Query 048232
Match_columns 455
No_of_seqs 256 out of 1814
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 13:07:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048232.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048232hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ymga1 f.19.1.1 (A:6-239) Aqu 13.9 1.1E+02 0.0079 25.8 5.5 34 370-403 69-102 (234)
2 d1cola_ f.1.1.1 (A:) Colicin A 10.9 55 0.004 27.5 2.2 21 386-406 174-194 (197)
3 d1fx8a_ f.19.1.1 (A:) Glycerol 10.4 2.2E+02 0.016 23.9 6.5 35 369-403 68-102 (254)
4 d1rc2a_ f.19.1.1 (A:) Aquapori 8.0 1.8E+02 0.013 23.9 4.7 33 372-404 71-103 (231)
5 d1j4na_ f.19.1.1 (A:) Aquapori 7.8 2.6E+02 0.019 23.3 5.8 35 370-404 84-118 (249)
6 d1ymga1 f.19.1.1 (A:6-239) Aqu 7.2 2.4E+02 0.018 23.4 5.2 24 133-156 76-99 (234)
7 d1l7va_ f.22.1.1 (A:) ABC tran 6.2 7.3E+02 0.053 21.3 12.5 45 313-357 233-280 (324)
8 d1pw4a_ f.38.1.1 (A:) Glycerol 6.0 7E+02 0.051 20.7 21.2 18 143-160 163-180 (447)
9 d1ciia1 f.1.1.1 (A:451-624) Co 4.9 1.9E+02 0.014 23.5 2.7 19 386-404 153-171 (174)
10 d1fx8a_ f.19.1.1 (A:) Glycerol 4.5 8.3E+02 0.06 19.8 12.5 58 345-406 195-252 (254)
No 1
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.86 E-value=1.1e+02 Score=25.76 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=30.0
Q ss_pred HHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048232 370 EFYLLKRFPIPYALYLMAVSVLAGFWGQYFIRKL 403 (455)
Q Consensus 370 ~~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~~i 403 (455)
.++..|+++|...+...+.-++|+.+|+.+++.+
T Consensus 69 a~~~~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 102 (234)
T d1ymga1 69 AFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSV 102 (234)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCChhheeeeeehHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999888755
No 2
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=10.86 E-value=55 Score=27.47 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q 048232 386 MAVSVLAGFWGQYFIRKLVAI 406 (455)
Q Consensus 386 ~~~~~vGa~iG~~l~~~i~~~ 406 (455)
++.+++++++.-.++.++.+.
T Consensus 174 li~~~v~alIdd~~~~~iN~~ 194 (197)
T d1cola_ 174 LLAAVVGALIDDKFADALNNE 194 (197)
T ss_dssp HHHHHHHHHHCTHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 566666777666666666543
No 3
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=10.42 E-value=2.2e+02 Score=23.89 Aligned_cols=35 Identities=14% Similarity=0.296 Sum_probs=29.8
Q ss_pred HHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048232 369 VEFYLLKRFPIPYALYLMAVSVLAGFWGQYFIRKL 403 (455)
Q Consensus 369 i~~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~~i 403 (455)
+..+..|+++|.......+.-++|+.+|+.+.+-+
T Consensus 68 la~~i~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 102 (254)
T d1fx8a_ 68 IALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGL 102 (254)
T ss_dssp HHHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999887654
No 4
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=7.98 E-value=1.8e+02 Score=23.93 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=28.9
Q ss_pred HHcCcccHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048232 372 YLLKRFPIPYALYLMAVSVLAGFWGQYFIRKLV 404 (455)
Q Consensus 372 ~~~G~i~~~~al~l~~~~~vGa~iG~~l~~~i~ 404 (455)
...|+++|..++...+.-++|+.+|+.+.+-+.
T Consensus 71 ~~~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~i~ 103 (231)
T d1rc2a_ 71 WAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIA 103 (231)
T ss_dssp HHTTCSCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467999999999999999999999998877653
No 5
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.82 E-value=2.6e+02 Score=23.27 Aligned_cols=35 Identities=6% Similarity=0.135 Sum_probs=29.7
Q ss_pred HHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048232 370 EFYLLKRFPIPYALYLMAVSVLAGFWGQYFIRKLV 404 (455)
Q Consensus 370 ~~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~~i~ 404 (455)
..+..|++++...+...+.-++|+.+|+.+.+.+.
T Consensus 84 a~~~~g~i~~~~~~~Yi~aQ~lGa~~g~~~~~~~~ 118 (249)
T d1j4na_ 84 GLLLSCQISVLRAIMYIIAQCVGAIVATAILSGIT 118 (249)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccccchhheeeeeeHHHHHHHHHHhhheeec
Confidence 35567999999999999999999999998876653
No 6
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.23 E-value=2.4e+02 Score=23.35 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=22.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Q 048232 133 LDYDLALLFQPMLLLGITVGVALS 156 (455)
Q Consensus 133 Id~~~~~~l~~~~l~Ga~lGa~l~ 156 (455)
++|+......++-++|+.+|+.+.
T Consensus 76 i~~~~~~~Yi~aQ~lGa~~ga~l~ 99 (234)
T d1ymga1 76 MSLLRAICYMVAQLLGAVAGAAVL 99 (234)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhheeeeeehHHHHHHHHHHHH
Confidence 999999999999999999998765
No 7
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=6.24 E-value=7.3e+02 Score=21.26 Aligned_cols=45 Identities=16% Similarity=-0.082 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhhhcccc-hhhhHHHHH-H-HcCCChHHHHHHHH
Q 048232 313 IAFCAFCGILGGTVGGLLGSG-GGFILGPLL-L-EIGVIPQVASATAT 357 (455)
Q Consensus 313 ~~~~~~~g~~aG~~sGllGiG-GG~il~P~L-l-~~Gi~p~~A~ATs~ 357 (455)
........++++....+.|.= ==-+++|-+ . ..|-+.+...-.|.
T Consensus 233 ~~~l~~~~ll~a~~va~~G~I~FvGLi~PhiaR~l~g~~~~~~lp~s~ 280 (324)
T d1l7va_ 233 NVLVAATGWMVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCA 280 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCSSSSHHHHHHHHTTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhHHhHHHHHHHhcCCCccHHHHHHH
Confidence 344555666666655444421 111677877 3 34555555443333
No 8
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=5.98 E-value=7e+02 Score=20.74 Aligned_cols=18 Identities=6% Similarity=-0.400 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 048232 143 PMLLLGITVGVALSVVFP 160 (455)
Q Consensus 143 ~~~l~Ga~lGa~l~~~lp 160 (455)
.+.++|..++..+.....
T Consensus 163 ~g~~i~~~~~~~~~~~~~ 180 (447)
T d1pw4a_ 163 VGGGIPPLLFLLGMAWFN 180 (447)
T ss_dssp HHHTSHHHHHHHHHHHTC
T ss_pred hhhhhhhhhhhhHhhhhh
Confidence 344455555555544443
No 9
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId: 562]}
Probab=4.93 E-value=1.9e+02 Score=23.50 Aligned_cols=19 Identities=11% Similarity=0.226 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 048232 386 MAVSVLAGFWGQYFIRKLV 404 (455)
Q Consensus 386 ~~~~~vGa~iG~~l~~~i~ 404 (455)
++.+++|+++.-.++.++.
T Consensus 153 li~~~v~a~Idd~~v~~iN 171 (174)
T d1ciia1 153 LLMAVTGALIDESLVEKAN 171 (174)
T ss_dssp HHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHh
Confidence 4566777777666666554
No 10
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=4.49 E-value=8.3e+02 Score=19.80 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=36.8
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 048232 345 IGVIPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLMAVSVLAGFWGQYFIRKLVAI 406 (455)
Q Consensus 345 ~Gi~p~~A~ATs~~~~~fts~~s~i~~~~~G~i~~~~al~l~~~~~vGa~iG~~l~~~i~~~ 406 (455)
..++|.++-+-..+.-.. .--.....+.-+|++.....++-++|+.+++.+-+.+..|
T Consensus 195 ~s~NPAR~lgpai~~~~~----~~~~~~~~~~~~~~~~wvy~vgP~~Ga~ia~~~y~~l~~~ 252 (254)
T d1fx8a_ 195 FAMNPARDFGPKVFAWLA----GWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGR 252 (254)
T ss_dssp CCCCHHHHHHHHHHHHHT----TTTTHHHHTTCSSCTTHHHHHTTHHHHHHHHHHHHHHTGG
T ss_pred cccChHHHHHHHHHHhhc----ccccccccCCCCCCeeehHhHHHHHHHHHHHHHHHHHHhh
Confidence 458898888766654111 0001123344577788888888899999998877665443
Done!