~i~vP~L~~~~g~~~~--~A~~ts~~~i~~~s~~~~~~~~~~~~-p~~~~p~Id~~~~~~l~~~~l~Ga~lGa~l~ 156 (455)
+|-+...+|+.-+++.+.+. ...+.-......+.+.....+.||++ |..++..++.+....- |....
T Consensus 63 ~glSi~~~~~~g~~l~~~~~~i~~~~i~~~l~~~t~~~~~~a~~rr~~~~~~~r~~~~~~~~~~~----------~~~~~ 132 (287)
T PF07760_consen 63 VGLSIAIVPLIGLLLNYTPWGIRLIPILISLSIFTLVLSIIAYIRRRRLPEEERFSVPFDRWSSS----------GSYLS 132 (287)
T ss_pred HHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHhcccCCccccccccchhcccc----------ccccc
Confidence 34455666666555544331 11111111122222233333344444 6666655555432221 56665
Q ss_pred hhccHHHHHHHHHHHHHHHH
Q 048232 157 VVFPYWLITVLIIILFLGTS 176 (455)
Q Consensus 157 ~~lp~~~l~~l~~ilLl~~~ 176 (455)
..-.++.+.+++.+.++...
T Consensus 133 ~~~~~~~l~viLvi~il~~v 152 (287)
T PF07760_consen 133 NSRSDNVLNVILVISILAAV 152 (287)
T ss_pred ccchHHHHHHHHHHHHHHHH
Confidence 55667777776666444443
No 60
>PTZ00359 hypothetical protein; Provisional
Probab=23.96 E-value=8.8e+02 Score=25.70 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=9.3
Q ss_pred chhhHHHHHHHHHHHHH
Q 048232 4 ATRGFVFYLLSGFSVAI 20 (455)
Q Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (455)
+....++|.+...-.+.
T Consensus 179 t~~r~vFYv~a~Iy~l~ 195 (443)
T PTZ00359 179 TLNKKVFYTFAFIYMLV 195 (443)
T ss_pred ccccEEEeeHHHHHHHH
Confidence 33445566665555555
No 61
>PF05052 MerE: MerE protein; InterPro: IPR007746 The prokaryotic MerE (or URF-1) protein is part of the mercury resistance operon often located on plasmids or transposons [, ]. It has been suggested that MerE is a broad mercury transporter mediating transport across the bacterial membrane [].
Probab=23.79 E-value=2.4e+02 Score=22.35 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Q 048232 143 PMLLLGITVGVALSVVFPYWLITVLIIILFLGTSS 177 (455)
Q Consensus 143 ~~~l~Ga~lGa~l~~~lp~~~l~~l~~ilLl~~~~ 177 (455)
...+.|+..|+++..+ |.+-.+....+.+.++
T Consensus 36 ~~vLaGTaaGafl~e~---w~iaal~l~~LF~lsl 67 (75)
T PF05052_consen 36 APVLAGTAAGAFLGEH---WVIAALTLTGLFVLSL 67 (75)
T ss_pred HHHHccchHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3356677777777653 4444444444444443
No 62
>PRK12603 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=23.00 E-value=4.2e+02 Score=21.63 Aligned_cols=55 Identities=13% Similarity=0.013 Sum_probs=43.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHHHHHHHHHH
Q 048232 347 VIPQVASATATFVMMFSSSLSVVEFYLLKR-FPIPYALYLMAVSVLAGFWGQYFIR 401 (455)
Q Consensus 347 i~p~~A~ATs~~~~~fts~~s~i~~~~~G~-i~~~~al~l~~~~~vGa~iG~~l~~ 401 (455)
-.|++..|...+.....+............ .-.+.++.+...+++|+..-+|...
T Consensus 26 T~~DRvvAlD~l~~~~v~~i~l~~~~~~~~~~~lDvaLvlAll~Fv~tva~Aryl~ 81 (86)
T PRK12603 26 TIYDKILAANLFGTYSVVLIVVLGVINDAQSLFIDVSLVYACIGLVSAIGFMKFFL 81 (86)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999988888888777776554 3488899999999999887776554
No 63
>COG2212 MnhF Multisubunit Na+/H+ antiporter, MnhF subunit [Inorganic ion transport and metabolism]
Probab=22.87 E-value=3.4e+02 Score=22.37 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 048232 348 IPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLMAVSVLAGFWGQYFIR 401 (455)
Q Consensus 348 ~p~~A~ATs~~~~~fts~~s~i~~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~ 401 (455)
-|.+..|.++..+....+...+.....-..-.|.++.+.+.+++|+..-+|...
T Consensus 31 ~~DRvvalD~l~~~~~~~i~ll~~~~~~~~~lDialvlalL~FigTva~akfl~ 84 (89)
T COG2212 31 LPDRVVALDTLGTNLVGILALLGILTGNTIYLDIALVLALLGFIGTVAFAKFLE 84 (89)
T ss_pred ccchhhhHhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888888888887777777789999999999999988877665
No 64
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=22.49 E-value=4.9e+02 Score=27.11 Aligned_cols=11 Identities=36% Similarity=0.788 Sum_probs=7.0
Q ss_pred HhcCCCCCCCC
Q 048232 121 LRVPHPTKDVP 131 (455)
Q Consensus 121 ~~~~~p~~~~p 131 (455)
+|+++|+.++|
T Consensus 370 lr~~~p~~~rp 380 (442)
T TIGR00908 370 LRIRRPDMERP 380 (442)
T ss_pred HHhcCCCCCCC
Confidence 46677766655
No 65
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=21.52 E-value=9.8e+02 Score=25.32 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=14.8
Q ss_pred hhHHHHHHHH---hcCChhhHhHhHH
Q 048232 84 GIFVPMLTLI---VGFDTKSAAAISK 106 (455)
Q Consensus 84 ~i~vP~L~~~---~g~~~~~A~~ts~ 106 (455)
..+.|+..-+ +|+|+....+...
T Consensus 110 i~~~PI~i~ia~~lG~d~~~~l~~~~ 135 (433)
T PRK09412 110 FSTLPVIAEVAKEQGIRPSRPLSIAV 135 (433)
T ss_pred HHHHHHHHHHHHHcCCCCcchHHHHH
Confidence 3367777654 5888877666433
No 66
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=21.23 E-value=3.3e+02 Score=19.72 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccH-HHHHHHHHHHHHHHHHHH
Q 048232 137 LALLFQPMLLLGITVGVALSVVFPY-WLITVLIIILFLGTSSRS 179 (455)
Q Consensus 137 ~~~~l~~~~l~Ga~lGa~l~~~lp~-~~l~~l~~ilLl~~~~~~ 179 (455)
++.-+..+.++|..+|-++-++++. .+..++..++=+..+.+.
T Consensus 6 lg~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~~~g~~~ 49 (55)
T PF09527_consen 6 LGFTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGIAAGFYN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 4555666777888888888887765 333333333333444433
No 67
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=20.91 E-value=1.6e+02 Score=24.57 Aligned_cols=11 Identities=36% Similarity=0.661 Sum_probs=6.0
Q ss_pred cchhhHHHHHH
Q 048232 3 MATRGFVFYLL 13 (455)
Q Consensus 3 ~~~~~~~~~~~ 13 (455)
|++|.|++-++
T Consensus 1 MaSK~~llL~l 11 (95)
T PF07172_consen 1 MASKAFLLLGL 11 (95)
T ss_pred CchhHHHHHHH
Confidence 55676554433
No 68
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=20.44 E-value=3.5e+02 Score=26.19 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=28.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh
Q 048232 131 PILDYDLALLFQPMLLLGITVGVALSVVFPYWLITVLIIILFLGTSSRSFFK 182 (455)
Q Consensus 131 p~Id~~~~~~l~~~~l~Ga~lGa~l~~~lp~~~l~~l~~ilLl~~~~~~~~k 182 (455)
|.+-|-....++...+++..+|-.+. .+++.+++++++..++....+.
T Consensus 25 p~l~~~ml~a~l~~~~v~v~ig~l~~----~~~~~~i~gi~~g~l~am~vl~ 72 (224)
T PF13829_consen 25 PKLPWLMLGAFLGPIAVFVLIGLLFG----SWWYWLIIGILLGLLAAMIVLS 72 (224)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHc----cHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554444 6777777777777666555443
No 69
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=20.22 E-value=7e+02 Score=23.09 Aligned_cols=32 Identities=9% Similarity=0.156 Sum_probs=22.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 048232 378 PIPYALYLMAVSVLAGFWGQYFIRKLVAILKR 409 (455)
Q Consensus 378 ~~~~al~l~~~~~vGa~iG~~l~~~i~~~~~r 409 (455)
+.+......+..++++.+|..+.+|+-+|..+
T Consensus 154 ~~~~~~~~~~~~~v~a~lG~~lG~kllkKHF~ 185 (186)
T PF09605_consen 154 TPWMLIIIIIITFVGALLGALLGKKLLKKHFE 185 (186)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44556666777788888888888887777654
No 70
>PRK10711 hypothetical protein; Provisional
Probab=20.17 E-value=8.1e+02 Score=23.82 Aligned_cols=79 Identities=15% Similarity=0.290 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhhcccchhhhHHHHH-HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHH
Q 048232 316 CAFCGILGGTVGGLLGSGGGFILGPLL-LEIGVIPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLMAVSVLAGF 394 (455)
Q Consensus 316 ~~~~g~~aG~~sGllGiGGG~il~P~L-l~~Gi~p~~A~ATs~~~~~fts~~s~i~~~~~G~i~~~~al~l~~~~~vGa~ 394 (455)
-...|..+|.+.|+ +....+ ..+|.|++...+..- --.|+-.+.-.--..|-.+--.+....+.+++|+.
T Consensus 90 ~I~~~~~vG~~v~i-------~s~~~l~~~lg~~~~~~~Sl~p--kSVTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~ 160 (231)
T PRK10711 90 SIISICFIGSVVAM-------VTGTAVALWMGATPEIAASILP--KSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAV 160 (231)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHCcCHHHHHHHhh--hhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 34455555554432 233444 578888776653211 11111111111123344555667778889999999
Q ss_pred HHHHHHHHh
Q 048232 395 WGQYFIRKL 403 (455)
Q Consensus 395 iG~~l~~~i 403 (455)
+|..+.+..
T Consensus 161 ~g~~llk~~ 169 (231)
T PRK10711 161 FGHTLLNAM 169 (231)
T ss_pred HHHHHHHHc
Confidence 999988765
No 71
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=20.01 E-value=6.9e+02 Score=23.00 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=10.1
Q ss_pred cHHHHHHHHHHHHHHHH
Q 048232 160 PYWLITVLIIILFLGTS 176 (455)
Q Consensus 160 p~~~l~~l~~ilLl~~~ 176 (455)
.+..+..++++.++...
T Consensus 77 KpTii~~l~a~~ll~s~ 93 (176)
T PF04279_consen 77 KPTIINWLFAAVLLGSL 93 (176)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 35566667766665543
Done!