Query 048232
Match_columns 455
No_of_seqs 256 out of 1814
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 13:07:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048232.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048232hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 14.9 7.5E+02 0.026 24.3 10.3 10 122-131 393-402 (511)
2 3iyz_A Aquaporin-4; water tran 13.7 6.3E+02 0.021 24.6 8.7 33 371-403 121-153 (340)
3 1y32_A Humanin; solution struc 12.3 98 0.0033 18.4 1.4 7 3-9 1-7 (26)
4 3c02_A Aquaglyceroporin; membr 10.5 4.3E+02 0.015 24.4 6.2 36 369-404 75-110 (258)
5 3gd8_A Aquaporin-4; proton exc 10.4 3.8E+02 0.013 24.3 5.7 33 371-403 73-105 (223)
6 3llq_A Aquaporin Z 2; aquapori 10.3 3.5E+02 0.012 25.3 5.4 33 371-403 98-130 (256)
7 2o9g_A Aquaporin Z; integral m 10.1 4.1E+02 0.014 24.2 5.8 34 370-403 72-105 (234)
8 3d9s_A Aquaporin-5, AQP-5; aqu 9.8 4.2E+02 0.014 24.8 5.8 34 370-403 76-109 (266)
9 2w2e_A AQY1, aquaporin, aquapo 9.8 4.1E+02 0.014 25.0 5.8 35 369-403 117-151 (279)
10 1j4n_A Aquaporin 1; membrane p 9.6 4.2E+02 0.014 24.8 5.8 34 370-403 84-117 (271)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=14.91 E-value=7.5e+02 Score=24.31 Aligned_cols=10 Identities=20% Similarity=0.311 Sum_probs=4.9
Q ss_pred hcCCCCCCCC
Q 048232 122 RVPHPTKDVP 131 (455)
Q Consensus 122 ~~~~p~~~~p 131 (455)
|+++|..++|
T Consensus 393 r~~~~~~~~~ 402 (511)
T 4djk_A 393 VLKHPDLKRT 402 (511)
T ss_dssp HHHCCSCCCS
T ss_pred HHhCCCCCCC
Confidence 4455544444
No 2
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=13.73 E-value=6.3e+02 Score=24.63 Aligned_cols=33 Identities=9% Similarity=0.268 Sum_probs=27.8
Q ss_pred HHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048232 371 FYLLKRFPIPYALYLMAVSVLAGFWGQYFIRKL 403 (455)
Q Consensus 371 ~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~~i 403 (455)
.+..|+++|..+..+++.-++|+++|+.+++-+
T Consensus 121 l~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~ 153 (340)
T 3iyz_A 121 MVCTRKISIAKSVFYITAQCLGAIIGAGILYLV 153 (340)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456699999999999999999999999887654
No 3
>1y32_A Humanin; solution structure, alzheimer'S disease, neuroprotection, unknown function; NMR {Synthetic} PDB: 2gd3_A
Probab=12.34 E-value=98 Score=18.37 Aligned_cols=7 Identities=71% Similarity=1.146 Sum_probs=4.8
Q ss_pred cchhhHH
Q 048232 3 MATRGFV 9 (455)
Q Consensus 3 ~~~~~~~ 9 (455)
|+||||-
T Consensus 1 Ma~rgFs 7 (26)
T 1y32_A 1 MAPRGFS 7 (26)
T ss_dssp CCCHHHH
T ss_pred CCCCccE
Confidence 6788763
No 4
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=10.48 E-value=4.3e+02 Score=24.43 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=30.5
Q ss_pred HHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048232 369 VEFYLLKRFPIPYALYLMAVSVLAGFWGQYFIRKLV 404 (455)
Q Consensus 369 i~~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~~i~ 404 (455)
+.....|+++|..+....+.-++|+.+|+.+++-+-
T Consensus 75 la~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~ 110 (258)
T 3c02_A 75 IGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLY 110 (258)
T ss_dssp HHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345677999999999999999999999999887653
No 5
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=10.42 E-value=3.8e+02 Score=24.29 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=28.5
Q ss_pred HHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048232 371 FYLLKRFPIPYALYLMAVSVLAGFWGQYFIRKL 403 (455)
Q Consensus 371 ~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~~i 403 (455)
....|+++|..+....+.-++|+++|+.+++-+
T Consensus 73 ~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~lv~~~ 105 (223)
T 3gd8_A 73 MVCTRKISIAKSVFYIAAQCLGAIIGAGILYLV 105 (223)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 446699999999999999999999999887654
No 6
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=10.33 E-value=3.5e+02 Score=25.26 Aligned_cols=33 Identities=12% Similarity=0.150 Sum_probs=28.2
Q ss_pred HHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048232 371 FYLLKRFPIPYALYLMAVSVLAGFWGQYFIRKL 403 (455)
Q Consensus 371 ~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~~i 403 (455)
....|+++|..+...++.-++|+++|+.+++-+
T Consensus 98 ~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~ 130 (256)
T 3llq_A 98 LTVAGRFPASSLVPYVIAQVAGAIVAAAALYVI 130 (256)
T ss_dssp HHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456699999999999999999999999887654
No 7
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=10.05 E-value=4.1e+02 Score=24.21 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=28.8
Q ss_pred HHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048232 370 EFYLLKRFPIPYALYLMAVSVLAGFWGQYFIRKL 403 (455)
Q Consensus 370 ~~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~~i 403 (455)
.....|+++|..+....+.-++|+++|+.+++-+
T Consensus 72 a~~~~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 105 (234)
T 2o9g_A 72 GLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI 105 (234)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566799999999999999999999999877644
No 8
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=9.79 E-value=4.2e+02 Score=24.77 Aligned_cols=34 Identities=9% Similarity=0.224 Sum_probs=29.4
Q ss_pred HHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048232 370 EFYLLKRFPIPYALYLMAVSVLAGFWGQYFIRKL 403 (455)
Q Consensus 370 ~~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~~i 403 (455)
.....|+++|..+...++.-++|+++|+.+++-+
T Consensus 76 a~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~ 109 (266)
T 3d9s_A 76 ALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV 109 (266)
T ss_dssp HHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556799999999999999999999999888765
No 9
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=9.78 E-value=4.1e+02 Score=25.04 Aligned_cols=35 Identities=11% Similarity=0.179 Sum_probs=29.0
Q ss_pred HHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048232 369 VEFYLLKRFPIPYALYLMAVSVLAGFWGQYFIRKL 403 (455)
Q Consensus 369 i~~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~~i 403 (455)
+.....|+++|..+..+++.-++|+++|+.+++-+
T Consensus 117 la~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~ 151 (279)
T 2w2e_A 117 LALVLARAIPPFRGILMAFTQIVAGMAAAGAASAM 151 (279)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999999999887654
No 10
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=9.62 E-value=4.2e+02 Score=24.78 Aligned_cols=34 Identities=6% Similarity=0.139 Sum_probs=29.2
Q ss_pred HHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048232 370 EFYLLKRFPIPYALYLMAVSVLAGFWGQYFIRKL 403 (455)
Q Consensus 370 ~~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~~i 403 (455)
.....|+++|..+..+++.-++|+++|+.+++.+
T Consensus 84 a~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~ 117 (271)
T 1j4n_A 84 GLLLSCQISVLRAIMYIIAQCVGAIVATAILSGI 117 (271)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556799999999999999999999999888754
Done!