BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048235
(455 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255586263|ref|XP_002533784.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526285|gb|EEF28597.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 856
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/438 (74%), Positives = 370/438 (84%), Gaps = 4/438 (0%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
MSSYPD VAY IAVTLGQAGH+++LFDVIDSMRS PKKKFK + +WDPRLEPDIVVY
Sbjct: 400 MSSYPDLVAYHCIAVTLGQAGHMEQLFDVIDSMRSPPKKKFKMAAVHKWDPRLEPDIVVY 459
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
NAVLNACV+RKQWEGAFWVLQQLKQQG +PS TTYGL+MEVM ACGKYNLV+EFFRKVQK
Sbjct: 460 NAVLNACVQRKQWEGAFWVLQQLKQQGLQPSTTTYGLIMEVMFACGKYNLVHEFFRKVQK 519
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
S IPNAL YKVLVNTLWREGKTDEAV AVE+MERRGIVG AALYYDLARCLCSAG+C+EA
Sbjct: 520 SSIPNALVYKVLVNTLWREGKTDEAVLAVEEMERRGIVGFAALYYDLARCLCSAGRCQEA 579
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240
L+Q++KIC+VANKPLVV+YTGLIQACLDSGNI NA YIFNQMK+FCSPNLVT N+M+KAY
Sbjct: 580 LLQIEKICRVANKPLVVTYTGLIQACLDSGNIHNAVYIFNQMKHFCSPNLVTFNVMLKAY 639
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
EHGLFE+A +LF +M EDSNHI +D K VIPDIYTFNTMLDAC +EK WDD E VY
Sbjct: 640 FEHGLFEDAKELFHKMTEDSNHIRGNHDYKVRVIPDIYTFNTMLDACISEKSWDDFEYVY 699
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLEN 360
+RMLHHG HFN KRHLRMILDASRAGKVE LE+TW+HLARADRI PP LIKERF LE
Sbjct: 700 RRMLHHGFHFNGKRHLRMILDASRAGKVEPLEMTWKHLARADRIPPPNLIKERFRIMLEK 759
Query: 361 KDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSP 420
D SA++C+ ++P+ SP F + AWL FKEN++ +DTLIQL HE S + P
Sbjct: 760 DDCKSALACITTNPMGESPAFHKVAWLNLFKENAEQIRRDTLIQLKHEVSMLVN----PP 815
Query: 421 YPVLQNLISSCKDFLRTQ 438
PVLQNL++SC DFL +Q
Sbjct: 816 DPVLQNLLASCNDFLNSQ 833
>gi|356541058|ref|XP_003539000.1| PREDICTED: pentatricopeptide repeat-containing protein At1g30610,
chloroplastic-like [Glycine max]
Length = 893
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/435 (69%), Positives = 366/435 (84%), Gaps = 1/435 (0%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
MSSYPD VAY SIAVTLGQAGH+KELFDVID MRS PKKKFKTG E WDPRLEPDIVVY
Sbjct: 445 MSSYPDLVAYHSIAVTLGQAGHMKELFDVIDIMRSPPKKKFKTGIFENWDPRLEPDIVVY 504
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
+AVLNACVRRKQWEGAFWVLQQLK+QGQ PSATTYGLVMEVML+CGKYNLV+EFFRK+QK
Sbjct: 505 HAVLNACVRRKQWEGAFWVLQQLKKQGQPPSATTYGLVMEVMLSCGKYNLVHEFFRKLQK 564
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
S+ PN+L Y+VLVNTLW+EGK DEA+ AV++MERRGIVGSA+LYYDLARCL +AG+ EA
Sbjct: 565 SFSPNSLTYRVLVNTLWQEGKPDEAILAVQEMERRGIVGSASLYYDLARCLSAAGRSHEA 624
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240
L Q+DKICKVANKPLVV+YTGL+QA LD+GNIQ+ AYIF +MK C+PNLVTCNI++KAY
Sbjct: 625 LKQIDKICKVANKPLVVTYTGLMQASLDAGNIQDGAYIFEKMKEICAPNLVTCNIILKAY 684
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
LEHG+F+EA LF++M+E++N + D K LV+PD Y+FNTMLDAC AEKRWD + VY
Sbjct: 685 LEHGMFQEAKVLFEQMSENANRLRGNTDYKMLVVPDTYSFNTMLDACVAEKRWDYFDHVY 744
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLEN 360
+RML+HG HFN KRHLRMIL+AS+AGK LEITW+HL DRI P LIKERFC +LE
Sbjct: 745 QRMLYHGYHFNPKRHLRMILEASKAGKERPLEITWKHLTDTDRIPPAPLIKERFCAKLEK 804
Query: 361 KDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSP 420
DY +A++C++++P FS+++WLK FKENSQ F +DT++ L++EA S++ + N P
Sbjct: 805 DDYVAALTCIINNPPKDLQPFSKSSWLKLFKENSQRFQKDTIVGLMNEA-SNIVSNNSFP 863
Query: 421 YPVLQNLISSCKDFL 435
P L+ LI SCK+FL
Sbjct: 864 NPTLEYLIQSCKEFL 878
>gi|225444167|ref|XP_002268516.1| PREDICTED: pentatricopeptide repeat-containing protein At1g30610,
chloroplastic-like [Vitis vinifera]
Length = 846
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/439 (73%), Positives = 366/439 (83%), Gaps = 3/439 (0%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
MSSYPD VAY IAVTLGQAGH+KELFDVID MRS P+KKFKTG LE+WDPRLEPDIVVY
Sbjct: 383 MSSYPDLVAYHCIAVTLGQAGHMKELFDVIDCMRSPPRKKFKTGALEKWDPRLEPDIVVY 442
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
NAVLNACVRRKQWEGAFWVLQQLKQQ QKPS TTYGLVMEVM CGKYNLV+EFF KVQK
Sbjct: 443 NAVLNACVRRKQWEGAFWVLQQLKQQSQKPSITTYGLVMEVMFVCGKYNLVHEFFWKVQK 502
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
S IPNAL YKVLVNTLWREGKTDEAV AV+DME+RG+VGSAALYYDLARCLCSAG+C+EA
Sbjct: 503 SSIPNALTYKVLVNTLWREGKTDEAVLAVQDMEKRGVVGSAALYYDLARCLCSAGRCQEA 562
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240
LMQ++KICKVANKPLVV+YTGLIQ CLDSGNIQNAA+IFNQM FCSPNL+TCN+M+KAY
Sbjct: 563 LMQIEKICKVANKPLVVTYTGLIQVCLDSGNIQNAAFIFNQMHEFCSPNLITCNVMLKAY 622
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
LEH +FEEA LF +M D NHI+ + D V+PDIYTFNTM+DAC AEKRW DLE VY
Sbjct: 623 LEHRMFEEAKGLFGKMLGDGNHISSKSDYNDRVLPDIYTFNTMIDACNAEKRWHDLEYVY 682
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLEN 360
+RML HG HFNAKRHLR+ILDASRAGK ELLE TW+ LA R+ PP LIKERFC +LE
Sbjct: 683 ERMLRHGFHFNAKRHLRIILDASRAGKEELLETTWKSLAGEGRV-PPPLIKERFCMKLEK 741
Query: 361 KDYGSAISCLVSHPVSGSPE-FSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGS 419
D +A+S + H ++ E FS+ AWL F EN+ F ++L++L+HEAS + R
Sbjct: 742 GDCAAAVSSITGHHMNELQEPFSKRAWLNLFTENAGRFQTESLVELMHEASVRI-ARADM 800
Query: 420 PYPVLQNLISSCKDFLRTQ 438
P PVLQNL++SCK+FLRT
Sbjct: 801 PNPVLQNLLASCKEFLRTH 819
>gi|297740901|emb|CBI31083.3| unnamed protein product [Vitis vinifera]
Length = 647
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/439 (73%), Positives = 366/439 (83%), Gaps = 3/439 (0%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
MSSYPD VAY IAVTLGQAGH+KELFDVID MRS P+KKFKTG LE+WDPRLEPDIVVY
Sbjct: 107 MSSYPDLVAYHCIAVTLGQAGHMKELFDVIDCMRSPPRKKFKTGALEKWDPRLEPDIVVY 166
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
NAVLNACVRRKQWEGAFWVLQQLKQQ QKPS TTYGLVMEVM CGKYNLV+EFF KVQK
Sbjct: 167 NAVLNACVRRKQWEGAFWVLQQLKQQSQKPSITTYGLVMEVMFVCGKYNLVHEFFWKVQK 226
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
S IPNAL YKVLVNTLWREGKTDEAV AV+DME+RG+VGSAALYYDLARCLCSAG+C+EA
Sbjct: 227 SSIPNALTYKVLVNTLWREGKTDEAVLAVQDMEKRGVVGSAALYYDLARCLCSAGRCQEA 286
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240
LMQ++KICKVANKPLVV+YTGLIQ CLDSGNIQNAA+IFNQM FCSPNL+TCN+M+KAY
Sbjct: 287 LMQIEKICKVANKPLVVTYTGLIQVCLDSGNIQNAAFIFNQMHEFCSPNLITCNVMLKAY 346
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
LEH +FEEA LF +M D NHI+ + D V+PDIYTFNTM+DAC AEKRW DLE VY
Sbjct: 347 LEHRMFEEAKGLFGKMLGDGNHISSKSDYNDRVLPDIYTFNTMIDACNAEKRWHDLEYVY 406
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLEN 360
+RML HG HFNAKRHLR+ILDASRAGK ELLE TW+ LA R+ PP LIKERFC +LE
Sbjct: 407 ERMLRHGFHFNAKRHLRIILDASRAGKEELLETTWKSLAGEGRV-PPPLIKERFCMKLEK 465
Query: 361 KDYGSAISCLVSHPVSGSPE-FSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGS 419
D +A+S + H ++ E FS+ AWL F EN+ F ++L++L+HEAS + R
Sbjct: 466 GDCAAAVSSITGHHMNELQEPFSKRAWLNLFTENAGRFQTESLVELMHEASVRI-ARADM 524
Query: 420 PYPVLQNLISSCKDFLRTQ 438
P PVLQNL++SCK+FLRT
Sbjct: 525 PNPVLQNLLASCKEFLRTH 543
>gi|224061585|ref|XP_002300553.1| predicted protein [Populus trichocarpa]
gi|222847811|gb|EEE85358.1| predicted protein [Populus trichocarpa]
Length = 642
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/471 (66%), Positives = 370/471 (78%), Gaps = 26/471 (5%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M YPD VAYRSIAVTLGQAG++KELFDVIDSMRS P KKFK+G + D LEPD+VVY
Sbjct: 174 MCLYPDLVAYRSIAVTLGQAGYMKELFDVIDSMRS-PPKKFKSGAPGKRDLGLEPDLVVY 232
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
NAVLNACVRRKQWEGAFWVLQQ+K++G +PS TYGLVMEVMLACGKYNLV+EFF+KVQK
Sbjct: 233 NAVLNACVRRKQWEGAFWVLQQMKEKGVQPSTATYGLVMEVMLACGKYNLVHEFFKKVQK 292
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
S IPNAL YKVLVNT WREGKT+EAV AV+DMERRGIVGSAALYYDLARCLC++G+C+EA
Sbjct: 293 SSIPNALVYKVLVNTFWREGKTEEAVLAVKDMERRGIVGSAALYYDLARCLCTSGRCQEA 352
Query: 181 L------------------------MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
L ++KICKVANKPLVV+YTGL+QACLDSGNIQNA
Sbjct: 353 LDLVIILCLIYYVSVVHVYLKLNLKNTIEKICKVANKPLVVTYTGLVQACLDSGNIQNAV 412
Query: 217 YIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
YIFNQM+NFC PNLVTCNIM+KAYLEHGLFEEA +LF +M +D NHI+R D K VIPD
Sbjct: 413 YIFNQMRNFCPPNLVTCNIMLKAYLEHGLFEEANELFNKMLDDGNHISRRSDYKFRVIPD 472
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWE 336
IYTFNTMLDA AE +WDD E VY++ML HG HFNA RHLRM+LDASRAGK E+LEITW+
Sbjct: 473 IYTFNTMLDASIAENKWDDFEYVYQKMLRHGFHFNANRHLRMVLDASRAGKGEVLEITWK 532
Query: 337 HLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQH 396
HLA+ DRI PP L+KERFC LE +D+ SA++C+ ++ S F ++AWL F+EN+Q
Sbjct: 533 HLAQEDRIPPPPLVKERFCMMLEKEDFDSALACITTNSAGESQAFCKSAWLNLFEENAQR 592
Query: 397 FGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQSPAPVVNLT 447
F +DTL++L+HE L ++ SP PVLQNL+ SC D+ R + P N T
Sbjct: 593 FRKDTLMRLMHEV-RVLAAQSNSPNPVLQNLLISCSDYNRPRVKVPGFNQT 642
>gi|334182963|ref|NP_001185117.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332193129|gb|AEE31250.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 978
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/445 (68%), Positives = 361/445 (81%), Gaps = 12/445 (2%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+SSYPD VAYRSIAVTLGQAGHIKELF VID+MRS PKKKFK TLE+WDPRLEPD+VVY
Sbjct: 537 ISSYPDMVAYRSIAVTLGQAGHIKELFYVIDTMRSPPKKKFKPTTLEKWDPRLEPDVVVY 596
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
NAVLNACV+RKQWEGAFWVLQQLKQ+GQKPS TYGL+MEVMLAC KYNLV+EFFRK+QK
Sbjct: 597 NAVLNACVQRKQWEGAFWVLQQLKQRGQKPSPVTYGLIMEVMLACEKYNLVHEFFRKMQK 656
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
S IPNALAY+VLVNTLW+EGK+DEAV VEDME RGIVGSAALYYDLARCLCSAG+C E
Sbjct: 657 SSIPNALAYRVLVNTLWKEGKSDEAVHTVEDMESRGIVGSAALYYDLARCLCSAGRCNEG 716
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240
L + KIC+VANKPLVV+YTGLIQAC+DSGNI+NAAYIF+QMK CSPNLVTCNIM+KAY
Sbjct: 717 LNMLKKICRVANKPLVVTYTGLIQACVDSGNIKNAAYIFDQMKKVCSPNLVTCNIMLKAY 776
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
L+ GLFEEA +LFQ+M+ED NHI D + V+PD YTFNTMLD CA +++WDD Y
Sbjct: 777 LQGGLFEEARELFQKMSEDGNHIKNSSDFESRVLPDTYTFNTMLDTCAEQEKWDDFGYAY 836
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLEN 360
+ ML HG HFNAKRHLRM+L+ASRAGK E++E TWEH+ R++RI P LIKERF +LE
Sbjct: 837 REMLRHGYHFNAKRHLRMVLEASRAGKEEVMEATWEHMRRSNRIPPSPLIKERFFRKLEK 896
Query: 361 KDYGSAISCLVSHPVSGSPE------FSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLT 414
D+ SAIS L ++G E FS +AW + F QD++++L+ + + L
Sbjct: 897 GDHISAISSLAD--LNGKIEETELRAFSTSAWSRVL----SRFEQDSVLRLMDDVNRRLG 950
Query: 415 TRNGSPYPVLQNLISSCKDFLRTQS 439
+R+ S VL NL+SSCKD+L+T++
Sbjct: 951 SRSESSDSVLGNLLSSCKDYLKTRT 975
>gi|297846000|ref|XP_002890881.1| EMB2279 [Arabidopsis lyrata subsp. lyrata]
gi|297336723|gb|EFH67140.1| EMB2279 [Arabidopsis lyrata subsp. lyrata]
Length = 913
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/459 (66%), Positives = 363/459 (79%), Gaps = 22/459 (4%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+SSYPD VAYRSIAVTLGQAGHIKELF VID+MRS PKKKFK TLE+WDPRLEPD+VVY
Sbjct: 460 ISSYPDMVAYRSIAVTLGQAGHIKELFHVIDTMRSPPKKKFKPTTLEKWDPRLEPDVVVY 519
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
NAVLNACV+RKQWEGAFWVLQQLKQ+GQKPS TYGLVMEVMLAC KYNLV+EFFRK+QK
Sbjct: 520 NAVLNACVQRKQWEGAFWVLQQLKQRGQKPSPVTYGLVMEVMLACEKYNLVHEFFRKMQK 579
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
S IPNALAY+VLVNTLW+EGK+DEA+ VEDME RGIVGSAALYYDLARCLCSAG+C EA
Sbjct: 580 SSIPNALAYRVLVNTLWKEGKSDEAIHTVEDMESRGIVGSAALYYDLARCLCSAGRCNEA 639
Query: 181 L----------MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNL 230
L Q++KIC+VANKPLVV+YTGLIQACLDSGNI+NAAYIF+ MK CSPNL
Sbjct: 640 LNMADLDHTIQCQLNKICRVANKPLVVTYTGLIQACLDSGNIKNAAYIFDHMKKVCSPNL 699
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VTCNIM+KAYL+ G FEEA +LFQ+M+ED NHI D + V+PD+YTFNTMLD CA +
Sbjct: 700 VTCNIMIKAYLQGGFFEEARELFQKMSEDGNHIKISSDFESRVLPDMYTFNTMLDVCAEQ 759
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
K+WDD Y+ MLHHG HFNAKRHLRM+L+ASRAGK E++E TWEH+ R++RI P LI
Sbjct: 760 KKWDDFGYAYREMLHHGYHFNAKRHLRMVLEASRAGKEEVMEATWEHMRRSNRIPPSPLI 819
Query: 351 KERFCNRLENKDYGSAISCLVSHPVSGSPE------FSRNAWLKFFKENSQHFGQDTLIQ 404
KERF +LE D+ SAIS L + G E FS +AW + + F QD++++
Sbjct: 820 KERFFRKLEKGDHISAISSLAD--LDGKIEETELRAFSTSAWSRVLSQ----FEQDSVLR 873
Query: 405 LLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQSPAPV 443
L+ + + +RN S VL NL+SSCK+FL+ ++ V
Sbjct: 874 LMDDVKRRVGSRNESSDSVLGNLLSSCKEFLKNRTQGVV 912
>gi|147821457|emb|CAN72260.1| hypothetical protein VITISV_035448 [Vitis vinifera]
Length = 1032
Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust.
Identities = 322/475 (67%), Positives = 365/475 (76%), Gaps = 39/475 (8%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
MSSYPD VAY IAVTLGQAGH+KELFDVID MRS P+KKFKTG LE+WDPRLEPDI+VY
Sbjct: 533 MSSYPDLVAYHCIAVTLGQAGHMKELFDVIDCMRSPPRKKFKTGALEKWDPRLEPDIIVY 592
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV------------------- 101
NAVLNACVRRKQWEGAFWVLQQLKQQ QKPS TTYGLVMEV
Sbjct: 593 NAVLNACVRRKQWEGAFWVLQQLKQQSQKPSITTYGLVMEVVTLIETDSGGKSWLTNLVG 652
Query: 102 -----------------MLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDE 144
M CGKYNLV+EFF KVQKS IPNAL YKVLVNTLWREGKTDE
Sbjct: 653 FGREEGLEYIVEVDIGVMFVCGKYNLVHEFFWKVQKSSIPNALTYKVLVNTLWREGKTDE 712
Query: 145 AVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204
AV AV+DME+RG+VGSAALYYDLARCLC AG+C+EALMQ++KICKVANKPLVV+YTGLIQ
Sbjct: 713 AVLAVQDMEKRGVVGSAALYYDLARCLCXAGRCQEALMQIEKICKVANKPLVVTYTGLIQ 772
Query: 205 ACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
ACLDSGNIQNAA+IFNQM FCSPNL+TCN+M+KAYLEH +FEEA +LF +M D N I+
Sbjct: 773 ACLDSGNIQNAAFIFNQMHEFCSPNLITCNVMLKAYLEHRMFEEAKELFGKMLGDGNRIS 832
Query: 265 REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASR 324
+ D V+PDIYTFNTM+DAC AEKRW DLE VY+RML HG HFNAKRHLR+ILDASR
Sbjct: 833 SKSDYNDRVLPDIYTFNTMIDACBAEKRWHDLEYVYERMLRHGFHFNAKRHLRIILDASR 892
Query: 325 AGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPE-FSR 383
AGK ELLE TW+ LA R+ PP LIKERFC +LE D +A+S + H + E FS+
Sbjct: 893 AGKEELLETTWKXLAGEGRV-PPPLIKERFCMKLEKGDCAAAVSSITGHXMKELQEPFSK 951
Query: 384 NAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQ 438
AWL F EN+ F ++L++L+HEA S L R P PVLQNL++SCK+FLRT
Sbjct: 952 RAWLNLFTENAGRFQTESLVELMHEA-SVLIARADMPNPVLQNLLASCKEFLRTH 1005
>gi|449435940|ref|XP_004135752.1| PREDICTED: pentatricopeptide repeat-containing protein At1g30610,
chloroplastic-like [Cucumis sativus]
Length = 902
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 301/438 (68%), Positives = 355/438 (81%), Gaps = 3/438 (0%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
SSYPD VAY SIAVTLGQAG+++ELFDVIDSMRS PKKKFKTG LE+WDPRL+PDIV+Y
Sbjct: 455 FSSYPDLVAYHSIAVTLGQAGYMRELFDVIDSMRSPPKKKFKTGVLEKWDPRLQPDIVIY 514
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
NAVLNACV+RK EGAFWVLQ+LK+Q +PS +TYGLVMEVML CGKYNLV+EFFRKVQK
Sbjct: 515 NAVLNACVKRKNLEGAFWVLQELKKQSLQPSTSTYGLVMEVMLECGKYNLVHEFFRKVQK 574
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
S IPNAL YKVLVNTLW+EGKTDEAV A+E+ME RGIVGSAALYYD ARCLCSAG+C+EA
Sbjct: 575 SSIPNALTYKVLVNTLWKEGKTDEAVLAIENMEIRGIVGSAALYYDFARCLCSAGRCKEA 634
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240
LMQM+KICKVANKPLVV+YTGLIQACLDS ++Q+A YIFN MK FCSPNLVT NI++K Y
Sbjct: 635 LMQMEKICKVANKPLVVTYTGLIQACLDSKDLQSAVYIFNHMKAFCSPNLVTYNILLKGY 694
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
LEHG+FEEA +LFQ ++E +I+ D + V+PDIY FNTMLDA AEKRWDD Y
Sbjct: 695 LEHGMFEEARELFQNLSEQRRNISTVSDYRDRVLPDIYMFNTMLDASFAEKRWDDFSYFY 754
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLEN 360
+M +G HFN KRHLRMIL+A+R GK ELLE TW+HLA+ADR PP L+KERFC +L
Sbjct: 755 NQMFLYGYHFNPKRHLRMILEAARGGKDELLETTWKHLAQADRTPPPPLLKERFCMKLAR 814
Query: 361 KDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSP 420
DY A+S + SH + FS +AWL KE + F +DT+I+L+H+ L TRN SP
Sbjct: 815 GDYSEALSSIWSHNSGDAHHFSESAWLNLLKE--KRFPRDTVIELIHKVGMVL-TRNESP 871
Query: 421 YPVLQNLISSCKDFLRTQ 438
PV +NL+ SCK+F RT+
Sbjct: 872 NPVFKNLLLSCKEFCRTR 889
>gi|449530674|ref|XP_004172319.1| PREDICTED: pentatricopeptide repeat-containing protein At1g30610,
chloroplastic-like, partial [Cucumis sativus]
Length = 477
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 301/438 (68%), Positives = 355/438 (81%), Gaps = 3/438 (0%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
SSYPD VAY SIAVTLGQAG+++ELFDVIDSMRS PKKKFKTG LE+WDPRL+PDIV+Y
Sbjct: 30 FSSYPDLVAYHSIAVTLGQAGYMRELFDVIDSMRSPPKKKFKTGVLEKWDPRLQPDIVIY 89
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
NAVLNACV+RK EGAFWVLQ+LK+Q +PS +TYGLVMEVML CGKYNLV+EFFRKVQK
Sbjct: 90 NAVLNACVKRKNLEGAFWVLQELKKQSLQPSTSTYGLVMEVMLECGKYNLVHEFFRKVQK 149
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
S IPNAL YKVLVNTLW+EGKTDEAV A+E+ME RGIVGSAALYYD ARCLCSAG+C+EA
Sbjct: 150 SSIPNALTYKVLVNTLWKEGKTDEAVLAIENMEIRGIVGSAALYYDFARCLCSAGRCKEA 209
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240
LMQM+KICKVANKPLVV+YTGLIQACLDS ++Q+A YIFN MK FCSPNLVT NI++K Y
Sbjct: 210 LMQMEKICKVANKPLVVTYTGLIQACLDSKDLQSAVYIFNHMKAFCSPNLVTYNILLKGY 269
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
LEHG+FEEA +LFQ ++E +I+ D + V+PDIY FNTMLDA AEKRWDD Y
Sbjct: 270 LEHGMFEEARELFQNLSEQRRNISTVSDYRDRVLPDIYMFNTMLDASFAEKRWDDFSYFY 329
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLEN 360
+M +G HFN KRHLRMIL+A+R GK ELLE TW+HLA+ADR PP L+KERFC +L
Sbjct: 330 NQMFLYGYHFNPKRHLRMILEAARGGKDELLETTWKHLAQADRTPPPPLLKERFCMKLAR 389
Query: 361 KDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSP 420
DY A+S + SH + FS +AWL KE + F +DT+I+L+H+ L TRN SP
Sbjct: 390 GDYSEALSSIWSHNSGDAHHFSESAWLNLLKE--KRFPRDTVIELIHKVGMVL-TRNESP 446
Query: 421 YPVLQNLISSCKDFLRTQ 438
PV +NL+ SCK+F RT+
Sbjct: 447 NPVFKNLLLSCKEFCRTR 464
>gi|15221459|ref|NP_174349.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200328|sp|Q9SA76.1|PPR64_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g30610,
chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE
2279; Flags: Precursor
gi|4587517|gb|AAD25748.1|AC007060_6 T5I8.6 [Arabidopsis thaliana]
gi|332193128|gb|AEE31249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1006
Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust.
Identities = 305/473 (64%), Positives = 362/473 (76%), Gaps = 40/473 (8%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+SSYPD VAYRSIAVTLGQAGHIKELF VID+MRS PKKKFK TLE+WDPRLEPD+VVY
Sbjct: 537 ISSYPDMVAYRSIAVTLGQAGHIKELFYVIDTMRSPPKKKFKPTTLEKWDPRLEPDVVVY 596
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
NAVLNACV+RKQWEGAFWVLQQLKQ+GQKPS TYGL+MEVMLAC KYNLV+EFFRK+QK
Sbjct: 597 NAVLNACVQRKQWEGAFWVLQQLKQRGQKPSPVTYGLIMEVMLACEKYNLVHEFFRKMQK 656
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
S IPNALAY+VLVNTLW+EGK+DEAV VEDME RGIVGSAALYYDLARCLCSAG+C E
Sbjct: 657 SSIPNALAYRVLVNTLWKEGKSDEAVHTVEDMESRGIVGSAALYYDLARCLCSAGRCNEG 716
Query: 181 L----------------------------MQMDKICKVANKPLVVSYTGLIQACLDSGNI 212
L Q+ KIC+VANKPLVV+YTGLIQAC+DSGNI
Sbjct: 717 LNMVNFVNPVVLKLIENLIYKADLVHTIQFQLKKICRVANKPLVVTYTGLIQACVDSGNI 776
Query: 213 QNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGL 272
+NAAYIF+QMK CSPNLVTCNIM+KAYL+ GLFEEA +LFQ+M+ED NHI D +
Sbjct: 777 KNAAYIFDQMKKVCSPNLVTCNIMLKAYLQGGLFEEARELFQKMSEDGNHIKNSSDFESR 836
Query: 273 VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLE 332
V+PD YTFNTMLD CA +++WDD Y+ ML HG HFNAKRHLRM+L+ASRAGK E++E
Sbjct: 837 VLPDTYTFNTMLDTCAEQEKWDDFGYAYREMLRHGYHFNAKRHLRMVLEASRAGKEEVME 896
Query: 333 ITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPE------FSRNAW 386
TWEH+ R++RI P LIKERF +LE D+ SAIS L ++G E FS +AW
Sbjct: 897 ATWEHMRRSNRIPPSPLIKERFFRKLEKGDHISAISSLAD--LNGKIEETELRAFSTSAW 954
Query: 387 LKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQS 439
+ F QD++++L+ + + L +R+ S VL NL+SSCKD+L+T++
Sbjct: 955 SRVL----SRFEQDSVLRLMDDVNRRLGSRSESSDSVLGNLLSSCKDYLKTRT 1003
>gi|357130707|ref|XP_003566988.1| PREDICTED: pentatricopeptide repeat-containing protein At1g30610,
chloroplastic-like [Brachypodium distachyon]
Length = 976
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 251/436 (57%), Positives = 326/436 (74%), Gaps = 5/436 (1%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
MSSYPD AY IAVTLGQAG +KELFDVID MRS P+KKF G ++ WDPRLEPD++VY
Sbjct: 529 MSSYPDIAAYHCIAVTLGQAGLVKELFDVIDCMRSPPRKKFMAGPVQNWDPRLEPDLIVY 588
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
NAVLNACV++KQWEG FWVLQQLK++ +P+ TTYGLVMEVML CGKYNLVYEFF +V++
Sbjct: 589 NAVLNACVQQKQWEGTFWVLQQLKEKNIRPTNTTYGLVMEVMLVCGKYNLVYEFFDRVKQ 648
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
IP AL YKVLVN LWREGK DEAV AV+DME+RGIVGSA+LYYDLARCLCS G+C+EA
Sbjct: 649 KSIPGALNYKVLVNALWREGKIDEAVMAVKDMEKRGIVGSASLYYDLARCLCSGGRCKEA 708
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240
L+Q++KICKVANKPLVV+YTGLIQ C+DSG+++NA YIFN+M ++CSPN VTCNIM+K+Y
Sbjct: 709 LLQVEKICKVANKPLVVTYTGLIQICIDSGSMENAKYIFNEMCSYCSPNNVTCNIMLKSY 768
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+EHG+FE+A L + + + I + D D +TFNT L+ACA K+W+D E +
Sbjct: 769 IEHGMFEDAKDLLENIL--NGRIGSKLDSSQTAEADKFTFNTFLEACAEAKKWNDFEDAF 826
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLEN 360
++ML +G HF+ +RHLRM+LDA R GK +LLE W++L R+ P +I ERFC +L
Sbjct: 827 RKMLSNGYHFDERRHLRMVLDAYRNGKEQLLENIWDYLCHHGRVPPVPMIMERFCLKLRQ 886
Query: 361 KDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSP 420
D +A+SC+ S S S +W N+ ++++ +L+HE ++ ++ GS
Sbjct: 887 GDTTTALSCISSFQESKIRRVSSMSWFNLLNRNADRLKEESIAKLVHELNNYASS--GST 944
Query: 421 YPVL-QNLISSCKDFL 435
L QN++SSC +FL
Sbjct: 945 CDSLYQNILSSCTEFL 960
>gi|326522626|dbj|BAK07775.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 969
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 252/436 (57%), Positives = 325/436 (74%), Gaps = 5/436 (1%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+SSYPD AY IAVTLGQAG +KELFDVID MRS PKKKF G ++ WDPRLEPD++VY
Sbjct: 520 LSSYPDIAAYHCIAVTLGQAGLVKELFDVIDCMRSPPKKKFMVGPVQNWDPRLEPDLIVY 579
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
NAVLNACV++KQWEG FWVLQQLK++ +P+ TTYGLVMEVML CGKYNLVYEFF +V++
Sbjct: 580 NAVLNACVQQKQWEGTFWVLQQLKEKNIRPTNTTYGLVMEVMLVCGKYNLVYEFFDRVKQ 639
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
IP AL YKVLVN LWREGK DEAV AV+DME RGIVGSA+LYYDLARCLCS G+C+EA
Sbjct: 640 KSIPGALNYKVLVNALWREGKIDEAVMAVKDMENRGIVGSASLYYDLARCLCSGGRCKEA 699
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240
L+Q++KICKVANKPLVV+YTGLIQ C+DSG+I+NA YIF +M N+CSPN VTCNIM+K+Y
Sbjct: 700 LLQVEKICKVANKPLVVTYTGLIQICIDSGSIENAKYIFKEMCNYCSPNNVTCNIMLKSY 759
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
++HG+FE+A L + + + I + D I D +TFNT LDACA K+W++ E +
Sbjct: 760 IDHGMFEDAKDLLENIL--NGRIRSKADLDQQAIADKFTFNTFLDACAEAKKWNEFEYAF 817
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLEN 360
++ML +G HF+ +RHLRM+LDA R+GK +LLE W++L R R+ P A+I ERFC +L
Sbjct: 818 RKMLSNGYHFDERRHLRMVLDAYRSGKEQLLEDIWDYLCRNGRVPPAAMIMERFCLKLRQ 877
Query: 361 KDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSP 420
+A+SC+ S S S +W N+ ++++ +L+H+ +R GSP
Sbjct: 878 GHTTAALSCISSFQESKIGNVSSKSWSSLLNRNADLLEEESVAELVHKLDG--LSRPGSP 935
Query: 421 YPVL-QNLISSCKDFL 435
L +N++S C +FL
Sbjct: 936 CNSLYENVMSGCTEFL 951
>gi|222619034|gb|EEE55166.1| hypothetical protein OsJ_02981 [Oryza sativa Japonica Group]
Length = 994
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 247/435 (56%), Positives = 321/435 (73%), Gaps = 4/435 (0%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+SSYPD AY IAVTLGQ+G +KELFDVID MRS P KKFK ++ WDPRLEPD++VY
Sbjct: 544 LSSYPDMAAYHCIAVTLGQSGLVKELFDVIDRMRS-PPKKFKLSPIQNWDPRLEPDLIVY 602
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
NAVLNACV++KQWEGAFWVLQQLK++ +P+ TTYGLVMEVML CGKYNLVYEFF KV+K
Sbjct: 603 NAVLNACVQQKQWEGAFWVLQQLKEKNIRPTNTTYGLVMEVMLVCGKYNLVYEFFNKVEK 662
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ IP L YKVL+N LWREGK DEAV AV+ ME RGIVGSA+LYYDLARCLCS G+C+EA
Sbjct: 663 TSIPGTLNYKVLINALWREGKIDEAVMAVKGMESRGIVGSASLYYDLARCLCSGGRCKEA 722
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240
L+Q++KICKVANKPLVV+YTGLIQ C+D+G+++NA YIF++M +CSPN +TCNIM+K+Y
Sbjct: 723 LLQVEKICKVANKPLVVTYTGLIQTCIDNGSMENAKYIFDEMCKYCSPNNITCNIMLKSY 782
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
EHG+FE+A L + + S I + + I D +TFN ++ACA KRW+D E +
Sbjct: 783 TEHGMFEDAKDLLENIL--SGRIRSKVESSQKAIADKFTFNIFMEACAEAKRWNDFEYAF 840
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLEN 360
++ML G HF+ +RHLRM+LDA R GK +LLE W+++ + R+ P +I ERFC +L
Sbjct: 841 RKMLSSGYHFDERRHLRMVLDAYRNGKEQLLEDVWDYMCQYGRVPPAPMIMERFCLKLRQ 900
Query: 361 KDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSP 420
D +A+SC+ + S S +W N +D +I+LLHE ++L + +G
Sbjct: 901 GDTVAAMSCINTFQESKIRNVSSMSWFNLLNRNGDRLKEDIIIKLLHEL-NNLVSSSGHS 959
Query: 421 YPVLQNLISSCKDFL 435
+ QN+ISSC +FL
Sbjct: 960 DSLYQNIISSCTEFL 974
>gi|56201925|dbj|BAD73375.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|56202015|dbj|BAD73522.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 988
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 247/435 (56%), Positives = 321/435 (73%), Gaps = 4/435 (0%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+SSYPD AY IAVTLGQ+G +KELFDVID MRS P KKFK ++ WDPRLEPD++VY
Sbjct: 538 LSSYPDMAAYHCIAVTLGQSGLVKELFDVIDRMRS-PPKKFKLSPIQNWDPRLEPDLIVY 596
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
NAVLNACV++KQWEGAFWVLQQLK++ +P+ TTYGLVMEVML CGKYNLVYEFF KV+K
Sbjct: 597 NAVLNACVQQKQWEGAFWVLQQLKEKNIRPTNTTYGLVMEVMLVCGKYNLVYEFFNKVEK 656
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ IP L YKVL+N LWREGK DEAV AV+ ME RGIVGSA+LYYDLARCLCS G+C+EA
Sbjct: 657 TSIPGTLNYKVLINALWREGKIDEAVMAVKGMESRGIVGSASLYYDLARCLCSGGRCKEA 716
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240
L+Q++KICKVANKPLVV+YTGLIQ C+D+G+++NA YIF++M +CSPN +TCNIM+K+Y
Sbjct: 717 LLQVEKICKVANKPLVVTYTGLIQTCIDNGSMENAKYIFDEMCKYCSPNNITCNIMLKSY 776
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
EHG+FE+A L + + S I + + I D +TFN ++ACA KRW+D E +
Sbjct: 777 TEHGMFEDAKDLLENIL--SGRIRSKVESSQKAIADKFTFNIFMEACAEAKRWNDFEYAF 834
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLEN 360
++ML G HF+ +RHLRM+LDA R GK +LLE W+++ + R+ P +I ERFC +L
Sbjct: 835 RKMLSSGYHFDERRHLRMVLDAYRNGKEQLLEDVWDYMCQYGRVPPAPMIMERFCLKLRQ 894
Query: 361 KDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSP 420
D +A+SC+ + S S +W N +D +I+LLHE ++L + +G
Sbjct: 895 GDTVAAMSCINTFQESKIRNVSSMSWFNLLNRNGDRLKEDIIIKLLHEL-NNLVSSSGHS 953
Query: 421 YPVLQNLISSCKDFL 435
+ QN+ISSC +FL
Sbjct: 954 DSLYQNIISSCTEFL 968
>gi|218188830|gb|EEC71257.1| hypothetical protein OsI_03237 [Oryza sativa Indica Group]
Length = 994
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 248/435 (57%), Positives = 321/435 (73%), Gaps = 4/435 (0%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+SSYPD AY IAVTLGQ+G +KELFDVID MRS P KKFK ++ WDPRLEPD++VY
Sbjct: 544 LSSYPDMAAYHCIAVTLGQSGLVKELFDVIDRMRS-PPKKFKLSPIQNWDPRLEPDLIVY 602
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
NAVLNACV++KQWEGAFWVLQQLK++ +P+ TTYGLVMEVML CGKYNLVYEFF KV+K
Sbjct: 603 NAVLNACVQQKQWEGAFWVLQQLKEKNIRPTNTTYGLVMEVMLVCGKYNLVYEFFNKVEK 662
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ IP AL YKVL+N LWREGK DEAV AV+ ME RGIVGSA+LYYDLARCLCS G+C+EA
Sbjct: 663 TSIPGALNYKVLINALWREGKIDEAVMAVKGMESRGIVGSASLYYDLARCLCSGGRCKEA 722
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240
L+Q++KICKVANKPLVV+YTGLIQ C+D+G+++NA YIF++M +CSPN VTCNIM+K+Y
Sbjct: 723 LLQVEKICKVANKPLVVTYTGLIQTCIDNGSMENAKYIFDEMCKYCSPNNVTCNIMLKSY 782
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
EHG+FE+A L + + S I + + I D +TFN ++ACA KRW+D E +
Sbjct: 783 TEHGMFEDAKDLLENIL--SGRIRSKVESSQKAIADKFTFNIFMEACAEAKRWNDFEYAF 840
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLEN 360
++ML G HF+ +RHL M+LDA R GK +LLE W+++ + R+ P +I ERFC +L
Sbjct: 841 RKMLSSGYHFDERRHLHMVLDAYRNGKEQLLEDVWDYMCQYGRVPPAPMIMERFCLKLRQ 900
Query: 361 KDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSP 420
D +A+SC+ + S S +W N +D +I+LLHE ++L + +G
Sbjct: 901 GDTVAAMSCINTFQESKIRNVSSMSWFNLLNRNGDRLKEDIIIKLLHEL-NNLVSSSGHS 959
Query: 421 YPVLQNLISSCKDFL 435
+ QN+ISSC +FL
Sbjct: 960 DSLYQNIISSCTEFL 974
>gi|242053953|ref|XP_002456122.1| hypothetical protein SORBIDRAFT_03g030920 [Sorghum bicolor]
gi|241928097|gb|EES01242.1| hypothetical protein SORBIDRAFT_03g030920 [Sorghum bicolor]
Length = 937
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 252/436 (57%), Positives = 323/436 (74%), Gaps = 3/436 (0%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+SSYPD AY IAVTLGQAG +KELFDVID MRS P+KKFK L+ WDPRLEPD++VY
Sbjct: 491 LSSYPDMAAYHCIAVTLGQAGLVKELFDVIDCMRSPPRKKFKLSPLQNWDPRLEPDLIVY 550
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
NAVLNACV++KQWEGAFWVLQQLK++ +P+ +TYGLVMEVML CGKYNLVYEFF KV+K
Sbjct: 551 NAVLNACVQQKQWEGAFWVLQQLKEKNIRPTNSTYGLVMEVMLVCGKYNLVYEFFNKVEK 610
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
S IP AL YKVLVN LWREGK +EAV AV+DME RGIVGSA+LYYDLARCLCS G+C+EA
Sbjct: 611 SSIPGALNYKVLVNALWREGKINEAVMAVKDMESRGIVGSASLYYDLARCLCSGGRCKEA 670
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240
L+Q++KICKVANKPLVV+YTGLIQ C+D+G ++NA YIFN M N+CSPN VTCNIM+K+Y
Sbjct: 671 LLQVEKICKVANKPLVVTYTGLIQTCIDNGGMENAKYIFNHMCNYCSPNTVTCNIMLKSY 730
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
++HG+ E+A L ++ + I + D + D +TFNT L+ACAA KRW+D E +
Sbjct: 731 IQHGMLEDAKDLLYDIL--NCRIRSKADSSQVATADKFTFNTFLEACAAAKRWNDFEYAF 788
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLEN 360
++ML +G HF+ +RHLRM+LDA R GK +LL+ W +L R+ P +I ERFC +L
Sbjct: 789 RQMLLNGYHFDERRHLRMVLDAYRHGKDQLLDDLWHYLCHHSRVPPTPVIMERFCLKLMQ 848
Query: 361 KDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSP 420
D +AISC+ S S +WL N+ ++ + +L HE ++ +++R+ S
Sbjct: 849 GDTLAAISCVSSFKEGKICNISSTSWLNLLNRNTARLKEEHVTKLAHELNNLVSSRSSSN 908
Query: 421 YPVL-QNLISSCKDFL 435
L Q ++SSC FL
Sbjct: 909 SITLYQKILSSCTAFL 924
>gi|413950899|gb|AFW83548.1| hypothetical protein ZEAMMB73_840071 [Zea mays]
Length = 956
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 258/447 (57%), Positives = 323/447 (72%), Gaps = 8/447 (1%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+SSYPD AY IAVTLGQAG IKELFDVID M S P+KKFK L+ WDPRLEPD++VY
Sbjct: 508 LSSYPDMAAYHCIAVTLGQAGLIKELFDVIDCMCSPPRKKFKLSPLQNWDPRLEPDLIVY 567
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
NAVLNACV++KQWEGAFWVLQQLK++ P+ +TYGLVMEVML CGKYNLVYEFF KV K
Sbjct: 568 NAVLNACVQQKQWEGAFWVLQQLKEKNICPTNSTYGLVMEVMLVCGKYNLVYEFFNKVDK 627
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
S IP AL YKVLVN LWREGK DEAV AV+DME RGIVGSA+LYYDLARCLCS G+C+EA
Sbjct: 628 SSIPGALNYKVLVNALWREGKIDEAVMAVKDMESRGIVGSASLYYDLARCLCSGGRCKEA 687
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240
L+Q++KICKVANKPLVV+YTGLIQ C+D+G +++A YIFN M N+CSPN VTCNIM+K+Y
Sbjct: 688 LLQVEKICKVANKPLVVTYTGLIQTCIDNGGMEDAKYIFNHMCNYCSPNSVTCNIMMKSY 747
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
++HG+ E+A L ++ + I + D + D +TFNT ++ACAA KRW+D E +
Sbjct: 748 IKHGMLEDAKDLLHDIL--NCRIRSKADSNQVATADKFTFNTFMEACAAAKRWNDFEYAF 805
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLEN 360
+ ML +G HF+ +RHLRM+LDA R GK +LL+ W +L R R+ P +I ERFC +L
Sbjct: 806 REMLLNGYHFDERRHLRMVLDAFRHGKEQLLDDLWHYLCRHSRVPPSPVIMERFCLKLMQ 865
Query: 361 KDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSP 420
D +AISC+ S S +WL N+ ++ + +L HE +S ++ R+ S
Sbjct: 866 GDTLAAISCVSSFHEGKICNVSSMSWLNLLSRNADRLKEEHVTKLAHELNSLISLRSSSD 925
Query: 421 YPVL---QNLISSCKDFLRTQSPAPVV 444
L Q +ISSC FL S A VV
Sbjct: 926 SISLSLYQKIISSCTAFL---SGATVV 949
>gi|255568609|ref|XP_002525278.1| GTP binding protein, putative [Ricinus communis]
gi|223535436|gb|EEF37106.1| GTP binding protein, putative [Ricinus communis]
Length = 1010
Score = 344 bits (882), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 180/426 (42%), Positives = 260/426 (61%), Gaps = 14/426 (3%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD AY IAVTLGQAG++KEL +++ M+ P K+ +RWDP LEPDIV+YNAV
Sbjct: 418 YPDMAAYHVIAVTLGQAGNLKELLKIVECMKQQPSKRINKMCYKRWDPVLEPDIVIYNAV 477
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-Y 122
LNACV +QW+G WV +QL++ G KP+ TYGL MEVML GKY+LV+E FRK+ +S
Sbjct: 478 LNACVPTQQWKGVAWVFEQLRKSGLKPNGATYGLAMEVMLNSGKYDLVHELFRKMNRSGE 537
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P AL YKVLV W EGK +EA+ AV DME RG+VG+A+LYY+LA CLC G ++A++
Sbjct: 538 APKALTYKVLVRAFWEEGKVNEAMEAVRDMENRGVVGTASLYYELACCLCYYGMWQDAML 597
Query: 183 QMDKICKVA-NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241
++ K+ + +KPL V++TGLI + LD G++ + IF MK +C PN+ T NIM+K Y
Sbjct: 598 EVKKMKNLRHSKPLEVTFTGLIMSSLDGGHVSDCISIFEYMKAYCVPNIGTINIMLKVYG 657
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ LF +A +LF E+ +N ++PD +T+++ML+A A+ +W+ ELVYK
Sbjct: 658 RNDLFSKAKELFGEIKGTNND-------GTYLVPDEFTYSSMLEASASALQWEYFELVYK 710
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENK 361
M G + K+H ++++ASR GK LLE ++ A I L E +
Sbjct: 711 EMTFCGYQLDQKKHASLLVEASRVGKYHLLEHAFDAALEAGEIPHHLLFTEMVFQATAQQ 770
Query: 362 DYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPY 421
+Y A+ LV+ + S W+ F++N QD L +LL +L + + +
Sbjct: 771 NYERAV-VLVNTLALAPFKISEKQWIDLFQKNGDKITQDGLEKLL----DALRSSDVASE 825
Query: 422 PVLQNL 427
P + NL
Sbjct: 826 PTVANL 831
>gi|357476491|ref|XP_003608531.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509586|gb|AES90728.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 877
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 172/407 (42%), Positives = 254/407 (62%), Gaps = 14/407 (3%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD AY SIAVTLGQAG +KEL ++++ MR P+ K + WDP LEPD+V+YNAV
Sbjct: 294 YPDMAAYHSIAVTLGQAGLLKELLNIVECMRQKPET-LKYMYRKNWDPTLEPDVVIYNAV 352
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-Y 122
LNACV KQW+G WV QQ+++ KP+ TYGL MEVML G Y+LV+E F K+Q++
Sbjct: 353 LNACVPSKQWKGVSWVFQQMRKSSLKPNGATYGLAMEVMLQSGNYDLVHELFEKMQRNGE 412
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P AL YKV+V T W+EGK DEAV AV DMERRG++G+A++YY+LA CLC+ G+ ++A +
Sbjct: 413 VPEALTYKVMVRTFWKEGKVDEAVKAVRDMERRGVMGTASVYYELACCLCNCGRWQDATL 472
Query: 183 QMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241
+++KI ++ + KPL V++TG+I++ +D G+I + IF M++ C+PN+ T N M+K Y
Sbjct: 473 EVEKIKRLPHAKPLEVTFTGMIRSSMDGGHIDDCICIFEYMQDHCAPNVGTVNTMLKVYS 532
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
++ +F A LF+E+ + + PD YT+N ML+A + +W+ E VYK
Sbjct: 533 QNDMFSTAKVLFEEVKVAKSDLR----------PDAYTYNLMLEASSRGHQWEYFEHVYK 582
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENK 361
M+ G H + +HL +++ ASRAGK+ LLE ++ + A I E +
Sbjct: 583 EMILSGYHLDQNKHLPLLVKASRAGKLHLLEHAFDMVLEAGEIPHHLFFFELVIQAIAQH 642
Query: 362 DYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHE 408
+Y AI L+S + W + FKEN + L +LL +
Sbjct: 643 NYERAI-ILLSTMAHAPYRVTEKQWTELFKENEDRINHENLKRLLDD 688
>gi|356565493|ref|XP_003550974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g67570,
chloroplastic-like [Glycine max]
Length = 865
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 170/406 (41%), Positives = 253/406 (62%), Gaps = 7/406 (1%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD AY S+AVTLGQAG +KEL ++++ MR PK + WDP LEPD+V+YNAV
Sbjct: 274 YPDIAAYHSVAVTLGQAGLLKELLNIVECMRQKPKAFMHR---KNWDPVLEPDVVIYNAV 330
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-Y 122
LNACV KQW+G WV +QL++ G KP+ TYGL MEVML G Y+LV+EFF K+++S
Sbjct: 331 LNACVPSKQWKGVSWVFKQLRKSGLKPNGATYGLAMEVMLESGNYDLVHEFFGKMKRSGE 390
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P AL YKVLV T W+EGK +EAV AV DMERRG++G+A++YY+LA CLC+ G+ ++A++
Sbjct: 391 VPKALTYKVLVKTFWKEGKVNEAVKAVRDMERRGVIGTASVYYELACCLCNNGRWQDAIL 450
Query: 183 QMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241
++D I + + KPL V++TG+I++ +D G+I + IF MK C PN+ N M+K Y
Sbjct: 451 EVDNIRSLPHAKPLEVTFTGMIKSSMDGGHINDCICIFEYMKEHCVPNIGAINTMLKVYG 510
Query: 242 EHGLFEEAMKLFQEM-AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
++ +F +A LF+E+ S V+PD+Y++N+ML+A A ++W+ E VY
Sbjct: 511 QNDMFSKAKVLFEEVKVAKSEFYATPEGGYSSVVPDVYSYNSMLEASATAQQWEYFEHVY 570
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLEN 360
+ M+ G + +HL +++ ASRAGK+ LLE ++ + A I E +
Sbjct: 571 REMIVSGYQLDQDKHLSLLVKASRAGKLHLLEHAFDMILEAGEIPHHLFFFELVIQAIAQ 630
Query: 361 KDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLL 406
+Y A+ L++ + W FKE+ + L +LL
Sbjct: 631 HNYERAV-ILINTMAYAPFRVTEKQWTNLFKESEDRISLENLERLL 675
>gi|334188692|ref|NP_201558.3| delayed greening 1 protein [Arabidopsis thaliana]
gi|223635752|sp|Q9FJW6.2|PP451_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g67570, chloroplastic; AltName: Full=Protein DELAYED
GREENING 1; AltName: Full=Protein EMBRYO DEFECTIVE 1408;
Flags: Precursor
gi|332010978|gb|AED98361.1| delayed greening 1 protein [Arabidopsis thaliana]
Length = 798
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 175/431 (40%), Positives = 262/431 (60%), Gaps = 16/431 (3%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD AY IAVTLGQAG +KEL VI+ MR P K K + WDP LEPD+VVYNA+
Sbjct: 288 YPDMAAYHCIAVTLGQAGLLKELLKVIERMRQKPTKLTKNLRQKNWDPVLEPDLVVYNAI 347
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-Y 122
LNACV QW+ WV +L++ G +P+ TYGL MEVML GK++ V++FFRK++ S
Sbjct: 348 LNACVPTLQWKAVSWVFVELRKNGLRPNGATYGLAMEVMLESGKFDRVHDFFRKMKSSGE 407
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P A+ YKVLV LWREGK +EAV AV DME++G++G+ ++YY+LA CLC+ G+ +A++
Sbjct: 408 APKAITYKVLVRALWREGKIEEAVEAVRDMEQKGVIGTGSVYYELACCLCNNGRWCDAML 467
Query: 183 QMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241
++ ++ ++ N +PL +++TGLI A L+ G++ + IF MK+ C PN+ T N+M+K Y
Sbjct: 468 EVGRMKRLENCRPLEITFTGLIAASLNGGHVDDCMAIFQYMKDKCDPNIGTANMMLKVYG 527
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ +F EA +LF+E+ ++R K+ ++P+ YT++ ML+A A +W+ E VY+
Sbjct: 528 RNDMFSEAKELFEEI------VSR---KETHLVPNEYTYSFMLEASARSLQWEYFEHVYQ 578
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENK 361
M+ G + +H M+++ASRAGK LLE ++ + I P E C+
Sbjct: 579 TMVLSGYQMDQTKHASMLIEASRAGKWSLLEHAFDAVLEDGEIPHPLFFTELLCHATAKG 638
Query: 362 DYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPY 421
D+ AI+ L++ S + S W F+E+ QD LH+ S L +
Sbjct: 639 DFQRAIT-LINTVALASFQISEEEWTDLFEEHQDWLTQDN----LHKLSDHLIECDYVSE 693
Query: 422 PVLQNLISSCK 432
P + NL S K
Sbjct: 694 PTVSNLSKSLK 704
>gi|110738632|dbj|BAF01241.1| hypothetical protein [Arabidopsis thaliana]
Length = 508
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 172/426 (40%), Positives = 259/426 (60%), Gaps = 16/426 (3%)
Query: 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACV 68
AY IAVTLGQAG +KEL VI+ MR P K K + WDP LEPD+VVYNA+LNACV
Sbjct: 3 AYHCIAVTLGQAGLLKELLKVIERMRQKPTKLTKNLRQKNWDPVLEPDLVVYNAILNACV 62
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YIPNAL 127
QW+ WV +L++ G +P+ TYGL MEVML GK++ V++FFRK++ S P A+
Sbjct: 63 PTLQWKAVSWVFVELRKNGLRPNGATYGLAMEVMLESGKFDRVHDFFRKMKSSGEAPKAI 122
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
YKVLV LWREGK +EAV AV DME++G++G+ ++YY+LA CLC+ G+ +A++++ ++
Sbjct: 123 TYKVLVRALWREGKIEEAVEAVRDMEQKGVIGTGSVYYELACCLCNNGRWCDAMLEVGRM 182
Query: 188 CKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLF 246
++ N +PL +++TGLI A L+ G++ + IF MK+ C PN+ T N+M+K Y + +F
Sbjct: 183 KRLENCRPLEITFTGLIAASLNGGHVDDCMAIFQYMKDKCDPNIGTANMMLKVYGRNDMF 242
Query: 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306
EA +LF+E+ ++R K+ ++P+ YT++ ML+A A +W+ E VY+ M+
Sbjct: 243 SEAKELFEEI------VSR---KETHLVPNEYTYSFMLEASARSLQWEYFEHVYQTMVLS 293
Query: 307 GLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSA 366
G + +H M+++ASRAGK LLE ++ + I P E C+ D+ A
Sbjct: 294 GYQMDQTKHASMLIEASRAGKWSLLEHAFDAVLEDGEIPHPLFFTELLCHATAKGDFQRA 353
Query: 367 ISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQN 426
I+ L++ S + S W F+E+ QD LH+ S L + P + N
Sbjct: 354 IT-LINTVALASFQISEEEWTDLFEEHQDWLTQDN----LHKLSDHLIECDYVSEPTVSN 408
Query: 427 LISSCK 432
L S K
Sbjct: 409 LSKSLK 414
>gi|449448456|ref|XP_004141982.1| PREDICTED: pentatricopeptide repeat-containing protein At5g67570,
chloroplastic-like [Cucumis sativus]
gi|449499902|ref|XP_004160949.1| PREDICTED: pentatricopeptide repeat-containing protein At5g67570,
chloroplastic-like [Cucumis sativus]
Length = 860
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 161/406 (39%), Positives = 249/406 (61%), Gaps = 4/406 (0%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD AY SIAVTLGQAG +K+L VI+ MR P KK + + WDP +EPD+V+YNA+
Sbjct: 290 YPDMAAYHSIAVTLGQAGLLKQLLKVIEFMRQQPSKKVRNKCRKSWDPAVEPDLVIYNAI 349
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-Y 122
LNAC+ +W+G +WV QL++ G +P+ TYGL MEVML GKY ++ F K++K+
Sbjct: 350 LNACIPTLEWKGVYWVFTQLRKSGLRPNGATYGLSMEVMLKSGKYEQLHNLFTKMKKNGQ 409
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
A Y+VLV W EG + A+ AV DME+RG+VGSA++YY+LA CLC GK ++AL+
Sbjct: 410 TLKANTYRVLVKAFWEEGNVNGAIEAVRDMEQRGVVGSASVYYELACCLCYNGKWQDALV 469
Query: 183 QMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241
+++K+ +++ KPLVV++TG+I + + G+I + IF MK C+PN+ T N M+K Y
Sbjct: 470 EVEKMKTLSHMKPLVVTFTGMISSSFNGGHIDDCISIFEYMKQICAPNIGTINTMLKVYG 529
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ ++ +A LF+E+ ++ + + LV PD YT+ +ML+A A+ +W+ E VY+
Sbjct: 530 RNDMYSKAKDLFEEIKRKADSSSHDSAVPSLV-PDEYTYASMLEAAASSLQWEYFESVYR 588
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENK 361
M G + +H ++++AS+AGK LL+ ++ + A +I P L E
Sbjct: 589 EMALSGYQLDQSKHALLLVEASKAGKWYLLDHAFDTILEAGQIPHPLLFTEMILQLTTQD 648
Query: 362 DYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLH 407
+Y A++ LV + S W + F+ N+ ++ L QLLH
Sbjct: 649 NYEQAVT-LVRTMGYAPFQVSERQWTELFEGNTDRIRRNNLKQLLH 693
>gi|326511679|dbj|BAJ91984.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326528463|dbj|BAJ93413.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 844
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 168/442 (38%), Positives = 253/442 (57%), Gaps = 8/442 (1%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD AY SIAVTLG+AG + EL +ID MR P K+ + WDP LEPD++VYN+V
Sbjct: 287 YPDMAAYHSIAVTLGRAGLLNELIKIIDYMRQKPSKRVMMMRRKDWDPLLEPDVLVYNSV 346
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
LNACV +QW+G FWV Q+++ G P+ T+GL MEVML KY V +FF K+Q+ +
Sbjct: 347 LNACVLSQQWKGVFWVFQKMRFGGLTPTGATFGLAMEVMLKSKKYEFVQKFFEKMQRKGV 406
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P A+ YKVLV W +GK +EAV AV+DME+RG+VG+A +YY+LA CLC+ G+ ++A++
Sbjct: 407 PPRAITYKVLVRAFWEQGKVNEAVEAVKDMEQRGVVGAATVYYELACCLCNKGRWKDAML 466
Query: 183 QMDKICKVA-NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241
Q++K+ + KPL ++TG+I A D G I IF MK++C+PN+ T N+M+K Y
Sbjct: 467 QVEKMEQFRLTKPLEFAFTGMILASFDGGYISECISIFESMKDYCTPNIGTINVMLKVYG 526
Query: 242 EHGLFEEAMKLFQEMAEDSN-HINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+F +A LF+ S HI K D+YT++++L+A A+ ++W+ E VY
Sbjct: 527 RCDMFGKAKDLFETTTCSSQPHIRGHSSLK----VDVYTYSSILEASASAQQWEYFENVY 582
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLEN 360
++M H + ++ +++ ASRAGK L+E + + I L E C +
Sbjct: 583 RKMTLSQHHLDQSKYSWLLIKASRAGKPYLVEHALDSILERGEIPDVELFTENICQTIAE 642
Query: 361 KDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSP 420
DYG + L++ + S + W +NS F L L+ S+S +
Sbjct: 643 SDYGRTLH-LMNTMSAASVNMNEQQWSDLLLQNSHRFRVHGLKDLITHLSTSDAIKTDPG 701
Query: 421 YPVLQNLISSCKDFLRTQSPAP 442
+ ++ L S C L + P
Sbjct: 702 HSFVRALQSQCATMLAKDAEEP 723
>gi|115463141|ref|NP_001055170.1| Os05g0315100 [Oryza sativa Japonica Group]
gi|113578721|dbj|BAF17084.1| Os05g0315100 [Oryza sativa Japonica Group]
gi|222631083|gb|EEE63215.1| hypothetical protein OsJ_18025 [Oryza sativa Japonica Group]
Length = 874
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/433 (38%), Positives = 252/433 (58%), Gaps = 14/433 (3%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD AY SIAVTLG+AG + EL +I+ MR P K+ + WDP LEPD+++YN+V
Sbjct: 297 YPDMAAYHSIAVTLGRAGLLNELIKIIEYMRQKPSKRVMKMRRKDWDPSLEPDVLIYNSV 356
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
LNACV +QW+G FWV QQ+++ P+ T+GL MEVML KY+ V +FF+K+QKS +
Sbjct: 357 LNACVLSQQWKGVFWVFQQMRRNSLIPTGATFGLAMEVMLKAKKYDFVQKFFQKMQKSGV 416
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P A+ YKVLV W +GK +EAV AV+DME+RGIVG+A++YY+LA CLC+ G+ +AL
Sbjct: 417 PPRAITYKVLVRAYWEQGKVNEAVEAVKDMEQRGIVGAASVYYELACCLCNKGRWRDALS 476
Query: 183 QMDKICKVA-NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241
Q++K+ ++ KPL ++TG+I A D G I IF M+ C+PN+ T N+M+K Y
Sbjct: 477 QVEKLKQLPLTKPLEFTFTGMILASFDGGYISECISIFESMEGHCAPNIGTINVMIKVYG 536
Query: 242 EHGLFEEAMKLFQEMAED---SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+F +A LF+ + + SNH + + D YT+++ML+A A+ ++W+ E
Sbjct: 537 RCDMFVKARDLFETIKVNLPSSNHSSHK--------ADAYTYSSMLEAAASAQQWEYFEN 588
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRL 358
VY+ M H + ++ M++ AS+AGK LLE + + L E C +
Sbjct: 589 VYREMTLSQYHLDQSKYSWMLIKASKAGKSYLLEHALDSILERGETPNVQLFSEMICQTI 648
Query: 359 ENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNG 418
++Y + L++ S + S W K ++N F + L LL S+S ++
Sbjct: 649 AQRNYAKTLH-LINIMAEASTDVSELQWSKLLEQNMHRFSVNALKDLLKYLSTSDIIKSD 707
Query: 419 SPYPVLQNLISSC 431
+ L S C
Sbjct: 708 PELCFVSALQSQC 720
>gi|125551793|gb|EAY97502.1| hypothetical protein OsI_19428 [Oryza sativa Indica Group]
Length = 874
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/433 (38%), Positives = 252/433 (58%), Gaps = 14/433 (3%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD AY SIAVTLG+AG + EL +I+ MR P K+ + WDP LEPD+++YN+V
Sbjct: 297 YPDMAAYHSIAVTLGRAGLLNELIKIIEYMRQKPSKRVMKMRRKDWDPSLEPDVLIYNSV 356
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
LNACV +QW+G FWV QQ+++ P+ T+GL MEVML KY+ V +FF+K+QKS +
Sbjct: 357 LNACVLSQQWKGVFWVFQQMRRNSLIPTGATFGLAMEVMLKAKKYDFVQKFFQKMQKSGV 416
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P A+ YKVLV W +GK +EAV AV+DME+RGIVG+A++YY+LA CLC+ G+ +AL
Sbjct: 417 PPRAITYKVLVRAYWEQGKVNEAVEAVKDMEQRGIVGAASVYYELACCLCNKGRWRDALS 476
Query: 183 QMDKICKVA-NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241
Q++K+ ++ KPL ++TG+I A D G I IF M+ C+PN+ T N+M+K Y
Sbjct: 477 QVEKLKQLPLTKPLEFTFTGMILASFDGGYISECISIFESMEGHCAPNIGTINVMIKVYG 536
Query: 242 EHGLFEEAMKLFQEMAED---SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+F +A LF+ + + SNH + + D YT+++ML+A A+ ++W+ E
Sbjct: 537 RCDMFVKARDLFETIKVNLPSSNHSSHK--------ADAYTYSSMLEAAASAQQWEYFEN 588
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRL 358
VY+ M H + ++ M++ AS+AGK LLE + + L E C +
Sbjct: 589 VYREMTLSQYHLDQSKYSWMLIKASKAGKSYLLEHALDSILERGETPNVQLFSEMICQTI 648
Query: 359 ENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNG 418
++Y + L++ S + S W K ++N F + L LL S+S ++
Sbjct: 649 AQRNYAKTLH-LINIMAEASTDVSELQWSKLLEQNMHRFSVNALKDLLKYLSTSDIIKSD 707
Query: 419 SPYPVLQNLISSC 431
+ L S C
Sbjct: 708 PELCFVSALQSQC 720
>gi|357121315|ref|XP_003562366.1| PREDICTED: pentatricopeptide repeat-containing protein At5g67570,
chloroplastic-like [Brachypodium distachyon]
Length = 858
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 165/434 (38%), Positives = 249/434 (57%), Gaps = 3/434 (0%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD AY SIAVTLG+AG + EL +ID MR P K+ + WDP LEPD+++YN+V
Sbjct: 282 YPDMAAYHSIAVTLGRAGLLNELIKIIDYMRQKPSKRVMRMRRKDWDPLLEPDLIIYNSV 341
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
LNACV +QW+G FWV ++++ G P+ T+GL MEVML KY+ V +FF K+Q+ +
Sbjct: 342 LNACVLSQQWKGVFWVFKKMRFGGLTPTGATFGLAMEVMLKAKKYDFVQKFFEKMQRKGV 401
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P A+ YKVLV W +GK +EAV AVEDME+RGIVG+A++YY+LA CLC+ GK +EA++
Sbjct: 402 PPRAITYKVLVRAFWEQGKVNEAVEAVEDMEQRGIVGAASVYYELACCLCNKGKWKEAML 461
Query: 183 QMDKICKVA-NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241
Q++K+ ++ KPL +TG+I A D G + IF MK++C+PN+ T N+M+K Y
Sbjct: 462 QVEKLEQLRLTKPLEYVFTGMILASFDGGYMSECISIFESMKDYCAPNIGTINVMLKVYG 521
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+F +A LF+ + + D YT+++ML+A A ++W+ E Y+
Sbjct: 522 RSDMFVKAKDLFETTTCSFSSSQPYICDHSTLQADAYTYSSMLEASAHAQQWEYFENAYR 581
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENK 361
RM+ H + ++ +++ ASRAGK LLE + L E C + +
Sbjct: 582 RMILSHHHLDQSKYSWLLIKASRAGKPYLLEHALNSILDRGETPDVQLFTENVCQTIAHS 641
Query: 362 DYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPY 421
DYG + CL++ + S + + W ++N F + L LL S+ T
Sbjct: 642 DYGRTL-CLLNFMSAASVDVNELQWSDLLQQNMFRFSVNALKDLLMHLSTGDTIERDPAL 700
Query: 422 PVLQNLISSCKDFL 435
++ L S F+
Sbjct: 701 SFVRALQSQYATFV 714
>gi|385269624|gb|AFI56571.1| PPR8522 [Zea mays]
gi|414874088|tpg|DAA52645.1| TPA: hypothetical protein ZEAMMB73_282844 [Zea mays]
Length = 832
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 172/443 (38%), Positives = 257/443 (58%), Gaps = 15/443 (3%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD AY IAVTLG+AG +KEL +I+ MR P K + WDP LEPD++VYN+V
Sbjct: 282 YPDMPAYHCIAVTLGRAGLLKELIKIIEYMRQKPSKLVMKMRRKDWDPSLEPDVLVYNSV 341
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
LNACV +QW+G FWV QQ++ G P+ TYGL MEVML KY+ V +F+ K+QK+ +
Sbjct: 342 LNACVLSQQWKGVFWVFQQMRIGGLPPTGATYGLAMEVMLKAKKYDFVQKFYEKMQKNGV 401
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P A+ YKVLV + W + K +EAV AV DME+RG+VG+A++YY+LA CLC+ G+ +A++
Sbjct: 402 PPRAITYKVLVRSFWEQDKINEAVEAVNDMEQRGVVGAASVYYELACCLCNNGRWRDAML 461
Query: 183 QMDKICKVA-NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241
Q++K+ ++ KPL ++TG+I A + G I + IF MK+ C PN+ T N+M+K Y
Sbjct: 462 QVEKLKQLPLTKPLEYAFTGMILASFNGGYIYDCISIFELMKDHCMPNIGTVNVMLKVYG 521
Query: 242 EHGLFEEAMKLFQEMA----EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+F +A LF+ +I+ K D YT+N+ML+A A+ ++W+ E
Sbjct: 522 HCDMFGKAKDLFETTKACFLNSQTYIHEHSSFKA----DTYTYNSMLEASASAQQWEYFE 577
Query: 298 LVYKRML--HHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFC 355
VY+ M HH L + ++ +++ A RAGK LLE + + I LI E C
Sbjct: 578 YVYREMALSHHCL--DQSKYSWLLIKACRAGKPYLLEHALDSILERGEIPDVQLITESIC 635
Query: 356 NRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTT 415
+ ++DYG + L++ S + W ++N F D L L+ S++ TT
Sbjct: 636 QSIAHRDYGRTLQ-LLNIMTQASIKIKEVEWDYLLQQNMHQFSIDALEGLIKYLSTNGTT 694
Query: 416 RNGSPYPVLQNLISSCKDFLRTQ 438
+++ L S C+D TQ
Sbjct: 695 NADPAVDLVRALQSQCRDDTSTQ 717
>gi|224097262|ref|XP_002310894.1| predicted protein [Populus trichocarpa]
gi|222853797|gb|EEE91344.1| predicted protein [Populus trichocarpa]
Length = 504
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 156/328 (47%), Positives = 216/328 (65%), Gaps = 11/328 (3%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD AY SIAVTLGQ G +KEL VI+ MR P K+ + WDP LEPD+V+YNA+
Sbjct: 185 YPDMAAYHSIAVTLGQTGLLKELVKVIECMRQKPSKRINKMLNKNWDPVLEPDLVIYNAI 244
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
LNACV +QW+G WV QQL++ G KP+ TYGL MEVML GKY V+E+FRK++KS
Sbjct: 245 LNACVPSQQWKGVSWVFQQLRRSGLKPNGATYGLAMEVMLLSGKYKSVHEYFRKMKKSGE 304
Query: 124 P-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
AL YKVLV W EG+ +EAV AV DME+RG+VG+A++YY+LA CLC G+ ++A++
Sbjct: 305 SLKALTYKVLVRAFWEEGRVNEAVEAVRDMEQRGVVGAASVYYELACCLCYNGRWQDAML 364
Query: 183 QMDKICKVA-NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241
+++K+ ++ KPL VS TG+I + +D G+I N IF MK C PN+ T N M+K Y
Sbjct: 365 EVEKMKRLRYKKPLEVSLTGMIASSMDGGHIDNCISIFEHMKAHCVPNIGTINTMLKVYS 424
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKG-LVIPDIYTFNTMLDACAAEKRWDDLELVY 300
LF EA +LF+++ + D G +IPD YT+++ML+ A +W+ E VY
Sbjct: 425 RSDLFSEAKELFEDI--------KGVDHSGTTIIPDGYTYSSMLEVSARALQWEYFEYVY 476
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKV 328
K M G + +H ++++ASR+GKV
Sbjct: 477 KEMSFSGYQLDQIKHAPLLVEASRSGKV 504
>gi|297797625|ref|XP_002866697.1| EMB1408 [Arabidopsis lyrata subsp. lyrata]
gi|297312532|gb|EFH42956.1| EMB1408 [Arabidopsis lyrata subsp. lyrata]
Length = 621
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 152/333 (45%), Positives = 223/333 (66%), Gaps = 11/333 (3%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD AY SIAVTLGQAG +KEL VI+ MR P K K WD LEPD+VVYNA+
Sbjct: 288 YPDMAAYHSIAVTLGQAGLLKELLKVIEHMRQKPTKLMKNLRQRNWDHVLEPDLVVYNAI 347
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-Y 122
LNACV QW+ WV +L++ G +P+ TYGL MEVML GKY+ V++FFRK++ S
Sbjct: 348 LNACVPTLQWKAVSWVFVELRKNGLRPNGATYGLAMEVMLESGKYDRVHDFFRKMKSSGE 407
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P A+ YKVLV LWREGK +EAV AV DME++G++G+ ++YY+LA CLC+ G+ +A++
Sbjct: 408 APKAITYKVLVRALWREGKIEEAVEAVRDMEQKGVIGTGSVYYELACCLCNNGRWRDAML 467
Query: 183 QMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241
++ ++ ++ N +PL +++TGLI A L+ G++ + IF MK+ C PN+ T N+M++ Y
Sbjct: 468 EVGRMKRLENCRPLEITFTGLIAASLNGGHVDDCMAIFQYMKDKCDPNIGTANMMLRVYG 527
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ +F EA +LF+E+ ++R K+ ++P+ YT+N ML+A A +W+ E VY+
Sbjct: 528 RNDMFSEAKELFEEI------VSR---KETHLVPNEYTYNFMLEASARSLQWEYFEHVYQ 578
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEIT 334
M+ G + +H M+++ASRAGKV L I
Sbjct: 579 LMILSGYQMDQAKHASMLIEASRAGKVTNLLIV 611
>gi|242040507|ref|XP_002467648.1| hypothetical protein SORBIDRAFT_01g031600 [Sorghum bicolor]
gi|241921502|gb|EER94646.1| hypothetical protein SORBIDRAFT_01g031600 [Sorghum bicolor]
Length = 872
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 164/432 (37%), Positives = 254/432 (58%), Gaps = 7/432 (1%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD AY SIAVTLG+AG +KEL +I+ MR P K+ + WDP LEPD++VYN+V
Sbjct: 293 YPDMPAYHSIAVTLGRAGLLKELIKIIEYMRQKPSKRVMNMRRKGWDPSLEPDVLVYNSV 352
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
LNACV +QW+G FWV QQ++ G P+ T+GL MEVML KY+ V +F+ K+QK+ +
Sbjct: 353 LNACVLSQQWKGVFWVFQQMRISGLPPTGATFGLAMEVMLKAKKYDFVQKFYEKMQKNGV 412
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P A+ YKVLV W +GK +EAV AV DME+RG+VG+A++YY+LA CLC+ + +A++
Sbjct: 413 PPRAITYKVLVRAFWEQGKINEAVEAVNDMEQRGVVGAASVYYELACCLCNNRRWRDAML 472
Query: 183 QMDKICKVA-NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241
Q++K+ ++ KPL ++TG+I A + G I + IF MK+ C+PN+ T N+M+K Y
Sbjct: 473 QVEKLKQLPLTKPLEYTFTGMILASFNGGYIYDCISIFESMKDHCTPNIGTVNVMLKVYG 532
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+F +A LF+ ++ + + D YT+++ML+A A+ ++W+ E VY+
Sbjct: 533 RCDMFGKAKDLFETTKACFSNSQTYIHEHSSLKADTYTYSSMLEASASAQQWEYFEYVYR 592
Query: 302 RML--HHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLE 359
M+ HH L + ++ +++ A RAGK LLE + + I LI E C +
Sbjct: 593 EMVLSHHCL--DQSKYSWLLIKACRAGKSNLLEHALDSILERGEIPDVQLITELICQSIA 650
Query: 360 NKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGS 419
++DY + L++ S + W+ ++N F D L + S+S T
Sbjct: 651 HRDYRRTLQ-LLNIMTEASIKMKEVEWVYLLQKNVYQFNIDALEGFIKYLSTSGTINADP 709
Query: 420 PYPVLQNLISSC 431
+++ L S C
Sbjct: 710 ALGLVRALESQC 721
>gi|9757878|dbj|BAB08465.1| unnamed protein product [Arabidopsis thaliana]
Length = 505
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 149/327 (45%), Positives = 222/327 (67%), Gaps = 11/327 (3%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD AY IAVTLGQAG +KEL VI+ MR P K K + WDP LEPD+VVYNA+
Sbjct: 182 YPDMAAYHCIAVTLGQAGLLKELLKVIERMRQKPTKLTKNLRQKNWDPVLEPDLVVYNAI 241
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-Y 122
LNACV QW+ WV +L++ G +P+ TYGL MEVML GK++ V++FFRK++ S
Sbjct: 242 LNACVPTLQWKAVSWVFVELRKNGLRPNGATYGLAMEVMLESGKFDRVHDFFRKMKSSGE 301
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P A+ YKVLV LWREGK +EAV AV DME++G++G+ ++YY+LA CLC+ G+ +A++
Sbjct: 302 APKAITYKVLVRALWREGKIEEAVEAVRDMEQKGVIGTGSVYYELACCLCNNGRWCDAML 361
Query: 183 QMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241
++ ++ ++ N +PL +++TGLI A L+ G++ + IF MK+ C PN+ T N+M+K Y
Sbjct: 362 EVGRMKRLENCRPLEITFTGLIAASLNGGHVDDCMAIFQYMKDKCDPNIGTANMMLKVYG 421
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ +F EA +LF+E+ ++R K+ ++P+ YT++ ML+A A +W+ E VY+
Sbjct: 422 RNDMFSEAKELFEEI------VSR---KETHLVPNEYTYSFMLEASARSLQWEYFEHVYQ 472
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKV 328
M+ G + +H M+++ASRAGKV
Sbjct: 473 TMVLSGYQMDQTKHASMLIEASRAGKV 499
>gi|168058150|ref|XP_001781073.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667470|gb|EDQ54099.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 413
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 147/334 (44%), Positives = 213/334 (63%), Gaps = 8/334 (2%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLER--WDPRLEPDIVV 59
S+YPD AY SIAVTLGQAGH+ +L D+I+S+R P KK G+ + W+ RLEPDIVV
Sbjct: 81 STYPDMAAYHSIAVTLGQAGHLTQLLDLIESLREGPVKKTVKGSPRQLNWNGRLEPDIVV 140
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
YNAV+NACV +QWEG WV +Q++ KP++ TYGL EVM+ +Y+ V+ ++ ++
Sbjct: 141 YNAVINACVPHRQWEGTEWVFRQIQSSRIKPNSATYGLATEVMVKSRQYDKVWRYYELME 200
Query: 120 KS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ ++PNA +K LV L G+ D+A+ V+DMERRGI+ A +YY LA LC+AG+
Sbjct: 201 RGDFLPNASTFKALVEALGTAGEIDQAIEVVDDMERRGILECAGVYYALASALCTAGRLS 260
Query: 179 EALMQMDKICKVANKPL-VVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIM 236
EAL+Q++K+ K+ K L VV+YTGLI C SG Q+A ++F+ M+ F C+PNL T NIM
Sbjct: 261 EALVQVEKLAKLPTKKLDVVTYTGLIHTCEKSGRWQDAIFLFDHMEQFVCAPNLGTYNIM 320
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGL--VIPDIYTFNTMLDACAAEKRWD 294
+ Y H LFE+A +F E+ + H ++ + L + P T+ +ML AC K WD
Sbjct: 321 ISLYGRHCLFEKAKNMF-ELVKRGAHKESKFYQANLSRLSPTEQTYESMLGACVVCKEWD 379
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
E+V + G H +RH + ++AG+V
Sbjct: 380 YFEVVLEEFHTRGFHLECRRHAWFLSPLTKAGQV 413
>gi|414874089|tpg|DAA52646.1| TPA: hypothetical protein ZEAMMB73_282844 [Zea mays]
Length = 659
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 145/335 (43%), Positives = 213/335 (63%), Gaps = 14/335 (4%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD AY IAVTLG+AG +KEL +I+ MR P K + WDP LEPD++VYN+V
Sbjct: 325 YPDMPAYHCIAVTLGRAGLLKELIKIIEYMRQKPSKLVMKMRRKDWDPSLEPDVLVYNSV 384
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
LNACV +QW+G FWV QQ++ G P+ TYGL MEVML KY+ V +F+ K+QK+ +
Sbjct: 385 LNACVLSQQWKGVFWVFQQMRIGGLPPTGATYGLAMEVMLKAKKYDFVQKFYEKMQKNGV 444
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P A+ YKVLV + W + K +EAV AV DME+RG+VG+A++YY+LA CLC+ G+ +A++
Sbjct: 445 PPRAITYKVLVRSFWEQDKINEAVEAVNDMEQRGVVGAASVYYELACCLCNNGRWRDAML 504
Query: 183 QMDKICKVA-NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241
Q++K+ ++ KPL ++TG+I A + G I + IF MK+ C PN+ T N+M+K Y
Sbjct: 505 QVEKLKQLPLTKPLEYAFTGMILASFNGGYIYDCISIFELMKDHCMPNIGTVNVMLKVYG 564
Query: 242 EHGLFEEAMKLFQEMA----EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+F +A LF+ +I+ K D YT+N+ML+A A+ ++W+ E
Sbjct: 565 HCDMFGKAKDLFETTKACFLNSQTYIHEHSSFKA----DTYTYNSMLEASASAQQWEYFE 620
Query: 298 LVYKRML--HHGLHFNAKRHLRMILDASRAGKVEL 330
VY+ M HH L + ++ +++ A RAGKV +
Sbjct: 621 YVYREMALSHHCL--DQSKYSWLLIKACRAGKVRV 653
>gi|168011414|ref|XP_001758398.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690433|gb|EDQ76800.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 423
Score = 253 bits (647), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 133/333 (39%), Positives = 199/333 (59%), Gaps = 4/333 (1%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLER--WDPRLEPDIVV 59
S+YPD AY SIAVTLG+AGH+ +L +I+S+R KK G + W LEPDIV+
Sbjct: 81 STYPDIAAYHSIAVTLGKAGHLTQLLHLIESLRQESMKKRARGIPLQLSWKGSLEPDIVI 140
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
YNAV+NAC ++WEGA W LQQ+K P + TY L +EVM+ G+Y+ ++++ ++
Sbjct: 141 YNAVINACGPHREWEGAEWALQQIKFSRITPDSITYDLAIEVMVKSGQYDKAWKYYELME 200
Query: 120 K-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ ++P+ +K LV L G+ D A+ VEDME RG+ A +YY LA LC+AG+
Sbjct: 201 REGFLPSGKTFKALVEALGTTGEVDRAMEMVEDMESRGVSECAGVYYALASALCTAGRLS 260
Query: 179 EALMQMDKICK-VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMV 237
EAL+Q+ K+ + KP V+++T LIQ C +G Q+A +FN+M+ CSPN+ T N M+
Sbjct: 261 EALVQVAKLANHPSKKPDVITFTCLIQTCEKAGRWQDAITLFNRMQYVCSPNVGTYNTMI 320
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
Y +FEEA +F+ + E +R + P +T+ +ML ACAA + WD E
Sbjct: 321 ALYGRLRMFEEARNMFEFVKEGKGIDSRSTPADSRLSPTAHTYESMLGACAACEHWDYFE 380
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+V + G + +RHL + +AG+V L
Sbjct: 381 VVLQEYRTSGFQLDRRRHLWFMSPIVKAGQVCL 413
>gi|62321553|dbj|BAD95068.1| putative protein [Arabidopsis thaliana]
Length = 416
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 123/336 (36%), Positives = 199/336 (59%), Gaps = 16/336 (4%)
Query: 99 MEVMLACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
MEVML GK++ V++FFRK++ S P A+ YKVLV LWREGK +EAV AV DME++G+
Sbjct: 1 MEVMLESGKFDRVHDFFRKMKSSGEAPKAITYKVLVRALWREGKIEEAVEAVRDMEQKGV 60
Query: 158 VGSAALYYDLARCLCSAGKCEEALMQMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAA 216
+G+ ++YY+LA CLC+ G+ +A++++ ++ ++ N +PL +++TGLI A L+ G++ +
Sbjct: 61 IGTGSVYYELACCLCNNGRWCDAMLEVGRMKRLENCRPLEITFTGLIAASLNGGHVDDCM 120
Query: 217 YIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
IF MK+ C PN+ T N+M+K Y + +F EA +LF+E+ ++R K+ ++P+
Sbjct: 121 AIFQYMKDKCDPNIGTANMMLKVYGRNDMFSEAKELFEEI------VSR---KETHLVPN 171
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWE 336
YT++ ML+A A +W+ E VY+ M+ G + +H M+++ASRAGK LLE ++
Sbjct: 172 EYTYSFMLEASARSLQWEYFEHVYQTMVLSGYQMDQTKHASMLIEASRAGKWSLLEHAFD 231
Query: 337 HLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQH 396
+ I P E C+ D+ AI+ L++ S + S W F+E+
Sbjct: 232 AVLEDGEIPHPLFFTELLCHATAKGDFQRAIT-LINTVALASFQISEEEWTDLFEEHQDW 290
Query: 397 FGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCK 432
QD LH+ S L + P + NL S K
Sbjct: 291 LTQDN----LHKLSDHLIECDYVSEPTVSNLSKSLK 322
>gi|147858132|emb|CAN83934.1| hypothetical protein VITISV_035768 [Vitis vinifera]
Length = 615
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 168/304 (55%), Gaps = 5/304 (1%)
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
VLV W EGK +EAV V DMERRG+VG A++YY+LA CLC+ G+ ++A+++++K+ K
Sbjct: 12 VLVRAFWEEGKVNEAVEVVRDMERRGVVGIASVYYELACCLCNNGRWQDAIVEVEKLKKR 71
Query: 191 A-NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEA 249
+KPL V++TG+I + +D G++ + IF MK CSPN+ T N M+K Y + +F +A
Sbjct: 72 PHSKPLEVTFTGMITSSMDGGHLDDCLSIFEHMKYHCSPNIGTINAMLKVYGRNDMFSKA 131
Query: 250 MKLFQEMAEDSNHINREYDKKGL-VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+LF+E + N D + ++PD+YT+++ML+A A+ +W+ E VYK M G
Sbjct: 132 KELFEETKRSTFASNTCMDDGSISLVPDLYTYSSMLEASASAHQWEFFEYVYKEMTLSGY 191
Query: 309 HFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAIS 368
+ +H ++ ASRAGK LLE ++ + A I P++ E C +Y A++
Sbjct: 192 QLDQSKHALLLGKASRAGKWHLLEHAFDTILEAGEIPHPSIFTEMICQATAQHNYERAVT 251
Query: 369 CLVSHPVSGSPEFSRNAWLKFFKENSQ--HFGQDTLIQLLHEASSSLTTRNGSPYPVLQN 426
L++ S W F + + + L+ LH + + Y LQ+
Sbjct: 252 -LINAMAHAPFVVSEKQWTDLFVTDDRISRVNLEKLLDSLHNCDVAEEATVSNLYKSLQS 310
Query: 427 LISS 430
L S
Sbjct: 311 LCGS 314
>gi|296086989|emb|CBI33251.3| unnamed protein product [Vitis vinifera]
Length = 462
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 131/236 (55%), Gaps = 22/236 (9%)
Query: 13 IAVTLGQAGHIKELFDVID---SMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVR 69
I LG GH K V++ + + +++K+ L + + + VLNACV
Sbjct: 201 IVEELGARGHWKHSLSVVEWAYTDKDKDNRRYKSSILTK-----VTTLSHWYQVLNACVP 255
Query: 70 RKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YIPNALA 128
+QW+G WV +QL++ KP+ TYGL MEVML GKY+ V+ FF K+++S P AL
Sbjct: 256 TQQWKGVSWVFKQLRKCSLKPNGATYGLAMEVMLQSGKYDHVHRFFEKMRRSGEAPKALT 315
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK-I 187
YKVLV W EGK +EAV V DMERRG+VG A++YY+LA CLC+ G+ ++A+++++ I
Sbjct: 316 YKVLVRAFWEEGKVNEAVEVVRDMERRGVVGIASVYYELACCLCNNGRWQDAIVEVNLFI 375
Query: 188 CKVA-----------NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVT 232
C+ +P V+ LI + + + F Q +N CS + T
Sbjct: 376 CEYGFGMAGLLGDGVFEPYVIIIAYLITFLIPYKTLVRPLF-FAQSRNLCSASATT 430
>gi|359497125|ref|XP_002271271.2| PREDICTED: uncharacterized protein LOC100243336 [Vitis vinifera]
Length = 609
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 111/177 (62%), Gaps = 9/177 (5%)
Query: 13 IAVTLGQAGHIKELFDVID---SMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVR 69
I LG GH K V++ + + +++K+ L + + + VLNACV
Sbjct: 339 IVEELGARGHWKHSLSVVEWAYTDKDKDNRRYKSSILTK-----VTTLSHWYQVLNACVP 393
Query: 70 RKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YIPNALA 128
+QW+G WV +QL++ KP+ TYGL MEVML GKY+ V+ FF K+++S P AL
Sbjct: 394 TQQWKGVSWVFKQLRKCSLKPNGATYGLAMEVMLQSGKYDHVHRFFEKMRRSGEAPKALT 453
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMD 185
YKVLV W EGK +EAV V DMERRG+VG A++YY+LA CLC+ G+ ++A+++++
Sbjct: 454 YKVLVRAFWEEGKVNEAVEVVRDMERRGVVGIASVYYELACCLCNNGRWQDAIVEVN 510
>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Cucumis sativus]
Length = 665
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 161/349 (46%), Gaps = 38/349 (10%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFK---TGTL----------- 46
MS PD V Y +I TL +G +KE +V+D R + ++ + T T+
Sbjct: 206 MSVSPDVVTYNTILRTLCDSGKLKEAMEVLD--RQMQRECYPDVITYTILIEATCKESGV 263
Query: 47 --------ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLV 98
E D +PD+V YN ++N + + + A L + G +P+ T+ ++
Sbjct: 264 GQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNII 323
Query: 99 MEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
+ M + G++ +F + ++K P+ + + +L+N L R+G A+ +E M + G
Sbjct: 324 LRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGC 383
Query: 158 VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217
++ Y L LC K E A+ +D + P +V+Y L+ A G + A
Sbjct: 384 TPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVE 443
Query: 218 IFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
I NQ+ + CSP L+T N ++ + G ++A+KL EM KGL PD
Sbjct: 444 ILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMK-----------GKGLK-PD 491
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRA 325
I T++T++ + E + D+ + + G+ NA + ++L +A
Sbjct: 492 IITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKA 540
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 109/249 (43%), Gaps = 17/249 (6%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N L VR + E F L+ + +G P ++ + GK ++
Sbjct: 114 NNHLRRLVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILED 173
Query: 121 S-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
S +P+ + Y VL++ KT E SA++ ++R + Y + R LC +GK +E
Sbjct: 174 SGAVPDVITYNVLISGYC---KTGEIGSALQLLDRMSVSPDVVTYNTILRTLCDSGKLKE 230
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVK 238
A+ +D+ + P V++YT LI+A + A + ++M++ C P++VT N+++
Sbjct: 231 AMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLIN 290
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G +EA++ M P++ T N +L + + RW D E
Sbjct: 291 GICKEGRLDEAIRFLNHMPSYGCQ------------PNVITHNIILRSMCSTGRWMDAEK 338
Query: 299 VYKRMLHHG 307
M+ G
Sbjct: 339 FLAEMIRKG 347
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 125/303 (41%), Gaps = 23/303 (7%)
Query: 55 PDIVVYNAVLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
PDI+ +++ C K W+ A V++ L+ G P TY +++ G+ +
Sbjct: 143 PDIIACTSLIRGLCKTGKTWK-ATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSALQ 201
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ S P+ + Y ++ TL GK EA+ ++ +R Y L C
Sbjct: 202 LLDRMSVS--PDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCK 259
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
+A+ +D++ KP VV+Y LI G + A N M ++ C PN++T
Sbjct: 260 ESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVIT 319
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
NI++++ G + +A K EM +KG P + TFN +++ +
Sbjct: 320 HNIILRSMCSTGRWMDAEKFLAEMI-----------RKGCS-PSVVTFNILINFLCRKGL 367
Query: 293 WDDLELVYKRMLHHG-----LHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPP 347
V ++M HG L +N H + D +E L+I D +T
Sbjct: 368 IGRAIDVLEKMPQHGCTPNSLSYNPLLH-ALCKDKKMERAIEYLDIMVSRGCYPDIVTYN 426
Query: 348 ALI 350
L+
Sbjct: 427 TLL 429
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 106/248 (42%), Gaps = 24/248 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM----------------RSLPKKKFKTGTLER 48
P V + + L + G I DV++ M +L K K +E
Sbjct: 350 PSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEY 409
Query: 49 WDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
D + PDIV YN +L A + + + A +L QL +G P TY V++ +
Sbjct: 410 LDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSK 469
Query: 105 CGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK + + +++ K P+ + Y LV L REGK DEA++ D+E G+ +A
Sbjct: 470 VGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAIT 529
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + LC A + A+ + + KP SY LI+ G + A + N++
Sbjct: 530 YNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNEL- 588
Query: 224 NFCSPNLV 231
CS +V
Sbjct: 589 --CSRGVV 594
>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
Length = 502
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 136/286 (47%), Gaps = 22/286 (7%)
Query: 26 LFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ 85
L D + R K LER R PD V YN + + R K A +L+Q+ +
Sbjct: 182 LLDALVKSRHAGKAASLVRALER---RFPPDAVTYNTLADGWCRVKDTSRALDILRQMVE 238
Query: 86 QGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK------SYIPNALAYKVLVNTLWRE 139
G P+ TTY ++++ G+ ++FF +++K + P+ ++Y +++ L
Sbjct: 239 SGIAPTKTTYNIILKGFFRSGQLQHAWDFFLQMKKRGSNDENCKPDVVSYTTVLHGLGVA 298
Query: 140 GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSY 199
G+ D+A ++M R G S A Y L + C G E+A+ D + + P VV+Y
Sbjct: 299 GQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAVFDDMIRKGYIPNVVTY 358
Query: 200 TGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
T LI+ +G I A + ++MK C PN+ T N+++ E G E+A+ LF+ M++
Sbjct: 359 TVLIRGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLIGYLFEEGDIEKALHLFETMSK 418
Query: 259 DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
+P+ T+N ++ A KR +D+ V RM+
Sbjct: 419 GEE-----------CLPNQDTYNIIISAMFVRKRAEDMA-VAARMV 452
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 19/207 (9%)
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
+ L++ L + +A S V +ERR A Y LA C AL + ++
Sbjct: 179 FNSLLDALVKSRHAGKAASLVRALERR-FPPDAVTYNTLADGWCRVKDTSRALDILRQMV 237
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF------CSPNLVTCNIMVKAYLE 242
+ P +Y +++ SG +Q+A F QMK C P++V+ ++
Sbjct: 238 ESGIAPTKTTYNIILKGFFRSGQLQHAWDFFLQMKKRGSNDENCKPDVVSYTTVLHGLGV 297
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G ++A K+F EM+ + P I T+N ++ + +D V+
Sbjct: 298 AGQLDKARKVFDEMSREG------------CTPSIATYNALIQVTCKKGNVEDAVAVFDD 345
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
M+ G N + +I AGK++
Sbjct: 346 MIRKGYIPNVVTYTVLIRGLCHAGKID 372
>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
Length = 479
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 144/277 (51%), Gaps = 4/277 (1%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
L+ + +P++V + ++N R + A +L ++ + G +P+ TYG +++ M
Sbjct: 70 LDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKM 129
Query: 106 GKYNLVYEFFRKVQK-SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G RK+++ S+I P+ + Y +++ LW++G+ +A + +M+ +GI
Sbjct: 130 GDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVT 189
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y + CS+GK EA + ++ P VV+++GLI A + G++ +A + +M
Sbjct: 190 YSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMI 249
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ PN+VTCN ++ + G ++A+++F+ M + I+ + G V PD+ T+N
Sbjct: 250 SSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNG-VEPDVQTYNI 308
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
++ E ++ + E +Y+ M H G+ + + MI
Sbjct: 309 LISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMI 345
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 30/278 (10%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
++ PD+V ++ ++NA V+ A +LQ++ G P+ T +++ + GK
Sbjct: 217 KISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDA 276
Query: 112 YEFFRKVQKSYI------------PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
E F+ +QKS + P+ Y +L++ L EGK EA E+M RGIV
Sbjct: 277 LEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP 336
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219
Y + LC + +EA D + + P +V++ LI +G + + +F
Sbjct: 337 DTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELF 396
Query: 220 NQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
+M + N +T +++ + + G ++ +FQEM V PD
Sbjct: 397 CEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSG------------VYPDTI 444
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316
T ML W EL + L + HL
Sbjct: 445 TIRNMLTG-----LWSKEELKRALAMLEELQMSMDHHL 477
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 94 TYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDM 152
++ ++++ +C K F K+ K + P + + L++ L E + EA+ M
Sbjct: 17 SFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM 76
Query: 153 ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI 212
+ +V + L LC G+ EA+ +D++ + +P ++Y ++ G+
Sbjct: 77 CKPNVV----TFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDT 132
Query: 213 QNAAYIFNQMKNF--CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270
+A + +M+ P++V + ++ + G +A LF EM + K
Sbjct: 133 VSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQD-----------K 181
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
G + PDI T++ M++ + +W + + + + ML
Sbjct: 182 G-IFPDIVTYSCMINGFCSSGKWSEAQRLLQEML 214
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 79/178 (44%), Gaps = 5/178 (2%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V ++ L +G +K D ++ +++ K ++ +EPD+ YN ++
Sbjct: 255 PNVVTCNTLLDGLCDSGKLK---DALEMFKAMQKSMMDIDATHAFNG-VEPDVQTYNILI 310
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + ++ A + +++ +G P TY ++ + + + + F + KS+
Sbjct: 311 SGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFS 370
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
PN + + L+ + G D+ + +M RRGIV +A Y L R G +L
Sbjct: 371 PNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSL 428
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 92/237 (38%), Gaps = 31/237 (13%)
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC 226
L +C CS K AL K+ K+ P +V++ L+ + A +F+QM C
Sbjct: 21 LIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM---C 77
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS---NHIN------------------- 264
PN+VT ++ G EA+ L M ED N I
Sbjct: 78 KPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALN 137
Query: 265 --REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA 322
R+ ++ + PD+ ++ ++D + R D + ++ M G+ + + MI
Sbjct: 138 LLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGF 197
Query: 323 SRAGK-VELLEITWEHLARADRITPPALIKERFCNRL-ENKDYGSAISCLVSHPVSG 377
+GK E + E L R +I+P + N L + D SA L SG
Sbjct: 198 CSSGKWSEAQRLLQEMLVR--KISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSG 252
>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
Length = 479
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 144/277 (51%), Gaps = 4/277 (1%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
L+ + +P++V + ++N R + A +L ++ + G +P+ TYG +++ M
Sbjct: 70 LDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKM 129
Query: 106 GKYNLVYEFFRKVQK-SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G RK+++ S+I P+ + Y +++ LW++G+ +A + +M+ +GI
Sbjct: 130 GDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVT 189
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y + CS+GK EA + ++ P VV+++GLI A + G++ +A + +M
Sbjct: 190 YSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMI 249
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ PN+VTCN ++ + G ++A+++F+ M + I+ + G V PD+ T+N
Sbjct: 250 SSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNG-VEPDVQTYNI 308
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
++ E ++ + E +Y+ M H G+ + + MI
Sbjct: 309 LISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMI 345
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 30/278 (10%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
++ PD+V ++ ++NA V+ A +LQ++ G P+ T +++ + GK
Sbjct: 217 KISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDA 276
Query: 112 YEFFRKVQKSYI------------PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
E F+ +QKS + P+ Y +L++ L EGK EA E+M RGIV
Sbjct: 277 LEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP 336
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219
Y + LC + +EA D + + P +V++ LI +G + + +F
Sbjct: 337 DTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELF 396
Query: 220 NQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
+M + N +T +++ + + G ++ +FQEM V PD
Sbjct: 397 CEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSG------------VYPDTI 444
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316
T ML W EL + L + HL
Sbjct: 445 TIRNMLTG-----LWSKEELKKALAMLEELQMSMDHHL 477
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 94 TYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDM 152
++ ++++ +C K F K+ K + P + + L++ L E + EA+ M
Sbjct: 17 SFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM 76
Query: 153 ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI 212
+ +V + L LC G+ EA+ +D++ + +P ++Y ++ G+
Sbjct: 77 CKPNVV----TFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDT 132
Query: 213 QNAAYIFNQMKNF--CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270
+A + +M+ P++V + ++ + G +A LF EM + K
Sbjct: 133 VSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQD-----------K 181
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
G + PDI T++ M++ + +W + + + + ML
Sbjct: 182 G-IFPDIVTYSCMINGFCSSGKWSEAQRLLQEML 214
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 79/178 (44%), Gaps = 5/178 (2%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V ++ L +G +K D ++ +++ K ++ +EPD+ YN ++
Sbjct: 255 PNVVTCNTLLDGLCDSGKLK---DALEMFKAMQKSMMDIDATHAFNG-VEPDVQTYNILI 310
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + ++ A + +++ +G P TY ++ + + + + F + KS+
Sbjct: 311 SGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFS 370
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
PN + + L+ + G D+ + +M RRGIV +A Y L R G +L
Sbjct: 371 PNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSL 428
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 92/237 (38%), Gaps = 31/237 (13%)
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC 226
L +C CS K AL K+ K+ P +V++ L+ + A +F+QM C
Sbjct: 21 LIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM---C 77
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS---NHIN------------------- 264
PN+VT ++ G EA+ L M ED N I
Sbjct: 78 KPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALN 137
Query: 265 --REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA 322
R+ ++ + PD+ ++ ++D + R D + ++ M G+ + + MI
Sbjct: 138 LLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGF 197
Query: 323 SRAGK-VELLEITWEHLARADRITPPALIKERFCNRL-ENKDYGSAISCLVSHPVSG 377
+GK E + E L R +I+P + N L + D SA L SG
Sbjct: 198 CSSGKWSEAQRLLQEMLVR--KISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSG 252
>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 489
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 132/278 (47%), Gaps = 21/278 (7%)
Query: 26 LFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ 85
L D + R K LER R PD+V YN + + R K A +L+Q+ +
Sbjct: 169 LLDALGKSRHASKAASLVRALER---RFPPDVVTYNTLADGWCRAKDTSRALDLLRQMAE 225
Query: 86 QGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK------SYIPNALAYKVLVNTLWRE 139
G P+ TTY ++++ G+ + FF +++K S P+ ++Y +++ L
Sbjct: 226 SGVTPTKTTYNIILKGFFRAGQIQHAWNFFLQMKKRGAKDESCKPDIVSYTTIIHGLGVA 285
Query: 140 GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSY 199
G+ D+A ++M + G S A Y L + +C G E+A+ D + + P VV+Y
Sbjct: 286 GQLDKARKLFDEMSKEGCTPSVATYNALIQVICKKGNVEDAVTVFDDMVRKDYMPNVVTY 345
Query: 200 TGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
T LI+ G I A + +MK C P + T N++++ E G E+A+ LF+ M++
Sbjct: 346 TVLIRGLCHVGKIDRAMKLMERMKGEGCEPVVQTYNVLIRYSFEEGEIEKALCLFERMSK 405
Query: 259 DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ +P+ T+N ++ A KR +D+
Sbjct: 406 GED-----------CLPNQDTYNIIISAMFVRKRAEDM 432
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 16/154 (10%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S PD V+Y +I LG AG + + + D M K G P + YN
Sbjct: 267 SCKPDIVSYTTIIHGLGVAGQLDKARKLFDEMS-------KEGC--------TPSVATYN 311
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-K 120
A++ ++ E A V + ++ P+ TY +++ + GK + + +++ +
Sbjct: 312 ALIQVICKKGNVEDAVTVFDDMVRKDYMPNVVTYTVLIRGLCHVGKIDRAMKLMERMKGE 371
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
P Y VL+ + EG+ ++A+ E M +
Sbjct: 372 GCEPVVQTYNVLIRYSFEEGEIEKALCLFERMSK 405
>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
Length = 725
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 156/327 (47%), Gaps = 30/327 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y ++ L + + E V+D M ++R +P+++ Y ++
Sbjct: 112 PDVVSYTTVINGLCKLDQVDEACRVMDKM------------IQRG---CQPNVITYGTLV 156
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ R +GA +++++ ++G +P+A TY +M + + K + + F+++++S
Sbjct: 157 DGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSC 216
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ Y +V++L + GK D+A VE M +G + Y L LC AGK +EA
Sbjct: 217 PPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATA 276
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ ++ + P +V+Y +I G I A ++ +M C PN+VT +++ A+
Sbjct: 277 LLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFC 336
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G E+A+ L + M E KG V P+++T+N++LD + + +
Sbjct: 337 KCGKAEDAIGLVEVMVE-----------KGYV-PNLFTYNSLLDMFCKKDEVERACQLLS 384
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKV 328
M+ G N + +I +A KV
Sbjct: 385 SMIQKGCVPNVVSYNTVIAGLCKATKV 411
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 160/363 (44%), Gaps = 37/363 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD+V Y ++ L ++ + D++R L E D P++ YN VL
Sbjct: 42 PDSVTYNTMINGLSKSDRLD------DAIRLLE---------EMVDNGFAPNVFSYNTVL 86
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + E A W+L+Q+ +G P +Y V+ + + + K +Q+
Sbjct: 87 HGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQ 146
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y LV+ R G D AV V M RG +A Y ++ LCS K + AL
Sbjct: 147 PNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQL 206
Query: 184 MDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
++ + + P V +Y+ ++ + + SG + +A + M CSPN+VT + ++
Sbjct: 207 FKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLC 266
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G +EA L Q M P+I T+NT++D R D+ + +
Sbjct: 267 KAGKLDEATALLQRMTRSGCS------------PNIVTYNTIIDGHCKLGRIDEAYHLLE 314
Query: 302 RMLHHGLHFNAKRHLRMILDA-SRAGKVE----LLEITWEHLARADRITPPALIKERFCN 356
M+ G N + ++LDA + GK E L+E+ E + T +L+ + FC
Sbjct: 315 EMVDGGCQPNVVTY-TVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLL-DMFCK 372
Query: 357 RLE 359
+ E
Sbjct: 373 KDE 375
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 142/333 (42%), Gaps = 41/333 (12%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S PD Y +I +L ++G + + ++++M S P++V Y+
Sbjct: 215 SCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVS---------------KGCSPNVVTYS 259
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQK 120
++L+ + + + A +LQ++ + G P+ TY +++ G+ + Y + V
Sbjct: 260 SLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDG 319
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
PN + Y VL++ + GK ++A+ VE M +G V + Y L C + E A
Sbjct: 320 GCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERA 379
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
+ + + P VVSY +I + + + QM N C P++VT N ++ A
Sbjct: 380 CQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDA 439
Query: 240 YLEHGLFEEAMKLFQEMAED------------------------SNHINREYDKKGLVIP 275
+ + A +LF + E + ++ RE +K P
Sbjct: 440 MCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSP 499
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
DI T+NT++D KR D ++ +ML GL
Sbjct: 500 DIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGL 532
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/284 (20%), Positives = 126/284 (44%), Gaps = 25/284 (8%)
Query: 83 LKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKT 142
+ ++G K A + ++ + G+ + FR++ K+ P+++ Y ++N L + +
Sbjct: 1 MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRL 60
Query: 143 DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGL 202
D+A+ +E+M G + Y + C A + E AL ++++ P VVSYT +
Sbjct: 61 DDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTV 120
Query: 203 IQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSN 261
I + A + ++M + C PN++T +V + G + A++L ++M E
Sbjct: 121 INGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGY 180
Query: 262 HIN------------------------REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
N +E ++ G PD++T++T++D+ + DD
Sbjct: 181 RPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDAC 240
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
+ + M+ G N + ++ +AGK++ + + R+
Sbjct: 241 RLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRS 284
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 129/300 (43%), Gaps = 35/300 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V+Y ++ L +A + E +++ M S PDIV +N ++
Sbjct: 393 PNVVSYNTVIAGLCKATKVHEGVLLLEQMLS---------------NNCVPDIVTFNTII 437
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN----LVYEFFRKVQK 120
+A + + + A+ + +++ G P+ TY ++ + +++ L+ E RK
Sbjct: 438 DAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGC 497
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
S P+ + Y +++ L + + D A M G+ Y + LC +EA
Sbjct: 498 S--PDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEA 555
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKA 239
++ + K P ++Y LI +GN+ A I + + S P++VT +I +
Sbjct: 556 NNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDW 615
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLEL 298
+ G +A +L + M + GLV PD T+NT+L C A + D ++L
Sbjct: 616 LSKRGRLRQAGELLETML-----------RAGLV-PDTVTYNTLLKGFCDASRTEDAVDL 663
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/221 (20%), Positives = 97/221 (43%), Gaps = 7/221 (3%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA---CGKYNLV 111
PDI+ YN V++ + K+ + A+ + Q+ G P TY +V+ + + N V
Sbjct: 499 PDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNV 558
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E K + P A+ Y L++ + G D+A+ ++ + +G + L
Sbjct: 559 LELMLK--NGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWL 616
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
G+ +A ++ + + P V+Y L++ D+ ++A +F M+ C P+
Sbjct: 617 SKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDN 676
Query: 231 VTCNIMVKAYLEHGLFEEAM-KLFQEMAEDSNHINREYDKK 270
T +V ++ +++ + ++ + M + +N E K
Sbjct: 677 ATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSK 717
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 90/205 (43%), Gaps = 16/205 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ L ++ + + + L+ L PD V Y+ V+
Sbjct: 499 PDIITYNTVIDGLCKSKRVDRAYKLF---------------LQMLSDGLAPDDVTYSIVI 543
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
++ + + + A VL+ + + G P A TYG +++ G + E + + K
Sbjct: 544 SSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSY 603
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + + ++ L + G+ +A +E M R G+V Y L + C A + E+A+
Sbjct: 604 PDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDL 663
Query: 184 MDKICKVANKPLVVSYTGLIQACLD 208
+ + + +P +YT L+ +D
Sbjct: 664 FEVMRQCGCEPDNATYTTLVGHLVD 688
>gi|357143144|ref|XP_003572818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Brachypodium distachyon]
Length = 496
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 136/286 (47%), Gaps = 21/286 (7%)
Query: 26 LFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ 85
L D + R K LER R PD+V YN + + R K A +L+Q+ +
Sbjct: 176 LLDALGKSRHASKAASLVRALER---RFPPDVVTYNTLADGWCRVKDTSRALDLLRQMAE 232
Query: 86 QGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK------SYIPNALAYKVLVNTLWRE 139
G P+ TTY ++++ G+ + FF +++K + P+ ++Y +++ L
Sbjct: 233 SGIAPTKTTYNVILKGFFRAGQLQHAWNFFLQMKKRGSKDENCKPDVVSYTTIIHGLGVA 292
Query: 140 GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSY 199
G+ D+A ++M + G + A Y L + +C G E+A+ D + + P VV+Y
Sbjct: 293 GQLDKARKLFDEMSKEGCPPTIATYNALIQVICKKGNVEDAVTVFDDMIRKDYIPNVVTY 352
Query: 200 TGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
T LI+ G I A + +MKN C P + T N++++ E G ++A+ LF+ M++
Sbjct: 353 TVLIRGLCHVGKIDRAMKLMERMKNEGCEPVVQTYNVLIRYSFEEGEMDKALHLFERMSK 412
Query: 259 DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
+P+ T+N ++ A KR +D+ + + ++
Sbjct: 413 GEE-----------CLPNQDTYNIVISAMFVRKRAEDMAIAARMVM 447
>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
Length = 740
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 158/351 (45%), Gaps = 40/351 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P++V Y ++ L G + E D+++ M + +EP + Y +
Sbjct: 266 PNSVTYSTLINGLCNEGRVDEALDMLEEM---------------IEKGIEPTVYTYTLPI 310
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
A + E A ++ ++K++G +P+ TY ++ + GK + + K+ K +
Sbjct: 311 TALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLV 370
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L+N L G+ A+ ME G + + Y ++ + LC G E+A++
Sbjct: 371 PNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVL 430
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+K+ K+ P VV+Y LI L GN+ NAA + + MK N C P+ T N +V + +
Sbjct: 431 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 490
Query: 243 HGLFEEAMKLFQEMAE---DSNHINRE-----YDKKGLVI---------------PDIYT 279
G E A FQEM E + N ++ + K G V P++ +
Sbjct: 491 WGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVES 550
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+N +++ + E R+ + E + +M+ GL N + +I R G+ +
Sbjct: 551 YNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQF 601
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 138/316 (43%), Gaps = 29/316 (9%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S +T Y I L G I++ + + M K G L P +V YN
Sbjct: 403 GSLANTQTYNEIIKGLCLGGDIEKAMVLFEKM-------LKMGPL--------PTVVTYN 447
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQK 120
++N + + A +L +K+ G +P TY ++ GK +F++ V+
Sbjct: 448 TLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVEC 507
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
PN ++Y L++ ++GK D A+S ++ ME G + Y + L + EA
Sbjct: 508 GLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEA 567
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
DK+ + P V++YT LI +G Q A IF+ M K C PNL T + ++
Sbjct: 568 EKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYG 627
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ G +EA L +EM ++KGL PD TF +++D R D L+
Sbjct: 628 LCQEGKADEAEILLKEM-----------ERKGLA-PDEVTFTSLIDGFVVLGRIDHAFLL 675
Query: 300 YKRMLHHGLHFNAKRH 315
+RM+ G N + +
Sbjct: 676 LRRMVDMGCKPNYRTY 691
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 150/330 (45%), Gaps = 37/330 (11%)
Query: 27 FDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ 86
F++++ R+L K+ +G ++P ++ +N ++N ++ + A +L Q+ Q
Sbjct: 176 FEMVEGARNLYKQMLNSG--------IQPSLLTFNTLINILSKKGKVREAELILSQIFQY 227
Query: 87 GQKPSATTYGLVMEVMLACGKYNLVYEFF---RKVQKSYIPNALAYKVLVNTLWREGKTD 143
P TY + ++ C NL F R V++ PN++ Y L+N L EG+ D
Sbjct: 228 DLSPDVFTYTSL--ILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVD 285
Query: 144 EAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLI 203
EA+ +E+M +GI + Y LC+ EEA+ + ++ K +P V +YT LI
Sbjct: 286 EALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALI 345
Query: 204 QACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNH 262
G ++ A ++++M K PN VT N ++ G F A+K+F M +
Sbjct: 346 SGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSL 405
Query: 263 INRE-YDK--KGLV--------------------IPDIYTFNTMLDACAAEKRWDDLELV 299
N + Y++ KGL +P + T+NT+++ + ++ +
Sbjct: 406 ANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARL 465
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
M +G + + ++ S+ GK+E
Sbjct: 466 LDLMKENGCEPDEWTYNELVSGFSKWGKLE 495
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 140/331 (42%), Gaps = 35/331 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y S+ + + ++ F V D M K G +P+ V Y+ ++
Sbjct: 231 PDVFTYTSLILGHCRNRNLDLAFGVFDRM-------VKEGC--------DPNSVTYSTLI 275
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + + A +L+++ ++G +P+ TY L + + A E +++K
Sbjct: 276 NGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCR 335
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y L++ L R GK + A+ M + G+V + Y L LC G+ AL
Sbjct: 336 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKI 395
Query: 184 ---MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKA 239
M+ +AN +Y +I+ G+I+ A +F +M P +VT N ++
Sbjct: 396 FHWMEGHGSLANTQ---TYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLING 452
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
YL G A +L M E+ PD +T+N ++ + + +
Sbjct: 453 YLTKGNVNNAARLLDLMKENGCE------------PDEWTYNELVSGFSKWGKLESASFY 500
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
++ M+ GL+ N + +I S+ GKV++
Sbjct: 501 FQEMVECGLNPNPVSYTALIDGHSKDGKVDI 531
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 99/198 (50%), Gaps = 2/198 (1%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P+ V Y A+++ + + + A +L+++++ G P+ +Y V+ + +++
Sbjct: 509 LNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAE 568
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ K V++ +PN + Y L++ L R G+T A DME+R + + Y L L
Sbjct: 569 KICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGL 628
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C GK +EA + + ++ + P V++T LI + G I +A + +M + C PN
Sbjct: 629 CQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNY 688
Query: 231 VTCNIMVKAYLEHGLFEE 248
T ++++K + L E
Sbjct: 689 RTYSVLLKGLQKECLLLE 706
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 117/282 (41%), Gaps = 14/282 (4%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-Q 119
N +L + + EGA + +Q+ G +PS T+ ++ ++ GK ++ Q
Sbjct: 167 NTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQ 226
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
P+ Y L+ R D A + M + G ++ Y L LC+ G+ +E
Sbjct: 227 YDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDE 286
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVK 238
AL ++++ + +P V +YT I A C + + K C PN+ T ++
Sbjct: 287 ALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALIS 346
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
G E A+ L+ +M K+GLV P+ T+N +++ R+
Sbjct: 347 GLSRLGKLEVAIGLYHKML-----------KEGLV-PNTVTYNALINELCVGGRFSTALK 394
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
++ M HG N + + +I G +E + +E + +
Sbjct: 395 IFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLK 436
>gi|147858133|emb|CAN83935.1| hypothetical protein VITISV_035769 [Vitis vinifera]
Length = 490
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 69/97 (71%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD AY S+AVTLGQAG +KEL ++I+ MR P K+ K + W+ LEPD+V++NAV
Sbjct: 268 YPDMAAYHSVAVTLGQAGLLKELLNIIECMRQKPPKRIKNMCRKNWNALLEPDVVIFNAV 327
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
LNACV +QW+G WV +QL++ KP+ TYGL ME
Sbjct: 328 LNACVPTQQWKGVSWVFKQLRKCSLKPNGATYGLAME 364
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMKNFCS--PNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
YT L+ + A IFN M+ C P++ + + + GL +E + + + M
Sbjct: 238 YTKLLAVLGKAKRPHEALDIFNLMRGDCHIYPDMAAYHSVAVTLGQAGLLKELLNIIECM 297
Query: 257 AEDSNHINREYDKK---GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
+ + +K L+ PD+ FN +L+AC ++W + V+K++ L N
Sbjct: 298 RQKPPKRIKNMCRKNWNALLEPDVVIFNAVLNACVPTQQWKGVSWVFKQLRKCSLKPNG 356
>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
Length = 413
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 143/306 (46%), Gaps = 29/306 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D Y + LG+AG + +V +M+ K G + PD VVYN +++
Sbjct: 116 DVFTYSYLMDALGKAGRAAKALEVFSNMQ-------KAGCM--------PDTVVYNVLIS 160
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIP 124
++ + + A +L+ + ++G P TY +V++V+ +CG+Y Y FF +++ + P
Sbjct: 161 CLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSP 220
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ + Y L+N L + +TDEA ++M+ + + L L AG+ E+AL Q
Sbjct: 221 DVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQS 280
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
++ K+ + P Y LI SG + +F M + C P+ +T I+V +
Sbjct: 281 ARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRR 340
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G AM+L QEM + + P + T+N ++ + + + +D ++K M
Sbjct: 341 GHTSMAMELLQEMVREGH------------TPALATYNVLIRSLSMAGQVEDAYTLFKEM 388
Query: 304 LHHGLH 309
+ G +
Sbjct: 389 IAKGFN 394
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/359 (21%), Positives = 146/359 (40%), Gaps = 35/359 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS-----------------LPKKKFKTGTL- 46
PD VAY ++ +AG D+ ++ L K T L
Sbjct: 9 PDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALA 68
Query: 47 ---ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
E L+ D+ V N +++ R A +L + TY +M+ +
Sbjct: 69 VFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDALG 128
Query: 104 ACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G+ E F +QK+ +P+ + Y VL++ L ++GK DEA+ +EDM R+GI+
Sbjct: 129 KAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCR 188
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y + L S G+ E+A + + + P VV+Y L+ A +F++M
Sbjct: 189 TYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEM 248
Query: 223 K-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
+ N C P+L T ++ + G E+A++ + + + +P+ Y +N
Sbjct: 249 QANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGH------------VPNSYIYN 296
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
++ + D +++ M+ ++ + ++L SR G + + + R
Sbjct: 297 ALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVR 355
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 111/253 (43%), Gaps = 28/253 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKE----------------------LFDVIDSMRSLPKKKFK 42
PDTV Y + LG+ G + E + DV+ S K
Sbjct: 150 PDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSF 209
Query: 43 TGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
G ++R + PD+V YN +LN + ++ + A + +++ P TT+G +++ +
Sbjct: 210 FGMMKRR--KHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTL 267
Query: 103 LACGKY-NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
G+ + + + R V+ ++PN+ Y L++ R G+ D+ +DM +
Sbjct: 268 AKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDS 327
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L G A+ + ++ + + P + +Y LI++ +G +++A +F +
Sbjct: 328 ITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKE 387
Query: 222 M--KNFCSPNLVT 232
M K F +P++ T
Sbjct: 388 MIAKGF-NPDMQT 399
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 16/199 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ L + E D+ D M++ + PD+ + ++
Sbjct: 220 PDVVTYNTLLNGLKKLRRTDEACDLFDEMQA---------------NKCMPDLTTFGTLI 264
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + E A +L + G P++ Y ++ G+ + YE F+ ++ S
Sbjct: 265 DTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCF 324
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+++ Y +LV R G T A+ +++M R G + A Y L R L AG+ E+A
Sbjct: 325 PDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTL 384
Query: 184 MDKICKVANKPLVVSYTGL 202
++ P + +Y+ L
Sbjct: 385 FKEMIAKGFNPDMQTYSAL 403
>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 822
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 158/351 (45%), Gaps = 40/351 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P++V Y ++ L G + E D+++ M + +EP + Y +
Sbjct: 266 PNSVTYSTLINGLCNEGRVDEALDMLEEM---------------IEKGIEPTVYTYTLPI 310
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
A + E A ++ ++K++G +P+ TY ++ + GK + + K+ K +
Sbjct: 311 TALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLV 370
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L+N L G+ A+ ME G + + Y ++ + LC G E+A++
Sbjct: 371 PNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVL 430
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+K+ K+ P VV+Y LI L GN+ NAA + + MK N C P+ T N +V + +
Sbjct: 431 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 490
Query: 243 HGLFEEAMKLFQEMAE---DSNHINRE-----YDKKGLVI---------------PDIYT 279
G E A FQEM E + N ++ + K G V P++ +
Sbjct: 491 WGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVES 550
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+N +++ + E R+ + E + +M+ GL N + +I R G+ +
Sbjct: 551 YNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQF 601
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 150/330 (45%), Gaps = 37/330 (11%)
Query: 27 FDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ 86
F++++ R+L K+ +G ++P ++ +N ++N ++ + A +L Q+ Q
Sbjct: 176 FEMVEGARNLYKQMLNSG--------IQPSLLTFNTLINILSKKGKVREAELILSQIFQY 227
Query: 87 GQKPSATTYGLVMEVMLACGKYNLVYEFF---RKVQKSYIPNALAYKVLVNTLWREGKTD 143
P TY + ++ C NL F R V++ PN++ Y L+N L EG+ D
Sbjct: 228 DLSPDVFTYTSL--ILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVD 285
Query: 144 EAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLI 203
EA+ +E+M +GI + Y LC+ EEA+ + ++ K +P V +YT LI
Sbjct: 286 EALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALI 345
Query: 204 QACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNH 262
G ++ A ++++M K PN VT N ++ G F A+K+F M +
Sbjct: 346 SGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSL 405
Query: 263 INRE-YDK--KGLV--------------------IPDIYTFNTMLDACAAEKRWDDLELV 299
N + Y++ KGL +P + T+NT+++ + ++ +
Sbjct: 406 ANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARL 465
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
M +G + + ++ S+ GK+E
Sbjct: 466 LDLMKENGCEPDEWTYNELVSGFSKWGKLE 495
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 140/331 (42%), Gaps = 35/331 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y S+ + + ++ F V D M K G +P+ V Y+ ++
Sbjct: 231 PDVFTYTSLILGHCRNRNLDLAFGVFDRM-------VKEGC--------DPNSVTYSTLI 275
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + + A +L+++ ++G +P+ TY L + + A E +++K
Sbjct: 276 NGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCR 335
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM- 182
PN Y L++ L R GK + A+ M + G+V + Y L LC G+ AL
Sbjct: 336 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKI 395
Query: 183 --QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKA 239
M+ +AN +Y +I+ G+I+ A +F +M P +VT N ++
Sbjct: 396 FHWMEGHGSLANTQ---TYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLING 452
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
YL G A +L M E+ PD +T+N ++ + + +
Sbjct: 453 YLTKGNVNNAARLLDLMKENGCE------------PDEWTYNELVSGFSKWGKLESASFY 500
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
++ M+ GL+ N + +I S+ GKV++
Sbjct: 501 FQEMVECGLNPNPVSYTALIDGHSKDGKVDI 531
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 130/309 (42%), Gaps = 33/309 (10%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S +T Y I L G I++ + + M K G L P +V YN
Sbjct: 403 GSLANTQTYNEIIKGLCLGGDIEKAMVLFEKM-------LKMGPL--------PTVVTYN 447
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQK 120
++N + + A +L +K+ G +P TY ++ GK +F++ V+
Sbjct: 448 TLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVEC 507
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
PN ++Y L++ ++GK D A+S ++ ME G + Y + L + EA
Sbjct: 508 GLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEA 567
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
DK+ + P V++YT LI +G Q A IF+ M K C PNL T + ++
Sbjct: 568 EKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYG 627
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ G +EA ++ + E P + T++T++ + R+ + E +
Sbjct: 628 LCQEGKADEAERMSEIGCE----------------PTLDTYSTLVSGLCRKGRFYEAEQL 671
Query: 300 YKRMLHHGL 308
K M G
Sbjct: 672 VKDMKERGF 680
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 117/282 (41%), Gaps = 14/282 (4%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-Q 119
N +L + + EGA + +Q+ G +PS T+ ++ ++ GK ++ Q
Sbjct: 167 NTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQ 226
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
P+ Y L+ R D A + M + G ++ Y L LC+ G+ +E
Sbjct: 227 YDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDE 286
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVK 238
AL ++++ + +P V +YT I A C + + K C PN+ T ++
Sbjct: 287 ALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALIS 346
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
G E A+ L+ +M K+GLV P+ T+N +++ R+
Sbjct: 347 GLSRLGKLEVAIGLYHKML-----------KEGLV-PNTVTYNALINELCVGGRFSTALK 394
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
++ M HG N + + +I G +E + +E + +
Sbjct: 395 IFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLK 436
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 117/285 (41%), Gaps = 48/285 (16%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V+Y ++ GH K+ +D SL K+ + G P++ YNAV+
Sbjct: 511 PNPVSYTALI-----DGHSKD--GKVDIALSLLKRMEEMGC--------NPNVESYNAVI 555
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
N + ++ A + ++ +QG P+ TY +++ + G+ ++ F ++K +
Sbjct: 556 NGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCL 615
Query: 124 PNALAYKVLVNTLWREGKTDEA------------------VSA-------------VEDM 152
PN Y L+ L +EGK DEA VS V+DM
Sbjct: 616 PNLYTYSSLIYGLCQEGKADEAERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDM 675
Query: 153 ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI 212
+ RG +YY L C + + AL I + + Y LI A +G +
Sbjct: 676 KERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQV 735
Query: 213 QNAAYIF-NQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+ A +F N ++ + + + ++V L+ G + MKL M
Sbjct: 736 EEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIM 780
>gi|218191356|gb|EEC73783.1| hypothetical protein OsI_08468 [Oryza sativa Indica Group]
Length = 616
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 136/284 (47%), Gaps = 19/284 (6%)
Query: 26 LFDVIDSMRSLPKKKFKTGTLER-WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLK 84
LF+ + S + K +L R + R PD+V YN + + R K A VL+ +
Sbjct: 167 LFNSLLDALSKSRHAGKAASLVRALEQRFTPDVVTYNTLADGWCRVKDTSRALDVLRLMV 226
Query: 85 QQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK------SYIPNALAYKVLVNTLWR 138
+ G P+ TTY ++++ G+ ++FF +++K S P+ ++Y +V+ L
Sbjct: 227 ESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGLGV 286
Query: 139 EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
G+ ++A ++M + G S A Y L + +C G E+A+ D + P VV+
Sbjct: 287 AGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMLVKGYVPNVVT 346
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
YT LI+ +G I + +MKN C P + T N++++ E G E+ + LF++M+
Sbjct: 347 YTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFEEGEMEKGLDLFEKMS 406
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ +P+ T+N ++ A KR +D+ L +
Sbjct: 407 KGEE-----------CLPNQDTYNIIISAMFMRKRAEDMVLAAR 439
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 16/154 (10%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S PD V+Y ++ LG AG +++ V D M K G P + YN
Sbjct: 269 SCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMA-------KEGC--------APSVATYN 313
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
A++ ++ E A V + +G P+ TY +++ + GK + + +++
Sbjct: 314 ALIQVICKKGNVEDAVTVFDGMLVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNG 373
Query: 122 YI-PNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
P Y VL+ L+ EG+ ++ + E M +
Sbjct: 374 GCEPIVQTYNVLIRYLFEEGEMEKGLDLFEKMSK 407
>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
Length = 962
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 157/351 (44%), Gaps = 40/351 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P++V Y ++ L G + E D+++ M + +EP + Y +
Sbjct: 308 PNSVTYSTLINGLCNEGRVDEALDMLEEM---------------IEKGIEPTVYTYTLPI 352
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
A + E A ++ ++K++G +P+ TY ++ + GK + + K+ K +
Sbjct: 353 TALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLV 412
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L+N L G+ A+ ME G + + Y ++ + LC G E+A++
Sbjct: 413 PNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVL 472
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+K+ K+ P VV+Y LI L GN+ NAA + + MK N C P+ T N +V + +
Sbjct: 473 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 532
Query: 243 HGLFEEAMKLFQEMAE---DSNHINRE-----YDKKGLVI---------------PDIYT 279
G E A FQEM E + N ++ + K G V P++ +
Sbjct: 533 WGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVES 592
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+N +++ + E R+ + E + +M GL N + +I R G+ +
Sbjct: 593 YNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQF 643
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 138/316 (43%), Gaps = 29/316 (9%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S +T Y I L G I++ + + M K G L P +V YN
Sbjct: 445 GSLANTQTYNEIIKGLCLGGDIEKAMVLFEKM-------LKMGPL--------PTVVTYN 489
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQK 120
++N + + A +L +K+ G +P TY ++ GK +F++ V+
Sbjct: 490 TLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVEC 549
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
PN ++Y L++ ++GK D A+S +E ME G + Y + L + EA
Sbjct: 550 GLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEA 609
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
DK+ + P V++YT LI +G Q A IF+ M K C PNL T + ++
Sbjct: 610 EKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYG 669
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ G +EA L +EM ++KGL PD TF +++D R D L+
Sbjct: 670 LCQEGKADEAEILLKEM-----------ERKGLA-PDEVTFTSLIDGFVVLGRIDHAFLL 717
Query: 300 YKRMLHHGLHFNAKRH 315
+RM+ G N + +
Sbjct: 718 LRRMVDVGCKPNYRTY 733
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 150/330 (45%), Gaps = 37/330 (11%)
Query: 27 FDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ 86
F++++ R+L K+ +G ++P ++ +N ++N ++ + A +L Q+ Q
Sbjct: 218 FEMVEGARNLYKQMLNSG--------IQPSLLTFNTLINILSKKGKVREAELILSQIFQY 269
Query: 87 GQKPSATTYGLVMEVMLACGKYNLVYEFF---RKVQKSYIPNALAYKVLVNTLWREGKTD 143
P TY + ++ C NL F R V++ PN++ Y L+N L EG+ D
Sbjct: 270 DLSPDVFTYTSL--ILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVD 327
Query: 144 EAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLI 203
EA+ +E+M +GI + Y LC+ EEA+ + ++ K +P V +YT LI
Sbjct: 328 EALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALI 387
Query: 204 QACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNH 262
G ++ A ++++M K PN VT N ++ G F A+K+F M +
Sbjct: 388 SGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSL 447
Query: 263 INRE-YDK--KGLV--------------------IPDIYTFNTMLDACAAEKRWDDLELV 299
N + Y++ KGL +P + T+NT+++ + ++ +
Sbjct: 448 ANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARL 507
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
M +G + + ++ S+ GK+E
Sbjct: 508 LDLMKENGCEPDEWTYNELVSGFSKWGKLE 537
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 148/357 (41%), Gaps = 51/357 (14%)
Query: 29 VIDSMRSLPKKKFKTGTLERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG 87
+ID K LER + P++ YNAV+N + ++ A + ++ +QG
Sbjct: 561 LIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQG 620
Query: 88 QKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAV 146
P+ TY +++ + G+ ++ F ++K +PN Y L+ L +EGK DEA
Sbjct: 621 LLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAE 680
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYT----GL 202
+++MER+G+ + L G+ + A + + ++ V KP +Y+ GL
Sbjct: 681 ILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGL 740
Query: 203 IQACL---DSGNIQN-AAYIFNQMK---NF--------------CSPNLVTCNIMVKAYL 241
+ CL + +Q+ A Y F+ + NF C P L T + +V
Sbjct: 741 QKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLC 800
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G F EA +L ++M E +G PD + ++L A D ++
Sbjct: 801 RKGRFYEAEQLVKDMKE-----------RGFC-PDREIYYSLLIAHCKNLEVDHALKIFH 848
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVE--------LLEITWEHLARADRITPPALI 350
+ G + + +I +AG+VE +LE W AD I L+
Sbjct: 849 SIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEW----NADEIVWTVLV 901
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 105/207 (50%), Gaps = 7/207 (3%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P+ V Y +++ + + + A +L+++++ G P+ +Y V+ + +++
Sbjct: 551 LNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAE 610
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ K+ ++ +PN + Y L++ L R G+T A DME+R + + Y L L
Sbjct: 611 KICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGL 670
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C GK +EA + + ++ + P V++T LI + G I +A + +M + C PN
Sbjct: 671 CQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNY 730
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMA 257
T ++++K GL +E + L +++A
Sbjct: 731 RTYSVLLK-----GLQKECLLLEEKVA 752
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 117/282 (41%), Gaps = 14/282 (4%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-Q 119
N +L + + EGA + +Q+ G +PS T+ ++ ++ GK ++ Q
Sbjct: 209 NTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQ 268
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
P+ Y L+ R D A + M + G ++ Y L LC+ G+ +E
Sbjct: 269 YDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDE 328
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVK 238
AL ++++ + +P V +YT I A C + + K C PN+ T ++
Sbjct: 329 ALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALIS 388
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
G E A+ L+ +M K+GLV P+ T+N +++ R+
Sbjct: 389 GLSRLGKLEVAIGLYHKML-----------KEGLV-PNTVTYNALINELCVGGRFSTALK 436
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
++ M HG N + + +I G +E + +E + +
Sbjct: 437 IFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLK 478
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 113/278 (40%), Gaps = 41/278 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y S+ L Q G D L K+ + G L PD V + +++
Sbjct: 658 PNLYTYSSLIYGLCQEGKA-------DEAEILLKEMERKG--------LAPDEVTFTSLI 702
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVML----ACGKYNLVYEFF 115
+ V + + AF +L+++ G KP+ TY GL E +L ++ VY F
Sbjct: 703 DGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFS 762
Query: 116 ---RKVQKSYIPNALA-------------YKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+ V + N LA Y LV+ L R+G+ EA V+DM+ RG
Sbjct: 763 PHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCP 822
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219
+YY L C + + AL I + + Y LI A +G ++ A +F
Sbjct: 823 DREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALF 882
Query: 220 -NQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
N ++ + + + ++V L+ G + MKL M
Sbjct: 883 DNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIM 920
>gi|115447913|ref|NP_001047736.1| Os02g0679200 [Oryza sativa Japonica Group]
gi|50253128|dbj|BAD29374.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537267|dbj|BAF09650.1| Os02g0679200 [Oryza sativa Japonica Group]
Length = 491
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 136/284 (47%), Gaps = 19/284 (6%)
Query: 26 LFDVIDSMRSLPKKKFKTGTLER-WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLK 84
LF+ + S + K +L R + R PD+V YN + + R K A VL+ +
Sbjct: 167 LFNSLLDALSKSRHAGKAASLVRALEQRFTPDVVTYNTLADGWCRVKDTSRALDVLRLMV 226
Query: 85 QQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK------SYIPNALAYKVLVNTLWR 138
+ G P+ TTY ++++ G+ ++FF +++K S P+ ++Y +V+ L
Sbjct: 227 ESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGLGV 286
Query: 139 EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
G+ ++A ++M + G S A Y L + +C G E+A+ D + P VV+
Sbjct: 287 AGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMRVKGYVPNVVT 346
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
YT LI+ +G I + +MKN C P + T N++++ E G E+ + LF++M+
Sbjct: 347 YTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFEEGEMEKGLDLFEKMS 406
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ +P+ T+N ++ A KR +D+ L +
Sbjct: 407 KGEE-----------CLPNQDTYNIIISAMFMRKRAEDMVLAAR 439
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 16/154 (10%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S PD V+Y ++ LG AG +++ V D M K G P + YN
Sbjct: 269 SCKPDVVSYTTMVHGLGVAGQLEKARKVFDEM-------AKEGC--------APSVATYN 313
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
A++ ++ E A V ++ +G P+ TY +++ + GK + + +++
Sbjct: 314 ALIQVICKKGNVEDAVTVFDGMRVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNG 373
Query: 122 YI-PNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
P Y VL+ L+ EG+ ++ + E M +
Sbjct: 374 GCEPIVQTYNVLIRYLFEEGEMEKGLDLFEKMSK 407
>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
Length = 729
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 141/315 (44%), Gaps = 33/315 (10%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPDIV YN ++NA + A +L L G KP A TY V++ + ++ V E
Sbjct: 229 EPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEE 288
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F ++ + P+ + + +V +L ++G D A+ V+ M G + Y + LC
Sbjct: 289 LFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLC 348
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLV 231
G+ ++A+ + ++ KP ++YT +++ ++A + +M + C P+ V
Sbjct: 349 DVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEV 408
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI----------------- 274
T N ++ + + GL + A+K+ ++M+E N N + +I
Sbjct: 409 TFNTVIASLCQKGLVDRAIKVVEQMSE--NGCNPDIVTYNSIIDGLCNERCIDDAMELLS 466
Query: 275 --------PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
PDI TFNT+L + RW+D E + M+H +A +I + G
Sbjct: 467 NLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKG 526
Query: 327 ----KVELLEITWEH 337
+E L+I E+
Sbjct: 527 LLLQAIETLKIMAEN 541
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 73/341 (21%), Positives = 136/341 (39%), Gaps = 66/341 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + +I +L Q G + V+D M + G + PDIV Y+++L
Sbjct: 300 PDEVTFNTIVTSLCQQGLVDRAIKVVDHMS-------EHGCI--------PDIVTYSSIL 344
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + A +L +LK G KP Y V++ + + ++ E + V
Sbjct: 345 DGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCP 404
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + ++ +L ++G D A+ VE M G Y + LC+ ++A+
Sbjct: 405 PDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMEL 464
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNA---------------AYIFNQM------ 222
+ + KP +V++ L++ ++A A FN +
Sbjct: 465 LSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQ 524
Query: 223 ---------------KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
+N C PN T NI+V A L+ G +EA+KL M +
Sbjct: 525 KGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNGT------- 577
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
PD+ T+NT++ + ++ + + M+ +GL
Sbjct: 578 -------PDLITYNTVISNITKAGKMEEALDLLRVMVSNGL 611
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 24/210 (11%)
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+ P+ + L+ L G+ +A++ +DM RG S Y L C A +A+
Sbjct: 158 FPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAM 217
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAY 240
+ +D++ +P +V+Y LI A + G++ A I + + + C P+ VT ++K+
Sbjct: 218 VLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSL 277
Query: 241 LEHGLFEEAMKLFQEMAEDS--------NHINREYDKKGLV---------------IPDI 277
++E +LF EMA + N I ++GLV IPDI
Sbjct: 278 CGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDI 337
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
T++++LD R DD + R+ +G
Sbjct: 338 VTYSSILDGLCDVGRVDDAVELLSRLKSYG 367
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 101/230 (43%), Gaps = 19/230 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + ++ +L Q G + V++ M + PDIV YN+++
Sbjct: 405 PDEVTFNTVIASLCQKGLVDRAIKVVEQMS---------------ENGCNPDIVTYNSII 449
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + + A +L L+ G KP T+ +++ + + ++ + + S P
Sbjct: 450 DGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCP 509
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+A + ++ +L ++G +A+ ++ M G + + + Y + L AGK +EAL
Sbjct: 510 PDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKL 569
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+ + P +++Y +I +G ++ A + M N SP+ +T
Sbjct: 570 LSGM--TNGTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTIT 617
>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
Length = 648
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/348 (20%), Positives = 160/348 (45%), Gaps = 31/348 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT+ + ++ G + E ++D M + ++ PD+V + ++
Sbjct: 167 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQR---------------PDLVTVSTLI 211
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + + A ++ ++ + G +P TYG V+ + G L + FRK+++ I
Sbjct: 212 NGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIK 271
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y +++++L ++G D+A+S +ME +GI Y L LC+ GK ++
Sbjct: 272 ASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKM 331
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ ++ P VV+++ LI + G + A ++N+M +P+ +T N ++ + +
Sbjct: 332 LREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCK 391
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
EA ++F M PDI T++ ++++ KR DD +++
Sbjct: 392 ENCLHEANQMFDLMVSKGCE------------PDIVTYSILINSYCKAKRVDDGMRLFRE 439
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
+ GL N + ++L ++GK+ + ++ + R PP+++
Sbjct: 440 ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM--VSRGVPPSVV 485
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 120/254 (47%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT+ Y S+ + + E + D M S EPDIV Y+ ++
Sbjct: 377 PDTITYNSLIDGFCKENCLHEANQMFDLMVS---------------KGCEPDIVTYSILI 421
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N+ + K+ + + +++ +G P+ TY ++ GK N E F++ V +
Sbjct: 422 NSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVP 481
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y +L++ L G+ ++A+ E M++ + +Y + +C+A K ++A
Sbjct: 482 PSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSL 541
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ KP VV+Y +I G++ A +F +MK + C+P+ T NI+++A+L
Sbjct: 542 FCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLG 601
Query: 243 HGLFEEAMKLFQEM 256
+++L +EM
Sbjct: 602 GSGLISSVELIEEM 615
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 140/309 (45%), Gaps = 23/309 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P + +N + +A R KQ++ + ++ G + Y + + + C K L++ F
Sbjct: 97 PTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHD--MYTMTIMINCYCRKKKLLFAF 154
Query: 115 F---RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
R + Y P+ + + LVN EG+ EAV+ V+ M L L
Sbjct: 155 SVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGL 214
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C G+ EAL+ +D++ + +P V+Y ++ SGN A +F +M+ ++
Sbjct: 215 CLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASV 274
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
V +I++ + + G F++A+ LF EM + KG + D+ T+++++ +
Sbjct: 275 VQYSIVIDSLCKDGSFDDALSLFNEM-----------EMKG-IKADVVTYSSLIGGLCND 322
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLARA---DRITP 346
+WDD + + M+ + + +I + GK +E E+ E + R D IT
Sbjct: 323 GKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITY 382
Query: 347 PALIKERFC 355
+LI + FC
Sbjct: 383 NSLI-DGFC 390
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 112/272 (41%), Gaps = 55/272 (20%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE- 113
PD+V ++A+++ V+ + A + ++ +G P TY +++ K N ++E
Sbjct: 342 PDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID---GFCKENCLHEA 398
Query: 114 ---FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
F V K P+ + Y +L+N+ + + D+ + ++ +G++ + Y L
Sbjct: 399 NQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLG 458
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN------ 224
C +GK A ++ P VV+Y L+ D+G + A IF +M+
Sbjct: 459 FCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLG 518
Query: 225 -----------------------FCS-------PNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
FCS P++VT N+M+ + G EA LF+
Sbjct: 519 IGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFR 578
Query: 255 EMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+M ED PD +T+N ++ A
Sbjct: 579 KMKEDG------------CTPDDFTYNILIRA 598
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 1/172 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P+ + YN ++ + + A + Q++ +G PS TYG++++ + G+ N
Sbjct: 445 LIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKAL 504
Query: 113 EFFRKVQKSYIPNALA-YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F K+QKS + + Y ++++ + K D+A S + +G+ Y + L
Sbjct: 505 EIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGL 564
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
C G EA M K+ + P +Y LI+A L + ++ + +MK
Sbjct: 565 CKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMK 616
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 28/181 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHI---KELFDVIDSMRSLPKKKFKTGTL--------------- 46
P+T+ Y ++ + Q+G + KELF + S R +P G L
Sbjct: 447 PNTITYNTLVLGFCQSGKLNAAKELFQEMVS-RGVPPSVVTYGILLDGLCDNGELNKALE 505
Query: 47 ---ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
+ R+ I +YN +++ + + A+ + L +G KP TY +++ +
Sbjct: 506 IFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLC 565
Query: 104 ACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNT-LWREGKTDEAVSAVEDMERRGIVGSA 161
G + FRK+++ P+ Y +L+ L G +S+VE +E + G +
Sbjct: 566 KKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSG----LISSVELIEEMKVCGFS 621
Query: 162 A 162
A
Sbjct: 622 A 622
>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22470, mitochondrial; Flags: Precursor
gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 619
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/348 (20%), Positives = 160/348 (45%), Gaps = 31/348 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT+ + ++ G + E ++D M + ++ PD+V + ++
Sbjct: 138 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQR---------------PDLVTVSTLI 182
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + + A ++ ++ + G +P TYG V+ + G L + FRK+++ I
Sbjct: 183 NGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIK 242
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y +++++L ++G D+A+S +ME +GI Y L LC+ GK ++
Sbjct: 243 ASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKM 302
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ ++ P VV+++ LI + G + A ++N+M +P+ +T N ++ + +
Sbjct: 303 LREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCK 362
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
EA ++F M PDI T++ ++++ KR DD +++
Sbjct: 363 ENCLHEANQMFDLMVSKGCE------------PDIVTYSILINSYCKAKRVDDGMRLFRE 410
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
+ GL N + ++L ++GK+ + ++ + R PP+++
Sbjct: 411 ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM--VSRGVPPSVV 456
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 120/254 (47%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT+ Y S+ + + E + D M S EPDIV Y+ ++
Sbjct: 348 PDTITYNSLIDGFCKENCLHEANQMFDLMVS---------------KGCEPDIVTYSILI 392
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N+ + K+ + + +++ +G P+ TY ++ GK N E F++ V +
Sbjct: 393 NSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVP 452
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y +L++ L G+ ++A+ E M++ + +Y + +C+A K ++A
Sbjct: 453 PSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSL 512
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ KP VV+Y +I G++ A +F +MK + C+P+ T NI+++A+L
Sbjct: 513 FCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLG 572
Query: 243 HGLFEEAMKLFQEM 256
+++L +EM
Sbjct: 573 GSGLISSVELIEEM 586
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 140/309 (45%), Gaps = 23/309 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P + +N + +A R KQ++ + ++ G + Y + + + C K L++ F
Sbjct: 68 PTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHD--MYTMTIMINCYCRKKKLLFAF 125
Query: 115 F---RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
R + Y P+ + + LVN EG+ EAV+ V+ M L L
Sbjct: 126 SVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGL 185
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C G+ EAL+ +D++ + +P V+Y ++ SGN A +F +M+ ++
Sbjct: 186 CLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASV 245
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
V +I++ + + G F++A+ LF EM + KG + D+ T+++++ +
Sbjct: 246 VQYSIVIDSLCKDGSFDDALSLFNEM-----------EMKG-IKADVVTYSSLIGGLCND 293
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLARA---DRITP 346
+WDD + + M+ + + +I + GK +E E+ E + R D IT
Sbjct: 294 GKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITY 353
Query: 347 PALIKERFC 355
+LI + FC
Sbjct: 354 NSLI-DGFC 361
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 112/272 (41%), Gaps = 55/272 (20%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE- 113
PD+V ++A+++ V+ + A + ++ +G P TY +++ K N ++E
Sbjct: 313 PDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID---GFCKENCLHEA 369
Query: 114 ---FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
F V K P+ + Y +L+N+ + + D+ + ++ +G++ + Y L
Sbjct: 370 NQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLG 429
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN------ 224
C +GK A ++ P VV+Y L+ D+G + A IF +M+
Sbjct: 430 FCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLG 489
Query: 225 -----------------------FCS-------PNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
FCS P++VT N+M+ + G EA LF+
Sbjct: 490 IGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFR 549
Query: 255 EMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+M ED PD +T+N ++ A
Sbjct: 550 KMKEDG------------CTPDDFTYNILIRA 569
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 28/181 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHI---KELFDVIDSMRSLPKKKFKTGTL--------------- 46
P+T+ Y ++ + Q+G + KELF + S R +P G L
Sbjct: 418 PNTITYNTLVLGFCQSGKLNAAKELFQEMVS-RGVPPSVVTYGILLDGLCDNGELNKALE 476
Query: 47 ---ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
+ R+ I +YN +++ + + A+ + L +G KP TY +++ +
Sbjct: 477 IFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLC 536
Query: 104 ACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNT-LWREGKTDEAVSAVEDMERRGIVGSA 161
G + FRK+++ P+ Y +L+ L G +S+VE +E + G +
Sbjct: 537 KKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSG----LISSVELIEEMKVCGFS 592
Query: 162 A 162
A
Sbjct: 593 A 593
>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
Length = 631
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 142/306 (46%), Gaps = 29/306 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D Y + G+AG + +V +M+ K G + PD VVYN +++
Sbjct: 334 DVFTYSYLMDAFGKAGRAAKALEVFYNMQ-------KAGCM--------PDTVVYNVLIS 378
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIP 124
++ + + A +L+ + ++G P TY +V++V+ +CG+Y Y FF +++ + P
Sbjct: 379 CLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSP 438
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ + Y L+N L + +TDEA ++M+ + + L L AG+ E+AL Q
Sbjct: 439 DVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQS 498
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
++ K+ + P Y LI SG + +F M + C P+ +T I+V +
Sbjct: 499 ARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRR 558
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G AM+L QEM + + P + T+N ++ + + + +D ++K M
Sbjct: 559 GHTSMAMELLQEMVREGH------------TPALATYNVLIRSLSMAGQVEDAYTLFKEM 606
Query: 304 LHHGLH 309
+ G +
Sbjct: 607 IAKGFN 612
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 133/297 (44%), Gaps = 17/297 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+ YN ++ C + KQ E A + Q+ +Q G TY +M+ G+ E
Sbjct: 299 PDVFTYNLLIALC-KSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEV 357
Query: 115 FRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F +QK+ +P+ + Y VL++ L ++GK DEA+ +EDM R+GI+ Y + L S
Sbjct: 358 FYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSS 417
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVT 232
G+ E+A + + + P VV+Y L+ A +F++M+ N C P+L T
Sbjct: 418 CGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTT 477
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
++ + G E+A++ + + + P+ Y +N ++ +
Sbjct: 478 FGTLIDTLAKAGRMEDALEQSARLVKMGH------------APNSYIYNALISGFCRSGQ 525
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPAL 349
D +++ M+ ++ + ++L SR G + + + R PAL
Sbjct: 526 VDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGH--TPAL 580
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 110/253 (43%), Gaps = 28/253 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKE----------------------LFDVIDSMRSLPKKKFK 42
PDTV Y + LG+ G + E + DV+ S K
Sbjct: 368 PDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSF 427
Query: 43 TGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
G ++R + PD+V YN +LN + ++ + A + +++ P TT+G +++ +
Sbjct: 428 FGMMKRR--KHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTL 485
Query: 103 LACGKY-NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
G+ + + + R V+ + PN+ Y L++ R G+ D+ +DM +
Sbjct: 486 AKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDS 545
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L G A+ + ++ + + P + +Y LI++ +G +++A +F +
Sbjct: 546 ITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKE 605
Query: 222 M--KNFCSPNLVT 232
M K F +P++ T
Sbjct: 606 MIAKGF-NPDMQT 617
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 16/199 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ L + E D+ D M++ + PD+ + ++
Sbjct: 438 PDVVTYNTLLNGLKKLRRTDEACDLFDEMQA---------------NKCMPDLTTFGTLI 482
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + E A +L + G P++ Y ++ G+ + YE F+ ++ S
Sbjct: 483 DTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCF 542
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+++ Y +LV R G T A+ +++M R G + A Y L R L AG+ E+A
Sbjct: 543 PDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTL 602
Query: 184 MDKICKVANKPLVVSYTGL 202
++ P + +Y+ L
Sbjct: 603 FKEMIAKGFNPDMQTYSAL 621
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 137/335 (40%), Gaps = 34/335 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTVA+ + L + +++ + D MR E D PD+V YN ++
Sbjct: 87 PDTVAFTAAMHWLCEVRRVEQAMTLFDDMR------------ETCD--CAPDVVAYNTLI 132
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
+ + A + ++LKQ+G KP+A ++ ++ + + F+++ + +
Sbjct: 133 AGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGL 192
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+ L++ R G +A + M A Y L C AG+ E
Sbjct: 193 KADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCRAGQMHEVAS 252
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQMKNFCSPNLVTCNIMVKAYL 241
M+ V+Y +IQ + G + A +F + M P++ T N+++ A
Sbjct: 253 FMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYNLLI-ALC 311
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ EEA+ LFQE ++G V+ D++T++ ++DA R V+
Sbjct: 312 KSKQLEEALTLFQEA------------EQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFY 359
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKV----ELLE 332
M G + + +I + GKV ELLE
Sbjct: 360 NMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLE 394
>gi|413938248|gb|AFW72799.1| hypothetical protein ZEAMMB73_717335 [Zea mays]
Length = 501
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 135/275 (49%), Gaps = 20/275 (7%)
Query: 38 KKKFKTGTLER-WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG 96
++ K +L R + R PD V YN + + R K A +L+Q+ + G P+ TY
Sbjct: 189 RRASKAASLVRALEQRFPPDAVTYNTLADGWCRVKDTSRALDILRQMVESGIAPTKATYN 248
Query: 97 LVMEVMLACGKYNLVYEFFRKVQK------SYIPNALAYKVLVNTLWREGKTDEAVSAVE 150
++++ G+ ++FF ++++ + P+ ++Y +++ L G+ D+A +
Sbjct: 249 IILKGFFRSGQLQHAWDFFLQMKRRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARKVFD 308
Query: 151 DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG 210
+M G S A Y L + C G E+A+ D + + P VV+YT LI+ +G
Sbjct: 309 EMSIEGCKPSTATYNALIQVTCKKGNLEDAVAVFDDMVRKGYIPNVVTYTVLIRGLCHAG 368
Query: 211 NIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
+ A + ++MK+ C PN+ T N++++ LE G E+ + LF+ M++
Sbjct: 369 KVVRAMKLLDRMKSEGCEPNVQTYNVLIRYSLEEGEIEKGLDLFETMSKGEE-------- 420
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
+P+ T+N ++ A KR +D+ V RM+
Sbjct: 421 ---CLPNQDTYNIIISAMFVRKRAEDMA-VAARMV 451
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 149/310 (48%), Gaps = 29/310 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD++ + ++ LG+AG + + +++D M+ ER ++P +V YNA++
Sbjct: 217 PDSITFTALMDALGKAGRVDDALELLDEMK------------ERG---VKPGVVTYNALI 261
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ A+ +L ++K+ G KP TY ++ ++ + + + +K++K P
Sbjct: 262 AGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCP 321
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y L+N L + G ++A + M+ +G Y L L A + E A +
Sbjct: 322 PDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVL 381
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+++ V +P + +Y +I +G + +A +F++M+ SP+++T N + +
Sbjct: 382 FEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGR 441
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G F+EA K+F++M E ++PD+ T++ +L + K DD + K
Sbjct: 442 GGRFKEARKIFEDMKESG------------LLPDVATYDALLLGLSKTKEVDDACGLLKE 489
Query: 303 MLHHGLHFNA 312
++ G F++
Sbjct: 490 LIEQGCAFDS 499
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 156/336 (46%), Gaps = 29/336 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y ++ LG+AG E ++ MR D PD+ YN ++
Sbjct: 77 PNLWTYNTLVDCLGKAGQFDEALRLLAEMR---------------DNGCVPDVRTYNCLI 121
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + + AF + +++++G P TY ++ + G+ E ++++ P
Sbjct: 122 STLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCP 181
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y L+ L ++G+T +A ++M+RRG + + L L AG+ ++AL
Sbjct: 182 PDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALEL 241
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+D++ + KP VV+Y LI G++ A + ++MK N C P++VT + ++ ++
Sbjct: 242 LDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIK 301
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+EA ++ ++M +K+G PD T+NT+++ +D ++ R
Sbjct: 302 ASQLDEACQVLKKM-----------EKEG-CPPDTITYNTLINGLGKAGLLNDAGRLFDR 349
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
M G + + + +I +A +VE + +E +
Sbjct: 350 MKSKGCNPDVVTYSTLITALGKAARVESACVLFEEM 385
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 147/330 (44%), Gaps = 35/330 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y S+ LG+ G + F + M+ +K PD + + A++
Sbjct: 182 PDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRK---------------PDSITFTALM 226
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK----YNLVYEFFRKVQK 120
+A + + + A +L ++K++G KP TY ++ G YNL+ E R K
Sbjct: 227 DALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCK 286
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
P+ + Y L+ L + + DEA ++ ME+ G Y L L AG +A
Sbjct: 287 ---PDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDA 343
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
D++ P VV+Y+ LI A + +++A +F +M++ P+L T ++
Sbjct: 344 GRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITV 403
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ G ++A +LF EM KGL PD+ T+N L++ R+ + +
Sbjct: 404 LGKAGQVDDADRLFSEMR-----------GKGLS-PDVITYNAFLNSLGRGGRFKEARKI 451
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++ M GL + + ++L S+ +V+
Sbjct: 452 FEDMKESGLLPDVATYDALLLGLSKTKEVD 481
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/347 (21%), Positives = 155/347 (44%), Gaps = 40/347 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y S+ L +AG +E + + +++ +W PD+V Y+ ++
Sbjct: 7 PNVVTYNSLLNALAKAGQCEEAQLLFEELKA-----------AKW----TPDVVSYSCLI 51
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-I 123
N+ R +WE A V+ +++ +G KP+ TY +++ + G+++ +++ + +
Sbjct: 52 NSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCV 111
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y L++TL + G+ EA + +M RG V Y L L G+ ++A+
Sbjct: 112 PDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMEL 171
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLE 242
++++ + P V++Y+ LI G A +F +MK P+ +T ++ A +
Sbjct: 172 LEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGK 231
Query: 243 HGLFEEAMKLFQEMAEDS--------NHINREYDKKGLVI---------------PDIYT 279
G ++A++L EM E N + + K G ++ PD+ T
Sbjct: 232 AGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVT 291
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
++ ++ + D+ V K+M G + + +I +AG
Sbjct: 292 YSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAG 338
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 28/225 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y SI LG+AG + + + MR L PD++ YNA L
Sbjct: 392 PDLFTYCSIITVLGKAGQVDDADRLFSEMRG---------------KGLSPDVITYNAFL 436
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM-------EVMLACGKYNLVYEFFRK 117
N+ R +++ A + + +K+ G P TY ++ EV ACG L+ E
Sbjct: 437 NSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACG---LLKEL--- 490
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+++ ++L + + L G DEA ++ +G+ A+ Y L L AG+
Sbjct: 491 IEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRV 550
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
EA ++ + + KP +VSY+ LI A +G I A + +M
Sbjct: 551 SEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEM 595
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 130/325 (40%), Gaps = 64/325 (19%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V YN++LNA + Q E A + ++LK
Sbjct: 7 PNVVTYNSLLNALAKAGQCEEAQLLFEELKAA---------------------------- 38
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ P+ ++Y L+N+L R GK + A+ V +M+ +G + Y L CL A
Sbjct: 39 ------KWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKA 92
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTC 233
G+ +EAL + ++ P V +Y LI +G + A +F +M+ C P+ T
Sbjct: 93 GQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTY 152
Query: 234 NIMVKAYLEHGLFEEAMKLFQEM-------------------AEDSNHIN-----REYDK 269
N ++ + G ++AM+L +EM +D + +E +
Sbjct: 153 NSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKR 212
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV- 328
+G PD TF ++DA R DD + M G+ + +I + G +
Sbjct: 213 RGRK-PDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLV 271
Query: 329 ---ELLEITWEHLARADRITPPALI 350
LL+ + + D +T LI
Sbjct: 272 EAYNLLDEMKRNGCKPDVVTYSCLI 296
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 96/207 (46%), Gaps = 16/207 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y + +LG+ G KE + + M+ ++G L PD+ Y+A+L
Sbjct: 427 PDVITYNAFLNSLGRGGRFKEARKIFEDMK-------ESGLL--------PDVATYDALL 471
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ K+ + A +L++L +QG + + +E++ + G + +E + K
Sbjct: 472 LGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLW 531
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P A +Y L++ L + G+ EA + +ED++ +G Y L L G+ + A
Sbjct: 532 PGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFEL 591
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSG 210
++++ K K SY+ L++ D G
Sbjct: 592 LEEMSKRGLKLSPRSYSNLVRKLQDWG 618
Score = 41.2 bits (95), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 25/131 (19%)
Query: 222 MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA------------------------ 257
MK F SPN+VT N ++ A + G EEA LF+E+
Sbjct: 1 MKGFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKW 60
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
E + + E KG P+++T+NT++D ++D+ + M +G + + +
Sbjct: 61 EAALEVVAEMQAKG-CKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNC 119
Query: 318 MILDASRAGKV 328
+I +AG++
Sbjct: 120 LISTLGKAGRL 130
>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 732
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 152/354 (42%), Gaps = 37/354 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTLERWDPRLEPDIVVYNA 62
PD+ Y S G A + +++ SM R P PD++ Y++
Sbjct: 184 PDSQNYSSAIAACGNARQWERAVELLASMAARGTP-----------------PDVLTYSS 226
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-S 121
+ AC + +W+ A +L+ +K QG KP+ Y + G++ + +++
Sbjct: 227 AIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVG 286
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
P+ + Y +++ + G+ + A + +M +G+V + Y + G+ EEA+
Sbjct: 287 LAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAV 346
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAY 240
+ ++ + P V++Y+ I AC G + A + +M +PN ++ I++ A
Sbjct: 347 ALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISAC 406
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ G + EA+ L QEM V PD+ ++ +DACA RW+ +
Sbjct: 407 AKRGRWREAIDLLQEMQAHG------------VPPDVINYSAAIDACAQASRWEQALWLL 454
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGK----VELLEITWEHLARADRITPPALI 350
+ M GL N + I ++ G+ VELL H D IT A+I
Sbjct: 455 REMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVI 508
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 143/300 (47%), Gaps = 28/300 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD++ Y+ V++AC +R QWE AF +L ++ +G + TY +V+ G++
Sbjct: 287 LAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAV 346
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
R++Q++ + P+ + Y ++ ++G+ +EAV + +M G+ +A Y +
Sbjct: 347 ALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISAC 406
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
G+ EA+ + ++ P V++Y+ I AC + + A ++ +M +PN+
Sbjct: 407 AKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNV 466
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMA------------------------EDSNHINRE 266
++ N + A + G + A++L +EM E++ + RE
Sbjct: 467 ISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEALDLFRE 526
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
++G + PD+ + NT ++ACA W++ V M GL +A + R +DA G
Sbjct: 527 MQRQG-ITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISY-RTAIDACAKG 584
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 131/262 (50%), Gaps = 14/262 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PD++ Y++ ++AC ++ QWE A +L+++ +G P+A +YG+V+ G++
Sbjct: 357 VAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWREAI 416
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +++Q + P+ + Y ++ + + ++A+ + +M G+ + Y
Sbjct: 417 DLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDAC 476
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
G+ + A+ + ++ P V++Y+ +I +C + A +F +M + +P++
Sbjct: 477 AKTGRSKIAVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDV 536
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
V+CN + A + G +EEA+ + EM GLV PD ++ T +DACA
Sbjct: 537 VSCNTAINACAQGGWWEEALDVLGEM-----------PTMGLV-PDAISYRTAIDACAKG 584
Query: 291 KRWDDLELVYKRMLHHGLHFNA 312
RW ++ + + M GL +A
Sbjct: 585 DRWKEIIDLLREMSTVGLTPDA 606
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/315 (20%), Positives = 136/315 (43%), Gaps = 34/315 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ ++Y + + G +E D++ M++ + PD++ Y+A +
Sbjct: 394 PNAISYGIVISACAKRGRWREAIDLLQEMQAH---------------GVPPDVINYSAAI 438
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+AC + +WE A W+L+++ G P+ +Y ++ G+ + E R++
Sbjct: 439 DACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLA 498
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y ++ + + +EA+ +M+R+GI G EEAL
Sbjct: 499 PDVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDV 558
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ ++ + P +SY I AC + + +M +P+ ++ + A
Sbjct: 559 LGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSV 618
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
GL++EA+ L ++M + PD+ T+N+ ++ACA RW + ++ ++
Sbjct: 619 DGLWKEALVLLRDMLAVG------------LSPDVVTYNSAINACAKGGRWKEATVLLRQ 666
Query: 303 MLHHGL-----HFNA 312
M GL FNA
Sbjct: 667 MPTFGLAPDVNSFNA 681
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 133/298 (44%), Gaps = 24/298 (8%)
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG---KYNLVYEFFRKV 118
A L + W A VL ++++QG KP + Y + ACG ++ E +
Sbjct: 156 ATLREAKQYGDWRKALDVLDRMQEQGVKPDSQNYS---SAIAACGNARQWERAVELLASM 212
Query: 119 Q-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+ P+ L Y + + + EAV + M+ +G+ + +Y G+
Sbjct: 213 AARGTPPDVLTYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQW 272
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIM 236
E A+ + ++ V P V++Y+ +I AC G + A + +M N++T +I+
Sbjct: 273 ETAVDLLKEMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIV 332
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ A + G +EEA+ L +EM E+ V PD+ T+++ + ACA + +W++
Sbjct: 333 IGACAKWGQWEEAVALLREMQENG------------VAPDVITYSSTISACAKKGQWEEA 380
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEITWEHLARADRITPPALI 350
+ + M G+ NA + +I ++ G+ ++LL+ H D I A I
Sbjct: 381 VGLLREMPMEGVTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAI 438
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 97/207 (46%), Gaps = 4/207 (1%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD++ Y+AV+ +C +QWE A + +++++QG P + + G +
Sbjct: 497 LAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEAL 556
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ ++ +P+A++Y+ ++ + + E + + +M G+ A + Y A
Sbjct: 557 DVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDA-ISYRFAMSA 615
Query: 172 CSA-GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPN 229
CS G +EAL+ + + V P VV+Y I AC G + A + QM F +P+
Sbjct: 616 CSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPD 675
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+ + N + A + A+++ EM
Sbjct: 676 VNSFNAAIDACGNGDQWGTAVEVLFEM 702
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 93/230 (40%), Gaps = 17/230 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ + +E D+ M+ + G + PD+V N +
Sbjct: 499 PDVITYSAVIASCAMGRQWEEALDLFREMQ-------RQG--------ITPDVVSCNTAI 543
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
NAC + WE A VL ++ G P A +Y ++ ++ + + R++
Sbjct: 544 NACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLT 603
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+A++Y+ ++ +G EA+ + DM G+ Y G+ +EA +
Sbjct: 604 PDAISYRFAMSACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVL 663
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
+ ++ P V S+ I AC + A + +M+ SPN T
Sbjct: 664 LRQMPTFGLAPDVNSFNAAIDACGNGDQWGTAVEVLFEMRALGVSPNEAT 713
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 27/168 (16%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSL---PKK---KFKTGTLE---RWDP 51
M PD ++YR+ + KE+ D++ M ++ P +F W
Sbjct: 565 MGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLWKE 624
Query: 52 R-----------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
L PD+V YN+ +NAC + +W+ A +L+Q+ G P ++ ++
Sbjct: 625 ALVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPDVNSFNAAID 684
Query: 101 VMLACGKYN----LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDE 144
ACG + V F PN Y + R G+ D+
Sbjct: 685 ---ACGNGDQWGTAVEVLFEMRALGVSPNEATYLTAMYACKRCGEKDD 729
>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
[Arabidopsis thaliana]
Length = 602
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 133/288 (46%), Gaps = 14/288 (4%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPD +N ++N + A ++ ++ + G +P TY ++ + G +L ++
Sbjct: 155 EPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFD 214
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
RK+++ + + Y ++++L R+G D A+S ++ME +GI S Y L R LC
Sbjct: 215 MLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC 274
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
AGK + + + + P V+++ L+ + G +Q A ++ +M SPN++
Sbjct: 275 KAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNII 334
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ Y EA + M + PDI TF +++ K
Sbjct: 335 TYNTLMDGYCMQNRLSEANNMLDLMVRNKCS------------PDIVTFTSLIKGYCMVK 382
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
R DD V++ + GL NA + ++ ++GK++L E ++ +
Sbjct: 383 RVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMV 430
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 103/207 (49%), Gaps = 2/207 (0%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
+ PDIV + +++ K+ + V + + ++G +A TY ++++ GK L
Sbjct: 363 KCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLA 422
Query: 112 YEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
E F++ V +P+ + Y +L++ L GK ++A+ ED+++ + +Y +
Sbjct: 423 EELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG 482
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
+C GK E+A + KP V++YT +I G++ A + +M ++ +PN
Sbjct: 483 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 542
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEM 256
T N +++A+L G + KL +EM
Sbjct: 543 DCTYNTLIRAHLRDGDLTASAKLIEEM 569
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 116/267 (43%), Gaps = 14/267 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E R P +V ++ +A R KQ+ +QL+ G + T +++ C
Sbjct: 78 EMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCC 137
Query: 107 KYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K Y KV K Y P+ + L+N L EGK +AV V+ M G Y
Sbjct: 138 KTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYN 197
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN- 224
+ +C +G A + K+ + K V +Y+ +I + G I A +F +M+
Sbjct: 198 SIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETK 257
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
++VT N +V+ + G + + L ++M ++RE ++P++ TFN +L
Sbjct: 258 GIKSSVVTYNSLVRGLCKAGKWNDGALLLKDM------VSRE------IVPNVITFNVLL 305
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFN 311
D E + + +YK M+ G+ N
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPN 332
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 122/279 (43%), Gaps = 15/279 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P+I+ YN +++ + + A +L + + P T+ +++ + +
Sbjct: 329 ISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGM 388
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ FR + K + NA+ Y +LV + GK A ++M G++ Y L L
Sbjct: 389 KVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGL 448
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C GK E+AL + + K +V YT +I+ G +++A +F + PN+
Sbjct: 449 CDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNV 508
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T +M+ + G EA L ++M ED N P+ T+NT++ A +
Sbjct: 509 MTYTVMISGLCKKGSLSEANILLRKMEEDGNA------------PNDCTYNTLIRAHLRD 556
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + M G +A ++M++D +G+++
Sbjct: 557 GDLTASAKLIEEMKSCGFSADAS-SIKMVIDMLLSGELD 594
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/274 (19%), Positives = 121/274 (44%), Gaps = 22/274 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL---------------- 46
PD V Y SI + ++G FD++ M R++ F T+
Sbjct: 191 PDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISL 250
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E ++ +V YN+++ + +W +L+ + + P+ T+ ++++V +
Sbjct: 251 FKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVK 310
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK E +++ + + PN + Y L++ + + EA + ++ M R
Sbjct: 311 EGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVT 370
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
+ L + C + ++ + I K V+Y+ L+Q SG I+ A +F +M
Sbjct: 371 FTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMV 430
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+ P+++T I++ ++G E+A+++F+++
Sbjct: 431 SHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 464
>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Brachypodium distachyon]
Length = 938
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 158/338 (46%), Gaps = 35/338 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V Y S+ L +AG + D++D+M+ + G +EP++V Y +
Sbjct: 208 DVVGYNSLVAGLCRAGEVDAARDMVDTMK-------RDG--------VEPNVVTYTMFIV 252
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIP 124
RR + AF + +++ ++G P T ++ + G+++ Y FR+++K P
Sbjct: 253 EYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAP 312
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N + Y +L++TL + + +E++S + ++ RG+V +Y L LC GK +EA
Sbjct: 313 NHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMF 372
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
+ P V+YT LI A +GN+ A + ++M + SPN+VT + ++ ++
Sbjct: 373 RHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKR 432
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA---CAAEKRWDDLELVY 300
G +A +EM E R D P++ T+ T++D C ++ D VY
Sbjct: 433 GWVGKATDYMREMKE------RGID------PNVVTYGTVIDGSFKCLGQEAALD---VY 477
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
ML G+ N ++ + GK+E E + +
Sbjct: 478 HEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREM 515
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 81/357 (22%), Positives = 151/357 (42%), Gaps = 35/357 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V + SI L + G + + D + M+ ER ++P++V Y V+
Sbjct: 417 PNVVTFSSIINGLVKRGWVGKATDYMREMK------------ERG---IDPNVVTYGTVI 461
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + E A V ++ +G + + ++ + GK FR++ ++ +
Sbjct: 462 DGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVL 521
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y L++ L++ G A +++ + ++ A +Y CLC GK +EA
Sbjct: 522 LDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESF 581
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
++++ KP V+Y +I A G A + N MK + PNL+T + ++ E
Sbjct: 582 LEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFE 641
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G E+A L EM+ P T +L AC+ +R D + +++
Sbjct: 642 AGAVEKAKYLLNEMSSSG------------FSPTSLTHRRVLQACSQGRRSDLILEIHEW 689
Query: 303 MLHHGL-----HFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERF 354
M++ GL +N + +R V L E++ +A D IT ALI F
Sbjct: 690 MMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIA-PDTITFNALILGHF 745
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 117/276 (42%), Gaps = 16/276 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D V Y +++ + AF V Q+L ++ P A Y + + + GK F
Sbjct: 523 DHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFL 582
Query: 116 RKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
++Q + + P+ + Y ++ REGKT +A+ + M+R I + Y L L A
Sbjct: 583 EEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEA 642
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--FCSPNLVT 232
G E+A ++++ P +++ ++QAC I M N C+ ++
Sbjct: 643 GAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCA-DITV 701
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N +V+ +G+ +AM + +EM+ + PD TFN ++
Sbjct: 702 YNTLVRVLCYNGMTRKAMVVLEEMSGRG------------IAPDTITFNALILGHFKSGH 749
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
D+ Y +ML+HG+ N ++ AG++
Sbjct: 750 LDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRI 785
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 131/324 (40%), Gaps = 29/324 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y L G KE ++ M+S TG L+PD V YN ++
Sbjct: 557 PDAVVYNVFINCLCMLGKSKEAESFLEEMQS-------TG--------LKPDQVTYNTMI 601
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YI 123
A R + A +L +K+ KP+ TY ++ + G ++ S +
Sbjct: 602 AAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFS 661
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P +L ++ ++ + ++D + E M G+ +Y L R LC G +A++
Sbjct: 662 PTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVV 721
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++++ P +++ LI SG++ NA ++QM + SPN+ T N ++
Sbjct: 722 LEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLES 781
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G E+ + EM KK + P T++ ++ + + +Y
Sbjct: 782 AGRIGESDMVLNEM------------KKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCE 829
Query: 303 MLHHGLHFNAKRHLRMILDASRAG 326
M+ G + +I D S+ G
Sbjct: 830 MVGKGFLPKVSTYNALISDFSKVG 853
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 71/352 (20%), Positives = 136/352 (38%), Gaps = 67/352 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y + L +AG++ V+ M + + P++V +++++
Sbjct: 382 PNGVTYTVLIDALCKAGNVDGAEQVLSEME---------------EKSISPNVVTFSSII 426
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC-GKYNLVYEFFRKVQKSYI 123
N V+R A ++++K++G P+ TYG V++ C G+ + + + +
Sbjct: 427 NGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVE 486
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N LVN L + GK ++A + +M RG++
Sbjct: 487 VNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVL------------------------- 521
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
+D V+YT LI +GN+ A + ++ KN P+ V N+ +
Sbjct: 522 LDH----------VNYTTLIDGLFKTGNLPAAFKVGQELTEKNLL-PDAVVYNVFINCLC 570
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G +EA +EM + PD T+NTM+ A + E + +
Sbjct: 571 MLGKSKEAESFLEEMQSTG------------LKPDQVTYNTMIAAQSREGKTAKALKLLN 618
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKER 353
M + N + +I+ AG VE + ++ + +P +L R
Sbjct: 619 GMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSG-FSPTSLTHRR 669
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 123/304 (40%), Gaps = 42/304 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTL------------ERWDPR 52
P+ + Y ++ V L +AG +++ +++ M S F +L R D
Sbjct: 627 PNLITYSTLIVGLFEAGAVEKAKYLLNEMSS---SGFSPTSLTHRRVLQACSQGRRSDLI 683
Query: 53 LE-----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
LE DI VYN ++ A VL+++ +G P T+ ++
Sbjct: 684 LEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILG 743
Query: 102 MLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
G + + + ++ I PN + L+ L G+ E+ + +M++RGI S
Sbjct: 744 HFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPS 803
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANK---PLVVSYTGLIQACLDSGNIQNAAY 217
L YD+ + GK + + C++ K P V +Y LI G + A
Sbjct: 804 N-LTYDI--LVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKE 860
Query: 218 IFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYD 268
+FN+M+N P T +I+V + + E K ++M E + I+R +
Sbjct: 861 LFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSPSKGTLSSISRAFS 920
Query: 269 KKGL 272
K G+
Sbjct: 921 KPGM 924
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 101/223 (45%), Gaps = 14/223 (6%)
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ + + LV+ + G + A + E M+ +G+ Y L LC AG+ + A +
Sbjct: 173 DVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMV 232
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
D + + +P VV+YT I + +A ++ +M + P++VT + +V +
Sbjct: 233 DTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKD 292
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G F EA LF+EM +K G P+ T+ ++D A +R ++ + +
Sbjct: 293 GRFSEAYALFREM-----------EKIG-AAPNHVTYCMLIDTLAKAQRGNESLSLLGEV 340
Query: 304 LHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
+ G+ + + ++ + GK++ + + H A +D TP
Sbjct: 341 VSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRH-ALSDNHTP 382
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 81/222 (36%), Gaps = 51/222 (22%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT+ + ++ + ++GH+ F D M + P++ +N +L
Sbjct: 732 PDTITFNALILGHFKSGHLDNAFSTYDQM---------------LYHGISPNVATFNTLL 776
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGL-----------VMEVMLAC---GK--- 107
+ + VL ++K++G +PS TY + V V L C GK
Sbjct: 777 GGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFL 836
Query: 108 -----YNLVYEFFRKV--------------QKSYIPNALAYKVLVNTLWREGKTDEAVSA 148
YN + F KV + +P + Y +LV+ + E
Sbjct: 837 PKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEVRKF 896
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
++DM+ +G S ++R G EA + + KV
Sbjct: 897 LKDMKEKGFSPSKGTLSSISRAFSKPGMSWEARRLLKNLYKV 938
>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Brachypodium distachyon]
Length = 746
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 150/341 (43%), Gaps = 31/341 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y ++ L AG + + ++ M G + +N VL
Sbjct: 312 PDKFTYSTVVSALADAGRVDDAVALVHEM-------VVDGVVA---------AEAFNPVL 355
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YI 123
A +R GA + ++ +G PSA TY +++ +L CG+ R+++++ +
Sbjct: 356 GAMLRTGDVTGAAKLFSFMQLKGCAPSAATYNVLLHGLLLCGRAKAAMGVMRRMERAEVV 415
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y +V+ L R G+ ++A +E+M +G+V + ++ + C G+ + A
Sbjct: 416 PGVMTYGAVVDGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRV 475
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
D + KP VV Y+ +I G + A +F +M + C PN++T + MV+ Y +
Sbjct: 476 WDTMVAAGIKPNVVLYSAMIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQ 535
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +A+ +++M P+ T++ +++ R D +V+K
Sbjct: 536 IGDSSQALSFWEDMLRIG------------CTPNAVTYSVLINGLCNVGRSKDAMMVWKH 583
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVEL-LEITWEHLARAD 342
ML G + + MI +G V+ L + ++ LAR D
Sbjct: 584 MLGRGCVPDTIAYTSMIKGFCVSGMVDAGLRLFYDMLARGD 624
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 117/257 (45%), Gaps = 23/257 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS--LPKKKF----------KTGTLER---- 48
P + Y ++ L + G +++ VI+ MRS L +F K G ++R
Sbjct: 416 PGVMTYGAVVDGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRV 475
Query: 49 WDPR----LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
WD ++P++V+Y+A+++ R + A + +++ + P+ TY ++
Sbjct: 476 WDTMVAAGIKPNVVLYSAMIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQ 535
Query: 105 CGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + F+ + + PNA+ Y VL+N L G++ +A+ + M RG V
Sbjct: 536 IGDSSQALSFWEDMLRIGCTPNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRGCVPDTIA 595
Query: 164 YYDLARCLCSAGKCEEAL-MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y + + C +G + L + D + + P V+ Y L+ L + ++ A + NQM
Sbjct: 596 YTSMIKGFCVSGMVDAGLRLFYDMLARGDTHPDVICYNVLLDGLLRAKDLPRAMDLLNQM 655
Query: 223 -KNFCSPNLVTCNIMVK 238
C P+ VTCN ++
Sbjct: 656 LDQACDPDTVTCNTFLR 672
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 22/224 (9%)
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA-- 180
+P+ Y +V+ L G+ D+AV+ V +M G+V + A L L + A
Sbjct: 311 VPDKFTYSTVVSALADAGRVDDAVALVHEMVVDGVVAAEAFNPVLGAMLRTGDVTGAAKL 370
Query: 181 --LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
MQ+ K C P +Y L+ L G + A + +M+ P ++T +V
Sbjct: 371 FSFMQL-KGC----APSAATYNVLLHGLLLCGRAKAAMGVMRRMERAEVVPGVMTYGAVV 425
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ G E+A K+ +EM KGLV P+ + F+ ++ D
Sbjct: 426 DGLVRCGRLEDACKVIEEM-----------RSKGLV-PNEFVFSPVITGFCKLGEVDRAS 473
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
V+ M+ G+ N + MI +R GK+ E+ + + A
Sbjct: 474 RVWDTMVAAGIKPNVVLYSAMIDGLARCGKMTEAELLFREMIEA 517
>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
Length = 703
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 144/312 (46%), Gaps = 32/312 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ L + + D++D M P+ R++PD+V YNA+L
Sbjct: 191 PDRITYSTLMCGLAKQDRLDHALDLLDEM---PRS------------RVQPDVVCYNALL 235
Query: 65 NACVRRKQWEGAFWVLQQL-KQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSY 122
C + ++E V +L K G +P+ TY ++++ + G++ V E + R V +
Sbjct: 236 GGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNL 295
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ + Y +L++ L R G D A ++ + G+V AA+Y L + C AG+ +EA
Sbjct: 296 QPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWK 355
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--FCSPNLVTCNIMVKAY 240
D + L +Y +I+ DSG + A +++ ++ C P+ VT ++
Sbjct: 356 FWDSAGFAGLRNL-RTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGL 414
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
++G +A +F+E + D++++++M++ R D VY
Sbjct: 415 CQNGFANKAFTIFEEARVSGKQL------------DVFSYSSMINGLCNVGRLVDAVKVY 462
Query: 301 KRMLHHGLHFNA 312
++M G N+
Sbjct: 463 EKMDKDGCKPNS 474
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/373 (20%), Positives = 159/373 (42%), Gaps = 50/373 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTL-----------------E 47
PD V Y ++ +AG +++ V D + P + T E
Sbjct: 226 PDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGE 285
Query: 48 RWD----PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
W+ L+PD++ Y +++ R +GA V ++ + G A Y +++
Sbjct: 286 VWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFC 345
Query: 104 ACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERR-GIVGSAA 162
G+ ++F+ + + N Y +++ L+ G DEA+ + +E+ +
Sbjct: 346 QAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTV 405
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPL-VVSYTGLIQACLDSGNIQNAAYIFNQ 221
+ L LC G +A ++ +V+ K L V SY+ +I + G + +A ++ +
Sbjct: 406 TFGTLIHGLCQNGFANKAFTIFEE-ARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEK 464
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE---------------------- 258
M K+ C PN N ++ + + +A++++ +MA+
Sbjct: 465 MDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEK 524
Query: 259 --DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316
+++ + RE + G PDI T+ +++ ++K+ DD ++K++L+ GL + H
Sbjct: 525 YQEASSVAREMVENGFT-PDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHN 583
Query: 317 RMILDASRAGKVE 329
+I AGKV+
Sbjct: 584 ILIHGLCSAGKVD 596
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 133/309 (43%), Gaps = 35/309 (11%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTL-- 46
++ PDTV + ++ L Q G + F + + R S+ G L
Sbjct: 398 VACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVD 457
Query: 47 -----ERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
E+ D +P+ +YNA+++ + + A + ++ G P+ TY +++
Sbjct: 458 AVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLID 517
Query: 101 VMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+ KY R+ V+ + P+ Y L+ L+ + K D+A+S + + +G+
Sbjct: 518 GLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKV 577
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYI 218
++ L LCSAGK +EAL + + N P +V+Y L+ ++G I AA +
Sbjct: 578 DVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATL 637
Query: 219 FNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI 277
+ + ++ P++++ N +K E ++L E+ +IP +
Sbjct: 638 WTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRG------------IIPTV 685
Query: 278 YTFNTMLDA 286
T+N ++ A
Sbjct: 686 ITWNILVRA 694
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/282 (19%), Positives = 117/282 (41%), Gaps = 54/282 (19%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ--GQK--PSATTYGLVMEVMLACGKYNL 110
P I +NA+L+A VR +++ A L G++ P+ TY +V+ + A G +
Sbjct: 117 PGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDR 176
Query: 111 VYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
F +++ + P+ + Y L+ L ++ + D A+ +++M R +
Sbjct: 177 AVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRV------------ 224
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCS 227
+P VV Y L+ C +G + +++++
Sbjct: 225 -----------------------QPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGAR 261
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
PNL T N+M+ + G F+E ++++ M +N++ PD+ T+ ++
Sbjct: 262 PNLATYNVMLDGLCKFGRFKEVGEVWERMV--ANNLQ----------PDVITYGILIHGL 309
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
D VY ++ GL +A + ++ +AG+V+
Sbjct: 310 CRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQ 351
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 113/270 (41%), Gaps = 48/270 (17%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R+ P++ YN VL + R + A + L+++ P TY +M + + +
Sbjct: 153 RIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHA 212
Query: 112 YEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERR-GIVGSAALYYDLAR 169
+ ++ +S + P+ + Y L+ ++ G+ ++ + + + + G + A Y +
Sbjct: 213 LDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLD 272
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM------- 222
LC G+ +E +++ +P V++Y LI SG++ AA +++++
Sbjct: 273 GLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVI 332
Query: 223 ---------KNFCSP-------------------NLVTCNIMVKAYLEHGLFEEAMKLFQ 254
K FC NL T NIM+K + G+ +EA++L+
Sbjct: 333 DAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWD 392
Query: 255 EMAEDSNHINREYDKKGLVIPDIYTFNTML 284
+ +D IPD TF T++
Sbjct: 393 LLEKDVA-----------CIPDTVTFGTLI 411
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 74/161 (45%), Gaps = 2/161 (1%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDI Y +++ K+ + A + +Q+ +G K + +++ + + GK +
Sbjct: 542 PDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHV 601
Query: 115 FR--KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F K +K+ PN + Y L++ L+ G D+A + + G+ Y + LC
Sbjct: 602 FSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLC 661
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQ 213
S + E + +D++ P V+++ L++A + G IQ
Sbjct: 662 SCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYGPIQ 702
>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
Length = 1025
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/327 (22%), Positives = 157/327 (48%), Gaps = 27/327 (8%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEP--DIVVYN 61
Y D+ A ++ L ++GH++ ++ D +R L L P + + Y
Sbjct: 151 YFDSGALAALLKELNKSGHVRRAQELFDWLRGLDDSH-----------DLYPLCNTMTYT 199
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQK 120
+++ C ++Q A ++ +++ +G + + TY +M V + + +L + +R+ + +
Sbjct: 200 TMISQCGTQQQLRRALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAE 259
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
PN + Y L++ + G +EA+ ++ +ER+GI Y + +G+ +EA
Sbjct: 260 GCTPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEA 319
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
L +++ +P +YT LI A +G + A IF M + C N++T + ++ A
Sbjct: 320 LRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISA 379
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ G +E A++LF+EM + P++ T+N+++ ACA +W+ + +
Sbjct: 380 CEKAGRWELALELFREMHTEGCR------------PNVVTYNSLIAACAQGAQWEKAQEM 427
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAG 326
+++M H G +A +I RAG
Sbjct: 428 FEQMQHRGCKPDAVTFGGLIAAYDRAG 454
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 107/238 (44%), Gaps = 16/238 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V YN +++ + WE A VL L++QG P TY V+ +AC E
Sbjct: 263 PNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVI---IACNMSGQAQEA 319
Query: 115 FRKVQK----SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
R ++ P A Y L++ + G+ D A+ +DM RRG + Y L
Sbjct: 320 LRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISA 379
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPN 229
AG+ E AL ++ +P VV+Y LI AC + A +F QM++ C P+
Sbjct: 380 CEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQHRGCKPD 439
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMA-----EDS---NHINREYDKKGLVIPDIYT 279
VT ++ AY G + A+ F++M DS N I K GLV I+T
Sbjct: 440 AVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVGALWKTGLVWAQIFT 497
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 69/135 (51%), Gaps = 13/135 (9%)
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
V +Y+ L+ C+ + A ++ QM C+PNLVT N ++ Y + G +EEA+++
Sbjct: 230 VHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVLD 289
Query: 255 EMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKR 314
+ +++G + P+I T+NT++ AC + + +Y+RML G A
Sbjct: 290 AL-----------ERQG-IDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQPTATT 337
Query: 315 HLRMILDASRAGKVE 329
+ +I + G+++
Sbjct: 338 YTALISAYGKNGQLD 352
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
E +++ Y+++++AC + +WE A + +++ +G +P+ TY ++ ++ E
Sbjct: 367 ERNVITYSSLISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQE 426
Query: 114 FFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDME 153
F ++Q + P+A+ + L+ R G A++A E M+
Sbjct: 427 MFEQMQHRGCKPDAVTFGGLIAAYDRAGHWRRALTAFEQMK 467
>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12775, mitochondrial; Flags: Precursor
gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
multiple PPR PF|01535 repeats. EST gb|AI999079 comes
from this gene [Arabidopsis thaliana]
gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 644
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 163/345 (47%), Gaps = 32/345 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV + ++ L + E +++D M + K P ++ N ++
Sbjct: 156 PDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHK---------------PTLITLNTLV 200
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
N + A ++ ++ + G +P+ TYG V+ VM G+ L E RK+++ I
Sbjct: 201 NGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIK 260
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+A+ Y ++++ L ++G D A + +ME +G Y L C+AG+ ++
Sbjct: 261 LDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKL 320
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLE 242
+ + K P VV+++ LI + + G ++ A + + M+ +PN +T N ++ + +
Sbjct: 321 LRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCK 380
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYK 301
EEA+++ M I++ D PDI TFN +++ C A + D LEL ++
Sbjct: 381 ENRLEEAIQMVDLM------ISKGCD------PDIMTFNILINGYCKANRIDDGLEL-FR 427
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
M G+ N + ++ ++GK+E+ + ++ + + R+ P
Sbjct: 428 EMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMV-SRRVRP 471
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 138/313 (44%), Gaps = 21/313 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P ++ +N + +A + KQ+E + +Q++ +G S T +++ C K + +
Sbjct: 86 PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y P+ + + L+N L E + EA+ V+ M G + L LC
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
GK +A++ +D++ + +P V+Y ++ SG A + +M+ + V
Sbjct: 206 NGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+I++ + G + A LF EM + KG DI T+NT++ R
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEM-----------EIKGFK-ADIITYNTLIGGFCNAGR 313
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPA 348
WDD + + M+ + N +I + GK+ +LL+ + + IT +
Sbjct: 314 WDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNS 373
Query: 349 LIKERFC--NRLE 359
LI + FC NRLE
Sbjct: 374 LI-DGFCKENRLE 385
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 108/245 (44%), Gaps = 33/245 (13%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLE------------RWDP-- 51
D V Y I L + G + F++ + M K FK + RWD
Sbjct: 262 DAVKYSIIIDGLCKDGSLDNAFNLFNEMEI---KGFKADIITYNTLIGGFCNAGRWDDGA 318
Query: 52 ---------RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
++ P++V ++ ++++ V+ + A +L+++ Q+G P+ TY +++
Sbjct: 319 KLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLID-- 376
Query: 103 LACGKYNLVYEFFRKVQ----KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
K N + E + V K P+ + + +L+N + + D+ + +M RG++
Sbjct: 377 -GFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVI 435
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
+ Y L + C +GK E A ++ +P +VSY L+ D+G ++ A I
Sbjct: 436 ANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEI 495
Query: 219 FNQMK 223
F +++
Sbjct: 496 FGKIE 500
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/257 (19%), Positives = 119/257 (46%), Gaps = 23/257 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T+ Y S+ + ++E ++D M S +PDI+ +N ++
Sbjct: 366 PNTITYNSLIDGFCKENRLEEAIQMVDLMIS---------------KGCDPDIMTFNILI 410
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + + + + +++ +G + TY +++ GK + + F++ V +
Sbjct: 411 NGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVR 470
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++YK+L++ L G+ ++A+ +E+ + +Y + +C+A K ++A
Sbjct: 471 PDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDA--- 527
Query: 184 MDKICKVANKPLVV---SYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
D C + K + + +Y +I ++ A +F +M + +P+ +T NI+++A
Sbjct: 528 WDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRA 587
Query: 240 YLEHGLFEEAMKLFQEM 256
+L A +L +EM
Sbjct: 588 HLGDDDATTAAELIEEM 604
>gi|299471535|emb|CBN80021.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 607
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/351 (23%), Positives = 149/351 (42%), Gaps = 62/351 (17%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+ Y+AV++AC + QW+ A + L ++ +G P A +YG + G++ + +
Sbjct: 66 PDLSAYSAVIDACAKGGQWKMAVFFLMEMPTKGIAPDARSYGAAINACARGGRWKIALDL 125
Query: 115 FRK-VQKSYIPNALAYKVLVNTL-----W------------------------------R 138
R+ + + PN + Y +N+ W R
Sbjct: 126 LREMLARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKEMATVGLAPDVISYSSAISACGR 185
Query: 139 EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
G+ +EA+ EDM G+ Y + G+ +EA+ + KI V P V+S
Sbjct: 186 GGRWEEALELFEDMRTSGVAPDVITYGSAIAACANGGRWKEAVSLLRKIPTVGLTPNVIS 245
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y+ +I AC G + A + +MK +PN++T N + A + G ++EA+ L +EM
Sbjct: 246 YSSVITACAKEGQWKIALDLLREMKAMRLAPNIITYNAAIDACAKGGRWKEAIDLLREMP 305
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
+ PD+ ++++++DAC+ RW + + + M GL NA +
Sbjct: 306 TVG------------LPPDVVSYSSVIDACSKGDRWKEAIDILREMPTVGLSPNAISYNS 353
Query: 318 MILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAIS 368
I ++ G+ W+ R P A + +R Y SAI+
Sbjct: 354 AIDACAKGGQ-------WKEAKGLLREMPTAGVTQRVIG------YNSAIA 391
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 130/307 (42%), Gaps = 29/307 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y S + +AG + ++ M ++ L PD++ Y++ +
Sbjct: 136 PNVIIYNSAINSCAKAGQWEIAVSLVKEMATV---------------GLAPDVISYSSAI 180
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+AC R +WE A + + ++ G P TYG + G++ RK+
Sbjct: 181 SACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAACANGGRWKEAVSLLRKIPTVGLT 240
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN ++Y ++ +EG+ A+ + +M+ + + Y G+ +EA+
Sbjct: 241 PNVISYSSVITACAKEGQWKIALDLLREMKAMRLAPNIITYNAAIDACAKGGRWKEAIDL 300
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ ++ V P VVSY+ +I AC + A I +M SPN ++ N + A +
Sbjct: 301 LREMPTVGLPPDVVSYSSVIDACSKGDRWKEAIDILREMPTVGLSPNAISYNSAIDACAK 360
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G ++EA L +EM V + +N+ + ACA ++W + + +
Sbjct: 361 GGQWKEAKGLLREMPTAG------------VTQRVIGYNSAIAACAKGEQWKEALALLRE 408
Query: 303 MLHHGLH 309
M GLH
Sbjct: 409 MPTVGLH 415
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 155/346 (44%), Gaps = 34/346 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ ++Y S+ + G K D++ M+++ RL P+I+ YNA +
Sbjct: 241 PNVISYSSVITACAKEGQWKIALDLLREMKAM---------------RLAPNIITYNAAI 285
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+AC + +W+ A +L+++ G P +Y V++ ++ + R++ +
Sbjct: 286 DACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACSKGDRWKEAIDILREMPTVGLS 345
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG-KCEEALM 182
PNA++Y ++ + G+ EA + +M G+ + Y+ A C+ G + +EAL
Sbjct: 346 PNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVT-QRVIGYNSAIAACAKGEQWKEALA 404
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQ-NAAYIFNQMKNF-CSPNLVTCNIMVKAY 240
+ ++ V V SY+ I AC GN+ A + +M +PN V N + A
Sbjct: 405 LLREMPTVGLHTTVFSYSSAIDAC-GKGNLWIKAKELLREMATVGLAPNEVCYNSAIDAC 463
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+EEA+ L +EM GL PD++++++ + ACA +W + V
Sbjct: 464 GRGDQWEEAVDLLREM-----------PTVGLS-PDVFSYSSAIAACAKGDQWKEALAVL 511
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
K M GL + + I S+ G+ ++ + RA +TP
Sbjct: 512 KEMSAAGLAPDLICYNSAIDACSKGGRWKMAVALLGEM-RAAGLTP 556
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 134/301 (44%), Gaps = 33/301 (10%)
Query: 19 QAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFW 78
++G ++ +D M+ LP D Y + AC R QWE A
Sbjct: 9 RSGDWRKALRAVDGMKKLPGWLI--------------DQKSYCMAITACGRGGQWEQAVR 54
Query: 79 VLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLW 137
+L+++ +G P + Y V++ G++ + F ++ K P+A +Y +N
Sbjct: 55 LLREMPTEGAAPDLSAYSAVIDACAKGGQWKMAVFFLMEMPTKGIAPDARSYGAAINACA 114
Query: 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV 197
R G+ A+ + +M R + + +Y AG+ E A+ + ++ V P V+
Sbjct: 115 RGGRWKIALDLLREMLARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKEMATVGLAPDVI 174
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
SY+ I AC G + A +F M+ + +P+++T + A G ++EA+ L
Sbjct: 175 SYSSAISACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAACANGGRWKEAVSLL--- 231
Query: 257 AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD---DL--ELVYKRMLHHGLHFN 311
R+ GL P++ ++++++ ACA E +W DL E+ R+ + + +N
Sbjct: 232 --------RKIPTVGLT-PNVISYSSVITACAKEGQWKIALDLLREMKAMRLAPNIITYN 282
Query: 312 A 312
A
Sbjct: 283 A 283
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/309 (19%), Positives = 129/309 (41%), Gaps = 29/309 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD ++Y S G+ G +E ++ + MR+ + PD++ Y + +
Sbjct: 171 PDVISYSSAISACGRGGRWEEALELFEDMRT---------------SGVAPDVITYGSAI 215
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
AC +W+ A +L+++ G P+ +Y V+ G++ + + R+++ +
Sbjct: 216 AACANGGRWKEAVSLLRKIPTVGLTPNVISYSSVITACAKEGQWKIALDLLREMKAMRLA 275
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y ++ + G+ EA+ + +M G+ Y + + +EA+
Sbjct: 276 PNIITYNAAIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACSKGDRWKEAIDI 335
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ ++ V P +SY I AC G + A + +M + ++ N + A +
Sbjct: 336 LREMPTVGLSPNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVIGYNSAIAACAK 395
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
++EA+ L +EM H ++++++ +DAC W + + +
Sbjct: 396 GEQWKEALALLREMPTVGLHTT------------VFSYSSAIDACGKGNLWIKAKELLRE 443
Query: 303 MLHHGLHFN 311
M GL N
Sbjct: 444 MATVGLAPN 452
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 129/290 (44%), Gaps = 37/290 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ ++Y S + G KE + +R +P G +R ++ YN+ +
Sbjct: 346 PNAISYNSAIDACAKGGQWKEAKGL---LREMPT----AGVTQR--------VIGYNSAI 390
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL---VYEFFRKVQK- 120
AC + +QW+ A +L+++ G + +Y ++ ACGK NL E R++
Sbjct: 391 AACAKGEQWKEALALLREMPTVGLHTTVFSYSSAID---ACGKGNLWIKAKELLREMATV 447
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG-KCEE 179
PN + Y ++ R + +EAV + +M G+ Y A C+ G + +E
Sbjct: 448 GLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGL-SPDVFSYSSAIAACAKGDQWKE 506
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVK 238
AL + ++ P ++ Y I AC G + A + +M+ +PN+++ + +
Sbjct: 507 ALAVLKEMSAAGLAPDLICYNSAIDACSKGGRWKMAVALLGEMRAAGLTPNIISYSSAID 566
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
A + G ++E + L +EM + V+PD+ T++ ++ CA
Sbjct: 567 ACVRGGQWKEGIALLEEM------------RGSGVVPDVITYHALMVTCA 604
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/341 (19%), Positives = 136/341 (39%), Gaps = 64/341 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y + + G KE D++ M ++ L PD+V Y++V+
Sbjct: 276 PNIITYNAAIDACAKGGRWKEAIDLLREMPTV---------------GLPPDVVSYSSVI 320
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+AC + +W+ A +L+++ G P+A +Y ++ G++ R++ + +
Sbjct: 321 DACSKGDRWKEAIDILREMPTVGLSPNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVT 380
Query: 125 N-ALAYKVLVNTL-----WRE---------------------------GKTDEAVSAVED 151
+ Y + W+E GK + + A E
Sbjct: 381 QRVIGYNSAIAACAKGEQWKEALALLREMPTVGLHTTVFSYSSAIDACGKGNLWIKAKEL 440
Query: 152 MERRGIVGSAA--LYYDLARCLCSAG-KCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+ VG A + Y+ A C G + EEA+ + ++ V P V SY+ I AC
Sbjct: 441 LREMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSPDVFSYSSAIAACAK 500
Query: 209 SGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
+ A + +M +P+L+ N + A + G ++ A+ L EM
Sbjct: 501 GDQWKEALAVLKEMSAAGLAPDLICYNSAIDACSKGGRWKMAVALLGEM----------- 549
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+ + P+I ++++ +DAC +W + + + M G+
Sbjct: 550 -RAAGLTPNIISYSSAIDACVRGGQWKEGIALLEEMRGSGV 589
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 18/105 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y S + G K ++ MR+ L P+I+ Y++ +
Sbjct: 521 PDLICYNSAIDACSKGGRWKMAVALLGEMRA---------------AGLTPNIISYSSAI 565
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ACVR QW+ +L++++ G P TY +M+ C KY+
Sbjct: 566 DACVRGGQWKEGIALLEEMRGSGVVPDVITY---HALMVTCAKYD 607
>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
Length = 581
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 140/302 (46%), Gaps = 17/302 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
EPD+V Y+ +++ + + A +++++ ++G P TY ++++ + GK +
Sbjct: 6 FEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEAD 65
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F K +++ N +AY L+N L ++ + A +E+M +G Y + L
Sbjct: 66 ELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGL 125
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM---KNFCSP 228
C GK EA D + P VV+Y GL+ A G + A +F M +P
Sbjct: 126 CRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAP 185
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
+L+T N ++ + +EAMKLF+++ I + Y +PD T+N++L A
Sbjct: 186 DLITYNTLIDGFCRVEKTDEAMKLFKDV------IAKGY------MPDTVTYNSILLGLA 233
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPA 348
+ D+ E ++K+M+ G N + ++ R G + +E + R +P
Sbjct: 234 RKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEK-RFSPDV 292
Query: 349 LI 350
L+
Sbjct: 293 LL 294
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/351 (22%), Positives = 146/351 (41%), Gaps = 49/351 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLERWDPR 52
PD V Y +I L + G + E ++++ M + + + G ++ D
Sbjct: 8 PDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADEL 67
Query: 53 LEPDI--------VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
I V YNA++N + + E A+ +L+++ +G +P TY ++ +
Sbjct: 68 FHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCR 127
Query: 105 CGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEA--VSAVEDMERRGIVGSA 161
GK + +FF + + Y P+ +AY L++ L++EGK EA + DM R +
Sbjct: 128 MGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDL 187
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L C K +EA+ + P V+Y ++ N+ A +F +
Sbjct: 188 ITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKK 247
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE---------------------- 258
M + C+PN T +I++ + G ++L++EM E
Sbjct: 248 MVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKK 307
Query: 259 --DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
D++ + E K G +PD+ T+N +LD D ++ M+ +G
Sbjct: 308 VDDAHKVLEEMSKIG-AVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNG 357
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 94/432 (21%), Positives = 181/432 (41%), Gaps = 40/432 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKE---LFDVID-SMRSLPKKKFKTGTL-------ERWDPRL 53
PD VAY + L + G + E LF +D + R + TL E+ D +
Sbjct: 148 PDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAM 207
Query: 54 E-----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
+ PD V YN++L R+ + A + +++ G P+ TY +V+
Sbjct: 208 KLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGH 267
Query: 103 LACGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
G E + ++ +K + P+ L +++ L + K D+A +E+M + G V
Sbjct: 268 CRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDV 327
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L LC ++A + P +VSY+ ++ + + +A +F++
Sbjct: 328 VTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDR 387
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
M + P++VT NI++ + G +EA L M+E + V+PD T
Sbjct: 388 MIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHN------------VLPDGVTC 435
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
T++ +KR D+ +++ M+ G + H ++ R GK+ + ++ + +
Sbjct: 436 TTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVK 495
Query: 341 AD-RITPPALIKERFCNRL-ENKDYGSAISCLVSHPVSG-SPEF-SRNAWLKFFKENSQH 396
+D +P + N L E A+ SG +P++ + N + ++ +H
Sbjct: 496 SDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRH 555
Query: 397 FGQDTLIQLLHE 408
D L Q + E
Sbjct: 556 IQADRLTQAMKE 567
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 15/187 (8%)
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+K + P+ + Y +++ L + GK EA+ VE+M +G+ A Y + LC AGK +
Sbjct: 3 EKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVD 62
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIM 236
EA K+ + V+Y LI NI+ A + +M K + P+ +T N +
Sbjct: 63 EADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGY-EPDNITYNTI 121
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ G EA + F M +R Y PD+ +N +LDA E + +
Sbjct: 122 LSGLCRMGKVSEAKQFFDSMP------SRGYS------PDVVAYNGLLDALYKEGKVAEA 169
Query: 297 ELVYKRM 303
++K M
Sbjct: 170 WGLFKTM 176
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 19/217 (8%)
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
M +G Y + LC GK EAL ++++ + P V +YT ++ +G
Sbjct: 1 MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60
Query: 212 IQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270
+ A +F++M + CS N V N ++ + E A KL +EMA ++ Y+
Sbjct: 61 VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMA------SKGYE-- 112
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
PD T+NT+L + + + + M G + + ++ + GKV
Sbjct: 113 ----PDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAE 168
Query: 331 LEITWEHLARADRITPPALIK-----ERFCNRLENKD 362
++ + ADR P LI + FC R+E D
Sbjct: 169 AWGLFKTMDMADRKVAPDLITYNTLIDGFC-RVEKTD 204
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 77/177 (43%), Gaps = 23/177 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHI---KELFDVIDSMRSLPKKKFKTGTL------ERWDPRLE- 54
PD V + + L +AG + K+L DV+ LP T + +R D +
Sbjct: 395 PDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRL 454
Query: 55 ----------PDIVVYNAVLNACVRRKQWEGAFWVLQQL-KQQGQ-KPSATTYGLVMEVM 102
D++ +N VL R + A + + K G+ P TY ++ +
Sbjct: 455 FQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNAL 514
Query: 103 LACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ G+ + ++F+++ S P+ +AY L+N L ++G+ +A + M+ +G +
Sbjct: 515 IEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFL 571
>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Vitis vinifera]
gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 148/331 (44%), Gaps = 37/331 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHI---KELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
P+ V Y +I +L + G I KELF LE + PD+V Y+
Sbjct: 236 PNLVCYCTIIDSLCKDGLIDKGKELF------------------LEMKGRGISPDVVAYS 277
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQK 120
++++ +WEGA + ++ +G P+ T+ ++++ + GK + +Q+
Sbjct: 278 SIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQR 337
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
P+ Y L++ EG+ D+A ME +GI A Y L C +G+ EA
Sbjct: 338 GESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEA 397
Query: 181 L-MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVK 238
+ + +CK P V++Y L+ G +++A +F +MK + +P T NI++
Sbjct: 398 KKLYREMMCKEI-MPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLD 456
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
++ EAM+LF + N ++ P I FN ++D ++ +
Sbjct: 457 GLCKNNHLSEAMELFHYLE------NHDFQ------PSIQIFNCLIDGLCKARKIEIARE 504
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++ R+ H GL N + MI ++G++E
Sbjct: 505 LFNRLSHEGLEPNVITYTVMIHGLCKSGQLE 535
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 142/333 (42%), Gaps = 38/333 (11%)
Query: 7 TVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNA 66
T S LG IK FDVI SL K+ G L PD + N ++N
Sbjct: 89 TPPISSFNTLLGAVAKIKRYFDVI----SLYKRMSLIG--------LAPDFITLNILINC 136
Query: 67 CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPN 125
+ + VL ++ ++G P+ T+ +++ + + + RK V+ Y PN
Sbjct: 137 YCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPN 196
Query: 126 ALAYKVLVNTLWREGKTDEAVSAVEDM-ERRGIVG-----SAALYYDLARCLCSAG---K 176
+ Y L+N L G T AV E+M G G + Y + LC G K
Sbjct: 197 VVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDK 256
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNI 235
+E ++M P VV+Y+ +I +G + A +FN+M + PN+VT N+
Sbjct: 257 GKELFLEMKG---RGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNV 313
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
++ A + G EEA L + M + PD +T+NT++D E R DD
Sbjct: 314 LIDALCKAGKMEEANHLLKLMIQRGES------------PDTFTYNTLIDGFCLEGRIDD 361
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
++ M G+ +A + +I ++G++
Sbjct: 362 ARDLFVSMESKGIETDAVSYNVLINGYCKSGRM 394
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 130/291 (44%), Gaps = 29/291 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT Y ++ G I + D+ SM S +E D V YN ++
Sbjct: 341 PDTFTYNTLIDGFCLEGRIDDARDLFVSMES---------------KGIETDAVSYNVLI 385
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
N + + A + +++ + P+ TY ++ + GK + F +++
Sbjct: 386 NGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLT 445
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y +L++ L + EA+ +E S ++ L LC A K E A
Sbjct: 446 PESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIAREL 505
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+++ +P V++YT +I SG ++NA +F M + C+PNLVT N +++ + +
Sbjct: 506 FNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQ 565
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
+ ++ ++L QEMAE +++ PD T + ++D + ++++
Sbjct: 566 NDEMQKVVELLQEMAE------KDFS------PDASTISIVVDLLSKDEKY 604
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/292 (21%), Positives = 124/292 (42%), Gaps = 25/292 (8%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVN 134
AF V L P +++ ++ + +Y V ++++ P+ + +L+N
Sbjct: 76 AFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILIN 135
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194
K D ++ + +M RRG + + L + LC + EA + K+ ++ +P
Sbjct: 136 CYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRP 195
Query: 195 LVVSYTGLIQACLDSGNIQNAAYIFNQMKN-------FCSPNLVTCNIMVKAYLEHGLFE 247
VV+Y L+ +GN A + +M N PNLV ++ + + GL +
Sbjct: 196 NVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLID 255
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
+ +LF EM K + PD+ +++++ RW+ + ++ M+ G
Sbjct: 256 KGKELFLEM------------KGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEG 303
Query: 308 LHFNAKRHLRMILDASRAGKVE----LLEITWEHLARADRITPPALIKERFC 355
+H N +I +AGK+E LL++ + D T LI + FC
Sbjct: 304 VHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLI-DGFC 354
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 128/312 (41%), Gaps = 35/312 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+TV + S+ L I E L +K + G P++V Y +L
Sbjct: 160 PNTVTFTSLVKGLCLGSRISE-------ATGLLRKMVRMG--------YRPNVVTYGTLL 204
Query: 65 NA-CVRRKQWEGAFWVLQQLKQQGQ-----KPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
N C+ + L G KP+ Y +++ + G + E F ++
Sbjct: 205 NGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEM 264
Query: 119 QKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+ I P+ +AY +++ + G+ + A +M G+ + + L LC AGK
Sbjct: 265 KGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKM 324
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIM 236
EEA + + + P +Y LI G I +A +F M++ + V+ N++
Sbjct: 325 EEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVL 384
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ Y + G EA KL++EM + +E ++P + T+NT+L E + D
Sbjct: 385 INGYCKSGRMVEAKKLYREM------MCKE------IMPTVITYNTLLTGLFREGKVRDA 432
Query: 297 ELVYKRMLHHGL 308
++ M H L
Sbjct: 433 WNLFGEMKVHDL 444
>gi|299471515|emb|CBN80001.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 687
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 158/355 (44%), Gaps = 48/355 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTLERWDPRLEPDIVVYNA 62
PD V Y S G KE D+++ M + +P P+++ YN+
Sbjct: 180 PDVVTYNSAIAACSNGGRWKEAMDLLEQMVAQGVP-----------------PNLITYNS 222
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY 122
+ AC + ++WE A +L+++ +QG PS TY V++ G++ + ++ +
Sbjct: 223 AIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDACAKGGRWLEAMDLLGQMLTND 282
Query: 123 IP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG-KCEEA 180
IP + ++Y ++ R + EA+ +E M +G V + Y+ A C+ G + +EA
Sbjct: 283 IPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQG-VSPNVISYNSAIDACAKGDRWKEA 341
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
L + ++ V P V+SY AC +G A + +M +PN ++ N + A
Sbjct: 342 LDLLREMTTVGLVPTVISYNSATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSALDA 401
Query: 240 YLEHGLFEEAMKLFQEMA------------------------EDSNHINREYDKKGLVIP 275
+ G +E+A+KL + M+ E + + RE GL P
Sbjct: 402 CAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAIDACGRGQQWETAVELLREMPTAGLT-P 460
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
++ T+N+ ++AC RW + +++ M GL N + MI ++ + EL
Sbjct: 461 NVITYNSAIEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWEL 515
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 141/318 (44%), Gaps = 31/318 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T++Y S + G ++ ++ M ++ +PDI+ +N+ +
Sbjct: 390 PNTISYNSALDACAKGGQWEKAVKLLRGMSTVGS---------------DPDIISFNSAI 434
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+AC R +QWE A +L+++ G P+ TY +E ++ FR++ +
Sbjct: 435 DACGRGQQWETAVELLREMPTAGLTPNVITYNSAIEACGRSARWQEAMGLFREMPTRGLS 494
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y +++ + + + AV + M RG V + Y+ A C G+ E +Q
Sbjct: 495 PNVVTYNSMIDACAKGEQWELAVQLLTGMPARG-VAPDVISYNSAIEACGKGEQWELALQ 553
Query: 184 MDK-ICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYL 241
+ K + KP ++SY + AC SG + A + M +PN V+ + A
Sbjct: 554 LLKGMPTRGPKPDIISYNSAVTACAKSGRWREALGLLKDMATVGLTPNTVSYGAAIHACG 613
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ ++ A+++ +EM P++ T++ +DACA + RW + +
Sbjct: 614 KGEQWDVAVRILKEMQTHG------------ATPNLITYSAAIDACAKQGRWKEAVDLLT 661
Query: 302 RMLHHGLHFNAKRHLRMI 319
+ GL +A+ +L +I
Sbjct: 662 DLRRQGLTPDAQTYLTVI 679
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 123/281 (43%), Gaps = 16/281 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQL--KQQGQKPSATTYGLVMEVMLACGKYNL 110
+ PD+V YN+ + AC + +W+ A +L Q+ +G P TY + G++
Sbjct: 141 VTPDVVTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGGRWKE 200
Query: 111 VYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
+ + V + PN + Y + + + +EA+ +E++ +G S Y +
Sbjct: 201 AMDLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPVID 260
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSP 228
G+ EA+ + ++ V+SY+ +I AC + A + QM+ SP
Sbjct: 261 ACAKGGRWLEAMDLLGQMLTNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSP 320
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
N+++ N + A + ++EA+ L +EM GLV P + ++N+ ACA
Sbjct: 321 NVISYNSAIDACAKGDRWKEALDLLREMT-----------TVGLV-PTVISYNSATAACA 368
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
RW + + K M G+ N + + ++ G+ E
Sbjct: 369 VNGRWVEALELLKEMPAQGIAPNTISYNSALDACAKGGQWE 409
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 113/258 (43%), Gaps = 18/258 (6%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D YN + AC +QW A +L+++ +G P TY + G++ +
Sbjct: 109 DTTSYNIAIAACSNGRQWATAVRLLREMPTEGVTPDVVTYNSAIAACSKGGRWKEAMDLL 168
Query: 116 RKV---QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++ + P+ + Y + G+ EA+ +E M +G+ + + Y+ A C
Sbjct: 169 TQMVAPTEGITPDVVTYNSAIAACSNGGRWKEAMDLLEQMVAQGVPPN-LITYNSAIGAC 227
Query: 173 SAG-KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
+ G + EEA+ ++++ + P +Y +I AC G A + QM N ++
Sbjct: 228 AKGRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDACAKGGRWLEAMDLLGQMLTNDIPADV 287
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
++ + ++ A ++EAM L ++M V P++ ++N+ +DACA
Sbjct: 288 ISYSSVIAACGRGRRWKEAMDLLEQMRTQG------------VSPNVISYNSAIDACAKG 335
Query: 291 KRWDDLELVYKRMLHHGL 308
RW + + + M GL
Sbjct: 336 DRWKEALDLLREMTTVGL 353
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 20/121 (16%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLP---------KKKFKTGTLERWDPRLE- 54
PD ++Y S ++G +E ++ M ++ G E+WD +
Sbjct: 565 PDIISYNSAVTACAKSGRWREALGLLKDMATVGLTPNTVSYGAAIHACGKGEQWDVAVRI 624
Query: 55 ----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
P+++ Y+A ++AC ++ +W+ A +L L++QG P A TY V+
Sbjct: 625 LKEMQTHGATPNLITYSAAIDACAKQGRWKEAVDLLTDLRRQGLTPDAQTYLTVISAFQR 684
Query: 105 C 105
C
Sbjct: 685 C 685
>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1043
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/329 (23%), Positives = 152/329 (46%), Gaps = 29/329 (8%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S PDT Y + L ++ + E ++DSM+ + + PD+ Y
Sbjct: 698 SLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMK---------------NQNILPDLFTYT 742
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QK 120
++L+ + + E AF + ++ ++G +P Y +M+V+ GK + FR + +K
Sbjct: 743 SLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKK 802
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+P+ + Y L+++L +EG+ +EA E+ +G + +Y L G + A
Sbjct: 803 RCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRA 862
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
L +++ + P +V+Y L+ +G + A + +M+ C P+LVT NI++
Sbjct: 863 LELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDG 922
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ G+ +EA F+ M E KG+V PD+ TF +++++ + + +
Sbjct: 923 VGKMGMVDEAESYFKRMKE-----------KGIV-PDVITFTSLIESLGKVDKLLEACEL 970
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+ M G + + + +I RAGKV
Sbjct: 971 FDSMEEEGYNPSVVTYNVLIDILGRAGKV 999
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 148/344 (43%), Gaps = 45/344 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR----------------SLPKKKFKTGTLER 48
P V Y ++ LG+AG + E ++ M S K+ + +L
Sbjct: 561 PTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSL 620
Query: 49 WDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+D + D+ Y+ V+N + + A V ++K++G +P Y ++ ++
Sbjct: 621 FDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVK 680
Query: 105 CGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
K + + F ++Q+S +P+ Y ++VN L + + DEA V+ M+ + I+
Sbjct: 681 DEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFT 740
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y L L +G+ EEA K+ + ++P VV+YT L+ G + +A IF M
Sbjct: 741 YTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMA 800
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKGLVI 274
K C P++VT + ++ + + G EEA F+ + + + KKG+V
Sbjct: 801 KKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVD 860
Query: 275 ---------------PDIYTFNTMLDACAAEKRWDDLELVYKRM 303
P+I T+N +L A R + E + + M
Sbjct: 861 RALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEM 904
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 119/258 (46%), Gaps = 25/258 (9%)
Query: 75 GAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLV 133
GA + Q+K G PS Y V+E+++ G Y+ F K+ + I P+A +++ V
Sbjct: 235 GALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFV 294
Query: 134 NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANK 193
++ R G+ D A +++M + GI + L L +G +EA + + +
Sbjct: 295 HSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCS 354
Query: 194 PLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKL 252
P VV+YT L+ +G ++ A +F +MK N CSP+ + N ++ + G + A L
Sbjct: 355 PNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGL 414
Query: 253 FQEMAEDSNHIN-REYD----------------------KKGLVIPDIYTFNTMLDACAA 289
F+EM + N R Y+ K+ +PD++T+NT++D
Sbjct: 415 FKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGK 474
Query: 290 EKRWDDLELVYKRMLHHG 307
+ D + + K M+ G
Sbjct: 475 GGQMDKVLAIIKEMVEKG 492
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 115/234 (49%), Gaps = 17/234 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ +LG+ G ++E + ++ S+ K P++ VY++++
Sbjct: 806 PDVVTYSSLIDSLGKEGRVEEAYYFFEN--SISKG-------------CTPNVGVYSSLI 850
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
++ ++ + A + ++++++ P+ TY ++ + G+ N+ + +++K +
Sbjct: 851 DSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCV 910
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y +L++ + + G DEA S + M+ +GIV + L L K EA
Sbjct: 911 PDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACEL 970
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIM 236
D + + P VV+Y LI +G + AA IF++MK C P+ +T IM
Sbjct: 971 FDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGITIGIM 1024
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/338 (20%), Positives = 145/338 (42%), Gaps = 60/338 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L +AG ++E +V M+ + PD + YN ++
Sbjct: 355 PNVVTYTTLVNGLAKAGRLEEACEVFVEMK---------------ENNCSPDAIAYNTLI 399
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + + + A + +++K +G P+ TY +++ V+ G+ ++ F + ++ +
Sbjct: 400 DGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAV 459
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRG--------------------------- 156
P+ Y L++ L + G+ D+ ++ +++M +G
Sbjct: 460 PDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYP 519
Query: 157 IVGSAAL----YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI 212
+G +L Y L G +EA+ ++ + K P VV+YT L+ +G +
Sbjct: 520 SLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRL 579
Query: 213 QNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKG 271
A + +M K C P++VT + ++ ++ + EE++ LF EM +KG
Sbjct: 580 DEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMV-----------RKG 628
Query: 272 LVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH 309
V D+ T++ +++ D V+ RM G+
Sbjct: 629 CV-ADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGME 665
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 118/254 (46%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD VAY S+ LG+ G + + R++ KK R PD+V Y++++
Sbjct: 771 PDVVAYTSLMDVLGKGGKLSHALIIF---RAMAKK------------RCVPDVVTYSSLI 815
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
++ + + E A++ + +G P+ Y +++ G + E F ++Q+ P
Sbjct: 816 DSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCP 875
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + Y L++ L + G+ + A +E+ME+ G V Y L + G +EA
Sbjct: 876 PNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESY 935
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLE 242
++ + P V+++T LI++ + A +F+ M+ +P++VT N+++
Sbjct: 936 FKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGR 995
Query: 243 HGLFEEAMKLFQEM 256
G EA +F EM
Sbjct: 996 AGKVHEAAMIFHEM 1009
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 87/438 (19%), Positives = 172/438 (39%), Gaps = 104/438 (23%)
Query: 5 PDTVAYRSIAVTLGQAGH-------IKELFD--VIDSMRS---LPKKKFKTGTL-ERW-- 49
PD +AY ++ LG+AG KE+ D ++ ++R+ + K G E W
Sbjct: 390 PDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQL 449
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG----------------- 87
+ PD+ YN +++ + Q + +++++ ++G
Sbjct: 450 FHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTI 509
Query: 88 -------QKPS-------ATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVL 132
+ PS TY +M + G + + ++K IP + Y L
Sbjct: 510 EGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTL 569
Query: 133 VNTLWREGKTDEAVSAVEDME-----------------------------------RRGI 157
V+ L + G+ DEAVS + +ME R+G
Sbjct: 570 VDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGC 629
Query: 158 VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217
V + Y + CLC + ++AL ++ + +PL+ +Y L+ + + I A
Sbjct: 630 VADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQ 689
Query: 218 IFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
IFN+++ + P+ NIMV ++ +EA KL M + ++PD
Sbjct: 690 IFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQN------------ILPD 737
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWE 336
++T+ ++LD R ++ ++ +M G + + ++ + GK+ I +
Sbjct: 738 LFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFR 797
Query: 337 HLARA----DRITPPALI 350
+A+ D +T +LI
Sbjct: 798 AMAKKRCVPDVVTYSSLI 815
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 128/310 (41%), Gaps = 43/310 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P + + L ++G+I E + M++L R P++V Y ++
Sbjct: 320 PGVHTFTVLIDALVKSGNIDEACKFFNGMKNL---------------RCSPNVVTYTTLV 364
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
N + + E A V ++K+ P A Y +++ + G+ ++ F++++ + +
Sbjct: 365 NGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLV 424
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y ++++ L + G+ EA D++ +G V Y L L G Q
Sbjct: 425 PNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGG-------Q 477
Query: 184 MDKICKVANKPLVVSYTGLIQACLDS-----GNIQNAAYIFNQMK-NFCSPNLVTCNIMV 237
MDK+ + + +V G DS G I+ A F S +T N ++
Sbjct: 478 MDKVLAIIKE--MVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLM 535
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
A++ +G +EA+KL + M KK IP + T+ T++D R D+
Sbjct: 536 SAFIHNGHVDEAVKLLEVM------------KKHECIPTVVTYTTLVDGLGKAGRLDEAV 583
Query: 298 LVYKRMLHHG 307
+ + M G
Sbjct: 584 SLLREMEKQG 593
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 67/319 (21%), Positives = 121/319 (37%), Gaps = 81/319 (25%)
Query: 51 PRLE-PDIVVYNAV------------LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGL 97
PRL+ P+I AV +N +RR++W+ +QL++ K + GL
Sbjct: 97 PRLDVPEISNLEAVERSGGDKFKLKKINGVIRRRKWDAEMG--KQLERLKFKLNP---GL 151
Query: 98 VMEVMLACGKYNLVYEFFR--KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERR 155
V +V++ +L FF Q Y Y +++ L +TD V + M +
Sbjct: 152 VCDVVVNQKDLHLAKCFFTWAGQQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKE 211
Query: 156 GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA 215
G S L L R S + N+ A
Sbjct: 212 GHRISMHLLTSLLRTFGS-----------------------------------TNNVSGA 236
Query: 216 AYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE-----DS-------NH 262
IFNQMK+F C+P+ N +++ ++ G + A+ +F ++ + D+ +
Sbjct: 237 LEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHS 296
Query: 263 INR------------EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHF 310
NR E K G + P ++TF ++DA D+ + M +
Sbjct: 297 FNRSGRLDPAAEPIQEMIKSG-IDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSP 355
Query: 311 NAKRHLRMILDASRAGKVE 329
N + ++ ++AG++E
Sbjct: 356 NVVTYTTLVNGLAKAGRLE 374
>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
Length = 794
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 136/279 (48%), Gaps = 14/279 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD++ YN +++A + + AF ++ ++ + G K T ++ + +Y
Sbjct: 417 LAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAE 476
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E R Q+ ++P+ ++Y ++ ++E K + A+ ++M +R + S Y L + L
Sbjct: 477 ELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGL 536
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C+ GK EA+ +++++ K P +Y +I A G+++ A N+M +N+ P++
Sbjct: 537 CTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDV 596
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VTCN ++ HG E+A+KLF+ AE + D+ T+NT++ A +
Sbjct: 597 VTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKV------------DVITYNTLIQALCKD 644
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
D + M GL +A + ++ S AG+ E
Sbjct: 645 GDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSE 683
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 107/261 (40%), Gaps = 48/261 (18%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD+V YN +L A R+ A +L ++K++G P+ TY
Sbjct: 241 LSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYN---------------- 284
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
LV+ R G +A + VE M G Y LA LC
Sbjct: 285 ------------------TLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLC 326
Query: 173 SAGKCEEALMQMDKICKVA-NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
AGK +EA D++ ++ P VV+Y L+ AC +A + +M++ +L
Sbjct: 327 QAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSL 386
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT NI+VK G EEA+ + M E+ + PD+ T+NT++DA
Sbjct: 387 VTHNIVVKGLCREGQLEEALGRLKMMTEEG------------LAPDVITYNTLIDAYCKA 434
Query: 291 KRWDDLELVYKRMLHHGLHFN 311
+ ++ M+ GL +
Sbjct: 435 RNVAKAFVLMDEMVRSGLKMD 455
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 19/238 (7%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + +LV+T +G +A+S + M+ G+ Y L + C G EA
Sbjct: 208 PNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTL 267
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLE 242
+ ++ K P +Y L+ A G I+ A + M F P+L T N++ +
Sbjct: 268 LARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQ 327
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +EA KL EM H++ +V PD+ T+NT++DAC +R D + +
Sbjct: 328 AGKVDEAFKLKDEM----EHLS-------IVSPDVVTYNTLVDACFKYQRSSDALNLLEE 376
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE-----LLEITWEHLARADRITPPALIKERFC 355
M G+ + H ++ R G++E L +T E LA D IT LI + +C
Sbjct: 377 MRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLA-PDVITYNTLI-DAYC 432
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 19/183 (10%)
Query: 23 IKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQ 82
I +L + ID + L KK L PD YN +++A + E AF +
Sbjct: 539 IGKLTEAIDKLNELMKKG------------LVPDDTTYNIIIHAYCKEGDLEKAFQFHNK 586
Query: 83 LKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGK 141
+ + KP T +M + GK + F +K + + Y L+ L ++G
Sbjct: 587 MLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGD 646
Query: 142 TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA---LMQMDKICKVANK---PL 195
D A+ DME RG+ A Y + L AG+ EEA L ++D+ K++ + PL
Sbjct: 647 VDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESGKLSERFSYPL 706
Query: 196 VVS 198
+ S
Sbjct: 707 IKS 709
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 66/164 (40%), Gaps = 4/164 (2%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D++ YN ++ A + + A ++ +G +P A TY +V+ + G+
Sbjct: 630 DVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNML 689
Query: 116 RKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV--GSAALYYDLARCLC 172
K+ +S + +Y L+ + E KT + D E G G Y + LC
Sbjct: 690 HKLDESGKLSERFSYP-LIKSSAEEVKTGKDPEVKSDCESGGNAKGGDQESYNKSVKELC 748
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
G+ +EA +D++ + +Y L++ + Q A
Sbjct: 749 VGGQLKEAKAVLDEMMQKGMSVDSSTYITLMEGLIKRQKRQTHA 792
>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
Length = 1245
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 131/287 (45%), Gaps = 14/287 (4%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPD +N ++ + A ++ ++ + G +P TY ++ + G +L +
Sbjct: 145 EPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALD 204
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
RK+++ + + Y ++++L R+G D A+S ++ME +GI S Y L R LC
Sbjct: 205 LLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC 264
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
AGK + + + + P V+++ L+ + G +Q A ++ +M SPN++
Sbjct: 265 KAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNII 324
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ Y EA + M + PDI TF +++ K
Sbjct: 325 TYNTLMDGYCMQNRLSEANNMLDLMVRNKCS------------PDIVTFTSLIKGYCMVK 372
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
R DD V++ + GL NA + ++ ++GK++L E ++ +
Sbjct: 373 RVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEM 419
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 141/327 (43%), Gaps = 29/327 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y SI + ++G D++ M ER ++ D+ Y+ ++
Sbjct: 181 PDVVTYNSIVNGICRSGDTSLALDLLRKME------------ER---NVKADVFTYSTII 225
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
++ R + A + ++++ +G K S TY ++ + GK+N + V + +
Sbjct: 226 DSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIV 285
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + VL++ +EGK EA ++M RGI + Y L C + EA
Sbjct: 286 PNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNM 345
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQMKNFCSPNLVTCNIMVKAYLE 242
+D + + P +V++T LI+ + + +F N K N VT +I+V+ + +
Sbjct: 346 LDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQ 405
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + A +LFQEM V+PD+ T+ +LD + + +++
Sbjct: 406 SGKIKLAEELFQEMVSHG------------VLPDVMTYGILLDGLCDNGKLEKALEIFED 453
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + + +I + GKVE
Sbjct: 454 LQKSKMDLGIVMYTTIIEGMCKGGKVE 480
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 115/259 (44%), Gaps = 14/259 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P +V ++ +A R KQ+ +QL+ G + T +++ C K Y
Sbjct: 76 PSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 135
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
KV K Y P+ + L+ L+ EGK EAV V+ M G Y + +C
Sbjct: 136 LGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICR 195
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVT 232
+G AL + K+ + K V +Y+ +I + G I A +F +M+ ++VT
Sbjct: 196 SGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVT 255
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N +V+ + G + + L ++M ++RE ++P++ TFN +LD E +
Sbjct: 256 YNSLVRGLCKAGKWNDGALLLKDM------VSRE------IVPNVITFNVLLDVFVKEGK 303
Query: 293 WDDLELVYKRMLHHGLHFN 311
+ +YK M+ G+ N
Sbjct: 304 LQEANELYKEMITRGISPN 322
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 103/207 (49%), Gaps = 2/207 (0%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
+ PDIV + +++ K+ + V + + ++G +A TY ++++ GK L
Sbjct: 353 KCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLA 412
Query: 112 YEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
E F++ V +P+ + Y +L++ L GK ++A+ ED+++ + +Y +
Sbjct: 413 EELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG 472
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
+C GK E+A + KP V++YT +I G++ A + +M ++ +PN
Sbjct: 473 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 532
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEM 256
T N +++A+L G + KL +EM
Sbjct: 533 DCTYNTLIRAHLRDGDLTASAKLIEEM 559
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 104/236 (44%), Gaps = 14/236 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P+I+ YN +++ + + A +L + + P T+ +++ + +
Sbjct: 319 ISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGM 378
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ FR + K + NA+ Y +LV + GK A ++M G++ Y L L
Sbjct: 379 KVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGL 438
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C GK E+AL + + K +V YT +I+ G +++A +F + PN+
Sbjct: 439 CDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNV 498
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+T +M+ + G EA L ++M ED N P+ T+NT++ A
Sbjct: 499 MTYTVMISGLCKKGSLSEANILLRKMEEDGNA------------PNDCTYNTLIRA 542
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 16/159 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y + L G +++ ++ + L K K G IV+Y ++
Sbjct: 426 PDVMTYGILLDGLCDNGKLEKALEIFED---LQKSKMDLG------------IVMYTTII 470
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ + E A+ + L +G KP+ TY +++ + G + RK+++
Sbjct: 471 EGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNA 530
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
PN Y L+ R+G + +E+M+ G A+
Sbjct: 531 PNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADAS 569
>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
Length = 703
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 143/314 (45%), Gaps = 36/314 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPR--LEPDIVVYNA 62
PD + Y ++ L + + D++D M PR ++PD+V YNA
Sbjct: 191 PDCITYSTLMCGLAKQDRLDHALDLLDEM-----------------PRSGVQPDVVCYNA 233
Query: 63 VLNACVRRKQWEGAFWVLQQL-KQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQK 120
+L C + ++E V +L K G +P+ TY ++++ + G++ V E + R V
Sbjct: 234 LLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVAN 293
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ P+ + Y +L++ L R G D A ++ + G+V AA+Y L + C AG+ +EA
Sbjct: 294 NLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEA 353
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--FCSPNLVTCNIMVK 238
D + L +Y +I+ DSG + A +++ ++ C P+ VT ++
Sbjct: 354 WKFWDSAGFAGLRNL-RTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIH 412
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
++G +A +F+E + D++++++M++ R D
Sbjct: 413 GLCQNGFANKAFTIFEEARVSGKQL------------DVFSYSSMINGLCNVGRLVDAVK 460
Query: 299 VYKRMLHHGLHFNA 312
VY++M G N+
Sbjct: 461 VYEKMDKDGCKPNS 474
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/373 (20%), Positives = 159/373 (42%), Gaps = 50/373 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTL-----------------E 47
PD V Y ++ +AG +++ V D + P + T E
Sbjct: 226 PDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGE 285
Query: 48 RWD----PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
W+ L+PD++ Y +++ R +GA V ++ + G A Y +++
Sbjct: 286 VWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFC 345
Query: 104 ACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERR-GIVGSAA 162
G+ ++F+ + + N Y +++ L+ G DEA+ + +E+ +
Sbjct: 346 QAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTV 405
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPL-VVSYTGLIQACLDSGNIQNAAYIFNQ 221
+ L LC G +A ++ +V+ K L V SY+ +I + G + +A ++ +
Sbjct: 406 TFGTLIHGLCQNGFANKAFTIFEE-ARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEK 464
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE---------------------- 258
M K+ C PN N ++ + + +A++++ +MA+
Sbjct: 465 MDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEK 524
Query: 259 --DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316
+++ + RE + G PDI T+ +++ ++K+ DD ++K++L+ GL + H
Sbjct: 525 YQEASSVAREMVENGFT-PDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHN 583
Query: 317 RMILDASRAGKVE 329
+I AGKV+
Sbjct: 584 ILIHGLCSAGKVD 596
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 133/309 (43%), Gaps = 35/309 (11%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTL-- 46
++ PDTV + ++ L Q G + F + + R S+ G L
Sbjct: 398 VACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVD 457
Query: 47 -----ERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
E+ D +P+ +YNA+++ + + A + ++ G P+ TY +++
Sbjct: 458 AVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLID 517
Query: 101 VMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+ KY R+ V+ + P+ Y L+ L+ + K D+A+S + + +G+
Sbjct: 518 GLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKV 577
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYI 218
++ L LCSAGK +EAL + + N P +V+Y L+ ++G I AA +
Sbjct: 578 DVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATL 637
Query: 219 FNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI 277
+ + ++ P++++ N +K E ++L E+ +IP +
Sbjct: 638 WTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRG------------IIPTV 685
Query: 278 YTFNTMLDA 286
T+N ++ A
Sbjct: 686 ITWNILVRA 694
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 118/282 (41%), Gaps = 54/282 (19%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ--GQK--PSATTYGLVMEVMLACGKYNL 110
P I +NA+L+A VR +++ A L G++ P+ TY +V+ + A G +
Sbjct: 117 PGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDR 176
Query: 111 VYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
F +++ + P+ + Y L+ L ++ + D A+ +++M R G+
Sbjct: 177 AVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGV------------ 224
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCS 227
+P VV Y L+ C +G + +++++
Sbjct: 225 -----------------------QPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGAR 261
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
PNL T N+M+ + G F+E ++++ M +N++ PD+ T+ ++
Sbjct: 262 PNLATYNVMLDGLCKFGRFKEVGEVWERMV--ANNLQ----------PDVITYGILIHGL 309
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
D VY ++ GL +A + ++ +AG+V+
Sbjct: 310 CRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQ 351
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 113/270 (41%), Gaps = 48/270 (17%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R+ P++ YN VL + R + A + L+++ P TY +M + + +
Sbjct: 153 RIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHA 212
Query: 112 YEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERR-GIVGSAALYYDLAR 169
+ ++ +S + P+ + Y L+ ++ G+ ++ + + + + G + A Y +
Sbjct: 213 LDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLD 272
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM------- 222
LC G+ +E +++ +P V++Y LI SG++ AA +++++
Sbjct: 273 GLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVI 332
Query: 223 ---------KNFCSP-------------------NLVTCNIMVKAYLEHGLFEEAMKLFQ 254
K FC NL T NIM+K + G+ +EA++L+
Sbjct: 333 DAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWD 392
Query: 255 EMAEDSNHINREYDKKGLVIPDIYTFNTML 284
+ +D IPD TF T++
Sbjct: 393 LLEKDVA-----------CIPDTVTFGTLI 411
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 74/161 (45%), Gaps = 2/161 (1%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDI Y +++ K+ + A + +Q+ +G K + +++ + + GK +
Sbjct: 542 PDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHV 601
Query: 115 FR--KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F K +K+ PN + Y L++ L+ G D+A + + G+ Y + LC
Sbjct: 602 FSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLC 661
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQ 213
S + E + +D++ P V+++ L++A + G IQ
Sbjct: 662 SCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYGPIQ 702
>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
Length = 602
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 128/265 (48%), Gaps = 17/265 (6%)
Query: 32 SMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPS 91
++R++PK LE++ +PD+ YNA++N + + + A VL +++ + P
Sbjct: 136 TLRNIPKAVRVMEILEKFG---QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPD 192
Query: 92 ATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVE 150
TY +++ + + GK +L + + + + P + Y +L+ EG DEA+ ++
Sbjct: 193 TVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMD 252
Query: 151 DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG 210
+M RG+ Y + R +C G + A + + ++P V+SY L++A L+ G
Sbjct: 253 EMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQG 312
Query: 211 NIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
+ + +M C PN+VT +I++ G EEAM L + M E
Sbjct: 313 KWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKE----------- 361
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWD 294
KGL PD Y+++ ++ A E R D
Sbjct: 362 KGLT-PDAYSYDPLIAAFCREGRLD 385
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/370 (23%), Positives = 148/370 (40%), Gaps = 46/370 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD AY ++ + I + V+D MRS K F PD V YN ++
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRS---KDFS------------PDTVTYNIMI 200
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ R + + A VL QL +P+ TY +++E + G + + + + +
Sbjct: 201 GSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLK 260
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y ++ + +EG D A V ++E +G Y L R L + GK EE
Sbjct: 261 PDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKL 320
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
M K+ P VV+Y+ LI G I+ A + MK +P+ + + ++ A+
Sbjct: 321 MTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCR 380
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + A++ + M D +PDI +NT+L + D ++ +
Sbjct: 381 EGRLDVAIEFLETMISDG------------CLPDIVNYNTVLATLCKNGKADQALEIFGK 428
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKD 362
+ G N+ + M W + D+I +I E N ++ +
Sbjct: 429 LGEVGCSPNSSSYNTM------------FSALW---SSGDKIRALHMILEMMSNGIDPDE 473
Query: 363 --YGSAISCL 370
Y S ISCL
Sbjct: 474 ITYNSMISCL 483
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 141/331 (42%), Gaps = 51/331 (15%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD+ YN ++ + + AF +++ L+ +G +P +Y +++ +L GK+
Sbjct: 259 LKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGE 318
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL--AR 169
+ K+ + PN + Y +L+ TL R+GK +EA++ ++ M+ +G+ A Y L A
Sbjct: 319 KLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAF 378
Query: 170 C---------------------------------LCSAGKCEEALMQMDKICKVANKPLV 196
C LC GK ++AL K+ +V P
Sbjct: 379 CREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNS 438
Query: 197 VSYTGLIQACLDSGN-IQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
SY + A SG+ I+ I M N P+ +T N M+ G+ +EA +L +
Sbjct: 439 SSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVD 498
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
M H P + T+N +L R +D V + M+ +G N +
Sbjct: 499 MRSCEFH------------PSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTY 546
Query: 316 LRMILDASRAG-KVELLEITWEHLARADRIT 345
+I AG + E +E+ + L R D I+
Sbjct: 547 TVLIEGIGFAGYRAEAMELAND-LVRIDAIS 576
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 106/255 (41%), Gaps = 17/255 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y + TL + G I+E +++ M+ + L PD Y+ ++
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMK---------------EKGLTPDAYSYDPLI 375
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
A R + + A L+ + G P Y V+ + GK + E F K+ +
Sbjct: 376 AAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCS 435
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN+ +Y + + LW G A+ + +M GI Y + CLC G +EA
Sbjct: 436 PNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFEL 495
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + P VV+Y ++ + I++A + M N C PN T ++++
Sbjct: 496 LVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGF 555
Query: 243 HGLFEEAMKLFQEMA 257
G EAM+L ++
Sbjct: 556 AGYRAEAMELANDLV 570
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 25/173 (14%)
Query: 5 PDTVAYRSIAVTL---GQAGHIKELFDVIDSMRSLPKKK---------FKTG-------- 44
PD V Y ++ TL G+A E+F + + P + +G
Sbjct: 401 PDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHM 460
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
LE ++PD + YN++++ R + AF +L ++ PS TY +V+ +
Sbjct: 461 ILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVL--LGF 518
Query: 105 CGKYNL---VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
C + + + V PN Y VL+ + G EA+ D+ R
Sbjct: 519 CKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVR 571
>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
Length = 702
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 146/328 (44%), Gaps = 32/328 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ L + + D++D M + ++ D V YNA+L
Sbjct: 191 PDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYG---------------VQADAVCYNALL 235
Query: 65 NACVRRKQWEGAFWVLQQL-KQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSY 122
+ C R +E A V +QL + G P+ TY ++++ + G++ E + R + ++
Sbjct: 236 SGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMANNH 295
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+ + Y +L++ L R G D A DM + G+V ++Y L + C G+ EA
Sbjct: 296 QADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWK 355
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--FCSPNLVTCNIMVKAY 240
D + + +Y + + LDSG + A + Q++N CSP+ VT ++
Sbjct: 356 FWDST-GFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGL 414
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
E+G A E+ ED+ + E D++++++M++ + R D VY
Sbjct: 415 CENGYANRAF----EILEDARNSGEEL--------DVFSYSSMINRFCKDGRTHDANEVY 462
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKV 328
K M+ G N+ + +I R K+
Sbjct: 463 KNMVKDGCKPNSHVYNALINGFCRVSKI 490
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 130/309 (42%), Gaps = 29/309 (9%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S PD V + ++ L + G+ F++++ R+ + E D+ Y+
Sbjct: 399 SCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGE---------------ELDVFSYS 443
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN-LVYEFFRKVQK 120
+++N + + A V + + + G KP++ Y ++ K N + +
Sbjct: 444 SMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSN 503
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
P + Y L++ L + K EA S ++M RG Y L R LC K + A
Sbjct: 504 GCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVA 563
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKA 239
L D+I + V+ + LI +G + A I+ +MK CSPNLVT N ++
Sbjct: 564 LRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDG 623
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ E G ++A L+ + ++ + PDI T+NT + + R + L+
Sbjct: 624 FYEIGSIDKAASLWTAILDNG------------LKPDIVTYNTRIKGLCSCNRTPEGVLL 671
Query: 300 YKRMLHHGL 308
+L G+
Sbjct: 672 LNEVLATGI 680
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 110/289 (38%), Gaps = 22/289 (7%)
Query: 48 RWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ-GQKPSATTYGLVMEVMLACG 106
R PR + VL+A R + A + L G P ++ +++ +
Sbjct: 76 RHRPRFSESAAL--VVLSAFSRALMPDAALAAFRDLPSLLGCNPGVRSHNTLLDAFVRAR 133
Query: 107 KYNLVYEFFRKVQ-----KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
+Y+ FF + + PN Y +++ +L G D AVS + RRG+
Sbjct: 134 RYSDADAFFASLSHGAFGRRIAPNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDR 193
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L L + + AL +D++ + V Y L+ C +G + A ++ Q
Sbjct: 194 VTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQ 253
Query: 222 M--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
+ SPNL T +M+ + G F+EA +++ M +++ D T
Sbjct: 254 LVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQ------------ADTVT 301
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+ ++ D VY M+ GL + + +I G+
Sbjct: 302 YGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRT 350
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/170 (20%), Positives = 80/170 (47%), Gaps = 1/170 (0%)
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
T E + +PDI Y +++ R K+ + A + ++ G + + +++ + +
Sbjct: 532 TKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCS 591
Query: 105 CGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK + + + ++ +K+ PN + Y L++ + G D+A S + G+
Sbjct: 592 AGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVT 651
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQ 213
Y + LCS + E ++ ++++ P V++++ L++A + G IQ
Sbjct: 652 YNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSILVRAVIKYGPIQ 701
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 17/158 (10%)
Query: 194 PLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-----SPNLVTCNIMVKAYLEHGLFEE 248
P V S+ L+ A + + +A F + + +PNL T NI++++ G +
Sbjct: 117 PGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNLQTYNIILRSLCARGDVDR 176
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
A+ LF + ++ V PD T++T++ A + D+ + M ++G+
Sbjct: 177 AVSLFSSL------------RRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGV 224
Query: 309 HFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
+A + ++ R G E WE L R +P
Sbjct: 225 QADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASP 262
>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like isoform 1 [Vitis vinifera]
Length = 610
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/339 (25%), Positives = 152/339 (44%), Gaps = 44/339 (12%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFK---TGTL----------- 46
M+ PD V Y +I TL +G +K+ +V+D R L K+ + T T+
Sbjct: 210 MNVAPDVVTYNTILRTLCDSGKLKQAMEVLD--RQLQKECYPDVITYTILIEATCKESGV 267
Query: 47 --------ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLV 98
E + +PD+V YN ++N + + + A L + G +P+ T+ ++
Sbjct: 268 GQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNII 327
Query: 99 MEVMLACGKY----NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
+ M + G++ L+ + RK P+ + + +L+N L R+G A+ +E M
Sbjct: 328 LRSMCSTGRWMDAEKLLSDMLRK---GCSPSVVTFNILINFLCRQGLLGRAIDILEKMPM 384
Query: 155 RGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQN 214
G ++ Y L C K + A+ +D + P +V+Y L+ A G +
Sbjct: 385 HGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDV 444
Query: 215 AAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV 273
A I NQ+ + CSP L+T N ++ + G E A+KL EM +KGL
Sbjct: 445 AVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMR-----------RKGLK 493
Query: 274 IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
PDI T+++++ + E + D+ + + G+ NA
Sbjct: 494 -PDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNA 531
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/325 (20%), Positives = 141/325 (43%), Gaps = 32/325 (9%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD++ YN +++ + + + A VL ++ P TY ++ + GK E
Sbjct: 182 PDVITYNVLISGYCKSGEIDNALQVLDRMNVA---PDVVTYNTILRTLCDSGKLKQAMEV 238
Query: 115 F-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
R++QK P+ + Y +L+ +E +A+ +++M +G Y L +C
Sbjct: 239 LDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICK 298
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+ +EA+ ++ + +P V+++ ++++ +G +A + + M + CSP++VT
Sbjct: 299 EGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVT 358
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDS------------------NHINREYDKKGLVI 274
NI++ GL A+ + ++M ++R + +++
Sbjct: 359 FNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMV 418
Query: 275 -----PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
PDI T+NT+L A + + D + ++ G + +I S+ GK E
Sbjct: 419 SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTE 478
Query: 330 ----LLEITWEHLARADRITPPALI 350
LL+ + D IT +L+
Sbjct: 479 RAIKLLDEMRRKGLKPDIITYSSLV 503
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 115/259 (44%), Gaps = 15/259 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDI+ +++ R + + A WV++ L+Q G P TY +++ G+ + +
Sbjct: 147 PDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQV 206
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
++ + P+ + Y ++ TL GK +A+ ++ ++ Y L C
Sbjct: 207 LDRMNVA--PDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKE 264
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
+A+ +D++ +KP VV+Y LI G + A N M ++ C PN++T
Sbjct: 265 SGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITH 324
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
NI++++ G + +A KL +M +KG P + TFN +++ +
Sbjct: 325 NIILRSMCSTGRWMDAEKLLSDML-----------RKGCS-PSVVTFNILINFLCRQGLL 372
Query: 294 DDLELVYKRMLHHGLHFNA 312
+ ++M HG N+
Sbjct: 373 GRAIDILEKMPMHGCTPNS 391
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 4/178 (2%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDIV YN +L A + + + A +L QL +G P TY V++ + GK +
Sbjct: 424 PDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKL 483
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++ K P+ + Y LV+ L REGK DEA+ D+E GI +A Y + LC
Sbjct: 484 LDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCK 543
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV 231
+ + + A+ + + KP +YT LI+ G + A + N++ CS LV
Sbjct: 544 SRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNEL---CSRGLV 598
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 16/199 (8%)
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
V + IP+ + L+ R GKT +A +E +E+ G V Y L C +G+
Sbjct: 141 VYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEI 200
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCSPNLVTCNIM 236
+ AL +D++ VA P VV+Y +++ DSG ++ A + + Q++ C P+++T I+
Sbjct: 201 DNALQVLDRM-NVA--PDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTIL 257
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
++A + +AMKL EM + PD+ T+N +++ E R D+
Sbjct: 258 IEATCKESGVGQAMKLLDEMRNKGSK------------PDVVTYNVLINGICKEGRLDEA 305
Query: 297 ELVYKRMLHHGLHFNAKRH 315
M +G N H
Sbjct: 306 IKFLNNMPSYGCQPNVITH 324
>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/337 (23%), Positives = 148/337 (43%), Gaps = 40/337 (11%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSM--------------------RSLPKKK 40
MS PD V Y +I +L +G +K+ +V+D M R +
Sbjct: 198 MSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQ 257
Query: 41 FKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
E D PD+V YN ++N + + + A L + G +P+ T+ +++
Sbjct: 258 AMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILR 317
Query: 101 VMLACGKY----NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
M + G++ L+ + RK + P+ + + +L+N L R+G A+ +E M + G
Sbjct: 318 SMCSTGRWMDAEKLLADMLRK---GFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHG 374
Query: 157 IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
++ Y L C K + A+ ++++ P +V+Y ++ A G +++A
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAV 434
Query: 217 YIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
I NQ+ + CSP L+T N ++ + G +A+KL EM R D K P
Sbjct: 435 EILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEM--------RAKDLK----P 482
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
D T+++++ + E + D+ + G+ NA
Sbjct: 483 DTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNA 519
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/355 (22%), Positives = 150/355 (42%), Gaps = 36/355 (10%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
+ PD + Y + +AG I V+D M + PD+V YN
Sbjct: 167 GAVPDVITYNVMISGYCKAGEINNALSVLDRMS------------------VSPDVVTYN 208
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-K 120
+L + + + A VL ++ Q+ P TY +++E + +++ +
Sbjct: 209 TILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDR 268
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
P+ + Y VLVN + +EG+ DEA+ + DM G + + + R +CS G+ +A
Sbjct: 269 GCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDA 328
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
+ + + P VV++ LI G + A I +M K+ C PN ++ N ++
Sbjct: 329 EKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHG 388
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ + + A++ + M + PDI T+NTML A + + +D +
Sbjct: 389 FCKEKKMDRAIEYLERMVSRGCY------------PDIVTYNTMLTALCKDGKVEDAVEI 436
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEITWEHLARADRITPPALI 350
++ G + +I ++AGK ++LL+ + D IT +L+
Sbjct: 437 LNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLV 491
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 85/181 (46%), Gaps = 2/181 (1%)
Query: 46 LERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
LER R PDIV YN +L A + + E A +L QL +G P TY V++ +
Sbjct: 402 LERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAK 461
Query: 105 CGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK + +++ K P+ + Y LV L REGK DEA+ + ER G+ +A
Sbjct: 462 AGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVT 521
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ + LC + + A+ + + KP SYT LI+ G + A + N++
Sbjct: 522 FNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELC 581
Query: 224 N 224
N
Sbjct: 582 N 582
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 16/194 (8%)
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P+ + L+ R GKT +A +E +E G V Y + C AG+ AL
Sbjct: 134 VPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALS 193
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+D++ + P VV+Y ++++ DSG ++ A + ++M + C P+++T I+++A
Sbjct: 194 VLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATC 250
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+AMKL EM + PD+ T+N +++ E R D+
Sbjct: 251 RDSGVGQAMKLLDEMRDRG------------CTPDVVTYNVLVNGICKEGRLDEAIKFLN 298
Query: 302 RMLHHGLHFNAKRH 315
M G N H
Sbjct: 299 DMPSSGCQPNVITH 312
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/176 (19%), Positives = 76/176 (43%), Gaps = 21/176 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLP---------------KKKFKTGTL-- 46
YPD V Y ++ L + G +++ ++++ + S K KTG
Sbjct: 411 YPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIK 470
Query: 47 ---ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
E L+PD + Y++++ R + + A + ++ G +P+A T+ +M +
Sbjct: 471 LLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLC 530
Query: 104 ACGKYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ + +F + + P +Y +L+ L EG EA+ + ++ +G++
Sbjct: 531 KTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGLM 586
>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74900, mitochondrial; AltName: Full=Protein
ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
Precursor
gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
Length = 482
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 141/303 (46%), Gaps = 30/303 (9%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+ D ++ +I L ++ +++ +++ ++R R D V YN +
Sbjct: 158 FQDLASFNTILDVLCKSKRVEKAYELFRALRG----------------RFSVDTVTYNVI 201
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
LN K+ A VL+++ ++G P+ TTY +++ G+ +EFF +++K
Sbjct: 202 LNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDC 261
Query: 124 P-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+ + Y +V+ G+ A + ++M R G++ S A Y + + LC E A++
Sbjct: 262 EIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVV 321
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYL 241
+++ + +P V +Y LI+ +G + +M+N C PN T N+M++ Y
Sbjct: 322 MFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYS 381
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
E E+A+ LF++M G +P++ T+N ++ KR +D+ + K
Sbjct: 382 ECSEVEKALGLFEKMGS------------GDCLPNLDTYNILISGMFVRKRSEDMVVAGK 429
Query: 302 RML 304
+L
Sbjct: 430 LLL 432
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 120/266 (45%), Gaps = 21/266 (7%)
Query: 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGK 141
+ + G ++ +++V+ + YE FR ++ + + + Y V++N +
Sbjct: 151 NMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKR 210
Query: 142 TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA---LMQMDKI-CKVANKPLVV 197
T +A+ +++M RGI + Y + + AG+ A ++M K C++ VV
Sbjct: 211 TPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEID----VV 266
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+YT ++ +G I+ A +F++M + P++ T N M++ + E A+ +F+EM
Sbjct: 267 TYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEM 326
Query: 257 AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316
+ R Y+ P++ T+N ++ + E + +RM + G N + +
Sbjct: 327 ------VRRGYE------PNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYN 374
Query: 317 RMILDASRAGKVELLEITWEHLARAD 342
MI S +VE +E + D
Sbjct: 375 MMIRYYSECSEVEKALGLFEKMGSGD 400
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 47/262 (17%), Positives = 103/262 (39%), Gaps = 28/262 (10%)
Query: 92 ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVE 150
A+++ L +++ + V+ +++ I P+ + ++ GK D+AV
Sbjct: 91 ASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFL 150
Query: 151 DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA-CLDS 209
+M G A + + LC + + E+A ++ + + V+Y ++ CL
Sbjct: 151 NMHEHGCFQDLASFNTILDVLCKSKRVEKA-YELFRALRGRFSVDTVTYNVILNGWCLIK 209
Query: 210 GNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN----- 264
+ + ++ +PNL T N M+K + G A + F EM + I+
Sbjct: 210 RTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYT 269
Query: 265 -------------------REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
E ++G V+P + T+N M+ + ++ ++++ M+
Sbjct: 270 TVVHGFGVAGEIKRARNVFDEMIREG-VLPSVATYNAMIQVLCKKDNVENAVVMFEEMVR 328
Query: 306 HGLHFNAKRHLRMILDASRAGK 327
G N + +I AG+
Sbjct: 329 RGYEPNVTTYNVLIRGLFHAGE 350
>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
[Arabidopsis thaliana]
gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
[Arabidopsis thaliana]
Length = 735
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 131/288 (45%), Gaps = 14/288 (4%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPD +N ++ + A ++ ++ + G +P TY ++ + G +L +
Sbjct: 155 EPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALD 214
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
RK+++ + + Y ++++L R+G D A+S ++ME +GI S Y L R LC
Sbjct: 215 LLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC 274
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
AGK + + + + P V+++ L+ + G +Q A ++ +M SPN++
Sbjct: 275 KAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNII 334
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ Y EA + M + PDI TF +++ K
Sbjct: 335 TYNTLMDGYCMQNRLSEANNMLDLMVRNKCS------------PDIVTFTSLIKGYCMVK 382
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
R DD V++ + GL NA + ++ ++GK++L E ++ +
Sbjct: 383 RVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMV 430
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 141/327 (43%), Gaps = 29/327 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y SI + ++G D++ M ER ++ D+ Y+ ++
Sbjct: 191 PDVVTYNSIVNGICRSGDTSLALDLLRKME------------ER---NVKADVFTYSTII 235
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
++ R + A + ++++ +G K S TY ++ + GK+N + V + +
Sbjct: 236 DSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIV 295
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + VL++ +EGK EA ++M RGI + Y L C + EA
Sbjct: 296 PNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNM 355
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQMKNFCSPNLVTCNIMVKAYLE 242
+D + + P +V++T LI+ + + +F N K N VT +I+V+ + +
Sbjct: 356 LDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQ 415
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + A +LFQEM V+PD+ T+ +LD + + +++
Sbjct: 416 SGKIKLAEELFQEMVSHG------------VLPDVMTYGILLDGLCDNGKLEKALEIFED 463
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + + +I + GKVE
Sbjct: 464 LQKSKMDLGIVMYTTIIEGMCKGGKVE 490
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 115/259 (44%), Gaps = 14/259 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P +V ++ +A R KQ+ +QL+ G + T +++ C K Y
Sbjct: 86 PSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 145
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
KV K Y P+ + L+ L+ EGK EAV V+ M G Y + +C
Sbjct: 146 LGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICR 205
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVT 232
+G AL + K+ + K V +Y+ +I + G I A +F +M+ ++VT
Sbjct: 206 SGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVT 265
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N +V+ + G + + L ++M ++RE ++P++ TFN +LD E +
Sbjct: 266 YNSLVRGLCKAGKWNDGALLLKDM------VSRE------IVPNVITFNVLLDVFVKEGK 313
Query: 293 WDDLELVYKRMLHHGLHFN 311
+ +YK M+ G+ N
Sbjct: 314 LQEANELYKEMITRGISPN 332
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 103/207 (49%), Gaps = 2/207 (0%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
+ PDIV + +++ K+ + V + + ++G +A TY ++++ GK L
Sbjct: 363 KCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLA 422
Query: 112 YEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
E F++ V +P+ + Y +L++ L GK ++A+ ED+++ + +Y +
Sbjct: 423 EELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG 482
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
+C GK E+A + KP V++YT +I G++ A + +M ++ +PN
Sbjct: 483 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 542
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEM 256
T N +++A+L G + KL +EM
Sbjct: 543 DCTYNTLIRAHLRDGDLTASAKLIEEM 569
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 104/236 (44%), Gaps = 14/236 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P+I+ YN +++ + + A +L + + P T+ +++ + +
Sbjct: 329 ISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGM 388
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ FR + K + NA+ Y +LV + GK A ++M G++ Y L L
Sbjct: 389 KVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGL 448
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C GK E+AL + + K +V YT +I+ G +++A +F + PN+
Sbjct: 449 CDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNV 508
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+T +M+ + G EA L ++M ED N P+ T+NT++ A
Sbjct: 509 MTYTVMISGLCKKGSLSEANILLRKMEEDGNA------------PNDCTYNTLIRA 552
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 16/159 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y + L G +++ ++ + L K K G IV+Y ++
Sbjct: 436 PDVMTYGILLDGLCDNGKLEKALEIFED---LQKSKMDLG------------IVMYTTII 480
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ + E A+ + L +G KP+ TY +++ + G + RK+++
Sbjct: 481 EGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNA 540
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
PN Y L+ R+G + +E+M+ G A+
Sbjct: 541 PNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADAS 579
>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
Length = 818
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 125/278 (44%), Gaps = 27/278 (9%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPDIV YN ++NA + A +L L G KP A TY V++ + ++ V E
Sbjct: 318 EPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEE 377
Query: 114 FFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++ + P+ + + +V +L ++G D A+ V+ M G V Y + LC
Sbjct: 378 LLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLC 437
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLV 231
G+ ++A+ + ++ KP ++YT +++ + + A + +M + C P+ V
Sbjct: 438 DVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEV 497
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAE------------------------DSNHINREY 267
T N +V + + GL + A+++ ++M+E D+ + +
Sbjct: 498 TFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDL 557
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
G PDI TFNT+L RW+D E + M+
Sbjct: 558 QSCG-CKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMR 594
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 128/284 (45%), Gaps = 29/284 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + +I +L Q G + +V+D M + G + DIV Y+++L
Sbjct: 389 PDEVTFNTIVTSLCQQGLVDRAIEVVDHMS-------EHGCVA--------DIVTYSSIL 433
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + + A +L +LK G KP Y V++ + + ++ E ++ S P
Sbjct: 434 DGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCP 493
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + + +V +L ++G D A+ VE M G Y + LC+ ++A+
Sbjct: 494 PDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMEL 553
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQMKNFCSPNLVTCNIMVKAYLE 242
+ + KP +V++ L++ ++A + N M++ C P+ +T N ++ + +
Sbjct: 554 LSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQ 613
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
GL +A++ + MAE+ +P+ T++ ++DA
Sbjct: 614 KGLLTQAIETLKIMAENG------------CVPNSSTYSIVVDA 645
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 134/313 (42%), Gaps = 36/313 (11%)
Query: 16 TLGQAGHIKELFDVIDSMRS--------------LPKKKFKTGTL---ERWDPRLEPD-- 56
+L Q G I E + DSM S L K+ G + ER L P
Sbjct: 159 SLVQRGEIDEALVLFDSMASGGGRNCPPVVPCNILIKRLCSDGRVSDAERVFAALGPSAT 218
Query: 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEFF 115
+V YN ++N R + E A ++ + P T+ ++ + G+ + + F
Sbjct: 219 VVTYNTMVNGYCRAGRIEDARRLINGMPF---PPDTFTFNPLIRALCVRGRIPDALAVFD 275
Query: 116 RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
+ + P+ + Y +L++ +E +A++ +++M +G Y L +C+ G
Sbjct: 276 DMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEG 335
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCN 234
+EAL + + KP V+YT ++++ S + + +M N C+P+ VT N
Sbjct: 336 DVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFN 395
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
+V + + GL + A+++ M+E + DI T++++LD R D
Sbjct: 396 TIVTSLCQQGLVDRAIEVVDHMSEHG------------CVADIVTYSSILDGLCDVGRVD 443
Query: 295 DLELVYKRMLHHG 307
D + R+ +G
Sbjct: 444 DAVELLSRLKSYG 456
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 110/273 (40%), Gaps = 22/273 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKK----KFKT-----GTLERWD----- 50
PD V Y I L I + +++ ++S K F T ++RW+
Sbjct: 529 PDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQL 588
Query: 51 ------PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
PD + +N V+ + ++ A L+ + + G P+++TY +V++ +L
Sbjct: 589 MANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLK 648
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
GK E + P+ + Y +++ L + GK +EA+ + M G+ Y
Sbjct: 649 AGKAQAALELLSGMTNG-TPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTY 707
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG-LIQACLDSGNIQNAAYIFNQMK 223
LA +C + A+ + ++ P Y L+ C D + +
Sbjct: 708 RSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVS 767
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+ C P+ T I+++A GL +EA +L +
Sbjct: 768 SGCMPDESTYVILLEALAYGGLLDEAKRLLASL 800
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/354 (19%), Positives = 141/354 (39%), Gaps = 34/354 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSL---PKKKFKTGTL------ERWDPRLE-- 54
D V Y SI L G + + +++ ++S P T L E+W+ E
Sbjct: 425 DIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELM 484
Query: 55 ---------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
PD V +N V+ + ++ + A V++Q+ + G P TY +++ +
Sbjct: 485 AEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNE 544
Query: 106 GKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
+ E +Q P+ + + L+ L + ++A + +M R +
Sbjct: 545 SCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTF 604
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
+ LC G +A+ + + + P +Y+ ++ A L +G Q A + + M N
Sbjct: 605 NTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTN 664
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
+P+L+T N ++ + G EEA+ L + M + + PD T+ ++
Sbjct: 665 G-TPDLITYNTVISNLTKAGKMEEALDLLRVMVSNG------------LCPDTTTYRSLA 711
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
E D + +R+ GL + + ++L R + +L + H+
Sbjct: 712 YGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHM 765
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 27/189 (14%)
Query: 210 GNIQNAAYIFNQMKNFCS---PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI--- 263
G I A +F+ M + P +V CNI++K G +A ++F + + +
Sbjct: 164 GEIDEALVLFDSMASGGGRNCPPVVPCNILIKRLCSDGRVSDAERVFAALGPSATVVTYN 223
Query: 264 ---------NREYDKKGLV-----IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH 309
R D + L+ PD +TFN ++ A R D V+ MLH G
Sbjct: 224 TMVNGYCRAGRIEDARRLINGMPFPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCS 283
Query: 310 FNAKRHLRMILDAS--RAGKVELLEITWEHLARA---DRITPPALIKERFCNRLENKDYG 364
+ + ++LDA+ +G + + + E A+ D +T LI CN + +
Sbjct: 284 PSVVTY-SILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINA-MCNEGDVDEAL 341
Query: 365 SAISCLVSH 373
+ +S L SH
Sbjct: 342 NILSNLPSH 350
Score = 44.7 bits (104), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 18/188 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P++ Y + L +AG + +++ M GT PD++ YN V+
Sbjct: 634 PNSSTYSIVVDALLKAGKAQAALELLSGM--------TNGT---------PDLITYNTVI 676
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + E A +L+ + G P TTY + + + R+VQ + +
Sbjct: 677 SNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLS 736
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y ++ R+ +TD A+ M G + + Y L L G +EA
Sbjct: 737 PDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRL 796
Query: 184 MDKICKVA 191
+ +C +
Sbjct: 797 LASLCSLG 804
>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 602
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 149/330 (45%), Gaps = 44/330 (13%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFK---TGTL----------- 46
MS PD V Y +I +L +G +KE +V+D R L ++ + T T+
Sbjct: 202 MSVAPDVVTYNTILRSLCDSGKLKEAMEVLD--RQLQRECYPDVITYTILIEATCNDSGV 259
Query: 47 --------ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLV 98
E +PD+V YN ++N + + + A L + G KP+ T+ ++
Sbjct: 260 GQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNII 319
Query: 99 MEVMLACGKY----NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
+ M + G++ L+ + R K P+ + + +L+N L R+ A+ +E M +
Sbjct: 320 LRSMCSTGRWMDAERLLSDMLR---KGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPK 376
Query: 155 RGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQN 214
G V ++ Y L C K + A+ ++ + P +V+Y L+ A G +
Sbjct: 377 HGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDA 436
Query: 215 AAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV 273
A I NQ+ + CSP L+T N ++ + G E A++L +EM +KGL
Sbjct: 437 AVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMR-----------RKGLK 485
Query: 274 IPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
PDI T++T+L E + D+ ++ M
Sbjct: 486 -PDIITYSTLLRGLGREGKVDEAIKIFHDM 514
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/326 (20%), Positives = 142/326 (43%), Gaps = 32/326 (9%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD++ YN ++ + + + A VL+++ P TY ++ + GK E
Sbjct: 174 PDVITYNVLIGGYCKSGEIDKALEVLERMSVA---PDVVTYNTILRSLCDSGKLKEAMEV 230
Query: 115 F-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
R++Q+ P+ + Y +L+ + +A+ +++M ++G Y L +C
Sbjct: 231 LDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICK 290
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+ +EA+ ++ + KP V+++ ++++ +G +A + + M + CSP++VT
Sbjct: 291 EGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVT 350
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAE------------------DSNHINREYDKKGLVI 274
NI++ L A+ + ++M + ++R + +++
Sbjct: 351 FNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMV 410
Query: 275 -----PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK-- 327
PDI T+NT+L A + + D + ++ G + +I ++ GK
Sbjct: 411 SRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTE 470
Query: 328 --VELLEITWEHLARADRITPPALIK 351
VELLE + D IT L++
Sbjct: 471 YAVELLEEMRRKGLKPDIITYSTLLR 496
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 1/155 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDIV YN +L A + + + A +L QL +G P TY V++ + GK E
Sbjct: 416 PDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVEL 475
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++ K P+ + Y L+ L REGK DEA+ DME I SA Y + LC
Sbjct: 476 LEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCK 535
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
A + A+ + + + KP +YT LI+ D
Sbjct: 536 AQQTSRAIDFLAYMVEKGCKPTEATYTILIEGIAD 570
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 121/279 (43%), Gaps = 23/279 (8%)
Query: 38 KKKFKTGTLERWDPRLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK 89
+K + G LE LE PD++ +++ R + + A +++ L+ G
Sbjct: 114 RKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAV 173
Query: 90 PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAV 149
P TY +++ G+ + E ++ S P+ + Y ++ +L GK EA+ +
Sbjct: 174 PDVITYNVLIGGYCKSGEIDKALEVLERM--SVAPDVVTYNTILRSLCDSGKLKEAMEVL 231
Query: 150 EDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS 209
+ +R Y L C+ +A+ +D++ K KP VV+Y LI
Sbjct: 232 DRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKE 291
Query: 210 GNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD 268
G + A N M ++ C PN++T NI++++ G + +A +L +M
Sbjct: 292 GRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDML----------- 340
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
+KG P + TFN +++ ++ V ++M HG
Sbjct: 341 RKGCS-PSVVTFNILINFLCRKRLLGRAIDVLEKMPKHG 378
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 96/201 (47%), Gaps = 16/201 (7%)
Query: 116 RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
R + + IP+ +A L+ R GKT +A +E +E G V Y L C +G
Sbjct: 131 RMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSG 190
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCSPNLVTCN 234
+ ++AL ++++ + P VV+Y ++++ DSG ++ A + + Q++ C P+++T
Sbjct: 191 EIDKALEVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYT 247
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
I+++A +AMKL EM KKG PD+ T+N +++ E R D
Sbjct: 248 ILIEATCNDSGVGQAMKLLDEMR-----------KKGCK-PDVVTYNVLINGICKEGRLD 295
Query: 295 DLELVYKRMLHHGLHFNAKRH 315
+ M +G N H
Sbjct: 296 EAIKFLNNMPSYGCKPNVITH 316
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 8/190 (4%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ + YN +L+ + K+ + A L+ + +G P TY ++ + GK + E
Sbjct: 381 PNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEI 440
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ K P + Y +++ L + GKT+ AV +E+M R+G+ Y L R L
Sbjct: 441 LNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGR 500
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYT----GLIQACLDSGNIQNAAYIFNQMKNFCSPN 229
GK +EA+ + ++ KP V+Y GL +A S I AY+ ++ C P
Sbjct: 501 EGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYM---VEKGCKPT 557
Query: 230 LVTCNIMVKA 239
T I+++
Sbjct: 558 EATYTILIEG 567
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 15/96 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ LG+ G + E + M L ++P V YNA++
Sbjct: 486 PDIITYSTLLRGLGREGKVDEAIKIFHDMEGLS---------------IKPSAVTYNAIM 530
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
+ +Q A L + ++G KP+ TY +++E
Sbjct: 531 LGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIE 566
>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 598
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/337 (23%), Positives = 150/337 (44%), Gaps = 40/337 (11%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTL-- 46
MS PD V Y +I +L +G +K+ +V+D M L + + +
Sbjct: 198 MSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGH 257
Query: 47 ------ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
E D PD+V YN ++N + + + A L + G +P+ T+ +++
Sbjct: 258 AMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILR 317
Query: 101 VMLACGKY----NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
M + G++ L+ + RK + P+ + + +L+N L R+G A+ +E M + G
Sbjct: 318 SMCSTGRWMDAEKLLADMLRK---GFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHG 374
Query: 157 IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
++ Y L C K + A+ ++++ P +V+Y ++ A G +++A
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAV 434
Query: 217 YIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
I NQ+ + CSP L+T N ++ + G +A+KL EM R D K P
Sbjct: 435 EILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEM--------RAKDLK----P 482
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
D T+++++ + E + D+ + G+ NA
Sbjct: 483 DTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNA 519
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/355 (21%), Positives = 150/355 (42%), Gaps = 36/355 (10%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
+ PD + Y + +AG I V+D M + PD+V YN
Sbjct: 167 GAVPDVITYNVMISGYCKAGEINNALSVLDRMS------------------VSPDVVTYN 208
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-K 120
+L + + + A VL ++ Q+ P TY +++E + +++ +
Sbjct: 209 TILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDR 268
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
P+ + Y VLVN + +EG+ DEA+ + DM G + + + R +CS G+ +A
Sbjct: 269 GCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDA 328
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
+ + + P VV++ LI G + A I +M ++ C PN ++ N ++
Sbjct: 329 EKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHG 388
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ + + A++ + M + PDI T+NTML A + + +D +
Sbjct: 389 FCKEKKMDRAIEYLERMVSRGCY------------PDIVTYNTMLTALCKDGKVEDAVEI 436
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEITWEHLARADRITPPALI 350
++ G + +I ++AGK ++LL+ + D IT +L+
Sbjct: 437 LNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLV 491
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 86/181 (47%), Gaps = 2/181 (1%)
Query: 46 LERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
LER R PDIV YN +L A + + E A +L QL +G P TY V++ +
Sbjct: 402 LERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAK 461
Query: 105 CGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK + +++ K P+ + Y LV L REGK DEA+ + ER GI +A
Sbjct: 462 AGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVT 521
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ + LC + + + A+ + + KP SYT LI+ G + A + N++
Sbjct: 522 FNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELC 581
Query: 224 N 224
N
Sbjct: 582 N 582
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 94/216 (43%), Gaps = 17/216 (7%)
Query: 102 MLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
M+ G+ ++F V +P+ + L+ R GKT +A +E +E G V
Sbjct: 112 MVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPD 171
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y + C AG+ AL +D++ + P VV+Y ++++ DSG ++ A + +
Sbjct: 172 VITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLD 228
Query: 221 QM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
+M + C P+++T I+++A AMKL EM + PD+ T
Sbjct: 229 RMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRG------------CTPDVVT 276
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
+N +++ E R D+ M G N H
Sbjct: 277 YNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITH 312
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 77/176 (43%), Gaps = 21/176 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLP---------------KKKFKTGTL-- 46
YPD V Y ++ L + G +++ ++++ + S K KTG
Sbjct: 411 YPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIK 470
Query: 47 ---ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
E L+PD + Y++++ R + + A + ++ G +P+A T+ +M +
Sbjct: 471 LLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLC 530
Query: 104 ACGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ + +F + + PN +Y +L+ L EG EA+ + ++ +G++
Sbjct: 531 KSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLM 586
>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
Length = 553
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/339 (25%), Positives = 152/339 (44%), Gaps = 44/339 (12%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFK---TGTL----------- 46
M+ PD V Y +I TL +G +K+ +V+D R L K+ + T T+
Sbjct: 153 MNVAPDVVTYNTILRTLCDSGKLKQAMEVLD--RQLQKECYPDVITYTILIEATCKESGV 210
Query: 47 --------ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLV 98
E + +PD+V YN ++N + + + A L + G +P+ T+ ++
Sbjct: 211 GQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNII 270
Query: 99 MEVMLACGKY----NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
+ M + G++ L+ + RK P+ + + +L+N L R+G A+ +E M
Sbjct: 271 LRSMCSTGRWMDAEKLLSDMLRK---GCSPSVVTFNILINFLCRQGLLGRAIDILEKMPM 327
Query: 155 RGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQN 214
G ++ Y L C K + A+ +D + P +V+Y L+ A G +
Sbjct: 328 HGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDV 387
Query: 215 AAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV 273
A I NQ+ + CSP L+T N ++ + G E A+KL EM +KGL
Sbjct: 388 AVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMR-----------RKGLK 436
Query: 274 IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
PDI T+++++ + E + D+ + + G+ NA
Sbjct: 437 -PDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNA 474
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/325 (20%), Positives = 141/325 (43%), Gaps = 32/325 (9%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD++ YN +++ + + + A VL ++ P TY ++ + GK E
Sbjct: 125 PDVITYNVLISGYCKSGEIDNALQVLDRMNVA---PDVVTYNTILRTLCDSGKLKQAMEV 181
Query: 115 F-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
R++QK P+ + Y +L+ +E +A+ +++M +G Y L +C
Sbjct: 182 LDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICK 241
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+ +EA+ ++ + +P V+++ ++++ +G +A + + M + CSP++VT
Sbjct: 242 EGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVT 301
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDS------------------NHINREYDKKGLVI 274
NI++ GL A+ + ++M ++R + +++
Sbjct: 302 FNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMV 361
Query: 275 -----PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
PDI T+NT+L A + + D + ++ G + +I S+ GK E
Sbjct: 362 SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTE 421
Query: 330 ----LLEITWEHLARADRITPPALI 350
LL+ + D IT +L+
Sbjct: 422 RAIKLLDEMRRKGLKPDIITYSSLV 446
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 115/259 (44%), Gaps = 15/259 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDI+ +++ R + + A WV++ L+Q G P TY +++ G+ + +
Sbjct: 90 PDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQV 149
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
++ + P+ + Y ++ TL GK +A+ ++ ++ Y L C
Sbjct: 150 LDRMNVA--PDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKE 207
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
+A+ +D++ +KP VV+Y LI G + A N M ++ C PN++T
Sbjct: 208 SGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITH 267
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
NI++++ G + +A KL +M +KG P + TFN +++ +
Sbjct: 268 NIILRSMCSTGRWMDAEKLLSDML-----------RKGCS-PSVVTFNILINFLCRQGLL 315
Query: 294 DDLELVYKRMLHHGLHFNA 312
+ ++M HG N+
Sbjct: 316 GRAIDILEKMPMHGCTPNS 334
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 4/178 (2%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDIV YN +L A + + + A +L QL +G P TY V++ + GK +
Sbjct: 367 PDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKL 426
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++++ + P+ + Y LV+ L REGK DEA+ D+E GI +A Y + LC
Sbjct: 427 LDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCK 486
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV 231
+ + + A+ + + KP +YT LI+ G + A + N++ CS LV
Sbjct: 487 SRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNEL---CSRGLV 541
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 16/199 (8%)
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
V + IP+ + L+ R GKT +A +E +E+ G V Y L C +G+
Sbjct: 84 VYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEI 143
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCSPNLVTCNIM 236
+ AL +D++ VA P VV+Y +++ DSG ++ A + + Q++ C P+++T I+
Sbjct: 144 DNALQVLDRM-NVA--PDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTIL 200
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
++A + +AMKL EM + PD+ T+N +++ E R D+
Sbjct: 201 IEATCKESGVGQAMKLLDEMRNKGSK------------PDVVTYNVLINGICKEGRLDEA 248
Query: 297 ELVYKRMLHHGLHFNAKRH 315
M +G N H
Sbjct: 249 IKFLNNMPSYGCQPNVITH 267
>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial; Flags: Precursor
Length = 602
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 131/288 (45%), Gaps = 14/288 (4%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPD +N ++ + A ++ ++ + G +P TY ++ + G +L +
Sbjct: 155 EPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALD 214
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
RK+++ + + Y ++++L R+G D A+S ++ME +GI S Y L R LC
Sbjct: 215 LLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC 274
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
AGK + + + + P V+++ L+ + G +Q A ++ +M SPN++
Sbjct: 275 KAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNII 334
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ Y EA + M + PDI TF +++ K
Sbjct: 335 TYNTLMDGYCMQNRLSEANNMLDLMVRNKCS------------PDIVTFTSLIKGYCMVK 382
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
R DD V++ + GL NA + ++ ++GK++L E ++ +
Sbjct: 383 RVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMV 430
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 115/259 (44%), Gaps = 14/259 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P +V ++ +A R KQ+ +QL+ G + T +++ C K Y
Sbjct: 86 PSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 145
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
KV K Y P+ + L+ L+ EGK EAV V+ M G Y + +C
Sbjct: 146 LGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICR 205
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVT 232
+G AL + K+ + K V +Y+ +I + G I A +F +M+ ++VT
Sbjct: 206 SGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVT 265
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N +V+ + G + + L ++M ++RE ++P++ TFN +LD E +
Sbjct: 266 YNSLVRGLCKAGKWNDGALLLKDM------VSRE------IVPNVITFNVLLDVFVKEGK 313
Query: 293 WDDLELVYKRMLHHGLHFN 311
+ +YK M+ G+ N
Sbjct: 314 LQEANELYKEMITRGISPN 332
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 103/207 (49%), Gaps = 2/207 (0%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
+ PDIV + +++ K+ + V + + ++G +A TY ++++ GK L
Sbjct: 363 KCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLA 422
Query: 112 YEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
E F++ V +P+ + Y +L++ L GK ++A+ ED+++ + +Y +
Sbjct: 423 EELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG 482
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
+C GK E+A + KP V++YT +I G++ A + +M ++ +PN
Sbjct: 483 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 542
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEM 256
T N +++A+L G + KL +EM
Sbjct: 543 DCTYNTLIRAHLRDGDLTASAKLIEEM 569
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 122/279 (43%), Gaps = 15/279 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P+I+ YN +++ + + A +L + + P T+ +++ + +
Sbjct: 329 ISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGM 388
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ FR + K + NA+ Y +LV + GK A ++M G++ Y L L
Sbjct: 389 KVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGL 448
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C GK E+AL + + K +V YT +I+ G +++A +F + PN+
Sbjct: 449 CDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNV 508
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T +M+ + G EA L ++M ED N P+ T+NT++ A +
Sbjct: 509 MTYTVMISGLCKKGSLSEANILLRKMEEDGNA------------PNDCTYNTLIRAHLRD 556
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + M G +A ++M++D +G+++
Sbjct: 557 GDLTASAKLIEEMKSCGFSADAS-SIKMVIDMLLSGELD 594
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/274 (19%), Positives = 120/274 (43%), Gaps = 22/274 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL---------------- 46
PD V Y SI + ++G D++ M R++ F T+
Sbjct: 191 PDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISL 250
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E ++ +V YN+++ + +W +L+ + + P+ T+ ++++V +
Sbjct: 251 FKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVK 310
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK E +++ + + PN + Y L++ + + EA + ++ M R
Sbjct: 311 EGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVT 370
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
+ L + C + ++ + I K V+Y+ L+Q SG I+ A +F +M
Sbjct: 371 FTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMV 430
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+ P+++T I++ ++G E+A+++F+++
Sbjct: 431 SHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 464
>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
Length = 385
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 142/326 (43%), Gaps = 39/326 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y S+ L +A E +D+++ M +G + PDI Y ++
Sbjct: 52 PTAVTYNSLISGLCKAERASEAYDLLEEM-------VYSGCI--------PDIFTYTTLI 96
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS--Y 122
+ K+ + A V +QL +G +P TY +++ + G+ + F ++ KS
Sbjct: 97 TGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSC 156
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+PN + Y L++ R GK DEA++ +E M G Y L C + ++A
Sbjct: 157 MPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYD 216
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
++++ + P VV++T L+ + +A +I +M + CSP + T N ++ Y
Sbjct: 217 LLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYC 276
Query: 242 EHGLFEEAMK-LFQEMAEDSN------------HINREYDKKGLVI--------PDIYTF 280
EEA K + +EM N +NR + LV PD+ +
Sbjct: 277 RVNQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMY 336
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHH 306
T++D EK+ D+ VY++ML
Sbjct: 337 TTVIDVLCREKKVDEACRVYRKMLEE 362
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 14/191 (7%)
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P A+ Y L++ L + + EA +E+M G + Y L C + K ++AL
Sbjct: 51 VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALR 110
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAY 240
+++ +P VV+Y+ LI G ++ A +F +M C PN VT N ++ +
Sbjct: 111 VFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGF 170
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
G +EAM L + MAE + PD+ T+ T+++ R DD +
Sbjct: 171 CRMGKMDEAMNLLERMAETGSS------------PDVVTYTTLMNGFCKLARLDDAYDLL 218
Query: 301 KRMLHHGLHFN 311
+M GL N
Sbjct: 219 NQMTRKGLTPN 229
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 102/234 (43%), Gaps = 20/234 (8%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S P+TV Y S+ + G + E ++++ M +TG+ PD+V Y
Sbjct: 155 SCMPNTVTYNSLISGFCRMGKMDEAMNLLERM-------AETGS--------SPDVVTYT 199
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEFFRKVQK 120
++N + + + A+ +L Q+ ++G P+ T+ +M+ + + + V+ +K
Sbjct: 200 TLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRK 259
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
S P Y +++ R + +EA + +E + + + R LC + EA
Sbjct: 260 SCSPTVYTYNTILDGYCRVNQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEA 317
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVT 232
+ +++ + P VV YT +I + A ++ +M + C PN +T
Sbjct: 318 MELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSIT 371
>gi|299471045|emb|CBN78905.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 755
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 142/307 (46%), Gaps = 31/307 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD ++ S ++G KE +++ M P K RL+PD + YN+ +
Sbjct: 388 PDATSFNSAIAACTKSGRWKEALELLKEM---PAK------------RLKPDAISYNSAI 432
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
AC + QWE A + +Q+ +G P+ + + + G++ E R++ +
Sbjct: 433 EACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLT 492
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA-GKCEEALM 182
PN + Y + T + G+ ++A+ + M+ + ++ Y+ A CS G+ +EA+
Sbjct: 493 PNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMT-PDSITYNSAIAACSKRGRWKEAVA 551
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYL 241
+ ++ P V+SYT I A +G + A + QM +PN++T N ++KA
Sbjct: 552 LLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACG 611
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G +E+A+ L +E+ E + V PD+ ++N + AC RW++ + +
Sbjct: 612 RGGEWEKALDLLKELKETA------------VAPDLMSYNLAISACGKRGRWEEALDLLR 659
Query: 302 RMLHHGL 308
M GL
Sbjct: 660 EMPAEGL 666
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/329 (22%), Positives = 138/329 (41%), Gaps = 40/329 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y S+ G+ G KE V+ M + L P+ + YN +
Sbjct: 248 PDAITYNSVITGCGKEGQWKEALSVLTEMSA---------------KGLTPETISYNMAI 292
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
AC R +W+ A VL+Q++ QG P +Y ++ G++ + ++ +
Sbjct: 293 RACGRSGRWKEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVA 352
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + + + G+ ++AV + ++ G+ A + +G+ +EAL
Sbjct: 353 PNTIHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALEL 412
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+ ++ KP +SY I+AC G + A + QM +PN+++ NI ++A E
Sbjct: 413 LKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGE 472
Query: 243 HGLFEEAMKLFQEMAEDS--------NHINREYDKKG---------------LVIPDIYT 279
G ++E ++L ++M N + K G + PD T
Sbjct: 473 RGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSIT 532
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+N+ + AC+ RW + + + M GL
Sbjct: 533 YNSAIAACSKRGRWKEAVALLREMPGQGL 561
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 145/328 (44%), Gaps = 31/328 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD ++Y S G+ G + + ++ M S+ L PD + YN+V+
Sbjct: 213 PDEISYNSAIKACGRGGQWERVIGLLREMPSV---------------GLTPDAITYNSVI 257
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
C + QW+ A VL ++ +G P +Y + + G++ E R+++ +
Sbjct: 258 TGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVT 317
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS-AGKCEEALM 182
P+ ++Y + G+ + +V +++M RG+ + ++++ A C G+ E+A+
Sbjct: 318 PDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPN-TIHFNSAIVACGKGGQWEKAVE 376
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ ++ + P S+ I AC SG + A + +M P+ ++ N ++A
Sbjct: 377 LLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACG 436
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G +E A++L ++M KGL P++ + N + AC RW + + +
Sbjct: 437 KGGQWEMALELRRQM-----------PTKGLT-PNVISSNIAIRACGERGRWQEGLELLR 484
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVE 329
+M GL N + I + G+ E
Sbjct: 485 QMPAQGLTPNVITYNSAIKTCGKGGQWE 512
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 124/257 (48%), Gaps = 19/257 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y S T G+ G ++ D++ M+ L + PD + YN+ +
Sbjct: 493 PNVITYNSAIKTCGKGGQWEKALDLLAKMKELA---------------MTPDSITYNSAI 537
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
AC +R +W+ A +L+++ QG P +Y ++ G++ E R++ K
Sbjct: 538 AACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLT 597
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA-GKCEEALM 182
PN + Y ++ R G+ ++A+ ++++ + V + Y+LA C G+ EEAL
Sbjct: 598 PNVITYNSVIKACGRGGEWEKALDLLKEL-KETAVAPDLMSYNLAISACGKRGRWEEALD 656
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ ++ P V+SYT I+AC G + A + N M + SP + ++ ++A
Sbjct: 657 LLREMPAEGLTPDVISYTSAIRACNAEGEWEKALGLLNLMGAHGVSPTATSYSLAIEACG 716
Query: 242 EHGLFEEAMKLFQEMAE 258
+ G EEA+ L +EMA+
Sbjct: 717 KGGRREEAVCLVREMAQ 733
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/324 (22%), Positives = 144/324 (44%), Gaps = 28/324 (8%)
Query: 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACV 68
+Y + T G+ G ++ ++ +R +P+++ + P++ YN+ + AC
Sbjct: 146 SYTTAITTCGRQGQWEKALEL---LREIPEQEG-----------VSPNVFCYNSAIEACG 191
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNAL 127
QWE A +L+++ + P +Y ++ G++ V R++ P+A+
Sbjct: 192 SGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERVIGLLREMPSVGLTPDAI 251
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
Y ++ +EG+ EA+S + +M +G+ Y R +G+ +EA+ + ++
Sbjct: 252 TYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQM 311
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLF 246
P V+SY I+AC G + + + ++M +PN + N + A + G +
Sbjct: 312 ESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQW 371
Query: 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306
E+A++L RE GL PD +FN+ + AC RW + + K M
Sbjct: 372 EKAVELL-----------REVTALGLT-PDATSFNSAIAACTKSGRWKEALELLKEMPAK 419
Query: 307 GLHFNAKRHLRMILDASRAGKVEL 330
L +A + I + G+ E+
Sbjct: 420 RLKPDAISYNSAIEACGKGGQWEM 443
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 133/294 (45%), Gaps = 18/294 (6%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQL-KQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
Y + C R+ QWE A +L+++ +Q+G P+ Y +E + ++ + R++
Sbjct: 147 YTTAITTCGRQGQWEKALELLREIPEQEGVSPNVFCYNSAIEACGSGDQWEIAVSLLREM 206
Query: 119 -QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+ +P+ ++Y + R G+ + + + +M G+ A Y + G+
Sbjct: 207 ADREVVPDEISYNSAIKACGRGGQWERVIGLLREMPSVGLTPDAITYNSVITGCGKEGQW 266
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIM 236
+EAL + ++ P +SY I+AC SG + A + QM++ +P++++ +
Sbjct: 267 KEALSVLTEMSAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTPDVISYDAA 326
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+KA G +E ++ L EMA V P+ FN+ + AC +W+
Sbjct: 327 IKACGGGGQWETSVDLLDEMAGRG------------VAPNTIHFNSAIVACGKGGQWEKA 374
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLARADRITPPAL 349
+ + + GL +A I +++G+ E LE+ E A+ R+ P A+
Sbjct: 375 VELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAK--RLKPDAI 426
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 120/287 (41%), Gaps = 31/287 (10%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-- 118
A L +W A +L ++K+ G A +Y + G++ E R++
Sbjct: 114 QAALREAATTGKWREALGILDEMKEGGVV-CAHSYTTAITTCGRQGQWEKALELLREIPE 172
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
Q+ PN Y + + + AVS + +M R +V Y + G+ E
Sbjct: 173 QEGVSPNVFCYNSAIEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWE 232
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMV 237
+ + ++ V P ++Y +I C G + A + +M +P ++ N+ +
Sbjct: 233 RVIGLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAI 292
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD--- 294
+A G ++EA+++ ++M V PD+ +++ + AC +W+
Sbjct: 293 RACGRSGRWKEAVEVLRQMESQG------------VTPDVISYDAAIKACGGGGQWETSV 340
Query: 295 DL--ELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELL-EIT 334
DL E+ + + + +HFN+ I+ + G+ VELL E+T
Sbjct: 341 DLLDEMAGRGVAPNTIHFNSA-----IVACGKGGQWEKAVELLREVT 382
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y S+ G+ G ++ D++ ++ + + PD++ YN +
Sbjct: 598 PNVITYNSVIKACGRGGEWEKALDLLKELK---------------ETAVAPDLMSYNLAI 642
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+AC +R +WE A +L+++ +G P +Y + A G++ + +
Sbjct: 643 SACGKRGRWEEALDLLREMPAEGLTPDVISYTSAIRACNAEGEWEKALGLLNLMGAHGVS 702
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
P A +Y + + + G+ +EAV V +M +RG+
Sbjct: 703 PTATSYSLAIEACGKGGRREEAVCLVREMAQRGL 736
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 90/219 (41%), Gaps = 21/219 (9%)
Query: 140 GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS-AGKCEEALMQMDKICKVAN-KPLVV 197
GK EA+ +++M+ G+V A Y A C G+ E+AL + +I + P V
Sbjct: 124 GKWREALGILDEMKEGGVV--CAHSYTTAITTCGRQGQWEKALELLREIPEQEGVSPNVF 181
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
Y I+AC + A + +M + P+ ++ N +KA G +E + L +EM
Sbjct: 182 CYNSAIEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERVIGLLREM 241
Query: 257 AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316
+ PD T+N+++ C E +W + V M GL +
Sbjct: 242 PSVG------------LTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYN 289
Query: 317 RMILDASRAGK----VELLEITWEHLARADRITPPALIK 351
I R+G+ VE+L D I+ A IK
Sbjct: 290 MAIRACGRSGRWKEAVEVLRQMESQGVTPDVISYDAAIK 328
>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
Length = 500
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/350 (24%), Positives = 152/350 (43%), Gaps = 40/350 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y S+ L +A E +D+++ M +G + PDI Y ++
Sbjct: 113 PTAVTYNSLISGLCKAERASEAYDLLEEM-------VYSGCI--------PDIFTYTTLI 157
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS--Y 122
+ K+ + A V +QL +G +P TY +++ + G+ + F ++ KS
Sbjct: 158 TGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSC 217
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+PN + Y L++ R GK DEA++ +E M G Y L C + ++A
Sbjct: 218 MPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYD 277
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
++++ + P VV++T L+ + +A +I +M + CSP + T N ++ Y
Sbjct: 278 LLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYC 337
Query: 242 EHGLFEEAMK-LFQEMAEDSN------------HINREYDKKGLV--------IPDIYTF 280
EEA K + +EM N +NR + LV PD+ +
Sbjct: 338 RANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMY 397
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHH-GLHFNAKRHLRMILDASRAGKVE 329
T++D EK+ D+ VY++ML G N+ + +I AG ++
Sbjct: 398 TTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLD 447
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 117/256 (45%), Gaps = 14/256 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+ Y AV++A + A L+++ + P+ TY ++++ + G+ +
Sbjct: 44 PDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVAL 103
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
K++K +P A+ Y L++ L + + EA +E+M G + Y L C +
Sbjct: 104 LSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKS 163
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVT 232
K ++AL +++ +P VV+Y+ LI G ++ A +F +M C PN VT
Sbjct: 164 KKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVT 223
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ + G +EAM L + MAE + PD+ T+ T+++ R
Sbjct: 224 YNSLISGFCRMGKMDEAMNLLERMAETGSS------------PDVVTYTTLMNGFCKLAR 271
Query: 293 WDDLELVYKRMLHHGL 308
DD + +M GL
Sbjct: 272 LDDAYDLLNQMTRKGL 287
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 76/340 (22%), Positives = 136/340 (40%), Gaps = 66/340 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + L + G +KE D+ M K+G+ P+ V YN+++
Sbjct: 183 PDVVTYSCLIDGLCKEGRLKEAIDLFGRM-------IKSGSCM-------PNTVTYNSLI 228
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ R + + A +L+++ + G P TY +M + + Y+ ++ +K
Sbjct: 229 SGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLT 288
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA--- 180
P+ + + L++ L RE + +AV + +M R+ + Y + C A + EEA
Sbjct: 289 PDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKF 348
Query: 181 -LMQMD-------------KICKVAN----------------KPLVVSYTGLIQACLDSG 210
L +MD +CKV P VV YT +I
Sbjct: 349 MLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREK 408
Query: 211 NIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD 268
+ A ++ +M + C PN +T + ++ G+ + A R Y
Sbjct: 409 KVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRA---------------RGYI 453
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+KG V P+I T+N ++DA R +D + M+ G
Sbjct: 454 EKGCV-PNIGTYNLLIDAFRKANRDEDARELLDDMVQRGF 492
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 118/266 (44%), Gaps = 36/266 (13%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S PD V Y ++ + + + +D+++ M + G L PD+V +
Sbjct: 251 GSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMT-------RKG--------LTPDVVTFT 295
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
++++ R + A +L +++++ P+ TY +++ + +F + +
Sbjct: 296 SLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLE-EMD 354
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
PN +++ +++ L + ++ EA+ VE+ RR +Y + LC K +EA
Sbjct: 355 CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEA- 413
Query: 182 MQMDKICKVANK--------PLVVSYTGLIQACLDSGNIQNA-AYIFNQMKNFCSPNLVT 232
C+V K P ++Y+ LI ++G + A YI + C PN+ T
Sbjct: 414 ------CRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGYI----EKGCVPNIGT 463
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAE 258
N+++ A+ + E+A +L +M +
Sbjct: 464 YNLLIDAFRKANRDEDARELLDDMVQ 489
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 109/246 (44%), Gaps = 20/246 (8%)
Query: 116 RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
+ V K + P+ Y +++ L E + EA +E+M R + + Y L LC G
Sbjct: 36 KMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGG 95
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCN 234
+ +EA+ + K+ K P V+Y LI + A + +M + C P++ T
Sbjct: 96 RVDEAVALLSKMRKKC-VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYT 154
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
++ + + ++A+++F+++ + R + PD+ T++ ++D E R
Sbjct: 155 TLITGFCKSKKSDDALRVFEQL------VARGFR------PDVVTYSCLIDGLCKEGRLK 202
Query: 295 DLELVYKRMLHHGLHF-NAKRHLRMILDASRAGKVE----LLEITWEHLARADRITPPAL 349
+ ++ RM+ G N + +I R GK++ LLE E + D +T L
Sbjct: 203 EAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTL 262
Query: 350 IKERFC 355
+ FC
Sbjct: 263 MNG-FC 267
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 86/203 (42%), Gaps = 12/203 (5%)
Query: 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK 186
+ Y L+ L + + ++A+ + M +G Y + LC + EA +++
Sbjct: 12 VTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEE 71
Query: 187 ICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLF 246
+ P VV+YT LI G + A + ++M+ C P VT N ++ +
Sbjct: 72 MANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERA 131
Query: 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306
EA L +EM IPDI+T+ T++ K+ DD V+++++
Sbjct: 132 SEAYDLLEEMVYSG------------CIPDIFTYTTLITGFCKSKKSDDALRVFEQLVAR 179
Query: 307 GLHFNAKRHLRMILDASRAGKVE 329
G + + +I + G+++
Sbjct: 180 GFRPDVVTYSCLIDGLCKEGRLK 202
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQ-LKQQGQKPSATTYGLVMEVMLACGKYNL 110
R PD+V+Y V++ R K+ + A V ++ L++ G P++ TY ++ + G +
Sbjct: 389 RCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDR 448
Query: 111 VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+ ++K +PN Y +L++ + + ++A ++DM +RG G
Sbjct: 449 ARGY---IEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRGFGG 494
>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
Length = 500
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 142/326 (43%), Gaps = 39/326 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y S+ L +A E +D+++ M +G + PDI Y ++
Sbjct: 113 PTAVTYNSLISGLCKAERASEAYDLLEEM-------VYSGCI--------PDIFTYTTLI 157
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS--Y 122
+ K+ + A V +QL +G +P TY +++ + G+ + F ++ KS
Sbjct: 158 TGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSC 217
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+PN + Y L++ R GK DEA++ +E M G Y L C + ++A
Sbjct: 218 MPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYD 277
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
++++ + P VV++T L+ + +A +I +M + CSP + T N ++ Y
Sbjct: 278 LLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYC 337
Query: 242 EHGLFEEAMK-LFQEMAEDSN------------HINREYDKKGLV--------IPDIYTF 280
EEA K + +EM N +NR + LV PD+ +
Sbjct: 338 RANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMY 397
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHH 306
T++D EK+ D+ VY++ML
Sbjct: 398 TTVIDGLCREKKVDEACRVYRKMLEE 423
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 117/256 (45%), Gaps = 14/256 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+ Y AV++A + A L+++ + P+ TY ++++ + G+ +
Sbjct: 44 PDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVAL 103
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
K++K +P A+ Y L++ L + + EA +E+M G + Y L C +
Sbjct: 104 LSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKS 163
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVT 232
K ++AL +++ +P VV+Y+ LI G ++ A +F +M C PN VT
Sbjct: 164 KKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVT 223
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ + G +EAM L + MAE + PD+ T+ T+++ R
Sbjct: 224 YNSLISGFCRMGKMDEAMNLLERMAETGSS------------PDVVTYTTLMNGFCKLAR 271
Query: 293 WDDLELVYKRMLHHGL 308
DD + +M GL
Sbjct: 272 LDDAYDLLNQMTRKGL 287
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/340 (22%), Positives = 136/340 (40%), Gaps = 66/340 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + L + G +KE D+ M K+G+ P+ V YN+++
Sbjct: 183 PDVVTYSCLIDGLCKEGRLKEAIDLFGRM-------IKSGSCM-------PNTVTYNSLI 228
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ R + + A +L+++ + G P TY +M + + Y+ ++ +K
Sbjct: 229 SGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLT 288
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA--- 180
P+ + + L++ L RE + +AV + +M R+ + Y + C A + EEA
Sbjct: 289 PDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKF 348
Query: 181 -LMQMD-------------KICKVAN----------------KPLVVSYTGLIQACLDSG 210
L +MD +CKV P VV YT +I
Sbjct: 349 MLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREK 408
Query: 211 NIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD 268
+ A ++ +M + C PN +T + +V G+ + A R Y
Sbjct: 409 KVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRA---------------RGYI 453
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+KG V P+I T+N ++DA R +D + M+ G
Sbjct: 454 EKGCV-PNIGTYNLLIDAFRKANRDEDARELLDDMVQRGF 492
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 118/266 (44%), Gaps = 36/266 (13%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S PD V Y ++ + + + +D+++ M + G L PD+V +
Sbjct: 251 GSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMT-------RKG--------LTPDVVTFT 295
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
++++ R + A +L +++++ P+ TY +++ + +F + +
Sbjct: 296 SLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLE-EMD 354
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
PN +++ +++ L + ++ EA+ VE+ RR +Y + LC K +EA
Sbjct: 355 CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEA- 413
Query: 182 MQMDKICKVANK--------PLVVSYTGLIQACLDSGNIQNA-AYIFNQMKNFCSPNLVT 232
C+V K P ++Y+ L+ ++G + A YI + C PN+ T
Sbjct: 414 ------CRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGYI----EKGCVPNIGT 463
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAE 258
N+++ A+ + E+A +L +M +
Sbjct: 464 YNLLIDAFRKANRDEDARELLDDMVQ 489
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 109/246 (44%), Gaps = 20/246 (8%)
Query: 116 RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
+ V K + P+ Y +++ L E + EA +E+M R + + Y L LC G
Sbjct: 36 KMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGG 95
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCN 234
+ +EA+ + K+ K P V+Y LI + A + +M + C P++ T
Sbjct: 96 RVDEAVALLSKMRKKC-VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYT 154
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
++ + + ++A+++F+++ + R + PD+ T++ ++D E R
Sbjct: 155 TLITGFCKSKKSDDALRVFEQL------VARGFR------PDVVTYSCLIDGLCKEGRLK 202
Query: 295 DLELVYKRMLHHGLHF-NAKRHLRMILDASRAGKVE----LLEITWEHLARADRITPPAL 349
+ ++ RM+ G N + +I R GK++ LLE E + D +T L
Sbjct: 203 EAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTL 262
Query: 350 IKERFC 355
+ FC
Sbjct: 263 MNG-FC 267
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 86/203 (42%), Gaps = 12/203 (5%)
Query: 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK 186
+ Y L+ L + + ++A+ + M +G Y + LC + EA +++
Sbjct: 12 VTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEE 71
Query: 187 ICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLF 246
+ P VV+YT LI G + A + ++M+ C P VT N ++ +
Sbjct: 72 MANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERA 131
Query: 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306
EA L +EM IPDI+T+ T++ K+ DD V+++++
Sbjct: 132 SEAYDLLEEMVYSG------------CIPDIFTYTTLITGFCKSKKSDDALRVFEQLVAR 179
Query: 307 GLHFNAKRHLRMILDASRAGKVE 329
G + + +I + G+++
Sbjct: 180 GFRPDVVTYSCLIDGLCKEGRLK 202
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 127/267 (47%), Gaps = 14/267 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ YN ++N + + A+ +L+++K+ G P+ TY V+ K + Y+
Sbjct: 159 PNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKL 218
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
FR+ V+ +PN + Y L++ L R G DEA +++M RG+ Y L LC
Sbjct: 219 FRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCK 278
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVT 232
GK + AL + P VV+Y+ LI +G + A +F +M+ N C P++VT
Sbjct: 279 TGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVT 338
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
++ + +EA ++ + M ED N P++ T+++++D +
Sbjct: 339 FTALMDGLCKGDRLQEAQQVLETM-EDRN-----------CTPNVITYSSLIDGLCKTGQ 386
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMI 319
D + V+KRM+ G+ N + +I
Sbjct: 387 VRDAQEVFKRMIVRGIEPNVVTYNSLI 413
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/368 (21%), Positives = 155/368 (42%), Gaps = 45/368 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR--SLPKKKF----------KTGTLERWDPR 52
P+ V Y ++ L + G + E ++++D MR L KF KTG ++
Sbjct: 229 PNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKV 288
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E PD+V Y+ ++ + + + A + +++++ +P T+ +M+ +
Sbjct: 289 FEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCK 348
Query: 105 CGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
+ + ++ ++ PN + Y L++ L + G+ +A + M RGI +
Sbjct: 349 GDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVT 408
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L C + AL+ M+++ P +++Y LI +G A +F MK
Sbjct: 409 YNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMK 468
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKGLV- 273
FC+P+++T + ++ + + + A LF +M + + + + Y GLV
Sbjct: 469 AKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVD 528
Query: 274 --------------IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
PD+YT+ +++D R + V KRM G N + +I
Sbjct: 529 DAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALI 588
Query: 320 LDASRAGK 327
RAGK
Sbjct: 589 DAFCRAGK 596
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 136/307 (44%), Gaps = 19/307 (6%)
Query: 49 WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY 108
W P + P++ Y V+ + + A +L+++++ G P A Y V+ +
Sbjct: 51 WPPGITPNVFTYAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNT 110
Query: 109 NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
++FR ++ N + + ++++ L + + EA + M+++G V + Y L
Sbjct: 111 AKALDYFRSMECE--KNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLI 168
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
C K A + + ++ + P VV+Y+ +I + A +F QM +N C
Sbjct: 169 NGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCM 228
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
PNLVT N ++ +GL +EA +L EM E +GL PD ++++T++
Sbjct: 229 PNLVTYNTLLSGLCRNGLMDEAYELLDEMRE-----------RGLQ-PDKFSYDTLMAGL 276
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLEITWEHLARADR 343
+ D V++ + + + +I +AG+++ L E E+ D
Sbjct: 277 CKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDV 336
Query: 344 ITPPALI 350
+T AL+
Sbjct: 337 VTFTALM 343
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 121/298 (40%), Gaps = 29/298 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y S+ H + + +DS L ++ TG L PDI+ YN ++
Sbjct: 404 PNVVTYNSLI-------HGFCMTNGVDSALLLMEEMTATGCL--------PDIITYNTLI 448
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + A + +K + P TY ++ + ++ F ++++ +
Sbjct: 449 DGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVL 508
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + LV G D+A +E+M Y L C G+ EA
Sbjct: 509 PDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRV 568
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ ++ K +P VV+YT LI A +G A + +M N PN++T ++ +
Sbjct: 569 LKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCG 628
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELV 299
G EEA K+ + + D N D++ + M+D C + LEL+
Sbjct: 629 TGDLEEARKILERLERDEN-----------CKADMFAYRVMMDGLCRTGRMSAALELL 675
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 127/297 (42%), Gaps = 19/297 (6%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
++ YN + A +R ++ + +L+ G P+ TY +V++ + G + E
Sbjct: 23 NVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKACELL 82
Query: 116 RKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
++++S +P+A Y +++ L + T +A+ ME V + + D LC A
Sbjct: 83 EEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWTIMID---GLCKA 139
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTC 233
+ EA K+ K P +Y LI + A + +MK + +PN+VT
Sbjct: 140 NRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTY 199
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
+ ++ + + A KLF++M E+ +P++ T+NT+L
Sbjct: 200 STVIHGFCRQTKVDTAYKLFRQMVENG------------CMPNLVTYNTLLSGLCRNGLM 247
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
D+ + M GL + + ++ + GK+++ +E + D PP ++
Sbjct: 248 DEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGD--CPPDVV 302
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 14/211 (6%)
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
Q+ + N Y L L R + DE +++ GI + Y + + LC +G +
Sbjct: 17 QQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLD 76
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVK 238
+A ++++ + P Y +I A + N A F M+ C N++T IM+
Sbjct: 77 KACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSME--CEKNVITWTIMID 134
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ EA F +M KK +P+ +T+N +++ + L
Sbjct: 135 GLCKANRLPEATTYFAKM------------KKKGTVPNEWTYNVLINGFCKVHKVHRAYL 182
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ K M GL N + +I R KV+
Sbjct: 183 LLKEMKESGLAPNVVTYSTVIHGFCRQTKVD 213
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 22/153 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + YRS+ G ++E +++ LER D + D+ Y ++
Sbjct: 614 PNVITYRSLIGGFCGTGDLEEARKILER-------------LER-DENCKADMFAYRVMM 659
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNLVYEFFRKVQ 119
+ R + A +L+ +KQ G P Y GL L GK V E +
Sbjct: 660 DGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKEL--GKAMEVLEEMTLSR 717
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM 152
KS PNA AY+ ++ L REG+ +EA + +++
Sbjct: 718 KSR-PNAEAYEAVIQELAREGRHEEANALADEL 749
>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 453
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 137/295 (46%), Gaps = 30/295 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+ D ++ +I L ++ +++ +++ ++R R D V YN +
Sbjct: 158 FQDLASFNTILDVLCKSKRVEKAYELFRALRG----------------RFSVDTVTYNVI 201
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
LN K+ A VL+++ ++G P+ TTY +++ G+ +EFF +++K
Sbjct: 202 LNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDC 261
Query: 124 P-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+ + Y +V+ G+ A + ++M R G++ S A Y + + LC E A++
Sbjct: 262 EIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVV 321
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYL 241
+++ + +P V +Y LI+ +G + +M+N C PN T N+M++ Y
Sbjct: 322 MFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYS 381
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
E E+A+ LF++M G +P++ T+N ++ KR +D+
Sbjct: 382 ECSEVEKALGLFEKMGS------------GDCLPNLDTYNILISGMFVRKRSEDM 424
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/339 (20%), Positives = 144/339 (42%), Gaps = 43/339 (12%)
Query: 13 IAVTLGQAGHIK-ELFDVIDSMRSL---PKKKFKTGTLERWDPRLEPDIVVYNAVLNACV 68
+A+ + H+ ++ +I MRSL P K ER+ +PD V
Sbjct: 96 LAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVK-------- 147
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALA 128
+ + + G ++ +++V+ + YE FR ++ + + +
Sbjct: 148 ----------LFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVT 197
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA---LMQMD 185
Y V++N +T +A+ +++M RGI + Y + + AG+ A ++M
Sbjct: 198 YNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMK 257
Query: 186 KI-CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
K C++ VV+YT ++ +G I+ A +F++M + P++ T N M++ +
Sbjct: 258 KRDCEID----VVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKK 313
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
E A+ +F+EM + R Y+ P++ T+N ++ + E + +RM
Sbjct: 314 DNVENAVVMFEEM------VRRGYE------PNVTTYNVLIRGLFHAGEFSRGEELMQRM 361
Query: 304 LHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARAD 342
+ G N + + MI S +VE +E + D
Sbjct: 362 ENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGD 400
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 46/272 (16%), Positives = 103/272 (37%), Gaps = 48/272 (17%)
Query: 92 ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVE 150
A+++ L +++ + V+ +++ I P+ + ++ GK D+AV
Sbjct: 91 ASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFL 150
Query: 151 DMERRGIVGSAALYYDLARCLCSAGKCE-------------------------------- 178
+M G A + + LC + + E
Sbjct: 151 NMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKR 210
Query: 179 --EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNI 235
+AL + ++ + P + +Y +++ +G I++A F +MK C ++VT
Sbjct: 211 TPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTT 270
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
+V + G + A +F EM + V+P + T+N M+ + ++
Sbjct: 271 VVHGFGVAGEIKRARNVFDEMIREG------------VLPSVATYNAMIQVLCKKDNVEN 318
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
++++ M+ G N + +I AG+
Sbjct: 319 AVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGE 350
>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 127/265 (47%), Gaps = 17/265 (6%)
Query: 32 SMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPS 91
++R++PK LE++ +PD+ YNA++N + + + A VL +++ + P
Sbjct: 132 TLRNVPKAVRVMEILEKFG---QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPD 188
Query: 92 ATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVE 150
TY +++ + + GK +L + + + + P + Y +L+ EG DEA+ ++
Sbjct: 189 TVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLD 248
Query: 151 DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG 210
+M RG+ Y + R +C G + A + + +P V+SY L++A L+ G
Sbjct: 249 EMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQG 308
Query: 211 NIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
+ + +M C PN+VT +I++ G EEAM L + M E
Sbjct: 309 KWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKE----------- 357
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWD 294
KGL PD Y+++ ++ A E R D
Sbjct: 358 KGLT-PDAYSYDPLIAAFCREGRLD 381
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 148/370 (40%), Gaps = 46/370 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD AY ++ + I + V+D MRS K F PD V YN ++
Sbjct: 152 PDVFAYNALINGFCKMNRIDDATRVLDRMRS---KDFS------------PDTVTYNIMI 196
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ R + + A VL QL +P+ TY +++E + G + + + + +
Sbjct: 197 GSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLK 256
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y ++ + +EG D A + ++E +G Y L R L + GK EE
Sbjct: 257 PDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKL 316
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
M K+ P VV+Y+ LI G I+ A + MK +P+ + + ++ A+
Sbjct: 317 MTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCR 376
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + A++ + M D +PDI +NT+L + D ++ +
Sbjct: 377 EGRLDVAIEFLETMISDG------------CLPDIVNYNTVLATLCKNGKADQALEIFGK 424
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKD 362
+ G N+ + M W + D+I +I E N ++ +
Sbjct: 425 LGEVGCSPNSSSYNTM------------FSALW---SSGDKIRALHMILEMVSNGIDPDE 469
Query: 363 --YGSAISCL 370
Y S ISCL
Sbjct: 470 ITYNSMISCL 479
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 135/312 (43%), Gaps = 34/312 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTL------ 46
PDTV Y + +L G + V+D + S L + G +
Sbjct: 187 PDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKL 246
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E L+PD+ YN ++ + + AF +++ L+ +G +P +Y +++ +L
Sbjct: 247 LDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLN 306
Query: 105 CGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK+ + K+ + PN + Y +L+ TL R+GK +EA++ ++ M+ +G+ A
Sbjct: 307 QGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYS 366
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L C G+ + A+ ++ + P +V+Y ++ +G A IF ++
Sbjct: 367 YDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLG 426
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
CSPN + N M A G A+ + EM SN I+ PD T+N+
Sbjct: 427 EVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMV--SNGID----------PDEITYNS 474
Query: 283 MLDACAAEKRWD 294
M+ E D
Sbjct: 475 MISCLCREGMVD 486
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 113/272 (41%), Gaps = 23/272 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y + TL + G I+E +++ M+ + L PD Y+ ++
Sbjct: 327 PNVVTYSILITTLCRDGKIEEAMNLLKLMK---------------EKGLTPDAYSYDPLI 371
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
A R + + A L+ + G P Y V+ + GK + E F K+ +
Sbjct: 372 AAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCS 431
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN+ +Y + + LW G A+ + +M GI Y + CLC G ++A
Sbjct: 432 PNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFEL 491
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + P VV+Y ++ + I++A + + M N C PN T ++++
Sbjct: 492 LVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGF 551
Query: 243 HGLFEEAMKLFQEMAEDSNHIN--REYDKKGL 272
G EAM E+A D IN EY K L
Sbjct: 552 AGYRAEAM----ELANDLVRINAISEYSFKRL 579
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/276 (19%), Positives = 121/276 (43%), Gaps = 24/276 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS-----------------LPKKKFKTG--- 44
PD Y +I + + G + F++I ++ L + K++ G
Sbjct: 257 PDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKL 316
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ + + +P++V Y+ ++ R + E A +L+ +K++G P A +Y ++
Sbjct: 317 MTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCR 376
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ ++ EF + +P+ + Y ++ TL + GK D+A+ + G +++
Sbjct: 377 EGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSS 436
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + L S+G AL + ++ P ++Y +I G + A + M+
Sbjct: 437 YNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMR 496
Query: 224 NFCS--PNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
+ C P++VT NI++ + + E+A+ + M
Sbjct: 497 S-CEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMV 531
>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
Length = 742
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 138/307 (44%), Gaps = 29/307 (9%)
Query: 51 PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
P P I +YN +L +C + + + W+ + + G P T+ +++ ++ G +
Sbjct: 15 PENPPSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDD 74
Query: 111 VYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
E F K+ +K PN ++ +LV R G T + + + +M R G + +Y L
Sbjct: 75 ARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLIS 134
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-----N 224
C GK ++A +D++ K P VV++ I A SG + A+ IF M+
Sbjct: 135 SFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLG 194
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE-YD-------------KK 270
PN++T N+M+ + + G+ EEA LF++M N +NRE Y+ +
Sbjct: 195 LPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEA 254
Query: 271 GLVI---------PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILD 321
LV+ P++Y++N ++D D ++ + M G+ + + ++
Sbjct: 255 QLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHG 314
Query: 322 ASRAGKV 328
GKV
Sbjct: 315 YCHTGKV 321
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 133/309 (43%), Gaps = 33/309 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ + + G + ++D MR K G L PD+V +NA +
Sbjct: 124 PNKVVYNTLISSFCKEGKTDDAEKLVDEMR-------KDG--------LSPDVVTFNARI 168
Query: 65 NA-CVRRKQWEGA--FWVLQQLKQQG-QKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
+A C K E + F +Q + G +P+ TY L++ G F K++
Sbjct: 169 SALCSSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKV 228
Query: 121 SY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
S + N +Y + + L R GK EA +++M G+ + Y + LC G +
Sbjct: 229 SENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFD 288
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A M M + P V+YT L+ +G + A + +M ++ CSPN TCNI++
Sbjct: 289 ARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLY 348
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ + G EA +L Q+M E KG VI D T N ++D + D
Sbjct: 349 SLWKEGRISEAEELLQKMNE-----------KGYVI-DTVTCNIVIDGLCNNGKLDKAIE 396
Query: 299 VYKRMLHHG 307
+ M HG
Sbjct: 397 IVNGMWTHG 405
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/322 (18%), Positives = 129/322 (40%), Gaps = 61/322 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD ++Y +I L +AG + E KKKF +E L+PD +Y+ +
Sbjct: 431 PDLISYSTIISGLCKAGRVGE-----------AKKKF----IEMMGKNLQPDSAIYDVFI 475
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
++ + + AF VL+ ++++G + TY +++ G N ++E +
Sbjct: 476 HSFCKEGKISSAFRVLKDMEKKGCNKTLQTYN---SLIMGLGSKNQIFEIY--------- 523
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+++M RG+ ++Y ++ LC G+ ++A +
Sbjct: 524 ----------------------GLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVL 561
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHG 244
D++ + P + S++ LI+A + + IF N C ++ L G
Sbjct: 562 DEMLQKGISPNISSFSILIKAFCKACDFSAVDEIFEIALNVCGHKEALYSLTFNELLVGG 621
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
+A +LF+ ++R +D + D ++D +++ DD + +++
Sbjct: 622 EVVKAKELFE------TALDRSFDVGNFLYKD------LIDHLCKDEKLDDASGILHKLI 669
Query: 305 HHGLHFNAKRHLRMILDASRAG 326
G F+ + +I + G
Sbjct: 670 DKGYWFDPASFMPVIDGLGKRG 691
>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04760, chloroplastic; Flags: Precursor
gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 602
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 127/265 (47%), Gaps = 17/265 (6%)
Query: 32 SMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPS 91
++R++PK LE++ +PD+ YNA++N + + + A VL +++ + P
Sbjct: 136 TLRNIPKAVRVMEILEKFG---QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPD 192
Query: 92 ATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVE 150
TY +++ + + GK +L + + + + P + Y +L+ EG DEA+ ++
Sbjct: 193 TVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMD 252
Query: 151 DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG 210
+M RG+ Y + R +C G + A + + +P V+SY L++A L+ G
Sbjct: 253 EMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQG 312
Query: 211 NIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
+ + +M C PN+VT +I++ G EEAM L + M E
Sbjct: 313 KWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKE----------- 361
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWD 294
KGL PD Y+++ ++ A E R D
Sbjct: 362 KGLT-PDAYSYDPLIAAFCREGRLD 385
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/370 (23%), Positives = 148/370 (40%), Gaps = 46/370 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD AY ++ + I + V+D MRS K F PD V YN ++
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRS---KDFS------------PDTVTYNIMI 200
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ R + + A VL QL +P+ TY +++E + G + + + + +
Sbjct: 201 GSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLK 260
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y ++ + +EG D A V ++E +G Y L R L + GK EE
Sbjct: 261 PDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKL 320
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
M K+ P VV+Y+ LI G I+ A + MK +P+ + + ++ A+
Sbjct: 321 MTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCR 380
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + A++ + M D +PDI +NT+L + D ++ +
Sbjct: 381 EGRLDVAIEFLETMISDG------------CLPDIVNYNTVLATLCKNGKADQALEIFGK 428
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKD 362
+ G N+ + M W + D+I +I E N ++ +
Sbjct: 429 LGEVGCSPNSSSYNTM------------FSALW---SSGDKIRALHMILEMMSNGIDPDE 473
Query: 363 --YGSAISCL 370
Y S ISCL
Sbjct: 474 ITYNSMISCL 483
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 141/331 (42%), Gaps = 51/331 (15%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD+ YN ++ + + AF +++ L+ +G +P +Y +++ +L GK+
Sbjct: 259 LKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGE 318
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL--AR 169
+ K+ + PN + Y +L+ TL R+GK +EA++ ++ M+ +G+ A Y L A
Sbjct: 319 KLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAF 378
Query: 170 C---------------------------------LCSAGKCEEALMQMDKICKVANKPLV 196
C LC GK ++AL K+ +V P
Sbjct: 379 CREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNS 438
Query: 197 VSYTGLIQACLDSGN-IQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
SY + A SG+ I+ I M N P+ +T N M+ G+ +EA +L +
Sbjct: 439 SSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVD 498
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
M H P + T+N +L R +D V + M+ +G N +
Sbjct: 499 MRSCEFH------------PSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTY 546
Query: 316 LRMILDASRAG-KVELLEITWEHLARADRIT 345
+I AG + E +E+ + L R D I+
Sbjct: 547 TVLIEGIGFAGYRAEAMELAND-LVRIDAIS 576
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 106/255 (41%), Gaps = 17/255 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y + TL + G I+E +++ M+ + L PD Y+ ++
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMK---------------EKGLTPDAYSYDPLI 375
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
A R + + A L+ + G P Y V+ + GK + E F K+ +
Sbjct: 376 AAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCS 435
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN+ +Y + + LW G A+ + +M GI Y + CLC G +EA
Sbjct: 436 PNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFEL 495
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + P VV+Y ++ + I++A + M N C PN T ++++
Sbjct: 496 LVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGF 555
Query: 243 HGLFEEAMKLFQEMA 257
G EAM+L ++
Sbjct: 556 AGYRAEAMELANDLV 570
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 25/173 (14%)
Query: 5 PDTVAYRSIAVTL---GQAGHIKELFDVIDSMRSLPKKK---------FKTG-------- 44
PD V Y ++ TL G+A E+F + + P + +G
Sbjct: 401 PDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHM 460
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
LE ++PD + YN++++ R + AF +L ++ PS TY +V+ +
Sbjct: 461 ILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVL--LGF 518
Query: 105 CGKYNL---VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
C + + + V PN Y VL+ + G EA+ D+ R
Sbjct: 519 CKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVR 571
>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 139/308 (45%), Gaps = 29/308 (9%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S PD Y + LG+AG ++E D+M LER L P+I YN
Sbjct: 130 GSEPDEYTYGFLVNALGKAGRVQEARSFFDAM------------LERG---LTPNIPTYN 174
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
+++A + Q + A + ++K++G +PS TY ++++ + + G+ + F K+
Sbjct: 175 LLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGD 234
Query: 122 YI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
P++ Y LVN L + G+ +EA +M RG+ Y L L AG +
Sbjct: 235 GCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRV 294
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
M ++ + P S+ ++ A + A +F +M ++ C P+L++ NI++ +
Sbjct: 295 WKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDS 354
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
Y G +A ++ +EM E IP+ T+N+++ A + + D+ V
Sbjct: 355 YARFGDAAQARQMLEEMVEAG------------FIPETKTYNSLIHWLATDGQVDEAFAV 402
Query: 300 YKRMLHHG 307
+ M G
Sbjct: 403 LEEMETAG 410
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 114/254 (44%), Gaps = 14/254 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D YN ++ R Q + A + +++K +G +P TYG ++ + G+ FF
Sbjct: 99 DRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFF 158
Query: 116 RK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+++ PN Y +L++ + G+ D A+ +M+RRG S Y L LCSA
Sbjct: 159 DAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSA 218
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTC 233
G+ A K+ P +Y+ L+ SG ++ A +F +M + + +LV
Sbjct: 219 GRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNY 278
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N ++ + G + KL +EM+ H PD ++FNT++DA +
Sbjct: 279 NSLLATLAKAGNMDRVWKLMKEMSRKGFH------------PDAFSFNTIMDALGKANKP 326
Query: 294 DDLELVYKRMLHHG 307
D V+ RM+ G
Sbjct: 327 DAAREVFARMVESG 340
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 118/254 (46%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD+ Y ++ LG++G ++E V M D + D+V YN++L
Sbjct: 238 PDSYTYSTLVNGLGKSGRVEEAHKVFREM---------------VDRGVAVDLVNYNSLL 282
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYI 123
+ + + +++++ ++G P A ++ +M+ + K + E F R V+
Sbjct: 283 ATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCK 342
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++Y +L+++ R G +A +E+M G + Y L L + G+ +EA
Sbjct: 343 PDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAV 402
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
++++ +P VV+Y L+ G Q AA +F QMK+ P+ ++ + +
Sbjct: 403 LEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAF 462
Query: 243 HGLFEEAMKLFQEM 256
+EA+ LF++M
Sbjct: 463 DDRLDEALVLFKDM 476
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 134/303 (44%), Gaps = 22/303 (7%)
Query: 29 VIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ 88
++D + +L K+ G L P+ +V ++ A R + AF + Q +
Sbjct: 10 ILDPLETLLKEMVAEGR------PLRPNTLV--KLITAYGRGNKSGDAFDLFNQAESFAC 61
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVS 147
P+ + ++++++ G++ ++K VQK + AY VL+ R G+ D A+
Sbjct: 62 SPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAME 121
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
+M+ +G Y L L AG+ +EA D + + P + +Y L+ A
Sbjct: 122 MFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFR 181
Query: 208 DSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
G + A +F +MK P++VT NI++ A G A KLF +M D
Sbjct: 182 KVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDG------ 235
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
PD YT++T+++ R ++ V++ M+ G+ + + ++ ++AG
Sbjct: 236 ------CSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAG 289
Query: 327 KVE 329
++
Sbjct: 290 NMD 292
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ YN++++ Q + AF VL++++ G +P TY +M+++ G+
Sbjct: 378 PETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARL 437
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F++++ K P+ L+Y V ++ L + + DEA+ +DM+ G A+Y L R
Sbjct: 438 FQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILIRAAHR 497
Query: 174 AGKCE 178
AG E
Sbjct: 498 AGDTE 502
>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
Length = 735
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 161/346 (46%), Gaps = 34/346 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV + ++ L G + E +++D M + K P ++ NA++
Sbjct: 140 PDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHK---------------PTLITLNALV 184
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
N + A ++ ++ + G +P+ TYG V++VM G+ L E RK+++ I
Sbjct: 185 NGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIK 244
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+A+ Y ++++ L ++G D A + +ME +G +Y L R C AG+ ++
Sbjct: 245 LDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKL 304
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + K P VV+++ LI + G ++ A + +M + SP+ VT ++ + +
Sbjct: 305 LRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCK 364
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYK 301
++A NH+ KG P+I TFN +++ C A D LEL ++
Sbjct: 365 ENQLDKA-----------NHMLDLMVSKGCG-PNIRTFNILINGYCKANLIDDGLEL-FR 411
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELL-EITWEHLARADRITP 346
+M G+ + + +I GK+E+ E+ E ++R R+ P
Sbjct: 412 KMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSR--RVRP 455
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 116/249 (46%), Gaps = 16/249 (6%)
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKS 121
++N C R ++ AF + ++ + G +P T+ ++ + G+ + E R V+
Sbjct: 113 MINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMG 172
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+ P + LVN L GK +AV ++ M G + Y + + +C +G+ A+
Sbjct: 173 HKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAM 232
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKA 239
+ K+ + K V Y+ +I G++ NA +FN+M K F +++ +++
Sbjct: 233 ELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGF-KADIIIYTTLIRG 291
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ G +++ KL ++M I R+ + PD+ F+ ++D E + + E +
Sbjct: 292 FCYAGRWDDGAKLLRDM------IKRK------ITPDVVAFSALIDCFVKEGKLREAEEL 339
Query: 300 YKRMLHHGL 308
+K M+ G+
Sbjct: 340 HKEMIQRGI 348
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 133/331 (40%), Gaps = 48/331 (14%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTL------------ERWDP-- 51
D V Y I L + G + F++ + M K FK + RWD
Sbjct: 246 DAVKYSIIIDGLCKDGSLDNAFNLFNEMEI---KGFKADIIIYTTLIRGFCYAGRWDDGA 302
Query: 52 ---------RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GL 97
++ PD+V ++A+++ V+ + A + +++ Q+G P TY G
Sbjct: 303 KLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGF 362
Query: 98 VMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
E L K N + + V K PN + +L+N + D+ + M RG+
Sbjct: 363 CKENQL--DKANHMLDLM--VSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGV 418
Query: 158 VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217
V Y L + C GK E A ++ +P +VSY L+ D+G + A
Sbjct: 419 VADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALE 478
Query: 218 IFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
IF ++ K+ ++ NI++ ++A LF + KG V PD
Sbjct: 479 IFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLP-----------LKG-VKPD 526
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
+ T+N M+ + + +L++++M G
Sbjct: 527 VKTYNIMIGGLCKKGSLSEADLLFRKMEEDG 557
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/338 (20%), Positives = 145/338 (42%), Gaps = 34/338 (10%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
V Y L + + + + A + Q++ + +P + + V+ +Y+LV + ++
Sbjct: 38 VSYRERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQ 97
Query: 118 VQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
++ K N +++N R K A SA+ + + G + L LC G+
Sbjct: 98 MELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGR 157
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNI 235
EAL +D++ ++ +KP +++ L+ +G + +A + ++M + PN VT
Sbjct: 158 VSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGP 217
Query: 236 MVKAYLEHGLFEEAMKLFQEMAE------------------------DSNHINREYDKKG 271
++K + G AM+L ++M E ++ ++ E + KG
Sbjct: 218 VLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 277
Query: 272 LVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-EL 330
DI + T++ RWDD + + M+ + + +I + GK+ E
Sbjct: 278 FK-ADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREA 336
Query: 331 LEITWEHLARA---DRITPPALIKERFC--NRLENKDY 363
E+ E + R D +T +LI + FC N+L+ ++
Sbjct: 337 EELHKEMIQRGISPDTVTYTSLI-DGFCKENQLDKANH 373
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/320 (20%), Positives = 131/320 (40%), Gaps = 37/320 (11%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D V YN ++ + E A + Q++ + +P +Y ++++ + G+ E F
Sbjct: 421 DTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIF 480
Query: 116 RKVQKSYIPNALA-YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
K++KS + + Y ++++ + K D+A + +G+ Y + LC
Sbjct: 481 EKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKK 540
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCN 234
G EA + K+ + + P +Y LI+A L G+ +A + ++K C
Sbjct: 541 GSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKR--------CG 592
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
V A A+ M + + PD++TF T+L E+
Sbjct: 593 FSVDA----STLRFALSTLARMLKAGHE------------PDVFTFTTLLRPFCLEENAS 636
Query: 295 --DLELVYKRMLHHGLHFNAKRH---LRMILDASRAGKVE-LLEITWEHLARADRITPPA 348
D ++K M G N + ++ +L+ + +V +L+ +E + P A
Sbjct: 637 VYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQ-----PNA 691
Query: 349 LIKERFCNRLENKD-YGSAI 367
+ K F + L +D +GSAI
Sbjct: 692 VTKSTFISGLCKQDLHGSAI 711
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 89/215 (41%), Gaps = 15/215 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PD+ YN ++ ++ A + +++++ G P+ TY +++ L G
Sbjct: 523 VKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSA 582
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR--C 170
+ ++++ + V +TL A+S + M + G + L R C
Sbjct: 583 KLIEEIKRC------GFSVDASTLRF------ALSTLARMLKAGHEPDVFTFTTLLRPFC 630
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
L +A + + KP VV+Y +I+ L+ I + +QM + C PN
Sbjct: 631 LEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPN 690
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
VT + + + L A+ L ++M D+ +
Sbjct: 691 AVTKSTFISGLCKQDLHGSAILLLRKMENDNEDVT 725
>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 643
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 137/280 (48%), Gaps = 18/280 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+EPD Y ++++ + + E A +L+++K+ G P+A TY +++ C K +LV
Sbjct: 302 VEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGY--CNKGDLVK 359
Query: 113 EFFRK---VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
F + V+++ +P Y +L++ L+ EGK DEA ++DM GIV + Y L
Sbjct: 360 AFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILIN 419
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSP 228
C G ++A D++ +P +V+YT LI ++ A +F + ++ SP
Sbjct: 420 GYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASP 479
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
+L+ N ++ + +G + A L +EM DK+ +V PD T+NT++
Sbjct: 480 DLIMFNALIDGHCANGNLDRAFALLKEM-----------DKRNIV-PDEVTYNTLMQGRC 527
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
E + ++ + K M G+ + + +I S+ G +
Sbjct: 528 REGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDI 567
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 112/256 (43%), Gaps = 20/256 (7%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY----E 113
+V++ ++ AC K+ + AF +K++G P T+ ++ + L + V+ E
Sbjct: 167 IVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAE 226
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
FR KS + + +++N L +EGK +A + ME G+ + Y + CS
Sbjct: 227 MFRLKIKSTV---YTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCS 283
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
G+ E A M +D + +P +Y LI G ++ A+ I +MK P VT
Sbjct: 284 RGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVT 343
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ Y G +A EM + ++P + T+N ++ A E +
Sbjct: 344 YNTLIDGYCNKGDLVKAFGYRDEMVRRA------------ILPTVSTYNLLIHALFLEGK 391
Query: 293 WDDLELVYKRMLHHGL 308
D+ + + K M G+
Sbjct: 392 MDEADGMIKDMGDSGI 407
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 103/210 (49%), Gaps = 2/210 (0%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D + PD + YN ++N R + AF + ++ +G +P+ TY ++ V+ +
Sbjct: 404 DSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMK 463
Query: 110 LVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
+ F K+ ++ P+ + + L++ G D A + +++M++R IV Y L
Sbjct: 464 AADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLM 523
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-S 227
+ C GK EEA + ++ + +P +SY LI G+I +A I ++M + +
Sbjct: 524 QGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFN 583
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
P L+T N +++ ++ + A +L +EM
Sbjct: 584 PTLLTYNALIQGLCKNQQGDLAEELLKEMV 613
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/300 (21%), Positives = 133/300 (44%), Gaps = 28/300 (9%)
Query: 27 FDVIDSMRSLPKKKFKTGTL-----ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQ 81
+ ++M SL K +T T+ E + +++ + +N ++N + + + A +
Sbjct: 201 IETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIG 260
Query: 82 QLKQQGQKPSATTYGLVMEVMLACGKYN---LVYEFFRKVQKSYIPNALAYKVLVNTLWR 138
++ G KP+ TY V+ + G+ +V + + + P++ Y L++ + +
Sbjct: 261 SMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMK--NRGVEPDSYTYGSLISGMCK 318
Query: 139 EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
GK +EA +E M+ G++ +A Y L C+ G +A D++ + A P V +
Sbjct: 319 GGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVST 378
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y LI A G + A + M + P+ +T NI++ Y G ++A L EM
Sbjct: 379 YNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMI 438
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG-----LHFNA 312
KG + P + T+ +++ + R + ++++++ G + FNA
Sbjct: 439 S-----------KG-IQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNA 486
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 2/137 (1%)
Query: 46 LERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L+ D R + PD V YN ++ R + E A +L+++K++G +P +Y ++
Sbjct: 504 LKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSK 563
Query: 105 CGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G N + ++ + P L Y L+ L + + D A +++M +GI +
Sbjct: 564 RGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDST 623
Query: 164 YYDLARCLCSAGKCEEA 180
Y+ L + EA
Sbjct: 624 YFSLIEGIGKVDDSSEA 640
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/185 (18%), Positives = 74/185 (40%), Gaps = 13/185 (7%)
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+++ + +L+ + D+A + M+ +G+V + + + E +
Sbjct: 165 SSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLY 224
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
++ ++ K V ++ +I G ++ A M+N PN+VT N ++ Y
Sbjct: 225 AEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSR 284
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G E A + M NR V PD YT+ +++ + ++ + ++M
Sbjct: 285 GRVEGARMVLDIMK------NRG------VEPDSYTYGSLISGMCKGGKLEEASGILEKM 332
Query: 304 LHHGL 308
GL
Sbjct: 333 KEIGL 337
>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
Length = 897
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 82/363 (22%), Positives = 150/363 (41%), Gaps = 49/363 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR---SLPKKKFKTGT-LERW----------- 49
P+ V Y ++ G ++ D++ MR + ++ GT + W
Sbjct: 512 PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVK 571
Query: 50 -------DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
++P+ V+YNA++ + + + A ++ ++G + TY L++ +
Sbjct: 572 VFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 631
Query: 103 LACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
G+ YE ++ K P+ Y +L+N +EG +A+ E+M RRG+ +
Sbjct: 632 FMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATV 691
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L L G+ +E D+ + +P +V Y LI + SGNI A I +
Sbjct: 692 VTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE 751
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE---------------------- 258
M K +P+ VT N +++ G +EA KL EM E
Sbjct: 752 MEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGD 811
Query: 259 --DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316
D+ I E KG P + T+N ++ + DD E + K M+ +G+ + ++
Sbjct: 812 VKDALRIRNEMMNKGFN-PTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYI 870
Query: 317 RMI 319
+I
Sbjct: 871 SLI 873
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 116/240 (48%), Gaps = 14/240 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD+ YN ++N + + A + + + ++G + + TY ++ + G+
Sbjct: 652 LAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETD 711
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F + V++ P+ + Y L+N+ G D A + +ME++ I Y L R L
Sbjct: 712 KLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGL 771
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
C G+ +EA +D++ + +P +V+Y LI G++++A I N+M N +P L
Sbjct: 772 CLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTL 831
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T N +++ ++G ++A + +EM E+ + PD T+ ++++ E
Sbjct: 832 LTYNALIQGLCKNGQGDDAENMVKEMVENG------------ITPDDSTYISLIEGLTTE 879
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 110/251 (43%), Gaps = 18/251 (7%)
Query: 93 TTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM 152
TT+ +++ + + GK E R++ + PNA+ Y ++ G+ A+ + +M
Sbjct: 484 TTFNIMLRHLCSAGKPARALELLRQMPR---PNAVTYNTVIAGFCSRGRVQAALDIMREM 540
Query: 153 -ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK-ICKVANKPLVVSYTGLIQACLDSG 210
ER GI + Y + C G+ +EA+ D+ + K KP V Y LI D G
Sbjct: 541 RERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQG 600
Query: 211 NIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
+ A ++M + + + T N++V A G EA +L +EM
Sbjct: 601 KLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMG-----------G 649
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
KGL PD++T+N +++ E +++ M G+ + +I S+ G+V+
Sbjct: 650 KGLA-PDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQ 708
Query: 330 LLEITWEHLAR 340
+ ++ R
Sbjct: 709 ETDKLFDEAVR 719
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 125/270 (46%), Gaps = 19/270 (7%)
Query: 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK--SYIPNALAYKVLVNTLWRE 139
+L +Q +P+A TY V+ + G+ + R++++ PN Y +++ +
Sbjct: 504 ELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 563
Query: 140 GKTDEAVSAVEDMERRGIVGSAALYYD-LARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
G+ DEAV ++M +G V A+ Y+ L C GK + AL+ D++ + V +
Sbjct: 564 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 623
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y L+ A G A + +M +P++ T NI++ + + G ++A+++F+ M+
Sbjct: 624 YNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMS 683
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
++G V + T+ ++ A + + + + + ++ + G+ + +
Sbjct: 684 -----------RRG-VRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNA 731
Query: 318 MILDASRAGKVE-LLEITWEHLARADRITP 346
+I S +G ++ EI E + RI P
Sbjct: 732 LINSHSTSGNIDRAFEIMGEMEKK--RIAP 759
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 17/166 (10%)
Query: 145 AVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204
A + DM R + + + R LCSAGK AL ++ + +P V+Y +I
Sbjct: 467 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARAL----ELLRQMPRPNAVTYNTVIA 522
Query: 205 ACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNH 262
G +Q A I +M + +PN T ++ + + G +EA+K+F EM
Sbjct: 523 GFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEML----- 577
Query: 263 INREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
KG V P+ +N ++ + + D L RM+ G+
Sbjct: 578 ------TKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGV 617
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 127/267 (47%), Gaps = 14/267 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ YN ++N + + A+ +L+++K+ G P+ TY V+ K + Y+
Sbjct: 40 PNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKL 99
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
FR+ V+ +PN + Y L++ L R G DEA +++M RG+ Y L LC
Sbjct: 100 FRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCK 159
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVT 232
GK + AL + P VV+Y+ LI +G + A +F +M+ N C P++VT
Sbjct: 160 TGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVT 219
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
++ + +EA ++ + M ED N P++ T+++++D +
Sbjct: 220 FTALMDGLCKGDRLQEAQQVLETM-EDRN-----------CTPNVITYSSLIDGLCKTGQ 267
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMI 319
D + V+KRM+ G+ N + +I
Sbjct: 268 VRDAQEVFKRMIVRGIEPNVVTYNSLI 294
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/368 (21%), Positives = 155/368 (42%), Gaps = 45/368 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR--SLPKKKF----------KTGTLERWDPR 52
P+ V Y ++ L + G + E ++++D MR L KF KTG ++
Sbjct: 110 PNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKV 169
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E PD+V Y+ ++ + + + A + +++++ +P T+ +M+ +
Sbjct: 170 FEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCK 229
Query: 105 CGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
+ + ++ ++ PN + Y L++ L + G+ +A + M RGI +
Sbjct: 230 GDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVT 289
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L C + AL+ M+++ P +++Y LI +G A +F MK
Sbjct: 290 YNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMK 349
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKGLV- 273
FC+P+++T + ++ + + + A LF +M + + + + Y GLV
Sbjct: 350 AKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVD 409
Query: 274 --------------IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
PD+YT+ +++D R + V KRM G N + +I
Sbjct: 410 DAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALI 469
Query: 320 LDASRAGK 327
RAGK
Sbjct: 470 DAFCRAGK 477
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 123/282 (43%), Gaps = 25/282 (8%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + L P++V Y+ V++ R+ + + A+ + +Q+ + G P+ TY ++ + G
Sbjct: 67 EMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNG 126
Query: 107 KYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ YE ++ ++ P+ +Y L+ L + GK D A+ ED Y
Sbjct: 127 LMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYS 186
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
L LC G+ +EA +K+ + + +P VV++T L+ +Q A + M++
Sbjct: 187 TLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDR 246
Query: 226 -CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM-----------------------AEDSN 261
C+PN++T + ++ + G +A ++F+ M DS
Sbjct: 247 NCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSA 306
Query: 262 HINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
+ E +PDI T+NT++D R + ++ M
Sbjct: 307 LLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDM 348
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 121/298 (40%), Gaps = 29/298 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y S+ H + + +DS L ++ TG L PDI+ YN ++
Sbjct: 285 PNVVTYNSLI-------HGFCMTNGVDSALLLMEEMTATGCL--------PDIITYNTLI 329
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + A + +K + P TY ++ + ++ F ++++ +
Sbjct: 330 DGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVL 389
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + LV G D+A +E+M Y L C G+ EA
Sbjct: 390 PDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRV 449
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ ++ K +P VV+YT LI A +G A + +M N PN++T ++ +
Sbjct: 450 LKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCG 509
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELV 299
G EEA K+ + + D N D++ + M+D C + LEL+
Sbjct: 510 TGDLEEARKMLERLERDEN-----------CKADMFAYRVMMDGLCRTGRMSAALELL 556
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 103/231 (44%), Gaps = 17/231 (7%)
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N + + ++++ L + + EA + M+++G V + Y L C K A + +
Sbjct: 6 NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
++ + P VV+Y+ +I + A +F QM +N C PNLVT N ++ +
Sbjct: 66 KEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRN 125
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
GL +EA +L EM E +GL PD ++++T++ + D V++
Sbjct: 126 GLMDEAYELLDEMRE-----------RGLQ-PDKFSYDTLMAGLCKTGKIDMALKVFEDN 173
Query: 304 LHHGLHFNAKRHLRMILDASRAGKVE----LLEITWEHLARADRITPPALI 350
+ + + +I + G+++ L E E+ D +T AL+
Sbjct: 174 SNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALM 224
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 101/286 (35%), Gaps = 66/286 (23%)
Query: 79 VLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVN---- 134
++ L + + P ATTY F + +K +PN Y VL+N
Sbjct: 13 MIDGLCKANRLPEATTY------------------FAKMKKKGTVPNEWTYNVLINGFCK 54
Query: 135 -------------------------------TLWREGKTDEAVSAVEDMERRGIVGSAAL 163
R+ K D A M G + +
Sbjct: 55 VHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVT 114
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L LC G +EA +D++ + +P SY L+ +G I A +F
Sbjct: 115 YNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNS 174
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
N C P++V + ++ + G +EA KLF++M E+S PD+ TF
Sbjct: 175 NGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCE------------PDVVTFTA 222
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
++D R + + V + M N + +I + G+V
Sbjct: 223 LMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQV 268
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 22/153 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + YRS+ G ++E +++ LER D + D+ Y ++
Sbjct: 495 PNVITYRSLIGGFCGTGDLEEARKMLER-------------LER-DENCKADMFAYRVMM 540
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNLVYEFFRKVQ 119
+ R + A +L+ +KQ G P Y GL L GK V E +
Sbjct: 541 DGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKEL--GKAMEVLEEMTLSR 598
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM 152
KS PNA AY+ ++ L REG+ +EA + +++
Sbjct: 599 KSR-PNAEAYEAVIQELAREGRHEEANALADEL 630
>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/349 (22%), Positives = 157/349 (44%), Gaps = 47/349 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y ++ ++ + G +KE R L + R EP + VYNA++
Sbjct: 214 PDAVSYTTVISSMCEVGLVKE-------GRELAE-------------RFEPVVSVYNALI 253
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + ++GAF +++++ ++G P+ +Y ++ V+ G+ L + F + +++
Sbjct: 254 NGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCH 313
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERR-GIVGSAALYYDLARCLCSAGKCEEALM 182
PN LV + G T +A+ M R G+ + Y L + CS G +A+
Sbjct: 314 PNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVS 373
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ ++ P + +Y LI G++ A YI+N+M + C PN+V MV+A
Sbjct: 374 VFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALC 433
Query: 242 EHGLFEEAMKLFQEMAED------------------------SNHINREYDKKGLVIPDI 277
H F+EA L + M+++ + + R+ +++ P+I
Sbjct: 434 RHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNI 493
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
T+N +LD A R ++ + + + G+ +++ + ++ + AG
Sbjct: 494 VTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAG 542
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 132/292 (45%), Gaps = 18/292 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
EP++ YN +L A + + +GA +L ++ +G P A +Y V+ M G LV
Sbjct: 177 FEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVG---LVK 233
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
E R++ + + P Y L+N L +E A + +M +GI + Y L LC
Sbjct: 234 E-GRELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLC 292
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNF-CSPNL 230
++G+ E A + ++ K P + + + L++ C G +A ++NQM + F PN+
Sbjct: 293 NSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNV 352
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
V N +V+ + HG +A+ +F M E P+I T+ ++++ A
Sbjct: 353 VAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCS------------PNIRTYGSLINGFAKR 400
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARAD 342
D ++ +ML G N + M+ R K + E E +++ +
Sbjct: 401 GSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKEN 452
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 105/238 (44%), Gaps = 22/238 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLER---- 48
P+ VAY ++ G+I + V M SL K G+L+
Sbjct: 350 PNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYI 409
Query: 49 WDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
W+ L P++VVY ++ A R +++ A +++ + ++ PS T+ ++ +
Sbjct: 410 WNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCD 469
Query: 105 CGKYNLVYEFFRKVQKSY--IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G+ + + FR++++ + PN + Y L++ L + + +EA ++ RG+ S++
Sbjct: 470 AGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSS 529
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y L C+AG AL + K+ P ++ +I A G + AA + +
Sbjct: 530 TYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLD 587
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 101/241 (41%), Gaps = 17/241 (7%)
Query: 72 QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYK 130
Q + ++LQQ+K QG S + V+ V G E F ++++ P+ Y
Sbjct: 91 QVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYN 150
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
+++TL E + DM+R G + Y L + LC K + A + ++
Sbjct: 151 HVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNK 210
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAM 250
P VSYT +I + + G ++ + + + P + N ++ + ++ A
Sbjct: 211 GCCPDAVSYTTVISSMCEVGLVKEGRELAERFE----PVVSVYNALINGLCKEHDYKGAF 266
Query: 251 KLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHF 310
+L +EM E KG + P++ +++T+++ + + +ML G H
Sbjct: 267 ELMREMVE-----------KG-ISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHP 314
Query: 311 N 311
N
Sbjct: 315 N 315
>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
Length = 902
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/363 (22%), Positives = 150/363 (41%), Gaps = 49/363 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR---SLPKKKFKTGT-LERW----------- 49
P+ V Y ++ G ++ D++ MR + ++ GT + W
Sbjct: 517 PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVK 576
Query: 50 -------DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
++P+ V+YNA++ + + + A ++ ++G + TY L++ +
Sbjct: 577 VFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 636
Query: 103 LACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
G+ YE ++ K P+ Y +L+N +EG +A+ E+M RRG+ +
Sbjct: 637 FMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATV 696
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L L G+ +E D+ + +P +V Y LI + SGNI A I +
Sbjct: 697 VTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE 756
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE---------------------- 258
M K +P+ VT N +++ G +EA KL EM E
Sbjct: 757 MEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGD 816
Query: 259 --DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316
D+ I E KG P + T+N ++ + DD E + K M+ +G+ + ++
Sbjct: 817 VKDALRIRNEMMNKGFN-PTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYI 875
Query: 317 RMI 319
+I
Sbjct: 876 SLI 878
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 116/240 (48%), Gaps = 14/240 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD+ YN ++N + + A + + + ++G + + TY ++ + G+
Sbjct: 657 LAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETD 716
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F + V++ P+ + Y L+N+ G D A + +ME++ I Y L R L
Sbjct: 717 KLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGL 776
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
C G+ +EA +D++ + +P +V+Y LI G++++A I N+M N +P L
Sbjct: 777 CLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTL 836
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T N +++ ++G ++A + +EM E+ + PD T+ ++++ E
Sbjct: 837 LTYNALIQGLCKNGQGDDAENMVKEMVENG------------ITPDDSTYISLIEGLTTE 884
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 110/251 (43%), Gaps = 18/251 (7%)
Query: 93 TTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM 152
TT+ +++ + + GK E R++ + PNA+ Y ++ G+ A+ + +M
Sbjct: 489 TTFNIMLRHLCSAGKPARALELLRQMPR---PNAVTYNTVIAGFCSRGRVQAALDIMREM 545
Query: 153 -ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK-ICKVANKPLVVSYTGLIQACLDSG 210
ER GI + Y + C G+ +EA+ D+ + K KP V Y LI D G
Sbjct: 546 RERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQG 605
Query: 211 NIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
+ A ++M + + + T N++V A G EA +L +EM
Sbjct: 606 KLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMG-----------G 654
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
KGL PD++T+N +++ E +++ M G+ + +I S+ G+V+
Sbjct: 655 KGLA-PDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQ 713
Query: 330 LLEITWEHLAR 340
+ ++ R
Sbjct: 714 ETDKLFDEAVR 724
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 125/270 (46%), Gaps = 19/270 (7%)
Query: 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK--SYIPNALAYKVLVNTLWRE 139
+L +Q +P+A TY V+ + G+ + R++++ PN Y +++ +
Sbjct: 509 ELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 568
Query: 140 GKTDEAVSAVEDMERRGIVGSAALYYD-LARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
G+ DEAV ++M +G V A+ Y+ L C GK + AL+ D++ + V +
Sbjct: 569 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 628
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y L+ A G A + +M +P++ T NI++ + + G ++A+++F+ M+
Sbjct: 629 YNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMS 688
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
++G V + T+ ++ A + + + + + ++ + G+ + +
Sbjct: 689 -----------RRG-VRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNA 736
Query: 318 MILDASRAGKVE-LLEITWEHLARADRITP 346
+I S +G ++ EI E + RI P
Sbjct: 737 LINSHSTSGNIDRAFEIMGEMEKK--RIAP 764
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 17/166 (10%)
Query: 145 AVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204
A + DM R + + + R LCSAGK AL ++ + +P V+Y +I
Sbjct: 472 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARAL----ELLRQMPRPNAVTYNTVIA 527
Query: 205 ACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNH 262
G +Q A I +M + +PN T ++ + + G +EA+K+F EM
Sbjct: 528 GFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEML----- 582
Query: 263 INREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
KG V P+ +N ++ + + D L RM+ G+
Sbjct: 583 ------TKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGV 622
>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 161/346 (46%), Gaps = 34/346 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV + ++ L G + E +++D M + K P ++ NA++
Sbjct: 140 PDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHK---------------PTLITLNALV 184
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
N + A ++ ++ + G +P+ TYG V++VM G+ L E RK+++ I
Sbjct: 185 NGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIK 244
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+A+ Y ++++ L ++G D A + +ME +G +Y L R C AG+ ++
Sbjct: 245 LDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKL 304
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + K P VV+++ LI + G ++ A + +M + SP+ VT ++ + +
Sbjct: 305 LRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCK 364
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYK 301
++A NH+ KG P+I TFN +++ C A D LEL ++
Sbjct: 365 ENQLDKA-----------NHMLDLMVSKGCG-PNIRTFNILINGYCKANLIDDGLEL-FR 411
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELL-EITWEHLARADRITP 346
+M G+ + + +I GK+E+ E+ E ++R R+ P
Sbjct: 412 KMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSR--RVRP 455
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 116/249 (46%), Gaps = 16/249 (6%)
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKS 121
++N C R ++ AF + ++ + G +P T+ ++ + G+ + E R V+
Sbjct: 113 MINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMG 172
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+ P + LVN L GK +AV ++ M G + Y + + +C +G+ A+
Sbjct: 173 HKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAM 232
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKA 239
+ K+ + K V Y+ +I G++ NA +FN+M K F +++ +++
Sbjct: 233 ELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGF-KADIIIYTTLIRG 291
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ G +++ KL ++M I R+ + PD+ F+ ++D E + + E +
Sbjct: 292 FCYAGRWDDGAKLLRDM------IKRK------ITPDVVAFSALIDCFVKEGKLREAEEL 339
Query: 300 YKRMLHHGL 308
+K M+ G+
Sbjct: 340 HKEMIQRGI 348
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 133/331 (40%), Gaps = 48/331 (14%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTL------------ERWDP-- 51
D V Y I L + G + F++ + M K FK + RWD
Sbjct: 246 DAVKYSIIIDGLCKDGSLDNAFNLFNEMEI---KGFKADIIIYTTLIRGFCYAGRWDDGA 302
Query: 52 ---------RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GL 97
++ PD+V ++A+++ V+ + A + +++ Q+G P TY G
Sbjct: 303 KLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGF 362
Query: 98 VMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
E L K N + + V K PN + +L+N + D+ + M RG+
Sbjct: 363 CKENQL--DKANHMLDLM--VSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGV 418
Query: 158 VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217
V Y L + C GK E A ++ +P +VSY L+ D+G + A
Sbjct: 419 VADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALE 478
Query: 218 IFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
IF ++ K+ ++ NI++ ++A LF + KG V PD
Sbjct: 479 IFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLP-----------LKG-VKPD 526
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
+ T+N M+ + + +L++++M G
Sbjct: 527 VKTYNIMIGGLCKKGSLSEADLLFRKMEEDG 557
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 118/257 (45%), Gaps = 23/257 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV Y S+ + + + ++D M S P+I +N ++
Sbjct: 350 PDTVTYTSLIDGFCKENQLDKANHMLDLMVS---------------KGCGPNIRTFNILI 394
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + + + +++ +G TY +++ GK + E F++ V +
Sbjct: 395 NGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVR 454
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++YK+L++ L G+ ++A+ E +E+ + +Y + +C+A K ++A
Sbjct: 455 PDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDA--- 511
Query: 184 MDKICKV---ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKA 239
D C + KP V +Y +I G++ A +F +M+ + SPN T NI+++A
Sbjct: 512 WDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRA 571
Query: 240 YLEHGLFEEAMKLFQEM 256
+L G ++ KL +E+
Sbjct: 572 HLGEGDATKSAKLIEEI 588
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/338 (20%), Positives = 145/338 (42%), Gaps = 34/338 (10%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
V Y L + + + + A + Q++ + +P + + V+ +Y+LV + ++
Sbjct: 38 VSYRERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQ 97
Query: 118 VQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
++ K N +++N R K A SA+ + + G + L LC G+
Sbjct: 98 MELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGR 157
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNI 235
EAL +D++ ++ +KP +++ L+ +G + +A + ++M + PN VT
Sbjct: 158 VSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGP 217
Query: 236 MVKAYLEHGLFEEAMKLFQEMAE------------------------DSNHINREYDKKG 271
++K + G AM+L ++M E ++ ++ E + KG
Sbjct: 218 VLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 277
Query: 272 LVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-EL 330
DI + T++ RWDD + + M+ + + +I + GK+ E
Sbjct: 278 FK-ADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREA 336
Query: 331 LEITWEHLARA---DRITPPALIKERFC--NRLENKDY 363
E+ E + R D +T +LI + FC N+L+ ++
Sbjct: 337 EELHKEMIQRGISPDTVTYTSLI-DGFCKENQLDKANH 373
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 76/169 (44%), Gaps = 1/169 (0%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D V YN ++ + E A + Q++ + +P +Y ++++ + G+ E F
Sbjct: 421 DTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIF 480
Query: 116 RKVQKSYIPNALA-YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
K++KS + + Y ++++ + K D+A + +G+ Y + LC
Sbjct: 481 EKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKK 540
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
G EA + K+ + + P +Y LI+A L G+ +A + ++K
Sbjct: 541 GSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIK 589
>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
Length = 528
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/363 (22%), Positives = 151/363 (41%), Gaps = 49/363 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR---SLPKKKFKTGTL-------ERWDP--- 51
P+ V Y ++ G ++ D++ MR + ++ GT+ R D
Sbjct: 143 PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVK 202
Query: 52 ---------RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
++P+ V+YNA++ + + + A ++ ++G + TY L++ +
Sbjct: 203 VFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 262
Query: 103 LACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
G+ YE ++ K P+ Y +L+N +EG +A+ E+M RRG+ +
Sbjct: 263 FMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATV 322
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L L G+ +E D+ + +P +V Y LI + SGNI A I +
Sbjct: 323 VTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE 382
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE---------------------- 258
M K +P+ VT N +++ G +EA KL EM E
Sbjct: 383 MEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGD 442
Query: 259 --DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316
D+ I E KG P + T+N ++ + DD E + K M+ +G+ + ++
Sbjct: 443 VKDALRIRNEMMNKGFN-PTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYI 501
Query: 317 RMI 319
+I
Sbjct: 502 SLI 504
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 116/240 (48%), Gaps = 14/240 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD+ YN ++N + + A + + + ++G + + TY ++ + G+
Sbjct: 283 LAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETD 342
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F + V++ P+ + Y L+N+ G D A + +ME++ I Y L R L
Sbjct: 343 KLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGL 402
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
C G+ +EA +D++ + +P +V+Y LI G++++A I N+M N +P L
Sbjct: 403 CLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTL 462
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T N +++ ++G ++A + +EM E+ + PD T+ ++++ E
Sbjct: 463 LTYNALIQGLCKNGQGDDAENMVKEMVENG------------ITPDDSTYISLIEGLTTE 510
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 110/251 (43%), Gaps = 18/251 (7%)
Query: 93 TTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM 152
TT+ +++ + + GK E R++ + PNA+ Y ++ G+ A+ + +M
Sbjct: 115 TTFNIMLRHLCSAGKPARALELLRQMPR---PNAVTYNTVIAGFCSRGRVQAALDIMREM 171
Query: 153 -ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK-ICKVANKPLVVSYTGLIQACLDSG 210
ER GI + Y + C G+ +EA+ D+ + K KP V Y LI D G
Sbjct: 172 RERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQG 231
Query: 211 NIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
+ A ++M + + + T N++V A G EA +L +EM
Sbjct: 232 KLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMG-----------G 280
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
KGL PD++T+N +++ E +++ M G+ + +I S+ G+V+
Sbjct: 281 KGLA-PDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQ 339
Query: 330 LLEITWEHLAR 340
+ ++ R
Sbjct: 340 ETDKLFDEAVR 350
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 125/270 (46%), Gaps = 19/270 (7%)
Query: 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK--SYIPNALAYKVLVNTLWRE 139
+L +Q +P+A TY V+ + G+ + R++++ PN Y +++ +
Sbjct: 135 ELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 194
Query: 140 GKTDEAVSAVEDMERRGIVGSAALYYD-LARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
G+ DEAV ++M +G V A+ Y+ L C GK + AL+ D++ + V +
Sbjct: 195 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 254
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y L+ A G A + +M +P++ T NI++ + + G ++A+++F+ M+
Sbjct: 255 YNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMS 314
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
++G V + T+ ++ A + + + + + ++ + G+ + +
Sbjct: 315 -----------RRG-VRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNA 362
Query: 318 MILDASRAGKVE-LLEITWEHLARADRITP 346
+I S +G ++ EI E + RI P
Sbjct: 363 LINSHSTSGNIDRAFEIMGEMEKK--RIAP 390
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 148/327 (45%), Gaps = 29/327 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ +AG + ++D MR + L+P++V +N+V+
Sbjct: 190 PNAVTYNTLVAAFCRAGEVDRAERLVDMMR---------------EGGLKPNLVTFNSVV 234
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG-KYNLVYEFFRKVQKSYI 123
N + + E A V ++ ++G P +Y ++ G + + F +K +
Sbjct: 235 NGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIM 294
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + L++ + + G + AV V +M RG+ + + L C G ++AL+
Sbjct: 295 PDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLA 354
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ ++ + +P VV Y LI G + A + +M+ P++VT + ++ AY +
Sbjct: 355 VREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCK 414
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+G A +L Q+M E+ V+PD T+++++ EKR D +++K
Sbjct: 415 NGDTHSAFQLNQQMLENG------------VLPDAITYSSLIRVLCEEKRLGDAHVLFKN 462
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
M+ GL + + +I + G VE
Sbjct: 463 MISLGLQPDEVTYTSLIDGHCKEGNVE 489
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 15/227 (6%)
Query: 87 GQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEA 145
G PS Y V+ + L+ FF + + PN Y +LV L G EA
Sbjct: 118 GYAPSVLAYNAVL-LALSDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 176
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+S + DM G +A Y L C AG+ + A +D + + KP +V++ ++
Sbjct: 177 LSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNG 236
Query: 206 CLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
+G +++A +F++M K +P+ V+ N +V Y + G EA+ +F EM
Sbjct: 237 ICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMT------- 289
Query: 265 REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
+KG ++PD+ TF +++ + + + M GL N
Sbjct: 290 ----RKG-IMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMN 331
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 122/267 (45%), Gaps = 18/267 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + S+ + +AG+++ ++ MR ER L+ + + + A++
Sbjct: 295 PDVVTFTSLIHVMCKAGNLERAVGLVREMR------------ERG---LQMNEITFTALI 339
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ ++ + A +++++Q +PS Y ++ G+ + E R+++ K
Sbjct: 340 DGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVK 399
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y +++ + G T A + M G++ A Y L R LC + +A +
Sbjct: 400 PDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVL 459
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + +P V+YT LI GN++ A + ++M K P++VT ++++ +
Sbjct: 460 FKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSK 519
Query: 243 HGLFEEAMK-LFQEMAEDSNHINREYD 268
+EA + LF+ E+ N +YD
Sbjct: 520 SARTKEAQRLLFKLYHEEPVPANIKYD 546
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 101/257 (39%), Gaps = 54/257 (21%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PD+V Y+ +L+A + AF + QQ+ + G P A TY ++ V+ + +
Sbjct: 398 VKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAH 457
Query: 113 EFFRK------------------------------------VQKSYIPNALAYKVLVNTL 136
F+ V+ +P+ + Y VL+N L
Sbjct: 458 VLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGL 517
Query: 137 WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA----------GKCEEALM-QMD 185
+ +T EA + + V + Y L RC +A G C + LM + D
Sbjct: 518 SKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEAD 577
Query: 186 KICKVA---NKPLVVS-YTGLIQACLDSGNIQNAAYIFNQMKNFC--SPNLVTCNIMVKA 239
K+ + N L S Y+ LI GN+ A QM C +PN + +++
Sbjct: 578 KVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQ-CGFAPNSTSTISLIRG 636
Query: 240 YLEHGLFEEAMKLFQEM 256
E G+ EA ++ Q++
Sbjct: 637 LFEKGMVVEADQVIQQL 653
>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
Length = 659
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/366 (25%), Positives = 150/366 (40%), Gaps = 72/366 (19%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S PD + Y S+ V Q + +D R L +K ++G L PD V YN
Sbjct: 157 SCVPDVITYTSLIVGCCQT-------NALDEARKLMEKMKESG--------LTPDTVAYN 201
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQK 120
A+LN ++ Q E +L+++ + G++P +Y V+ + GKY + K ++K
Sbjct: 202 ALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEK 261
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERR------------------------- 155
P+ + Y L++ + K DEA +EDM R
Sbjct: 262 KCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADA 321
Query: 156 ----------GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
GI Y L LC AGK EEA ++ + + P VV+Y+ L+
Sbjct: 322 YRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNG 381
Query: 206 CLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
G + +A + M + C PNLVT N M+ + + G +E K+ + M E S
Sbjct: 382 LCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVS---- 437
Query: 265 REYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDAS 323
PD+ T++T++D C A + D ++ G+ + + M+
Sbjct: 438 --------CTPDVVTYSTLIDGYCKANRMQDAFAIL-------GISPDKASYSSMLEGLC 482
Query: 324 RAGKVE 329
GKVE
Sbjct: 483 STGKVE 488
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 78/347 (22%), Positives = 146/347 (42%), Gaps = 49/347 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
PDT +Y ++ L ++G +E +++ M SL K ++ +
Sbjct: 230 PDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERL 289
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
LE P ++ Y ++ R + A+ V++ + + G P TY +++ +
Sbjct: 290 LEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCK 349
Query: 105 CGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK +E V+K P+ + Y +LVN L + GK D+A +E M RG +
Sbjct: 350 AGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVT 409
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ + C AGK +E ++ + +V+ P VV+Y+ LI + +Q+A I
Sbjct: 410 FNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILGI-- 467
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED-----SNH--------INREYDKK 270
SP+ + + M++ G EEA ++ M + S+H + E +
Sbjct: 468 ---SPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDE 524
Query: 271 GLVI----------PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
L + P++YT++ +++ KR +D V ML G
Sbjct: 525 ALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKG 571
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 111/256 (43%), Gaps = 23/256 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V + ++ +AG + E V++ M+ + PD+V Y+ ++
Sbjct: 405 PNLVTFNTMIDGFCKAGKVDEGHKVLELMKEV---------------SCTPDVVTYSTLI 449
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + + + AF +L G P +Y ++E + + GK E + K P
Sbjct: 450 DGYCKANRMQDAFAIL------GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCP 503
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ Y +++ L + DEA+ ++ M RG + Y L LC + E+A+
Sbjct: 504 PTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINV 563
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+D + + P V +YT LI + A F M++ C P+ + NI++ + +
Sbjct: 564 LDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQ 623
Query: 243 HGLFEEAMKLFQEMAE 258
G E+A+++ Q M E
Sbjct: 624 SGNVEKAIEVMQLMLE 639
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 131/307 (42%), Gaps = 27/307 (8%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
ER+ +P Y A++ R + + ++ + P T+ +++ G
Sbjct: 14 ERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIG 73
Query: 107 KYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ FR K+ S P A Y +L++ L + + DEA +++M ++ AA+Y
Sbjct: 74 DLDRALSHFRGKMWCS--PTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYN 131
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-N 224
L LC GK + A + + + + P V++YT LI C + + A + +MK +
Sbjct: 132 CLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKES 191
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE-----DSNHINR---------EYDKK 270
+P+ V N ++ + EE KL +EM E D+ N +Y++
Sbjct: 192 GLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEA 251
Query: 271 GLVI---------PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILD 321
G ++ PD+ T+N+++D + D+ E + + M+ + +I
Sbjct: 252 GKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGG 311
Query: 322 ASRAGKV 328
SRA ++
Sbjct: 312 FSRADRL 318
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 99/234 (42%), Gaps = 23/234 (9%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+S PD V Y ++ +A +++ F ++ + PD Y
Sbjct: 436 VSCTPDVVTYSTLIDGYCKANRMQDAFAILG---------------------ISPDKASY 474
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-Q 119
+++L + E A V+ + +QG P+++ Y L++ + + + + + + +
Sbjct: 475 SSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSE 534
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ PN Y +L+N L + + ++A++ ++ M +G V A Y L C K +
Sbjct: 535 RGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDA 594
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
A + +P ++Y LI SGN++ A + M + C+P+ T
Sbjct: 595 AYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAAT 648
>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 504
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 147/334 (44%), Gaps = 44/334 (13%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P+ + Y S+ L + G ++E ++ D M S ++ +++ Y
Sbjct: 108 MGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVS---------------QGIKANVITY 152
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQ 119
N++++A R W+ A Q+ +G P T+ +++ + GK Y+ F ++
Sbjct: 153 NSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIK 212
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ PN + Y L+N L + D AV E M RGI Y L C++GK EE
Sbjct: 213 QGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEE 272
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC--SPNLVTCNIMV 237
A+ K+ P + +YT L++A +G I+ A +FN M+ C SP+L T +++
Sbjct: 273 AMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQ-ICGQSPSLDTYTVLL 331
Query: 238 KAYLEHGLFEEAMKLFQEMA------------------------EDSNHINREYDKKGLV 273
++G EEA+ +F+ + E + I E GLV
Sbjct: 332 DGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLV 391
Query: 274 IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
P+I T+N M++ E + + E ++ +M G
Sbjct: 392 -PNIVTYNIMINGLCKEGKLLEAERLFVQMEESG 424
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 123/258 (47%), Gaps = 14/258 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ DI++Y ++NA + +Q A + +++ + + TYGLV++ + G
Sbjct: 40 FQGDILLYGYLINALRKTRQARRAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGL 99
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ FR+ + PN + Y L+N L R GK EAV+ ++M +GI + Y L
Sbjct: 100 KMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHAS 159
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C G +EA ++ P VV++T LI G +Q A IF M K +PN+
Sbjct: 160 CRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNI 219
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N ++ H + A++LF+ M E +G+ I D+ ++NT+++
Sbjct: 220 VTYNSLLNGLCLHHQMDHAVRLFEVMVE-----------RGIKI-DVISYNTLINGYCTS 267
Query: 291 KRWDDLELVYKRMLHHGL 308
+ ++ ++++M + L
Sbjct: 268 GKTEEAMTLFRKMQYEEL 285
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/278 (20%), Positives = 117/278 (42%), Gaps = 14/278 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+P++V + ++ + A + ++ + G + YG ++ + + E
Sbjct: 6 QPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVE 65
Query: 114 FFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R++ N Y +++++L ++G + + +M GI + +Y L LC
Sbjct: 66 LHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLC 125
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
GK EA+ D++ K V++Y LI A G + A F+QM P++V
Sbjct: 126 RVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVV 185
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T ++ + G +EA K+F+ M + P+I T+N++L+
Sbjct: 186 TFTTLIDHLSKKGKVQEAYKIFELMIKQGEA------------PNIVTYNSLLNGLCLHH 233
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ D +++ M+ G+ + + +I +GK E
Sbjct: 234 QMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTE 271
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 115/272 (42%), Gaps = 18/272 (6%)
Query: 85 QQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTD 143
+ G +P+ T +++ M GK E F K+ +S + + L Y L+N L + +
Sbjct: 2 KSGYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQAR 61
Query: 144 EAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLI 203
AV M G+ Y + LC G + L ++ + P V+ Y+ LI
Sbjct: 62 RAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLI 121
Query: 204 QACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNH 262
G ++ A +F++M N++T N ++ A GL++EA + F +M +
Sbjct: 122 NGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEG-- 179
Query: 263 INREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI--- 319
++PD+ TF T++D + + + + +++ M+ G N + ++
Sbjct: 180 ----------ILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGL 229
Query: 320 -LDASRAGKVELLEITWEHLARADRITPPALI 350
L V L E+ E + D I+ LI
Sbjct: 230 CLHHQMDHAVRLFEVMVERGIKIDVISYNTLI 261
>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 155/331 (46%), Gaps = 30/331 (9%)
Query: 5 PDTVAYRSIAVTLGQAG-HIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
P+ + Y +I G+ G +K+ D+ + M+ K G +EPD + +N++
Sbjct: 267 PNLITYNTIIDACGKGGVDLKKALDIFEEMQ-------KEG--------VEPDRITFNSL 311
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSY 122
+ C R WE + V +++++G + TY +++ + G+ L ++ K+
Sbjct: 312 IAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNI 371
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN + Y +++ + G +EA+ DM+ G+ Y L G+ ++AL
Sbjct: 372 SPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALT 431
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYL 241
+ +V K VV+Y LI A G ++AA +F++MK PN++T + ++ AY
Sbjct: 432 ACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYS 491
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G+ ++A +F E K+ + PD+ +++++D+C +D ++ +
Sbjct: 492 KAGMHQDATSIFVEF------------KRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQ 539
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLE 332
M G+ N + +I R G+V+ +E
Sbjct: 540 EMTQAGIQPNIVTYNSLIDAYGRNGQVDNVE 570
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 144/317 (45%), Gaps = 36/317 (11%)
Query: 16 TLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEG 75
TLG+ G ++ DV + + K F ++ Y+A+++A R +
Sbjct: 208 TLGRLGKVEIALDVFNRAQ---KAGFGN------------NVYAYSAMVSAYGRSGRCRE 252
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL----VYEFFRKVQKSYI-PNALAYK 130
A V Q +K+ G KP+ TY +++ ACGK + + F ++QK + P+ + +
Sbjct: 253 ALKVFQAMKKAGCKPNLITYNTIID---ACGKGGVDLKKALDIFEEMQKEGVEPDRITFN 309
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
L+ R +++ +M+RRGI Y L +C G+ E A M +
Sbjct: 310 SLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLK 369
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEA 249
P VV+Y+ +I G + A +++ MK + P+ V+ N ++ Y + G F++A
Sbjct: 370 NISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDA 429
Query: 250 MKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH 309
+ ++M ++ GL D+ T+N ++DA + ++ D ++ +M GL
Sbjct: 430 LTACKDM-----------ERVGLK-ADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLV 477
Query: 310 FNAKRHLRMILDASRAG 326
N + +I S+AG
Sbjct: 478 PNVLTYSALIDAYSKAG 494
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/330 (20%), Positives = 139/330 (42%), Gaps = 45/330 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ G+ G +E + M+ + + PD V YN ++
Sbjct: 373 PNVVTYSTMIDGYGKLGCFEEAIGLYHDMK---------------ESGVRPDRVSYNTLI 417
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ + +++ A + +++ G K TY +++ GKY F K++ + +
Sbjct: 418 DIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLV 477
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN L Y L++ + G +A S + +R G+ LY L C G E+A++
Sbjct: 478 PNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVL 537
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY--------IFNQMKNFCSPNLVTCNI 235
+ ++ + +P +V+Y LI A +G + N +FN++ + + +
Sbjct: 538 LQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPINVFNKVGDRSTEIICKTLT 597
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
+ +H A+ +F EM +++ K P++ TF+ +L+AC+ +
Sbjct: 598 SQQNANDHTGVLAAVSVFHEM--------QQFGLK----PNVVTFSAILNACSRCSSLQE 645
Query: 296 LELVYKRM---------LHHGLHFNAKRHL 316
++ ++M + HGL + H+
Sbjct: 646 ASVLLEQMRFFDSWVYGIAHGLLMGLREHV 675
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 132/322 (40%), Gaps = 53/322 (16%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPS--ATTYGLVMEVML 103
LE+W +L + + +L R +WE A + + QQG S + +++ +
Sbjct: 152 LEKWSHQL-VGLEDFPYLLRELGNRGEWERALQGYEWMVQQGHLRSEWSKLASIMISTLG 210
Query: 104 ACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
GK + + F + QK+ + N AY +V+ R G+ EA+ + M++ G +
Sbjct: 211 RLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLI 270
Query: 163 LY-----------YDLARCL------------------------CSAGKC-EEALMQMDK 186
Y DL + L CS G E++ +
Sbjct: 271 TYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAE 330
Query: 187 ICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGL 245
+ + + + +Y LI A G ++ AA I + M+ SPN+VT + M+ Y + G
Sbjct: 331 MQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGC 390
Query: 246 FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
FEEA+ L+ +M E V PD ++NT++D A R+DD K M
Sbjct: 391 FEEAIGLYHDMKESG------------VRPDRVSYNTLIDIYAKLGRFDDALTACKDMER 438
Query: 306 HGLHFNAKRHLRMILDASRAGK 327
GL + + +I + GK
Sbjct: 439 VGLKADVVTYNALIDAYGKQGK 460
Score = 38.1 bits (87), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV- 111
L+P++V ++A+LNAC R + A +L+Q++ + YG+ +++ ++ V
Sbjct: 623 LKPNVVTFSAILNACSRCSSLQEASVLLEQMR----FFDSWVYGIAHGLLMGLREHVWVE 678
Query: 112 -YEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
F ++ + Y A Y L + LW G+ A V +RR +
Sbjct: 679 AQRLFDEIARMDYATGAAFYNALTDVLWHFGQRQGAQEVVVAAKRRQV 726
>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
Length = 649
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 134/302 (44%), Gaps = 36/302 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD V + + +AG + ++DSM + L+P IV YN+V
Sbjct: 189 FPDVVTHNVLIDARFRAGDVDAAIALVDSM---------------ANRGLKPGIVTYNSV 233
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
L + ++++ A V + + Q P ++ +++ G+ +F++++Q Y+
Sbjct: 234 LKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYV 293
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ +++ L+ R G+ D A + + +M+ G+V +Y + C AG EAL
Sbjct: 294 TPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALR 353
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYL 241
D++ P VV+Y L+ + +A + N+M+ +P+L T ++ Y
Sbjct: 354 VRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYC 413
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-------CAAEKRWD 294
G FE A++LF + + PD+ T+N+++D A + WD
Sbjct: 414 RQGNFENALQLFDTLLRQR------------LRPDVVTYNSLIDGMCRKGDLAKANELWD 461
Query: 295 DL 296
D+
Sbjct: 462 DM 463
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 141/324 (43%), Gaps = 29/324 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + +AG + E V D M G L PD+V YN +L
Sbjct: 330 PDGVIYTMVIGGFCRAGSMSEALRVRDEMVGF-------GCL--------PDVVTYNTLL 374
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N ++ + A +L +++++G P T+ ++ G + + F + + +
Sbjct: 375 NGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLR 434
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ + R+G +A +DM R I+ + Y L C G+ E+A
Sbjct: 435 PDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGF 494
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+D++ K N P + +Y +I+ SGN++ +M+ + P+L+T N ++ Y++
Sbjct: 495 LDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIK 554
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
A +F M +K +V PD T+N +++ + + D V+K
Sbjct: 555 EENMHGAFNVFNIM------------EKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKG 602
Query: 303 MLHHGLHFNAKRHLRMILDASRAG 326
M G+ + ++ +I AG
Sbjct: 603 MGDSGIEPDRYTYMSLINGHVTAG 626
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 114/264 (43%), Gaps = 25/264 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PD+V ++ ++ RR + + A L+++K G P Y +V+ G +
Sbjct: 293 VTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEAL 352
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ V +P+ + Y L+N L ++ + +A + +ME RG+ + L
Sbjct: 353 RVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGY 412
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C G E AL D + + +P VV+Y LI G++ A +++ M PN
Sbjct: 413 CRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNH 472
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN-REYD------------KKGL----- 272
+T +I++ ++ E G E+A EM + N N R Y+ KKG
Sbjct: 473 ITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQK 532
Query: 273 -----VIPDIYTFNTMLDACAAEK 291
V PD+ TFNT++ E+
Sbjct: 533 MRQDNVFPDLITFNTLIHGYIKEE 556
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 128/294 (43%), Gaps = 15/294 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V +N +++A R + A ++ + +G KP TY V++ + +++ E
Sbjct: 190 PDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEV 249
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
FR + Q S P+ ++ +L+ R G+ EAV ++M+ R + + L
Sbjct: 250 FRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSR 309
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
G+ + A + ++ + P V YT +I +G++ A + ++M F C P++VT
Sbjct: 310 RGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVT 369
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ + +A KL EM E V PD+ TF T++ +
Sbjct: 370 YNTLLNGLCKQHRLLDAEKLLNEMEERG------------VTPDLCTFTTLIHGYCRQGN 417
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
+++ ++ +L L + + +I R G + W+ + A I P
Sbjct: 418 FENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDM-HAREILP 470
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 108/264 (40%), Gaps = 36/264 (13%)
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA---G 175
++ P+ + + VL++ +R G D A++ V+ M RG+ Y + + LC
Sbjct: 185 KRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFD 244
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCN 234
K +E MD+ C VA P V S+ LI G ++ A + +M++ + +P++V+ +
Sbjct: 245 KAKEVFRTMDQ-CSVA--PDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFS 301
Query: 235 IMVKAYLEHGLFEEAMKLFQEMA------------------------EDSNHINREYDKK 270
++ + G + A +EM ++ + E
Sbjct: 302 CLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGF 361
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE- 329
G +PD+ T+NT+L+ + R D E + M G+ + +I R G E
Sbjct: 362 G-CLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFEN 420
Query: 330 ---LLEITWEHLARADRITPPALI 350
L + R D +T +LI
Sbjct: 421 ALQLFDTLLRQRLRPDVVTYNSLI 444
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 75/174 (43%), Gaps = 21/174 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
P+ + Y + + + G +++ F +D M S+ K ++G +++
Sbjct: 470 PNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQF 529
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L+ PD++ +N +++ ++ + GAF V ++++ +P A TY +++
Sbjct: 530 LQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSE 589
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
G F+ + S I P+ Y L+N G + +A ++M RG
Sbjct: 590 QGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGF 643
>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 794
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 131/276 (47%), Gaps = 14/276 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD+ YN +++ C +E A + +++K G +P A TY +++V +
Sbjct: 246 LAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAM 305
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E ++++ S+ P+ + Y LV+ R G ++A+ M +GI Y L
Sbjct: 306 EVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGF 365
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
+AGK E A+ +++ KV KP + ++ LI+ D G + +F ++K CSP++
Sbjct: 366 VNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDI 425
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N ++ + ++G+ E +F+EM K+ P+ TFNT++ A
Sbjct: 426 VTWNTLLAVFGQNGMDSEVSGVFEEM------------KRSRFAPERDTFNTLISAYGRC 473
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+D YKRML G+ + + ++ +R G
Sbjct: 474 GSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGG 509
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/350 (19%), Positives = 135/350 (38%), Gaps = 47/350 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLERW--- 49
PD V Y ++ G++ KE +V+ M S L + G LE
Sbjct: 283 PDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVL 342
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
D ++PD+ Y +L+ V + E A V +++++ G KP+ T+ ++++
Sbjct: 343 KRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGD 402
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK+ + + F++++ P+ + + L+ + G E E+M+R
Sbjct: 403 RGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDT 462
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ L G ++A+ ++ + P + +Y ++ G + + + +MK
Sbjct: 463 FNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMK 522
Query: 224 N-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE------------------------ 258
+ C PN VT + ++ AY E L +E+
Sbjct: 523 DGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLV 582
Query: 259 DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
++ E+ K+G + PD+ T N ML +K + M GL
Sbjct: 583 ETERAFLEFRKRG-ISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGL 631
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 137/338 (40%), Gaps = 60/338 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM---RSLPKKK-FKT--------GTLER---- 48
PD V + ++ GQ G E+ V + M R P++ F T G+ ++
Sbjct: 423 PDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAA 482
Query: 49 ----WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ + PD+ YNAVL R WE + VL ++K G KP+ TY ++
Sbjct: 483 YKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLH---- 538
Query: 105 CGKYNLVYEFFRKVQKSYIPNALA----------YKVLVNTL-WREGKTD---EAVSAVE 150
Y R+V++ NALA + VL+ TL K D E A
Sbjct: 539 ------AYANGREVERM---NALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLVETERAFL 589
Query: 151 DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG 210
+ +RGI + +A ++ + + + SY L+ +
Sbjct: 590 EFRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSRTE 649
Query: 211 NIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
N + IF + + P++++ NI++ AY + + +EA ++ +EM K
Sbjct: 650 NFHKSEQIFREILDKGIEPDVISYNIVIYAYCRNDMMDEAKRIIEEM------------K 697
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
+PD+ T+NT + A AA+ + + V + M+ G
Sbjct: 698 VPAPVPDVVTYNTFIAAYAADSMFVEAIDVIRYMIKQG 735
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 84/216 (38%), Gaps = 37/216 (17%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PD+ NA+L+ R+K A +L + + G S T+Y +M + ++
Sbjct: 596 ISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSE 655
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ FR++ K P+ ++Y +++ R DEA +E+M+ V
Sbjct: 656 QIFREILDKGIEPDVISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPV------------- 702
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMKNFCSPNL 230
P VV+Y I A DS ++ I +K C PN
Sbjct: 703 ----------------------PDVVTYNTFIAAYAADSMFVEAIDVIRYMIKQGCKPNH 740
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
T N +V Y + L +EA Q + + I+ +
Sbjct: 741 NTYNSIVDWYCKLKLRDEACSFVQNLGDLDPQISED 776
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 14/102 (13%)
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGL-FEEAMKLF 253
V YT LI A ++ ++A +F +MK C P L+T N ++ Y + G+ + + + L
Sbjct: 179 VYGYTSLITAYANNKKYRDALKVFGKMKEVGCEPTLITYNAILNVYGKMGMPWAKIIALV 238
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
Q+M K + PD+ T+NT++ C A +++
Sbjct: 239 QDM------------KCHGLAPDLCTYNTLISCCRAGSLYEE 268
>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 155/331 (46%), Gaps = 30/331 (9%)
Query: 5 PDTVAYRSIAVTLGQAG-HIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
P+ + Y +I G+ G +K+ D+ D M+ K G +EPD + +N++
Sbjct: 268 PNLITYNTIIDACGKGGVDLKQALDIFDEMQ-------KEG--------VEPDRITFNSL 312
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSY 122
+ C R WE + V +++++G + T+ +++ + G+ L ++ K+
Sbjct: 313 IAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNI 372
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN + Y +++ + G +EA+S DM+ G+ Y L G+ ++AL+
Sbjct: 373 SPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALI 432
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYL 241
+ +V K VV+Y LI A G ++AA +F++MK PN++T + ++ +Y
Sbjct: 433 ACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYS 492
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G+ ++ +F E K+ + PD+ +++++D+C +D ++ +
Sbjct: 493 KAGMHQDVSNVFTEF------------KRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQ 540
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLE 332
M G+ N + +I R G+ + LE
Sbjct: 541 EMTQAGIQPNIVTYNSLIDAYGRYGQADKLE 571
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 145/317 (45%), Gaps = 36/317 (11%)
Query: 16 TLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEG 75
TLG+ G ++ DV + + K F ++ Y+A+++A R +
Sbjct: 209 TLGRLGKVEIALDVFNRAQ---KAGFGN------------NVYAYSAMVSAYGRSGRCRE 253
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL----VYEFFRKVQKSYI-PNALAYK 130
A V Q +K+ G KP+ TY +++ ACGK + + F ++QK + P+ + +
Sbjct: 254 ALKVFQAMKKAGCKPNLITYNTIID---ACGKGGVDLKQALDIFDEMQKEGVEPDRITFN 310
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
L+ R G +++ +M+RRGI + L +C G+ E A M +
Sbjct: 311 SLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGK 370
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEA 249
P VV+Y+ +I G + A +++ MK + P+ V+ N ++ Y + G F++A
Sbjct: 371 NISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDA 430
Query: 250 MKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH 309
+ ++M ++ GL D+ T+N ++DA + ++ D ++ +M GL
Sbjct: 431 LIACKDM-----------ERVGLK-ADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLV 478
Query: 310 FNAKRHLRMILDASRAG 326
N + +I S+AG
Sbjct: 479 PNVLTYSALIDSYSKAG 495
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/324 (22%), Positives = 134/324 (41%), Gaps = 57/324 (17%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAF----WVLQQLKQQGQKPSATTYGLVMEV 101
LE+W +L + + +L R +WE A W++QQ+ + + + +++
Sbjct: 153 LEKWSHQL-VGLEDFPYLLRELGNRGEWERALQGYEWMVQQVHLRSEWSKLAS--IMIST 209
Query: 102 MLACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ GK + + F + QK+ + N AY +V+ R G+ EA+ + M++ G +
Sbjct: 210 LGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPN 269
Query: 161 AALYYDLARCLCSAG-KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219
Y + G ++AL D++ K +P +++ LI C G +++ +F
Sbjct: 270 LITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVF 329
Query: 220 NQMKN----------------FC--------------------SPNLVTCNIMVKAYLEH 243
+M+ C SPN+VT + M+ Y +
Sbjct: 330 AEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKL 389
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G FEEA+ L+ +M E V PD ++NT++D A R+DD + K M
Sbjct: 390 GCFEEAISLYHDMKESG------------VRPDRVSYNTLIDIYAKLGRFDDALIACKDM 437
Query: 304 LHHGLHFNAKRHLRMILDASRAGK 327
GL + + +I + GK
Sbjct: 438 ERVGLKADVVTYNALIDAYGKQGK 461
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 102/226 (45%), Gaps = 18/226 (7%)
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
++++TL R GK + A+ ++ G + Y + +G+C EAL + K
Sbjct: 205 IMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKA 264
Query: 191 ANKPLVVSYTGLIQACLDSG-NIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEE 248
KP +++Y +I AC G +++ A IF++M K P+ +T N ++ GL+E+
Sbjct: 265 GCKPNLITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWED 324
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+ ++F EM ++G + DI+TFNT++DA + + + M +
Sbjct: 325 SQRVFAEM-----------QRRG-IEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNI 372
Query: 309 HFNAKRHLRMILDASRAG----KVELLEITWEHLARADRITPPALI 350
N + MI + G + L E R DR++ LI
Sbjct: 373 SPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLI 418
>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
Length = 500
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 137/309 (44%), Gaps = 19/309 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+ +N V+ R E A V Q + + G KP +Y +++ + GK + +
Sbjct: 43 PDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKI 102
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ V + P+ AY LV L + + D A S ++M R G ++Y+L LC
Sbjct: 103 LSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQ 162
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
AGK ++A + ++ K +P V Y L+ SG ++ A +F +MK+ CSP++VT
Sbjct: 163 AGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVT 222
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ A + EE KLF+ M + +P++ TF+T++
Sbjct: 223 YNTLLDAVCKARRVEEGCKLFEAM------------RAAGYVPNVITFSTLIHGLCRTGE 270
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPA 348
+ V+ ML G N + +I RA KV EL E + D + +
Sbjct: 271 LEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNS 330
Query: 349 LIKERFCNR 357
LI +C R
Sbjct: 331 LIAG-YCKR 338
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/354 (23%), Positives = 152/354 (42%), Gaps = 38/354 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM----------------RSLPKKKFKTGTLER 48
PD V+Y + L + G + E ++ M R+L K +
Sbjct: 78 PDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSL 137
Query: 49 WDPRLE----PD-IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
+D + PD ++ Y +L C + + + A +Q+ + G +P+ Y +++ +
Sbjct: 138 FDEMIRGGHHPDRLMFYELILGLC-QAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLC 196
Query: 104 ACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+ G+ F +++ S P+ + Y L++ + + + +E E M G V +
Sbjct: 197 SSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVI 256
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+ L LC G+ E+AL + + KP +YT LI + + A +F +M
Sbjct: 257 TFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKM 316
Query: 223 KNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
C P+ V N ++ Y + G +EA KL++EM+ + + P I TFN
Sbjct: 317 TQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAG-----------LQPTIVTFN 365
Query: 282 TMLDA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEI 333
T++D C K ELV + M GL ++ + +I SRA K+ E LE+
Sbjct: 366 TLIDGFCKLGKLGRANELVAE-MGTKGLAADSCTYRILIAGLSRATKLDEALEV 418
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 127/303 (41%), Gaps = 30/303 (9%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD + + + + L QAG +K D + + +PK +P++ VYN +
Sbjct: 147 HPDRLMFYELILGLCQAGKVK---DASERFKQMPKHG------------CQPNVPVYNVL 191
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-Y 122
L+ Q E A + ++K P TY +++ + + + F ++ + Y
Sbjct: 192 LHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGY 251
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+PN + + L++ L R G+ ++A+ M G + Y L LC A K +A
Sbjct: 252 VPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARE 311
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--PNLVTCNIMVKAY 240
+K+ + P V+Y LI G++ A ++ +M P +VT N ++ +
Sbjct: 312 LFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGF 371
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ G A +L EM KGL D T+ ++ + + D+ VY
Sbjct: 372 CKLGKLGRANELVAEMG-----------TKGLA-ADSCTYRILIAGLSRATKLDEALEVY 419
Query: 301 KRM 303
K+M
Sbjct: 420 KQM 422
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 119/294 (40%), Gaps = 59/294 (20%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S PD V Y ++ + +A ++E + ++MR+ G + P+++ ++
Sbjct: 215 SCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRA-------AGYV--------PNVITFS 259
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
+++ R + E A V + + G KP+ TY ++ + K E F K+ ++
Sbjct: 260 TLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQA 319
Query: 122 YI-PNALAYKVLV------------NTLWRE------------------------GKTDE 144
I P+A+AY L+ L+RE GK
Sbjct: 320 CIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGR 379
Query: 145 AVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL---MQMDKICKVANKPLVVSYTG 201
A V +M +G+ + Y L L A K +EAL QM + + + VS+ G
Sbjct: 380 ANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVG 439
Query: 202 LIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
+GNI A +F K+ PN T I+ ++ ++ G E+A KL +
Sbjct: 440 ---GLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLME 490
>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
Length = 447
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 136/295 (46%), Gaps = 30/295 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+ D ++ +I L ++ +++ +++ ++R R D V YN +
Sbjct: 152 FQDLASFNTILDVLCKSKRVEKAYELFRALRG----------------RFSVDTVTYNVI 195
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
LN K+ VL+++ ++G P+ TTY +++ G+ +EFF +++K
Sbjct: 196 LNGWCLIKRTPKTLEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDC 255
Query: 124 P-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+ + Y +V+ G+ A + ++M R G++ S A Y + + LC E A++
Sbjct: 256 EIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVV 315
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYL 241
+++ + +P V +Y LI+ +G + +M+N C PN T N+M++ Y
Sbjct: 316 MFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYS 375
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
E E+A+ LF++M G +P++ T+N ++ KR +D+
Sbjct: 376 ECSEVEKALGLFEKMGS------------GDCLPNLDTYNILISGMFVRKRSEDM 418
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 119/266 (44%), Gaps = 21/266 (7%)
Query: 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGK 141
+ + G ++ +++V+ + YE FR ++ + + + Y V++N +
Sbjct: 145 NMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKR 204
Query: 142 TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA---LMQMDKI-CKVANKPLVV 197
T + + +++M RGI + Y + + AG+ A ++M K C++ VV
Sbjct: 205 TPKTLEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEID----VV 260
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+YT ++ +G I+ A +F++M + P++ T N M++ + E A+ +F+EM
Sbjct: 261 TYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEM 320
Query: 257 AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316
+ R Y+ P++ T+N ++ + E + +RM + G N + +
Sbjct: 321 ------VRRGYE------PNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYN 368
Query: 317 RMILDASRAGKVELLEITWEHLARAD 342
MI S +VE +E + D
Sbjct: 369 MMIRYYSECSEVEKALGLFEKMGSGD 394
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 47/262 (17%), Positives = 103/262 (39%), Gaps = 28/262 (10%)
Query: 92 ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVE 150
A+++ L +++ + V+ +++ I P+ + ++ GK D+AV
Sbjct: 85 ASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFL 144
Query: 151 DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA-CLDS 209
+M G A + + LC + + E+A ++ + + V+Y ++ CL
Sbjct: 145 NMHEHGCFQDLASFNTILDVLCKSKRVEKAY-ELFRALRGRFSVDTVTYNVILNGWCLIK 203
Query: 210 GNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN----- 264
+ + ++ +PNL T N M+K + G A + F EM + I+
Sbjct: 204 RTPKTLEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYT 263
Query: 265 -------------------REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
E ++G V+P + T+N M+ + ++ ++++ M+
Sbjct: 264 TVVHGFGVAGEIKRARNVFDEMIREG-VLPSVATYNAMIQVLCKKDNVENAVVMFEEMVR 322
Query: 306 HGLHFNAKRHLRMILDASRAGK 327
G N + +I AG+
Sbjct: 323 RGYEPNVTTYNVLIRGLFHAGE 344
>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 550
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 144/333 (43%), Gaps = 42/333 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD VAY +I +L + + D +D + + +K + P++V Y A++
Sbjct: 188 PDIVAYNAIIDSLCKTRRVN---DALDFFKEIGRKGIR------------PNVVTYTALV 232
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N +W A +L+ + ++ P+ TY +++ + GK E F + V+ S
Sbjct: 233 NGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSID 292
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L+N L + DEA + M +G Y L C A + E+ +
Sbjct: 293 PDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKL 352
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
K+ + V+Y LIQ G++ A F+QM +F SP++ T NI++ +
Sbjct: 353 FRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCD 412
Query: 243 HGLFEEAMKLFQEM------------------------AEDSNHINREYDKKGLVIPDIY 278
+GL E+A+ +F++M ED+ + KGL PDI
Sbjct: 413 NGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLK-PDIV 471
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
T+ TM+ + ++E +Y +M GL N
Sbjct: 472 TYTTMMSGLCTKGLQHEVEALYTKMKQEGLMKN 504
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 125/278 (44%), Gaps = 14/278 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
PDIV YNA++++ + ++ A +++ ++G +P+ TY ++ + G++N
Sbjct: 187 RPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAAR 246
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R + K I PN + Y L++ + GK EA E+M R I Y L LC
Sbjct: 247 LLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLC 306
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
+ +EA D + P VVSY LI + +++ +F +M + N V
Sbjct: 307 LHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTV 366
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N +++ + + G ++A + F +M D G V PDI+T+N +L
Sbjct: 367 TYNTLIQGFFQVGDVDKAQEFFSQM-----------DSFG-VSPDIWTYNILLGGLCDNG 414
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ ++++ M + + + +I + GKVE
Sbjct: 415 LLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVE 452
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 130/279 (46%), Gaps = 14/279 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ D+ +N V+N Q A VL ++ + G +P T G ++ + +
Sbjct: 116 IRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAV 175
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
K V+ Y P+ +AY ++++L + + ++A+ +++ R+GI + Y L L
Sbjct: 176 SLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGL 235
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C++G+ +A + + K P V++Y+ L+ A + +G + A IF +M P++
Sbjct: 236 CNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDI 295
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT + ++ H +EA ++F M KG PD+ ++NT+++
Sbjct: 296 VTYSSLINGLCLHDRIDEANQMFDLMVS-----------KG-CFPDVVSYNTLINGFCKA 343
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
KR +D ++++M GL N + +I + G V+
Sbjct: 344 KRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVD 382
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/243 (19%), Positives = 105/243 (43%), Gaps = 18/243 (7%)
Query: 114 FFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
FR++ K+ P+ + + L++ + + K D +S + ME GI + + C C
Sbjct: 72 LFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFC 131
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLV 231
+ AL + K+ K+ +P V+ L+ + +A + ++M P++V
Sbjct: 132 CCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIV 191
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
N ++ + + +A+ F+E+ +KG + P++ T+ +++
Sbjct: 192 AYNAIIDSLCKTRRVNDALDFFKEIG-----------RKG-IRPNVVTYTALVNGLCNSG 239
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA----DRITPP 347
RW+D + + M+ + N + ++ + GKV + +E + R D +T
Sbjct: 240 RWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYS 299
Query: 348 ALI 350
+LI
Sbjct: 300 SLI 302
>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62670, mitochondrial; Flags: Precursor
gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
Length = 630
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/344 (22%), Positives = 158/344 (45%), Gaps = 30/344 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V S+ + I E ++D M F TG +P+ V +N ++
Sbjct: 149 PNIVTLSSLLNGYCHSKRISEAVALVDQM-------FVTG--------YQPNTVTFNTLI 193
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + A ++ ++ +G +P TYG+V+ + G +L + K+++ +
Sbjct: 194 HGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLE 253
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P L Y +++ L + D+A++ ++ME +GI + Y L CLC+ G+ +A
Sbjct: 254 PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 313
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + + P V +++ LI A + G + A ++++M K P++VT + ++ +
Sbjct: 314 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 373
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
H +EA ++F+ M S H PD+ T+NT++ KR ++ V++
Sbjct: 374 HDRLDEAKQMFEFMV--SKH----------CFPDVVTYNTLIKGFCKYKRVEEGMEVFRE 421
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
M GL N + +I +AG ++ + ++ + +D + P
Sbjct: 422 MSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMV-SDGVPP 464
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 103/207 (49%), Gaps = 8/207 (3%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V YN ++ + K+ E V +++ Q+G + TY ++++ + G ++ E
Sbjct: 394 PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 453
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F++ V PN + Y L++ L + GK ++A+ E ++R + + Y + +C
Sbjct: 454 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 513
Query: 174 AGKCEEALMQMDKICKVA---NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PN 229
AGK E+ D C ++ KP VV+Y +I G+ + A +F +MK + PN
Sbjct: 514 AGKVEDGW---DLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 570
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEM 256
N +++A L G E + +L +EM
Sbjct: 571 SGCYNTLIRARLRDGDREASAELIKEM 597
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/338 (22%), Positives = 145/338 (42%), Gaps = 41/338 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y S+ L G + ++ M +ER ++ PD+ ++A++
Sbjct: 289 PNVVTYSSLISCLCNYGRWSDASRLLSDM------------IER---KINPDVFTFSALI 333
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNLVYEFFRKVQ 119
+A V+ + A + ++ ++ PS TY G M L K ++EF V
Sbjct: 334 DAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQ--MFEFM--VS 389
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K P+ + Y L+ + + +E + +M +RG+VG+ Y L + L AG C+
Sbjct: 390 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 449
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A ++ P +++Y L+ +G ++ A +F + ++ P + T NIM++
Sbjct: 450 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 509
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G E+ LF ++ KG V PD+ +NTM+ + ++ +
Sbjct: 510 GMCKAGKVEDGWDLFCNLS-----------LKG-VKPDVVAYNTMISGFCRKGSKEEADA 557
Query: 299 VYKRMLHHGLHFNAKRHLRMI----LDASRAGKVELLE 332
++K M G N+ + +I D R EL++
Sbjct: 558 LFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIK 595
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/298 (18%), Positives = 129/298 (43%), Gaps = 16/298 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P I+ ++ +L+A + +++ + +Q++ G + TY +++ + L
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y PN + L+N + EAV+ V+ M G + + L L
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
K EA+ +D++ +P +V+Y ++ G+ A + N+M + P ++
Sbjct: 199 HNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLI 258
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ ++ ++A+ LF+EM + KG + P++ T+++++ R
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEM-----------ETKG-IRPNVVTYSSLISCLCNYGR 306
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
W D + M+ ++ + +I + GK+ E ++ + + R P+++
Sbjct: 307 WSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK--RSIDPSIV 362
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 46/237 (19%), Positives = 88/237 (37%), Gaps = 57/237 (24%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTL----- 46
+PD V Y ++ + ++E +V M L + F+ G
Sbjct: 393 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 452
Query: 47 ---ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
E + P+I+ YN +L+ + + E A V + L++ +P+ TY +++E M
Sbjct: 453 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 512
Query: 104 ACGK----------------------YN-LVYEFFRKVQK-------------SYIPNAL 127
GK YN ++ F RK K +PN+
Sbjct: 513 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 572
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
Y L+ R+G + + +++M G G A+ L + G+ +++ + M
Sbjct: 573 CYNTLIRARLRDGDREASAELIKEMRSCGFAGDAST-IGLVTNMLHDGRLDKSFLDM 628
>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Brachypodium distachyon]
Length = 801
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 137/308 (44%), Gaps = 25/308 (8%)
Query: 33 MRSLPKKKFKTGTLERWDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ 88
M L K+ L+ +D LE PD+ +Y +L++ + E A +L +K+ G
Sbjct: 221 MDGLCKRGMAVDALKMFDEMLERGIVPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGC 280
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVS 147
P TY + + + G+ + + F +Q + + Y L++ L++ G+ DE +S
Sbjct: 281 PPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLS 340
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
+M + I LY L R AG+ ++A + +D++ P Y L++A
Sbjct: 341 YYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALF 400
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
D GNI A + ++M +N + T NIM+ + GL ++AM++F EM E H
Sbjct: 401 DVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHGCH---- 456
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHF--NAKRHLRMILDASR 324
P + T+N ++D ++ RML H + N LR+ L A++
Sbjct: 457 --------PTVMTYNALIDGLYRAGMLEE-----ARMLFHKMEMGNNPSLFLRLTLGANQ 503
Query: 325 AGKVELLE 332
E L
Sbjct: 504 VRDTESLR 511
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 135/325 (41%), Gaps = 29/325 (8%)
Query: 7 TVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNA 66
+ A+R++ + AG +E + M D P VYNAV
Sbjct: 144 SAAFRALVLAHSSAGRHQEAVEAFSRM---------------GDFDCRPTAFVYNAVFQV 188
Query: 67 CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG-KYNLVYEFFRKVQKSYIPN 125
V R A + ++ G P++TTY ++M+ + G + + F +++ +P+
Sbjct: 189 LVDRGVILLALALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERGIVPD 248
Query: 126 ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMD 185
Y VL+++L EG+ ++A + M+ G Y LC AG+ +EA + +
Sbjct: 249 VKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHRFE 308
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNI-QNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHG 244
+ ++ Y+ LI +G + +Y + SP++ I+++ + E G
Sbjct: 309 LLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAG 368
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
++A L EM + KG V PD + +NT+L A D + + ML
Sbjct: 369 RTKDAFLLLDEMKD-----------KGFV-PDTFCYNTLLKALFDVGNIDRAQSLMSEML 416
Query: 305 HHGLHFNAKRHLRMILDASRAGKVE 329
+ + ++ H MI + G ++
Sbjct: 417 QNNVVLDSTTHNIMICGLCKKGLID 441
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 13/183 (7%)
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
A+ D G+ +A + L SAG+ +EA+ ++ +P Y + Q +
Sbjct: 131 ALADARAAGLPAPSAAFRALVLAHSSAGRHQEAVEAFSRMGDFDCRPTAFVYNAVFQVLV 190
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
D G I A ++N+M + C PN T +++ + G+ +A+K+F EM E
Sbjct: 191 DRGVILLALALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERG------ 244
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
++PD+ + +L + E R +D + M +G + + + +AG
Sbjct: 245 ------IVPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAG 298
Query: 327 KVE 329
+V+
Sbjct: 299 RVD 301
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 102/267 (38%), Gaps = 19/267 (7%)
Query: 90 PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAV 149
PSA LV+ A V F R P A Y + L G A++
Sbjct: 143 PSAAFRALVLAHSSAGRHQEAVEAFSRMGDFDCRPTAFVYNAVFQVLVDRGVILLALALY 202
Query: 150 EDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS 209
M G + ++ Y L LC G +AL D++ + P V YT L+ + +
Sbjct: 203 NRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERGIVPDVKIYTVLLSSLCNE 262
Query: 210 GNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD 268
G I++A + MK N C P+ VT + + + G +EA F E+ +D
Sbjct: 263 GRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHRF-ELLQDGGF------ 315
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
GL+ ++ ++D R+D+ Y ML + + + +I + AG+
Sbjct: 316 TLGLI-----GYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGR- 369
Query: 329 ELLEITWEHLARADRITPPALIKERFC 355
T + D + + + FC
Sbjct: 370 -----TKDAFLLLDEMKDKGFVPDTFC 391
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 10/142 (7%)
Query: 13 IAVTLG--QAGHIKELFDVIDSM----RSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNA 66
+ +TLG Q + L ++D M + L K G +E + PD+V YN ++N
Sbjct: 495 LRLTLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESG---VVPDVVTYNTLING 551
Query: 67 CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YIPN 125
+ K +GA + ++L+ +G P TYG +++ + + N F+ + +S P+
Sbjct: 552 LCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGLWRAHRENDATMLFQNILRSGGFPS 611
Query: 126 ALAYKVLVNTLWREGKTDEAVS 147
Y ++ +L R K +A++
Sbjct: 612 LPIYNTMMRSLCRMKKLSQAIN 633
>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
Length = 716
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 139/335 (41%), Gaps = 42/335 (12%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M PD + Y S+ +AG++KE + G L+R L P ++ Y
Sbjct: 366 MGLLPDLITYNSLINGYCKAGNLKEALWLF-------------GDLKRAG--LAPSVLTY 410
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQ 119
N +L+ R E A Q++ +QG +P +TY ++M +V EFF + +
Sbjct: 411 NILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLS 470
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K P+ AY ++ G T EA E M RGI Y LC +G ++
Sbjct: 471 KGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKD 530
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A + K+ +P ++YT LI A + G ++ A IF+ M + P+ VT + +
Sbjct: 531 AYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIH 590
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHIN------------------------REYDKKGLVI 274
AY G A FQ+M E+ N E ++GL
Sbjct: 591 AYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLS- 649
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH 309
P+ YT+ ++D E W++ +Y M HG+H
Sbjct: 650 PNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIH 684
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 145/323 (44%), Gaps = 29/323 (8%)
Query: 31 DSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ--GQ 88
D MRS+ + + G +EP IV YN +L++ R + + A +L++++ + G
Sbjct: 213 DDMRSVYAEMLQLG--------IEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGC 264
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSA 148
PS TY +V+ + G+ + +++ S +A + L+ + G ++A +
Sbjct: 265 LPSDVTYNVVINGLARKGELEKAAQLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGAL 324
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+ME GIV + Y + + +G E A M+ ++ + P +++Y LI
Sbjct: 325 QLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCK 384
Query: 209 SGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
+GN++ A ++F +K +P+++T NI++ Y G EEA + QEM E
Sbjct: 385 AGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQ----- 439
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH-----FNAKRHLRMILDA 322
PD+ T+ +++ + + + ML GL +N + +IL
Sbjct: 440 -------PDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELIL-G 491
Query: 323 SRAGKVELLEITWEHLARADRIT 345
S + +L E+ +D +T
Sbjct: 492 STSEAFQLTEVMISRGISSDTVT 514
>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/348 (22%), Positives = 149/348 (42%), Gaps = 31/348 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V S+ I E ++D M + K PD V +N ++
Sbjct: 149 PDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYK---------------PDTVTFNTLI 193
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + A ++ ++ +G +P TYG V+ + G +L +K++K I
Sbjct: 194 HGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE 253
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + Y +++ L + D+A ME +GI Y L CLC+ G+ +A
Sbjct: 254 ANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRL 313
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + + P VV++ LI A G + A +F++M + PN+VT N ++ +
Sbjct: 314 LSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCM 373
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
H +EA ++F M +PD+ T+NT++ KR ++ +++
Sbjct: 374 HDRLDEAQQIFTLMVSKD------------CLPDVVTYNTLIKGFCKAKRVEEGMELFRE 421
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
M GL N + +I +AG ++ + ++ + +D + PP +I
Sbjct: 422 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMV-SDGV-PPDII 467
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 149/351 (42%), Gaps = 34/351 (9%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL-----ERWD--- 50
M PDTV + ++ L E +ID M R F GT+ +R D
Sbjct: 180 MGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDL 239
Query: 51 ----------PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
++E ++V+YN +++ + K + AF + +++ +G KP TY ++
Sbjct: 240 ALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLIS 299
Query: 101 VMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+ G+++ +++ PN + + L++ +EGK EA ++M +R I
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP 359
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219
+ Y L C + +EA + P VV+Y LI+ + ++ +F
Sbjct: 360 NIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELF 419
Query: 220 NQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
+M + N VT N +++ + G + A K+F++M D V PDI
Sbjct: 420 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG------------VPPDII 467
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
T++ +LD + + +V++ + + N + MI +AGKVE
Sbjct: 468 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVE 518
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 140/324 (43%), Gaps = 31/324 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+ V Y +I L + H+ + FD+ + M + ++PD+ YN++++
Sbjct: 255 NVVIYNTIIDGLCKYKHMDDAFDLFNKMET---------------KGIKPDVFTYNSLIS 299
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIP 124
+W A +L + ++ P+ T+ +++ GK + F + +Q+S P
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP 359
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N + Y L+N + DEA M + + Y L + C A + EE +
Sbjct: 360 NIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELF 419
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
++ + V+Y LIQ +G+ A IF +M + P+++T +I++ ++
Sbjct: 420 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 479
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKR 302
G E+A+ +F EY +K + P+IYT+N M++ C A K D +L
Sbjct: 480 GKLEKALVVF------------EYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSL 527
Query: 303 MLHHGLHFNAKRHLRMILDASRAG 326
L G+ N + MI R G
Sbjct: 528 SL-KGVKPNVIIYTTMISGFCRKG 550
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 114/254 (44%), Gaps = 14/254 (5%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-V 118
Y+ +LN RR Q A VL ++ + G +P T ++ + + + V
Sbjct: 119 YSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMV 178
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ Y P+ + + L++ L+ K EAV+ ++ M RG Y + LC G +
Sbjct: 179 EMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDID 238
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMV 237
AL + K+ K + VV Y +I ++ +A +FN+M+ P++ T N ++
Sbjct: 239 LALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLI 298
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+G + +A +L +M E IN P++ TFN+++DA A E + + E
Sbjct: 299 SCLCNYGRWSDASRLLSDMIE--RKIN----------PNVVTFNSLIDAFAKEGKLIEAE 346
Query: 298 LVYKRMLHHGLHFN 311
++ M+ + N
Sbjct: 347 KLFDEMIQRSIDPN 360
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/276 (19%), Positives = 117/276 (42%), Gaps = 14/276 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P I+ ++ +L+A + +++ + +Q++ G + TY +++ + L
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFCRRSQLPLALAV 138
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y P+ + L+N + EAV+ V+ M G + L L
Sbjct: 139 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFL 198
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
K EA+ +D++ +P + +Y ++ G+I A + +M K N+V
Sbjct: 199 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVI 258
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ ++ ++A LF +M + KG + PD++T+N+++ R
Sbjct: 259 YNTIIDGLCKYKHMDDAFDLFNKM-----------ETKG-IKPDVFTYNSLISCLCNYGR 306
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
W D + M+ ++ N +I ++ GK+
Sbjct: 307 WSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKL 342
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 16/165 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+TV Y ++ L QAG D + + KK G + PDI+ Y+ +L+
Sbjct: 430 NTVTYNTLIQGLFQAGDC-------DMAQKIFKKMVSDG--------VPPDIITYSILLD 474
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIP 124
+ + E A V + L++ +P+ TY +++E M GK ++ F + K P
Sbjct: 475 GLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 534
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
N + Y +++ R+G +EA + +M+ G + + Y L R
Sbjct: 535 NVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIR 579
>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
Length = 1244
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/344 (22%), Positives = 158/344 (45%), Gaps = 30/344 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V S+ + I E ++D M F TG +P+ V +N ++
Sbjct: 763 PNIVTLSSLLNGYCHSKRISEAVALVDQM-------FVTG--------YQPNTVTFNTLI 807
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + A ++ ++ +G +P TYG+V+ + G +L + K+++ +
Sbjct: 808 HGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLE 867
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P L Y +++ L + D+A++ ++ME +GI + Y L CLC+ G+ +A
Sbjct: 868 PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 927
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + + P V +++ LI A + G + A ++++M K P++VT + ++ +
Sbjct: 928 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 987
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
H +EA ++F+ M S H PD+ T+NT++ KR ++ V++
Sbjct: 988 HDRLDEAKQMFEFMV--SKH----------CFPDVVTYNTLIKGFCKYKRVEEGMEVFRE 1035
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
M GL N + +I +AG ++ + ++ + +D + P
Sbjct: 1036 MSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMV-SDGVPP 1078
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 144/332 (43%), Gaps = 40/332 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD VAY +I +L + + + FD FK +ER R P++V Y A++
Sbjct: 291 PDIVAYNAIIDSLCKTKRVNDAFDF-----------FKE--IERKGIR--PNVVTYTALV 335
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N +W A +L + ++ P+ TY +++ + GK E F + V+ S
Sbjct: 336 NGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSID 395
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L+N L + DEA + M +G + Y L C A + E+ +
Sbjct: 396 PDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKL 455
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
++ + V+Y LIQ +G++ A F+QM F SP++ T NI++ +
Sbjct: 456 FREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCD 515
Query: 243 HGLFEEAMKLFQEMAEDSNHIN--------REYDKKGLV---------------IPDIYT 279
+G E+A+ +F++M + ++ R K G V PDI T
Sbjct: 516 NGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVT 575
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
+ TM+ + ++E +Y +M GL N
Sbjct: 576 YTTMMSGLCTKGLLHEVEALYTKMKQEGLMKN 607
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 133/301 (44%), Gaps = 25/301 (8%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPD V +++N RR + A ++ ++ + G KP Y +++ + + N ++
Sbjct: 255 EPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFD 314
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
FF+++++ I PN + Y LVN L + +A + DM ++ I + Y L
Sbjct: 315 FFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFV 374
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
GK EA +++ +++ P +V+Y+ LI I A +F+ M C ++V
Sbjct: 375 KNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVV 434
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAED---SNHINREYDKKGL---------------- 272
+ N ++ + + E+ MKLF+EM++ SN + +G
Sbjct: 435 SYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM 494
Query: 273 ----VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+ PDI+T+N +L + ++++ M + + + +I + GKV
Sbjct: 495 DFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKV 554
Query: 329 E 329
E
Sbjct: 555 E 555
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 103/207 (49%), Gaps = 8/207 (3%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V YN ++ + K+ E V +++ Q+G + TY ++++ + G ++ E
Sbjct: 1008 PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 1067
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F++ V PN + Y L++ L + GK ++A+ E ++R + + Y + +C
Sbjct: 1068 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 1127
Query: 174 AGKCEEALMQMDKICKVA---NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PN 229
AGK E+ D C ++ KP VV+Y +I G+ + A +F +MK + PN
Sbjct: 1128 AGKVEDG---WDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 1184
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEM 256
N +++A L G E + +L +EM
Sbjct: 1185 SGCYNTLIRARLRDGDREASAELIKEM 1211
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 141/312 (45%), Gaps = 49/312 (15%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC--------- 105
P IV +N +L+A V+ K+++ + ++++ G + T+ +V+ C
Sbjct: 186 PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 245
Query: 106 -GKY-------------NLVYEFFRK-------------VQKSYIPNALAYKVLVNTLWR 138
GK +LV F R+ V+ Y P+ +AY ++++L +
Sbjct: 246 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 305
Query: 139 EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
+ ++A +++ER+GI + Y L LC++ + +A + + K P V++
Sbjct: 306 TKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVIT 365
Query: 199 YTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y+ L+ A + +G + A +F +M + P++VT + ++ H +EA ++F M
Sbjct: 366 YSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMV 425
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
KG + D+ ++NT+++ KR +D +++ M GL N +
Sbjct: 426 S-----------KG-CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 473
Query: 318 MILDASRAGKVE 329
+I +AG V+
Sbjct: 474 LIQGFFQAGDVD 485
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/338 (22%), Positives = 145/338 (42%), Gaps = 41/338 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y S+ L G + ++ M +ER ++ PD+ ++A++
Sbjct: 903 PNVVTYSSLISCLCNYGRWSDASRLLSDM------------IER---KINPDVFTFSALI 947
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNLVYEFFRKVQ 119
+A V+ + A + ++ ++ PS TY G M L K ++EF V
Sbjct: 948 DAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQ--MFEFM--VS 1003
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K P+ + Y L+ + + +E + +M +RG+VG+ Y L + L AG C+
Sbjct: 1004 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 1063
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A ++ P +++Y L+ +G ++ A +F + ++ P + T NIM++
Sbjct: 1064 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 1123
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G E+ LF ++ KG V PD+ +NTM+ + ++ +
Sbjct: 1124 GMCKAGKVEDGWDLFCNLS-----------LKG-VKPDVVAYNTMISGFCRKGSKEEADA 1171
Query: 299 VYKRMLHHGLHFNAKRHLRMI----LDASRAGKVELLE 332
++K M G N+ + +I D R EL++
Sbjct: 1172 LFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIK 1209
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
MS PD V Y S+ L I E + D M S G L D+V Y
Sbjct: 392 MSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVS-------KGCL--------ADVVSY 436
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N ++N + K+ E + +++ Q+G + TY +++ G + EFF ++
Sbjct: 437 NTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDF 496
Query: 121 SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
I P+ Y +L+ L G+ ++A+ EDM++R + Y + R +C GK EE
Sbjct: 497 FGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEE 556
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
A + KP +V+YT ++ G + ++ +MK
Sbjct: 557 AWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMK 600
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/298 (18%), Positives = 129/298 (43%), Gaps = 16/298 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P I+ ++ +L+A + +++ + +Q++ G + TY +++ + L
Sbjct: 693 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 752
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y PN + L+N + EAV+ V+ M G + + L L
Sbjct: 753 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 812
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
K EA+ +D++ +P +V+Y ++ G+ A + N+M + P ++
Sbjct: 813 HNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLI 872
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ ++ ++A+ LF+EM + KG + P++ T+++++ R
Sbjct: 873 YNTIIDGLCKYKHMDDALNLFKEM-----------ETKG-IRPNVVTYSSLISCLCNYGR 920
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
W D + M+ ++ + +I + GK+ E ++ + + R P+++
Sbjct: 921 WSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK--RSIDPSIV 976
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/250 (19%), Positives = 104/250 (41%), Gaps = 18/250 (7%)
Query: 107 KYNLVYEFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K N + F + KS P+ + + L++ + + K D +S + ME GI +
Sbjct: 168 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 227
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+ C C + AL + K+ K+ +P V+ L+ + +A + ++M
Sbjct: 228 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 287
Query: 226 C-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
P++V N ++ + + +A F+E+ ++KG + P++ T+ ++
Sbjct: 288 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI-----------ERKG-IRPNVVTYTALV 335
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA--- 341
+ RW D + M+ + N + ++ + GKV + +E + R
Sbjct: 336 NGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSID 395
Query: 342 -DRITPPALI 350
D +T +LI
Sbjct: 396 PDIVTYSSLI 405
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 79/215 (36%), Gaps = 56/215 (26%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTL----- 46
+PD V Y ++ + ++E +V M L + F+ G
Sbjct: 1007 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 1066
Query: 47 ---ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
E + P+I+ YN +L+ + + E A V + L++ +P+ TY +++E M
Sbjct: 1067 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 1126
Query: 104 ACGK----------------------YN-LVYEFFRKVQK-------------SYIPNAL 127
GK YN ++ F RK K +PN+
Sbjct: 1127 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 1186
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
Y L+ R+G + + +++M G G A+
Sbjct: 1187 CYNTLIRARLRDGDREASAELIKEMRSCGFAGDAS 1221
>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
Length = 831
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 133/298 (44%), Gaps = 24/298 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++ YNA LN +R+ + A V +++ G P TY ++ K++ +E
Sbjct: 515 PNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHEL 574
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F + + PNA+ Y L++ L +E K DEA M RG Y L C+
Sbjct: 575 FETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCN 634
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
GK E+A+ D++ + P VV+Y L++ +G A +F M C P+ V+
Sbjct: 635 VGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVS 694
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
NIM+ + ++A+++F+ M +D PD+ T+N+++ E+R
Sbjct: 695 HNIMIDGLSKAKRLDDAVEVFERMEQDHG-----------CSPDLVTYNSLIFGLCGEQR 743
Query: 293 WDDLELVYKRMLHHGLHFNAKRH-LRMILDASRAGKVELLEITWEHLARADRITPPAL 349
+ V+K + L + H ++L+A + G V EI ++ PPA
Sbjct: 744 LSEAMKVFKEI--DRLKLSPDPHAFNVLLEAIKCGIVYQFEIRFK--------DPPAF 791
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 118/287 (41%), Gaps = 51/287 (17%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQL-KQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK- 117
YN++LN+ + K+ AF + + ++ P +Y ++++ + + +++
Sbjct: 449 YNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQM 508
Query: 118 VQKSYIPNALAYKVLVNTLWREG-----------------------------------KT 142
+ + +PN Y +N L R+G K
Sbjct: 509 IDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKH 568
Query: 143 DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGL 202
D+A E M RG +A Y L LC K +EA K+ + P V+YT L
Sbjct: 569 DQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTL 628
Query: 203 IQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSN 261
+ + G I+ A +F++M P++V N ++K + G EA +LFQ M
Sbjct: 629 LYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVM----- 683
Query: 262 HINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH-HG 307
++R+ PD + N M+D + KR DD V++RM HG
Sbjct: 684 -VSRQCK------PDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHG 723
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/305 (19%), Positives = 127/305 (41%), Gaps = 19/305 (6%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKP-SATTYGLVMEVMLACGKYNLVY 112
+PD +Y+ ++ A + + + AF + ++ + + P + + + + GK +
Sbjct: 266 KPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAF 325
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
E R +Q+S + Y +L+ L G+ D+A A ++ R I S+ + + + LC
Sbjct: 326 EACRTMQESLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELC 385
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN---FCSPN 229
AG+ + AL ++ + K P + +++ LI + IQ A M S +
Sbjct: 386 KAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSS 445
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+ N ++ + + +A +F M + + +PD+ +++ ++D
Sbjct: 446 CFSYNSLLNSLCKAKKVHQAFAIFSTMVSERS-----------FVPDVVSYSILIDGFCK 494
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA----DRIT 345
E +YK+M+ N + + R G++ + +E + A D IT
Sbjct: 495 IDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVIT 554
Query: 346 PPALI 350
LI
Sbjct: 555 YSTLI 559
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 92/220 (41%), Gaps = 39/220 (17%)
Query: 45 TLERW--DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
T RW + D+ YN +L+ +R + LKQ GQ V E M
Sbjct: 115 TFFRWLQARNFKHDVFTYNCLLDKLIRHRD----------LKQAGQ---------VFEKM 155
Query: 103 LACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+A G +PN Y VLV + E +DEAV +M +G S+
Sbjct: 156 VAQG---------------VVPNGFTYAVLVQSSCYERNSDEAVRFFGEMVDKGFKPSST 200
Query: 163 LYYDLARCLCSAGKCEE--ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
LY + CL + GK E + D +VA + +++ L+ + I+ +
Sbjct: 201 LYQKVTECLKATGKEGEFSRVFGRDLEKRVAVE-MMLKKALLVNFVIQDKAIEASKLFRA 259
Query: 221 QMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
+K+ C P+ + MV A+ + +EA KLF EMA +S
Sbjct: 260 MVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVES 299
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 2/154 (1%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD V Y +L + E A V ++ +G P Y +++ GK +
Sbjct: 619 DPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQ 678
Query: 114 FFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER-RGIVGSAALYYDLARCL 171
F+ V + P+ +++ ++++ L + + D+AV E ME+ G Y L L
Sbjct: 679 LFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGL 738
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
C + EA+ +I ++ P ++ L++A
Sbjct: 739 CGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEA 772
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 54/277 (19%), Positives = 108/277 (38%), Gaps = 14/277 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ Y ++ + + + A ++ +G KPS+T Y V E + A GK
Sbjct: 162 PNGFTYAVLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRV 221
Query: 115 F-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F R ++K + K L+ + K EA M + G A +Y + C
Sbjct: 222 FGRDLEKRVAVEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCK 281
Query: 174 AGKCEEALMQMDKICKVANKPL-VVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVT 232
+EA ++ + PL V++T + SG I+ A M+ S +
Sbjct: 282 LENLDEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQPV 341
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+++++ +E G ++A + E+A + + P T ++++ R
Sbjct: 342 YDMLIRLLIESGRIDKAEEACLEIAGRN------------IQPSSGTCHSVIQELCKAGR 389
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
D + + M+ G + H +I + +A K++
Sbjct: 390 VDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQ 426
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 66/152 (43%), Gaps = 17/152 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ G I++ +V D M S +PD+V YN +L
Sbjct: 620 PDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGH---------------DPDVVAYNCLL 664
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-- 122
R + A + Q + + KP ++ ++++ + + + E F ++++ +
Sbjct: 665 KGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGC 724
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
P+ + Y L+ L E + EA+ ++++R
Sbjct: 725 SPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDR 756
>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
Length = 688
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 144/320 (45%), Gaps = 32/320 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD V + ++ L + E D M ++ P++V + +
Sbjct: 146 HPDVVTFTTLLHGLCVEDRVSEALDFFHQM---------------FETTCRPNVVTFTTL 190
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK--S 121
+N R + A +L ++ + G +P+ TYG +++ M G RK+++
Sbjct: 191 MNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSH 250
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
IPN + Y ++++L ++G+ +A + +M+ +GI Y + CS+G+ +A
Sbjct: 251 IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAE 310
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
+ ++ + P VV+Y LI A + G AA ++++M PN +T N M+ +
Sbjct: 311 QLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGF 370
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD-LELV 299
+ + A +F MA KG PD++TF T++D KR DD +EL+
Sbjct: 371 CKQDRLDAAEDMFYLMA-----------TKGCS-PDVFTFTTLIDGYCGAKRIDDGMELL 418
Query: 300 YKRMLHHGLHFNAKRHLRMI 319
++ M GL N + +I
Sbjct: 419 HE-MPRRGLVANTVTYNTLI 437
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/339 (21%), Positives = 144/339 (42%), Gaps = 40/339 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD Y S+ V +G + ++ M LER ++ PD+V YNA+
Sbjct: 287 FPDLFTYNSMIVGFCSSGRWSDAEQLLQEM------------LER---KISPDVVTYNAL 331
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE-FFRKVQKSY 122
+NA V+ ++ A + ++ +G P+ TY +++ + + + F+ K
Sbjct: 332 INAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGC 391
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ + L++ + D+ + + +M RRG+V + Y L C G AL
Sbjct: 392 SPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALD 451
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK------------NFCSPNL 230
++ P +V+ L+ D+G +++A +F M+ N P++
Sbjct: 452 LSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDV 511
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T NI++ + G F EA +L++EM ++PD T+++M+D +
Sbjct: 512 LTYNILICGLINEGKFLEAEELYEEMPHRG------------IVPDTITYSSMIDGLCKQ 559
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
R D+ ++ M N +I +AG+V+
Sbjct: 560 SRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVD 598
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 109/257 (42%), Gaps = 29/257 (11%)
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P+ + + L+ + R + D +S + MER+ I + L +C CS K AL
Sbjct: 76 LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALS 135
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
KI K+ P VV++T L+ + A F+QM + C PN+VT ++
Sbjct: 136 TFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLC 195
Query: 242 EHGLFEEAMKLFQEMAED------------------------SNHINREYDKKGLVIPDI 277
G EA+ L M ED + ++ R+ ++ +IP++
Sbjct: 196 REGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNV 255
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEI 333
++ ++D+ + R D + ++ M G+ + + MI+ +G+ +LL+
Sbjct: 256 VIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQE 315
Query: 334 TWEHLARADRITPPALI 350
E D +T ALI
Sbjct: 316 MLERKISPDVVTYNALI 332
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 98/249 (39%), Gaps = 27/249 (10%)
Query: 51 PR--LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY 108
PR L + V YN +++ A + QQ+ G P T +++ + GK
Sbjct: 422 PRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKL 481
Query: 109 NLVYEFFRKVQKSYI------------PNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
E F+ +QKS + P+ L Y +L+ L EGK EA E+M RG
Sbjct: 482 KDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRG 541
Query: 157 IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
IV Y + LC + +EA + + P VV++ LI +G + +
Sbjct: 542 IVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGL 601
Query: 217 YIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
+F +M + + + ++ + + G A+ +FQEM V P
Sbjct: 602 ELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSG------------VYP 649
Query: 276 DIYTFNTML 284
D T ML
Sbjct: 650 DTITIRNML 658
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/150 (19%), Positives = 66/150 (44%), Gaps = 16/150 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT+ Y S+ L + + E + SM S K F P++V +N ++
Sbjct: 544 PDTITYSSMIDGLCKQSRLDEATQMFVSMGS---KSFS------------PNVVTFNTLI 588
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + + + + ++ ++G A Y ++ G N + F+++ S +
Sbjct: 589 NGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVY 648
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDME 153
P+ + + ++ W + + + AV+ +ED++
Sbjct: 649 PDTITIRNMLTGFWSKEELERAVAMLEDLQ 678
>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
Length = 455
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/329 (23%), Positives = 143/329 (43%), Gaps = 36/329 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR---SLPKKKFKTGTL-------ERWDP--- 51
P+ V Y ++ G ++ D++ MR + ++ GT+ R D
Sbjct: 70 PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVK 129
Query: 52 ---------RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
++P+ V+YNA++ + + + A ++ ++G + TY L++ +
Sbjct: 130 VFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 189
Query: 103 LACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
G+ YE ++ K P+ Y +L+N +EG +A+ E+M RRG+ +
Sbjct: 190 FMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATV 249
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L L G+ +E D+ + +P +V Y LI + SGNI A I +
Sbjct: 250 VTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE 309
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
M K +P+ VT N +++ G +EA KL EM K+G + PD+ T+
Sbjct: 310 MEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMT-----------KRG-IQPDLVTY 357
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLH 309
NT++ + + D + M++ G +
Sbjct: 358 NTLISGYSMKGDVKDALRIRNEMMNKGFN 386
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 116/240 (48%), Gaps = 14/240 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD+ YN ++N + + A + + + ++G + + TY ++ + G+
Sbjct: 210 LAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETD 269
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F + V++ P+ + Y L+N+ G D A + +ME++ I Y L R L
Sbjct: 270 KLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGL 329
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
C G+ +EA +D++ K +P +V+Y LI G++++A I N+M N +P L
Sbjct: 330 CLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTL 389
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T N +++ ++G ++A + +EM E+ + PD T+ ++++ E
Sbjct: 390 LTYNALIQGLCKNGQGDDAENMVKEMVENG------------ITPDDSTYISLIEGLTTE 437
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 110/251 (43%), Gaps = 18/251 (7%)
Query: 93 TTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM 152
TT+ +++ + + GK E R++ + PNA+ Y ++ G+ A+ + +M
Sbjct: 42 TTFNIMLRHLCSAGKPARALELLRQMPR---PNAVTYNTVIAGFCSRGRVQAALDIMREM 98
Query: 153 -ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK-ICKVANKPLVVSYTGLIQACLDSG 210
ER GI + Y + C G+ +EA+ D+ + K KP V Y LI D G
Sbjct: 99 RERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQG 158
Query: 211 NIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
+ A ++M + + + T N++V A G EA +L +EM
Sbjct: 159 KLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMG-----------G 207
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
KGL PD++T+N +++ E +++ M G+ + +I S+ G+V+
Sbjct: 208 KGLA-PDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQ 266
Query: 330 LLEITWEHLAR 340
+ ++ R
Sbjct: 267 ETDKLFDEAVR 277
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 126/270 (46%), Gaps = 19/270 (7%)
Query: 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK--SYIPNALAYKVLVNTLWRE 139
+L +Q +P+A TY V+ + G+ + R++++ PN Y +++ +
Sbjct: 62 ELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 121
Query: 140 GKTDEAVSAVEDMERRGIVGSAALYYD-LARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
G+ DEAV ++M +G V A+ Y+ L C GK + AL+ D++ + V +
Sbjct: 122 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 181
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y L+ A G A + +M +P++ T NI++ + + G ++A+++F+ M+
Sbjct: 182 YNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMS 241
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
++G V + T+ +++ A + + + + + ++ + G+ + +
Sbjct: 242 -----------RRG-VRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNA 289
Query: 318 MILDASRAGKVE-LLEITWEHLARADRITP 346
+I S +G ++ EI E + RI P
Sbjct: 290 LINSHSTSGNIDRAFEIMGEMEKK--RIAP 317
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 151/343 (44%), Gaps = 28/343 (8%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P+ V Y ++ +A ++E +++ MR ER P P++V Y
Sbjct: 173 MGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMR------------ERGCP---PNLVTY 217
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQ 119
N +++A + A V++++ + G P+ T+ +++ G + + V
Sbjct: 218 NVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVA 277
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K PN + Y L++ L + K EA +E+M+ RG+ A Y L LC A K EE
Sbjct: 278 KGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEE 337
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A + ++ P VV Y+ +I A SG + A +M K SP++VT N ++
Sbjct: 338 AEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVID 397
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G EA + ++M E G V+PD+ T++T+++ + +
Sbjct: 398 GLCKLGKIAEAQVILEQMQE-----------SGDVLPDVVTYSTVINGLCKSDMLVEAQK 446
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
+ RM G + + + +I + G++E E + + RA
Sbjct: 447 LLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRA 489
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 117/252 (46%), Gaps = 13/252 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+VVY+++++A + + A LQ++++Q + P TY V++ + GK
Sbjct: 352 PDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVI 411
Query: 115 FRKVQKS--YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++Q+S +P+ + Y ++N L + EA ++ M + G Y + LC
Sbjct: 412 LEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLC 471
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLV 231
G+ EEA + + + P VV+YT LI + + A + +M+N C PNLV
Sbjct: 472 KCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLV 531
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N MV G +EA +L Q M D + PD T+ T+++A +
Sbjct: 532 TYNTMVNGLCVSGRIKEAQQLVQRMK----------DGRAECSPDAATYRTIVNALMSSD 581
Query: 292 RWDDLELVYKRM 303
+ E + ++M
Sbjct: 582 LVQEAEQLLEQM 593
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 117/260 (45%), Gaps = 26/260 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y SI ++G + E + MR R PD+V YN V+
Sbjct: 352 PDVVVYSSIIHAFCKSGKLLEAQKTLQEMRK---------------QRKSPDVVTYNTVI 396
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQK-PSATTYGLVMEVMLACGKYNLVYE----FFRKVQ 119
+ + + A +L+Q+++ G P TY V+ + K +++ E R +
Sbjct: 397 DGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLC---KSDMLVEAQKLLDRMCK 453
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
P+ + Y +++ L + G+ +EA ++ M+R G + Y L LC A K +E
Sbjct: 454 AGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDE 513
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF---CSPNLVTCNIM 236
A M+++ P +V+Y ++ SG I+ A + +MK+ CSP+ T +
Sbjct: 514 AERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTI 573
Query: 237 VKAYLEHGLFEEAMKLFQEM 256
V A + L +EA +L ++M
Sbjct: 574 VNALMSSDLVQEAEQLLEQM 593
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 131/312 (41%), Gaps = 18/312 (5%)
Query: 38 KKKFKTGTLERWD--PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY 95
KK + G L R + EPD+ YN V++ A +L+++K G P A T+
Sbjct: 91 KKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTH 150
Query: 96 GLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERR 155
++ M G + + R + PN + Y L+ R K +EA+ +E+M R
Sbjct: 151 TPIITAMANAGDLDGAMDHLRSM--GCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRER 208
Query: 156 GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA 215
G + Y L LC A + K+ + P V+++ L+ GN+ +A
Sbjct: 209 GCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDA 268
Query: 216 AYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI 274
+ M PN+VT + ++ + F EA ++ +EM K V
Sbjct: 269 RKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEM------------KTRGVT 316
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEIT 334
PD +T++ ++ + ++ E + +RM G + + +I ++GK+ + T
Sbjct: 317 PDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKT 376
Query: 335 WEHLARADRITP 346
+ + R R +P
Sbjct: 377 LQEM-RKQRKSP 387
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 30/152 (19%), Positives = 67/152 (44%), Gaps = 18/152 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y +I L + G ++E ++ M+ + G P++V Y ++
Sbjct: 458 PDVVTYTTIIDGLCKCGRLEEAEYLLQGMK-------RAGC--------APNVVTYTTLI 502
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + ++ + A V+++++ G P+ TY ++ + G+ + ++++
Sbjct: 503 SGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAE 562
Query: 124 --PNALAYKVLVNTLWREGKTDEAVSAVEDME 153
P+A Y+ +VN L EA +E M+
Sbjct: 563 CSPDAATYRTIVNALMSSDLVQEAEQLLEQMK 594
>gi|125555457|gb|EAZ01063.1| hypothetical protein OsI_23091 [Oryza sativa Indica Group]
Length = 552
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 147/331 (44%), Gaps = 38/331 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVV----Y 60
PD Y ++ L AG + + ++ M + D VV +
Sbjct: 117 PDKFTYSTVVSALADAGRVDDAVALVHEMVA--------------------DGVVAAEAF 156
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N VL A +R +GA + + ++ +G P+A TY +++ +L CG+ R++++
Sbjct: 157 NPVLRAMLRAGDVKGAAKLFEFMQLKGCVPTAATYNVLVHGLLVCGRAGAAMGVMRRMER 216
Query: 121 -SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+P + Y +V+ L R G+ +A E+MER G+ + +Y + C +G+ +
Sbjct: 217 EGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMERNGLARNEFVYSTVITGFCKSGEIDC 276
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
AL + + +P VV Y+ +I + G + A +F +M + C+PN++T M++
Sbjct: 277 ALKVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIDSKCAPNIITYGSMIQ 336
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
Y + G A+ +++EM +P+ +++ +++ R D +
Sbjct: 337 GYFKIGDTSRALSVWEEMIGAG------------CMPNAVSYSILINGLCNVGRLKDAMM 384
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
V+K ML G + + MI +G V+
Sbjct: 385 VWKHMLDRGCAPDTIAYTSMIKGLCVSGMVD 415
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 121/274 (44%), Gaps = 26/274 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR--SLPKKKF----------KTG----TLER 48
P + Y ++ L + G +K+ + V + M L + +F K+G L+
Sbjct: 221 PGVMTYGAVVDGLVRCGRVKDAWKVAEEMERNGLARNEFVYSTVITGFCKSGEIDCALKV 280
Query: 49 WDPRL----EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
W+ + P++V+Y+A++ + A + +++ P+ TYG +++
Sbjct: 281 WEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIDSKCAPNIITYGSMIQGYFK 340
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + + + + +PNA++Y +L+N L G+ +A+ + M RG
Sbjct: 341 IGDTSRALSVWEEMIGAGCMPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIA 400
Query: 164 YYDLARCLCSAGKCEEAL-MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y + + LC +G + L + D + P V+SY L+ L + ++ A + N+M
Sbjct: 401 YTSMIKGLCVSGMVDGGLRLFYDMLASGHADPDVISYNVLLDGLLLAKDLPRAMDLLNRM 460
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
C P+ VTCNI ++ E G E + F E
Sbjct: 461 LDQGCDPDTVTCNIFLR---EFGAGERKGREFLE 491
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 91/238 (38%), Gaps = 50/238 (21%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y +V+ L G+ D+AV+ V +M G+V + A
Sbjct: 117 PDKFTYSTVVSALADAGRVDDAVALVHEMVADGVVAAEA--------------------- 155
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ +++A L +G+++ AA +F M+ C P T N++V L
Sbjct: 156 ---------------FNPVLRAMLRAGDVKGAAKLFEFMQLKGCVPTAATYNVLVHGLLV 200
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G AM + + M + V+P + T+ ++D R D V +
Sbjct: 201 CGRAGAAMGVMRRMEREG------------VVPGVMTYGAVVDGLVRCGRVKDAWKVAEE 248
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLEN 360
M +GL N + +I ++G+++ WE + A + P ++ L N
Sbjct: 249 MERNGLARNEFVYSTVITGFCKSGEIDCALKVWEAMV-ASPVRPNVVLYSAMIGGLAN 305
>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
nagariensis]
gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
nagariensis]
Length = 961
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 156/327 (47%), Gaps = 25/327 (7%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSL-PKKKFKTGTLERWDPRLEPDIVVYNA 62
Y D+ A ++ L + G++K ++ D +R+L P + + D+ Y
Sbjct: 232 YLDSSAMAALLKELAKQGYLKRAVEIFDWLRNLEPSHELSSLC----------DLYTYTT 281
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKS 121
+++ C +Q A ++ +++ +G + TY +M V + + +L + +++ +++
Sbjct: 282 MISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEG 341
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
PN + Y +L++ + + +EAV ++ +E++ I Y + +G+ E+AL
Sbjct: 342 CSPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQAL 401
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
+K+ KP +YT LI A G ++ A IF M + C N++T + ++ A
Sbjct: 402 KVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISAC 461
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ G +E A++LF +M +++ P++ TFN+++ AC+ W+ ++
Sbjct: 462 EKAGRWEMALELFSKMHKENCK------------PNVVTFNSLIAACSHGGHWEKASELF 509
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGK 327
++M G ++ + +I R G+
Sbjct: 510 EQMQTQGCKPDSITYCGLITAYERGGQ 536
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 114/233 (48%), Gaps = 14/233 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V YN +++ V+R QWE A VL L++Q + TY V+ G+ +
Sbjct: 344 PNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKV 403
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ K+ + + P+A Y L++ ++G+ ++A+ DM RRG + Y L
Sbjct: 404 YEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEK 463
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVT 232
AG+ E AL K+ K KP VV++ LI AC G+ + A+ +F QM+ C P+ +T
Sbjct: 464 AGRWEMALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSIT 523
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
++ AY G + A+K F++M H PD FN++++
Sbjct: 524 YCGLITAYERGGQWRRALKAFEQMQTQGCH------------PDAAVFNSLME 564
>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
Length = 855
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 126/263 (47%), Gaps = 23/263 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
PD + Y S+ L G + E V DSM ++ + K G +E
Sbjct: 571 PDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEI 630
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
LE PD YN++++ V+ ++ + AF V ++ G KP+A T+ ++M +
Sbjct: 631 LELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFK 690
Query: 105 CGKYNLVYEFFRK-VQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
GK + + F++ ++K +P L +Y +L++ L + G+ EA S ++M RGI+
Sbjct: 691 DGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECH 750
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ- 221
Y L L AG+ EA ++ + K+ P V +Y+ LI +DS + A +F +
Sbjct: 751 TYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEM 810
Query: 222 MKNFCSPNLVTCNIMVKAYLEHG 244
MK C+PN VT ++ + + G
Sbjct: 811 MKRGCAPNEVTYKVLRRGFRAAG 833
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/348 (21%), Positives = 143/348 (41%), Gaps = 30/348 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ VAY ++ L +AG I++ + M P Y V+
Sbjct: 396 PNVVAYTAVIDGLLKAGRIEDGLKNFEDMSG---------------SSCVPTRTTYTVVI 440
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKSYI 123
+ + + A V +Q+ Q+G P TY +++ K + + + K
Sbjct: 441 DGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPE 500
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P A+ Y +V+ + +EA + M RG ++ L S G+ EEA
Sbjct: 501 PTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQV 560
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ ++ P V+ YT LI +G + A ++F+ M + C+P+ +T +++ + +
Sbjct: 561 LTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSK 620
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G E A ++ + MA K V PD + +N+++D +R D VY R
Sbjct: 621 IGNVEAAGEILELMA------------KSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDR 668
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
M+ G+ NA ++ + GK + ++ + D + PP L+
Sbjct: 669 MVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEV-PPTLV 715
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 135/301 (44%), Gaps = 27/301 (8%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R PD+ +Y +V++ + + F +L+++ G P A Y ++++ + G+ +
Sbjct: 119 RFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEA 178
Query: 112 YEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
YE F +++KS + + + + L+ L GK DEA +M RG + L
Sbjct: 179 YELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFA 238
Query: 171 LCSAGKCEEA--LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM---KNF 225
LC AGK +EA + Q KVA V+Y L+ G + + + QM NF
Sbjct: 239 LCKAGKVDEANEIYQTVVAKKVATSR--VAYNSLMDGYCKLGRVDDGLKLLLQMVECDNF 296
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM---------AEDSNHINREYDKKGLVIP- 275
P++ T NI+V + ++A++LF+ + A + I YD + +
Sbjct: 297 --PDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAK 354
Query: 276 -------DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
D+ ++ T++ A KR D+ +++++ G N + +I +AG++
Sbjct: 355 AFFDEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRI 414
Query: 329 E 329
E
Sbjct: 415 E 415
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 136/318 (42%), Gaps = 30/318 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y SI + I E +VI MR ER EP + ++ ++L
Sbjct: 501 PTAVTYGSIVHGFCKLDMINEAKEVIAQMR------------ERG---CEPGLFIFTSLL 545
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + + E A+ VL ++ +G P Y +++++ + G+ F ++K
Sbjct: 546 SYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCA 605
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+AL Y ++ + G + A +E M + G+ Y L + ++A
Sbjct: 606 PDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGV 665
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
D++ KP V++ L+ G A +F +M K+ P LV+ I++
Sbjct: 666 YDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLG 725
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G EA FQEM I+R +IP+ +T+ +++ + A R + + + +
Sbjct: 726 KAGRVSEAFSQFQEM------IDRG------IIPECHTYTSLIYSLAKAGRIPEAKKLVE 773
Query: 302 RMLHHGLHFNAKRHLRMI 319
M+ G++ + + + +I
Sbjct: 774 DMVKLGVNPDVQAYSALI 791
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 123/300 (41%), Gaps = 24/300 (8%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP IV YN V++ + + A+ + G +P + ++ G+ + +
Sbjct: 52 EPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHM 111
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ K + P+ Y +++ + G D +E+M G + AA Y+ L LC
Sbjct: 112 LLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCK 171
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+ +EA +++ K V++ LI+A + G + A ++ +M + P L
Sbjct: 172 LGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEV 231
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKGLV----------- 273
+ ++ A + G +EA +++Q + N + Y K G V
Sbjct: 232 QDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMV 291
Query: 274 ----IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
PDI T+N ++ + R DD ++K + +G NA + +I A ++E
Sbjct: 292 ECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRME 351
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 75/347 (21%), Positives = 145/347 (41%), Gaps = 40/347 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTL------ 46
PD AY + L + G + E +++ + MR +L + G L
Sbjct: 157 PDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACEL 216
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E + EP + V ++++ A + + + A + Q + + S Y +M+
Sbjct: 217 YREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCK 276
Query: 105 CGKYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ + + + V+ P+ Y +LV R + D+A+ + + G +AA
Sbjct: 277 LGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAAT 336
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + + L A + EEA D+ V +SYT +I+ DS I A +F ++K
Sbjct: 337 YTTIIQGLYDAQRMEEAKAFFDEALDV------ISYTTVIKGLADSKRIDEACELFEKLK 390
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
CSPN+V ++ L+ G E+ +K F++M+ S +P T+
Sbjct: 391 TAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSS------------CVPTRTTYTV 438
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++D + D V+++M+ G + + +I S+A K++
Sbjct: 439 VIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMD 485
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 87/203 (42%), Gaps = 6/203 (2%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDI YN ++ R + + A + + L G KP+A TY +++ + + F
Sbjct: 297 PDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAF 356
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
F + + ++Y ++ L + DEA E ++ G + Y + L A
Sbjct: 357 FDEAL-----DVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKA 411
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTC 233
G+ E+ L + + + P +YT +I + + +A +F QM + C P+ +T
Sbjct: 412 GRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITY 471
Query: 234 NIMVKAYLEHGLFEEAMKLFQEM 256
++ + + +EA KL M
Sbjct: 472 TTLIDGFSKASKMDEARKLLDVM 494
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/230 (19%), Positives = 92/230 (40%), Gaps = 23/230 (10%)
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P+ + +++N L + K D+A+ +M G + Y + L S K +EA
Sbjct: 17 MPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYK 76
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLE 242
+ + +P V+++T LI +G Q + NQ P++ ++ Y +
Sbjct: 77 FFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFRPDVFLYTSVIHGYCK 136
Query: 243 HGLFEEAMKLFQEMAEDS------------------NHINREYD-----KKGLVIPDIYT 279
G + K+ +EM ++ Y+ +K + D T
Sbjct: 137 AGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVT 196
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
F T+++A + + D+ +Y+ M+ G + +I +AGKV+
Sbjct: 197 FMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVD 246
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 89/223 (39%), Gaps = 24/223 (10%)
Query: 143 DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGL 202
+EA+ +++M G++ + LC A K ++A+ ++ + +P +VSY +
Sbjct: 2 EEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTV 61
Query: 203 IQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY-------LEHGLFEEAMKLFQ 254
I + A FN M N C P+++ ++ + + H L +A+K F+
Sbjct: 62 ISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFR 121
Query: 255 EMAEDSNHINREYDKKGLV---------------IPDIYTFNTMLDACAAEKRWDDLELV 299
+ Y K G + IPD + ++D R D+ +
Sbjct: 122 PDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYEL 181
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARA 341
++RM G + + +I S GK+ E E+ E + R
Sbjct: 182 FERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERG 224
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 22/194 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLER---- 48
PD AY S+ + + + F V D M + L FK G +R
Sbjct: 641 PDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSL 700
Query: 49 WDPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
+ LE P +V Y +++ + + AF Q++ +G P TY ++ +
Sbjct: 701 FKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLA 760
Query: 104 ACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G+ + + K + P+ AY L+ L D A ++M +RG +
Sbjct: 761 KAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEV 820
Query: 163 LYYDLARCLCSAGK 176
Y L R +AG+
Sbjct: 821 TYKVLRRGFRAAGR 834
>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
Length = 784
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 144/340 (42%), Gaps = 30/340 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD AY ++ +AG ++ V M D ++P IV YN VL
Sbjct: 170 PDAGAYTALVSAFSRAGRFRDAVAVFRRM---------------VDSGVQPAIVTYNVVL 214
Query: 65 NACVRRK-QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-Y 122
+ + W+ ++ +K+ G P TY ++ Y + F +++ S +
Sbjct: 215 HVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGF 274
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ + + L++ + + DEA+ +++MER G S Y L G E+A+
Sbjct: 275 EPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVA 334
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
++ KP VV+YT LI +G I A +++M +N C PNL T N ++K +
Sbjct: 335 LKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHG 394
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G F E M +F E+ + +PDI T+NT+L ++ V+K
Sbjct: 395 VRGKFPEMMAVFDEL------------RSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFK 442
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
M G ++ +I SR G +L ++ + A
Sbjct: 443 EMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEA 482
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/377 (21%), Positives = 147/377 (38%), Gaps = 75/377 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKKFKTGTLERW------------ 49
PD V + ++ GQ G E+ V M+ +P++ + +
Sbjct: 416 PDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQI 475
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG-------- 96
+ + PD+ YNAVL+A R +WE A + +++++ KP +Y
Sbjct: 476 YKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYAN 535
Query: 97 ------------------------LVMEVMLACGKYNLVYE----FFRKVQKSYIPNALA 128
LV ++L K N + E F QK +
Sbjct: 536 AKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINV 595
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
+V+ + + + M+ I SAA Y L G CE+ + +I
Sbjct: 596 LNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIK 655
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS---PNLVTCNIMVKAYLEHGL 245
+P SY +I A G ++ A+ +F++MK CS P++VT NI VK+Y+ + +
Sbjct: 656 SSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMK--CSGLKPDVVTYNIFVKSYVSNSM 713
Query: 246 FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM-- 303
FEEA++L + M P+ T+N++++ + D ++ +
Sbjct: 714 FEEAIELVRYMVTQGCK------------PNERTYNSIVEGYCRNGKLTDAKIFVSNLPQ 761
Query: 304 LHHGLHFNAKRHLRMIL 320
LH G +++L +L
Sbjct: 762 LHPGYSKQEQQNLFEVL 778
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 22/185 (11%)
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
R + AG+ EA +D A P +YT L+ A +G ++A +F +M +
Sbjct: 149 RVMARAGRLAEASALLD----AAPGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQ 204
Query: 228 PNLVTCNIMVKAYLEHGL-FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
P +VT N+++ Y + + ++E ++L M E V PD YT+NT++
Sbjct: 205 PAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHG------------VAPDRYTYNTLISC 252
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRIT- 345
C + + V+ M G + K +LD GK + E + +R+
Sbjct: 253 CRRRALYKEAAQVFDEMKASGFEPD-KVTFNSLLDVY--GKARRHDEAIEVIQEMERVGC 309
Query: 346 PPALI 350
PP+++
Sbjct: 310 PPSVV 314
>gi|224144580|ref|XP_002325338.1| predicted protein [Populus trichocarpa]
gi|222862213|gb|EEE99719.1| predicted protein [Populus trichocarpa]
Length = 481
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 95/410 (23%), Positives = 166/410 (40%), Gaps = 72/410 (17%)
Query: 18 GQAGHIKELFDVIDSMRSLPKKKFKT---------GTLERWDPRLE--------PDIVVY 60
G +L D++ + +P T G +ER L+ PD++ Y
Sbjct: 36 GSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERASRVLKTMVMSGLVPDVITY 95
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQ 119
N ++ +R+Q A +L+ + G P TY ++ + GK++ EF+R +++
Sbjct: 96 NMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGKFDQAVEFWRGQLR 155
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDME-------------------------- 153
+ +P + Y +L+ +W+ T A+ +EDM
Sbjct: 156 RGCLPYLIPYTILIELVWKHCGTVRALEVLEDMAIEGCYPDLVTYNSLVNFASKEGKYED 215
Query: 154 ---------RRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204
G+ +A Y L LCS G +E + + K ++ P VV+Y LI
Sbjct: 216 AALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILIN 275
Query: 205 ACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
G ++ A F QM CSP+++T N ++ A + G+ +EA+++F + DSN
Sbjct: 276 GLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVFV-LLSDSN-- 332
Query: 264 NREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDAS 323
P + T+NT++D D+ +Y +M+ G+ + H ++
Sbjct: 333 ---------CSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVWGFC 383
Query: 324 RAGKVE-LLEITWEHLARADRITPPA--LIKERFCNRLENKDYGSAISCL 370
+VE +EI E R RI A L+ C NK AI L
Sbjct: 384 WIDQVEDAVEILREMGKRDHRINSSAYRLVINGLC---RNKRVDIAIQVL 430
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/264 (17%), Positives = 107/264 (40%), Gaps = 49/264 (18%)
Query: 51 PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
P +E D N +L+ ++ A ++ + + Q P++T ++ ++ G+
Sbjct: 16 PLVENDEETNNEILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIER 75
Query: 111 VYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
+ V +P+ + Y ++V + + A+ +EDM G
Sbjct: 76 ASRVLKTMVMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGC------------ 123
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQMKNFCSP 228
P V++Y +I++ D+G A + Q++ C P
Sbjct: 124 -----------------------PPDVITYNTIIRSLFDNGKFDQAVEFWRGQLRRGCLP 160
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
L+ I+++ +H A+++ ++MA + + PD+ T+N++++ +
Sbjct: 161 YLIPYTILIELVWKHCGTVRALEVLEDMAIEGCY------------PDLVTYNSLVNFAS 208
Query: 289 AEKRWDDLELVYKRMLHHGLHFNA 312
E +++D L+ +L HG+ NA
Sbjct: 209 KEGKYEDAALIIYNILSHGMEPNA 232
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 98/236 (41%), Gaps = 29/236 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKK----------------FKTGTLER 48
P+ + Y S+ +L G L+D +D + ++ KK K G +ER
Sbjct: 230 PNAITYNSLLHSLCSCG----LWDEVDEILAIMKKTSHPPTVVTYNILINGLCKCGLVER 285
Query: 49 --------WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
PDI+ YN +L A + + A V L P TY V++
Sbjct: 286 AINFFVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDSNCSPGLITYNTVID 345
Query: 101 VMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+ G + + + + ++K P+ + ++ LV + ++AV + +M +R
Sbjct: 346 GLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVWGFCWIDQVEDAVEILREMGKRDHRI 405
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA 215
+++ Y + LC + + A+ ++ + KP Y+ LI++ D+G ++ A
Sbjct: 406 NSSAYRLVINGLCRNKRVDIAIQVLEMMISGRYKPDEEIYSTLIKSVADAGMVEEA 461
>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
Length = 457
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 143/318 (44%), Gaps = 29/318 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + + K+ ++D MR D PDIV YN V+
Sbjct: 65 PDVVTYTILLEATCKRSGYKQAMKLLDEMR---------------DKGCTPDIVTYNVVV 109
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N + + + A L+ L G +P+ +Y +V++ + ++ E ++ QK
Sbjct: 110 NGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCP 169
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + +L++ L R+G + A+ +E + + G ++ Y L C K ++A+
Sbjct: 170 PNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAF 229
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+D + P +VSY L+ A SG + A + +Q+K+ C+P L++ N ++ +
Sbjct: 230 LDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTK 289
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +EA++L EM KGL PDI T++T+ E R +D + +
Sbjct: 290 AGKTKEALELLNEMV-----------SKGLQ-PDIITYSTIAAGLCREDRIEDAIRAFGK 337
Query: 303 MLHHGLHFNAKRHLRMIL 320
+ G+ N + +IL
Sbjct: 338 VQDMGIRPNTVLYNAIIL 355
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 132/292 (45%), Gaps = 15/292 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+EPD YN ++ R + A VL ++ ++ P TY +++E Y
Sbjct: 28 VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAM 87
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +++ K P+ + Y V+VN + +EG+ D+A+ ++++ G + Y + + L
Sbjct: 88 KLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGL 147
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C+A + E+A M ++ + P VV++ LI G ++ A + Q+ + C+PN
Sbjct: 148 CTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNS 207
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
++ N ++ A+ + ++AM M + PDI ++NT+L A
Sbjct: 208 LSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCY------------PDIVSYNTLLTALCRS 255
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARA 341
D + ++ G + +I ++AGK E LE+ E +++
Sbjct: 256 GEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKG 307
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 96/204 (47%), Gaps = 2/204 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ + YN +L+A ++K+ + A L + +G P +Y ++ + G+ ++ E
Sbjct: 205 PNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVEL 264
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++ K P ++Y +++ L + GKT EA+ + +M +G+ Y +A LC
Sbjct: 265 LHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCR 324
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+ E+A+ K+ + +P V Y +I +A +F M N C PN T
Sbjct: 325 EDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNEST 384
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEM 256
I+++ GL +EA L E+
Sbjct: 385 YTILIEGLAYEGLIKEARDLLDEL 408
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 83/195 (42%), Gaps = 16/195 (8%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD V+Y ++ L ++G + +++ ++ D P ++ YN V
Sbjct: 239 YPDIVSYNTLLTALCRSGEVDVAVELLHQLK---------------DKGCAPVLISYNTV 283
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
++ + + + A +L ++ +G +P TY + + + F KVQ I
Sbjct: 284 IDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGI 343
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN + Y ++ L + +T A+ M G + + + Y L L G +EA
Sbjct: 344 RPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARD 403
Query: 183 QMDKICKVANKPLVV 197
+D++C A + +++
Sbjct: 404 LLDELCSRAGEEILL 418
>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
Length = 548
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 144/332 (43%), Gaps = 40/332 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD VAY +I +L + + + FD FK +ER R P++V Y A++
Sbjct: 188 PDIVAYNAIIDSLCKTKRVNDAFDF-----------FKE--IERKGIR--PNVVTYTALV 232
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N +W A +L + ++ P+ TY +++ + GK E F + V+ S
Sbjct: 233 NGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSID 292
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y LVN L + DEA + M +G + Y L C A + E+ +
Sbjct: 293 PDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKL 352
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
++ + V+Y LIQ +G++ A F+QM F SP++ T NI++ +
Sbjct: 353 FREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCD 412
Query: 243 HGLFEEAMKLFQEMAEDSNHIN--------REYDKKGLV---------------IPDIYT 279
+G E+A+ +F++M + ++ R K G V PDI T
Sbjct: 413 NGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVT 472
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
+ TM+ + ++E +Y +M GL N
Sbjct: 473 YTTMMSGLCTKGLLHEVEALYTKMKQEGLMKN 504
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 133/301 (44%), Gaps = 25/301 (8%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPD V +++N RR + A ++ ++ + G KP Y +++ + + N ++
Sbjct: 152 EPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFD 211
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
FF+++++ I PN + Y LVN L + +A + DM ++ I + Y L
Sbjct: 212 FFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFV 271
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
GK EA +++ +++ P +V+Y+ L+ I A +F+ M C ++V
Sbjct: 272 KNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVV 331
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAED---SNHINREYDKKGL---------------- 272
+ N ++ + + E+ MKLF+EM++ SN + +G
Sbjct: 332 SYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM 391
Query: 273 ----VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+ PDI+T+N +L + ++++ M + + + +I + GKV
Sbjct: 392 DFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKV 451
Query: 329 E 329
E
Sbjct: 452 E 452
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 140/312 (44%), Gaps = 49/312 (15%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC--------- 105
P IV +N +L+A V+ K+++ + ++++ G + T+ +V+ C
Sbjct: 83 PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142
Query: 106 -GKY-------------NLVYEFFRK-------------VQKSYIPNALAYKVLVNTLWR 138
GK +LV F R+ V+ Y P+ +AY ++++L +
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 202
Query: 139 EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
+ ++A +++ER+GI + Y L LC++ + +A + + K P V++
Sbjct: 203 TKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVIT 262
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y+ L+ A + +G + A +F +M P++VT + +V H +EA ++F M
Sbjct: 263 YSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMV 322
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
KG + D+ ++NT+++ KR +D +++ M GL N +
Sbjct: 323 S-----------KG-CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 370
Query: 318 MILDASRAGKVE 329
+I +AG V+
Sbjct: 371 LIQGFFQAGDVD 382
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
MS PD V Y S+ L I E + D M S G L D+V Y
Sbjct: 289 MSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVS-------KGCL--------ADVVSY 333
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N ++N + K+ E + +++ Q+G + TY +++ G + EFF ++
Sbjct: 334 NTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDF 393
Query: 121 SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
I P+ Y +L+ L G+ ++A+ EDM++R + Y + R +C GK EE
Sbjct: 394 FGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEE 453
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
A + KP +V+YT ++ G + ++ +MK
Sbjct: 454 AWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMK 497
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/250 (19%), Positives = 104/250 (41%), Gaps = 18/250 (7%)
Query: 107 KYNLVYEFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K N + F + KS P+ + + L++ + + K D +S + ME GI +
Sbjct: 65 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+ C C + AL + K+ K+ +P V+ L+ + +A + ++M
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184
Query: 226 C-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
P++V N ++ + + +A F+E+ ++KG + P++ T+ ++
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI-----------ERKG-IRPNVVTYTALV 232
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA--- 341
+ RW D + M+ + N + ++ + GKV + +E + R
Sbjct: 233 NGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSID 292
Query: 342 -DRITPPALI 350
D +T +L+
Sbjct: 293 PDIVTYSSLV 302
>gi|307105412|gb|EFN53661.1| hypothetical protein CHLNCDRAFT_58444 [Chlorella variabilis]
Length = 1131
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/313 (20%), Positives = 150/313 (47%), Gaps = 14/313 (4%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D + ++++ CV ++ A + ++++ +G + + T+ +M V + CG+Y L + +
Sbjct: 290 DEFTFTSMISNCVAQQDLGRAMALAEEMRDRGIERNVHTFSALMNVCIKCGQYKLALDVY 349
Query: 116 RKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
R +Q + P N + Y L++ + G+ +EA++ +E M+R I + L ++
Sbjct: 350 RDMQAAGCPANVVTYNTLIDVYGKSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTS 409
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTC 233
+ +EAL +++ ++ P +Y LI A G++ +F +M + C +++T
Sbjct: 410 NQWQEALRVYEQMAASSHPPNTTTYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVITY 469
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
+ ++ A + G ++ A++LF+EM + +P++ ++N+++ ACA +W
Sbjct: 470 SSLISACEKAGEWKLALQLFEEMRGEG------------CVPNVISYNSLITACAQGAQW 517
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKER 353
+ V+++M G + + +I R G+ +E + RA P +++
Sbjct: 518 EKAAEVFEQMQRQGCRPDVVSYTALIQAYERGGQWRRALAAFEEMIRARPCAPDSIVYNT 577
Query: 354 FCNRLENKDYGSA 366
+ L G A
Sbjct: 578 IIDVLWETGVGWA 590
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 117/279 (41%), Gaps = 54/279 (19%)
Query: 47 ERWDPRLEPDIVVYNAVLNACV-----------------------------------RRK 71
E D +E ++ ++A++N C+ +
Sbjct: 316 EMRDRGIERNVHTFSALMNVCIKCGQYKLALDVYRDMQAAGCPANVVTYNTLIDVYGKSG 375
Query: 72 QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK----SYIPNAL 127
QWE A VL+Q+K++ +P T+ +M+AC N E R ++ S+ PN
Sbjct: 376 QWEEALAVLEQMKRERIQPVTRTFN---TLMIACNTSNQWQEALRVYEQMAASSHPPNTT 432
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
Y L++ + G + ++ ++M ++G S Y L AG+ + AL +++
Sbjct: 433 TYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYSSLISACEKAGEWKLALQLFEEM 492
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLF 246
P V+SY LI AC + AA +F QM + C P++V+ +++AY G +
Sbjct: 493 RGEGCVPNVISYNSLITACAQGAQWEKAAEVFEQMQRQGCRPDVVSYTALIQAYERGGQW 552
Query: 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
A+ F+EM + PD +NT++D
Sbjct: 553 RRALAAFEEMI-----------RARPCAPDSIVYNTIID 580
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+++ YN+++ AC + QWE A V +Q+++QG +P +Y +++ G++
Sbjct: 499 PNVISYNSLITACAQGAQWEKAAEVFEQMQRQGCRPDVVSYTALIQAYERGGQWRRALAA 558
Query: 115 FRKVQKSY--IPNALAYKVLVNTLWREG 140
F ++ ++ P+++ Y +++ LW G
Sbjct: 559 FEEMIRARPCAPDSIVYNTIIDVLWETG 586
>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g12775, mitochondrial-like [Glycine max]
Length = 750
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 138/316 (43%), Gaps = 31/316 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ GH+KE F +++ M+ + PD+ +N ++
Sbjct: 236 PNVVTYNALVYGFCIMGHLKEAFSLLNEMKL---------------KNINPDVCTFNTLI 280
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEFFRKVQKSYI 123
+A + + + A VL + + KP TY +++ K N Y F+ Q
Sbjct: 281 DALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVT 340
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y +++ L +E DEA+S E+M+ + ++ Y L LC E A+
Sbjct: 341 PNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIAL 400
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
K+ + +P V SYT L+ A G ++NA F ++ K + N+ T N+M+
Sbjct: 401 CKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGY-HLNVQTYNVMINGLC 459
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ LF EAM L +M + KG +PD TF T++ A + D E + +
Sbjct: 460 KADLFGEAMDLKSKM-----------EGKG-CMPDAITFKTIICALFEKDENDKAEKILR 507
Query: 302 RMLHHGLHFNAKRHLR 317
M+ GL K L+
Sbjct: 508 EMIARGLQEARKVRLK 523
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 140/321 (43%), Gaps = 50/321 (15%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDIV Y ++++ + E A + +++K+QG +P +Y ++++ + G+ EF
Sbjct: 376 PDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEF 435
Query: 115 F-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL------ 167
F R + K Y N Y V++N L + EA+ ME +G + A + +
Sbjct: 436 FQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFE 495
Query: 168 ---------------ARCLCSAGKC--EEALMQMDKICKVANKPLVVSYTGLIQACLDSG 210
AR L A K +EA + + + K KP VV+Y L+
Sbjct: 496 KDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVN 555
Query: 211 NIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------- 260
+++A Y+F M +PN+ IM+ + +EAM LF+EM +
Sbjct: 556 ELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYT 615
Query: 261 ---------NHINR------EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
+H+ R E + G + PD+Y++ +LD R + + +++R+L
Sbjct: 616 SLIDALCKNHHLERAIALLKEMKEHG-IQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLV 674
Query: 306 HGLHFNAKRHLRMILDASRAG 326
G H N + + MI + +AG
Sbjct: 675 KGYHLNVQVYTAMINELCKAG 695
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 123/293 (41%), Gaps = 37/293 (12%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML-------ACGKYNL 110
V Y ++N + + + +L++L+ KP Y ++ + AC Y+
Sbjct: 169 VSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYS- 227
Query: 111 VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ K PN + Y LV G EA S + +M+ + I + L
Sbjct: 228 -----EMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDA 282
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
L GK + A + + + K KP VV+Y LI ++NA Y+F M ++ +PN
Sbjct: 283 LGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPN 342
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAE------------------DSNHINREYD--- 268
+ T M+ + + +EAM LF+EM ++H+ R
Sbjct: 343 VRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCK 402
Query: 269 --KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
K+ + PD+Y++ +LDA R ++ + ++R+L G H N + + MI
Sbjct: 403 KMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMI 455
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 110/243 (45%), Gaps = 16/243 (6%)
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEFFRKVQKSYIPNAL 127
R+ + + A VL + + KP TYG +M+ + + Y F+ Q PN
Sbjct: 518 RKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQ 577
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
Y ++++ L ++ DEA+S E+M+ + + + Y L LC E A+ + ++
Sbjct: 578 CYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEM 637
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGL 245
+ +P V SYT L+ SG ++ A IF ++ K + N+ M+ + GL
Sbjct: 638 KEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGY-HLNVQVYTAMINELCKAGL 696
Query: 246 FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
F+EA+ L +M + KG +PD TF+ ++ A + D E + M+
Sbjct: 697 FDEALDLQXKMED-----------KG-CMPDAVTFDIIIWALFEKDENDKAEKILXEMIA 744
Query: 306 HGL 308
GL
Sbjct: 745 RGL 747
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 109/255 (42%), Gaps = 14/255 (5%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R P +N +L++ V K + + ++ + G P T ++M
Sbjct: 58 RPPPPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFA 117
Query: 112 YEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ + ++ Y PNA+ L+ L G+ +A+ + + +G + Y L
Sbjct: 118 FSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLING 177
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
LC G+ + + K+ + KP VV Y +I + + + +A ++++M SPN
Sbjct: 178 LCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPN 237
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+VT N +V + G +EA L EM +IN PD+ TFNT++DA
Sbjct: 238 VVTYNALVYGFCIMGHLKEAFSLLNEM--KLKNIN----------PDVCTFNTLIDALGK 285
Query: 290 EKRWDDLELVYKRML 304
E + ++V M+
Sbjct: 286 EGKMKAAKIVLAVMM 300
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/156 (18%), Positives = 73/156 (46%), Gaps = 16/156 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ V Y S+ L + H++ ++ M+ + ++PD+ Y +
Sbjct: 608 FPNIVTYTSLIDALCKNHHLERAIALLKEMK---------------EHGIQPDVYSYTIL 652
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSY 122
L+ + + EGA + Q+L +G + Y ++ + G ++ + K++ K
Sbjct: 653 LDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGC 712
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+P+A+ + +++ L+ + + D+A + +M RG++
Sbjct: 713 MPDAVTFDIIIWALFEKDENDKAEKILXEMIARGLM 748
>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
Length = 755
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 116/259 (44%), Gaps = 14/259 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V YN V+N R Q E A+ + ++ QG P+ TY V++ + +
Sbjct: 159 PDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGV 218
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F++ + + P+ Y L++ GK E V +E+M G+ Y L LC
Sbjct: 219 FQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCK 278
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+C EA + D + + KP V Y L+ G + + M N SPN
Sbjct: 279 NGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRI 338
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
NIM AY + + EEAM +F +M + +GL PD+ +F ++DA R
Sbjct: 339 FNIMFCAYAKKAMIEEAMHIFNKMRQ-----------QGLS-PDVVSFGALIDALCKLGR 386
Query: 293 WDDLELVYKRMLHHGLHFN 311
DD L + +M++ G+ N
Sbjct: 387 VDDAVLQFNQMINEGVTPN 405
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/326 (21%), Positives = 144/326 (44%), Gaps = 29/326 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD VAY ++ + G +++ +++ LE D + P++V Y V+
Sbjct: 159 PDVVAYNTVINGFFREGQVEKAYNLF---------------LEMMDQGIPPNVVTYTTVI 203
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + + A V QQ+ +G KP TY ++ L+ GK+ V + ++ +
Sbjct: 204 DGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLE 263
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y +L++ L + G+ EA + M R+GI A+Y L + G E
Sbjct: 264 PDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSF 323
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+D + P + + A I+ A +IFN+M+ SP++V+ ++ A +
Sbjct: 324 LDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCK 383
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G ++A+ F +M + V P+I+ F++++ +W+ E ++
Sbjct: 384 LGRVDDAVLQFNQMINEG------------VTPNIFVFSSLVYGLCTVGKWEKAEELFFE 431
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV 328
+L G+ +A ++ + G+V
Sbjct: 432 VLDQGICVDAVFFNTLMCNLCNEGRV 457
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 120/255 (47%), Gaps = 14/255 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN-LV 111
+ P+ ++N + A ++ E A + +++QQG P ++G +++ + G+ + V
Sbjct: 332 VSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAV 391
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+F + + + PN + LV L GK ++A ++ +GI A + L L
Sbjct: 392 LQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNL 451
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C+ G+ EA +D + +V +P V+SY L+ +G I AA + + M N PN
Sbjct: 452 CNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNE 511
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T I+++ Y + ++A LF+EM KG V P + T+NT+L
Sbjct: 512 FTYTILLRGYCKARRVDDAYSLFREML-----------MKG-VTPVVATYNTILHGLFQT 559
Query: 291 KRWDDLELVYKRMLH 305
R+ + +Y M++
Sbjct: 560 GRFSEANELYLNMIN 574
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 86/196 (43%), Gaps = 14/196 (7%)
Query: 116 RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
R+ PNA Y +L+ R G+ + +A + + G + + L + LC A
Sbjct: 80 RECSSKVAPNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAK 139
Query: 176 KCEEAL-MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTC 233
+ +EA + + ++ + P VV+Y +I G ++ A +F +M + PN+VT
Sbjct: 140 RVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTY 199
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
++ + + + A +FQ+M + V PD T+N ++ + +W
Sbjct: 200 TTVIDGLCKAQVVDRAKGVFQQMIDRG------------VKPDNGTYNCLIHGYLSTGKW 247
Query: 294 DDLELVYKRMLHHGLH 309
++ + + M HGL
Sbjct: 248 KEVVQMLEEMSTHGLE 263
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 74/352 (21%), Positives = 124/352 (35%), Gaps = 90/352 (25%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD+V + A+++A + + + A Q+ +G P+ + ++ + GK+
Sbjct: 367 LSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAE 426
Query: 113 EFFRKVQKSYI------------------------------------PNALAYKVLVNTL 136
E F +V I PN ++Y LV
Sbjct: 427 ELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGH 486
Query: 137 WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV 196
G+ DEA ++ M G+ + Y L R C A + ++A ++ P+V
Sbjct: 487 CLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVV 546
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQMKN-------------------------------- 224
+Y ++ +G A ++ M N
Sbjct: 547 ATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRR 606
Query: 225 FCS--PNL--VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
CS P L VT NIM+ A L+ G E+AM LF ++ GLV PD+ T+
Sbjct: 607 LCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFATIS-----------AYGLV-PDVVTY 654
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK------RHLRMILDASRAG 326
+ + E + + ++ M G N+ R L D SRAG
Sbjct: 655 RLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNALVRRLLHRGDISRAG 706
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 84/200 (42%), Gaps = 10/200 (5%)
Query: 23 IKELFDVIDSMRSLPKKKFKTGT--------LERWDPRLEPDIVVYNAVLNACVRRKQWE 74
+K + V+ + ++ F+TG L + R + DI YN +LN + +
Sbjct: 539 MKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCKNNFVD 598
Query: 75 GAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLV 133
AF + ++L + + + T+ +++ +L G+ + F + +P+ + Y+++
Sbjct: 599 EAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFATISAYGLVPDVVTYRLIA 658
Query: 134 NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANK 193
L EG E ME+ G ++ + L R L G A + + K+ + N
Sbjct: 659 ENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNALVRRLLHRGDISRAGVYLYKLDE-KNF 717
Query: 194 PLVVSYTGLIQACLDSGNIQ 213
L S T ++ + G Q
Sbjct: 718 SLEASTTSMLISLYSRGEYQ 737
>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12300, mitochondrial; Flags: Precursor
gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 637
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 167/350 (47%), Gaps = 35/350 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T+ + ++ L G + E +++D M + K PD++ N ++
Sbjct: 156 PNTITFSTLINGLCLEGRVSEALELVDRMVEMGHK---------------PDLITINTLV 200
Query: 65 NA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
N C+ K+ E A ++ ++ + G +P+A TYG V+ VM G+ L E RK+++ I
Sbjct: 201 NGLCLSGKEAE-AMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNI 259
Query: 124 P-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+A+ Y ++++ L + G D A + +ME +GI + Y L C+AG+ ++
Sbjct: 260 KLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAK 319
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ + K P VV+++ LI + + G ++ A + +M +P+ +T ++ +
Sbjct: 320 LLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFC 379
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVY 300
+ ++A ++ M +++ D P+I TFN +++ C A + D LEL +
Sbjct: 380 KENHLDKANQMVDLM------VSKGCD------PNIRTFNILINGYCKANRIDDGLEL-F 426
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
++M G+ + + +I GK+ + + ++ + R PP ++
Sbjct: 427 RKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEM--VSRKVPPNIV 474
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 138/307 (44%), Gaps = 19/307 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P ++ ++ + +A + KQ++ + +Q++ +G + T +++ C K L +
Sbjct: 86 PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 145
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y PN + + L+N L EG+ EA+ V+ M G L LC
Sbjct: 146 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 205
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
+GK EA++ +DK+ + +P V+Y ++ SG A + +M+ + V
Sbjct: 206 SGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+I++ +HG + A LF EM + KG + +I T+N ++ R
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEM-----------EMKG-ITTNIITYNILIGGFCNAGR 313
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARA---DRITPPA 348
WDD + + M+ ++ N +I + GK+ E E+ E + R D IT +
Sbjct: 314 WDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTS 373
Query: 349 LIKERFC 355
LI + FC
Sbjct: 374 LI-DGFC 379
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 111/244 (45%), Gaps = 15/244 (6%)
Query: 46 LERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L + + R ++ D V Y+ +++ + + AF + +++ +G + TY +++
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCN 310
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+++ + R + K I PN + + VL+++ +EGK EA ++M RGI
Sbjct: 311 AGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTIT 370
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L C ++A +D + P + ++ LI + I + +F +M
Sbjct: 371 YTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMS 430
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ VT N +++ + E G A +LFQEM ++R+ V P+I T+
Sbjct: 431 LRGVVADTVTYNTLIQGFCELGKLNVAKELFQEM------VSRK------VPPNIVTYKI 478
Query: 283 MLDA 286
+LD
Sbjct: 479 LLDG 482
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/326 (19%), Positives = 132/326 (40%), Gaps = 63/326 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT+ Y S+ + H+ + ++D M S +P+I +N ++
Sbjct: 366 PDTITYTSLIDGFCKENHLDKANQMVDLMVS---------------KGCDPNIRTFNILI 410
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + + + + +++ +G TY +++ GK N+ E F++ V +
Sbjct: 411 NGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVP 470
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + YK+L++ L G++++A+ E +E+ + +Y + +C+A K ++A
Sbjct: 471 PNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDA--- 527
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
D C + K + P + T NIM+ +
Sbjct: 528 WDLFCSLPLKGV-------------------------------KPGVKTYNIMIGGLCKK 556
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G EA LF++M ED + PD +T+N ++ A + + + +
Sbjct: 557 GPLSEAELLFRKMEEDGHA------------PDGWTYNILIRAHLGDGDATKSVKLIEEL 604
Query: 304 LHHGLHFNAKRHLRMILDASRAGKVE 329
G +A ++M++D G+++
Sbjct: 605 KRCGFSVDAST-IKMVIDMLSDGRLK 629
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 113 EFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ FR + S +P + + L + + + + D ++ + ME +GI + + C
Sbjct: 74 DLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCF 133
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNL 230
C K A M KI K+ +P ++++ LI G + A + ++M P+L
Sbjct: 134 CRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDL 193
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
+T N +V G EAM L +M E
Sbjct: 194 ITINTLVNGLCLSGKEAEAMLLIDKMVE 221
>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
Length = 975
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/349 (21%), Positives = 164/349 (46%), Gaps = 33/349 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T+ + ++ L G + E +++D M + K PD++ N ++
Sbjct: 254 PNTITFSTLINGLCLEGRVSEALELVDRMVEMGHK---------------PDLITINTLV 298
Query: 65 NA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
N C+ K+ E A ++ ++ + G +P+A TYG V+ VM G+ L E RK+++ I
Sbjct: 299 NGLCLSGKEAE-AMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNI 357
Query: 124 P-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+A+ Y ++++ L + G D A + +ME +GI + Y L C+AG+ ++
Sbjct: 358 KLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAK 417
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ + K P VV+++ LI + + G ++ A + +M +P+ +T ++ +
Sbjct: 418 LLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFC 477
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ ++A ++ M +++ D P+I TFN +++ R DD +++
Sbjct: 478 KENHLDKANQMVDLM------VSKGCD------PNIRTFNILINGYCKANRIDDGLELFR 525
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
+M G+ + + +I GK+ + + ++ + R PP ++
Sbjct: 526 KMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVS--RKVPPNIV 572
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 138/307 (44%), Gaps = 19/307 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P ++ ++ + +A + KQ++ + +Q++ +G + T +++ C K L +
Sbjct: 184 PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 243
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y PN + + L+N L EG+ EA+ V+ M G L LC
Sbjct: 244 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 303
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
+GK EA++ +DK+ + +P V+Y ++ SG A + +M+ + V
Sbjct: 304 SGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 363
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+I++ +HG + A LF EM + KG + +I T+N ++ R
Sbjct: 364 YSIIIDGLCKHGSLDNAFNLFNEM-----------EMKG-ITTNIITYNILIGGFCNAGR 411
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARA---DRITPPA 348
WDD + + M+ ++ N +I + GK+ E E+ E + R D IT +
Sbjct: 412 WDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTS 471
Query: 349 LIKERFC 355
LI + FC
Sbjct: 472 LI-DGFC 477
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 105/233 (45%), Gaps = 14/233 (6%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D V Y+ +++ + + AF + +++ +G + TY +++ G+++ +
Sbjct: 360 DAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLL 419
Query: 116 RKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
R + K I PN + + VL+++ +EGK EA ++M RGI Y L C
Sbjct: 420 RDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKE 479
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTC 233
++A +D + P + ++ LI + I + +F +M + VT
Sbjct: 480 NHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTY 539
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
N +++ + E G A +LFQEM ++R+ V P+I T+ +LD
Sbjct: 540 NTLIQGFCELGKLNVAKELFQEM------VSRK------VPPNIVTYKILLDG 580
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/283 (20%), Positives = 115/283 (40%), Gaps = 62/283 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT+ Y S+ + H+ + ++D M S +P+I +N ++
Sbjct: 464 PDTITYTSLIDGFCKENHLDKANQMVDLMVS---------------KGCDPNIRTFNILI 508
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + + + + +++ +G TY +++ GK N+ E F++ V +
Sbjct: 509 NGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVP 568
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + YK+L++ L G++++A+ E +E+ + +Y + +C+A K ++A
Sbjct: 569 PNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDA--- 625
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
D C + K + P + T NIM+ +
Sbjct: 626 WDLFCSLPLKGV-------------------------------KPGVKTYNIMIGGLCKK 654
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
G EA LF++M ED + PD +T+N ++ A
Sbjct: 655 GPLSEAELLFRKMEEDGHA------------PDGWTYNILIRA 685
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 113 EFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ FR + S +P + + L + + + + D ++ + ME +GI + + C
Sbjct: 172 DLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCF 231
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNL 230
C K A M KI K+ +P ++++ LI G + A + ++M P+L
Sbjct: 232 CRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDL 291
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
+T N +V G EAM L +M E
Sbjct: 292 ITINTLVNGLCLSGKEAEAMLLIDKMVE 319
>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
Length = 784
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 143/340 (42%), Gaps = 30/340 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD AY ++ +AG ++ V M D ++P IV YN VL
Sbjct: 170 PDAGAYTALVSAFSRAGRFRDAVAVFRRM---------------VDSGVQPAIVTYNVVL 214
Query: 65 NACVRRK-QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-Y 122
+ + W+ ++ +K+ G P TY ++ Y + F +++ S +
Sbjct: 215 HVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGF 274
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ + + L++ + + DEA+ +++MER G S Y L G E+A+
Sbjct: 275 EPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVA 334
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
++ KP VV+YT LI +G I A +++M +N C PNL T N ++K +
Sbjct: 335 LKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHG 394
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G F E M +F E + +PDI T+NT+L ++ V+K
Sbjct: 395 VRGKFPEMMAVFDEF------------RSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFK 442
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
M G ++ +I SR G +L ++ + A
Sbjct: 443 EMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEA 482
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 124/311 (39%), Gaps = 61/311 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKKFKTGTLERW------------ 49
PD V + ++ GQ G E+ V M+ +P++ + +
Sbjct: 416 PDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQI 475
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG-------- 96
+ + PD+ YNAVL+A R +WE A + +++++ KP +Y
Sbjct: 476 YKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYAN 535
Query: 97 ------------------------LVMEVMLACGKYNLVYE----FFRKVQKSYIPNALA 128
LV ++L K N + E F QK +
Sbjct: 536 AKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINV 595
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
+V+ + + + M+ I SAA Y L G CE+ + +I
Sbjct: 596 LNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIK 655
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS---PNLVTCNIMVKAYLEHGL 245
+P SY +I A G ++ A+ +F++MK CS P++VT NI VK+Y+ + +
Sbjct: 656 SSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMK--CSGLKPDVVTYNIFVKSYVSNSM 713
Query: 246 FEEAMKLFQEM 256
FEEA++L + M
Sbjct: 714 FEEAIELVRYM 724
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 22/185 (11%)
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
R + AG+ EA +D A P +YT L+ A +G ++A +F +M +
Sbjct: 149 RVMARAGRLAEASALLD----AAPGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQ 204
Query: 228 PNLVTCNIMVKAYLEHGL-FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
P +VT N+++ Y + + ++E ++L M E V PD YT+NT++
Sbjct: 205 PAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHG------------VAPDRYTYNTLISC 252
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRIT- 345
C + + V+ M G + K +LD GK + E + +R+
Sbjct: 253 CRRRALYKEAAQVFDEMKASGFEPD-KVTFNSLLDVY--GKARRHDEAIEVIQEMERVGC 309
Query: 346 PPALI 350
PP+++
Sbjct: 310 PPSVV 314
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +Y ++ G+ G +KE + M+ +G L+PD+V YN +
Sbjct: 661 PDRYSYNTVIYAYGRKGQMKEASRLFSEMKC-------SG--------LKPDVVTYNIFV 705
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK 107
+ V +E A +++ + QG KP+ TY ++E GK
Sbjct: 706 KSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGK 748
>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 451
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 134/295 (45%), Gaps = 30/295 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+ D ++ +I L ++ +++ +++ ++R R D V YN +
Sbjct: 156 FQDLASFNTILDVLCKSKRVEKAYELFRALRG----------------RFSADTVTYNVI 199
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
+N K+ A VL+++ +G P+ TTY +++ G+ +EFF +++K
Sbjct: 200 VNGWCLIKRTPKALEVLKEMVDRGINPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNC 259
Query: 124 P-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+ + Y +V+ G+ + ++M R G++ S A Y + LC E A++
Sbjct: 260 EIDVVTYTTVVHGFGVAGEIKRTRNVFDEMIREGVLPSVATYNAFIQVLCKKDSVENAVV 319
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYL 241
+++ + +P V +Y LI+ +G + +M+N C PN T N+M++ Y
Sbjct: 320 MFEEMVRKGYEPNVTTYNVLIRGLFHAGKFSRGEELMQRMENEGCEPNFQTYNMMIRYYS 379
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
E E+A+ LF++M G +P++ T+N ++ KR +D+
Sbjct: 380 ECSEVEKALGLFEKMG------------TGDCLPNLDTYNILISGMFVRKRSEDM 422
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/339 (20%), Positives = 144/339 (42%), Gaps = 43/339 (12%)
Query: 13 IAVTLGQAGHIK-ELFDVIDSMRSL---PKKKFKTGTLERWDPRLEPDIVVYNAVLNACV 68
+A+ + HI ++ +I MRSL P K ER+ +PD V
Sbjct: 94 LAIDIAARLHIHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASSGKPDKAVK-------- 145
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALA 128
+ + + G ++ +++V+ + YE FR ++ + + +
Sbjct: 146 ----------LFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSADTVT 195
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA---LMQMD 185
Y V+VN +T +A+ +++M RGI + Y + + AG+ +A ++M
Sbjct: 196 YNVIVNGWCLIKRTPKALEVLKEMVDRGINPNLTTYNTMLQGFFRAGQIRQAWEFFLEMK 255
Query: 186 KI-CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
K C++ VV+YT ++ +G I+ +F++M + P++ T N ++ +
Sbjct: 256 KRNCEID----VVTYTTVVHGFGVAGEIKRTRNVFDEMIREGVLPSVATYNAFIQVLCKK 311
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
E A+ +F+EM + + Y+ P++ T+N ++ ++ E + +RM
Sbjct: 312 DSVENAVVMFEEM------VRKGYE------PNVTTYNVLIRGLFHAGKFSRGEELMQRM 359
Query: 304 LHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARAD 342
+ G N + + MI S +VE +E + D
Sbjct: 360 ENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGTGD 398
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 46/262 (17%), Positives = 103/262 (39%), Gaps = 28/262 (10%)
Query: 92 ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVE 150
A+++ L +++ + V+ +++ I P+ + ++ GK D+AV
Sbjct: 89 ASSFDLAIDIAARLHIHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASSGKPDKAVKLFL 148
Query: 151 DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA-CLDS 209
+M G A + + LC + + E+A ++ + + V+Y ++ CL
Sbjct: 149 NMHEHGCFQDLASFNTILDVLCKSKRVEKAY-ELFRALRGRFSADTVTYNVIVNGWCLIK 207
Query: 210 GNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN----- 264
+ + + +PNL T N M++ + G +A + F EM + + I+
Sbjct: 208 RTPKALEVLKEMVDRGINPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYT 267
Query: 265 -------------------REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
E ++G V+P + T+N + + ++ ++++ M+
Sbjct: 268 TVVHGFGVAGEIKRTRNVFDEMIREG-VLPSVATYNAFIQVLCKKDSVENAVVMFEEMVR 326
Query: 306 HGLHFNAKRHLRMILDASRAGK 327
G N + +I AGK
Sbjct: 327 KGYEPNVTTYNVLIRGLFHAGK 348
>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
Length = 766
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 143/340 (42%), Gaps = 30/340 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD AY ++ +AG ++ V M D ++P IV YN VL
Sbjct: 152 PDAGAYTALVSAFSRAGRFRDAVAVFRRM---------------VDSGVQPAIVTYNVVL 196
Query: 65 NACVRRK-QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-Y 122
+ + W+ ++ +K+ G P TY ++ Y + F +++ S +
Sbjct: 197 HVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGF 256
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ + + L++ + + DEA+ +++MER G S Y L G E+A+
Sbjct: 257 EPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVA 316
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
++ KP VV+YT LI +G I A +++M +N C PNL T N ++K +
Sbjct: 317 LKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHG 376
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G F E M +F E + +PDI T+NT+L ++ V+K
Sbjct: 377 VRGKFPEMMAVFDEF------------RSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFK 424
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
M G ++ +I SR G +L ++ + A
Sbjct: 425 EMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEA 464
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 124/311 (39%), Gaps = 61/311 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKKFKTGTLERW------------ 49
PD V + ++ GQ G E+ V M+ +P++ + +
Sbjct: 398 PDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQI 457
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG-------- 96
+ + PD+ YNAVL+A R +WE A + +++++ KP +Y
Sbjct: 458 YKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYAN 517
Query: 97 ------------------------LVMEVMLACGKYNLVYE----FFRKVQKSYIPNALA 128
LV ++L K N + E F QK +
Sbjct: 518 AKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINV 577
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
+V+ + + + M+ I SAA Y L G CE+ + +I
Sbjct: 578 LNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIK 637
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS---PNLVTCNIMVKAYLEHGL 245
+P SY +I A G ++ A+ +F++MK CS P++VT NI VK+Y+ + +
Sbjct: 638 SSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMK--CSGLKPDVVTYNIFVKSYVSNSM 695
Query: 246 FEEAMKLFQEM 256
FEEA++L + M
Sbjct: 696 FEEAIELVRYM 706
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 22/209 (10%)
Query: 145 AVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204
A A ++ G++ + R + AG+ EA +D A P +YT L+
Sbjct: 107 AAVAARELHGEGVLHHPRVLATAIRVMARAGRLAEASALLD----AAPGPDAGAYTALVS 162
Query: 205 ACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGL-FEEAMKLFQEMAEDSNH 262
A +G ++A +F +M + P +VT N+++ Y + + ++E ++L M E
Sbjct: 163 AFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHG-- 220
Query: 263 INREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA 322
V PD YT+NT++ C + + V+ M G + K +LD
Sbjct: 221 ----------VAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPD-KVTFNSLLDV 269
Query: 323 SRAGKVELLEITWEHLARADRIT-PPALI 350
GK + E + +R+ PP+++
Sbjct: 270 Y--GKARRHDEAIEVIQEMERVGCPPSVV 296
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +Y ++ G+ G +KE + M+ +G L+PD+V YN +
Sbjct: 643 PDRYSYNTVIYAYGRKGQMKEASRLFSEMKC-------SG--------LKPDVVTYNIFV 687
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK 107
+ V +E A +++ + QG KP+ TY ++E GK
Sbjct: 688 KSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGK 730
>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/344 (21%), Positives = 158/344 (45%), Gaps = 30/344 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V S+ + I E ++D M F TG +P+ V +N ++
Sbjct: 149 PNIVTLSSLLNGYCHSKRISEAVALVDQM-------FVTG--------YQPNTVTFNTLI 193
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + A ++ ++ +G +P TYG+V+ + G +L + K+++ +
Sbjct: 194 HGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLE 253
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P L Y +++ L + D+A++ ++ME +GI + Y L CLC+ G+ +A
Sbjct: 254 PGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 313
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + + P V +++ LI A + G + A ++++M K P++VT + ++ +
Sbjct: 314 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 373
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
H +EA ++F+ M S H PD+ +++T++ KR D+ +++
Sbjct: 374 HDRLDEAKQMFEFMV--SKH----------CFPDVVSYSTLIKGFCKAKRVDEGMELFRE 421
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
M GL N + +I +AG ++ + ++ + +D + P
Sbjct: 422 MSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMV-SDGVPP 464
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/338 (22%), Positives = 146/338 (43%), Gaps = 41/338 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y S+ L G + ++ M +ER ++ PD+ ++A++
Sbjct: 289 PNVVTYSSLISCLCNYGRWSDASRLLSDM------------IER---KINPDVFTFSALI 333
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNLVYEFFRKVQ 119
+A V+ + A + ++ ++ PS TY G M L K ++EF V
Sbjct: 334 DAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQ--MFEFM--VS 389
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K P+ ++Y L+ + + DE + +M +RG+VG+ Y L + L AG C+
Sbjct: 390 KHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDM 449
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A ++ P +++Y L+ +G ++ A +F + ++ P + T NIM++
Sbjct: 450 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 509
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G E+ LF ++ KG V PD+ +NTM+ + ++ +
Sbjct: 510 GMCKAGKVEDGWDLFCNLS-----------LKG-VKPDVVAYNTMISGFCRKGSKEEADA 557
Query: 299 VYKRMLHHGLHFNAKRHLRMI----LDASRAGKVELLE 332
++K M G N+ + +I D R EL++
Sbjct: 558 LFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIK 595
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 102/207 (49%), Gaps = 8/207 (3%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V Y+ ++ + K+ + + +++ Q+G + TY +++ + G ++ E
Sbjct: 394 PDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEI 453
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F++ V PN + Y L++ L + GK ++A+ E ++R + + Y + +C
Sbjct: 454 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 513
Query: 174 AGKCEEALMQMDKICKVA---NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PN 229
AGK E+ D C ++ KP VV+Y +I G+ + A +F +MK + PN
Sbjct: 514 AGKVEDGW---DLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 570
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEM 256
N +++A L G E + +L +EM
Sbjct: 571 SGCYNTLIRARLRDGDREASAELIKEM 597
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/298 (18%), Positives = 128/298 (42%), Gaps = 16/298 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P I+ ++ +L+A + +++ + +Q++ G + TY +++ + L
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILINCFCRRSQLPLALAV 138
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y PN + L+N + EAV+ V+ M G + + L L
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
K EA+ +D++ +P +V+Y ++ G+ A + N+M + P ++
Sbjct: 199 HNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLI 258
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
++ ++ ++A+ LF+EM + KG + P++ T+++++ R
Sbjct: 259 YTTIIDGLCKNKHMDDALNLFKEM-----------ETKG-IRPNVVTYSSLISCLCNYGR 306
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
W D + M+ ++ + +I + GK+ E ++ + + R P+++
Sbjct: 307 WSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK--RSIDPSIV 362
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/237 (19%), Positives = 90/237 (37%), Gaps = 57/237 (24%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTL----- 46
+PD V+Y ++ +A + E ++ M +L + F+ G
Sbjct: 393 FPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQE 452
Query: 47 ---ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
E + P+I+ YN +L+ + + E A V + L++ +P+ TY +++E M
Sbjct: 453 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 512
Query: 104 ACGK----------------------YN-LVYEFFRKVQK-------------SYIPNAL 127
GK YN ++ F RK K +PN+
Sbjct: 513 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 572
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
Y L+ R+G + + +++M G G A+ L + G+ +++ + M
Sbjct: 573 CYNTLIRARLRDGDREASAELIKEMRSCGFAGDAST-IGLVTNMLHDGRLDKSFLDM 628
>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62680, mitochondrial; Flags: Precursor
gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 144/332 (43%), Gaps = 40/332 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD VAY +I +L + + + FD FK +ER R P++V Y A++
Sbjct: 188 PDIVAYNAIIDSLCKTKRVNDAFDF-----------FKE--IERKGIR--PNVVTYTALV 232
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N +W A +L + ++ P+ TY +++ + GK E F + V+ S
Sbjct: 233 NGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSID 292
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L+N L + DEA + M +G + Y L C A + E+ +
Sbjct: 293 PDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKL 352
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
++ + V+Y LIQ +G++ A F+QM F SP++ T NI++ +
Sbjct: 353 FREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCD 412
Query: 243 HGLFEEAMKLFQEMAEDSNHIN--------REYDKKGLV---------------IPDIYT 279
+G E+A+ +F++M + ++ R K G V PDI T
Sbjct: 413 NGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVT 472
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
+ TM+ + ++E +Y +M GL N
Sbjct: 473 YTTMMSGLCTKGLLHEVEALYTKMKQEGLMKN 504
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 133/301 (44%), Gaps = 25/301 (8%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPD V +++N RR + A ++ ++ + G KP Y +++ + + N ++
Sbjct: 152 EPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFD 211
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
FF+++++ I PN + Y LVN L + +A + DM ++ I + Y L
Sbjct: 212 FFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFV 271
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
GK EA +++ +++ P +V+Y+ LI I A +F+ M C ++V
Sbjct: 272 KNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVV 331
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAED---SNHINREYDKKGL---------------- 272
+ N ++ + + E+ MKLF+EM++ SN + +G
Sbjct: 332 SYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM 391
Query: 273 ----VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+ PDI+T+N +L + ++++ M + + + +I + GKV
Sbjct: 392 DFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKV 451
Query: 329 E 329
E
Sbjct: 452 E 452
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 140/312 (44%), Gaps = 49/312 (15%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC--------- 105
P IV +N +L+A V+ K+++ + ++++ G + T+ +V+ C
Sbjct: 83 PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142
Query: 106 -GKY-------------NLVYEFFRK-------------VQKSYIPNALAYKVLVNTLWR 138
GK +LV F R+ V+ Y P+ +AY ++++L +
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 202
Query: 139 EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
+ ++A +++ER+GI + Y L LC++ + +A + + K P V++
Sbjct: 203 TKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVIT 262
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y+ L+ A + +G + A +F +M P++VT + ++ H +EA ++F M
Sbjct: 263 YSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMV 322
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
KG + D+ ++NT+++ KR +D +++ M GL N +
Sbjct: 323 S-----------KG-CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 370
Query: 318 MILDASRAGKVE 329
+I +AG V+
Sbjct: 371 LIQGFFQAGDVD 382
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
MS PD V Y S+ L I E + D M S G L D+V Y
Sbjct: 289 MSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVS-------KGCL--------ADVVSY 333
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N ++N + K+ E + +++ Q+G + TY +++ G + EFF ++
Sbjct: 334 NTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDF 393
Query: 121 SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
I P+ Y +L+ L G+ ++A+ EDM++R + Y + R +C GK EE
Sbjct: 394 FGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEE 453
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
A + KP +V+YT ++ G + ++ +MK
Sbjct: 454 AWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMK 497
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/250 (19%), Positives = 104/250 (41%), Gaps = 18/250 (7%)
Query: 107 KYNLVYEFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K N + F + KS P+ + + L++ + + K D +S + ME GI +
Sbjct: 65 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+ C C + AL + K+ K+ +P V+ L+ + +A + ++M
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184
Query: 226 C-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
P++V N ++ + + +A F+E+ ++KG + P++ T+ ++
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI-----------ERKG-IRPNVVTYTALV 232
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA--- 341
+ RW D + M+ + N + ++ + GKV + +E + R
Sbjct: 233 NGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSID 292
Query: 342 -DRITPPALI 350
D +T +LI
Sbjct: 293 PDIVTYSSLI 302
>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 143/325 (44%), Gaps = 34/325 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS----------------LPKKKF--KTGTL 46
P V Y ++ + G I+ +++ M S K+K K TL
Sbjct: 387 PSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTL 446
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ + +L P +V YN++++ + ++ A+ +L LK+ G P TY + ++ +
Sbjct: 447 LSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCK 506
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
+ + F +++ I N + Y L++ + GK DEA+S +E M + +++
Sbjct: 507 SKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSST 566
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L +C GK +E L ++ + K+ KP V +YT LI+ L G+ +A +FNQM
Sbjct: 567 YNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMV 626
Query: 224 NFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+F P++ T + Y G +EA + M E V+PD T+
Sbjct: 627 SFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAG------------VMPDSLTYTL 674
Query: 283 MLDACAAEKRWDDLELVYKRMLHHG 307
++ A D V KRML G
Sbjct: 675 LISAYERLGLAYDAFNVLKRMLDAG 699
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/327 (20%), Positives = 142/327 (43%), Gaps = 29/327 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD+ Y S+ + + + + V + M P K + V Y ++
Sbjct: 247 PDSFTYTSLILGYCRNNDVNSAYKVFNMM---PNKGCRRNE------------VSYTTII 291
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + + + +++++ P+ TY +++ + + + F ++ ++S
Sbjct: 292 HGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCE 351
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y V+V+ + +E K DE+ + +M +G+V S Y L R C G+ E AL
Sbjct: 352 PNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEI 411
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + +P +Y LI ++ A + ++M ++ +P+LVT N ++ +
Sbjct: 412 LGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCK 471
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G F+ A KL + E+ GLV PD +T++ +D KR ++ ++
Sbjct: 472 AGHFDSAYKLLDLLKEN-----------GLV-PDQWTYSVFIDTLCKSKRMEEACDLFNS 519
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
+ G+ N + +I +AGK++
Sbjct: 520 LKEKGIKANEVMYTALIDGHCKAGKID 546
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 111/266 (41%), Gaps = 20/266 (7%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + L P +V YNA++ + E A +L ++ +P+ TY E++
Sbjct: 379 EMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYN---ELICGFS 435
Query: 107 KYNLVYE----FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
K V++ + ++ P+ + Y L++ + G D A ++ ++ G+V
Sbjct: 436 KRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQW 495
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y LC + + EEA + + + K V YT LI +G I A + +M
Sbjct: 496 TYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERM 555
Query: 223 KNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
+ C PN T N ++ + G +E + + + M+ K G V P + T+
Sbjct: 556 HSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMS-----------KMG-VKPTVATYT 603
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHG 307
+++ E +D V+ +M+ G
Sbjct: 604 ILIEEMLREGDFDHANRVFNQMVSFG 629
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 13/177 (7%)
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
Q P++ Y L+ R + A M +G + Y + LC AG+ +
Sbjct: 242 QAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRID 301
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMV 237
E + K+ + P V +YT +I A + +FN+M+ C PN+ T +MV
Sbjct: 302 EGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMV 361
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
A + +E+ ++ EM E KGLV P + T+N ++ E R +
Sbjct: 362 DAMCKERKLDESRRILNEMME-----------KGLV-PSVVTYNALIRGYCEEGRIE 406
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 91/226 (40%), Gaps = 24/226 (10%)
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
+Y L+ L R DE +M IV + + G EA + + KI
Sbjct: 181 SYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKI 240
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLF 246
+ P +YT LI + ++ +A +FN M N C N V+ ++ E G
Sbjct: 241 FQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRI 300
Query: 247 EEAMKLFQEMAEDSNH-------------INREYDKKGLVI----------PDIYTFNTM 283
+E + LF++M ED + + + +G+ + P+++T+ M
Sbjct: 301 DEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVM 360
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+DA E++ D+ + M+ GL + + +I G++E
Sbjct: 361 VDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIE 406
>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 874
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 123/287 (42%), Gaps = 29/287 (10%)
Query: 51 PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
P +P I +YN +L +C+R + E W+ + + P A T+ L++ ++ G
Sbjct: 106 PEKQPSIYLYNVLLKSCIRENRVELVSWLYKDMVLARVSPEAYTFNLLIGLLCDSGHLED 165
Query: 111 VYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
E F K+ + PN + +LV R G + + + M GI+ + LY L
Sbjct: 166 ARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQMRTMGILPNNVLYNTLIS 225
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-----N 224
C GK +A +DK+ + P V ++ I A SG I A+ IF M+
Sbjct: 226 SFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSGKILEASRIFRDMQIDEELG 285
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY----------------- 267
PN++T +M+ + + G+ EEA L M ++N IN E
Sbjct: 286 LPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEA 345
Query: 268 -----DKKGLVI-PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+ G+ I PDIY++N ++D D ++ M+ +G+
Sbjct: 346 WIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGI 392
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 87/431 (20%), Positives = 159/431 (36%), Gaps = 107/431 (24%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTLERWDPR---------- 52
P+ + + L +GH+++ ++ D M R +F G L R R
Sbjct: 145 PEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLEL 204
Query: 53 --------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ P+ V+YN ++++ + + A ++ ++++ G P T+ + +
Sbjct: 205 LGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCG 264
Query: 105 CGKYNLVYEFFRKVQKSY-----IPNALAYKVLVNTLWREGKTDEAVSAVEDMERR---- 155
GK FR +Q PN + YK+++ +EG +EA + V+ M+R
Sbjct: 265 SGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFI 324
Query: 156 ----------GIVGSAAL---------------------YYDLARCLCSAGKCEEALMQM 184
G++ + L Y + LC G +A M M
Sbjct: 325 NLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLM 384
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
+ + P V+Y+ L+ G + A + ++M N CSPN TCN+++ + +
Sbjct: 385 GLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKE 444
Query: 244 GLFEEAMKLFQEMAEDSNHI--------------NREYDKK------------------- 270
G EA L Q+M E + N + DK
Sbjct: 445 GRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLG 504
Query: 271 ----GLV---------IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
GLV PD+ T++T++ R DD + + M+ GL ++ +
Sbjct: 505 NSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDT 564
Query: 318 MILDASRAGKV 328
I R GK+
Sbjct: 565 FIHSFCREGKI 575
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 82/405 (20%), Positives = 156/405 (38%), Gaps = 71/405 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y +I L +AG + + KKKF +E L+PD +Y+ +
Sbjct: 522 PDLVTYSTIISGLCKAGRLDD-----------AKKKF----IEMMSKGLQPDSAIYDTFI 566
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
++ R + AF VL+ ++++G + TY ++L G N ++E +
Sbjct: 567 HSFCREGKISSAFQVLKDMEKRGCNKTLQTYN---SLILGLGSKNQIFELY--------- 614
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+++M +G+ Y + CLC G+ +A +
Sbjct: 615 ----------------------GLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVL 652
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHG 244
D++ + P + S+ LI+A + + + + +F N C +M L G
Sbjct: 653 DEMLQKGISPNISSFRILIKAFCKACDFKASHEVFEIALNVCGHKEALYTLMFNELLVGG 712
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
EA +LF+ ++R +D + D ++D +++ + V R++
Sbjct: 713 KVAEAKELFE------TALDRSFDIGNFLYKD------LIDRLCKDEKLEAASDVLHRLI 760
Query: 305 HHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPALIKERFCNRLEN 360
G F+ + +I + G EL E E + +++ + R +N
Sbjct: 761 DKGYQFDPASFMPVIDGFGKMGNKHVADELAERMMEMASESNKENKAYPNVKGHILRNKN 820
Query: 361 KDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQL 405
KD G+ +V H GS LK K + +GQ ++ L
Sbjct: 821 KDAGNDWPIIV-HRDDGS-----GIALKALKRVQKGWGQGSISSL 859
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/344 (20%), Positives = 139/344 (40%), Gaps = 56/344 (16%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPK------------KKFKTGTL-ERW- 49
+P+ + Y+ + + + G ++E ++D+M+ + G L E W
Sbjct: 288 HPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEAWI 347
Query: 50 ------DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
+EPDI YN V++ + A ++ + + G P TY ++
Sbjct: 348 VLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYC 407
Query: 104 ACGKY----NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+ GK NL++E + + PN VL+++LW+EG+ EA + ++ M +G
Sbjct: 408 SKGKVFEANNLLHEM---ISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGV 464
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKI---CKVANKPLVVSYTGLIQACLDSGNIQNAA 216
+ LC+ G+ ++A+ ++ + A L S+ GL+ +
Sbjct: 465 DTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISGKK----- 519
Query: 217 YIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
C+P+LVT + ++ + G ++A K F EM KGL PD
Sbjct: 520 ---------CTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMS-----------KGLQ-PD 558
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMIL 320
++T + + E + V K M G + + + +IL
Sbjct: 559 SAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLIL 602
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 117/295 (39%), Gaps = 45/295 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLERWDPR 52
PDTV Y ++ G + E +++ M S L +K G + +
Sbjct: 394 PDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENL 453
Query: 53 LEP--------DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ---------------- 88
L+ D V N ++NA Q + A ++ + G
Sbjct: 454 LQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDD 513
Query: 89 -------KPSATTYGLVMEVMLACGKYNLVYE-FFRKVQKSYIPNALAYKVLVNTLWREG 140
P TY ++ + G+ + + F + K P++ Y +++ REG
Sbjct: 514 TISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREG 573
Query: 141 KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYT 200
K A ++DME+RG + Y L L S + E +D++ + P V +Y
Sbjct: 574 KISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFELYGLIDEMREKGVSPDVCTYN 633
Query: 201 GLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
++ + G I +A + ++M + SPN+ + I++KA+ + F+ + ++F+
Sbjct: 634 HMLNCLCEGGRINDAPSVLDEMLQKGISPNISSFRILIKAFCKACDFKASHEVFE 688
>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
Length = 502
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 126/255 (49%), Gaps = 15/255 (5%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
+ + D+V YN + N K+ A VL+++ ++G P+ TTY ++++ G+
Sbjct: 212 KFKADVVSYNIIANGWCLIKRTPKALEVLKEMVERGLTPTITTYNILLKGYFRAGQLKEA 271
Query: 112 YEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+EFF ++++ + + + Y +V+ G+ A +M GI+ S A Y + +
Sbjct: 272 WEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQV 331
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
LC E A++ +++ K P + +Y +I+ +GN+ A +MK + C PN
Sbjct: 332 LCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEPN 391
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+ T N+ ++ + + G E+ + +F++M + S +P++ T+N ++ A
Sbjct: 392 VQTYNVAIRYFCDAGDVEKGLSMFEKMGQGS-------------LPNLDTYNVLISAMFV 438
Query: 290 EKRWDDLELVYKRML 304
K+ +DL + K +L
Sbjct: 439 RKKSEDLVVAGKLLL 453
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/250 (18%), Positives = 111/250 (44%), Gaps = 14/250 (5%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
++ ++ R + ++ + ++ +++ + PS+ T+ ++ E +A GK + + F ++
Sbjct: 115 FDHAIDIAGRMRDYKTVWALVARMRARRIGPSSKTFAIIAERFVAAGKPDRAIKVFLSMR 174
Query: 120 KSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ P L ++ +++ L + + + A + + + R Y +A C +
Sbjct: 175 EHGCPQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTP 234
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
+AL + ++ + P + +Y L++ +G ++ A F QMK ++VT MV
Sbjct: 235 KALEVLKEMVERGLTPTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMV 294
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ G + A K+F EM + ++P T+N M+ + ++
Sbjct: 295 HGFGVVGEIKRARKVFNEMVGEG------------ILPSTATYNAMIQVLCKKDSVENAV 342
Query: 298 LVYKRMLHHG 307
L+++ M+ G
Sbjct: 343 LMFEEMVKKG 352
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 105/279 (37%), Gaps = 18/279 (6%)
Query: 68 VRRKQWEGAFWVLQQLKQQGQKPS----ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
V ++ W LQ K PS A+++ +++ Y V+ +++ I
Sbjct: 84 VLKRLWFHGPKALQFFKHLEYHPSYAHSASSFDHAIDIAGRMRDYKTVWALVARMRARRI 143
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P++ + ++ GK D A+ M G + + LC + + E A
Sbjct: 144 GPSSKTFAIIAERFVAAGKPDRAIKVFLSMREHGCPQDLHSFNTILDILCKSKRVEMAYN 203
Query: 183 QMDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241
+ K+ + K VVSY + CL + + ++ +P + T NI++K Y
Sbjct: 204 NLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKEMVERGLTPTITTYNILLKGYF 263
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G +EA + F +M E I D+ T+ TM+ V+
Sbjct: 264 RAGQLKEAWEFFLQMKEREVEI------------DVVTYTTMVHGFGVVGEIKRARKVFN 311
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
M+ G+ + + MI + VE + +E + +
Sbjct: 312 EMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVK 350
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 80/351 (22%), Positives = 150/351 (42%), Gaps = 42/351 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y + L GH KE ++ MR P++V YN ++
Sbjct: 188 PNVYTYNILVRALCGRGHRKEALSILRDMRG---------------AGCGPNVVTYNTLV 232
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
A R + +GA ++ +++ G KP+ T+ ++ M GK + F + V++
Sbjct: 233 AAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLA 292
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++Y LV + G + EA+S +M ++GI+ + L +C AG E A+
Sbjct: 293 PDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTL 352
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ ++ + + V++T LI G + +A MK P++V N ++ Y
Sbjct: 353 VRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCM 412
Query: 243 HGLFEEAMKLFQEM------------------------AEDSNHINREYDKKGLVIPDIY 278
G +EA +L EM + +N++ +KG V+PD
Sbjct: 413 VGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKG-VLPDAI 471
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
T+++++ EKR D +++K M+ GL + + +I + G VE
Sbjct: 472 TYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVE 522
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/333 (21%), Positives = 145/333 (43%), Gaps = 28/333 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + S+ + +AG+++ ++ MR ER L+ + V + A++
Sbjct: 328 PDVVTFTSLIHVMCKAGNLERAVTLVRQMR------------ERG---LQMNEVTFTALI 372
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ ++ + A ++ +KQ KPS Y ++ G+ + E +++ K
Sbjct: 373 DGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLK 432
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y +++ + T A + M +G++ A Y L R LC + +A +
Sbjct: 433 PDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVL 492
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ K+ +P +YT LI GN+++A + ++M K P++VT ++++ +
Sbjct: 493 FKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSK 552
Query: 243 HGLFEEAMK-LFQEMAEDSNHINREYD------KKGLVIPDIYTFNTMLDACAAEKRWDD 295
EA + LF+ ED N +YD +K ++ + +L + ++
Sbjct: 553 SARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKA----ELKSVLALLKGFCMKGLMNE 608
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+ VY+ ML + + + +I RAG V
Sbjct: 609 ADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNV 641
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 105/258 (40%), Gaps = 56/258 (21%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL-- 110
L+PD+V Y+ +++A + AF + QQ+ ++G P A TY ++ V+ CG+ L
Sbjct: 431 LKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVL--CGEKRLSD 488
Query: 111 VYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
+ F+ + K + P+ Y L++ +EG + A+S + M + G++ Y L
Sbjct: 489 AHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLIN 548
Query: 170 CLCSAGKCEEA------LMQMDKI------------CKVANKPLVVS------------- 198
L + + EA L D I C+ A V++
Sbjct: 549 GLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNE 608
Query: 199 -------------------YTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
Y+ LI +GN+ A QM + +PN + +++
Sbjct: 609 ADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIR 668
Query: 239 AYLEHGLFEEAMKLFQEM 256
E+G+ EA ++ Q++
Sbjct: 669 GLFENGMVVEADQVIQQL 686
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 14/148 (9%)
Query: 194 PLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKL 252
P V++Y ++ A L ++ +A F+ M + +PN+ T NI+V+A G +EA+ +
Sbjct: 154 PSVLAYNAVLLA-LSDASLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSI 212
Query: 253 FQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
++M + P++ T+NT++ A D E + M GL N
Sbjct: 213 LRDM------------RGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNL 260
Query: 313 KRHLRMILDASRAGKVELLEITWEHLAR 340
M+ +AGK+E ++ + R
Sbjct: 261 VTFNSMVNGMCKAGKMEDARKVFDEMVR 288
>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
Length = 649
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 144/324 (44%), Gaps = 29/324 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + +AG + E V D M L G L PD+V YN +L
Sbjct: 330 PDGVIYTMVIGGFCRAGSMSEALRVRDEMVGL-------GCL--------PDVVTYNTLL 374
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N ++ + A +L ++K++G P T+ ++ G + + F + +
Sbjct: 375 NGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLR 434
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ +AY L++ + R+G +A +DM R I + Y L C G+ EEA
Sbjct: 435 PDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGF 494
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMKNFCSPNLVTCNIMVKAYLE 242
+D++ N P +++Y +I+ SGN++ ++ M++ P+L+T N ++ Y++
Sbjct: 495 LDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIK 554
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
A +F M +K +V PD T+N +++ + + ++ V+K+
Sbjct: 555 EENMHGAFNVFNIM------------EKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKK 602
Query: 303 MLHHGLHFNAKRHLRMILDASRAG 326
M G+ + ++ +I AG
Sbjct: 603 MGASGIEPDRYTYMSLINGHVTAG 626
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 134/302 (44%), Gaps = 36/302 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD V + + +AG + ++DSM + L+P IV +N+V
Sbjct: 189 FPDVVTHNVLIDARFRAGDVDAAIALVDSM---------------ANKGLKPGIVTFNSV 233
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
L + ++++ A V + + Q P ++ +++ G+ +F++++Q+ +
Sbjct: 234 LKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGV 293
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ +++ L+ GK D A + + +M+ G+V +Y + C AG EAL
Sbjct: 294 TPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALR 353
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYL 241
D++ + P VV+Y L+ + +A + N+MK +P+L T ++ Y
Sbjct: 354 VRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYC 413
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-------CAAEKRWD 294
G FE+A++LF + + PD+ +N+++D A + WD
Sbjct: 414 RDGNFEKALQLFDTLLHQR------------LRPDVVAYNSLIDGMCRKGDLAKANELWD 461
Query: 295 DL 296
D+
Sbjct: 462 DM 463
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 128/286 (44%), Gaps = 14/286 (4%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V +N +++A R + A ++ + +G KP T+ V++ + +++ E
Sbjct: 190 PDVVTHNVLIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEV 249
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
FR + Q S P+ ++ +L+ R G+ +EA+ ++M++RG+ + L +
Sbjct: 250 FRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFST 309
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
GK + A + ++ + P V YT +I +G++ A + ++M C P++VT
Sbjct: 310 RGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVT 369
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ + +A +L EM E V PD+ TF T++ +
Sbjct: 370 YNTLLNGLCKQHRLLDAEELLNEMKERG------------VTPDLCTFTTLIHGYCRDGN 417
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
++ ++ +LH L + + +I R G + W+ +
Sbjct: 418 FEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDM 463
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 95/219 (43%), Gaps = 16/219 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD VAY S+ + + G + + ++ D M + ++ F P+ V Y+ ++
Sbjct: 435 PDVVAYNSLIDGMCRKGDLAKANELWDDMHA--REIF-------------PNHVTYSILI 479
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
++ + Q E AF L ++ +G P+ TY +++ G +F +K+ Q + +
Sbjct: 480 DSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNIL 539
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + L++ +E A + ME+ + A Y + G EEA
Sbjct: 540 PDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRV 599
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
K+ +P +Y LI + +GN + A + ++M
Sbjct: 600 FKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEM 638
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 89/206 (43%), Gaps = 15/206 (7%)
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
NA ++V++ + + D+A + + +ME+R + + L AG + A+ +
Sbjct: 156 NAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALV 215
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--PNLVTCNIMVKAYLE 242
D + KP +V++ +++ A +F M CS P++ + NI++ +
Sbjct: 216 DSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQ-CSVAPDVRSFNILIGGFCR 274
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G EEAMK ++EM + V PD+ +F+ ++ + + D +
Sbjct: 275 VGEVEEAMKFYKEMQQRG------------VTPDVVSFSCLIGLFSTRGKMDHAAAYLRE 322
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV 328
M GL + + +I RAG +
Sbjct: 323 MKGLGLVPDGVIYTMVIGGFCRAGSM 348
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 77/175 (44%), Gaps = 21/175 (12%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDP 51
+P+ V Y + + + G ++E F +D M S+ K ++G +++
Sbjct: 469 FPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQ 528
Query: 52 RLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
L+ PD++ +N +++ ++ + GAF V ++++ +P A TY +++
Sbjct: 529 FLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFS 588
Query: 104 ACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
G F+K+ S I P+ Y L+N G + EA ++M RG
Sbjct: 589 EQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGF 643
>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 554
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 143/318 (44%), Gaps = 29/318 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + + K+ ++D MR D PDIV YN V+
Sbjct: 191 PDVVTYTILLEATCKRSGYKQAMKLLDEMR---------------DKGCTPDIVTYNVVV 235
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N + + + A L+ L G +P+ +Y +V++ + ++ E ++ QK
Sbjct: 236 NGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCP 295
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + +L++ L R+G + A+ +E + + G ++ Y L C K ++A+
Sbjct: 296 PNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAF 355
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+D + P +VSY L+ A SG + A + +Q+K+ C+P L++ N ++ +
Sbjct: 356 LDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTK 415
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +EA++L EM KGL PDI T++T+ E R +D + +
Sbjct: 416 AGKTKEALELLNEMV-----------SKGLQ-PDIITYSTIAAGLCREDRIEDAIRAFGK 463
Query: 303 MLHHGLHFNAKRHLRMIL 320
+ G+ N + +IL
Sbjct: 464 VQDMGIRPNTVLYNAIIL 481
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 126/284 (44%), Gaps = 32/284 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +AY ++ AG + D+ R L + +EPD YN ++
Sbjct: 124 PDVMAYNAMVAGYCGAGQL-------DAARRLVAEM-----------PVEPDAYTYNTLI 165
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
R + A VL ++ ++ P TY +++E Y + +++ K
Sbjct: 166 RGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCT 225
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y V+VN + +EG+ D+A+ ++++ G + Y + + LC+A + E+A
Sbjct: 226 PDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEEL 285
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
M ++ + P VV++ LI G ++ A + Q+ + C+PN ++ N ++ A+ +
Sbjct: 286 MGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCK 345
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
++AM M + PDI ++NT+L A
Sbjct: 346 QKKMDKAMAFLDLMVSRGCY------------PDIVSYNTLLTA 377
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 96/204 (47%), Gaps = 2/204 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ + YN +L+A ++K+ + A L + +G P +Y ++ + G+ ++ E
Sbjct: 331 PNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVEL 390
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++ K P ++Y +++ L + GKT EA+ + +M +G+ Y +A LC
Sbjct: 391 LHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCR 450
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+ E+A+ K+ + +P V Y +I +A +F M N C PN T
Sbjct: 451 EDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNEST 510
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEM 256
I+++ GL +EA L E+
Sbjct: 511 YTILIEGLAYEGLIKEARDLLDEL 534
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 104/251 (41%), Gaps = 26/251 (10%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+A Y L+ L G+T A++ +++M RR V Y L C ++A+
Sbjct: 156 PDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKL 215
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+D++ P +V+Y ++ G + +A + ++ C PN V+ NI++K
Sbjct: 216 LDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCT 275
Query: 243 HGLFEEAMKLFQEMAEDS--------NHINREYDKKGLV---------------IPDIYT 279
+E+A +L EM + N + +KGLV P+ +
Sbjct: 276 AERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLS 335
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
+N +L A +K+ D M+ G + + + ++ R+G+V++ L
Sbjct: 336 YNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQL- 394
Query: 340 RADRITPPALI 350
D+ P LI
Sbjct: 395 -KDKGCAPVLI 404
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 4 YPDTVAYRSIAVTLGQAGHIK-------ELFD------------VIDSMRSLPKKKFKTG 44
YPD V+Y ++ L ++G + +L D VID + K K
Sbjct: 365 YPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALE 424
Query: 45 TL-ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
L E L+PDI+ Y+ + R + E A +++ G +P+ Y + ++
Sbjct: 425 LLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAI--ILG 482
Query: 104 ACGK---YNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
C + ++ + F + +PN Y +L+ L EG EA ++++ RG+V
Sbjct: 483 LCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVV 540
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 53/141 (37%), Gaps = 23/141 (16%)
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
D R L G+ +EAL ++ A +P + LI+ SG A +
Sbjct: 70 DRLRSLVRRGELDEAL----RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAA---- 121
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
C P+++ N MV Y G + A +L EM V PD YT+NT++
Sbjct: 122 CGPDVMAYNAMVAGYCGAGQLDAARRLVAEMP---------------VEPDAYTYNTLIR 166
Query: 286 ACAAEKRWDDLELVYKRMLHH 306
R + V ML
Sbjct: 167 GLCGRGRTANALAVLDEMLRR 187
>gi|403366299|gb|EJY82949.1| hypothetical protein OXYTRI_19434 [Oxytricha trifallax]
Length = 1420
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 136/268 (50%), Gaps = 27/268 (10%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
+++ + ++PD ++YN +++ACVR A V Q+++ KPS+ TYG++++ +
Sbjct: 690 MKQSNGGVKPDEILYNCLIDACVRFHDVNRAVAVFQEMQFSNIKPSSVTYGILIKAYGSA 749
Query: 106 GKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
+ + + F+K++ + IPN++ Y L++ + + + A+ E M+R G+ + ++
Sbjct: 750 NQLDNAFFVFKKMKDNCLIPNSVTYGCLIDACVKNNQIERAMEVFETMKRDGVQLNTIIF 809
Query: 165 YDLARCLCSAGKCEEAL-----MQM-DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
L + + K ++AL M+M DKI KP V++ LI C+ +I+ A I
Sbjct: 810 TTLIKGFAKSFKLDQALEVYQIMKMDDKI-----KPNNVTFNSLIDCCIRCNSIKKAMEI 864
Query: 219 FNQMKNFCS---PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
F +MK S P+L+T + M+K + ++A+ + +M +K ++
Sbjct: 865 FEEMKQPISHTKPDLITYSTMIKGFCREKNIQQALIMLNDM------------EKNNIMA 912
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRM 303
D +N++LD C + VYK M
Sbjct: 913 DEVLYNSLLDGCCKANEIEMALKVYKNM 940
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 130/296 (43%), Gaps = 37/296 (12%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PD + +N ++ C + K+ + AF + +K Q KP+ TY +++ + C + N +
Sbjct: 580 MRPDEISFNTIIKGCAQEKKLQLAFEMFNLMKMQCLKPNDVTYNSLIDACVRCNRLNSAW 639
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ ++Q++ I P+ Y L+ + E ++ +S D+E+
Sbjct: 640 QLLSEMQQNNIVPDNFTYSTLIKGIRAENQSQNGISNPMDLEKAF--------------- 684
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
AL++ K KP + Y LI AC+ ++ A +F +M+ + P+
Sbjct: 685 --------ALLEQMKQSNGGVKPDEILYNCLIDACVRFHDVNRAVAVFQEMQFSNIKPSS 736
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT I++KAY + A +F++M K +IP+ T+ ++DAC
Sbjct: 737 VTYGILIKAYGSANQLDNAFFVFKKM------------KDNCLIPNSVTYGCLIDACVKN 784
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
+ + V++ M G+ N +I +++ K++ ++ + D+I P
Sbjct: 785 NQIERAMEVFETMKRDGVQLNTIIFTTLIKGFAKSFKLDQALEVYQIMKMDDKIKP 840
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/337 (20%), Positives = 130/337 (38%), Gaps = 67/337 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P +V Y + G A + F V M+ D L P+ V Y ++
Sbjct: 734 PSSVTYGILIKAYGSANQLDNAFFVFKKMK---------------DNCLIPNSVTYGCLI 778
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQ------------------------------------ 88
+ACV+ Q E A V + +K+ G
Sbjct: 779 DACVKNNQIERAMEVFETMKRDGVQLNTIIFTTLIKGFAKSFKLDQALEVYQIMKMDDKI 838
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI---PNALAYKVLVNTLWREGKTDEA 145
KP+ T+ +++ + C E F ++++ P+ + Y ++ RE +A
Sbjct: 839 KPNNVTFNSLIDCCIRCNSIKKAMEIFEEMKQPISHTKPDLITYSTMIKGFCREKNIQQA 898
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+ + DME+ I+ LY L C A + E AL + + KP V+Y+ LI+
Sbjct: 899 LIMLNDMEKNNIMADEVLYNSLLDGCCKANEIEMALKVYKNMEILKIKPSNVTYSILIKI 958
Query: 206 CLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
N+ A + +M K+ P L+ +++ ++ + A +LF +M
Sbjct: 959 YGKQRNLPKALGVLEEMKKDGIRPGLIVYTCLLQTCIKSRQLKTAEQLFHDM-------- 1010
Query: 265 REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
R +G D T+ TM++ C +++D + ++ K
Sbjct: 1011 RIQGIRG----DQLTYQTMINGCLYSQKFDSILILLK 1043
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 103/251 (41%), Gaps = 30/251 (11%)
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY------ 122
R Q + A QL+Q Q + TY + ML L E F + ++ Y
Sbjct: 300 RLNQTQTALQYFHQLQQTSQAQNDPTYYQTVNQMLDSL---LKAELFEEAEQIYNKVFTL 356
Query: 123 ---IPNAL---AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
PN + + ++ R + +A++ + M+ RGI LY + +
Sbjct: 357 SKDQPNCMDMMTFSCMIKGYCRAQRLPQALNVLSIMKERGIKPDEVLYNSIIDGCSKNNQ 416
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNI 235
+A + D++ P +++ LI C+ SGN A + QMK P+ T +
Sbjct: 417 IAKAFLLYDEMLGEGVTPTTITFNSLIDCCVRSGNQDQAWRVLEQMKEKQVKPDNYTYST 476
Query: 236 M---VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+ +K+ + E+A L+ ++ ++SN PD FN +LDAC K+
Sbjct: 477 LFKGIKSENQRQDLEKAFVLYNQL-QNSNDF----------TPDEILFNVLLDACINCKQ 525
Query: 293 WDDLELVYKRM 303
D ++K++
Sbjct: 526 LDRAVELFKQL 536
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/285 (18%), Positives = 115/285 (40%), Gaps = 57/285 (20%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK----- 107
++PD V+YN++++ C + Q AF + ++ +G P+ T+ +++ + G
Sbjct: 397 IKPDEVLYNSIIDGCSKNNQIAKAFLLYDEMLGEGVTPTTITFNSLIDCCVRSGNQDQAW 456
Query: 108 -----------------YNLVYE----------------FFRKVQKS--YIPNALAYKVL 132
Y+ +++ + ++Q S + P+ + + VL
Sbjct: 457 RVLEQMKEKQVKPDNYTYSTLFKGIKSENQRQDLEKAFVLYNQLQNSNDFTPDEILFNVL 516
Query: 133 VNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVAN 192
++ + D AV + ++ + D A S ++ + +N
Sbjct: 517 LDACINCKQLDRAVELFKQLKPQSQPQIQVSNTDDADNSLSLEDSPDSAKNAPAVVNSSN 576
Query: 193 ----KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEHGLFE 247
+P +S+ +I+ C +Q A +FN MK C PN VT N ++ A +
Sbjct: 577 HHFMRPDEISFNTIIKGCAQEKKLQLAFEMFNLMKMQCLKPNDVTYNSLIDACVRCNRLN 636
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
A +L EM +++ ++PD +T++T++ AE +
Sbjct: 637 SAWQLLSEMQQNN------------IVPDNFTYSTLIKGIRAENQ 669
>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
sativus]
Length = 681
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 126/266 (47%), Gaps = 15/266 (5%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
L+ + P++V + ++N R + A +L ++ + G +P+ TYG +++ M
Sbjct: 167 LDLFHQMCRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKI 226
Query: 106 GKYNLVYEFFRKVQK-SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G RK+++ S+I PN + Y +++ LW++G+ +A + +M+ +GI
Sbjct: 227 GDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFT 286
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y + CS+G+ EA + ++ + P VV+Y+ LI A + A ++++M
Sbjct: 287 YNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEML 346
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
PN +T N M+ + + + A +F MA KG PD++TFNT
Sbjct: 347 PRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMA-----------TKGCS-PDVFTFNT 394
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGL 308
++D KR DD + M GL
Sbjct: 395 LIDGYCGAKRIDDGTELLHEMTETGL 420
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 121/267 (45%), Gaps = 3/267 (1%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+ YN +++ +W A +LQ++ ++ P+ TY ++ + K+ E
Sbjct: 282 PDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEEL 341
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ + + + IPN + Y +++ ++ + D A M +G + L C
Sbjct: 342 YDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCG 401
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
A + ++ + ++ + +Y LI G++ A + QM + P++VT
Sbjct: 402 AKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVT 461
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
CN ++ ++G ++A+++F+ M + ++ G V PD+ T+N ++ E +
Sbjct: 462 CNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNG-VEPDVQTYNILISGLINEGK 520
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMI 319
+ + E +YK M H G+ N + MI
Sbjct: 521 FLEAEELYKEMPHRGIVPNTITYSSMI 547
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/365 (21%), Positives = 161/365 (44%), Gaps = 39/365 (10%)
Query: 9 AYRSIAVTLGQAGH-IKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNAC 67
+R ++ L H IK L D ID + + R P ++ +N ++
Sbjct: 40 GFRGESLKLRSGFHEIKGLEDAIDLFSDMVRS------------RPLPSVIDFNKLMGVV 87
Query: 68 VRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNA 126
VR ++ + + Q+++++ ++ ++++ +C K F K+ K + P+
Sbjct: 88 VRMERPDLVISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDV 147
Query: 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK 186
+ + L++ L E + EA+ M R +V + L LC G+ EA+ +D+
Sbjct: 148 VTFSTLLHGLCVEDRVSEALDLFHQMCRPNVV----TFTTLMNGLCREGRVVEAVALLDR 203
Query: 187 ICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC--SPNLVTCNIMVKAYLEHG 244
+ + +P ++Y ++ G+ +A + +M+ PN+V + ++ + G
Sbjct: 204 MVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDG 263
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
+A L+ EM E KG + PD++T+N M+D + RW + + + + ML
Sbjct: 264 RHSDAHNLYTEMQE-----------KG-IFPDLFTYNCMIDGFCSSGRWSEAQRLLQEML 311
Query: 305 HHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLARA---DRITPPALIKERFC--NRL 358
++ N + +I + K E E+ E L R + IT ++I + FC NRL
Sbjct: 312 ERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMI-DGFCKQNRL 370
Query: 359 ENKDY 363
+ ++
Sbjct: 371 DAAEH 375
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/345 (21%), Positives = 148/345 (42%), Gaps = 42/345 (12%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + ++ P++V Y+A++NA V+ +++ A + ++ +G P+ TY +++
Sbjct: 309 EMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQN 368
Query: 107 KYNLV-YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ + + F+ K P+ + L++ + D+ + +M G+V Y
Sbjct: 369 RLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYN 428
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-- 223
L C G AL ++ P +V+ L+ D+G +++A +F M+
Sbjct: 429 TLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKS 488
Query: 224 ----------NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED---------SNHIN 264
N P++ T NI++ + G F EA +L++EM S+ IN
Sbjct: 489 KMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMIN 548
Query: 265 ------------REYDKKGL--VIPDIYTFNTMLDA-CAAEKRWDDLELVYKRMLHHGLH 309
+ +D G PD+ TFNT++ C A + D LEL + M G+
Sbjct: 549 GLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLEL-FCEMGRRGIV 607
Query: 310 FNAKRHLRMILDASRAGKVE-LLEITWEHLARA---DRITPPALI 350
+A ++ +I + G + L+I E ++ D IT +++
Sbjct: 608 ADAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSML 652
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 68/150 (45%), Gaps = 16/150 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T+ Y S+ L + + E + DSM S K F PD+V +N ++
Sbjct: 538 PNTITYSSMINGLCKQSRLDEATQMFDSMGS---KSFS------------PDVVTFNTLV 582
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + + + ++ ++G A TY ++ G N + F+++ S +
Sbjct: 583 SGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSGVY 642
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDME 153
P+ + + ++ LW + + AV+ +ED++
Sbjct: 643 PDTITIRSMLTVLWSKEELKRAVAMLEDLQ 672
>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Brachypodium distachyon]
Length = 651
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 131/302 (43%), Gaps = 36/302 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD V + + +AG ++ +IDSM S ++P +V YN+V
Sbjct: 191 FPDVVTHNVMVDARFRAGDVEAAMALIDSMVS---------------KGIKPGLVTYNSV 235
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSY 122
L +R +W+ A V + + G P ++ +++ G+ F+++++ +
Sbjct: 236 LKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRV 295
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ +++ L+ R G+ D A + +M G++ +Y + C AG EAL
Sbjct: 296 TPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALR 355
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYL 241
D++ P VV+Y L+ + +A + N+MK P+L T ++ Y
Sbjct: 356 VRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYC 415
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA-------AEKRWD 294
G E+A++ F +++ + PDI T+NT++D A + WD
Sbjct: 416 RDGNIEKALQFFDTISDQR------------LRPDIVTYNTLIDGMCRQGDLGKANELWD 463
Query: 295 DL 296
D+
Sbjct: 464 DM 465
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 137/317 (43%), Gaps = 29/317 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + +AG + E V D M + G L PD+V YN +L
Sbjct: 332 PDGVIYTMVIGGFCRAGLMLEALRVRDEMVAF-------GCL--------PDVVTYNTLL 376
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + ++ A +L ++K++G P T+ ++ G +FF + +
Sbjct: 377 NGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLR 436
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ + R+G +A +DM R I + Y L C G+ + A
Sbjct: 437 PDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAF 496
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+D++ P +++Y +I+ SGN+ +M+ + P+L+T N ++ Y++
Sbjct: 497 LDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVK 556
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G EA L + M E+ N V PD T+N ++ + + + VYK+
Sbjct: 557 EGKMHEAFNLLKIM-ENEN-----------VQPDAVTYNMIISGFSVHGNMQEADWVYKK 604
Query: 303 MLHHGLHFNAKRHLRMI 319
M G+ + ++ MI
Sbjct: 605 MGARGIEPDRYTYMSMI 621
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 123/285 (43%), Gaps = 35/285 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD ++ + +AG ++E MR R+ PD+V ++ ++
Sbjct: 262 PDVRSFNMLIGGFCRAGELEEALRFYKEMRGR---------------RVTPDVVSFSCLI 306
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR----KVQK 120
RR + + A L+++++ G P Y +V+ G L+ E R V
Sbjct: 307 GLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAG---LMLEALRVRDEMVAF 363
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+P+ + Y L+N L +E + +A + +M+ RG+ + L C G E+A
Sbjct: 364 GCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKA 423
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
L D I +P +V+Y LI G++ A +++ M + PN VT +I++ +
Sbjct: 424 LQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDS 483
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
+ E G + A EM KG+V P+I T+N+++
Sbjct: 484 HCEKGQVDNAFAFLDEMV-----------NKGIV-PNIMTYNSII 516
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 97/219 (44%), Gaps = 16/219 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ + + G + + ++ D M S ++ F P+ V Y+ ++
Sbjct: 437 PDIVTYNTLIDGMCRQGDLGKANELWDDMHS--REIF-------------PNHVTYSILI 481
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
++ + Q + AF L ++ +G P+ TY +++ G + +F K++ +
Sbjct: 482 DSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVM 541
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ +EGK EA + ++ ME + A Y + G +EA
Sbjct: 542 PDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWV 601
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
K+ +P +Y +I + +GN + + + ++M
Sbjct: 602 YKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEM 640
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 14/130 (10%)
Query: 218 IFNQMKNFCS-PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
+ ++M+ C P++VT N+MV A G E AM L M KG + P
Sbjct: 181 VISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSMV-----------SKG-IKPG 228
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWE 336
+ T+N++L RWD V++ M G+ + + +I RAG++E ++
Sbjct: 229 LVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYK 288
Query: 337 HLARADRITP 346
+ R R+TP
Sbjct: 289 EM-RGRRVTP 297
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 33/192 (17%), Positives = 73/192 (38%), Gaps = 16/192 (8%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ V Y + + + G + F +D M + + P+I+ YN++
Sbjct: 471 FPNHVTYSILIDSHCEKGQVDNAFAFLDEM---------------VNKGIVPNIMTYNSI 515
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
+ R L +++ P TY ++ + GK + + + ++ +
Sbjct: 516 IKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENV 575
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+A+ Y ++++ G EA + M RGI Y + AG +++
Sbjct: 576 QPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQ 635
Query: 183 QMDKICKVANKP 194
D++ + P
Sbjct: 636 LHDEMLQKGLAP 647
>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
Length = 584
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 143/318 (44%), Gaps = 29/318 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + + K+ ++D MR D PDIV YN V+
Sbjct: 193 PDVVTYTILLEATCKRSGYKQAMKLLDEMR---------------DKGCTPDIVTYNVVV 237
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N + + + A L+ L G +P+ +Y +V++ + ++ E ++ QK
Sbjct: 238 NGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCP 297
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + +L++ L R+G + A+ +E + + G ++ Y L C K ++A+
Sbjct: 298 PNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAF 357
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+D + P +VSY L+ A SG + A + +Q+K+ C+P L++ N ++ +
Sbjct: 358 LDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTK 417
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +EA++L EM KGL PDI T++T+ E R +D + +
Sbjct: 418 AGKTKEALELLNEMV-----------SKGLQ-PDIITYSTIAAGLCREDRIEDAIRAFGK 465
Query: 303 MLHHGLHFNAKRHLRMIL 320
+ G+ N + +IL
Sbjct: 466 VQDMGIRPNTVLYNAIIL 483
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 2/211 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ + YN +L+A ++K+ + A L + +G P +Y ++ + G+ ++ E
Sbjct: 333 PNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVEL 392
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++ K P ++Y +++ L + GKT EA+ + +M +G+ Y +A LC
Sbjct: 393 LHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCR 452
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+ E+A+ K+ + +P V Y +I +A +F M N C PN T
Sbjct: 453 EDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNEST 512
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
I+++ GL +EA L E+ I
Sbjct: 513 YTILIEGLAYEGLIKEARDLLDELCSRGEEI 543
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/299 (18%), Positives = 130/299 (43%), Gaps = 21/299 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAF-WVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVY 112
PD++ YNA++ Q + A W ++ ++ A T ++ + G+ N +
Sbjct: 126 PDVMAYNAMMAGYCGAGQVDAARRWCAERAVER----DAYTCDTLIRGLCGRGRTANALA 181
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+++ +P+ + Y +L+ + +A+ +++M +G Y + +C
Sbjct: 182 VLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGIC 241
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
G+ ++A+ + + +P VSY +++ + ++A + +M + C PN+V
Sbjct: 242 QEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVV 301
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N+++ GL E A+++ +++ K G P+ ++N +L A +K
Sbjct: 302 TFNMLISFLCRKGLVEPALEVLEQIP-----------KYG-CSPNSLSYNPLLHAFCKQK 349
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
+ D M+ G + + + ++ R+G+V++ L D+ P LI
Sbjct: 350 KMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQL--KDKGCAPVLI 406
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 81/194 (41%), Gaps = 16/194 (8%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD V+Y ++ L ++G + +++ ++ D P ++ YN V
Sbjct: 367 YPDIVSYNTLLTALCRSGEVDVAVELLHQLK---------------DKGCAPVLISYNTV 411
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
++ + + + A +L ++ +G +P TY + + + F KVQ I
Sbjct: 412 IDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGI 471
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN + Y ++ L + +T A+ M G + + + Y L L G +EA
Sbjct: 472 RPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARD 531
Query: 183 QMDKICKVANKPLV 196
+D++C + L+
Sbjct: 532 LLDELCSRGEEILL 545
>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
Length = 695
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/340 (22%), Positives = 148/340 (43%), Gaps = 30/340 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + +AG + + V D M G L PD+V YN +L
Sbjct: 268 PDGVIYTMVIGGFCRAGLMSDALRVRDEM-------VGCGCL--------PDVVTYNTLL 312
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + ++ A +L +++++G P T+ ++ GK + + F + +
Sbjct: 313 NGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLR 372
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ + R+G D+A +DM R I + Y L C G+ E+A
Sbjct: 373 PDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGF 432
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNI-QNAAYIFNQMKNFCSPNLVTCNIMVKAYLE 242
+D++ P +++Y +I+ SGN+ + ++ M N SP+L+T N ++ Y++
Sbjct: 433 LDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIK 492
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+A KL M ++ V PD+ T+N +++ + + ++++
Sbjct: 493 EDKMHDAFKLLNMMEKEK------------VQPDVVTYNMLINGFSVHGNVQEAGWIFEK 540
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARA 341
M G+ + ++ MI AG E ++ E L R
Sbjct: 541 MCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 580
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 133/302 (44%), Gaps = 36/302 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD V + + +AG + ++DSM S L+P IV YN+V
Sbjct: 127 FPDVVTHNVMVDARFRAGDAEAAMALVDSMVS---------------KGLKPGIVTYNSV 171
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
L R W+ A+ V +++ G P ++ +++ G+ + +++++ I
Sbjct: 172 LKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGI 231
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ +++ L+ R GK D A++ + +M G+V +Y + C AG +AL
Sbjct: 232 KPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALR 291
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYL 241
D++ P VV+Y L+ + +A + N+M+ P+L T ++ Y
Sbjct: 292 VRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYC 351
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA-------AEKRWD 294
G ++A++LF M +N+ + PDI T+NT++D A WD
Sbjct: 352 IEGKLDKALQLFDTM------LNQR------LRPDIVTYNTLIDGMCRQGDLDKANDLWD 399
Query: 295 DL 296
D+
Sbjct: 400 DM 401
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 124/285 (43%), Gaps = 35/285 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD ++ + + G I+E + MR ++PD+V ++ ++
Sbjct: 198 PDVRSFTILIGGFCRVGEIEEALKIYKEMRHRG---------------IKPDLVSFSCLI 242
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR----KVQK 120
RR + + A L++++ G P Y +V+ G L+ + R V
Sbjct: 243 GLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAG---LMSDALRVRDEMVGC 299
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+P+ + Y L+N L +E + +A + +M RG+ + L C GK ++A
Sbjct: 300 GCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKA 359
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
L D + +P +V+Y LI G++ A +++ M + PN VT +I++ +
Sbjct: 360 LQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDS 419
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
+ E G E+A EM IN+ ++P+I T+N+++
Sbjct: 420 HCEKGQVEDAFGFLDEM------INKG------ILPNIMTYNSII 452
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 101/255 (39%), Gaps = 47/255 (18%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V +N +++A R E A ++ + +G KP TY V++
Sbjct: 128 PDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLK-------------- 173
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
L R G D+A ++M+ G+ + L C
Sbjct: 174 --------------------GLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRV 213
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
G+ EEAL ++ KP +VS++ LI G + +A +M+ F P+ V
Sbjct: 214 GEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIY 273
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
+++ + GL +A+++ EM +PD+ T+NT+L+ E+R
Sbjct: 274 TMVIGGFCRAGLMSDALRVRDEMVGCG------------CLPDVVTYNTLLNGLCKERRL 321
Query: 294 DDLELVYKRMLHHGL 308
D E + M G+
Sbjct: 322 LDAEGLLNEMRERGV 336
>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
Japonica Group]
gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
Length = 648
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/340 (22%), Positives = 148/340 (43%), Gaps = 30/340 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + +AG + + V D M G L PD+V YN +L
Sbjct: 329 PDGVIYTMVIGGFCRAGLMSDALRVRDEM-------VGCGCL--------PDVVTYNTLL 373
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + ++ A +L +++++G P T+ ++ GK + + F + +
Sbjct: 374 NGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLR 433
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ + R+G D+A +DM R I + Y L C G+ E+A
Sbjct: 434 PDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGF 493
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNI-QNAAYIFNQMKNFCSPNLVTCNIMVKAYLE 242
+D++ P +++Y +I+ SGN+ + ++ M N SP+L+T N ++ Y++
Sbjct: 494 LDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIK 553
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+A KL M ++ V PD+ T+N +++ + + ++++
Sbjct: 554 EDKMHDAFKLLNMMEKEK------------VQPDVVTYNMLINGFSVHGNVQEAGWIFEK 601
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARA 341
M G+ + ++ MI AG E ++ E L R
Sbjct: 602 MCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 641
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 133/302 (44%), Gaps = 36/302 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD V + + +AG + ++DSM S L+P IV YN+V
Sbjct: 188 FPDVVTHNVMVDARFRAGDAEAAMALVDSMVS---------------KGLKPGIVTYNSV 232
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
L R W+ A+ V +++ G P ++ +++ G+ + +++++ I
Sbjct: 233 LKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGI 292
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ +++ L+ R GK D A++ + +M G+V +Y + C AG +AL
Sbjct: 293 KPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALR 352
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYL 241
D++ P VV+Y L+ + +A + N+M+ P+L T ++ Y
Sbjct: 353 VRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYC 412
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA-------AEKRWD 294
G ++A++LF M +N+ + PDI T+NT++D A WD
Sbjct: 413 IEGKLDKALQLFDTM------LNQR------LRPDIVTYNTLIDGMCRQGDLDKANDLWD 460
Query: 295 DL 296
D+
Sbjct: 461 DM 462
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 124/285 (43%), Gaps = 35/285 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD ++ + + G I+E + MR ++PD+V ++ ++
Sbjct: 259 PDVRSFTILIGGFCRVGEIEEALKIYKEMRHRG---------------IKPDLVSFSCLI 303
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR----KVQK 120
RR + + A L++++ G P Y +V+ G L+ + R V
Sbjct: 304 GLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAG---LMSDALRVRDEMVGC 360
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+P+ + Y L+N L +E + +A + +M RG+ + L C GK ++A
Sbjct: 361 GCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKA 420
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
L D + +P +V+Y LI G++ A +++ M + PN VT +I++ +
Sbjct: 421 LQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDS 480
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
+ E G E+A EM IN+ ++P+I T+N+++
Sbjct: 481 HCEKGQVEDAFGFLDEM------INKG------ILPNIMTYNSII 513
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 101/255 (39%), Gaps = 47/255 (18%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V +N +++A R E A ++ + +G KP TY V++
Sbjct: 189 PDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLK-------------- 234
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
L R G D+A ++M+ G+ + L C
Sbjct: 235 --------------------GLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRV 274
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
G+ EEAL ++ KP +VS++ LI G + +A +M+ F P+ V
Sbjct: 275 GEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIY 334
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
+++ + GL +A+++ EM +PD+ T+NT+L+ E+R
Sbjct: 335 TMVIGGFCRAGLMSDALRVRDEMVGCG------------CLPDVVTYNTLLNGLCKERRL 382
Query: 294 DDLELVYKRMLHHGL 308
D E + M G+
Sbjct: 383 LDAEGLLNEMRERGV 397
>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Vitis vinifera]
Length = 718
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 156/354 (44%), Gaps = 33/354 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y ++ + G++ + F + D +RS+ L P IV YN +L
Sbjct: 372 PDVVSYNTLIYGYCRLGNLMKAFLLFDELRSI---------------YLFPTIVTYNTLL 416
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ R+ + E A + ++ +G P TY +++ G ++ EFF ++ +
Sbjct: 417 DGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLE 476
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
++ AY + + G T A S E+M +G +Y + LC G EEA
Sbjct: 477 LDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASEL 536
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ K+ P V+YT +I A L++G ++ IF +M +P++VT +++ +
Sbjct: 537 LQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAG 596
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G E A F EM E KG ++P++ T+N++++ +R D +
Sbjct: 597 KGRLERAFIYFSEMQE-----------KG-ILPNVITYNSLINGLCKVRRMDQAYNFFAE 644
Query: 303 MLHHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLARA---DRITPPALIKE 352
M+ G+ N + +I + G E L + + L R D T AL+K+
Sbjct: 645 MVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQ 698
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 134/301 (44%), Gaps = 18/301 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P IV YN +L++ + + + +L +++++G P+ TY +++ + G++
Sbjct: 230 IKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAK 289
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++ K+ + +A Y L+ + +G EA+S E+M +G + A Y L
Sbjct: 290 GLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGL 349
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
C G+ +A+ Q+ + P VVSY LI GN+ A +F+++++ + P +
Sbjct: 350 CKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTI 409
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N ++ G E A +L EM + + PDI T+ +++
Sbjct: 410 VTYNTLLDGLCRQGELEVAQQLKVEMINEG------------IAPDIVTYTILVNGSCKM 457
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARADRITPPAL 349
+ + MLH GL ++ + I+ + G + E LA+ PP L
Sbjct: 458 GSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKG---FPPDL 514
Query: 350 I 350
I
Sbjct: 515 I 515
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 66/319 (20%), Positives = 119/319 (37%), Gaps = 34/319 (10%)
Query: 29 VIDSMRSLPKKKFKTGTLERW---DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ 85
V+ S R+ P+ + L RW P V+ A+L + A+WV++++
Sbjct: 87 VLSSFRTSPRMALR---LFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWVMERVIN 143
Query: 86 Q-----------GQKPSATTYGLVMEVMLACGKYNLVYE---FFRKVQKSYI-PNALAYK 130
G S + ++ ++ K ++V + F K+ KS + P+
Sbjct: 144 ANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCN 203
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
++ L + +AV M GI + Y L C GK ++ L + ++ +
Sbjct: 204 RILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRR 263
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEA 249
P V+Y LI G + A + +M K + T N ++ Y G+ EA
Sbjct: 264 GCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEA 323
Query: 250 MKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH 309
+ L +EM KG P + T+N+ + R D ML + L
Sbjct: 324 LSLQEEMV-----------LKG-ASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLL 371
Query: 310 FNAKRHLRMILDASRAGKV 328
+ + +I R G +
Sbjct: 372 PDVVSYNTLIYGYCRLGNL 390
>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
Length = 333
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/340 (22%), Positives = 148/340 (43%), Gaps = 30/340 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + +AG + + V D M G L PD+V YN +L
Sbjct: 14 PDGVIYTMVIGGFCRAGLMSDALRVRDEM-------VGCGCL--------PDVVTYNTLL 58
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + ++ A +L +++++G P T+ ++ GK + + F + +
Sbjct: 59 NGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLR 118
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ + R+G D+A +DM R I + Y L C G+ E+A
Sbjct: 119 PDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGF 178
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNI-QNAAYIFNQMKNFCSPNLVTCNIMVKAYLE 242
+D++ P +++Y +I+ SGN+ + ++ M N SP+L+T N ++ Y++
Sbjct: 179 LDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIK 238
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+A KL M ++ V PD+ T+N +++ + + ++++
Sbjct: 239 EDKMHDAFKLLNMMEKEK------------VQPDVVTYNMLINGFSVHGNVQEAGWIFEK 286
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARA 341
M G+ + ++ MI AG E ++ E L R
Sbjct: 287 MCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 326
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 20/159 (12%)
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
++ + +M G+V +Y + C AG +AL D++ P VV+Y L+
Sbjct: 1 MAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNG 60
Query: 206 CLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
+ +A + N+M+ P+L T ++ Y G ++A++LF M +N
Sbjct: 61 LCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTM------LN 114
Query: 265 REYDKKGLVIPDIYTFNTMLDACA-------AEKRWDDL 296
+ + PDI T+NT++D A WDD+
Sbjct: 115 QR------LRPDIVTYNTLIDGMCRQGDLDKANDLWDDM 147
>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63080, mitochondrial; Flags: Precursor
gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 614
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 146/314 (46%), Gaps = 27/314 (8%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD V + +++ + + A +++++ +G +P TYG V+ + G+ +L
Sbjct: 167 QPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALN 226
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
K++K I + + Y ++++L + D+A++ +M+ +GI Y L CLC
Sbjct: 227 LLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLC 286
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
+ G+ +A + + + P VV++ LI A G + A +F++M + PN+V
Sbjct: 287 NYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIV 346
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAE------------------------DSNHINREY 267
T N ++ + H +EA ++F M D + R+
Sbjct: 347 TYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDM 406
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
++GLV + T+ T++ D+ ++V+K+M+ G+H N + ++ + GK
Sbjct: 407 SRRGLV-GNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGK 465
Query: 328 VELLEITWEHLARA 341
+E + +E+L ++
Sbjct: 466 LEKAMVVFEYLQKS 479
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/337 (21%), Positives = 142/337 (42%), Gaps = 39/337 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y S+ L G + ++ M LER ++ P++V +N+++
Sbjct: 273 PDVFTYSSLISCLCNYGRWSDASRLLSDM------------LER---KINPNVVTFNSLI 317
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKSYI 123
+A + + A + ++ Q+ P+ TY ++ + + + F V K +
Sbjct: 318 DAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCL 377
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L+N + K + + DM RRG+VG+ Y L A C+ A M
Sbjct: 378 PDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMV 437
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ P +++Y L+ +G ++ A +F + K+ P++ T NIM + +
Sbjct: 438 FKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCK 497
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G E+ LF ++ KG V PD+ +NTM+ + ++ ++ +
Sbjct: 498 AGKVEDGWDLFCSLS-----------LKG-VKPDVIAYNTMISGFCKKGLKEEAYTLFIK 545
Query: 303 MLHHG-----LHFNA--KRHLRMILDASRAGKVELLE 332
M G +N + HLR D +A EL++
Sbjct: 546 MKEDGPLPDSGTYNTLIRAHLR---DGDKAASAELIK 579
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/355 (22%), Positives = 146/355 (41%), Gaps = 73/355 (20%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRS-------LPKKKFKTGTLERWDP-- 51
M PDTV + ++ L Q E +++ M + G +R +P
Sbjct: 164 MGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDL 223
Query: 52 -----------RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
++E D+V+Y+ V+++ + + + A + ++ +G +P TY ++
Sbjct: 224 ALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLIS 283
Query: 101 VMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+ G+++ + + I PN + + L++ +EGK EA ++M +R I
Sbjct: 284 CLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP 343
Query: 160 SAALYYDLARCLCSAGKCEEA-----LM--------------QMDKICK----------- 189
+ Y L C + +EA LM ++ CK
Sbjct: 344 NIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELF 403
Query: 190 --VANKPLV---VSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
++ + LV V+YT LI + + NA +F QM + PN++T N ++ ++
Sbjct: 404 RDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKN 463
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAA---EKRWD 294
G E+AM +F EY +K + PDIYT+N M + C A E WD
Sbjct: 464 GKLEKAMVVF------------EYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWD 506
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 120/258 (46%), Gaps = 14/258 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
++ YN ++N RR Q A +L ++ + G PS T ++ + +
Sbjct: 99 NLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALV 158
Query: 116 RK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ V+ Y P+ + + LV+ L++ K EAV+ VE M +G Y + LC
Sbjct: 159 DQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKR 218
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTC 233
G+ + AL ++K+ K + VV Y+ +I + ++ +A +F +M N P++ T
Sbjct: 219 GEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTY 278
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
+ ++ +G + +A +L +M E IN P++ TFN+++DA A E +
Sbjct: 279 SSLISCLCNYGRWSDASRLLSDMLE--RKIN----------PNVVTFNSLIDAFAKEGKL 326
Query: 294 DDLELVYKRMLHHGLHFN 311
+ E ++ M+ + N
Sbjct: 327 IEAEKLFDEMIQRSIDPN 344
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/221 (20%), Positives = 90/221 (40%), Gaps = 16/221 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ +A K++ D ++ R + ++ T V Y ++
Sbjct: 378 PDVVTYNTLINGFCKA---KKVVDGMELFRDMSRRGLVGNT------------VTYTTLI 422
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + A V +Q+ G P+ TY +++ + GK F +QKS +
Sbjct: 423 HGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKME 482
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y ++ + + GK ++ + +G+ Y + C G EEA
Sbjct: 483 PDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTL 542
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
K+ + P +Y LI+A L G+ +A + +M++
Sbjct: 543 FIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRS 583
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y ++ + +AG +++ +D+ S+ SL K PD++ YN ++
Sbjct: 483 PDIYTYNIMSEGMCKAGKVEDGWDLFCSL-SLKGVK--------------PDVIAYNTMI 527
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ ++ E A+ + ++K+ G P + TY ++ L G E ++++
Sbjct: 528 SGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFA 587
Query: 125 NALAYKVLVNTLWREGKTDEA 145
+ LV + +G+ D+
Sbjct: 588 GDASTYGLVTDMLHDGRLDKG 608
>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63130, mitochondrial; Flags: Precursor
gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/325 (21%), Positives = 148/325 (45%), Gaps = 49/325 (15%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD +N +++ R + A ++ ++ +G +P TYG+V+ + G +L
Sbjct: 183 QPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALS 242
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+K+++ I P + Y +++ L ++A++ +M+ +GI + Y L RCLC
Sbjct: 243 LLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 302
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM---------- 222
+ G+ +A + + + P VV+++ LI A + G + A ++++M
Sbjct: 303 NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF 362
Query: 223 ------KNFCS--------------------PNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
FC PN+VT N ++K + + +E M+LF+EM
Sbjct: 363 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREM 422
Query: 257 AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316
++ +GLV + T+ T++ + D+ ++V+K+M+ G+ + +
Sbjct: 423 SQ-----------RGLV-GNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYS 470
Query: 317 RMILDASRAGKVELLEITWEHLARA 341
++ GKVE + +E+L R+
Sbjct: 471 ILLDGLCNNGKVETALVVFEYLQRS 495
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 148/313 (47%), Gaps = 24/313 (7%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPDIV N++LN + A ++ Q+ + G +P + T+ ++ + ++N E
Sbjct: 148 EPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLF---RHNRASE 204
Query: 114 FF----RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
R V K P+ + Y ++VN L + G D A+S ++ ME+ I +Y +
Sbjct: 205 AVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIID 264
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSP 228
LC+ +AL ++ +P VV+Y LI+ + G +A+ + + M + +P
Sbjct: 265 ALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINP 324
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
N+VT + ++ A+++ G EA KL+ EM I R D PDI+T++++++
Sbjct: 325 NVVTFSALIDAFVKEGKLVEAEKLYDEM------IKRSID------PDIFTYSSLINGFC 372
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLAR---ADRI 344
R D+ + +++ M+ N + +I +A +V E +E+ E R + +
Sbjct: 373 MHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTV 432
Query: 345 TPPALIKERFCNR 357
T LI F R
Sbjct: 433 TYTTLIHGFFQAR 445
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 119/255 (46%), Gaps = 14/255 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEF 114
++ Y+ ++N RR Q A VL ++ + G +P T ++ + + V
Sbjct: 115 NLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLV 174
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ V+ Y P++ + L++ L+R + EAV+ V+ M +G Y + LC
Sbjct: 175 GQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKR 234
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTC 233
G + AL + K+ + +P VV Y +I A + N+ +A +F +M N PN+VT
Sbjct: 235 GDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY 294
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N +++ +G + +A +L +M E IN P++ TF+ ++DA E +
Sbjct: 295 NSLIRCLCNYGRWSDASRLLSDMIE--RKIN----------PNVVTFSALIDAFVKEGKL 342
Query: 294 DDLELVYKRMLHHGL 308
+ E +Y M+ +
Sbjct: 343 VEAEKLYDEMIKRSI 357
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/340 (21%), Positives = 148/340 (43%), Gaps = 47/340 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y S+ L G + ++ M +ER ++ P++V ++A++
Sbjct: 289 PNVVTYNSLIRCLCNYGRWSDASRLLSDM------------IER---KINPNVVTFSALI 333
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNLVYEFFRKVQ 119
+A V+ + A + ++ ++ P TY G M L K+ ++E +
Sbjct: 334 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH--MFELM--IS 389
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K PN + Y L+ + + DE + +M +RG+VG+ Y L A +C+
Sbjct: 390 KDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDN 449
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A + ++ P +++Y+ L+ ++G ++ A +F + ++ P++ T NIM++
Sbjct: 450 AQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIE 509
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G E+ LF ++ KG V P++ T+ TM+ + ++ +
Sbjct: 510 GMCKAGKVEDGWDLFCSLS-----------LKG-VKPNVVTYTTMMSGFCRKGLKEEADA 557
Query: 299 VYKRMLHHG-----LHFNA--KRHLRMILDASRAGKVELL 331
+++ M G +N + HLR D +A EL+
Sbjct: 558 LFREMKEEGPLPDSGTYNTLIRAHLR---DGDKAASAELI 594
>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
Length = 667
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 132/288 (45%), Gaps = 14/288 (4%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPD +N ++N + A ++ ++ + G +P+ TY ++ + G +L +
Sbjct: 132 EPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALD 191
Query: 114 FFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
RK+ +++ + Y ++++L R+G D A+S ++ME +GI S Y L LC
Sbjct: 192 LLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLC 251
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
AGK + + + + P V+++ LI + G +Q A ++ +M SPN +
Sbjct: 252 KAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTI 311
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ Y EA + M ++ PDI TF +++ K
Sbjct: 312 TYNSLMDGYCMQNRLSEANNMLDLMVRNNCS------------PDIVTFTSLIKGYCKVK 359
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
R D+ +++++ GL N + ++ ++GK+E+ E ++ +
Sbjct: 360 RVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMV 407
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 72/328 (21%), Positives = 144/328 (43%), Gaps = 31/328 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPR-LEPDIVVYNAV 63
P+ V Y SI + ++G D+ L + D R ++ D+ Y+ +
Sbjct: 168 PNVVTYNSIVNGICKSGDTSLALDL----------------LRKMDERNVKADVFTYSTI 211
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSY 122
+++ R + A + ++++ +G K S TY ++ + GK+N + + + +
Sbjct: 212 IDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKI 271
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
IPN + + VL++ +EGK EA ++M +GI + Y L C + EA
Sbjct: 272 IPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANN 331
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+D + + P +V++T LI+ + +F ++ K N VT +I+V+ +
Sbjct: 332 MLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFC 391
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G E A +LFQEM V+PD+ T+ +LD + + +++
Sbjct: 392 QSGKLEIAEELFQEMVSLG------------VLPDVMTYGILLDGLCDNGKLEKALEIFE 439
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ ++ + + +I + GKVE
Sbjct: 440 DLQKSKMNLDIVMYTIIIEGMCKGGKVE 467
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 102/204 (50%), Gaps = 2/204 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDIV + +++ + K+ + + +++ ++G + TY ++++ GK + E
Sbjct: 343 PDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEEL 402
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F++ V +P+ + Y +L++ L GK ++A+ ED+++ + +Y + +C
Sbjct: 403 FQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCK 462
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVT 232
GK E+A + KP V++YT +I G++ A + +M+ + PN T
Sbjct: 463 GGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCT 522
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEM 256
N +++A+L G + KL +EM
Sbjct: 523 YNTLIRAHLRDGDLTASAKLIEEM 546
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 14/260 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P +V ++ + KQ+ ++++ G + T +++ C K Y
Sbjct: 63 PSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 122
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
KV K Y P+ + L+N L E K EAV V M G + Y + +C
Sbjct: 123 LGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICK 182
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVT 232
+G AL + K+ + K V +Y+ +I + G I A +F +M+ +LVT
Sbjct: 183 SGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVT 242
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N +V + G + + ++L ++M +IP++ TFN ++D E +
Sbjct: 243 YNSLVGGLCKAGKWNDGVQLLKDMTSRK------------IIPNVITFNVLIDVFVKEGK 290
Query: 293 WDDLELVYKRMLHHGLHFNA 312
+ +YK M+ G+ N
Sbjct: 291 LQEANELYKEMITKGISPNT 310
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 105/236 (44%), Gaps = 14/236 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P+ + YN++++ + + A +L + + P T+ +++ + +
Sbjct: 306 ISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGM 365
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ FRK+ K + N + Y +LV + GK + A ++M G++ Y L L
Sbjct: 366 KLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGL 425
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C GK E+AL + + K +V YT +I+ G +++A +F + PN+
Sbjct: 426 CDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNV 485
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+T +M+ + G EA L ++M ED N P+ T+NT++ A
Sbjct: 486 MTYTVMISGLCKKGSLSEANILLRKMEEDGNE------------PNDCTYNTLIRA 529
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 85/173 (49%), Gaps = 1/173 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L + V Y+ ++ + + E A + Q++ G P TYG++++ + GK
Sbjct: 376 LVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKAL 435
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F +QKS + + + Y +++ + + GK ++A + + +G+ + Y + L
Sbjct: 436 EIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGL 495
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
C G EA + + K+ + N+P +Y LI+A L G++ +A + +MK+
Sbjct: 496 CKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKS 548
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 21/178 (11%)
Query: 6 DTVAYRSIAVTLGQAGHIK---ELFDVIDSMRSLPKKKF---------KTGTLER----- 48
+TV Y + Q+G ++ ELF + S+ LP G LE+
Sbjct: 379 NTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIF 438
Query: 49 ---WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
++ DIV+Y ++ + + E A+ + L +G KP+ TY +++ +
Sbjct: 439 EDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKK 498
Query: 106 GKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G + RK+++ PN Y L+ R+G + +E+M+ G A+
Sbjct: 499 GSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADAS 556
>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
Length = 1078
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 156/354 (44%), Gaps = 33/354 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y ++ + G++ + F + D +RS+ L P IV YN +L
Sbjct: 372 PDVVSYNTLIYGYCRLGNLMKAFLLFDELRSI---------------YLFPTIVTYNTLL 416
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ R+ + E A + ++ +G P TY +++ G ++ EFF ++ +
Sbjct: 417 DGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLE 476
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
++ AY + + G T A S E+M +G +Y + LC G EEA
Sbjct: 477 LDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASEL 536
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ K+ P V+YT +I A L++G ++ IF +M +P++VT +++ +
Sbjct: 537 LQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAG 596
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G E A F EM E KG ++P++ T+N++++ +R D +
Sbjct: 597 KGRLERAFIYFSEMQE-----------KG-ILPNVITYNSLINGLCKVRRMDQAYNFFAE 644
Query: 303 MLHHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLARA---DRITPPALIKE 352
M+ G+ N + +I + G E L + + L R D T AL+K+
Sbjct: 645 MVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQ 698
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 134/301 (44%), Gaps = 18/301 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P IV YN +L++ + + + +L +++++G P+ TY +++ + G++
Sbjct: 230 IKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAK 289
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++ K+ + +A Y L+ + +G EA+S E+M +G + A Y L
Sbjct: 290 GLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGL 349
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
C G+ +A+ Q+ + P VVSY LI GN+ A +F+++++ + P +
Sbjct: 350 CKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTI 409
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N ++ G E A +L EM + + PDI T+ +++
Sbjct: 410 VTYNTLLDGLCRQGELEVAQQLKVEMINEG------------IAPDIVTYTILVNGSCKM 457
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARADRITPPAL 349
+ + MLH GL ++ + I+ + G + E LA+ PP L
Sbjct: 458 GSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKG---FPPDL 514
Query: 350 I 350
I
Sbjct: 515 I 515
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 97/248 (39%), Gaps = 22/248 (8%)
Query: 29 VIDSMRSLPKKKFKTGTLERW---DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ 85
V+ S R+ P+ + L RW P V+ A+L + A+WV++++
Sbjct: 87 VLSSFRTSPRMALR---LFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWVMERVIN 143
Query: 86 Q-----------GQKPSATTYGLVMEVMLACGKYNLVYE---FFRKVQKSYI-PNALAYK 130
G S + ++ ++ K ++V + F K+ KS + P+
Sbjct: 144 ANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCN 203
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
++ L + +AV M GI + Y L C GK ++ L + ++ +
Sbjct: 204 RILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRR 263
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEA 249
P V+Y LI G + A + +M K + T N ++ Y G+ EA
Sbjct: 264 GCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEA 323
Query: 250 MKLFQEMA 257
+ L +EM
Sbjct: 324 LSLQEEMV 331
>gi|298712182|emb|CBJ33054.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 903
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 123/277 (44%), Gaps = 14/277 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D YN L+AC +QW A +L+ + ++G KP +Y V+ CG+ +
Sbjct: 456 DACSYNTALSACEVGEQWGRALSLLRDMPKRGVKPVVISYNTVISACGKCGEGDQALALL 515
Query: 116 RKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
R++ ++ +P+ + + + L G+ D+AV + +M R G+ A Y L A
Sbjct: 516 REMPERGLMPDVITFNSAIAALSNSGRPDDAVRLMREMPRAGVAADAITYSSALTGLAHA 575
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
G+ E+AL + ++ P V+ YT I+AC ++G A + +M +PNL +
Sbjct: 576 GRWEQALSLLREMQGAGVSPTVICYTAAIRACGEAGKGDEALLLLREMPTAGVTPNLFSY 635
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
+ + A + G +E+ + L EM GL P+ + + + C +W
Sbjct: 636 SATISACGKDGRWEQGLALLNEM-----------PALGLT-PNEFCYTAAITGCGIGGQW 683
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ ++ M+ G+ + + + G+V+L
Sbjct: 684 ERAVATFRSMIASGIQPTVVGYTSAVSALAHCGEVDL 720
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/351 (23%), Positives = 146/351 (41%), Gaps = 58/351 (16%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+ + P++ + G+AG ++E ++ R+ +E D+V Y
Sbjct: 153 LGAMPNSYCVNAALDACGKAGRVQEALGLMRDARA---------------SGIELDVVSY 197
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQ-GQKPSATTYGLVMEVMLACGK------------ 107
N + ACV WE A ++++++ + G KP+ TY ++V CGK
Sbjct: 198 NCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAAIKVCGRCGKADEAASLLIEMK 257
Query: 108 ----------YNLVYEFFRKVQK--------------SYIPNALAYKVLVNTLWREGKTD 143
Y+ V+ FR+V PN Y + + T G+ +
Sbjct: 258 DGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDWPVKPNVFNYNLAICTCTDCGEWE 317
Query: 144 EAVSAVEDMERRGIVGSAALYYDLARCLCS-AGKCEEALMQMDKICKVANKPLVVSYTGL 202
EA+ + M G V + Y++ C AG+ E+A+ ++ +V KP V+S+T
Sbjct: 318 EALDLLHFMREVGGVEPDVVTYNIVVAACGKAGQGEKAIEIFREMSEVGIKPDVISFTTA 377
Query: 203 IQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM----A 257
I AC G + A IF +M + PN++T N ++ A + G +EEA+ F E+
Sbjct: 378 ISACGSCGLSEEALSIFREMERAGVRPNIITHNAVMSACIAAGQWEEALDFFTEVVDGSG 437
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+ + + D ++NT L AC ++W + + M G+
Sbjct: 438 AANGGGGGGPPPDPVEVADACSYNTALSACEVGEQWGRALSLLRDMPKRGV 488
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 124/279 (44%), Gaps = 16/279 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ NA L+AC + + + A +++ + G + +Y + + G + L
Sbjct: 157 PNSYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVSYNCAIPACVTGGDWELALSM 216
Query: 115 FRKVQKSYI--PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R+++ Y PN + Y+ + R GK DEA S + +M+ G+ ++Y +
Sbjct: 217 IREMEAEYGIKPNHITYQAAIKVCGRCGKADEAASLLIEMKDGGVPLKTSVYSAVFNAFR 276
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF--CSPNL 230
+ A + +I KP V +Y I C D G + A + + M+ P++
Sbjct: 277 RVDHWQAAASTLREIHDWPVKPNVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEPDV 336
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT NI+V A + G E+A+++F+EM+E + PD+ +F T + AC +
Sbjct: 337 VTYNIVVAACGKAGQGEKAIEIFREMSEVG------------IKPDVISFTTAISACGSC 384
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++ +++ M G+ N H ++ AG+ E
Sbjct: 385 GLSEEALSIFREMERAGVRPNIITHNAVMSACIAAGQWE 423
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/341 (21%), Positives = 137/341 (40%), Gaps = 44/341 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y T G +E D++ MR + +EPD+V YN V+
Sbjct: 298 PNVFNYNLAICTCTDCGEWEEALDLLHFMREVGG--------------VEPDVVTYNIVV 343
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
AC + Q E A + +++ + G KP ++ + +CG FR+++++ +
Sbjct: 344 AACGKAGQGEKAIEIFREMSEVGIKPDVISFTTAISACGSCGLSEEALSIFREMERAGVR 403
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDM---------------ERRGIVGSAALYYDLA 168
PN + + +++ G+ +EA+ ++ + + A Y+ A
Sbjct: 404 PNIITHNAVMSACIAAGQWEEALDFFTEVVDGSGAANGGGGGGPPPDPVEVADACSYNTA 463
Query: 169 RCLCSAG-KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
C G + AL + + K KP+V+SY +I AC G A + +M +
Sbjct: 464 LSACEVGEQWGRALSLLRDMPKRGVKPVVISYNTVISACGKCGEGDQALALLREMPERGL 523
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
P+++T N + A G ++A++L +EM + V D T+++ L
Sbjct: 524 MPDVITFNSAIAALSNSGRPDDAVRLMREM------------PRAGVAADAITYSSALTG 571
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
A RW+ + + M G+ + I AGK
Sbjct: 572 LAHAGRWEQALSLLREMQGAGVSPTVICYTAAIRACGEAGK 612
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 68/375 (18%), Positives = 136/375 (36%), Gaps = 51/375 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + + S L +G D + MR +P+ D + Y++ L
Sbjct: 525 PDVITFNSAIAALSNSGRPD---DAVRLMREMPRAGVAA------------DAITYSSAL 569
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+WE A +L++++ G P+ Y + GK + R++ + +
Sbjct: 570 TGLAHAGRWEQALSLLREMQGAGVSPTVICYTAAIRACGEAGKGDEALLLLREMPTAGVT 629
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN +Y ++ ++G+ ++ ++ + +M G+ + Y G+ E A+
Sbjct: 630 PNLFSYSATISACGKDGRWEQGLALLNEMPALGLTPNEFCYTAAITGCGIGGQWERAVAT 689
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--PNLVTCNIMVKAYL 241
+ +P VV YT + A G + A + ++MK PN T ++ A
Sbjct: 690 FRSMIASGIQPTVVGYTSAVSALAHCGEVDLALELLSEMKEEAGIEPNEQTYAAVILACG 749
Query: 242 EHGLFEEAMKLFQEMAE------------------------DSNHINREYDKKGLVIPDI 277
G ++ ++MA ++ + E + G V P +
Sbjct: 750 NGGQGHLVAQVQRDMASAGITPRLTGYLSAIRASGECGNWSEATSLLGEMEAAG-VPPTV 808
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV--------E 329
+N + AC +W + + M GL ++ I +AG+ E
Sbjct: 809 SCYNAAITACGKSGKWQEALDLLDEMPGKGLVRDSGTLSAAISACQKAGRGVKAAGLVEE 868
Query: 330 LLEITWEHLARADRI 344
+LE+ E D +
Sbjct: 869 MLEMAREKGGERDSL 883
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/285 (20%), Positives = 99/285 (34%), Gaps = 29/285 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ +Y + G+ G ++ +++ M +L L P+ Y A +
Sbjct: 630 PNLFSYSATISACGKDGRWEQGLALLNEMPALG---------------LTPNEFCYTAAI 674
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR--KVQKSY 122
C QWE A + + G +P+ Y + + CG+ +L E K +
Sbjct: 675 TGCGIGGQWERAVATFRSMIASGIQPTVVGYTSAVSALAHCGEVDLALELLSEMKEEAGI 734
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN Y ++ G+ DM GI Y R G EA
Sbjct: 735 EPNEQTYAAVILACGNGGQGHLVAQVQRDMASAGITPRLTGYLSAIRASGECGNWSEATS 794
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--------KNFCSPNLVTCN 234
+ ++ P V Y I AC SG Q A + ++M S + C
Sbjct: 795 LLGEMEAAGVPPTVSCYNAAITACGKSGKWQEALDLLDEMPGKGLVRDSGTLSAAISACQ 854
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
+ GL EE +++ +E + + + + G +P+ T
Sbjct: 855 KAGRGVKAAGLVEEMLEMAREKGGERDSL----EGAGAAVPNPST 895
>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
Length = 691
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 153/347 (44%), Gaps = 34/347 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLE----- 47
P+ Y + L GH KE ++ MR +L F+ G ++
Sbjct: 148 PNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERL 207
Query: 48 ---RWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
D L+P++V +N+++N + + E A V ++ ++G P +Y ++
Sbjct: 208 VGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCK 267
Query: 105 CG-KYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + + F QK +P+ + + L++ + + G + AV+ V M RG+ +
Sbjct: 268 AGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVT 327
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ L C G ++AL+ + + + KP VV Y LI G + A + ++M+
Sbjct: 328 FTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEME 387
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
P++VT + ++ AY ++ A +L Q+M E KG V+PD T+++
Sbjct: 388 AKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLE-----------KG-VLPDAITYSS 435
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++ EKR D +++K M+ GL + + +I + G VE
Sbjct: 436 LIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVE 482
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/333 (20%), Positives = 144/333 (43%), Gaps = 28/333 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + S+ + +AG+++ ++ MR ER L+ + V + A++
Sbjct: 288 PDVVTFTSLIHVMCKAGNLEWAVTLVRQMR------------ERG---LQMNEVTFTALI 332
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ ++ + A ++ ++Q KPS Y ++ G+ + E +++ K
Sbjct: 333 DGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLK 392
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y +++ + T A + M +G++ A Y L R LC + +A +
Sbjct: 393 PDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVL 452
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ K+ +P +YT LI GN++ A + ++M K P++VT ++++ +
Sbjct: 453 FKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSK 512
Query: 243 HGLFEEAMK-LFQEMAEDSNHINREYD------KKGLVIPDIYTFNTMLDACAAEKRWDD 295
EA + LF+ E+ N +YD +K ++ + +L + ++
Sbjct: 513 SARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKA----ELKSVLALLKGFCMKGLMNE 568
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+ VY+ ML + + + +I RAG V
Sbjct: 569 ADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNV 601
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/257 (20%), Positives = 101/257 (39%), Gaps = 54/257 (21%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD+V Y+ +++A + AF + QQ+ ++G P A TY ++ V+ + + +
Sbjct: 391 LKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAH 450
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F+ + K + P+ Y L++ +EG + A+S + M + G++ Y L L
Sbjct: 451 VLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGL 510
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC------------------------- 206
+ + EA + K+ P Y L+ C
Sbjct: 511 SKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEAD 570
Query: 207 ------------LD-------------SGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKA 239
LD +GN+ A QM + F +PN + +++
Sbjct: 571 KVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGF-APNSTSTISLIRG 629
Query: 240 YLEHGLFEEAMKLFQEM 256
E+G+ EA ++ Q++
Sbjct: 630 LFENGMVVEADQVIQQL 646
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 14/148 (9%)
Query: 194 PLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKL 252
P V++Y ++ A L ++ +A F+ M + +PN+ T NI+++A G +EA+ +
Sbjct: 114 PSVLAYNAVLLA-LSDASLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSI 172
Query: 253 FQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
++M + P++ T+NT++ A D E + ML GL N
Sbjct: 173 LRDM------------RGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNL 220
Query: 313 KRHLRMILDASRAGKVELLEITWEHLAR 340
M+ +AGK+E ++ + R
Sbjct: 221 VTFNSMVNGMCKAGKMEDARKVFDEMMR 248
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 91/237 (38%), Gaps = 37/237 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y S+ GH KE ++ SL K K G L PD+V Y+ ++
Sbjct: 463 PDEFTYTSLI-----DGHCKE--GNVERALSLHDKMVKAGVL--------PDVVTYSVLI 507
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV--------MLACGKYNLVYEFFR 116
N + + A +L +L + P+ T Y +M +LA K +
Sbjct: 508 NGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMN 567
Query: 117 KVQKSYIP--------NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
+ K Y + Y VL++ R G +A+S + M +RG ++ L
Sbjct: 568 EADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLI 627
Query: 169 RCLCSAGKCEEA---LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
R L G EA + Q+ C +A+ + LI L+ GN+ + + M
Sbjct: 628 RGLFENGMVVEADQVIQQLLNCCSLADAE---ASKALIDLNLNEGNVDAVLDVLHGM 681
>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63070, mitochondrial; Flags: Precursor
gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 590
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 141/292 (48%), Gaps = 15/292 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD V + +++ + + A +++++ +G +P TYG V+ + G+ +L
Sbjct: 177 QPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALN 236
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
K++K I + + Y +++ L + D+A ME +GI Y L CLC
Sbjct: 237 LLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLC 296
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNL 230
+ G+ +A + + + P +V + LI A + G + A ++++M C P++
Sbjct: 297 NYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDV 356
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
V N ++K + ++ EE M++F+EM++ +GLV + T+ T++
Sbjct: 357 VAYNTLIKGFCKYKRVEEGMEVFREMSQ-----------RGLV-GNTVTYTTLIHGFFQA 404
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARAD 342
+ D+ ++V+K+M+ G+H + + ++ G VE + +E++ + D
Sbjct: 405 RDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRD 456
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 128/319 (40%), Gaps = 65/319 (20%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V Y +I L + H+ + FD+ + M + ++PD+ YN +++
Sbjct: 249 DVVIYNTIIDGLCKYKHMDDAFDLFNKMET---------------KGIKPDVFTYNPLIS 293
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY--I 123
+W A +L + ++ P + +++ + GK + + ++ KS
Sbjct: 294 CLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCF 353
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ +AY L+ + + +E + +M +RG+VG+ Y L A C+ A M
Sbjct: 354 PDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 413
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN------------------- 224
++ P +++Y L+ ++GN++ A +F M+
Sbjct: 414 FKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCK 473
Query: 225 ----------FCS-------PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
FCS PN+VT M+ + GL EEA LF EM ED
Sbjct: 474 AGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGP------ 527
Query: 268 DKKGLVIPDIYTFNTMLDA 286
+P+ T+NT++ A
Sbjct: 528 ------LPNSGTYNTLIRA 540
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 12/209 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA---CGKYNLV 111
PD+V YN ++ + K+ E V +++ Q+G + TY ++ C +V
Sbjct: 354 PDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 413
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++ + V P+ + Y +L++ L G + A+ E M++R + Y + L
Sbjct: 414 FK--QMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEAL 471
Query: 172 CSAGKCEEALMQMDKICKVA---NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCS 227
C AGK E+ D C ++ KP VV+YT ++ G + A +F +MK +
Sbjct: 472 CKAGKVEDG---WDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPL 528
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
PN T N +++A L G + +L +EM
Sbjct: 529 PNSGTYNTLIRARLRDGDEAASAELIKEM 557
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/303 (20%), Positives = 127/303 (41%), Gaps = 26/303 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P IV ++ +L+A + +++ + +Q++ G + TY + + + +L
Sbjct: 73 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAI 132
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y P+ + L+N + EAV+ V+ M G + L L
Sbjct: 133 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQ 192
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
K EA+ ++++ +P +V+Y +I G A + N+M K ++V
Sbjct: 193 HNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVI 252
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ ++ ++A LF +M + KG + PD++T+N ++ R
Sbjct: 253 YNTIIDGLCKYKHMDDAFDLFNKM-----------ETKG-IKPDVFTYNPLISCLCNYGR 300
Query: 293 WDDLELVYKRMLHHGLH-----FNAKRHLRMILDA-SRAGKVELLEITWEHLARADRITP 346
W D + ML ++ FNA ++DA + GK+ E ++ + ++ P
Sbjct: 301 WSDASRLLSDMLEKNINPDLVFFNA------LIDAFVKEGKLVEAEKLYDEMVKSKHCFP 354
Query: 347 PAL 349
+
Sbjct: 355 DVV 357
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 21/184 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD + Y + L G+++ V + M ++ D +L DIV Y +
Sbjct: 423 HPDIMTYNILLDGLCNNGNVETALVVFEYM-------------QKRDMKL--DIVTYTTM 467
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY- 122
+ A + + E + + L +G KP+ TY +M G F ++++
Sbjct: 468 IEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGP 527
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSA--VEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+PN+ Y L+ R+G DEA SA +++M G G A+ + L + G+ +++
Sbjct: 528 LPNSGTYNTLIRARLRDG--DEAASAELIKEMRSCGFAGDAST-FGLVTNMLHDGRLDKS 584
Query: 181 LMQM 184
+ M
Sbjct: 585 FLDM 588
>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
Length = 600
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 125/263 (47%), Gaps = 23/263 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
PD + Y S+ L G + E V DSM ++ + K G +E
Sbjct: 316 PDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEI 375
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
LE PD YN++++ V+ ++ + AF V ++ G KP+A T+ ++M +
Sbjct: 376 LELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFK 435
Query: 105 CGKYNLVYEFFRK-VQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
GK + + F++ ++K +P L +Y +L++ L + G+ EA ++M RGI+
Sbjct: 436 DGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECH 495
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ- 221
Y L L AG+ EA ++ + K+ P V +Y+ LI +DS + A +F +
Sbjct: 496 TYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEM 555
Query: 222 MKNFCSPNLVTCNIMVKAYLEHG 244
MK C+PN VT ++ + + G
Sbjct: 556 MKRGCAPNEVTYKVLRRGFRAAG 578
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 77/348 (22%), Positives = 145/348 (41%), Gaps = 30/348 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ VAY ++ L +AG I++ K F+ E P Y V+
Sbjct: 141 PNVVAYTAVIDGLLKAGRIEDGL-----------KNFE----EMSGSSCVPTRTTYTVVI 185
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKSYI 123
+ + + A V +Q+ Q+G P TY +++ K + + + K
Sbjct: 186 DGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPE 245
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P A+ Y +V+ + +EA + M RG ++ L S G+ EEA
Sbjct: 246 PTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQV 305
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ ++ P V+ YT LI +G + A ++F+ M + C+P+ +T +++ + +
Sbjct: 306 LTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSK 365
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G E A ++ + MA K V PD + +N+++D +R D VY R
Sbjct: 366 IGNVEAAGEILELMA------------KSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDR 413
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
M+ G+ NA ++ + GK + ++ + + + PP L+
Sbjct: 414 MVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEV-PPTLV 460
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 135/318 (42%), Gaps = 30/318 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y SI + I E +VI MR ER EP + ++ ++L
Sbjct: 246 PTAVTYGSIVHGFCKLDMINEAKEVIAQMR------------ERG---CEPGLFIFTSLL 290
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + + E A+ VL ++ +G P Y +++++ + G+ F ++K
Sbjct: 291 SYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCA 350
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+AL Y ++ + G + A +E M + G+ Y L + ++A
Sbjct: 351 PDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGV 410
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
D++ KP V++ L+ G A +F +M K P LV+ I++
Sbjct: 411 YDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLG 470
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G EA FQEM I+R +IP+ +T+ +++ + A R + + + +
Sbjct: 471 KAGRVSEAFLQFQEM------IDRG------IIPECHTYTSLIYSLAKAGRIPEAKKLVE 518
Query: 302 RMLHHGLHFNAKRHLRMI 319
M+ G++ + + + +I
Sbjct: 519 DMVKLGVNPDVQAYSALI 536
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 105/247 (42%), Gaps = 22/247 (8%)
Query: 87 GQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEA 145
G +P+ +Y V+ + + K + Y+FF + P+ +A+ L++ + G+
Sbjct: 2 GCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVG 61
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL--VVSYTGLI 203
+ +R LY + C AG + + V K V+SYT +I
Sbjct: 62 HKLLNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGYFR-----AVTPKASLDVISYTTVI 115
Query: 204 QACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNH 262
+ DS I A +F ++K CSPN+V ++ L+ G E+ +K F+EM+ S
Sbjct: 116 KGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSS-- 173
Query: 263 INREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA 322
+P T+ ++D + D V+++M+ G + + +I
Sbjct: 174 ----------CVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGF 223
Query: 323 SRAGKVE 329
S+A K++
Sbjct: 224 SKASKMD 230
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/257 (20%), Positives = 103/257 (40%), Gaps = 19/257 (7%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P V+Y ++ L + E + +SM D EPD++ +
Sbjct: 1 MGCEPTIVSYNTVISGLASIDKMDEAYKFFNSM---------------IDNGCEPDVIAF 45
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
+++ + Q + +L Q ++ +P Y V+ G + Y FR V
Sbjct: 46 TTLIHGFCKAGQPQVGHKLLNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGY--FRAVTP 102
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ ++Y ++ L + DEA E+++ G + Y + L AG+ E+
Sbjct: 103 KASLDVISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDG 162
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
L +++ + P +YT +I + + +A +F QM + C P+ +T ++
Sbjct: 163 LKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDG 222
Query: 240 YLEHGLFEEAMKLFQEM 256
+ + +EA KL M
Sbjct: 223 FSKASKMDEARKLLDVM 239
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 22/194 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLER---- 48
PD AY S+ + + + F V D M + L FK G +R
Sbjct: 386 PDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSL 445
Query: 49 WDPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
+ LE P +V Y +++ + + AF Q++ +G P TY ++ +
Sbjct: 446 FKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLA 505
Query: 104 ACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G+ + + K + P+ AY L+ L D A ++M +RG +
Sbjct: 506 KAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEV 565
Query: 163 LYYDLARCLCSAGK 176
Y L R +AG+
Sbjct: 566 TYKVLRRGFRAAGR 579
>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 144/341 (42%), Gaps = 50/341 (14%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN----L 110
PDIV YN ++N + K+ E A +L +++ +P++ TY ++M+ + G+ L
Sbjct: 8 PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67
Query: 111 VYEFFRK--------------------------------VQKSYIPNALAYKVLVNTLWR 138
+ E RK ++K PN + Y L+N +
Sbjct: 68 LGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCK 127
Query: 139 EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
+G EA + + M RGI Y + LC G+ +AL D + + +P V+
Sbjct: 128 KGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVT 187
Query: 199 YTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y LI G I +A IF M + +V+ N ++ +G +EAMKLF +
Sbjct: 188 YNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLL 247
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
ED N++ PD+ TFNT++ E R D +Y M+ G N
Sbjct: 248 EDGNYVE----------PDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHI 297
Query: 318 MILDASRAGKVELLEITWEHLARADRI---TPPALIKERFC 355
+I + ++G ++ W+ + + + T +++ + FC
Sbjct: 298 LIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFC 338
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 75/346 (21%), Positives = 147/346 (42%), Gaps = 32/346 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + L + G ++ D+ D M E+ + EP V YN ++
Sbjct: 148 PDVYTYTCMIGGLCKDGRARKALDLFDLMT------------EKGE---EPSTVTYNVLI 192
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV--QKSY 122
N + AF + + + ++G++ +Y ++ + GK + + F + +Y
Sbjct: 193 NGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNY 252
Query: 123 I-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+ P+ + + ++ L +EG+ D+AV + M RG G+ + L +G ++A+
Sbjct: 253 VEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAM 312
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAY 240
++ K+ P +Y+ +I + A +F++MK + SP L N ++ +
Sbjct: 313 ELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASL 372
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ E+A +LFQEM E + PD +FN M+D + +
Sbjct: 373 CKESSLEQARRLFQEMKESNCE------------PDTISFNIMIDGTLKAGDIHSAKELL 420
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
M GL +A + I S+ G++E + ++ + A ITP
Sbjct: 421 NDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMI-ASGITP 465
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P+ ++Y ++N L +E + ++AV + +ME ++ Y L LC G+ EEA+
Sbjct: 7 LPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMR 66
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ ++ + + VV Y+ LI G + +F++M + SPN+V + ++ +
Sbjct: 67 LLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFC 126
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+ GL+ EA + M E + PD+YT+ M+ + R
Sbjct: 127 KKGLWREATAVLHTMTERG------------IQPDVYTYTCMIGGLCKDGR 165
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/242 (17%), Positives = 93/242 (38%), Gaps = 21/242 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLER---- 48
PD + + ++ L + G + + ++ D+M L + K+G +++
Sbjct: 255 PDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMEL 314
Query: 49 WDP----RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
W L P Y+ +++ + A + ++K G P+ Y +M +
Sbjct: 315 WKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCK 374
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
F+++++S P+ +++ ++++ + G A + DM++ G+ A
Sbjct: 375 ESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYT 434
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L G+ EEA D + P Y LI+ + I+ + QM
Sbjct: 435 YSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMA 494
Query: 224 NF 225
+
Sbjct: 495 DM 496
>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 566
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 134/308 (43%), Gaps = 31/308 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ Y + L + G K+ F V D MR ER + +IV YN +
Sbjct: 265 FPNLYTYNCVMNQLCKDGRTKDAFQVFDEMR------------ERG---VSCNIVTYNTL 309
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSY 122
+ R + A V+ Q+K G P+ TY +++ GK R ++ +
Sbjct: 310 IGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGL 369
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ + Y +LV+ R+G T A V++ME RGI S Y L + E+A+
Sbjct: 370 SPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQ 429
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAY 240
+ ++ P V +Y+ LI G + A+ +F M KN C PN V N M+ Y
Sbjct: 430 LRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKN-CEPNEVIYNTMILGY 488
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ G A+KL +EM E + P++ ++ M++ E++ + E +
Sbjct: 489 CKEGSSYRALKLLKEMEEKE------------LAPNVASYRYMIEVLCKERKSKEAERLV 536
Query: 301 KRMLHHGL 308
++M+ G+
Sbjct: 537 EKMIDSGI 544
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/334 (21%), Positives = 149/334 (44%), Gaps = 42/334 (12%)
Query: 19 QAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFW 78
+AG I++ FD++ +E + P++V+Y +++ C ++ + E A
Sbjct: 175 EAGEIEKSFDLL---------------IELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKD 219
Query: 79 VLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLW 137
+ ++ + G + TY +++ + G +E + K+Q+ + PN Y ++N L
Sbjct: 220 LFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLC 279
Query: 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV 197
++G+T +A ++M RG+ + Y L LC K EA +D++ P ++
Sbjct: 280 KDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLI 339
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+Y LI G + A + +K+ SP+LVT NI+V + G A K+ +EM
Sbjct: 340 TYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEM 399
Query: 257 AED------------------SNHINR------EYDKKGLVIPDIYTFNTMLDACAAEKR 292
E S+++ + ++ GLV PD++T++ ++ + +
Sbjct: 400 EERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLV-PDVHTYSVLIHGFCIKGQ 458
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
++ ++K M+ N + MIL + G
Sbjct: 459 MNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEG 492
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/289 (16%), Positives = 114/289 (39%), Gaps = 49/289 (16%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
+Y ++N+ V+ + + ++ G P + + ++ ++ +N + FF +
Sbjct: 96 LYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNEN 155
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ + + ++ +L+ + C AG+ E
Sbjct: 156 KSKVVLDVYSFGILI-----------------------------------KGCCEAGEIE 180
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
++ + ++ + P VV YT LI C G I+ A +F +M N T +++
Sbjct: 181 KSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLI 240
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
++G+ ++ +++++M ED V P++YT+N +++ + R D
Sbjct: 241 NGLFKNGVKKQGFEMYEKMQEDG------------VFPNLYTYNCVMNQLCKDGRTKDAF 288
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
V+ M G+ N + +I R K+ + + ++D I P
Sbjct: 289 QVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQM-KSDGINP 336
>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
Length = 694
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 148/327 (45%), Gaps = 28/327 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ +AG + V+ MR K P++V +N+++
Sbjct: 185 PNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAK--------------PNLVTFNSMV 230
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N + + EGA V ++ ++G P +Y ++ G + F ++ Q+ +
Sbjct: 231 NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLV 290
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + L++ + G ++AV+ V M RG+ + + L C G ++AL+
Sbjct: 291 PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLA 350
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
++++ K +P VV Y LI G + A + +M+ P++VT + ++ Y +
Sbjct: 351 VEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCK 410
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + A +L Q+M KKG V+PD T+++++ EKR +D +++
Sbjct: 411 VGNLDSAFQLNQKML-----------KKG-VLPDAITYSSLIRGLCEEKRLNDACELFEN 458
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
ML G+ + + +I + G VE
Sbjct: 459 MLQLGVQPDEFTYTTLIDGHCKEGNVE 485
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/329 (20%), Positives = 145/329 (44%), Gaps = 20/329 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + S+ +AG++++ ++ MR ER L + V + A++
Sbjct: 291 PDVVTFTSLIHATCKAGNLEQAVALVAQMR------------ERG---LRMNEVTFTALI 335
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ ++ + A ++++++ G +PS Y ++ G+ +L E R+++ +
Sbjct: 336 DGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVK 395
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y +++ + G D A + M ++G++ A Y L R LC + +A
Sbjct: 396 PDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACEL 455
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + ++ +P +YT LI GN++ A + ++M + P++VT ++++ +
Sbjct: 456 FENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSK 515
Query: 243 HGLFEEAMK-LFQEMAEDSNHINREYDKKGLVI--PDIYTFNTMLDACAAEKRWDDLELV 299
+EA + LF+ ED N +YD L + + +L + + + V
Sbjct: 516 SARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKV 575
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKV 328
Y+ ML + + +I R G V
Sbjct: 576 YQSMLDRNWKLDGSVYSILIHGHCRGGNV 604
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 109/269 (40%), Gaps = 32/269 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y +I + G++ DS L +K K G L PD + Y++++
Sbjct: 396 PDVVTYSTIISGYCKVGNL-------DSAFQLNQKMLKKGVL--------PDAITYSSLI 440
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
K+ A + + + Q G +P TY +++ G + ++K +
Sbjct: 441 RGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVL 500
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA--------- 174
P+ + Y VL+N L + +T EA + + V Y L C A
Sbjct: 501 PDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALL 560
Query: 175 -GKCEEALM-QMDKICKVA---NKPLVVS-YTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
G C + LM + DK+ + N L S Y+ LI GN++ A QM ++ S
Sbjct: 561 KGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFS 620
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
PN + +V+ E G+ EA Q++
Sbjct: 621 PNSTSTISLVRGLFEEGMVVEADNAIQDL 649
>gi|297724885|ref|NP_001174806.1| Os06g0499301 [Oryza sativa Japonica Group]
gi|52076487|dbj|BAD45366.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|125597333|gb|EAZ37113.1| hypothetical protein OsJ_21452 [Oryza sativa Japonica Group]
gi|255677074|dbj|BAH93534.1| Os06g0499301 [Oryza sativa Japonica Group]
Length = 642
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/331 (21%), Positives = 145/331 (43%), Gaps = 38/331 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVV----Y 60
PD Y ++ L AG + + ++ M + D VV +
Sbjct: 207 PDKFTYSTVVSALADAGRVDDAVALVHEMVA--------------------DGVVAAEAF 246
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N VL A +R +GA + ++ +G P+ TY +++ +L CG+ R++++
Sbjct: 247 NPVLRAMLRAGDVKGAAKLFGFMQLKGCVPTTATYNVLVHGLLVCGRAGAAMGVMRRMER 306
Query: 121 -SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+P + Y +V+ L R G+ +A E+MER G+ + +Y + C +G+ +
Sbjct: 307 EGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMERNGLAWNEFVYSTVITGFCKSGEIDC 366
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
AL + + +P VV Y+ +I + G + A +F +M + C+PN++T +++
Sbjct: 367 ALKVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIHSKCAPNIITYGSIIQ 426
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
Y + G A+ +++EM +P+ +++ +++ R D +
Sbjct: 427 GYFKIGDTSRALSVWEEMIGAG------------CVPNAVSYSILINGLCNVGRLKDAMM 474
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
V+K ML G + + MI +G V+
Sbjct: 475 VWKHMLDRGCAPDTIAYTSMIKGLCVSGMVD 505
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 121/274 (44%), Gaps = 26/274 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR--SLPKKKF----------KTG----TLER 48
P + Y ++ L + G +K+ + V + M L +F K+G L+
Sbjct: 311 PGVMTYGAVVDGLVRCGRVKDAWKVAEEMERNGLAWNEFVYSTVITGFCKSGEIDCALKV 370
Query: 49 WDPRL----EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
W+ + P++V+Y+A++ + A + +++ P+ TYG +++
Sbjct: 371 WEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIHSKCAPNIITYGSIIQGYFK 430
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + + + + +PNA++Y +L+N L G+ +A+ + M RG
Sbjct: 431 IGDTSRALSVWEEMIGAGCVPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIA 490
Query: 164 YYDLARCLCSAGKCEEAL-MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y + + LC +G + L + D + P V+SY L+ L + ++ A + N+M
Sbjct: 491 YTSMIKGLCVSGMVDGGLRLFYDMLASGHADPDVISYNVLLDGLLLAKDLPRAMDLLNRM 550
Query: 223 KN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
+ C P+ VTCNI ++ E G E + F E
Sbjct: 551 LDQGCDPDTVTCNIFLR---EFGAGERKGREFLE 581
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 92/238 (38%), Gaps = 50/238 (21%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y +V+ L G+ D+AV+ V +M G+V + A
Sbjct: 207 PDKFTYSTVVSALADAGRVDDAVALVHEMVADGVVAAEA--------------------- 245
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ +++A L +G+++ AA +F M+ C P T N++V L
Sbjct: 246 ---------------FNPVLRAMLRAGDVKGAAKLFGFMQLKGCVPTTATYNVLVHGLLV 290
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G AM + + M + V+P + T+ ++D R D V +
Sbjct: 291 CGRAGAAMGVMRRMEREG------------VVPGVMTYGAVVDGLVRCGRVKDAWKVAEE 338
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLEN 360
M +GL +N + +I ++G+++ WE + A + P ++ L N
Sbjct: 339 MERNGLAWNEFVYSTVITGFCKSGEIDCALKVWEAMV-ASPVRPNVVLYSAMIGGLAN 395
>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 915
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/415 (21%), Positives = 177/415 (42%), Gaps = 76/415 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKT------GTL 46
P+ + Y ++ + G I++ DV++ M S L K K+ G L
Sbjct: 391 PNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVL 450
Query: 47 ERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
+ + ++ PD+V YN++++ R ++ A+ +L + +G P TY +++ +
Sbjct: 451 NKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKS 510
Query: 106 GKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
+ + F + QK PN + Y L++ + GK DEA +E M + + ++ +
Sbjct: 511 KRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTF 570
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-- 222
L LC+ GK +EA + +K+ K+ +P V + T LI L G+ +A F QM
Sbjct: 571 NALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLS 630
Query: 223 ----------------------------------KNFCSPNLVTCNIMVKAYLEHGLFEE 248
+N SP+L T + ++K Y + G
Sbjct: 631 SGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNF 690
Query: 249 AMKLFQEM----AEDSNH---------INREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
A + + M E S H + +Y K+ P++ + M++ +D
Sbjct: 691 AFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMME-------FDT 743
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
+ + ++M+ H + NAK + ++IL G + + E ++H+ R + I+P L+
Sbjct: 744 VVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELV 798
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 141/312 (45%), Gaps = 28/312 (8%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD Y +++ +RK + AF V ++ +G + + Y ++ + + +
Sbjct: 249 LDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAM 308
Query: 113 EFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F K++ P Y VL+ +L + EA++ V++ME GI + Y L L
Sbjct: 309 DLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSL 368
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
CS K E+A + ++ + P V++Y LI G I++A + M++ SPN
Sbjct: 369 CSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNT 428
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAE------------------DSNHINREY----- 267
T N ++K Y + + +AM + +M E S + + Y
Sbjct: 429 RTYNELIKGYCKSNV-HKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSL 487
Query: 268 -DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+ +GLV PD +T+ +M+D+ KR ++ ++ + G++ N + +I +AG
Sbjct: 488 MNDRGLV-PDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAG 546
Query: 327 KVELLEITWEHL 338
KV+ + E +
Sbjct: 547 KVDEAHLMLEKM 558
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 132/305 (43%), Gaps = 19/305 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P+++ YNA++N +R E A V++ ++ + P+ TY +++ + +
Sbjct: 389 LMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMG 448
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ +++ +P+ + Y L++ R G D A + M RG+V Y + LC
Sbjct: 449 VLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLC 508
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNL 230
+ + EEA D + + P VV YT LI +G + A + +M KN C PN
Sbjct: 509 KSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKN-CLPNS 567
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T N ++ G +EA L ++M K GL P + T ++ +
Sbjct: 568 LTFNALIHGLCADGKLKEATLLEEKMV-----------KIGLQ-PTVSTDTILIHRLLKD 615
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITP 346
+D +++ML G +A + I R G++ +++ E+ D T
Sbjct: 616 GDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTY 675
Query: 347 PALIK 351
+LIK
Sbjct: 676 SSLIK 680
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 93/397 (23%), Positives = 155/397 (39%), Gaps = 46/397 (11%)
Query: 22 HIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQ 81
H+ LF S+ PK +PR + + Y ++L + + G + ++
Sbjct: 92 HVSSLF----SLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNG-YVGVVFKIR 146
Query: 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGK 141
L + S + G + V+ C K N F K Y Y L+N+L R G
Sbjct: 147 LLMIK----SCDSVGDALYVLDLCRKMNKDERFELK----YKLIIGCYNTLLNSLARFGL 198
Query: 142 TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
DE +M + + Y + C G EEA + KI + P +YT
Sbjct: 199 VDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTS 258
Query: 202 LIQACLDSGNIQNAAYIFNQMKNFCSPNLVTC--NIMVKAYLEHGL-----FEEAMKLFQ 254
LI ++ +A +FN+M L C N + +L HGL +EAM LF
Sbjct: 259 LIMGYCQRKDLDSAFKVFNEMP------LKGCRRNEVAYTHLIHGLCVARRIDEAMDLFV 312
Query: 255 EMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKRMLHHGLHFNAK 313
+M +D P + T+ ++ + C +E++ + L LV K M G+ N
Sbjct: 313 KMKDDE------------CFPTVRTYTVLIKSLCGSERKSEALNLV-KEMEETGIKPNIH 359
Query: 314 RHLRMILDASRAGKV----ELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISC 369
+ +I K ELL E + IT ALI +C R +D +
Sbjct: 360 TYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALIN-GYCKRGMIEDAVDVVEL 418
Query: 370 LVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLL 406
+ S +S + + N +K + +++ H L ++L
Sbjct: 419 MESRKLSPNTR-TYNELIKGYCKSNVHKAMGVLNKML 454
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 110/284 (38%), Gaps = 52/284 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + T + G + + D++ MR + + PD+ Y++++
Sbjct: 635 PDAHTYTTFIQTYCREGRLLDAEDMMAKMR---------------ENGVSPDLFTYSSLI 679
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA-------------CGKYNL- 110
Q AF VL++++ G +PS T+ +++ +L C N+
Sbjct: 680 KGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMM 739
Query: 111 ----VYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER-RGIVGSAALY 164
V E K V+ S PNA +Y+ L+ + G A + M+R GI S ++
Sbjct: 740 EFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVF 799
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
L C C K EA +D + V + P + S LI G + +F
Sbjct: 800 NALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQ---- 855
Query: 225 FCSPNLVTCN---------IMVKAYLEHGLFEEAMKLFQEMAED 259
NL+ C I++ + GL E +LF M ++
Sbjct: 856 ----NLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKN 895
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 31/164 (18%), Positives = 71/164 (43%), Gaps = 15/164 (9%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S P+ +Y + + + + G+++ V D M+ + + P +V+N
Sbjct: 755 SVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQR--------------NEGISPSELVFN 800
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QK 120
A+L+ C + K+ A V+ + G P + +++ + G+ F+ + Q
Sbjct: 801 ALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQC 860
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
Y + LA+K++++ + ++G + ME+ G S+ Y
Sbjct: 861 GYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTY 904
>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic [Vitis vinifera]
gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
Length = 1113
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 139/310 (44%), Gaps = 29/310 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y LG++G IKELFD+ + M L R +P+ + +N V+
Sbjct: 821 PDVFTYNLFLDALGKSGKIKELFDLYEEM------------LFRG---CKPNTITHNIVI 865
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
V+ + A + L P+ TYG +++ +L G+ +FF + + +
Sbjct: 866 FGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCM 925
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y +L+N ++G + A M + GI Y + CLC GK ++AL
Sbjct: 926 PNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHY 985
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+++ P +V Y +I S ++ A +F++M+N +P+L T N ++
Sbjct: 986 FEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGI 1045
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G+ EEA K+++E+ KGL P+++T+N ++ + D VYK+
Sbjct: 1046 AGMVEEAGKMYEEL-----------QLKGLE-PNVFTYNALIRGHSMSGNPDRAYAVYKK 1093
Query: 303 MLHHGLHFNA 312
M+ G N
Sbjct: 1094 MMVGGCRPNT 1103
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 82/371 (22%), Positives = 153/371 (41%), Gaps = 42/371 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + LG+AG I E + ++ M D PD+V Y ++
Sbjct: 260 PNIYTFTICIRILGRAGKIDEAYGILKRMD---------------DAGCGPDVVTYTVLI 304
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+A + A + ++K KP TY +++ G + + EF+ +++ Y+
Sbjct: 305 DALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYL 364
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + +L++ L + GK DEA ++ M+++G+ + Y L L + +EAL
Sbjct: 365 PDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALEL 424
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ + + + +Y I SG A F +MK N PN+V CN + + E
Sbjct: 425 FNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAE 484
Query: 243 HGLFEEAMKLFQEM-----AEDS---NHINREYDKKGLVI---------------PDIYT 279
G EEA + F + A D+ N + R Y K G V P++
Sbjct: 485 QGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVI 544
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
N+++D R D+ +++RM L + ++ + G+V+ ++ +
Sbjct: 545 INSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMI 604
Query: 340 RADRITPPALI 350
D PP I
Sbjct: 605 ADD--CPPNTI 613
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 76/361 (21%), Positives = 142/361 (39%), Gaps = 74/361 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + + L + G + E F +D M+ K G + P++ YN ++
Sbjct: 365 PDVVTFTILIDALCKVGKVDEAFGTLDVMK-------KQG--------VAPNLHTYNTLI 409
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV----------------------- 101
+R + + A + ++ G + +A TY L ++
Sbjct: 410 CGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIV 469
Query: 102 --MLAC----------GKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSA 148
++AC G+ EFF ++K + P+A+ Y +L+ + G+ D+A+
Sbjct: 470 PNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKL 529
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+ +ME G + L L A + +EA ++ ++ P VV+Y L+
Sbjct: 530 LSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGK 589
Query: 209 SGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE--------- 258
G +Q A +F M + C PN ++ N ++ ++G + A+K+ M E
Sbjct: 590 EGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLT 649
Query: 259 ---------DSNHINREY----DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
N +N + K ++ PD T T+L + R +D V K +H
Sbjct: 650 YNTVIYGLIKENRVNYAFWLFHQMKKVIYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFVH 709
Query: 306 H 306
H
Sbjct: 710 H 710
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/340 (22%), Positives = 126/340 (37%), Gaps = 64/340 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y ++ V LG+ I+ + ++ M SL L P+I + +
Sbjct: 225 PSLKTYSALMVALGKRRDIETVMGLLQEMESLG---------------LRPNIYTFTICI 269
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
R + + A+ +L+++ G P TY ++++ + GK N E F K++ S+
Sbjct: 270 RILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHK 329
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ G D +ME G + + L LC GK +EA
Sbjct: 330 PDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGT 389
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-------------------- 223
+D + K P + +Y LI L + A +FN M+
Sbjct: 390 LDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGK 449
Query: 224 ----------------NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
N PN+V CN + + E G EEA + F +
Sbjct: 450 SGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGL----------- 498
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
KK + PD T+N ++ R DD + M +G
Sbjct: 499 -KKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENG 537
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/288 (20%), Positives = 127/288 (44%), Gaps = 14/288 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P + YN++++ ++ + E A+ + ++K G P TY L ++ + GK ++
Sbjct: 784 ITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELF 843
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ + ++ + PN + + +++ L + D+A+ D+ + Y L L
Sbjct: 844 DLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGL 903
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
G+ EEA +++ P Y L+ G+++ A +F +M K P+L
Sbjct: 904 LKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDL 963
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+ +IMV G ++A+ F+E+ K + PD+ +N M++
Sbjct: 964 KSYSIMVDCLCMVGKVDDALHYFEEL------------KLSGLDPDLVCYNLMINGLGRS 1011
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
+R ++ ++ M + G+ + + +IL+ AG VE +E L
Sbjct: 1012 QRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEEL 1059
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 135/310 (43%), Gaps = 39/310 (12%)
Query: 27 FDVIDSMRSLPKKKFKTGT------LERWDPRLEPDIVVYNAVLNACVRR--KQWEGAFW 78
F +S+ +P+ T T + R R+E +VV+N + ++R + F
Sbjct: 106 FSFFNSVAEMPRVIHTTETCNYVLEMLRAHRRVEDMVVVFNLMQKQIIKRSINTYLTIFK 165
Query: 79 VL-------------QQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIP 124
VL +++++ G + +Y ++ ++L G + +R+ V + P
Sbjct: 166 VLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKP 225
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ Y L+ L + + + +++ME G+ + + R L AGK +EA +
Sbjct: 226 SLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGIL 285
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEH 243
++ P VV+YT LI A ++G + NA +F +MK P+ VT ++ + +H
Sbjct: 286 KRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDH 345
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD----LELV 299
G + + + EM D +PD+ TF ++DA + D+ L+++
Sbjct: 346 GDLDAIKEFWSEMEADG------------YLPDVVTFTILIDALCKVGKVDEAFGTLDVM 393
Query: 300 YKRMLHHGLH 309
K+ + LH
Sbjct: 394 KKQGVAPNLH 403
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/333 (20%), Positives = 135/333 (40%), Gaps = 32/333 (9%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P V Y ++ LG+ G ++E + M + P+ + +
Sbjct: 571 MKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIA---------------DDCPPNTISF 615
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N +L+ + + + A +L ++ + P TY V+ ++ + N + F +++K
Sbjct: 616 NTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAFWLFHQMKK 675
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVS-AVEDMERRGIVGSAALYYDL-ARCLCSAGKCE 178
P+ + L+ + ++G+ ++A A E + G + + DL L A +
Sbjct: 676 VIYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHVGDHADGSFWEDLMGGILIEAEIGQ 735
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC-SPNLVTCNIM 236
L +C + V L++ G +A +F ++ K+FC +P+L N +
Sbjct: 736 SILFAESLVCNTICEDDSV-LIPLVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSL 794
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ L+ L E A LF +M K PD++T+N LDA + +L
Sbjct: 795 IDGLLKARLTEMAWGLFYKM------------KNAGCTPDVFTYNLFLDALGKSGKIKEL 842
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+Y+ ML G N H +I ++ ++
Sbjct: 843 FDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLD 875
>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/334 (22%), Positives = 149/334 (44%), Gaps = 19/334 (5%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P+T+ ++ L G I + ++ ++ F LE + PD+ +
Sbjct: 126 MGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKD-AVDLFNKMILEN----INPDVYTF 180
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-Q 119
+++ + + + A VL + QG KP TY +M+ + N F + Q
Sbjct: 181 TILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQ 240
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
P+ +Y +L+N + DEA+ +++M + I+ + Y L LC +GK
Sbjct: 241 LGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISY 300
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVK 238
AL +D++ P +V+Y+ ++ A + + NA + QMKN PN+ T I++K
Sbjct: 301 ALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIK 360
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G E+A K+F+++ +++N +YT+ M+ + +D+
Sbjct: 361 GLCQSGKLEDARKVFEDLLVKGHNLN------------VYTYTVMIQGFCDKGLFDEALT 408
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVELLE 332
+ +M +G NAK + +IL + + E+ E
Sbjct: 409 LLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAE 442
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 101/208 (48%), Gaps = 2/208 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PDI Y+ ++N + K + A +L+++ + P+ TY +++ + GK +
Sbjct: 243 VSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYAL 302
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ ++ + PN + Y +++ L + + D A++ + M+ +GI + Y L + L
Sbjct: 303 KLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGL 362
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C +GK E+A + + + V +YT +IQ D G A + ++M+ N C PN
Sbjct: 363 CQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNA 422
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
T I++ + + E A KL EM E
Sbjct: 423 KTYEIIILSLFKKDENEMAEKLLCEMIE 450
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/319 (21%), Positives = 126/319 (39%), Gaps = 35/319 (10%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P + +N +L + V+ K + ++ Q+++ +G KP+ +++ G +
Sbjct: 60 PPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINSFCQLGHIPSAFSV 119
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKT----------DEAVSAVEDMERRGIVGSAAL 163
K+ K Y PN + L+ L GK +AV M I
Sbjct: 120 LTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILENINPDVYT 179
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ L C G+ +EA + + KP VV+Y L+ + A IFN M
Sbjct: 180 FTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMA 239
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS---NHINREYDKKGLV------ 273
SP++ + +I++ + + + +EAM+L +EM N + GL
Sbjct: 240 QLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKIS 299
Query: 274 --------------IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
P+I T++++LDA + D+ + +M + G+ N + +I
Sbjct: 300 YALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILI 359
Query: 320 LDASRAGKVELLEITWEHL 338
++GK+E +E L
Sbjct: 360 KGLCQSGKLEDARKVFEDL 378
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 52/231 (22%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y S+ L ++G I ++D M +R P P+IV Y+++L
Sbjct: 280 PNVVTYSSLIDGLCKSGKISYALKLVDEMH------------DRGQP---PNIVTYSSIL 324
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK---------------YN 109
+A + Q + A +L Q+K QG +P+ TY ++++ + GK +N
Sbjct: 325 DALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHN 384
Query: 110 L-VYEFFRKVQ--------------------KSYIPNALAYKVLVNTLWREGKTDEAVSA 148
L VY + +Q IPNA Y++++ +L+++ + + A
Sbjct: 385 LNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKL 444
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA-NKPLVVS 198
+ +M G AL DL + G + K K A N P++V
Sbjct: 445 LCEMIETNFDGRVALTNDLIASIWVTGSSPGNSLLCKKQGKAAYNTPIMVG 495
>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
Length = 475
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 115/251 (45%), Gaps = 13/251 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++ YNA LN +R+ + A V +++ G P TY ++ K++ +E
Sbjct: 190 PNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHEL 249
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F + + PNA+ Y L++ L +E K DEA M RG Y L C+
Sbjct: 250 FEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCN 309
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
GK E+A+ D++ + P VV+Y L++ +G A +F M C P+ V+
Sbjct: 310 VGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVS 369
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
NIM+ + ++A+++F+ M +D PD+ T+N+++ E+R
Sbjct: 370 HNIMIDGLSKAKRLDDAVEVFERMEQDHG-----------CSPDLVTYNSLIFGLCGEQR 418
Query: 293 WDDLELVYKRM 303
+ V+K +
Sbjct: 419 LSEAMKVFKEI 429
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 116/282 (41%), Gaps = 50/282 (17%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQL-KQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK- 117
YN++LN+ + K+ AF + + ++ P +Y ++++ + + +++
Sbjct: 124 YNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQM 183
Query: 118 VQKSYIPNALAYKVLVNTLWREG-----------------------------------KT 142
+ + +PN Y +N L R+G K
Sbjct: 184 IDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKH 243
Query: 143 DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGL 202
D+A E M RG +A Y L LC K +EA K+ + P V+YT L
Sbjct: 244 DQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTL 303
Query: 203 IQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSN 261
+ + G I+ A +F++M P++V N ++K + G EA +LFQ M
Sbjct: 304 LYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVM----- 358
Query: 262 HINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
++RE PD + N M+D + KR DD V++RM
Sbjct: 359 -VSRECK------PDTVSHNIMIDGLSKAKRLDDAVEVFERM 393
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 18/181 (9%)
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA---LMQMDKIC 188
++ L + G+ D A+S +E M +RG A + L LC A K +EA L M++
Sbjct: 55 VIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTI 114
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLF 246
SY L+ + + + A IF+ M + P++V+ +I++ + +
Sbjct: 115 STRASS-CFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDEL 173
Query: 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306
A KL+++M D N +P++ T+N L+ + R D + VY+ M+
Sbjct: 174 GRAEKLYKQMI-DLN-----------CVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISA 221
Query: 307 G 307
G
Sbjct: 222 G 222
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 2/160 (1%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD V Y +L + E A V ++ +G P Y +++ GK +
Sbjct: 294 DPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQ 353
Query: 114 FFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER-RGIVGSAALYYDLARCL 171
F+ V + P+ +++ ++++ L + + D+AV E ME+ G Y L L
Sbjct: 354 LFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGL 413
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
C + EA+ +I ++ P ++ L++A +G+
Sbjct: 414 CGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAMYAAGH 453
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 66/152 (43%), Gaps = 17/152 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ G I++ +V D M S +PD+V YN +L
Sbjct: 295 PDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGH---------------DPDVVAYNCLL 339
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-- 122
R + A + Q + + KP ++ ++++ + + + E F ++++ +
Sbjct: 340 KGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGC 399
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
P+ + Y L+ L E + EA+ ++++R
Sbjct: 400 SPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDR 431
>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
Length = 717
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 148/327 (45%), Gaps = 28/327 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ +AG + V+ MR K P++V +N+++
Sbjct: 185 PNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAK--------------PNLVTFNSMV 230
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N + + EGA V ++ ++G P +Y ++ G + F ++ Q+ +
Sbjct: 231 NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLV 290
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + L++ + G ++AV+ V M RG+ + + L C G ++AL+
Sbjct: 291 PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLA 350
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
++++ K +P VV Y LI G + A + +M+ P++VT + ++ Y +
Sbjct: 351 VEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCK 410
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + A +L Q+M KKG V+PD T+++++ EKR +D +++
Sbjct: 411 VGNLDSAFQLNQKML-----------KKG-VLPDAITYSSLIRGLCEEKRLNDACELFEN 458
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
ML G+ + + +I + G VE
Sbjct: 459 MLQLGVQPDEFTYTTLIDGHCKEGNVE 485
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/329 (20%), Positives = 145/329 (44%), Gaps = 20/329 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + S+ +AG++++ ++ MR ER L + V + A++
Sbjct: 291 PDVVTFTSLIHATCKAGNLEQAVALVAQMR------------ERG---LRMNEVTFTALI 335
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ ++ + A ++++++ G +PS Y ++ G+ +L E R+++ +
Sbjct: 336 DGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVK 395
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y +++ + G D A + M ++G++ A Y L R LC + +A
Sbjct: 396 PDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACEL 455
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + ++ +P +YT LI GN++ A + ++M + P++VT ++++ +
Sbjct: 456 FENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSK 515
Query: 243 HGLFEEAMK-LFQEMAEDSNHINREYDKKGLVI--PDIYTFNTMLDACAAEKRWDDLELV 299
+EA + LF+ ED N +YD L + + +L + + + V
Sbjct: 516 SARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKV 575
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKV 328
Y+ ML + + +I R G V
Sbjct: 576 YQSMLDRNWKLDGSVYSILIHGHCRGGNV 604
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 109/269 (40%), Gaps = 32/269 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y +I + G++ DS L +K K G L PD + Y++++
Sbjct: 396 PDVVTYSTIISGYCKVGNL-------DSAFQLNQKMLKKGVL--------PDAITYSSLI 440
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
K+ A + + + Q G +P TY +++ G + ++K +
Sbjct: 441 RGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVL 500
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA--------- 174
P+ + Y VL+N L + +T EA + + V Y L C A
Sbjct: 501 PDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALL 560
Query: 175 -GKCEEALM-QMDKICKVA---NKPLVVS-YTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
G C + LM + DK+ + N L S Y+ LI GN++ A QM ++ S
Sbjct: 561 KGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFS 620
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
PN + +V+ E G+ EA Q++
Sbjct: 621 PNSTSTISLVRGLFEEGMVVEADNAIQDL 649
>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 603
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 147/330 (44%), Gaps = 44/330 (13%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFK---TGTL----------- 46
MS PD V Y +I +L +G +KE +V+D R + ++ + T T+
Sbjct: 203 MSVAPDVVTYNTILRSLCDSGKLKEAMEVLD--RQMQRECYPDVITYTILIEATCNDSGV 260
Query: 47 --------ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLV 98
E +PD+V YN ++N + + + A L + G +P+ T+ ++
Sbjct: 261 GQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNII 320
Query: 99 MEVMLACGKY----NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
+ M + G++ L+ + R K P+ + + +L+N L R+ A+ +E M +
Sbjct: 321 LRSMCSTGRWMDAERLLADMLR---KGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPK 377
Query: 155 RGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQN 214
G + ++ Y L C K + A+ ++ + P +V+Y L+ A G
Sbjct: 378 HGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADA 437
Query: 215 AAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV 273
A I NQ+ + CSP L+T N ++ + G E A +L +EM +KGL
Sbjct: 438 AVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMR-----------RKGLK 486
Query: 274 IPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
PDI T++T+L E + D+ ++ M
Sbjct: 487 -PDIITYSTLLRGLGCEGKVDEAIKIFHDM 515
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 107/249 (42%), Gaps = 17/249 (6%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N L VR + E L+++ QG P ++ GK ++
Sbjct: 111 NIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILEN 170
Query: 121 S-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
S +P+ + Y VL+ + G+ D+A+ +ER + Y + R LC +GK +E
Sbjct: 171 SGAVPDVITYNVLIGGYCKSGEIDKALQV---LERMSVAPDVVTYNTILRSLCDSGKLKE 227
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVK 238
A+ +D+ + P V++YT LI+A C DSG Q + K C P++VT N+++
Sbjct: 228 AMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLIN 287
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G +EA+K M P++ T N +L + + RW D E
Sbjct: 288 GICKEGRLDEAIKFLNNMPLYGCQ------------PNVITHNIILRSMCSTGRWMDAER 335
Query: 299 VYKRMLHHG 307
+ ML G
Sbjct: 336 LLADMLRKG 344
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/362 (21%), Positives = 149/362 (41%), Gaps = 40/362 (11%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
+ PD + Y + ++G I + V++ M + PD+V YN
Sbjct: 172 GAVPDVITYNVLIGGYCKSGEIDKALQVLERMS------------------VAPDVVTYN 213
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML---ACGKYNLVYEFFRKV 118
+L + + + A VL + Q+ P TY +++E G+ + + RK
Sbjct: 214 TILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRK- 272
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
K P+ + Y VL+N + +EG+ DEA+ + +M G + + + R +CS G+
Sbjct: 273 -KGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWM 331
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMV 237
+A + + + P VV++ LI + A + +M K+ C PN ++ N ++
Sbjct: 332 DAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLL 391
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ + + A++ + M + PDI T+NT+L A + + D
Sbjct: 392 HGFCQEKKMDRAIEYLEIMVSRGCY------------PDIVTYNTLLTALCKDGKADAAV 439
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPALIKER 353
+ ++ G + +I ++ GK ELLE + D IT L++
Sbjct: 440 EILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGL 499
Query: 354 FC 355
C
Sbjct: 500 GC 501
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 121/284 (42%), Gaps = 23/284 (8%)
Query: 38 KKKFKTGTLERWDPRLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK 89
+K + G LE LE PD++ +++ R + A +++ L+ G
Sbjct: 115 RKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAV 174
Query: 90 PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAV 149
P TY +++ G+ + + ++ S P+ + Y ++ +L GK EA+ +
Sbjct: 175 PDVITYNVLIGGYCKSGEIDKALQVLERM--SVAPDVVTYNTILRSLCDSGKLKEAMEVL 232
Query: 150 EDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS 209
+ +R Y L C+ +A+ +D++ K KP VV+Y LI
Sbjct: 233 DRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKE 292
Query: 210 GNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD 268
G + A N M + C PN++T NI++++ G + +A +L +M
Sbjct: 293 GRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADML----------- 341
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
+KG P + TFN +++ ++ V ++M HG N+
Sbjct: 342 RKGCS-PSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNS 384
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 1/155 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDIV YN +L A + + + A +L QL +G P TY V++ + GK E
Sbjct: 417 PDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAEL 476
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++ K P+ + Y L+ L EGK DEA+ DME I SA Y + LC
Sbjct: 477 LEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCK 536
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
A + A+ + + + KP +YT LI+ D
Sbjct: 537 AQQTSRAIDFLAYMVEKGCKPTKATYTILIEGIAD 571
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 8/190 (4%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ + YN +L+ + K+ + A L+ + +G P TY ++ + GK + E
Sbjct: 382 PNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEI 441
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ K P + Y +++ L + GKT+ A +E+M R+G+ Y L R L
Sbjct: 442 LNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGC 501
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYT----GLIQACLDSGNIQNAAYIFNQMKNFCSPN 229
GK +EA+ + ++ KP V+Y GL +A S I AY+ ++ C P
Sbjct: 502 EGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYM---VEKGCKPT 558
Query: 230 LVTCNIMVKA 239
T I+++
Sbjct: 559 KATYTILIEG 568
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 90/222 (40%), Gaps = 45/222 (20%)
Query: 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM---- 182
A + + L R G+ +E + +E M +G + L R C +GK +A
Sbjct: 108 FASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEI 167
Query: 183 ------------------------QMDKICKVANK----PLVVSYTGLIQACLDSGNIQN 214
++DK +V + P VV+Y ++++ DSG ++
Sbjct: 168 LENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERMSVAPDVVTYNTILRSLCDSGKLKE 227
Query: 215 AAYIFN-QMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV 273
A + + QM+ C P+++T I+++A +AMKL EM KKG
Sbjct: 228 AMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMR-----------KKG-C 275
Query: 274 IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
PD+ T+N +++ E R D+ M +G N H
Sbjct: 276 KPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITH 317
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 15/96 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ LG G + E + M L ++P V YNA++
Sbjct: 487 PDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLS---------------IKPSAVTYNAIM 531
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
+ +Q A L + ++G KP+ TY +++E
Sbjct: 532 LGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIE 567
>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 126/264 (47%), Gaps = 18/264 (6%)
Query: 34 RSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSAT 93
R++ K G LE+ +PD+ YNAV++ + + E A VL ++K++G P
Sbjct: 24 RNIDKATRVMGILEKHG---KPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVV 80
Query: 94 TYGLVMEVMLACGKYNLVYEFFRKVQK--SYIPNALAYKVLVNTLWREGKTDEAVSAVED 151
T+ +++ GK +L + F ++ K + P + Y +L+ EG DEA+ +++
Sbjct: 81 THNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDE 140
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
M RG+ Y + R LC GK + A + + KP V++Y L++A L+ G
Sbjct: 141 MLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGK 200
Query: 212 -IQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270
+ ++ C PN+VT +I++ + G EE++ L + M E K
Sbjct: 201 WDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKE-----------K 249
Query: 271 GLVIPDIYTFNTMLDACAAEKRWD 294
GL PD Y ++ ++ A E + D
Sbjct: 250 GLT-PDAYCYDPLIAAFCREGKLD 272
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 143/305 (46%), Gaps = 18/305 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
LEPD YN + + + + AF ++ L +G KP TY +++ +L GK++
Sbjct: 146 LEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGE 205
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++ ++ + PN + Y +L+++L R+GK +E+V+ V+ M+ +G+ A Y L
Sbjct: 206 KWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAF 265
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C GK + A+ +D + P +V+Y ++ A +GN +A IF ++ C PN+
Sbjct: 266 CREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNV 325
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+ N M+ A G A+ + +M KG + PD+ T+N+++ +
Sbjct: 326 SSYNTMLSALWSSGDRYRALGMISQMLS-----------KG-IDPDVITYNSLISCLCRD 373
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEITWEHLARADRITP 346
D+ + ML N + ++L +A + +E+L E+ + + T
Sbjct: 374 GMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTY 433
Query: 347 PALIK 351
LI+
Sbjct: 434 TLLIE 438
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 140/333 (42%), Gaps = 35/333 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT Y I L + G + F+ + ++ S K PD++ YN +L
Sbjct: 148 PDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCK---------------PDVITYNILL 192
Query: 65 NACVRRKQW-EGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSY 122
A + + +W EG W + ++ +G +P+ TY +++ + GK + + +K
Sbjct: 193 RALLNQGKWDEGEKW-MSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGL 251
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+A Y L+ REGK D A+ ++ M G + Y + LC G + A+
Sbjct: 252 TPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVE 311
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
K+ +V P V SY ++ A SG+ A + +QM P+++T N ++
Sbjct: 312 IFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLC 371
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G+ +EA+ L +M G P+I ++ T+L R DD V
Sbjct: 372 RDGMVDEAIGLLADMLS------------GRFQPNIVSYKTVLLGLCKAHRIDDAIEVLA 419
Query: 302 RMLHHGLHFNAKRHLRMI----LDASRAGKVEL 330
M+ +G N + +I SR +EL
Sbjct: 420 AMIENGCQPNETTYTLLIEGIGFSGSRTQAMEL 452
>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 730
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 140/314 (44%), Gaps = 37/314 (11%)
Query: 3 SYP-DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
YP D AY S+ L + KE + M+ + +P +V YN
Sbjct: 112 GYPLDVYAYTSLISALSRNRKFKEALGFFEQMK---------------EAGPQPSLVTYN 156
Query: 62 AVLNACVRR-KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL---VYEFFRK 117
+++ ++ + WE + +++K QG +P TY + AC +L E F +
Sbjct: 157 VIIDLYGKKGRSWENILELFEEMKAQGIQPDEYTYNTAIT---ACASGSLCEEATELFTQ 213
Query: 118 VQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
++ S P+ + Y L++ + G +EA + +++ME G + + Y +L AG
Sbjct: 214 MKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGL 273
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNI 235
C A D + +P V +YT L+ A +G ++ A I+NQM+ C+PN T N
Sbjct: 274 CNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNA 333
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
++ + ++ F E M +F++M + V PDI T+N++L A + +
Sbjct: 334 LIGMHGKNKNFSEMMVIFEDM------------QACGVEPDIVTWNSLLGAFGKNGMYSE 381
Query: 296 LELVYKRMLHHGLH 309
+ V++ M G
Sbjct: 382 VLKVFRGMKKAGFE 395
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 127/330 (38%), Gaps = 64/330 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ G+AG E +V+ M S G L P+IV YN +L
Sbjct: 221 PDRVTYNALLDVYGKAGWYNEAANVLKEMES-------AGCL--------PNIVTYNELL 265
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-I 123
+A R A + + +G +P TY ++ GK E + +++ S
Sbjct: 266 SAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCT 325
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN+ + L+ + E + EDM+ G+
Sbjct: 326 PNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGV-------------------------- 359
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLE 242
+P +V++ L+ A +G +F MK P+ T NI+++AY
Sbjct: 360 ---------EPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGR 410
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G ++A+ ++ M + PD+ TFNT+L A A E RW+ EL+
Sbjct: 411 CGSSDQALSIYDGMLQAG------------CTPDLATFNTLLAALAREGRWEHAELILDE 458
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLE 332
+ N + M+ + G++E L+
Sbjct: 459 LNRSSYKPNDIAYASMLHAYANGGELEKLK 488
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/381 (22%), Positives = 149/381 (39%), Gaps = 37/381 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGT----LER 48
PD V + S+ G+ G E+ V M+ L + + G+ L
Sbjct: 361 PDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSI 420
Query: 49 WDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+D L+ PD+ +N +L A R +WE A +L +L + KP+ Y ++
Sbjct: 421 YDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSSYKPNDIAYASMLHAYAN 480
Query: 105 CGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ + E + Y+P + K V + DEA A M G + +
Sbjct: 481 GGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRHHGYLSDTST 540
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-M 222
+ + G ++A + +P VV+Y L+ G + + M
Sbjct: 541 FNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECM 600
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+P+LV+ N ++ +Y +HG A ++F EM SN I PD +T+NT
Sbjct: 601 AAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMV--SNGIQ----------PDSFTYNT 648
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA-SRAGKVELLEITWEHLARA 341
+ + + V K M G + + R ++DA + GK E +E + + +
Sbjct: 649 FVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTY-RTLVDAYCKIGKFEEVERILKFIKSS 707
Query: 342 DRITPPALIKERFCNRLENKD 362
D A + R R+++ D
Sbjct: 708 DPNFSKAAYR-RIAARVDDYD 727
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/354 (18%), Positives = 139/354 (39%), Gaps = 50/354 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSL-----------------PKKKFKTGTLE 47
PD Y S+ +AG +++ ++ + MR+ K F +
Sbjct: 291 PDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVI 350
Query: 48 RWDPR---LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
D + +EPDIV +N++L A + + V + +K+ G +P T+ +++E
Sbjct: 351 FEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGR 410
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
CG + + +Q P+ + L+ L REG+ + A ++++ R +
Sbjct: 411 CGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSSYKPNDIA 470
Query: 164 YYDLARCLCSAGKCEEALMQMDKI-------CKVANKPLVVSYT--GLIQACLDSGNIQN 214
Y + + G+ E+ +D + K+ K V+ Y+ L+ D
Sbjct: 471 YASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAED------ 524
Query: 215 AAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI 274
A++ + + S + T N M+ Y + G+ ++A F + + +
Sbjct: 525 -AFLAMRHHGYLS-DTSTFNAMISMYGKKGMMDKATDTFALL------------RSTGLE 570
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
PD+ T+N ++ E + E + + G + + +I S+ G++
Sbjct: 571 PDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQL 624
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 101/263 (38%), Gaps = 51/263 (19%)
Query: 106 GKYNLVYEFFRKVQKS--YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G++N E F +++S + P+ + V++ L RE + + + G
Sbjct: 60 GQWNKALEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTVSRLFKSLREEGYPLDVYA 119
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ------------------- 204
Y L L K +EAL +++ + +P +V+Y +I
Sbjct: 120 YTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWENILELFEEM 179
Query: 205 -----------------ACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLF 246
AC + A +F QMK+ C+P+ VT N ++ Y + G +
Sbjct: 180 KAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWY 239
Query: 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306
EA + +EM + +P+I T+N +L A + + M+
Sbjct: 240 NEAANVLKEM------------ESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSK 287
Query: 307 GLHFNAKRHLRMILDASRAGKVE 329
G+ + + ++ SRAGKVE
Sbjct: 288 GIEPDVFTYTSLLSAYSRAGKVE 310
>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 111/216 (51%), Gaps = 4/216 (1%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK-PSATTYGLVMEVMLACGKYNLVY 112
+P++ ++N ++ RR + AF V+++++ P+ TY +M+ + G+ +
Sbjct: 270 KPNVCIFNILVKYHCRRGDIDSAFEVVKEMRNSKYSYPNVITYSTLMDGLCRNGRLKEAF 329
Query: 113 EFFRKV--QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
E F ++ + +P+ L Y VL+N REGK D A + +E M+ G + Y L
Sbjct: 330 ELFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNVIEFMKNNGCCPNVFNYSALVDG 389
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
LC AGK ++A + ++ KP ++YT LI +G I A + +MK N C +
Sbjct: 390 LCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNGQIDEAIELLTEMKENDCQAD 449
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
VT N+++ G F+EA+ + +++ + ++N+
Sbjct: 450 TVTFNVILGGLCREGRFDEALDMIEKLPQQGVYLNK 485
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 87/186 (46%), Gaps = 15/186 (8%)
Query: 3 SYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNA 62
SYP+ + Y ++ L + G +KE F++ + M S ++ PD + YN
Sbjct: 305 SYPNVITYSTLMDGLCRNGRLKEAFELFEEMVS--------------KDQIVPDPLTYNV 350
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY 122
++N R + + A V++ +K G P+ Y +++ + GK +++ S
Sbjct: 351 LINGFCREGKADRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGKLQDAKGVLAEMKSSG 410
Query: 123 I-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+ P+A+ Y L+N R G+ DEA+ + +M+ + + LC G+ +EAL
Sbjct: 411 LKPDAITYTSLINFFSRNGQIDEAIELLTEMKENDCQADTVTFNVILGGLCREGRFDEAL 470
Query: 182 MQMDKI 187
++K+
Sbjct: 471 DMIEKL 476
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 127/299 (42%), Gaps = 51/299 (17%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
Y +L + K+++ VL Q+ + K + +M+ CG + V++ F +
Sbjct: 168 TYATILQKLAQFKKFQAVDRVLHQMTYEACKFHEGVFINLMKHYSKCGFHEKVFDAFLSI 227
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
Q T+ RE + +A+S+ ++ +V S + DL R L K
Sbjct: 228 Q---------------TIVREKPSPKAISSCLNL----LVDSNQV--DLVRKLLLYAKRS 266
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--FCSPNLVTCNIM 236
+ KP V + L++ G+I +A + +M+N + PN++T + +
Sbjct: 267 -----------LVYKPNVCIFNILVKYHCRRGDIDSAFEVVKEMRNSKYSYPNVITYSTL 315
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ +G +EA +LF+EM K ++PD T+N +++ E + D
Sbjct: 316 MDGLCRNGRLKEAFELFEEMVS-----------KDQIVPDPLTYNVLINGFCREGKADRA 364
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE-----LLEITWEHLARADRITPPALI 350
V + M ++G N + ++ +AGK++ L E+ L + D IT +LI
Sbjct: 365 RNVIEFMKNNGCCPNVFNYSALVDGLCKAGKLQDAKGVLAEMKSSGL-KPDAITYTSLI 422
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 100/227 (44%), Gaps = 21/227 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y ++ L +AG +++ V+ M+S +G L+PD + Y +++
Sbjct: 378 PNVFNYSALVDGLCKAGKLQDAKGVLAEMKS-------SG--------LKPDAITYTSLI 422
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N R Q + A +L ++K+ + T+ +++ + G+++ + K+ Q+
Sbjct: 423 NFFSRNGQIDEAIELLTEMKENDCQADTVTFNVILGGLCREGRFDEALDMIEKLPQQGVY 482
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N +Y++++N+L + + +A + M RG V A +L LC G +A
Sbjct: 483 LNKGSYRIVLNSLTQNCELRKANKLLGLMLSRGFVPHYATSNELLVRLCKEGMANDAATA 542
Query: 184 MDKICKVANKPLVVSYTGLIQ-ACLDSGNIQNAAYIFNQMKNFCSPN 229
+ + + +P S+ LI C D + Y+F + + N
Sbjct: 543 LFDLVDMGFQPQHDSWELLIDLICRD----RKLLYVFELLDELVTSN 585
>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
Length = 1636
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 141/333 (42%), Gaps = 41/333 (12%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S PD Y +I +L ++G + + +++ M S P++V Y+
Sbjct: 943 SCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVS---------------KGCSPNVVTYS 987
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQK 120
++L+ + + + A +LQ++ + G P+ TY +++ G+ + Y + V
Sbjct: 988 SLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDG 1047
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
PN + Y VL++ + GK ++A+ VE M +G V + Y L C + E A
Sbjct: 1048 GCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERA 1107
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
+ + + P VVSY +I + + + QM N C P++VT N ++ A
Sbjct: 1108 CQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDA 1167
Query: 240 YLEHGLFEEAMKLFQEMAED------------------------SNHINREYDKKGLVIP 275
+ + A +LF + E + ++ RE +K P
Sbjct: 1168 MCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSP 1227
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
DI T+NT++D KR D ++ +ML GL
Sbjct: 1228 DIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGL 1260
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 133/277 (48%), Gaps = 15/277 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++ + +++ R A+ +L+++ + G + + +V++ + + K + E
Sbjct: 875 PNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALEL 934
Query: 115 FRKVQKSYI--PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F+++++S P+ Y +V++L + GK D+A VEDM +G + Y L LC
Sbjct: 935 FKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLC 994
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
AGK +EA + ++ + P +V+Y +I G I A ++ +M C PN+V
Sbjct: 995 KAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVV 1054
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T +++ A+ + G E+A+ L + M E KG V P+++T+N++LD +
Sbjct: 1055 TYTVLLDAFCKCGKAEDAIGLVEVMVE-----------KGYV-PNLFTYNSLLDMFCKKD 1102
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+ + M+ G N + +I +A KV
Sbjct: 1103 EVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKV 1139
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 119/256 (46%), Gaps = 14/256 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V Y V+N + Q + A V+ ++ Q+G +P+ TYG +++ G + E
Sbjct: 298 PDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVEL 357
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
RK+ ++ Y PNA+ Y +++ R + A ++ M + G A Y + C
Sbjct: 358 VRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCK 417
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
AGK EA ++++ + +P V + LI A + I +A + C+P++V
Sbjct: 418 AGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVA 477
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+I++ A + EA M + NR Y PD+ T+N+++D +R
Sbjct: 478 YSILIHALCKAKRLPEAESWLDVMVK-----NRCY-------PDVVTYNSVVDGLCKSRR 525
Query: 293 WDDLELVYKRMLHHGL 308
+D L++ RM G+
Sbjct: 526 INDAFLLFDRMRAAGV 541
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 133/300 (44%), Gaps = 17/300 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D V Y+ +++ +R + A+ + ++ ++G K A + ++ + G+ + F
Sbjct: 160 DTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHF 219
Query: 116 RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
R++ K+ P+++ Y ++N L + + D+A+ +E+M G + Y + C A
Sbjct: 220 REMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKAN 279
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCN 234
+ E AL ++++ P VVSYT +I + A + ++M + C PN++T
Sbjct: 280 RVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYG 339
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
+V + G + A++L ++M E R Y P+ T+N ++ +
Sbjct: 340 TLVDGFCRVGDLDGAVELVRKMTE------RGYR------PNAITYNNIMHVFCRRNDME 387
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPALI 350
V + M+ G +A + +I +AGK+ +LLE R D LI
Sbjct: 388 RAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLI 447
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 115/258 (44%), Gaps = 17/258 (6%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M PD VAY + L +A + E +D M R PD+V Y
Sbjct: 469 MDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVK---------------NRCYPDVVTY 513
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N+V++ + ++ AF + +++ G P TY +V+ + ++ ++++
Sbjct: 514 NSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKE 573
Query: 121 SY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ +P+ + Y L+N L + G D+A ++M G + Y L LC K E+
Sbjct: 574 AKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQ 633
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVK 238
A ++ + K + P ++YT LI ++ ++ A + +MK+ C P+ +T +++
Sbjct: 634 AAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLR 693
Query: 239 AYLEHGLFEEAMKLFQEM 256
A + E +L +EM
Sbjct: 694 ALQKTNNLELVEQLLKEM 711
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 103/221 (46%), Gaps = 16/221 (7%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD V Y S+ L ++ I + F + D MR+ G + PD+V Y+ V
Sbjct: 507 YPDVVTYNSVVDGLCKSRRINDAFLLFDRMRA-------AGVM--------PDVVTYSIV 551
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SY 122
+++ + + AF +L+++K+ P TY ++ + G + ++ F+++
Sbjct: 552 IHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGC 611
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN + Y L++ L + K ++A +E M ++ + Y L LC+A + EEA
Sbjct: 612 APNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWR 671
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ ++ P ++Y L++A + N++ + +M+
Sbjct: 672 VLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEME 712
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 118/266 (44%), Gaps = 20/266 (7%)
Query: 98 VMEVMLACGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
++ V++ +Y+ ++ FR +++ + + + Y L++ R GK A ++M R+G
Sbjct: 132 LLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNRKG 191
Query: 157 IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
+ A ++ + R LC AG+C +A++ ++ K P V+Y +I S + +A
Sbjct: 192 LKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTC-PPDSVTYNTMINGLSKSDRLDDAI 250
Query: 217 YIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
+ +M N +PN+ + N ++ + + E A+ L ++M P
Sbjct: 251 RLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRG------------CPP 298
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELL 331
D+ ++ T+++ + D+ V +M+ G N + ++ R G VEL+
Sbjct: 299 DVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELV 358
Query: 332 EITWEHLARADRITPPALIKERFCNR 357
E R + IT I FC R
Sbjct: 359 RKMTERGYRPNAITYNN-IMHVFCRR 383
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/330 (17%), Positives = 131/330 (39%), Gaps = 29/330 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y +I +AG ++E D+++ M + G PD+ + ++
Sbjct: 403 PDAINYSTIISGFCKAGKLREAHDLLEQM-------IRRGC--------RPDVACLSTLI 447
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKSYI 123
+A + + A +L+ P Y +++ + + + V+
Sbjct: 448 DALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCY 507
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y +V+ L + + ++A + M G++ Y + C + A
Sbjct: 508 PDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKM 567
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
++++ + P VV+Y+ LI +G + A +F +M C+PNLVT N ++ +
Sbjct: 568 LERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCK 627
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
E+A ++ + M + S PD T+ +++ R ++ V +
Sbjct: 628 INKVEQAAEMLEIMRKQS------------CTPDSITYTCLINGLCNASRLEEAWRVLRE 675
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLE 332
M G + + ++ + +EL+E
Sbjct: 676 MKDKGCLPDRMTYGTLLRALQKTNNLELVE 705
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 101/259 (38%), Gaps = 48/259 (18%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDI+ YN V++ + K+ + A+ + Q+ G P TY +V+ +
Sbjct: 1227 PDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCK---------- 1276
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
WR DEA + +E M + G A Y L C
Sbjct: 1277 ----------------------WR--FMDEANNVLELMLKNGFDPGAITYGTLIDGFCKT 1312
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTC 233
G ++AL + + + P VV+++ I G ++ A + M + P+ VT
Sbjct: 1313 GNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTY 1372
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N ++K + + L E+A+ LF+ M + PD T+ T++ +K +
Sbjct: 1373 NTLLKGFCDASLTEDAVDLFEVMRQCGCE------------PDNATYTTLVGHLVDKKSY 1420
Query: 294 DD-LELVYKRMLHHGLHFN 311
D L V K M+ G N
Sbjct: 1421 KDLLAEVSKSMVDTGFKLN 1439
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 89/205 (43%), Gaps = 16/205 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ L ++ + + + M S L PD V Y+ V+
Sbjct: 1227 PDIITYNTVIDGLCKSKRVDRAYKLFLQMLS---------------DGLAPDDVTYSIVI 1271
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
++ + + + A VL+ + + G P A TYG +++ G + E + + K
Sbjct: 1272 SSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSY 1331
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + + ++ L + G+ +A +E M R G+V Y L + C A E+A+
Sbjct: 1332 PDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDL 1391
Query: 184 MDKICKVANKPLVVSYTGLIQACLD 208
+ + + +P +YT L+ +D
Sbjct: 1392 FEVMRQCGCEPDNATYTTLVGHLVD 1416
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 71/154 (46%), Gaps = 12/154 (7%)
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NLVTCNIMVKAYLEHGLFE 247
K+ P + ++T LI +G+I A + +M P N++ N+++K +
Sbjct: 870 KLCCSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLD 929
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
A++LF+EM E G PD++T++T++D+ + DD + + M+ G
Sbjct: 930 SALELFKEMEE-----------SGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKG 978
Query: 308 LHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
N + ++ +AGK++ + + R+
Sbjct: 979 CSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRS 1012
>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
Length = 1115
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 138/305 (45%), Gaps = 29/305 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT Y S+ G++G I ELFD+ D M + K P+ + YN V+
Sbjct: 823 PDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCK---------------PNTITYNMVI 867
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ V+ + + A + L P+ T+G +++ +L G+ + +E F V
Sbjct: 868 SNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCR 927
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN+ Y +LVN + G D A + M + GI Y L LC AG+ ++AL
Sbjct: 928 PNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHY 987
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+K+ + P +V+Y +I S + A +F++M+N P+L T N ++
Sbjct: 988 FEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGI 1047
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G+ EEA K+++E+ I + P+++T+N ++ + +YK+
Sbjct: 1048 VGMIEEAGKIYEEL----QFIGLK--------PNVFTYNALIRGYTLSGNSELAYGIYKK 1095
Query: 303 MLHHG 307
M+ G
Sbjct: 1096 MMVGG 1100
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 140/328 (42%), Gaps = 40/328 (12%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P+ Y LG+ G I E + ++ M D PD+V Y
Sbjct: 258 MGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMD---------------DDGCGPDVVTY 302
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ- 119
+++A ++ + A + ++K KP TY +++ CG + V + + +++
Sbjct: 303 TVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEA 362
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
Y P+ + + +LVN L + G+ +EA ++ M ++G++ + Y L L A + ++
Sbjct: 363 DGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDD 422
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVK 238
AL + + +P +Y LI SG+ A F +MK +PN+V CN +
Sbjct: 423 ALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLY 482
Query: 239 AYLEHGLFEEAMKLFQE-----MAEDS---NHINREYDKKGLVI---------------P 275
+ E G EA +F E +A DS N + + Y K G V P
Sbjct: 483 SLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEP 542
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRM 303
D+ N+++D R ++ ++ RM
Sbjct: 543 DVIVINSLIDTLYKAGRVEEAWQMFCRM 570
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 135/292 (46%), Gaps = 21/292 (7%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK---YNLVYEFFR 116
YN +++ ++ + A V +++ +G KPS T+ +M+A GK V
Sbjct: 197 YNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFS---ALMVASGKRRNIKTVMGLLE 253
Query: 117 KVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
+++ + PN Y + + L R+GK DEA ++ M+ G Y L LC+A
Sbjct: 254 EMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTAR 313
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCN 234
K ++A+ K+ ++KP V+Y L+ D G++ I+ +M+ + +P++VT
Sbjct: 314 KLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFT 373
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
I+V A + G EA L M +K V+P+++T+NT++ R D
Sbjct: 374 ILVNALCKAGRINEAFDLLDTM------------RKQGVLPNLHTYNTLISGLLRANRLD 421
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
D ++ M G+ A ++ +I ++G T+E + +A I P
Sbjct: 422 DALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKM-KARGIAP 472
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 120/265 (45%), Gaps = 17/265 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ VA + +L + G + E + + ++S L PD V YN ++
Sbjct: 472 PNIVACNASLYSLAEMGRLGEAKAMFNELKS---------------SGLAPDSVTYNMMM 516
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYI 123
+ Q + A +L ++ + +P +++ + G+ ++ F R + +
Sbjct: 517 KCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLA 576
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y +L+ L +EG+ +AV E M G + + L CLC + + AL
Sbjct: 577 PTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKM 636
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
K+ + +P V+++ +I + I+NA ++F+QMK P+ VT ++ ++
Sbjct: 637 FYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKLLRPDHVTLCTLLPGVIKS 696
Query: 244 GLFEEAMKLFQE-MAEDSNHINREY 267
G E+A ++ ++ + ++I+R +
Sbjct: 697 GQIEDAFRITEDFFYQVGSNIDRSF 721
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/315 (20%), Positives = 131/315 (41%), Gaps = 49/315 (15%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P + VYN +++ + E A+ + +++K G P TY +++ GK N ++
Sbjct: 786 VKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELF 845
Query: 113 EFFRK-VQKSYIPNALAYKV-----------------------------------LVNTL 136
+ + + + + PN + Y + L++ L
Sbjct: 846 DLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGL 905
Query: 137 WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV 196
+ G+ D+A + M G ++A+Y L G + A ++ K +P +
Sbjct: 906 LKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDL 965
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
SYT L+ +G + +A + F ++K P+LV N+M+ EEA+ LF E
Sbjct: 966 KSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHE 1025
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
M NR ++PD+YT+N+++ ++ +Y+ + GL N +
Sbjct: 1026 MQ------NRG------IVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTY 1073
Query: 316 LRMILDASRAGKVEL 330
+I + +G EL
Sbjct: 1074 NALIRGYTLSGNSEL 1088
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 106/246 (43%), Gaps = 15/246 (6%)
Query: 115 FRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F +Q+ I N Y ++ +L+ G +A SA+E M G V +A Y L L
Sbjct: 147 FDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQ 206
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
+G C+EAL ++ KP + +++ L+ A NI+ + +M++ PN+ T
Sbjct: 207 SGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYT 266
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
I ++ G +EA ++ + M +D PD+ T+ ++DA ++
Sbjct: 267 YTICIRVLGRDGKIDEAYRIMKRMDDDGCG------------PDVVTYTVLIDALCTARK 314
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKE 352
DD ++ +M + ++ ++ S G ++ +E W + AD P +
Sbjct: 315 LDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEM-EADGYAPDVVTFT 373
Query: 353 RFCNRL 358
N L
Sbjct: 374 ILVNAL 379
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/353 (18%), Positives = 140/353 (39%), Gaps = 36/353 (10%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M+ P V Y + LG+ G I++ + +SM P+ + +
Sbjct: 573 MNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNG---------------HGCSPNTITF 617
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N +L+ + + + A + ++ +P T+ ++ + + F +++K
Sbjct: 618 NTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKK 677
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS---AALYYDLARCLCSAGKC 177
P+ + L+ + + G+ ++A ED + VGS + + D+ + +
Sbjct: 678 LLRPDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQ--VGSNIDRSFWEDVMGGILTEAGT 735
Query: 178 EEALMQMDK-ICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--FCSPNLVTCN 234
E+A++ ++ +C+ K V +I+ A +F + P L N
Sbjct: 736 EKAILFGERLVCRAICKDDSV-LIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYN 794
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
+++ +LE E A LF+EM K PD +T+N+++DA + +
Sbjct: 795 LLIDGFLEVHNVEVAWNLFEEM------------KSAGCAPDTFTYNSLIDAHGKSGKIN 842
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPP 347
+L +Y ML G N + +I + ++ +++ + +L D P
Sbjct: 843 ELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTP 895
>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
Length = 353
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 131/276 (47%), Gaps = 14/276 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D PDIV YN V+N + + + A L+ L G +P+ +Y +V++ +
Sbjct: 17 EMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAE 76
Query: 107 KYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
++ E ++ QK PN + + +L++ L R+G + A+ +E + + G ++ Y
Sbjct: 77 RWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYN 136
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN- 224
L C K ++A+ +D + P +VSY L+ A SG + A + +Q+K+
Sbjct: 137 PLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDK 196
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
C+P L++ N ++ + G +EA++L EM KGL PDI T++T+
Sbjct: 197 GCAPVLISYNTVIDGLTKAGKTKEALELLNEMV-----------SKGLQ-PDIITYSTIA 244
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMIL 320
E R +D + ++ G+ N + +IL
Sbjct: 245 AGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIIL 280
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 96/204 (47%), Gaps = 2/204 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ + YN +L+A ++K+ + A L + +G P +Y ++ + G+ ++ E
Sbjct: 130 PNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVEL 189
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++ K P ++Y +++ L + GKT EA+ + +M +G+ Y +A LC
Sbjct: 190 LHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCR 249
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+ E+A+ K+ + +P V Y +I +A +F M N C PN T
Sbjct: 250 EDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNEST 309
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEM 256
I+++ GL +EA L E+
Sbjct: 310 YTILIEGLAYEGLIKEARDLLDEL 333
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 69/157 (43%), Gaps = 20/157 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P ++Y ++ L +AG KE ++++ M S L+PDI+ Y+ +
Sbjct: 200 PVLISYNTVIDGLTKAGKTKEALELLNEMVS---------------KGLQPDIITYSTIA 244
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK---YNLVYEFFRKVQKS 121
R + E A +++ G +P+ Y + ++ C + ++ + F +
Sbjct: 245 AGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAI--ILGLCKRRETHSAIDLFAYMIGNG 302
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+PN Y +L+ L EG EA ++++ RG+V
Sbjct: 303 CMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVV 339
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 92/208 (44%), Gaps = 15/208 (7%)
Query: 144 EAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLI 203
+A+ +++M +G Y + +C G+ ++A+ + + +P VSY ++
Sbjct: 10 QAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVL 69
Query: 204 QACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNH 262
+ + ++A + +M + C PN+VT N+++ GL E A+++ +++
Sbjct: 70 KGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIP----- 124
Query: 263 INREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA 322
K G P+ ++N +L A +K+ D M+ G + + + ++
Sbjct: 125 ------KYGCT-PNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTAL 177
Query: 323 SRAGKVELLEITWEHLARADRITPPALI 350
R+G+V++ L D+ P LI
Sbjct: 178 CRSGEVDVAVELLHQL--KDKGCAPVLI 203
>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g31850, chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/350 (23%), Positives = 145/350 (41%), Gaps = 40/350 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + LG+AG I E +++ M D PD+V Y ++
Sbjct: 260 PNVYTFTICIRVLGRAGKIDEAYEIFRRMD---------------DEGCGPDLVTYTVLI 304
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+A Q E A + ++K G KP Y +++ G + EF+ +++ Y+
Sbjct: 305 DALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYM 364
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + +LV+ L + DEA + + M ++GI+ + Y L L AG+ E+AL
Sbjct: 365 PDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKL 424
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+D + V +P +Y I SG A F +MK PN+V CN + + E
Sbjct: 425 LDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAE 484
Query: 243 HGLFEEAMKLFQEMAEDS--------NHINREYDKKGLVI---------------PDIYT 279
G EA +F + E+ N + + Y K G V PD+
Sbjct: 485 MGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIV 544
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
N+++D+ R D+ ++ RM L + ++ + G+V+
Sbjct: 545 VNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQ 594
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 134/309 (43%), Gaps = 29/309 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + + G++G I ELF++ M S R +PD + YN V+
Sbjct: 821 PDAFTFNMLLAVHGKSGKITELFELYKEMIS---------------RRCKPDAITYNIVI 865
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
++ + + A L +P+ TYG +++ + G+ F ++
Sbjct: 866 SSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCK 925
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + +L+N + G T+ A + M GI Y L CLC AG+ +EAL
Sbjct: 926 PNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYY 985
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+++ P ++Y +I S ++ A ++N+M+N P+L T N ++
Sbjct: 986 FNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGL 1045
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G+ E+A ++++E+ GL PD++T+N ++ + + + VYK
Sbjct: 1046 AGMVEQAKRMYEEL-----------QLAGLE-PDVFTYNALIRGYSLSENPEHAYTVYKN 1093
Query: 303 MLHHGLHFN 311
M+ G + N
Sbjct: 1094 MMVDGCNPN 1102
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 134/305 (43%), Gaps = 18/305 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P + YN ++ + E A+ + + +K G P A T+ +++ V GK ++
Sbjct: 784 ISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELF 843
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E +++ + + P+A+ Y +++++L + D+A+ D+ + Y L L
Sbjct: 844 ELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGL 903
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
G+ EEA+ +++ KP + LI G+ + A +F +M N P+L
Sbjct: 904 AKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDL 963
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+ I+V G +EA+ F E+ K + PD +N +++
Sbjct: 964 KSYTILVDCLCLAGRVDEALYYFNEL------------KSTGLDPDFIAYNRIINGLGKS 1011
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA----DRITP 346
+R ++ +Y M + G+ + + ++L+ AG VE + +E L A D T
Sbjct: 1012 QRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTY 1071
Query: 347 PALIK 351
ALI+
Sbjct: 1072 NALIR 1076
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/363 (21%), Positives = 146/363 (40%), Gaps = 57/363 (15%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSM------------------------RSL 36
M P V Y ++ LG+ G +++ ++ +SM L
Sbjct: 571 MKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVEL 630
Query: 37 PKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG 96
K F T+ +PD++ YN V+ ++ + AFW QLK+ P T
Sbjct: 631 ALKMFSKMTVMDC----KPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKS-MHPDHVTIC 685
Query: 97 LVMEVMLACGKY--------NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSA 148
++ ++ CG+ + +Y+ +V +S+ ++ L+ E + D+A+
Sbjct: 686 TLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSF------WEDLMGGTLVEAEMDKAIIF 739
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC-KVANKPLVVSYTGLIQACL 207
E++ GI + L R LC + A DK K+ P + SY LI L
Sbjct: 740 AEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELL 799
Query: 208 DSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
+ + A +F MKN C+P+ T N+++ + + G E +L++EM I+R
Sbjct: 800 EVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEM------ISRR 853
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
PD T+N ++ + A D + ++ + + +I ++ G
Sbjct: 854 CK------PDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVG 907
Query: 327 KVE 329
++E
Sbjct: 908 RLE 910
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 144/343 (41%), Gaps = 30/343 (8%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D Y +I L G ++++ V++ MR K G + + YN +++
Sbjct: 156 DLDTYLTIFKALSIRGGLRQMTTVLNKMR-------KAGFV--------LNAYSYNGLIH 200
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
++ A V +++ +G KPS TY +M + +V ++++ + P
Sbjct: 201 LLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRP 260
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N + + + L R GK DEA M+ G Y L LC+AG+ E A
Sbjct: 261 NVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELF 320
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEH 243
K+ +KP V Y L+ D G++ ++QM+ + P++VT I+V +
Sbjct: 321 VKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKA 380
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
F+EA F M +K ++P+++T+NT++ R +D + M
Sbjct: 381 RDFDEAFATFDVM------------RKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTM 428
Query: 304 LHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
G+ A ++ I ++G+ T+E + +A I P
Sbjct: 429 ESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKM-KAKGIVP 470
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/265 (20%), Positives = 119/265 (44%), Gaps = 17/265 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ VA + +L + G ++E + + +R + L PD V YN ++
Sbjct: 470 PNIVACNASLYSLAEMGRLREAKTMFNGLR---------------ENGLAPDSVTYNMMM 514
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ Q + A +L ++ + G +P +++ + G+ + ++ F +++ +
Sbjct: 515 KCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLS 574
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y L++ L +EG+ +A+ E M + + + L C C + E AL
Sbjct: 575 PTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKM 634
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
K+ + KP V++Y +I + + +A + F+Q+K P+ VT ++ ++
Sbjct: 635 FSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKSMHPDHVTICTLLPGLVKC 694
Query: 244 GLFEEAMKLFQE-MAEDSNHINREY 267
G +A+ + ++ M + +NR +
Sbjct: 695 GQIGDAISIARDFMYQVRFRVNRSF 719
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 107/279 (38%), Gaps = 63/279 (22%)
Query: 111 VYEFFRKVQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
V+EF +QK I L Y + L G + + + M + G V +A Y L
Sbjct: 144 VFEF---MQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIH 200
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA------------------------ 205
L +G C EAL ++ KP + +Y+ L+ A
Sbjct: 201 LLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRP 260
Query: 206 -------CL----DSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253
C+ +G I A IF +M + C P+LVT +++ A G E A +LF
Sbjct: 261 NVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELF 320
Query: 254 QEMAEDSNHINR--------EYDKKGLV---------------IPDIYTFNTMLDACAAE 290
+M + + ++ +++ G + +PD+ TF ++D
Sbjct: 321 VKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKA 380
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ +D+ + M G+ N + +I RAG++E
Sbjct: 381 RDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIE 419
>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 584
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 17/298 (5%)
Query: 34 RSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSAT 93
R++ K LER+ +PD+ YNA+++ ++ Q E A VL ++K +G P
Sbjct: 118 RNIGKATRVMEILERYG---KPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVV 174
Query: 94 TYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDM 152
TY +++ + GK +L E F ++ K P + Y +L+ +G D A+ +++M
Sbjct: 175 TYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEM 234
Query: 153 ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI 212
+G+ Y + R +C ++A + + KP +++Y L++ L G
Sbjct: 235 LSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKW 294
Query: 213 QNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKG 271
+ ++M + C PN+VT +I++ G EEA+ L + M E KG
Sbjct: 295 SEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKE-----------KG 343
Query: 272 LVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
L PD Y ++ ++ E R D + M+ G + + ++ R GK +
Sbjct: 344 LK-PDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKAD 400
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 81/322 (25%), Positives = 138/322 (42%), Gaps = 56/322 (17%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN--- 109
LEPD + YNA++ + + AF +L+ L +G KP TY +++ +L+ GK++
Sbjct: 239 LEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGE 298
Query: 110 -LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY---- 164
L+ E K PN + + +L+ TL R+GK +EAV+ + M+ +G+ A Y
Sbjct: 299 KLISEMISIGCK---PNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLI 355
Query: 165 --------YDLAR----------C-------------LCSAGKCEEALMQMDKICKVANK 193
DLA C LC GK ++AL +K+ +V
Sbjct: 356 AGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCP 415
Query: 194 PLVVSYTGLIQACLDSGNIQNA-AYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKL 252
P V SY L A SG+ A I + P+ +T N ++ G+ +EA++L
Sbjct: 416 PNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIEL 475
Query: 253 FQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
+M + G P++ ++N +L R +D V M G N
Sbjct: 476 LVDM------------QSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNE 523
Query: 313 KRHLRMILDASRAG-KVELLEI 333
++ +I +G + E +E+
Sbjct: 524 TTYILLIEGIGFSGLRAEAMEL 545
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/352 (21%), Positives = 141/352 (40%), Gaps = 46/352 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD AY ++ +A ++ V+D M+S G L PD+V YN ++
Sbjct: 136 PDVFAYNALISGFIKANQLENANRVLDRMKS-------RGFL--------PDVVTYNIMI 180
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ R + + A + ++L + +P+ TY +++E + G ++ + + + K
Sbjct: 181 GSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLE 240
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ L Y ++ + +E D+A + + RG Y L R L S GK E
Sbjct: 241 PDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKL 300
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ ++ + KP VV+++ LI G ++ A + MK P+ + ++ +
Sbjct: 301 ISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCR 360
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + A + + M D +PDI +NT++ + D V+++
Sbjct: 361 EGRLDLATEFLEYMISDG------------CLPDIVNYNTIMAGLCRTGKADQALEVFEK 408
Query: 303 MLHHGLHFNAK----------------RHLRMILDASRAGKVELLEITWEHL 338
+ G N R L MIL G ++ EIT+ L
Sbjct: 409 LDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQG-IDPDEITYNSL 459
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 117/271 (43%), Gaps = 19/271 (7%)
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA---CGKYNLVYEFFRKVQ 119
+LN R ++ + + L+ + +G P +++ GK V E +
Sbjct: 75 LLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYG 134
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K P+ AY L++ + + + A ++ M+ RG + Y + CS GK +
Sbjct: 135 K---PDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDL 191
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
AL +++ K +P V++YT LI+A + G I A + ++M P+ +T N +++
Sbjct: 192 ALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIR 251
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ + ++A +L + ++ PDI T+N +L + +W + E
Sbjct: 252 GMCKEMMVDKAFELLRSLSSRGCK------------PDIITYNILLRTLLSRGKWSEGEK 299
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ M+ G N H +I R GKVE
Sbjct: 300 LISEMISIGCKPNVVTHSILIGTLCRDGKVE 330
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 114/272 (41%), Gaps = 24/272 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V + + TL + G ++E +++ SM+ + L+PD Y+ ++
Sbjct: 311 PNVVTHSILIGTLCRDGKVEEAVNLLRSMK---------------EKGLKPDAYCYDPLI 355
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
R + + A L+ + G P Y +M + GK + E F K+ +
Sbjct: 356 AGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCP 415
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN +Y L + LW G A+ + + +GI Y L CLC G +EA+
Sbjct: 416 PNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIEL 475
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + +P VVSY ++ +A + M + C PN T ++++
Sbjct: 476 LVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIGF 535
Query: 243 HGLFEEAMKL------FQEMAEDS-NHINREY 267
GL EAM+L ++EDS N +N+ +
Sbjct: 536 SGLRAEAMELANSLHGMNAISEDSFNRLNKTF 567
>gi|255661008|gb|ACU25673.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 369
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 138/286 (48%), Gaps = 21/286 (7%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY- 108
D ++ PD VVYNA+LN R + + F + + + ++G + S ++ ++M + G+
Sbjct: 18 DSKVSPDAVVYNAMLNGFYRAGRIKDCFELWEMMGREGNR-SVASFNIMMRGLFDNGRVD 76
Query: 109 --NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
N ++E +K Y+ +++ Y +LV+ + G ++++ +E ER+G V A Y
Sbjct: 77 EVNSIWELMKK--GGYVEDSITYGILVHGFCKNGYINKSLRVLETAERKGGVLDAFAYSA 134
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NF 225
+ LC K E+A+ ++ + K KP Y LI + + ++A +F +M
Sbjct: 135 MINGLCKETKLEKAISVLNGMIKSGCKPNTHVYNALINGLIGASKSEDAIRVFREMGITH 194
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
CSP +VT NI++ + F EA L +EM E KGL P + T++ ++
Sbjct: 195 CSPTIVTYNILINGLCKSERFGEAYDLVKEMLE-----------KGLT-PSVITYSLLMK 242
Query: 286 A-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
C K L+L + ++ +G + + H +I GK +L
Sbjct: 243 GLCLGHKIEMALQL-WNQVTKNGFKPDVQMHNTLIHGLCSVGKTQL 287
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 127/292 (43%), Gaps = 29/292 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D++ Y + + G+I + S+R L + K G L D Y+A++N
Sbjct: 93 DSITYGILVHGFCKNGYINK------SLRVLETAERKGGVL---------DAFAYSAMIN 137
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ + E A VL + + G KP+ Y ++ ++ K FR++ ++ P
Sbjct: 138 GLCKETKLEKAISVLNGMIKSGCKPNTHVYNALINGLIGASKSEDAIRVFREMGITHCSP 197
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ Y +L+N L + + EA V++M +G+ S Y L + LC K E AL
Sbjct: 198 TIVTYNILINGLCKSERFGEAYDLVKEMLEKGLTPSVITYSLLMKGLCLGHKIEMALQLW 257
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
+++ K KP V + LI G Q A ++ M + C+PNLVT N +++ + +
Sbjct: 258 NQVTKNGFKPDVQMHNTLIHGLCSVGKTQLALSLYLDMNYWNCAPNLVTQNTLMEGFYKD 317
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
G A+ ++ + ++ + PDI ++N L + R D
Sbjct: 318 GDMRNALVIWARILKNE------------LQPDIISYNITLKGLCSCNRISD 357
>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 999
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 136/310 (43%), Gaps = 36/310 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL-------ERWDPRLE- 54
P Y + L + +++ +V+D M + F GTL R++ +E
Sbjct: 449 PSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIEL 508
Query: 55 ----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
PD+ YN ++ R K+ E A +L + ++G KP+A TYG + +
Sbjct: 509 LKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSK 568
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ + +F+ + S I PN + Y +L+ G T EA+S + M +G++
Sbjct: 569 SGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRA 628
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y + L GK +EA+ K K P V Y LI G+I+ A+ ++++M
Sbjct: 629 YSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEML 688
Query: 223 KNFCSPNLVTCNIMVK--AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
N +PN+V N ++ Y + G EA KLF EM KG + PD Y +
Sbjct: 689 HNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMIS-----------KG-ISPDGYIY 736
Query: 281 NTMLDACAAE 290
++D C E
Sbjct: 737 CILIDGCGKE 746
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/325 (19%), Positives = 135/325 (41%), Gaps = 49/325 (15%)
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L + +P++ YNA + + + A V + + ++G P TY L+++
Sbjct: 264 VLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCK 323
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
+ F + S + PN Y L++ +EG +EA+ ++M RG+ +
Sbjct: 324 QKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVT 383
Query: 164 YYDLARCLCSAGKCEEALM----------------------------QMDKICKVANK-- 193
Y + + AG+ +A+ M K C++ +
Sbjct: 384 YNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMK 443
Query: 194 -----PLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFE 247
P +Y+ LI S ++Q A + +QM +N PN+ ++KAY++ +E
Sbjct: 444 ARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYE 503
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
A++L + M + V+PD++ +N ++ K+ ++ +++ M G
Sbjct: 504 MAIELLKIMIANG------------VLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKG 551
Query: 308 LHFNAKRHLRMILDASRAGKVELLE 332
+ NA + I S++G++++ E
Sbjct: 552 IKPNAHTYGAFINLYSKSGEIQVAE 576
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 93/234 (39%), Gaps = 15/234 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFW-VLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
P ++ N ++ ++ G FW V + + P TY V++ G
Sbjct: 205 PTLICCNNLMRDLLKANMM-GLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKM 263
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++K PN Y + L + G DEA+ + M +G+ Y L C
Sbjct: 264 VLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCK 323
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+ +EA + + + P +YT LI + GNI+ A I ++M N+VT
Sbjct: 324 QKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVT 383
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
N M+ + G +AM LF EM + PD +T+N ++D
Sbjct: 384 YNAMIGGIAKAGEMAKAMSLFNEMLMAG------------IEPDTWTYNLLIDG 425
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 117/285 (41%), Gaps = 43/285 (15%)
Query: 5 PDTVAYRSIAVTLG--QAGHIKELFDVIDSMRS------------LPKKKFKTGTLERW- 49
P+ V Y ++ G ++G++ E F + D M S L K G LE+
Sbjct: 694 PNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKAL 753
Query: 50 ------DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
+ + +N+++++ + + A + + + P+ TY ++++
Sbjct: 754 SLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILID--- 810
Query: 104 ACGKYNLVYE----FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
A GK ++ E F ++ IPN L Y L+ + + G + +S +DME RGI
Sbjct: 811 AYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIAC 870
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS-------YTGLIQACLDSGNI 212
A Y +A C GK EAL K+ NK LV + LI I
Sbjct: 871 DAIAYGVMASAYCKEGKSLEAL-------KLLNKSLVEGIKLEDDVFDALIFHLCKEKQI 923
Query: 213 QNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+ ++M K S + TCN ++ + + G +EA K+ M
Sbjct: 924 STVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVM 968
>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
Length = 552
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 148/327 (45%), Gaps = 28/327 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ +AG + V+ MR K P++V +N+++
Sbjct: 43 PNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAK--------------PNLVTFNSMV 88
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N + + EGA V ++ ++G P +Y ++ G + F ++ Q+ +
Sbjct: 89 NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLV 148
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + L++ + G ++AV+ V M RG+ + + L C G ++AL+
Sbjct: 149 PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLA 208
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
++++ K +P VV Y LI G + A + +M+ P++VT + ++ Y +
Sbjct: 209 VEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCK 268
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + A +L Q+M KKG V+PD T+++++ EKR +D +++
Sbjct: 269 VGNLDSAFQLNQKML-----------KKG-VLPDAITYSSLIRGLCEEKRLNDACELFEN 316
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
ML G+ + + +I + G VE
Sbjct: 317 MLQLGVQPDEFTYTTLIDGHCKEGNVE 343
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 14/196 (7%)
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
V+ PN Y +LV L G+ +EAV V DM G +A Y L C AG+
Sbjct: 2 VRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGEL 61
Query: 178 EEALMQMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNI 235
+ A + + + N KP +V++ ++ +G ++ A +F++M + +P++V+ N
Sbjct: 62 DGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNT 121
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
++ Y + G E++ +F EM + +GLV PD+ TF +++ A +
Sbjct: 122 LLSGYCKVGCLHESLAVFSEMTQ-----------RGLV-PDVVTFTSLIHATCKAGNLEQ 169
Query: 296 LELVYKRMLHHGLHFN 311
+ +M GL N
Sbjct: 170 AVALVAQMRERGLRMN 185
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/329 (20%), Positives = 145/329 (44%), Gaps = 20/329 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + S+ +AG++++ ++ MR ER L + V + A++
Sbjct: 149 PDVVTFTSLIHATCKAGNLEQAVALVAQMR------------ERG---LRMNEVTFTALI 193
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ ++ + A ++++++ G +PS Y ++ G+ +L E R+++ +
Sbjct: 194 DGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVK 253
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y +++ + G D A + M ++G++ A Y L R LC + +A
Sbjct: 254 PDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACEL 313
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + ++ +P +YT LI GN++ A + ++M + P++VT ++++ +
Sbjct: 314 FENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSK 373
Query: 243 HGLFEEAMK-LFQEMAEDSNHINREYDKKGLVI--PDIYTFNTMLDACAAEKRWDDLELV 299
+EA + LF+ ED N +YD L + + +L + + + V
Sbjct: 374 SARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKV 433
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKV 328
Y+ ML + + +I R G V
Sbjct: 434 YQSMLDRNWKLDGSVYSILIHGHCRGGNV 462
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 92/212 (43%), Gaps = 19/212 (8%)
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
M R G+ + Y L R LC+ G+ EEA+ + + P V+Y L+ A +G
Sbjct: 1 MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60
Query: 212 IQNAAYIFNQMK--NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
+ A + + M+ PNLVT N MV + G E A K+F EM +
Sbjct: 61 LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMV-----------R 109
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+GL PD+ ++NT+L + V+ M GL + +I +AG +E
Sbjct: 110 EGLA-PDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLE 168
Query: 330 ----LLEITWEHLARADRITPPALIKERFCNR 357
L+ E R + +T ALI + FC +
Sbjct: 169 QAVALVAQMRERGLRMNEVTFTALI-DGFCKK 199
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 109/269 (40%), Gaps = 32/269 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y +I + G++ DS L +K K G L PD + Y++++
Sbjct: 254 PDVVTYSTIISGYCKVGNL-------DSAFQLNQKMLKKGVL--------PDAITYSSLI 298
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
K+ A + + + Q G +P TY +++ G + ++K +
Sbjct: 299 RGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVL 358
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA--------- 174
P+ + Y VL+N L + +T EA + + V Y L C A
Sbjct: 359 PDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALL 418
Query: 175 -GKCEEALM-QMDKICKVA---NKPLVVS-YTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
G C + LM + DK+ + N L S Y+ LI GN++ A QM ++ S
Sbjct: 419 KGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFS 478
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
PN + +V+ E G+ EA Q++
Sbjct: 479 PNSTSTISLVRGLFEEGMVVEADNAIQDL 507
>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 727
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 119/237 (50%), Gaps = 14/237 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+EPD V YN +L A + +Q A +L ++K +G P+ TY +++ + G + Y
Sbjct: 367 IEPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPTIQTYITIIDGFMKTGDVRMAY 426
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +++ + PNA Y V+++ L + G+ D A S +++ME G+ + Y L +
Sbjct: 427 KTVSEMKLAGCRPNATTYNVIMHNLVQLGQIDRAASVIDEMELAGVQPNFRSYTTLMQGF 486
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NL 230
S G+ A + ++ ++ KP ++SY L++AC +G +QNA + +M P N
Sbjct: 487 ASIGEIGLAFKCLKRVNEITQKPPIISYASLLKACCKAGRMQNAIAVTEEMAFAGVPMNN 546
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
N ++ + + G EA + Q+M ++ PDI+++ + ++AC
Sbjct: 547 YIFNTLLDGWAQRGDMWEAYGIMQKMRQEG------------FTPDIHSYTSFVNAC 591
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 132/306 (43%), Gaps = 33/306 (10%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ YN +++ V+ Q + A V+ +++ G +P+ +Y +M+ + G+ L ++
Sbjct: 439 PNATTYNVIMHNLVQLGQIDRAASVIDEMELAGVQPNFRSYTTLMQGFASIGEIGLAFKC 498
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++V + + P ++Y L+ + G+ A++ E+M G+ + ++ L
Sbjct: 499 LKRVNEITQKPPIISYASLLKACCKAGRMQNAIAVTEEMAFAGVPMNNYIFNTLLDGWAQ 558
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
G EA M K+ + P + SYT + AC +G++Q A +MK PNL T
Sbjct: 559 RGDMWEAYGIMQKMRQEGFTPDIHSYTSFVNACCKAGDMQKATETIEEMKQQDLQPNLQT 618
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD---IYTFNTML---DA 286
I++ + E+A+ + EM K +IPD Y T L A
Sbjct: 619 YTILIHGWTSVSHPEKALICYDEM------------KAAGLIPDKPLYYCIVTSLLSKAA 666
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFN---AKRHLRMILDASRAGKVELLEITWEHLARA-D 342
A E + + V M+ G+ + AK+ R +++ R L RA +
Sbjct: 667 IARETVRNGVLQVTSEMVDQGMCIDLATAKQWQRSLMNVERRPG---------ELTRAVE 717
Query: 343 RITPPA 348
RI PP
Sbjct: 718 RIFPPG 723
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 126/285 (44%), Gaps = 21/285 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++ + YN ++ A + + +GA +++++ +G P+A T+ ++ + G
Sbjct: 154 IDSSVHAYNNLIRAYIMAQNLQGAVSCVEEMEIEGIFPNAATFSAIISGYGSSGNVEAAE 213
Query: 113 EFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL---- 167
++F R V +++ N Y +++ + G + A + V DME +G+ + LY L
Sbjct: 214 KWFQRSVSENWNHNVAIYSSIIHAYCKAGNMERAEALVADMEEQGLEATLGLYNILMDGY 273
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFC 226
ARC A +C ++ P V+Y LI G + A +MK
Sbjct: 274 ARCHIEA-QCLNVFHKLKARIDTGLSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQGI 332
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+ N T +++V Y++ G F A +F++M+E + PD T+N +L A
Sbjct: 333 TLNRNTYSMLVDGYVQLGDFANAFSVFEDMSEAG------------IEPDWVTYNILLKA 380
Query: 287 -CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
C + + ++L+ RM G + ++ +I + G V +
Sbjct: 381 FCKSRQMTRAIQLL-GRMKTRGCSPTIQTYITIIDGFMKTGDVRM 424
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/353 (19%), Positives = 146/353 (41%), Gaps = 37/353 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ + +I G +G+++ +K F+ E W+ ++ +Y+++
Sbjct: 190 FPNAATFSAIISGYGSSGNVEA-----------AEKWFQRSVSENWNH----NVAIYSSI 234
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK----YNLVYEFFRKVQ 119
++A + E A ++ +++QG + + Y ++M+ C N+ ++ ++
Sbjct: 235 IHAYCKAGNMERAEALVADMEEQGLEATLGLYNILMDGYARCHIEAQCLNVFHKLKARID 294
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
P A+ Y L+N + GK +A+ ++M+ +GI + Y L G
Sbjct: 295 TGLSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDGYVQLGDFAN 354
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVK 238
A + + + +P V+Y L++A S + A + +MK CSP + T ++
Sbjct: 355 AFSVFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPTIQTYITIID 414
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+++ G A K EM K P+ T+N ++ + D
Sbjct: 415 GFMKTGDVRMAYKTVSEM------------KLAGCRPNATTYNVIMHNLVQLGQIDRAAS 462
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRIT--PPAL 349
V M G+ N + + ++ + G++ L ++ L R + IT PP +
Sbjct: 463 VIDEMELAGVQPNFRSYTTLMQGFASIGEIGL---AFKCLKRVNEITQKPPII 512
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 42/220 (19%), Positives = 84/220 (38%), Gaps = 16/220 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y I L Q G I VID M ++P+ Y ++
Sbjct: 439 PNATTYNVIMHNLVQLGQIDRAASVIDEMEL---------------AGVQPNFRSYTTLM 483
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ AF L+++ + QKP +Y +++ G+ ++ + +P
Sbjct: 484 QGFASIGEIGLAFKCLKRVNEITQKPPIISYASLLKACCKAGRMQNAIAVTEEMAFAGVP 543
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + L++ + G EA ++ M + G Y C AG ++A
Sbjct: 544 MNNYIFNTLLDGWAQRGDMWEAYGIMQKMRQEGFTPDIHSYTSFVNACCKAGDMQKATET 603
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
++++ + +P + +YT LI + + A +++MK
Sbjct: 604 IEEMKQQDLQPNLQTYTILIHGWTSVSHPEKALICYDEMK 643
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/176 (18%), Positives = 72/176 (40%), Gaps = 20/176 (11%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMR--SLPKKKFKTGTLERWDPRLEPDIV 58
++ P ++Y S+ +AG ++ V + M +P +
Sbjct: 505 ITQKPPIISYASLLKACCKAGRMQNAIAVTEEMAFAGVPMNNY----------------- 547
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
++N +L+ +R A+ ++Q+++Q+G P +Y + G E ++
Sbjct: 548 IFNTLLDGWAQRGDMWEAYGIMQKMRQEGFTPDIHSYTSFVNACCKAGDMQKATETIEEM 607
Query: 119 -QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
Q+ PN Y +L++ ++A+ ++M+ G++ LYY + L S
Sbjct: 608 KQQDLQPNLQTYTILIHGWTSVSHPEKALICYDEMKAAGLIPDKPLYYCIVTSLLS 663
>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
Length = 568
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 142/329 (43%), Gaps = 36/329 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR---SLPKKKFKTGTL-------ERWDP--- 51
P+ V Y ++ G ++ D++ MR + ++ GT+ R D
Sbjct: 183 PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVK 242
Query: 52 ---------RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
++P+ V+YNA++ + + + A ++ ++G + TY L++ +
Sbjct: 243 VFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 302
Query: 103 LACGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
G+ YE ++ K + Y +L+N +EG +A+ E+M RRG+ +
Sbjct: 303 FMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATV 362
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L L G+ +E D+ + +P +V Y LI + SGNI A I +
Sbjct: 363 VTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE 422
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
M K +P+ VT N +++ G +EA KL EM K+G + PD+ T+
Sbjct: 423 MEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMT-----------KRG-IQPDLVTY 470
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLH 309
NT++ + + D + M++ G +
Sbjct: 471 NTLISGYSMKGDVKDALRIRNEMMNKGFN 499
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 114/237 (48%), Gaps = 14/237 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D+ YN ++N + + A + + + ++G + + TY ++ + G+ + F
Sbjct: 326 DVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLF 385
Query: 116 RK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ V++ P+ + Y L+N+ G D A + +ME++ I Y L R LC
Sbjct: 386 DEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLL 445
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTC 233
G+ +EA +D++ K +P +V+Y LI G++++A I N+M N +P L+T
Sbjct: 446 GRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTY 505
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
N +++ ++G ++A + +EM E+ + PD T+ ++++ E
Sbjct: 506 NALIQGLCKNGQGDDAENMVKEMVENG------------ITPDDSTYISLIEGLTTE 550
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 130/311 (41%), Gaps = 29/311 (9%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVMEVMLA 104
L R PR P+ V YN V+ R + + A ++++++++G P+ TYG V+
Sbjct: 176 LLRQMPR--PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCK 233
Query: 105 CGKYNLVYEFFRKV--QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G+ + + F ++ + P A+ Y L+ +GK D A+ + M RG+ + A
Sbjct: 234 VGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVA 293
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y L L G+ EA ++++ V +Y LI GN++ A IF M
Sbjct: 294 TYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENM 353
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE------------------DSNHI 263
+ +VT ++ A + G +E KLF E S +I
Sbjct: 354 SRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNI 413
Query: 264 NREYD-----KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRM 318
+R ++ +K + PD T+NT++ R D+ + M G+ + + +
Sbjct: 414 DRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTL 473
Query: 319 ILDASRAGKVE 329
I S G V+
Sbjct: 474 ISGYSMKGDVK 484
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 110/251 (43%), Gaps = 18/251 (7%)
Query: 93 TTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM 152
TT+ +++ + + GK E R++ + PNA+ Y ++ G+ A+ + +M
Sbjct: 155 TTFNIMLRHLCSAGKPARALELLRQMPR---PNAVTYNTVIAGFCSRGRVQAALDIMREM 211
Query: 153 -ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK-ICKVANKPLVVSYTGLIQACLDSG 210
ER GI + Y + C G+ +EA+ D+ + K KP V Y LI D G
Sbjct: 212 RERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQG 271
Query: 211 NIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
+ A ++M + + + T N++V A G EA +L +EM
Sbjct: 272 KLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMG-----------G 320
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
KGL + D++T+N +++ E +++ M G+ + +I S+ G+V+
Sbjct: 321 KGLAL-DVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQ 379
Query: 330 LLEITWEHLAR 340
+ ++ R
Sbjct: 380 ETDKLFDEAVR 390
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 125/270 (46%), Gaps = 19/270 (7%)
Query: 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK--SYIPNALAYKVLVNTLWRE 139
+L +Q +P+A TY V+ + G+ + R++++ PN Y +++ +
Sbjct: 175 ELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 234
Query: 140 GKTDEAVSAVEDMERRGIVGSAALYYD-LARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
G+ DEAV ++M +G V A+ Y+ L C GK + AL+ D++ + V +
Sbjct: 235 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 294
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y L+ A G A + +M + ++ T NI++ + + G ++A+++F+ M+
Sbjct: 295 YNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMS 354
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
++G V + T+ +++ A + + + + + ++ + G+ + +
Sbjct: 355 -----------RRG-VRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNA 402
Query: 318 MILDASRAGKVE-LLEITWEHLARADRITP 346
+I S +G ++ EI E + RI P
Sbjct: 403 LINSHSTSGNIDRAFEIMGEMEKK--RIAP 430
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 89/199 (44%), Gaps = 16/199 (8%)
Query: 8 VAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNAC 67
V Y S+ L + G ++E + D + + G + PD+V+YNA++N+
Sbjct: 363 VTYTSLIYALSKKGQVQETDKLFD-------EAVRRG--------IRPDLVLYNALINSH 407
Query: 68 VRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNA 126
+ AF ++ +++++ P TY +M + G+ + + ++ K I P+
Sbjct: 408 STSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDL 467
Query: 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK 186
+ Y L++ +G +A+ +M +G + Y L + LC G+ ++A + +
Sbjct: 468 VTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKE 527
Query: 187 ICKVANKPLVVSYTGLIQA 205
+ + P +Y LI+
Sbjct: 528 MVENGITPDDSTYISLIEG 546
>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
[Vitis vinifera]
Length = 811
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 148/352 (42%), Gaps = 51/352 (14%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D AY S+ G +E V M + K P ++ YN +LN
Sbjct: 199 DVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCK---------------PTLITYNVILN 243
Query: 66 ACVRRKQ-WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK---- 120
+ W ++ ++K G P + TY +++C + +YE V K
Sbjct: 244 VYGKMGMPWNKMVGLVDRMKSAGIAPDSYTY----NTLISCCRRGNLYEEAAGVLKEMKL 299
Query: 121 -SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ P+ + Y L++ + ++ EA+ +++ME G S Y L G E+
Sbjct: 300 AGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLED 359
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVK 238
AL +++ + KP V +YT L+ +G + A IF +M+N C PN+ T N ++K
Sbjct: 360 ALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIK 419
Query: 239 AYLEHGLFEEAMKLFQE------------------------MAEDSNHINREYDKKGLVI 274
+ G F E MK+F++ M + + + +E + G V
Sbjct: 420 MHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFV- 478
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
P+ TFNT++ + + +D VYKRML G++ + + ++ +R G
Sbjct: 479 PERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGG 530
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/274 (19%), Positives = 115/274 (41%), Gaps = 22/274 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLERW--- 49
PD V Y ++ G++ KE +V+ M SL + G LE
Sbjct: 304 PDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALEL 363
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ ++PD+ Y +L+ + + + A + ++++ +G KP+ T+ ++++
Sbjct: 364 KNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGN 423
Query: 105 CGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK+ + + F ++ P+ + + L++ + G E ++M+R G V
Sbjct: 424 RGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDT 483
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ L G ++A+ ++ + P + SY ++ A G + + + +MK
Sbjct: 484 FNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMK 543
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+ C PN +T ++ AY E L +E+
Sbjct: 544 DGRCKPNELTYCSLLHAYANGKEIERMCALAEEI 577
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/371 (19%), Positives = 143/371 (38%), Gaps = 69/371 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKK-FKT--------GTLER---- 48
PD V + ++ GQ G E+ V M+ +P++ F T G+ ++
Sbjct: 444 PDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAV 503
Query: 49 ----WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG-------- 96
+ + PD+ YNAVL A R W+ + VL ++K KP+ TY
Sbjct: 504 YKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYAN 563
Query: 97 ------------------------LVMEVMLACGKYNLVYE----FFRKVQKSYIPNALA 128
L+ ++L K +L+ E F Q+ + P+
Sbjct: 564 GKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITT 623
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
+V+ R +A ++ M+R G S Y L + E + + +I
Sbjct: 624 LNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREIL 683
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEHGLFE 247
+P ++SY +I A +G +++A+ + ++M+ +P+++T N + +Y +F
Sbjct: 684 AKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFV 743
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
EA+ + M + P+ T+N+++D R D+ + +
Sbjct: 744 EAIDVVCYMIKHGCK------------PNQSTYNSIVDWYCKLNRRDEASMFVNNLRKLD 791
Query: 308 LHFNAKRHLRM 318
H + R+
Sbjct: 792 PHISMDEECRL 802
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 118/284 (41%), Gaps = 56/284 (19%)
Query: 111 VYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
V+E+ R ++S + N V+++ L + G+ A S + ++ + G Y +
Sbjct: 149 VFEWVRNRKESELLLNGSIIAVIISILGKGGRVSAAASLLHNLCKDGFDVDVYAYTSMIT 208
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSY-----------------TGLIQ-------- 204
S G+ EA+M K+ +V KP +++Y GL+
Sbjct: 209 AFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKMGMPWNKMVGLVDRMKSAGIA 268
Query: 205 ----------ACLDSGNI-QNAAYIFNQMK--NFCSPNLVTCNIMVKAYLEHGLFEEAMK 251
+C GN+ + AA + +MK F SP+ VT N ++ Y + +EAM+
Sbjct: 269 PDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGF-SPDKVTYNALLDVYGKSRRSKEAME 327
Query: 252 LFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
+ QEM + P I T+N+++ A A + +D + +M+ G+ +
Sbjct: 328 VLQEMEGNG------------CPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPD 375
Query: 312 AKRHLRMILDASRAGK----VELLEITWEHLARADRITPPALIK 351
+ ++ +AGK V++ E + + T ALIK
Sbjct: 376 VFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIK 419
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/366 (17%), Positives = 139/366 (37%), Gaps = 74/366 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y ++ +AG K + + MR + +P+I +NA++
Sbjct: 374 PDVFTYTTLLSGFEKAGKDKAAVQIFEEMR---------------NEGCKPNICTFNALI 418
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YI 123
R ++ V + +K P T+ ++ V G + V F++++++ ++
Sbjct: 419 KMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFV 478
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG---KCEEA 180
P + L+++ R G D+A++ + M G+ + Y + L G + E+
Sbjct: 479 PERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKV 538
Query: 181 LMQM-DKICKVANKPLVVSYTGLIQACLDSGNIQNA------------------------ 215
L +M D CK P ++Y L+ A + I+
Sbjct: 539 LAEMKDGRCK----PNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVL 594
Query: 216 -------------AYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNH 262
A++ + + F SP++ T N MV Y + +A ++ M
Sbjct: 595 VNSKCDLLMETERAFLELRQRGF-SPDITTLNAMVSIYGRRQMVAKANEILDCM------ 647
Query: 263 INREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA 322
K+G P + T+N+++ + ++ E + + +L G+ + + +I
Sbjct: 648 ------KRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAY 701
Query: 323 SRAGKV 328
R G++
Sbjct: 702 CRNGRM 707
>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
Length = 798
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 119/259 (45%), Gaps = 19/259 (7%)
Query: 55 PDIVVYNAVLNACVRR-KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM---LACGKYNL 110
PD+V YN V+N +R +Q + A+ + Q+ QG P TY ++ + A K +
Sbjct: 200 PDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAV 259
Query: 111 VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
V R V+ +PN + + L++ GK ++A+ + M R G+ Y L
Sbjct: 260 V--LVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGY 317
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
LC G+ EA D + K +KP +Y L+ G++ ++ + M +N P+
Sbjct: 318 LCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPD 377
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
NI++ Y +HG ++AM LF +M ++GL PD T+ ++DA
Sbjct: 378 HYIFNILIGTYTKHGKVDDAMLLFSKMR-----------RQGLN-PDTVTYGIVMDALCM 425
Query: 290 EKRWDDLELVYKRMLHHGL 308
+ DD + R++ GL
Sbjct: 426 VGKVDDAMAQFGRLISEGL 444
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 131/307 (42%), Gaps = 30/307 (9%)
Query: 5 PDTVAYRSIAVTLGQAG-HIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
PD V+Y ++ L + G + + + D M D L PD+V YN++
Sbjct: 200 PDVVSYNTVINGLLREGRQLDTAYHLFDQM---------------LDQGLSPDVVTYNSI 244
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
++A + + + A VL ++ + G P+ T+ ++ + GK N F+++ + +
Sbjct: 245 ISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGV 304
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ Y L+ L + G++ EA + M +RG ++A Y L + G +
Sbjct: 305 EPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHH 364
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+D + + +P + LI G + +A +F++M + +P+ VT I++ A
Sbjct: 365 LLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALC 424
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G ++AM F + + + PD F ++ A +WD E +
Sbjct: 425 MVGKVDDAMAQFGRLISEG------------LTPDAVVFRNLIHGLCARDKWDKAEELAV 472
Query: 302 RMLHHGL 308
M+ G+
Sbjct: 473 EMIGRGI 479
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 119/294 (40%), Gaps = 49/294 (16%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+EPD+ YN ++ + + A + + ++G KP++ TYG ++ G ++
Sbjct: 304 VEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMH 363
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ ++ I P+ + +L+ T + GK D+A+ M R+G+ Y + L
Sbjct: 364 HLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDAL 423
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA----------------------CLDS 209
C GK ++A+ Q ++ P V + LI C ++
Sbjct: 424 CMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNN 483
Query: 210 -------------GNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
G + A IF+ M +++T N ++ Y HG +EA KL +
Sbjct: 484 IFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEG 543
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH 309
M D V P+ T+NTM++ R +D ++++M G++
Sbjct: 544 MVLDG------------VKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVN 585
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/380 (19%), Positives = 150/380 (39%), Gaps = 70/380 (18%)
Query: 51 PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM-------- 102
P++ P+++ Y+ V++ C R + AF L ++ + G A T+ +++ +
Sbjct: 85 PKVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSE 144
Query: 103 -----------LACGKYNLVYEFFRK-----------------------VQKSYIPNALA 128
L C Y K + Y P+ ++
Sbjct: 145 AMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVS 204
Query: 129 YKVLVNTLWREGKT-DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
Y ++N L REG+ D A + M +G+ Y + L A ++A + + ++
Sbjct: 205 YNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRM 264
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLF 246
K P +++ L+ SG +A +F +M ++ P++ T N ++ ++G
Sbjct: 265 VKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRS 324
Query: 247 EEAMKLFQEMAEDSNHIN--------REYDKKGLVI---------------PDIYTFNTM 283
EA K+F M + + N Y +G ++ PD Y FN +
Sbjct: 325 MEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNIL 384
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA-SRAGKVELLEITWEHLARAD 342
+ + DD L++ +M GL+ + + +++DA GKV+ + L ++
Sbjct: 385 IGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTY-GIVMDALCMVGKVDDAMAQFGRLI-SE 442
Query: 343 RITPPALIKERFCNRLENKD 362
+TP A++ + L +D
Sbjct: 443 GLTPDAVVFRNLIHGLCARD 462
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 126/316 (39%), Gaps = 60/316 (18%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN--- 109
++PD ++N ++ + + + A + ++++QG P TYG+VM+ + GK +
Sbjct: 374 IQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAM 433
Query: 110 -----LVYE-------FFRK---------------------VQKSYIPNALAYKVLVNTL 136
L+ E FR + + PN + + L+N L
Sbjct: 434 AQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHL 493
Query: 137 WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV 196
+EG A + + M R + Y L C GK +EA ++ + KP
Sbjct: 494 CKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNE 553
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
V+Y +I +G I++A +F QM + +P +VT + +++ + A +L+
Sbjct: 554 VTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLW 613
Query: 256 MAEDS--------NHI------NREYDKKGLVIPDIY---------TFNTMLDACAAEKR 292
M + N I N D + ++Y TFN M+DA R
Sbjct: 614 MIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGR 673
Query: 293 WDDLELVYKRMLHHGL 308
D+ + ++ +L GL
Sbjct: 674 HDEAKDLFASLLARGL 689
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 83/194 (42%), Gaps = 2/194 (1%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++ D++ YN +++ + + A +L+ + G KP+ TY ++ G+ +
Sbjct: 514 VQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAF 573
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
FR++ K P + Y ++ L++ +T A M + GI Y + L
Sbjct: 574 SLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGL 633
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQMKNFCSPNL 230
C ++AL + + ++ +I A L G A +F + + PN+
Sbjct: 634 CQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNV 693
Query: 231 VTCNIMVKAYLEHG 244
VT +M+K+ +E G
Sbjct: 694 VTYWLMMKSLIEQG 707
>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
Length = 695
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 105/393 (26%), Positives = 170/393 (43%), Gaps = 38/393 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PD +N +++A + + A VL + ++G+KP TY +ME C + N V+
Sbjct: 261 VDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGY--CSREN-VH 317
Query: 113 E----FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
E F R V++ P+ L Y VL++ + DEA+ +++ + +V + A Y L
Sbjct: 318 EARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLI 377
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMKNFCS 227
LC++G+ +D++ A P VV+Y LI A G I A + MK
Sbjct: 378 DGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVK 437
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
PN+VT N M+ Y A +F M K GL PDI +N +++
Sbjct: 438 PNIVTYNAMMDGYCLRNNVNVAKDIFNRMV-----------KSGLE-PDILNYNVLINGY 485
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADR 343
+ D+ +++K M H L + + +I G++ ELL+ + D
Sbjct: 486 CKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDV 545
Query: 344 ITPPALIKERFCNRLENKDYGSAISCLVSHPVSGS-PEFSRNAWL--KFFKENSQHFGQD 400
IT L+ + FC + + + AIS L V G P+F N + K +D
Sbjct: 546 ITYNILL-DAFC---KTQPFDKAIS-LFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAED 600
Query: 401 TLIQLLHEASSSLTTRNGSPYPVLQNLISSCKD 433
L LL S N Y +L N + CKD
Sbjct: 601 ALKHLLMHGCSP----NVQTYTILINAL--CKD 627
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 135/346 (39%), Gaps = 63/346 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P +Y S+ L +G I + ++D M + PD+V YN ++
Sbjct: 368 PTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQP---------------PDVVTYNILI 412
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+A + + A VL + ++G KP+ TY +M+ N+ + F ++ KS +
Sbjct: 413 DALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLE 472
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ L Y VL+N + DEA+ ++M + ++ A Y L LC+ G+
Sbjct: 473 PDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQEL 532
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ---------------------- 221
+D++C P V++Y L+ A + A +F Q
Sbjct: 533 LDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKG 592
Query: 222 -------------MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD 268
+ + CSPN+ T I++ A + G F EAM L +M ++
Sbjct: 593 EKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRP------ 646
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKR 314
PD TF ++ D E + + M+ GL KR
Sbjct: 647 ------PDAITFEIIIGVLLQRNETDKAEKLREEMIARGLVNIEKR 686
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 112/257 (43%), Gaps = 14/257 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+P++V +N ++N A Q L QG TYG ++ + G+
Sbjct: 122 QPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALH 181
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++++KS + PN + Y L++ L ++G +A+ + RGI+ A Y L C
Sbjct: 182 LLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCC 241
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
S G+ +E + K+ + P ++ LI A G I A + M K P++V
Sbjct: 242 SVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIV 301
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N +++ Y EA +LF M K+GL PD+ +N ++D K
Sbjct: 302 TYNALMEGYCSRENVHEARELFNRMV-----------KRGLE-PDVLNYNVLIDGYCKTK 349
Query: 292 RWDDLELVYKRMLHHGL 308
D+ +++K + + L
Sbjct: 350 MVDEAMVLFKELCNKNL 366
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 110/255 (43%), Gaps = 14/255 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P V++ +L A VR + A + QL+ +G PS T+ +++ +
Sbjct: 53 PPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSL 112
Query: 115 FRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ KS Y PN + + ++N G +A+ +++ +G + Y L L
Sbjct: 113 LATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSK 172
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+ + AL + ++ K + +P +V Y+ LI G + +A + +Q+ + + VT
Sbjct: 173 NGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVT 232
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ G ++E +L +M ++ V PD YTFN ++DA E R
Sbjct: 233 YNSLIDGCCSVGRWQEVTQLLTKMVREN------------VDPDDYTFNILIDALCKEGR 280
Query: 293 WDDLELVYKRMLHHG 307
+ + V M G
Sbjct: 281 ILEAQGVLAMMSKRG 295
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/285 (20%), Positives = 116/285 (40%), Gaps = 55/285 (19%)
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F R V+ P + L+ + R G A+S ++ +GI S A + L C
Sbjct: 43 FNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFH 102
Query: 174 AGKCEEALMQMDKICKVANKPLVVSY---------TGLIQACLD---------------- 208
A + I K +P +V++ G+I LD
Sbjct: 103 QSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFT 162
Query: 209 ----------SGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
+G I+ A ++ +M K+ PNLV + ++ + G +A+ L ++
Sbjct: 163 YGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIG 222
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
E +G+++ D T+N+++D C + RW ++ + +M+ + +
Sbjct: 223 E-----------RGILL-DAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPD-DYTFN 269
Query: 318 MILDA-SRAGKV----ELLEITWEHLARADRITPPALIKERFCNR 357
+++DA + G++ +L + + + D +T AL+ E +C+R
Sbjct: 270 ILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALM-EGYCSR 313
>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
Length = 331
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 145/340 (42%), Gaps = 35/340 (10%)
Query: 1 MSSY--PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIV 58
M+ Y PD + Y I L + I + ++ M + ++PD
Sbjct: 1 MARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRG---------------IKPDAF 45
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
+YN VL+ + ++ E A + +++ +Q P+ TY ++ + + YE F+++
Sbjct: 46 IYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEM 105
Query: 119 Q-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
K Y+P ++Y L++ ++ A + M R V + Y L L +GK
Sbjct: 106 AGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKV 165
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIM 236
+ A +D + K P V +Y+ LI + A + QM +P +VT NI+
Sbjct: 166 QAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNIL 225
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ + E+A KLF+ MA+ H P + T+NT+L A K+ D
Sbjct: 226 LNSLCRADKLEDAFKLFRGMAQRRCH------------PTVVTYNTLLRALCHHKQLDGA 273
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLE 332
+Y M+ G +A + + +RAGKV EL+E
Sbjct: 274 HRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELME 313
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 86/198 (43%), Gaps = 16/198 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L ++G ++ +V+D M K G + P++ Y+ ++
Sbjct: 147 PNVVTYTTLIDGLSKSGKVQAAAEVLDGM-------VKKG--------VTPNVATYSCLI 191
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + ++ + A +L+Q+ QG P+ TY +++ + K ++ FR + Q+
Sbjct: 192 DGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCH 251
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y L+ L + D A +M +G A Y LA L AGK EA
Sbjct: 252 PTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQEL 311
Query: 184 MDKICKVANKPLVVSYTG 201
M+K+ P S G
Sbjct: 312 MEKMKLTKRNPFGRSSQG 329
>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 634
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 123/253 (48%), Gaps = 14/253 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP IV +++LN K+ A ++ Q+ + G +P T+ ++ + K +
Sbjct: 152 EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 211
Query: 114 FF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R VQ+ PN + Y V+VN L + G TD A++ + ME I ++ + LC
Sbjct: 212 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLC 271
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
++AL ++ +P VV+Y+ LI G +A+ + + M + +PNLV
Sbjct: 272 KYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 331
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ A+++ G F EA KL+ +M I R D PDI+T+N++++
Sbjct: 332 TFNALIDAFVKEGKFVEAEKLYDDM------IKRSID------PDIFTYNSLVNGFCMHD 379
Query: 292 RWDDLELVYKRML 304
R D + +++ M+
Sbjct: 380 RLDKAKQMFEFMV 392
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 128/280 (45%), Gaps = 14/280 (5%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
++E D+V++N ++++ + + + A + ++++ +G +P+ TY ++ + + G+++
Sbjct: 255 KIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDA 314
Query: 112 YEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ ++K PN + + L++ +EGK EA +DM +R I Y L
Sbjct: 315 SQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNG 374
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPN 229
C + ++A + + P VV+Y LI+ S +++ +F +M + +
Sbjct: 375 FCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 434
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
VT +++ G + A K+F++M D V PDI T++ +LD
Sbjct: 435 TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG------------VPPDIMTYSILLDGLCN 482
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + V+ M + + + MI +AGKV+
Sbjct: 483 NGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 522
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 129/295 (43%), Gaps = 32/295 (10%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLA 104
+ ++ P++V +NA+++A V+ ++ A + + ++ P TY G M L
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRL- 381
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
K ++EF V K P+ + Y L+ + + ++ +M RG+VG Y
Sbjct: 382 -DKAKQMFEFM--VSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 438
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-K 223
L + L G C+ A ++ P +++Y+ L+ ++G ++ A +F+ M K
Sbjct: 439 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 498
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
+ ++ M++ + G ++ LF ++ KG V P++ T+NTM
Sbjct: 499 SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLS-----------LKG-VKPNVVTYNTM 546
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNA-------KRHLRMILDASRAGKVELL 331
+ +++ + + K+M G N+ + HLR D +A EL+
Sbjct: 547 ISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLR---DGDKAASAELI 598
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 98/207 (47%), Gaps = 8/207 (3%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V YN ++ + K+ E + +++ +G TY +++ + G + +
Sbjct: 398 PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV 457
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F++ V P+ + Y +L++ L GK ++A+ + M++ I +Y + +C
Sbjct: 458 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 517
Query: 174 AGKCEEALMQMDKICKVA---NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
AGK ++ D C ++ KP VV+Y +I +Q A + +MK + PN
Sbjct: 518 AGKVDDG---WDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPN 574
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEM 256
T N +++A+L G + +L +EM
Sbjct: 575 SGTYNTLIRAHLRDGDKAASAELIREM 601
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/259 (19%), Positives = 116/259 (44%), Gaps = 14/259 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P IV +N +L+A + K+++ + +++++ TY +++ + +L
Sbjct: 83 PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 142
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y P+ + L+N + +AV+ V+ M G + L L
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
K EA+ +D++ + +P +V+Y ++ G+ A + N+M+ ++V
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 262
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ + ++ ++A+ LF+EM + KG + P++ T+++++ + R
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEM-----------ETKG-IRPNVVTYSSLISCLCSYGR 310
Query: 293 WDDLELVYKRMLHHGLHFN 311
W D + M+ ++ N
Sbjct: 311 WSDASQLLSDMIEKKINPN 329
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 92/242 (38%), Gaps = 48/242 (19%)
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F V+ +P+ + + L++ + + K D +S E M+R IV Y L C C
Sbjct: 73 FGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCR 132
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM----------- 222
+ AL + K+ K+ +P +V+ + L+ I +A + +QM
Sbjct: 133 RSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTIT 192
Query: 223 -------------------------KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
+ C PNLVT ++V + G + A+ L +M
Sbjct: 193 FTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKM- 251
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
+ + D+ FNT++D+ + DD ++K M G+ N +
Sbjct: 252 -----------EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 300
Query: 318 MI 319
+I
Sbjct: 301 LI 302
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 1/173 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L D V Y ++ + A V +Q+ G P TY ++++ + GK
Sbjct: 431 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 490
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F +QKS I + Y ++ + + GK D+ + +G+ + Y + L
Sbjct: 491 EVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 550
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
CS +EA + K+ + P +Y LI+A L G+ +A + +M++
Sbjct: 551 CSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRS 603
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/181 (18%), Positives = 74/181 (40%), Gaps = 17/181 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y + L G +++ +V D M+ ++ DI +Y ++
Sbjct: 468 PDIMTYSILLDGLCNNGKLEKALEVFDYMQK---------------SEIKLDIYIYTTMI 512
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-I 123
+ + + + + L +G KP+ TY ++ + + Y +K+++ +
Sbjct: 513 EGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPL 572
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN+ Y L+ R+G + + +M VG A+ +A L G+ +++ +
Sbjct: 573 PNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANML-HDGRLDKSFLD 631
Query: 184 M 184
M
Sbjct: 632 M 632
>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats [Arabidopsis thaliana]
gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 632
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/363 (20%), Positives = 158/363 (43%), Gaps = 42/363 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V S+ + I + ++D M + K PD + ++
Sbjct: 151 PDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYK---------------PDTFTFTTLI 195
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + A ++ Q+ Q+G +P TYG V+ + G +L +K++K I
Sbjct: 196 HGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE 255
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y +++ L + D+A++ +M+ +GI Y L CLC+ G+ +A
Sbjct: 256 ADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 315
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + + P VV+++ LI A + G + A ++++M K P++ T + ++ +
Sbjct: 316 LSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM 375
Query: 243 HGLFEEAMKLFQEM------------------------AEDSNHINREYDKKGLVIPDIY 278
H +EA +F+ M E+ + RE ++GLV +
Sbjct: 376 HDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLV-GNTV 434
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
T+ T++ + D+ ++V+K+M+ G+H N + ++ + GK+ + +E+L
Sbjct: 435 TYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYL 494
Query: 339 ARA 341
R+
Sbjct: 495 QRS 497
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 133/278 (47%), Gaps = 14/278 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPDIV +++LN K+ A ++ Q+ + G KP T+ ++ + K +
Sbjct: 150 EPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVA 209
Query: 114 FFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ VQ+ P+ + Y +VN L + G D A+S ++ ME+ I +Y + LC
Sbjct: 210 LVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLC 269
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
++AL ++ +P V +Y+ LI + G +A+ + + M + +PN+V
Sbjct: 270 KYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVV 329
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T + ++ A+++ G EA KL+ EM I R D PDI+T++++++
Sbjct: 330 TFSALIDAFVKEGKLVEAEKLYDEM------IKRSID------PDIFTYSSLINGFCMHD 377
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
R D+ + +++ M+ N + +I +A +VE
Sbjct: 378 RLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVE 415
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 84/363 (23%), Positives = 146/363 (40%), Gaps = 66/363 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ L + G I D SL KK K ++E D+V+YN ++
Sbjct: 221 PDLVTYGTVVNGLCKRGDI-------DLALSLLKKMEK--------GKIEADVVIYNTII 265
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + K + A + ++ +G +P TY ++ + G+++ +++
Sbjct: 266 DGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKIN 325
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI-------------------------- 157
PN + + L++ +EGK EA ++M +R I
Sbjct: 326 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 385
Query: 158 ---------VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+ Y L + C A + EE + ++ + V+YT LI
Sbjct: 386 FELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQ 445
Query: 209 SGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
+ + NA +F QM + PN++T NI++ ++G +AM +F EY
Sbjct: 446 ARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVF------------EY 493
Query: 268 DKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
++ + PDIYT+N M++ C A K D EL L G+ N + MI R G
Sbjct: 494 LQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSL-KGVSPNVIAYNTMISGFCRKG 552
Query: 327 KVE 329
E
Sbjct: 553 SKE 555
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/338 (21%), Positives = 144/338 (42%), Gaps = 41/338 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y S+ L G + ++ M +ER ++ P++V ++A++
Sbjct: 291 PDVFTYSSLISCLCNYGRWSDASRLLSDM------------IER---KINPNVVTFSALI 335
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNLVYEFFRKVQ 119
+A V+ + A + ++ ++ P TY G M L K+ ++E +
Sbjct: 336 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH--MFELM--IS 391
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K PN + Y L+ + + +E + +M +RG+VG+ Y L A C+
Sbjct: 392 KDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDN 451
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A M ++ V P +++Y L+ +G + A +F + ++ P++ T NIM++
Sbjct: 452 AQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIE 511
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G E+ +LF ++ KG V P++ +NTM+ + ++ +
Sbjct: 512 GMCKAGKVEDGWELFCNLS-----------LKG-VSPNVIAYNTMISGFCRKGSKEEADS 559
Query: 299 VYKRMLHHGLHFNAKRHLRMI----LDASRAGKVELLE 332
+ K+M G N+ + +I D R EL++
Sbjct: 560 LLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIK 597
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 136/313 (43%), Gaps = 21/313 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P IV +N +L+A + ++E + +Q++ G TY + + + +L
Sbjct: 81 PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y P+ + L+N + +AV+ V+ M G + L L
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
K EA+ +D++ + +P +V+Y ++ G+I A + +M K ++V
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 260
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ ++ ++A+ LF EM D KG + PD++T+++++ R
Sbjct: 261 YNTIIDGLCKYKHMDDALNLFTEM-----------DNKG-IRPDVFTYSSLISCLCNYGR 308
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLARA---DRITPPA 348
W D + M+ ++ N +I + GK VE ++ E + R+ D T +
Sbjct: 309 WSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSS 368
Query: 349 LIKERFC--NRLE 359
LI FC +RL+
Sbjct: 369 LING-FCMHDRLD 380
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 6/206 (2%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA---CGKYNLV 111
P++V Y+ ++ + K+ E + +++ Q+G + TY ++ C +V
Sbjct: 396 PNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 455
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++ + V PN L Y +L++ L + GK +A+ E ++R + Y + +
Sbjct: 456 FK--QMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGM 513
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C AGK E+ + P V++Y +I G+ + A + +MK + PN
Sbjct: 514 CKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNS 573
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEM 256
T N +++A L G E + +L +EM
Sbjct: 574 GTYNTLIRARLRDGDREASAELIKEM 599
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/222 (18%), Positives = 97/222 (43%), Gaps = 16/222 (7%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ V Y ++ +A ++E ++ R + ++ T V Y +
Sbjct: 395 FPNVVTYSTLIKGFCKAKRVEEGMELF---REMSQRGLVGNT------------VTYTTL 439
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
++ + + + A V +Q+ G P+ TY ++++ + GK F +Q+S +
Sbjct: 440 IHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTM 499
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ Y +++ + + GK ++ ++ +G+ + Y + C G EEA
Sbjct: 500 EPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADS 559
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
+ K+ + P +Y LI+A L G+ + +A + +M++
Sbjct: 560 LLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRS 601
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/133 (19%), Positives = 57/133 (42%), Gaps = 2/133 (1%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+EPDI YN ++ + + E + + L +G P+ Y ++ G
Sbjct: 499 MEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEAD 558
Query: 113 EFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+K+++ +PN+ Y L+ R+G + + +++M G G A+ L +
Sbjct: 559 SLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDAST-IGLVTNM 617
Query: 172 CSAGKCEEALMQM 184
G+ +++ + M
Sbjct: 618 LHDGRLDKSFLDM 630
>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
Length = 609
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 131/281 (46%), Gaps = 20/281 (7%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY----N 109
+PD+V YN ++N + + + A L + G +P+ T+ +++ M + G++
Sbjct: 114 KPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEK 173
Query: 110 LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
L+ + RK P+ + + +L+N L R+G A+ +E M G ++ Y L
Sbjct: 174 LLSDMLRK---GCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLH 230
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSP 228
C K + A+ +D + P +V+Y L+ A G + A I NQ+ + CSP
Sbjct: 231 GFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSP 290
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
L+T N ++ + G E A+KL EM +KGL PDI T+++++ +
Sbjct: 291 VLITYNTVIDGLSKVGKTERAIKLLDEMR-----------RKGLK-PDIITYSSLVSGLS 338
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
E + D+ + + G+ NA + ++L ++ + +
Sbjct: 339 REGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTD 379
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 4/178 (2%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDIV YN +L A + + + A +L QL +G P TY V++ + GK +
Sbjct: 255 PDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKL 314
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++++ + P+ + Y LV+ L REGK DEA+ D+E GI +A Y + LC
Sbjct: 315 LDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCK 374
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV 231
+ + + A+ + + KP +YT LI+ G + A + N++ CS LV
Sbjct: 375 SRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNEL---CSRGLV 429
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 92/204 (45%), Gaps = 2/204 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ + YN +L+ + K+ + A L + +G P TY ++ + GK ++ E
Sbjct: 220 PNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEI 279
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ K P + Y +++ L + GKT+ A+ +++M R+G+ Y L L
Sbjct: 280 LNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSR 339
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA-YIFNQMKNFCSPNLVT 232
GK +EA+ + + +P ++Y ++ S A ++ + C P T
Sbjct: 340 EGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEAT 399
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEM 256
I+++ GL +EA+ L E+
Sbjct: 400 YTILIEGIAYEGLAKEALDLLNEL 423
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/204 (19%), Positives = 89/204 (43%), Gaps = 13/204 (6%)
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
+ V T +E +A+ +++M +G Y L +C G+ +EA+ ++ +
Sbjct: 84 GFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNM 143
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLF 246
+P V+++ ++++ +G +A + + M + CSP++VT NI++ GL
Sbjct: 144 PSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLL 203
Query: 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306
A+ + ++M P+ ++N +L EK+ D M+
Sbjct: 204 GRAIDILEKMPMHG------------CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSR 251
Query: 307 GLHFNAKRHLRMILDASRAGKVEL 330
G + + + ++ + GKV++
Sbjct: 252 GCYPDIVTYNTLLTALCKDGKVDV 275
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 78/180 (43%), Gaps = 21/180 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIK---ELFD----------------VIDSMRSLPKKKFKTG 44
YPD V Y ++ L + G + E+ + VID + + K +
Sbjct: 254 YPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIK 313
Query: 45 TLERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
L+ + L+PDI+ Y+++++ R + + A L+ G +P+A TY +M +
Sbjct: 314 LLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLC 373
Query: 104 ACGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+ + +F + K P Y +L+ + EG EA+ + ++ RG+V ++
Sbjct: 374 KSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSS 433
>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 788
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 105/393 (26%), Positives = 170/393 (43%), Gaps = 38/393 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PD +N +++A + + A VL + ++G+KP TY +ME C + N V+
Sbjct: 261 VDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGY--CSREN-VH 317
Query: 113 E----FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
E F R V++ P+ L Y VL++ + DEA+ +++ + +V + A Y L
Sbjct: 318 EARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLI 377
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMKNFCS 227
LC++G+ +D++ A P VV+Y LI A G I A + MK
Sbjct: 378 DGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVK 437
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
PN+VT N M+ Y A +F M K GL PDI +N +++
Sbjct: 438 PNIVTYNAMMDGYCLRNNVNVAKDIFNRMV-----------KSGLE-PDILNYNVLINGY 485
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADR 343
+ D+ +++K M H L + + +I G++ ELL+ + D
Sbjct: 486 CKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDV 545
Query: 344 ITPPALIKERFCNRLENKDYGSAISCLVSHPVSGS-PEFSRNAWL--KFFKENSQHFGQD 400
IT L+ + FC + + + AIS L V G P+F N + K +D
Sbjct: 546 ITYNILL-DAFC---KTQPFDKAIS-LFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAED 600
Query: 401 TLIQLLHEASSSLTTRNGSPYPVLQNLISSCKD 433
L LL S N Y +L N + CKD
Sbjct: 601 ALKHLLMHGCSP----NVQTYTILINAL--CKD 627
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/340 (22%), Positives = 135/340 (39%), Gaps = 63/340 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P +Y S+ L +G I + ++D M + PD+V YN ++
Sbjct: 368 PTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQP---------------PDVVTYNILI 412
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+A + + A VL + ++G KP+ TY +M+ N+ + F ++ KS +
Sbjct: 413 DALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLE 472
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ L Y VL+N + DEA+ ++M + ++ A Y L LC+ G+
Sbjct: 473 PDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQEL 532
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ---------------------- 221
+D++C P V++Y L+ A + A +F Q
Sbjct: 533 LDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKG 592
Query: 222 -------------MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD 268
+ + CSPN+ T I++ A + G F EAM L +M ++ D
Sbjct: 593 EKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDN--------D 644
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+ PD TF ++ D E + + M+ GL
Sbjct: 645 RP----PDAITFEIIIGVLLQRNETDKAEKLREEMIARGL 680
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 112/257 (43%), Gaps = 14/257 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+P++V +N ++N A Q L QG TYG ++ + G+
Sbjct: 122 QPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALH 181
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++++KS + PN + Y L++ L ++G +A+ + RGI+ A Y L C
Sbjct: 182 LLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCC 241
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
S G+ +E + K+ + P ++ LI A G I A + M K P++V
Sbjct: 242 SVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIV 301
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N +++ Y EA +LF M K+GL PD+ +N ++D K
Sbjct: 302 TYNALMEGYCSRENVHEARELFNRMV-----------KRGLE-PDVLNYNVLIDGYCKTK 349
Query: 292 RWDDLELVYKRMLHHGL 308
D+ +++K + + L
Sbjct: 350 MVDEAMVLFKELCNKNL 366
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 110/255 (43%), Gaps = 14/255 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P V++ +L A VR + A + QL+ +G PS T+ +++ +
Sbjct: 53 PPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSL 112
Query: 115 FRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ KS Y PN + + ++N G +A+ +++ +G + Y L L
Sbjct: 113 LATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSK 172
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+ + AL + ++ K + +P +V Y+ LI G + +A + +Q+ + + VT
Sbjct: 173 NGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVT 232
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ G ++E +L +M ++ V PD YTFN ++DA E R
Sbjct: 233 YNSLIDGCCSVGRWQEVTQLLTKMVREN------------VDPDDYTFNILIDALCKEGR 280
Query: 293 WDDLELVYKRMLHHG 307
+ + V M G
Sbjct: 281 ILEAQGVLAMMSKRG 295
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 82/206 (39%), Gaps = 5/206 (2%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PDI YN++++ + +L ++ GQ P TY ++++ ++
Sbjct: 506 LIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAI 565
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
FR++ + P+ +V+ L + K A A++ + G + Y L LC
Sbjct: 566 SLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALC 625
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVT 232
G EA++ + K+ P +++ +I L A + +M + LV
Sbjct: 626 KDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEM---IARGLV- 681
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAE 258
NI H +F A FQ + E
Sbjct: 682 -NIEKSLNQSHNVFFPASSGFQSVTE 706
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/285 (20%), Positives = 116/285 (40%), Gaps = 55/285 (19%)
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F R V+ P + L+ + R G A+S ++ +GI S A + L C
Sbjct: 43 FNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFH 102
Query: 174 AGKCEEALMQMDKICKVANKPLVVSY---------TGLIQACLD---------------- 208
A + I K +P +V++ G+I LD
Sbjct: 103 QSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFT 162
Query: 209 ----------SGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
+G I+ A ++ +M K+ PNLV + ++ + G +A+ L ++
Sbjct: 163 YGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIG 222
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
E +G+++ D T+N+++D C + RW ++ + +M+ + +
Sbjct: 223 E-----------RGILL-DAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPD-DYTFN 269
Query: 318 MILDA-SRAGKV----ELLEITWEHLARADRITPPALIKERFCNR 357
+++DA + G++ +L + + + D +T AL+ E +C+R
Sbjct: 270 ILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALM-EGYCSR 313
>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial [Vitis vinifera]
gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/311 (20%), Positives = 139/311 (44%), Gaps = 25/311 (8%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P+ V + + L + + E +V + M F +EPD++ Y
Sbjct: 334 MDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGF----------LVEPDVITY 383
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
N +++ + + E ++++++ Q + P+ TY +++ E F ++
Sbjct: 384 NTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMN 443
Query: 120 KSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
K +P N + LV+ + + G+ + AV +M+ +G+ G+A Y L R C+ E
Sbjct: 444 KDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIE 503
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMV 237
+A+ D++ + P + Y LI +G + A+++ ++MK SP++V+ N+++
Sbjct: 504 KAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLI 563
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ +EA ++ +EM + + PD T+NT++ + +
Sbjct: 564 NGFCRKNKLDEAYEMLKEM------------ENAGIKPDGVTYNTLISHFSKTGDFSTAH 611
Query: 298 LVYKRMLHHGL 308
+ K+M+ GL
Sbjct: 612 RLMKKMVKEGL 622
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/227 (19%), Positives = 92/227 (40%), Gaps = 52/227 (22%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ L QAG + V+ M+ + PDIV +N ++
Sbjct: 519 PDAIVYYTLISGLSQAGKLDRASFVLSKMK---------------EAGFSPDIVSFNVLI 563
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N R+ + + A+ +L++++ G KP TY ++ G ++ + +K+ K +
Sbjct: 564 NGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLV 623
Query: 124 ------------------------------------PNALAYKVLVNTLWREGKTDEAVS 147
PN + Y +L+N+L R+ + D A+S
Sbjct: 624 PTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALS 683
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194
++DM+ +G+ + + + + L +A MD++ + A P
Sbjct: 684 LMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNP 730
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/312 (21%), Positives = 121/312 (38%), Gaps = 63/312 (20%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQK--PSATTYGLVM-------EVMLACGKYN 109
+ N +++ R+ + + A +L ++ Q + P++ T +V +V A +
Sbjct: 194 IRNILIDVLFRKGRVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEE 253
Query: 110 LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA----ALYY 165
+V + + PN++ L++ L R G+TD A + + + G V A AL
Sbjct: 254 IVGLVSKFAEHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLT 313
Query: 166 DLARC-------------------------------LCSAGKCEEALMQMDKICKVAN-- 192
L R LC + +EAL +K+ +
Sbjct: 314 ALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNG 373
Query: 193 ---KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--FCSPNLVTCNIMVKAYLEHGLFE 247
+P V++Y LI G + + +M++ C PN VT N ++ Y + + E
Sbjct: 374 FLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIE 433
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
A +LF +M +D V P++ T NT++D R + + M G
Sbjct: 434 AARELFDQMNKDG------------VPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKG 481
Query: 308 LHFNAKRHLRMI 319
L NA + +I
Sbjct: 482 LKGNAVTYTALI 493
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 64/150 (42%), Gaps = 15/150 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y ++ G++ E + M S K + P+ V+YN ++
Sbjct: 624 PTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSK--------------VPPNTVIYNILI 669
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYI 123
N+ R+ Q + A ++ +K +G KP+ T+ + + + + +E R + +
Sbjct: 670 NSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACN 729
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDME 153
P+ + ++L L G+T + S V+ E
Sbjct: 730 PDYITMEILTEWLSAVGETAKLKSFVQGYE 759
>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
Length = 636
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 157/343 (45%), Gaps = 28/343 (8%)
Query: 21 GHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVL 80
GH+ + D++ + RSL ++ K G L PDIV YN +++ + + + +
Sbjct: 140 GHVCKEGDMLTA-RSLFEQMKKMG--------LTPDIVTYNTLIDGYGKIGLLDESVCLF 190
Query: 81 QQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWRE 139
+++K G +P TY ++ +EFFR+++ K PN ++Y L++ L +E
Sbjct: 191 EEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKE 250
Query: 140 GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSY 199
G A+ DM R G++ + Y L C AG EA M D++ + +V+Y
Sbjct: 251 GMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTY 310
Query: 200 TGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
T L+ + G + A +F M K +PNL ++ +++ ++AM+LF EM
Sbjct: 311 TTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEM-- 368
Query: 259 DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRM 318
RE D K PDI + T++ +E + ++ +++ M G+ N + +
Sbjct: 369 ------REKDIK----PDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTL 418
Query: 319 ILDASRAGK----VELLEITWEHLARADRITPPALIKERFCNR 357
+ +AG + LLE + +T ALI + C R
Sbjct: 419 MDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALI-DGLCKR 460
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/364 (20%), Positives = 146/364 (40%), Gaps = 40/364 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y S+ +AG++ E F + D M ++ +IV Y +L
Sbjct: 270 PNEFTYSSLIDANCKAGNLGEAFMLADEM---------------LQEHVDLNIVTYTTLL 314
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ A + + + + G P+ Y ++ + + E F ++++ I
Sbjct: 315 DGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIK 374
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ L + +V L E K +E + +M+ GI + +Y L AG EA+
Sbjct: 375 PDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINL 434
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
++++ + + VV++ LI G +Q A Y F +M + PN+ ++ +
Sbjct: 435 LEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCK 494
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ +A KLF EM +D N +IPD + M+D + + + +
Sbjct: 495 NNCIGDAKKLFDEM-QDKN-----------MIPDKIAYTAMIDGNLKHGNFQEALNMRNK 542
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR---ADRITPPALIKERFCNRLE 359
M+ G+ + + ++ S+ G+V+ AR A+ I + E C RL
Sbjct: 543 MMEMGIELDLYAYTSLVWGLSQCGQVQ--------QARKFLAEMIGKGIIPDETLCTRLL 594
Query: 360 NKDY 363
K Y
Sbjct: 595 RKHY 598
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/294 (19%), Positives = 127/294 (43%), Gaps = 15/294 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P V++A+ + V E A ++ + P A + + + G+ +L +F
Sbjct: 60 PGFGVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDF 119
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
FR + + I P Y +++ + +EG A S E M++ G+ Y L
Sbjct: 120 FRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGK 179
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
G +E++ +++ + +P V++Y LI + + A F +MK+ PN+++
Sbjct: 180 IGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVIS 239
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+ ++ A + G+ + A+K F +M + GL +P+ +T+++++DA
Sbjct: 240 YSTLIDALCKEGMMQMAIKFFVDMT-----------RVGL-LPNEFTYSSLIDANCKAGN 287
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
+ ++ ML + N + ++ G + E + + +A +TP
Sbjct: 288 LGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAG-VTP 340
>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 577
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/313 (20%), Positives = 148/313 (47%), Gaps = 27/313 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD + + +++ + A ++ ++ Q+G +P+ TYG+V+ + G +L +
Sbjct: 188 PDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNL 247
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K++ + I N + Y ++++L + D+A++ +ME +G+ + Y L CLC+
Sbjct: 248 LNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCN 307
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+ +A + + + P VV++ LI A + G + A ++++M K P++ T
Sbjct: 308 YERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT 367
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEM------------------------AEDSNHINREYD 268
+ ++ + H +EA +F+ M ++ + RE
Sbjct: 368 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMS 427
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
++GLV + T+ T++ + D+ ++V+K+M+ G+H N + ++ + GK+
Sbjct: 428 QRGLV-GNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKL 486
Query: 329 ELLEITWEHLARA 341
E + +E+L R+
Sbjct: 487 EKAMVVFEYLQRS 499
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 131/278 (47%), Gaps = 14/278 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP IV +++LN K+ A ++ Q+ + G +P T+ ++ + K +
Sbjct: 152 EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 211
Query: 114 FF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R VQ+ PN + Y V+VN L + G D A + + ME I + +Y + LC
Sbjct: 212 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLC 271
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
++AL ++ +P V++Y+ LI + +A+ + + M + +PN+V
Sbjct: 272 KYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVV 331
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ A+++ G EA KL+ EM I R D PDI+T++++++
Sbjct: 332 TFNALIDAFVKEGKLVEAEKLYDEM------IKRSID------PDIFTYSSLINGFCMHD 379
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
R D+ + +++ M+ N + +I +A +++
Sbjct: 380 RLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRID 417
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 119/262 (45%), Gaps = 22/262 (8%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACG 106
++ P++V +NA+++A V+ + A + ++ ++ P TY G M L
Sbjct: 325 KINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 384
Query: 107 KYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
K+ ++E + K PN + Y L+N + + DE V +M +RG+VG+ Y
Sbjct: 385 KH--MFELM--ISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTT 440
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNF 225
L A C+ A M ++ P +++Y L+ +G ++ A +F + ++
Sbjct: 441 LIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 500
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
P + T NIM++ + G E+ LF ++ KG V PD+ +NTM+
Sbjct: 501 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLS-----------LKG-VKPDVIIYNTMIS 548
Query: 286 ACAAEKRWDDLELVYKRMLHHG 307
+ ++ + ++++M G
Sbjct: 549 GFCRKGLKEEADALFRKMREDG 570
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/306 (20%), Positives = 116/306 (37%), Gaps = 66/306 (21%)
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F V+ +P+ + L++ + + K D +S E M+R GI + Y L C C
Sbjct: 73 FGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCR 132
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM----------- 222
+ AL + K+ K+ +P +V+ + L+ I +A + +QM
Sbjct: 133 RSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTIT 192
Query: 223 -------------------------KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM- 256
+ C PNLVT ++V + G + A L +M
Sbjct: 193 FTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKME 252
Query: 257 -----------------------AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
+D+ ++ E + KG V P++ T+++++ +RW
Sbjct: 253 AAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKG-VRPNVITYSSLISCLCNYERW 311
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLARA---DRITPPAL 349
D + M+ ++ N +I + GK VE ++ E + R+ D T +L
Sbjct: 312 SDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 371
Query: 350 IKERFC 355
I FC
Sbjct: 372 ING-FC 376
>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
Length = 596
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 123/253 (48%), Gaps = 14/253 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP IV +++LN K+ A ++ Q+ + G +P T+ ++ + K +
Sbjct: 114 EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 173
Query: 114 FF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R VQ+ PN + Y V+VN L + G TD A++ + ME I ++ + LC
Sbjct: 174 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLC 233
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
++AL ++ +P VV+Y+ LI G +A+ + + M + +PNLV
Sbjct: 234 KYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 293
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ A+++ G F EA KL+ +M I R D PDI+T+N++++
Sbjct: 294 TFNALIDAFVKEGKFVEAEKLYDDM------IKRSID------PDIFTYNSLVNGFCMHD 341
Query: 292 RWDDLELVYKRML 304
R D + +++ M+
Sbjct: 342 RLDKAKQMFEFMV 354
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 128/280 (45%), Gaps = 14/280 (5%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
++E D+V++N ++++ + + + A + ++++ +G +P+ TY ++ + + G+++
Sbjct: 217 KIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDA 276
Query: 112 YEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ ++K PN + + L++ +EGK EA +DM +R I Y L
Sbjct: 277 SQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNG 336
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPN 229
C + ++A + + P VV+Y LI+ S +++ +F +M + +
Sbjct: 337 FCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 396
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
VT +++ G + A K+F++M D V PDI T++ +LD
Sbjct: 397 TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG------------VPPDIMTYSILLDGLCN 444
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + V+ M + + + MI +AGKV+
Sbjct: 445 NGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 484
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 129/295 (43%), Gaps = 32/295 (10%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLA 104
+ ++ P++V +NA+++A V+ ++ A + + ++ P TY G M L
Sbjct: 285 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRL- 343
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
K ++EF V K P+ + Y L+ + + ++ +M RG+VG Y
Sbjct: 344 -DKAKQMFEFM--VSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 400
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-K 223
L + L G C+ A ++ P +++Y+ L+ ++G ++ A +F+ M K
Sbjct: 401 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 460
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
+ ++ M++ + G ++ LF ++ KG V P++ T+NTM
Sbjct: 461 SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLS-----------LKG-VKPNVVTYNTM 508
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNA-------KRHLRMILDASRAGKVELL 331
+ +++ + + K+M G N+ + HLR D +A EL+
Sbjct: 509 ISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLR---DGDKAASAELI 560
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 98/207 (47%), Gaps = 8/207 (3%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V YN ++ + K+ E + +++ +G TY +++ + G + +
Sbjct: 360 PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV 419
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F++ V P+ + Y +L++ L GK ++A+ + M++ I +Y + +C
Sbjct: 420 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 479
Query: 174 AGKCEEALMQMDKICKVA---NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
AGK ++ D C ++ KP VV+Y +I +Q A + +MK + PN
Sbjct: 480 AGKVDDG---WDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPN 536
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEM 256
T N +++A+L G + +L +EM
Sbjct: 537 SGTYNTLIRAHLRDGDKAASAELIREM 563
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/259 (19%), Positives = 116/259 (44%), Gaps = 14/259 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P IV +N +L+A + K+++ + +++++ TY +++ + +L
Sbjct: 45 PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 104
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y P+ + L+N + +AV+ V+ M G + L L
Sbjct: 105 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 164
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
K EA+ +D++ + +P +V+Y ++ G+ A + N+M+ ++V
Sbjct: 165 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 224
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ + ++ ++A+ LF+EM + KG + P++ T+++++ + R
Sbjct: 225 FNTIIDSLCKYRHVDDALNLFKEM-----------ETKG-IRPNVVTYSSLISCLCSYGR 272
Query: 293 WDDLELVYKRMLHHGLHFN 311
W D + M+ ++ N
Sbjct: 273 WSDASQLLSDMIEKKINPN 291
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 92/242 (38%), Gaps = 48/242 (19%)
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F V+ +P+ + + L++ + + K D +S E M+R IV Y L C C
Sbjct: 35 FGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCR 94
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM----------- 222
+ AL + K+ K+ +P +V+ + L+ I +A + +QM
Sbjct: 95 RSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTIT 154
Query: 223 -------------------------KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
+ C PNLVT ++V + G + A+ L +M
Sbjct: 155 FTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKM- 213
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
+ + D+ FNT++D+ + DD ++K M G+ N +
Sbjct: 214 -----------EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 262
Query: 318 MI 319
+I
Sbjct: 263 LI 264
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 1/173 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L D V Y ++ + A V +Q+ G P TY ++++ + GK
Sbjct: 393 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 452
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F +QKS I + Y ++ + + GK D+ + +G+ + Y + L
Sbjct: 453 EVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 512
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
CS +EA + K+ + P +Y LI+A L G+ +A + +M++
Sbjct: 513 CSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRS 565
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/181 (18%), Positives = 74/181 (40%), Gaps = 17/181 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y + L G +++ +V D M+ ++ DI +Y ++
Sbjct: 430 PDIMTYSILLDGLCNNGKLEKALEVFDYMQK---------------SEIKLDIYIYTTMI 474
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-I 123
+ + + + + L +G KP+ TY ++ + + Y +K+++ +
Sbjct: 475 EGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPL 534
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN+ Y L+ R+G + + +M VG A+ +A L G+ +++ +
Sbjct: 535 PNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANML-HDGRLDKSFLD 593
Query: 184 M 184
M
Sbjct: 594 M 594
>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g41170, mitochondrial; Flags: Precursor
gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 527
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 144/331 (43%), Gaps = 26/331 (7%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M PD V Y +I +L + GH+ + D M E + R PD+V+Y
Sbjct: 171 MGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQM-------------ENYGIR--PDVVMY 215
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQ 119
+++N +W A +L+ + ++ KP T+ +++ + GK+ E + + ++
Sbjct: 216 TSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIR 275
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
S PN Y L+N EG DEA ME +G Y L C K ++
Sbjct: 276 MSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDD 335
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A+ ++ + ++YT LIQ G A +F+ M PN+ T N+++
Sbjct: 336 AMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLH 395
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+G ++A+ +F++M + RE D V P+I+T+N +L + + +
Sbjct: 396 CLCYNGKVKKALMIFEDMQK------REMDG---VAPNIWTYNVLLHGLCYNGKLEKALM 446
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
V++ M + + +I +AGKV+
Sbjct: 447 VFEDMRKREMDIGIITYTIIIQGMCKAGKVK 477
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 105/211 (49%), Gaps = 5/211 (2%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V Y +++N + K+ + A + ++ Q+G + TY +++ GK N+ E
Sbjct: 315 PDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEV 374
Query: 115 F-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA---LYYDLARC 170
F V + PN Y VL++ L GK +A+ EDM++R + G A Y L
Sbjct: 375 FSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHG 434
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
LC GK E+ALM + + K +++YT +IQ +G ++NA +F + PN
Sbjct: 435 LCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPN 494
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
+VT M+ GL EA LF++M ED
Sbjct: 495 VVTYTTMISGLFREGLKHEAHVLFRKMKEDG 525
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/326 (21%), Positives = 135/326 (41%), Gaps = 29/326 (8%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ R P I+ + +LN + K+++ + L+ G T L+M +
Sbjct: 65 ESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPY 124
Query: 110 LVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
L F K+ K + P+ + + L+N + +EA+S V M GI +Y +
Sbjct: 125 LASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTII 184
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
LC G AL D++ +P VV YT L+ +SG ++A + M K
Sbjct: 185 DSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIK 244
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEM------------------------AEDSNHI 263
P+++T N ++ A+++ G F +A +L+ EM +++ +
Sbjct: 245 PDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQM 304
Query: 264 NREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDAS 323
+ KG PD+ + ++++ K+ DD ++ M GL N + +I
Sbjct: 305 FYLMETKG-CFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFG 363
Query: 324 RAGKVELLEITWEHLARADRITPPAL 349
+ GK + + + H+ R PP +
Sbjct: 364 QVGKPNVAQEVFSHM--VSRGVPPNI 387
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 13/154 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y + L G +K+ + + M+ +R + P+I YN +L
Sbjct: 385 PNIRTYNVLLHCLCYNGKVKKALMIFEDMQ------------KREMDGVAPNIWTYNVLL 432
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEFFRKVQKSYI 123
+ + E A V + ++++ TY ++++ M GK N V F K
Sbjct: 433 HGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVK 492
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
PN + Y +++ L+REG EA M+ G+
Sbjct: 493 PNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGV 526
>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 92/375 (24%), Positives = 162/375 (43%), Gaps = 49/375 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ +L +AG I D R L R +P + VYNA++
Sbjct: 212 PDAVTYTTMVSSLCKAGKI-------DDARELAG-------------RFKPSVPVYNALI 251
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + + E A +L ++ G P+ +Y ++ + G L + F ++ +
Sbjct: 252 DGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCD 311
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + L+ + GK EA+ + M + G + Y L LCS G EEAL
Sbjct: 312 ANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQV 371
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
D++ + P V +Y+ LI SG++ A+ +N+M + C PN+VT MV +
Sbjct: 372 CDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCK 431
Query: 243 HGLFEEAMKLFQEMAEDS---NHINREYDKKGL--------------------VIPDIYT 279
+ +F++A L ++M + N I KGL +P+I T
Sbjct: 432 NSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITT 491
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHL 338
+N +LDA ++++ +++ + L N + ++ SRAG + E L++ + L
Sbjct: 492 YNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKAL 551
Query: 339 ARA---DRITPPALI 350
R D IT +I
Sbjct: 552 VRGTAPDSITYNTMI 566
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 119/268 (44%), Gaps = 17/268 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P++ YN +L A + + + A + ++ +G P A TY ++ + GK +
Sbjct: 175 LIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDA- 233
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R++ + P+ Y L++ + +EG+ + A+ + +M G+ + Y + LC
Sbjct: 234 ---RELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLC 290
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
+G E A ++ + ++T LI+ C G + A ++ M ++ C PN+V
Sbjct: 291 VSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVV 350
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
N ++ +G EEA+++ +M ++ +P++ T++ ++D A
Sbjct: 351 AYNTLIHGLCSNGSLEEALQVCDQM------------QRSGCLPNVTTYSILIDGFAKSG 398
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMI 319
+ RM+ HG N + M+
Sbjct: 399 DLVGASETWNRMISHGCRPNVVTYTCMV 426
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 138/307 (44%), Gaps = 31/307 (10%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+P + +YN +L+A + +++ + +K+ G P+ TY ++++ + + + ++
Sbjct: 141 KPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHK 200
Query: 114 FFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG----SAALYYDLA 168
F ++ K P+A+ Y +V++L + GK D+A R + G S +Y L
Sbjct: 201 LFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDA---------RELAGRFKPSVPVYNALI 251
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
+C G+ E A+ + ++ P VVSY+ +I + SGN++ A +F QM C
Sbjct: 252 DGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCD 311
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
N+ T ++K G EA+ L++ M +D P++ +NT++
Sbjct: 312 ANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCE------------PNVVAYNTLIHGL 359
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITW----EHLARADR 343
+ ++ V +M G N + +I +++G + TW H R +
Sbjct: 360 CSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNV 419
Query: 344 ITPPALI 350
+T ++
Sbjct: 420 VTYTCMV 426
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/274 (20%), Positives = 113/274 (41%), Gaps = 23/274 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR---SLP-------------KKKFKTGTLER 48
P+ VAY ++ L G ++E V D M+ LP K G E
Sbjct: 347 PNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASET 406
Query: 49 WDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
W+ + P++V Y +++ + ++ A +++++ +G P+ T+ ++ +
Sbjct: 407 WNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCG 466
Query: 105 CGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ + ++Q +PN Y L++ L+R K +EA +++E R + +
Sbjct: 467 NGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVT 526
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + AG EAL K P ++Y +I A G ++ AA + ++
Sbjct: 527 YNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVS 586
Query: 224 NFCS--PNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
+ P+++T ++ EEAM +
Sbjct: 587 SMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDK 620
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 98/241 (40%), Gaps = 21/241 (8%)
Query: 111 VYEFFRKVQKS--YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
V FF + S + A Y+V++ L RE + D ++ M+ GI L+ +
Sbjct: 57 VLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICII 116
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
G E+AL +I + KP V Y L+ A L Q ++ M K+
Sbjct: 117 NGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLI 176
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE------------------DSNHINREYDK 269
PN+ T NI++KA ++ + A KLF EM+ + I+ +
Sbjct: 177 PNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL 236
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
G P + +N ++D E R + + M+ +G+ N + +I +G VE
Sbjct: 237 AGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVE 296
Query: 330 L 330
L
Sbjct: 297 L 297
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 87/207 (42%), Gaps = 17/207 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T+ + + L G ++ +++ M+ G L P+I YN +L
Sbjct: 452 PNTITFNTFIKGLCGNGRVEWAMKLLERMQG-------HGCL--------PNITTYNELL 496
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+A R ++E AF + Q+++ + +P+ TY V+ G + F K + +
Sbjct: 497 DALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTA 556
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMER-RGIVGSAALYYDLARCLCSAGKCEEALM 182
P+++ Y +++ ++GK A VE + + Y L C+ EEA+
Sbjct: 557 PDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMA 616
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDS 209
+DK P ++ L++ DS
Sbjct: 617 FLDKAINQGICPNFATWNALVRCFFDS 643
>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
Length = 715
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 134/299 (44%), Gaps = 30/299 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y + + ++ + +V+D MR+ K T P+IV YN ++
Sbjct: 209 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRA------KGCT---------PNIVTYNVII 253
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N R + + A L +L G +P +Y V++ + A ++ V E F ++ +K+ +
Sbjct: 254 NGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCM 313
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + +LV R G + A+ +E M G + L + +C G+ ++A
Sbjct: 314 PNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQF 373
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + P +SYT +++ + ++A + +M + C PN VT N + +
Sbjct: 374 LNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQ 433
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD-LELVY 300
GL E+A L ++M+E +N I T+N +++ + R D LEL Y
Sbjct: 434 KGLIEQATMLIEQMSEHGCEVN------------IVTYNALVNGFCVQGRVDSALELFY 480
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 89/376 (23%), Positives = 173/376 (46%), Gaps = 43/376 (11%)
Query: 1 MSSY---PDTVAYRSIAVTLGQAGH---IKELFDVIDSMRSLPKK-------KF--KTGT 45
+SSY PDTV+Y ++ L A ++ELF + +P + +F + G
Sbjct: 272 LSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGM 331
Query: 46 LERWDPRLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGL 97
+ER LE + + N V+N ++ + + AF L + G P +Y
Sbjct: 332 VERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTT 391
Query: 98 VMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
V++ + ++ E ++ V+K+ PN + + + L ++G ++A +E M G
Sbjct: 392 VLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG 451
Query: 157 IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
+ Y L C G+ + AL + + KP ++YT L+ ++ + AA
Sbjct: 452 CEVNIVTYNALVNGFCVQGRVDSAL---ELFYSMPCKPNTITYTTLLTGLCNAERLDAAA 508
Query: 217 YIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
+ +M + C+PN+VT N++V + + GL +EA++L ++M E P
Sbjct: 509 ELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG------------CTP 556
Query: 276 DIYTFNTMLDACAAEKRWDD-LELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEIT 334
++ T+NT+LD + ++ LEL++ ++ +G+ + + +I SR +VE I
Sbjct: 557 NLITYNTLLDGITKDCNSEEALELLHG-LVSNGVSPDIVTYSSIIGVLSREDRVE-EAIK 614
Query: 335 WEHLARADRITPPALI 350
H+ + + P A+I
Sbjct: 615 MFHIVQDLGMRPKAVI 630
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/276 (20%), Positives = 105/276 (38%), Gaps = 50/276 (18%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+ + ++ RR + A VL+ ++ G Y ++ G+ +
Sbjct: 107 PDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRL 166
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ + P+A Y ++ L G+ EA+S ++DM RG
Sbjct: 167 IASMPVA--PDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGC----------------- 207
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTC 233
+P VV+YT L++A S A + ++M+ C+PN+VT
Sbjct: 208 ------------------QPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTY 249
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N+++ G ++A + ++ PD ++ T+L A KRW
Sbjct: 250 NVIINGMCREGRVDDAREFLNRLSSYGFQ------------PDTVSYTTVLKGLCAAKRW 297
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+D+E ++ M+ N ++ R G VE
Sbjct: 298 EDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVE 333
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/306 (20%), Positives = 123/306 (40%), Gaps = 32/306 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V + + L Q G I++ +I+ M + E +IV YNA++
Sbjct: 419 PNEVTFNTFICILCQKGLIEQATMLIEQMS---------------EHGCEVNIVTYNALV 463
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + + + A L+ KP+ TY ++ + + + E + +QK
Sbjct: 464 NGFCVQGRVDSA---LELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCA 520
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + VLV+ ++G DEA+ VE M G + Y L + EEAL
Sbjct: 521 PNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALEL 580
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ + P +V+Y+ +I ++ A +F+ +++ P V N ++ A +
Sbjct: 581 LHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCK 640
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ A+ F M + +P+ T+ T+++ A E + + +
Sbjct: 641 RCNTDGAIDFFAYMVSNG------------CMPNELTYITLIEGLANEDFLKETRDLLRE 688
Query: 303 MLHHGL 308
+ G+
Sbjct: 689 LCSRGV 694
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PDIV Y++++ R + E A + ++ G +P A Y ++ + +
Sbjct: 589 VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 648
Query: 113 EFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+FF V +PN L Y L+ L E E + ++ RG++
Sbjct: 649 DFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGVL 695
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 72/196 (36%), Gaps = 32/196 (16%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V + + Q G + E ++++ M + P+++ YN +L
Sbjct: 521 PNVVTFNVLVSFFCQKGLMDEAIELVEQM---------------MEHGCTPNLITYNTLL 565
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + E A +L L G P TY ++ V+ + + F VQ +
Sbjct: 566 DGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMR 625
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY----------------DL 167
P A+ Y ++ L + TD A+ M G + + Y DL
Sbjct: 626 PKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDL 685
Query: 168 ARCLCSAGKCEEALMQ 183
R LCS G + L++
Sbjct: 686 LRELCSRGVLNKNLLE 701
>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g31400, chloroplastic; Flags: Precursor
gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
Length = 918
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 131/285 (45%), Gaps = 30/285 (10%)
Query: 5 PDTVAYRSIAVTLGQAG-HIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
P+ V Y ++ G+ G K++ D M+ + G ++PD + +N++
Sbjct: 301 PNLVTYNAVIDACGKGGMEFKQVAKFFDEMQ-------RNG--------VQPDRITFNSL 345
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSY 122
L C R WE A + ++ + + +Y +++ + G+ +L +E ++ K
Sbjct: 346 LAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRI 405
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+PN ++Y +++ + G+ DEA++ +M GI Y L G+ EEAL
Sbjct: 406 MPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALD 465
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYL 241
+ ++ V K VV+Y L+ G +F +MK PNL+T + ++ Y
Sbjct: 466 ILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYS 525
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+ GL++EAM++F RE+ GL D+ ++ ++DA
Sbjct: 526 KGGLYKEAMEIF-----------REFKSAGLR-ADVVLYSALIDA 558
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 134/318 (42%), Gaps = 42/318 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V+Y ++ +AG E ++ MR L + D V YN +L
Sbjct: 407 PNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLG---------------IALDRVSYNTLL 451
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + E A +L+++ G K TY ++ GKY+ V + F ++++ ++
Sbjct: 452 SIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVL 511
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN L Y L++ + G EA+ + + G+ LY L LC G A+
Sbjct: 512 PNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSL 571
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAA-YIFNQMKNFCSPNLVTCNIMVKAYLE 242
+D++ K P VV+Y +I A S + +A Y F S L + L
Sbjct: 572 IDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSAL--------SALT 623
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGL-----------------VIPDIYTFNTMLD 285
++LF ++ +SN+ + ++G+ + P++ TF+ +L+
Sbjct: 624 ETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAILN 683
Query: 286 ACAAEKRWDDLELVYKRM 303
AC+ ++D ++ + +
Sbjct: 684 ACSRCNSFEDASMLLEEL 701
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 14/192 (7%)
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
C K YEF K ++ +++TL R GK A E G + +
Sbjct: 212 CDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAF 271
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG-NIQNAAYIFNQM- 222
L +G EEA+ + + + +P +V+Y +I AC G + A F++M
Sbjct: 272 SALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQ 331
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+N P+ +T N ++ GL+E A LF EM NR ++ D++++NT
Sbjct: 332 RNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMT------NRRIEQ------DVFSYNT 379
Query: 283 MLDACAAEKRWD 294
+LDA + D
Sbjct: 380 LLDAICKGGQMD 391
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 19/155 (12%)
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGL-FEEAMKLF 253
V +++ LI A SG + A +FN MK + PNLVT N ++ A + G+ F++ K F
Sbjct: 268 VYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFF 327
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK 313
EM + V PD TFN++L C+ W+ ++ M + + +
Sbjct: 328 DEMQRNG------------VQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVF 375
Query: 314 RHLRMILDASRAGKVELLEITWEHLAR--ADRITP 346
+ ++ + G+++L +E LA+ RI P
Sbjct: 376 SYNTLLDAICKGGQMDL---AFEILAQMPVKRIMP 407
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P++V ++A+LNAC R +E A +L++L+ K +GL+M G+ V+
Sbjct: 671 IKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLM------GQRENVW 724
Query: 113 ----EFFRKVQKSYIPNALA-YKVLVNTLWREGKTDEA-VSAVEDMERR 155
F KV + A A Y L + LW G+ A + A+E R+
Sbjct: 725 LQAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEGRSRQ 773
>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
Length = 696
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 131/281 (46%), Gaps = 14/281 (4%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D + P+ YN++++ + QW A +L+++ + GQ+P+ TY ++++ + G +
Sbjct: 315 DEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHA 374
Query: 110 LVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
E F +Q PNA Y L++ EG + + + M + G+ ++
Sbjct: 375 EAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEI 434
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
C G+ +EA + +K+ + P +V+YT +I G + +A F QM + S
Sbjct: 435 YAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLS 494
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P+++T N ++ + HG +E+A +LF EM + + P++ TFN+M+D
Sbjct: 495 PDIITFNTLIHGFALHGKWEKAEELFYEMMDRG------------IPPNVNTFNSMIDKL 542
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
E + + ++ M G N + MI AG+V
Sbjct: 543 FKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEV 583
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 128/294 (43%), Gaps = 14/294 (4%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D + P++V N+V++ + + + A VLQQ+ + P+ TTY ++ L+ G++
Sbjct: 280 DHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWT 339
Query: 110 LVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
+++ + PN + Y +L++ L + G EA M + G +A+ Y L
Sbjct: 340 EAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLL 399
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCS 227
+ G + D + + +P + I A G + A+ FN+M+
Sbjct: 400 HGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFM 459
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P++V ++ + G ++AM F +M +D + PDI TFNT++
Sbjct: 460 PDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDG------------LSPDIITFNTLIHGF 507
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
A +W+ E ++ M+ G+ N MI + GKV ++ + RA
Sbjct: 508 ALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRA 561
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 125/295 (42%), Gaps = 46/295 (15%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM--------------- 99
P++V Y+ +++ + A + + Q GQKP+A+TYG ++
Sbjct: 355 PNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNV 414
Query: 100 -EVML-------------------ACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWR 138
++M+ CG+ + F K+Q+ ++P+ +AY +++ L +
Sbjct: 415 KDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCK 474
Query: 139 EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
G+ D+A+S M G+ + L GK E+A ++ P V +
Sbjct: 475 IGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNT 534
Query: 199 YTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM- 256
+ +I G + A +F+ M + PN+V+ N M+ Y G E MKL +M
Sbjct: 535 FNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDML 594
Query: 257 -------AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
A N + GL PD+ T T++D+C + R +D+ +++ ML
Sbjct: 595 LIGLKPTAVTFNTLLDGMVSMGLK-PDVVTCKTLIDSCCEDGRIEDILTLFREML 648
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 96/228 (42%), Gaps = 19/228 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE- 113
PDIV Y V++ + + + A Q+ G P T+ ++ GK+ E
Sbjct: 460 PDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEEL 519
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F+ + + PN + +++ L++EGK EA + M R G + Y +
Sbjct: 520 FYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFI 579
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTC 233
AG+ E + +D + + KP V++ L+ + G P++VTC
Sbjct: 580 AGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMG---------------LKPDVVTC 624
Query: 234 NIMVKAYLEHGLFEEAMKLFQEM---AEDSNHINREYDKKGLVIPDIY 278
++ + E G E+ + LF+EM A+ ++ I +G+ + Y
Sbjct: 625 KTLIDSCCEDGRIEDILTLFREMLGKADKTDTITENIKLRGVTVKASY 672
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 15/172 (8%)
Query: 145 AVSAVEDMERRG---IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
AVS M R G + A + L C C AG + +I K + V++T
Sbjct: 125 AVSMFNRMARAGAKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTP 184
Query: 202 LIQA-CLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
L++ C + + +M C+P++ + ++K EEA +L MAED
Sbjct: 185 LLRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAED 244
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
++ P++ ++ T++ E ++ +ML HG+ N
Sbjct: 245 GDNCP----------PNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPN 286
>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
Length = 629
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/348 (21%), Positives = 156/348 (44%), Gaps = 31/348 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V S+ + I + ++D M + K PD V +N ++
Sbjct: 148 PDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYK---------------PDTVTFNTLI 192
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + A ++ Q+ Q+G +P TYG V+ + G +L +K++K I
Sbjct: 193 HGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIE 252
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y +++ L + D+A + ME +GI Y L CLC+ G+ +A
Sbjct: 253 ADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRL 312
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + + P VV+++ LI A + G + A ++++M K P++ T + ++ +
Sbjct: 313 LSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM 372
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
H +EA +F+ M I+++ P++ T+NT++ KR ++ +++
Sbjct: 373 HDRLDEAKHMFELM------ISKD------CFPNVVTYNTLIKGFCKAKRVEEGMELFRE 420
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
M GL N + +I +AG ++ + ++ + +D + PP +I
Sbjct: 421 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMV-SDGV-PPDII 466
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 82/348 (23%), Positives = 146/348 (41%), Gaps = 42/348 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ L + G I D SL KK K ++E D+V+YN ++
Sbjct: 218 PDLVTYGAVVNGLCKRGDI-------DLALSLLKKMEKG--------KIEADVVIYNTII 262
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + K + AF + +++ +G +P TY ++ + G+++ +++
Sbjct: 263 DGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKIN 322
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + L++ +EGK EA ++M +R I Y L C + +EA
Sbjct: 323 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + P VV+Y LI+ + ++ +F +M + N VT N +++ +
Sbjct: 383 FELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 442
Query: 243 HGLFEEAMKLFQEMAEDS-----------------------NHINREYDKKGLVIPDIYT 279
G + A K+F++M D + EY +K + PDIYT
Sbjct: 443 AGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYT 502
Query: 280 FNTMLDA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+N M++ C A K D +L L G+ N + MI R G
Sbjct: 503 YNIMIEGMCKAGKVEDGWDLFCSLSL-KGVKPNVIIYTTMISGFCRKG 549
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 133/315 (42%), Gaps = 49/315 (15%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NL 110
R+ D+ YN ++N RR Q A VL ++ + G +P T ++ + +
Sbjct: 110 RISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 169
Query: 111 VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
V + V+ Y P+ + + L++ L+ K EAV+ V+ M +RG Y +
Sbjct: 170 VALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNG 229
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN------ 224
LC G + AL + K+ K + VV Y +I +I +A +FN+M+
Sbjct: 230 LCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPD 289
Query: 225 ----------FC--------------------SPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
C +PN+VT + ++ A+++ G EA KL+
Sbjct: 290 VFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 349
Query: 255 EMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKR 314
EM I R D PDI+T++++++ R D+ + +++ M+ N
Sbjct: 350 EM------IKRSID------PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT 397
Query: 315 HLRMILDASRAGKVE 329
+ +I +A +VE
Sbjct: 398 YNTLIKGFCKAKRVE 412
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 74/342 (21%), Positives = 135/342 (39%), Gaps = 77/342 (22%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL-------ERW------- 49
D V Y +I L + HI + F + + M + + F +L RW
Sbjct: 254 DVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLL 313
Query: 50 ----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVME 100
+ ++ P++V ++A+++A V+ + A + ++ ++ P TY G M
Sbjct: 314 SNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMH 373
Query: 101 VMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
L K+ ++E + K PN + Y L+ + + +E + +M +RG+VG+
Sbjct: 374 DRLDEAKH--MFELM--ISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGN 429
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y L + L AG C+ A K+ P +++Y+ L+ G ++ A +F
Sbjct: 430 TVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFE 489
Query: 221 QMKN-----------------------------FCS-------PNLVTCNIMVKAYLEHG 244
++ FCS PN++ M+ + G
Sbjct: 490 YLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKG 549
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
L EEA LF+EM ED +PD +NT++ A
Sbjct: 550 LKEEADALFREMKEDGT------------LPDSGCYNTLIRA 579
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 138/331 (41%), Gaps = 39/331 (11%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
NA+LN + + A + ++ Q PS + ++ + K++LV ++Q
Sbjct: 54 NALLNL-----KLDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQN 108
Query: 121 SYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
I L +Y +L+N R + A++ + M + G L C + + +
Sbjct: 109 LRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISD 168
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A+ +D++ ++ KP V++ LI A + +QM + C P+LVT +V
Sbjct: 169 AVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVN 228
Query: 239 AYLEHGLFEEAMKLFQEMAEDS------------------NHINREY------DKKGLVI 274
+ G + A+ L ++M + HI+ + + KG +
Sbjct: 229 GLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKG-IR 287
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK-VELLEI 333
PD++T+N+++ RW D + M+ ++ N +I + GK VE ++
Sbjct: 288 PDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKL 347
Query: 334 TWEHLARA---DRITPPALIKERFC--NRLE 359
E + R+ D T +LI FC +RL+
Sbjct: 348 YDEMIKRSIDPDIFTYSSLING-FCMHDRLD 377
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 149/343 (43%), Gaps = 28/343 (8%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P+ V Y ++ +A ++E +++ MR ER P P++V Y
Sbjct: 51 MGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMR------------ERGCP---PNLVTY 95
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQ 119
N +++A + A V++++ + G P+ T+ +++ G + + V
Sbjct: 96 NVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVA 155
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K PN + Y L++ L + K EA +E+M+ G+ A Y L LC A K EE
Sbjct: 156 KGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEE 215
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A + ++ P VV Y+ +I A SG + A +M K SP++VT N ++
Sbjct: 216 AEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVID 275
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G EA + +M E G V+PD+ T++T+++ + +
Sbjct: 276 GLCKLGKIAEAQVILDQMQE-----------SGDVLPDVVTYSTVINGLCKSDMLVEAQK 324
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
+ RM G + + + +I + G++E E + + RA
Sbjct: 325 LLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRA 367
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 117/252 (46%), Gaps = 13/252 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+VVY+++++A + + A LQ++++Q + P TY V++ + GK
Sbjct: 230 PDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVI 289
Query: 115 FRKVQKS--YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++Q+S +P+ + Y ++N L + EA ++ M + G Y + LC
Sbjct: 290 LDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLC 349
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLV 231
G+ EEA + + + P VV+YT LI + + A + +M+N C PNLV
Sbjct: 350 KCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLV 409
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N MV G +EA +L Q M D + PD T+ T+++A +
Sbjct: 410 TYNTMVNGLCVSGRIKEAQQLVQRMK----------DGRAECSPDAATYRTIVNALMSSD 459
Query: 292 RWDDLELVYKRM 303
+ E + ++M
Sbjct: 460 LVQEAEQLLEQM 471
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 116/260 (44%), Gaps = 26/260 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y SI ++G + E + MR R PD+V YN V+
Sbjct: 230 PDVVVYSSIIHAFCKSGKLLEAQKTLQEMRK---------------QRKSPDVVTYNTVI 274
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQK-PSATTYGLVMEVMLACGKYNLVYE----FFRKVQ 119
+ + + A +L Q+++ G P TY V+ + K +++ E R +
Sbjct: 275 DGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLC---KSDMLVEAQKLLDRMCK 331
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
P+ + Y +++ L + G+ +EA ++ M+R G + Y L LC A K +E
Sbjct: 332 AGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDE 391
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF---CSPNLVTCNIM 236
A M+++ P +V+Y ++ SG I+ A + +MK+ CSP+ T +
Sbjct: 392 AERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTI 451
Query: 237 VKAYLEHGLFEEAMKLFQEM 256
V A + L +EA +L ++M
Sbjct: 452 VNALMSSDLVQEAEQLLEQM 471
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/247 (20%), Positives = 107/247 (43%), Gaps = 18/247 (7%)
Query: 106 GKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G + E +++ + + P+A + ++ + G D A+ + M G + Y
Sbjct: 4 GDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM---GCDPNVVTY 60
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-K 223
L A K EEA+ ++++ + P +V+Y L+ A + A + +M +
Sbjct: 61 TALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIE 120
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
+PN++T N +V + + G ++A KL M KG+ P++ T++ +
Sbjct: 121 GGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMV-----------AKGMR-PNVVTYSAL 168
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADR 343
+D +++ + + V + M G+ +A + +I +A K+E E +A
Sbjct: 169 IDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMA-GSG 227
Query: 344 ITPPALI 350
TP ++
Sbjct: 228 CTPDVVV 234
>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
Length = 798
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 145/327 (44%), Gaps = 36/327 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKT--GTL------ERWDPRL--- 53
PD V Y ++ V L + G E V DSM K + GTL E + ++
Sbjct: 274 PDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQL 333
Query: 54 ---------EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+PD ++N ++ A + + A +++QQG P+ TYG VM+ +
Sbjct: 334 LDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCR 393
Query: 105 CGKY-NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK + + +F R + + PN + ++ L++ L K D+A +M RGI +
Sbjct: 394 VGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIF 453
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQM 222
+ L LC G A D + +V + V++YT LI CLD G + A + M
Sbjct: 454 FNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLD-GKVDEATKLLEGM 512
Query: 223 K-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
+ PN VT N ++ Y ++G E+A LF++MA KG V P I ++
Sbjct: 513 VLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMAS-----------KG-VNPGIVIYS 560
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGL 308
T+L +R + +Y M+ G+
Sbjct: 561 TILHGLFQTRRIAAAKELYLWMIKCGI 587
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 110/259 (42%), Gaps = 47/259 (18%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V Y V+N +R Q + A+ + ++ QG P+ TY ++ + GK
Sbjct: 204 PDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGI 263
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
FRK+ + + P+ + Y L+ L + G++ EA + M ++G +++Y L +
Sbjct: 264 FRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYAT 323
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTC 233
G L+QM ++ V ++N P+
Sbjct: 324 EGY----LVQMHQLLDV------------------------------MVRNGTQPDHYIF 349
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
NI++ AY +HG+ +EAM F +M + H P+I T+ T++DA +
Sbjct: 350 NILIGAYAKHGMVDEAMLAFSKMRQQGLH------------PNIVTYGTVMDALCRVGKV 397
Query: 294 DDLELVYKRMLHHGLHFNA 312
DD + R++ GL N
Sbjct: 398 DDAMSQFDRLISEGLTPNG 416
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 118/280 (42%), Gaps = 23/280 (8%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P+IV Y V++A R + + A +L +G P+ + ++ + AC K++
Sbjct: 377 LHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAE 436
Query: 113 EF-FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E + + PN + + L+N L +EG A + + M R + Y L
Sbjct: 437 ELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGY 496
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV 231
C GK +EA ++ + KP V+Y +I +G I++A +F QM + V
Sbjct: 497 CLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQM----ASKGV 552
Query: 232 TCNIMVKAYLEHGLFEE-----AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
I++ + + HGLF+ A +L+ M K G+ +P I T+N +L
Sbjct: 553 NPGIVIYSTILHGLFQTRRIAAAKELYLWMI-----------KCGIKLP-IGTYNIILQG 600
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
DD ++ + H R +++DA G
Sbjct: 601 LCQNNCTDDALRMFHNLCLIDFHLQ-NRTFNIMIDALLKG 639
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/348 (20%), Positives = 138/348 (39%), Gaps = 36/348 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR-------------------SLPKKKFKTGT 45
PD V+Y ++ L + G + + + + D M S K K G
Sbjct: 204 PDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGI 263
Query: 46 LERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ +EPD+V YN ++ + + A V + ++G KP ++ YG ++
Sbjct: 264 FRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYAT 323
Query: 105 CGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G +++ V+ P+ + +L+ + G DEA+ A M ++G+ +
Sbjct: 324 EGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVT 383
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y + LC GK ++A+ Q D++ P V + LI A + +M
Sbjct: 384 YGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMI 443
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
+ C PN + N ++ + G+ A +F M V D+ T+
Sbjct: 444 GRGIC-PNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVD------------VQCDVITYT 490
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
T++D + + D+ + + M+ G+ N + +I + G++E
Sbjct: 491 TLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIE 538
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 48/242 (19%), Positives = 100/242 (41%), Gaps = 17/242 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T+ + ++ L + G + ++ D M R D ++ D++ Y ++
Sbjct: 449 PNTIFFNTLLNHLCKEGMVTRAKNIFDLM-------------VRVD--VQCDVITYTTLI 493
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + + A +L+ + G KP+ TY ++ G+ FR++ K
Sbjct: 494 DGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVN 553
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y +++ L++ + A M + GI Y + + LC ++AL
Sbjct: 554 PGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRM 613
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQMKNFCSPNLVTCNIMVKAYLE 242
+C + ++ +I A L G A +F + + PN+VT +M+K+ +E
Sbjct: 614 FHNLCLIDFHLQNRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIE 673
Query: 243 HG 244
G
Sbjct: 674 QG 675
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 60/144 (41%), Gaps = 10/144 (6%)
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMKNF-CS 227
C AG + A + ++ + ++++ L++ C D +M C+
Sbjct: 105 CCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMDIALRRMPALGCT 164
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
PN + NI++K + ++A+ L M D D +G PD+ ++ T+++
Sbjct: 165 PNAFSYNILLKGLCDENRSQQALHLLHTMMAD--------DTRGGCPPDVVSYTTVINGL 216
Query: 288 AAEKRWDDLELVYKRMLHHGLHFN 311
E + D ++ ML G+ N
Sbjct: 217 LREGQLDKAYCLFDEMLDQGMSPN 240
>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 874
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/359 (20%), Positives = 157/359 (43%), Gaps = 44/359 (12%)
Query: 12 SIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRK 71
S+ ++ HI + F +RS +F P +P I +YN +L +C+R +
Sbjct: 80 SVVSIFAKSNHIDKAFPQFQFVRS----RF---------PENKPGIYLYNVLLESCIRER 126
Query: 72 QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIPNALAYK 130
+ E W+ + + G P T+ L++ + + E F ++ +K PN +
Sbjct: 127 RVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFG 186
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
+LV + G TD+ + + ME G++ + +Y + C G+ +++ ++K+ +
Sbjct: 187 ILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKMREE 246
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-----NFCSPNLVTCNIMVKAYLEHGL 245
P +V++ I A G + +A+ IF+ M+ PN +T N+M+K + + GL
Sbjct: 247 GLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGL 306
Query: 246 FEEAMKLFQEMAEDSNHIN------------------------REYDKKGLVIPDIYTFN 281
E+A LF+ + E+ + ++ ++ KG + P IY++N
Sbjct: 307 LEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEAETVLKQMIDKG-IGPSIYSYN 365
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
++D D + + M +G+ +A + ++ GKV+ + + + R
Sbjct: 366 ILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMR 424
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/340 (20%), Positives = 146/340 (42%), Gaps = 30/340 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + S L + G V+D+ R F L+ + P+ + YN +L
Sbjct: 250 PDIVTFNSRISALCKEGK------VLDASRI-----FSDMELDEYLGLPRPNSITYNLML 298
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ E A + + +++ S +Y + ++ ++ GK+ ++ + K
Sbjct: 299 KGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEAETVLKQMIDKGIG 358
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ +Y +L++ L + G +A + V M+R G+ A Y L CS GK + A
Sbjct: 359 PSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSL 418
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
+ ++ + P + L+ + + G I A + +M K + + VTCNI+V
Sbjct: 419 LQEMMRNNCLPNAYTCNILLHSLWNMGRISEAEELLRKMNEKGY-GLDTVTCNIIVDGLC 477
Query: 242 EHGLFEEAMKLFQEM----AEDSNHINREYDKKGLV---------IPDIYTFNTMLDACA 288
G ++A+++ + M + ++ Y GLV +PD+ T++T+L+
Sbjct: 478 GSGELDKAIEIVKGMRVHGSAALGNLGNSY--IGLVDDSLIENNCLPDLITYSTLLNGLC 535
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
R+ + + ++ M+ L ++ + I + GK+
Sbjct: 536 KAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQGKI 575
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 97/221 (43%), Gaps = 13/221 (5%)
Query: 90 PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSA 148
P TY ++ + G++ F ++ + P++LAY + ++ ++GK A
Sbjct: 522 PDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQGKISSAFRV 581
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
++DME++G S Y L L + E MD++ + P + +Y IQ +
Sbjct: 582 LKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMREKGISPNICTYNTAIQYLCE 641
Query: 209 SGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
G +++A + ++M KN +PN+ + ++ A+ + F+ A ++F+
Sbjct: 642 GGKVEDATNLLDEMMQKNI-APNVFSFKYLIGAFCKVPDFDMAQEVFETAVSICGQ---- 696
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
K+GL FN +L A K + LE V R G
Sbjct: 697 --KEGLY---SLMFNELLAAGQLLKATELLEAVLDRGFELG 732
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 103/258 (39%), Gaps = 9/258 (3%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMR---SLPKKKFKTGTLERWDPRL-----EPDI 57
DTV I L +G + + +++ MR S + D L PD+
Sbjct: 465 DTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDL 524
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
+ Y+ +LN + ++ A + ++ + +P + Y + + GK + + +
Sbjct: 525 ITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQGKISSAFRVLKD 584
Query: 118 VQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
++K +L Y L+ L + + E +++M +GI + Y + LC GK
Sbjct: 585 MEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMREKGISPNICTYNTAIQYLCEGGK 644
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIM 236
E+A +D++ + P V S+ LI A + A +F + C ++M
Sbjct: 645 VEDATNLLDEMMQKNIAPNVFSFKYLIGAFCKVPDFDMAQEVFETAVSICGQKEGLYSLM 704
Query: 237 VKAYLEHGLFEEAMKLFQ 254
L G +A +L +
Sbjct: 705 FNELLAAGQLLKATELLE 722
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 22/172 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ L +AG E KT E +L+PD + YN +
Sbjct: 522 PDLITYSTLLNGLCKAGRFAEA---------------KTLFAEMMGEKLQPDSLAYNIFI 566
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV----QK 120
+ ++ + AF VL+ ++++G S TY ++L G N ++E + +K
Sbjct: 567 HHFCKQGKISSAFRVLKDMEKKGCHKSLETYN---SLILGLGIKNQIFEIHGLMDEMREK 623
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
PN Y + L GK ++A + +++M ++ I + + L C
Sbjct: 624 GISPNICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAFC 675
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 15/172 (8%)
Query: 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACV 68
Y S+ + LG I E+ ++D MR + + P+I YN +
Sbjct: 596 TYNSLILGLGIKNQIFEIHGLMDEMR---------------EKGISPNICTYNTAIQYLC 640
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALA 128
+ E A +L ++ Q+ P+ ++ ++ +++ E F
Sbjct: 641 EGGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAFCKVPDFDMAQEVFETAVSICGQKEGL 700
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
Y ++ N L G+ +A +E + RG LY DL LC + E A
Sbjct: 701 YSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVVSLCKKDELEVA 752
>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Vitis vinifera]
Length = 582
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 121/265 (45%), Gaps = 14/265 (5%)
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+E + EPD+ YNAV++ + + E A VL ++K +G P TY +++ +
Sbjct: 125 VMEILESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCN 184
Query: 105 CGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
K L + ++ + +P + Y +L+ EG +EA+ +E+M RG++
Sbjct: 185 RRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYT 244
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y + R +C G E A + + KP V+SY L++A L+ G + +M
Sbjct: 245 YNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMF 304
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
C PN VT +I++ + G +EA+ + + M E + PD Y+++
Sbjct: 305 SRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKE------------LTPDTYSYDP 352
Query: 283 MLDACAAEKRWDDLELVYKRMLHHG 307
++ A E R D + M+ +G
Sbjct: 353 LISALCKEGRLDLAIGIMDYMISNG 377
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 138/317 (43%), Gaps = 32/317 (10%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN--- 109
L PD+ YNA++ + E A ++ L +G KP +Y +++ L GK++
Sbjct: 238 LLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGE 297
Query: 110 -LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
LV E F + + PN + Y +L+++L R G+ DEA+S ++ M + + Y L
Sbjct: 298 KLVAEMFSRGCE---PNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLI 354
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CS 227
LC G+ + A+ MD + P +V+Y ++ A +GN A IFN+++ C
Sbjct: 355 SALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCP 414
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKGLV------ 273
PN+ + N M+ A G A+ + M N + + GLV
Sbjct: 415 PNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGL 474
Query: 274 ---------IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASR 324
P + ++N +L +R DD ++ M+ G N ++ +I
Sbjct: 475 LDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGF 534
Query: 325 AG-KVELLEITWEHLAR 340
AG + E +E+ +R
Sbjct: 535 AGWRTEAMELANSLFSR 551
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 105/250 (42%), Gaps = 17/250 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y + +L + G I E V+ M + L PD Y+ ++
Sbjct: 310 PNKVTYSILISSLCRFGRIDEAISVLKVM---------------IEKELTPDTYSYDPLI 354
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+A + + + A ++ + G P Y ++ + G N E F K++
Sbjct: 355 SALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCP 414
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN +Y +++ LW G A+ V M +G+ Y L CLC G EEA+
Sbjct: 415 PNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGL 474
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+D + + +P V+SY ++ I +A +F +M + C PN T ++++
Sbjct: 475 LDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGF 534
Query: 243 HGLFEEAMKL 252
G EAM+L
Sbjct: 535 AGWRTEAMEL 544
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 118/278 (42%), Gaps = 33/278 (11%)
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY 122
+LN + ++ + + L+ L +G P +++ L G +N F+ ++K+
Sbjct: 74 LLNRSCKAGKFNESLYFLECLVNKGYTPD-----VILCTKLIKGFFN-----FKNIEKAS 123
Query: 123 I----------PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
P+ AY +++ + + + A + M+ RG + Y + LC
Sbjct: 124 RVMEILESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLC 183
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
+ K AL +D++ P V++YT LI+A + G I A + +M P++
Sbjct: 184 NRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMY 243
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N +++ + G+ E A +L + KG PD+ ++N +L A +
Sbjct: 244 TYNAIIRGMCKEGMVERAAELITSLTS-----------KG-CKPDVISYNILLRAFLNQG 291
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+WD+ E + M G N + +I R G+++
Sbjct: 292 KWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRID 329
>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 141/309 (45%), Gaps = 32/309 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD V + ++ L + E ++ M ++ P++V + +
Sbjct: 146 HPDVVTFNTLLHGLCVEDRVSEALNLFHQM---------------FETTCRPNVVTFTTL 190
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK--S 121
+N R + A +L ++ + G +P+ TYG +++ M G + RK+++
Sbjct: 191 MNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISH 250
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
IPN + Y ++++L ++G+ +A + +M+ +GI Y + CS+G+ +A
Sbjct: 251 IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAE 310
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
+ ++ + P VV+Y LI A + G A ++++M PN +T + M+ +
Sbjct: 311 QLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGF 370
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD-LELV 299
+ + A +F MA KG P++ TFNT++D KR DD +EL+
Sbjct: 371 CKQNRLDAAEHMFYLMA-----------TKGCS-PNLITFNTLIDGYCGAKRIDDGMELL 418
Query: 300 YKRMLHHGL 308
++ M GL
Sbjct: 419 HE-MTETGL 426
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/339 (20%), Positives = 141/339 (41%), Gaps = 40/339 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD Y S+ V +G + ++ M LER ++ PD+V YNA+
Sbjct: 287 FPDLFTYNSMIVGFCSSGRWSDAEQLLQEM------------LER---KISPDVVTYNAL 331
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV-YEFFRKVQKSY 122
+NA V+ ++ A + ++ +G P+ TY +++ + + + F+ K
Sbjct: 332 INAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGC 391
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN + + L++ + D+ + + +M G+V Y L G AL
Sbjct: 392 SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALD 451
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK------------NFCSPNL 230
+ ++ P +V+ L+ D+G +++A +F M+ N P++
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDV 511
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T NI++ + G F EA +L++EM ++PD T+++M+D +
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRG------------IVPDTITYSSMIDGLCKQ 559
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
R D+ ++ M N +I +AG+V+
Sbjct: 560 SRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/318 (21%), Positives = 146/318 (45%), Gaps = 22/318 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P +V + ++ VR ++ + + Q+++++ + ++ ++++ +C K
Sbjct: 77 PSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALST 136
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F K+ K + P+ + + L++ L E + EA++ M + + L LC
Sbjct: 137 FGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCR 196
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--PNLV 231
G+ EA+ +D++ + +P ++Y ++ G+ +A + +M+ PN+V
Sbjct: 197 EGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVV 256
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
+ ++ + + G +A LF EM E KG + PD++T+N+M+ +
Sbjct: 257 IYSAIIDSLCKDGRHSDAQNLFTEMQE-----------KG-IFPDLFTYNSMIVGFCSSG 304
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLARA---DRITPP 347
RW D E + + ML + + + +I + GK E E+ E L R + IT
Sbjct: 305 RWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYS 364
Query: 348 ALIKERFC--NRLENKDY 363
++I + FC NRL+ ++
Sbjct: 365 SMI-DGFCKQNRLDAAEH 381
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/353 (16%), Positives = 146/353 (41%), Gaps = 54/353 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P + Y +I + + G D++ M + + P++V+Y+A++
Sbjct: 217 PTQITYGTIVDGMCKIGDTVSALDLLRKMEEIS--------------HIIPNVVIYSAII 262
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
++ + + A + +++++G P TY ++ + G+++ + ++ +++
Sbjct: 263 DSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKIS 322
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L+N +EGK EA ++M RGI+ + Y + C + + A
Sbjct: 323 PDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--------------------- 222
+ P ++++ LI + I + + ++M
Sbjct: 383 FYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYL 442
Query: 223 ----------------KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
C P++VTC+ ++ ++G ++A+++F+ M + ++
Sbjct: 443 VGDLNAALDLLQEMISSGLC-PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDAS 501
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
+ G V PD+ T+N ++ E ++ + E +Y+ M H G+ + + MI
Sbjct: 502 HPFNG-VEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMI 553
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 100/251 (39%), Gaps = 25/251 (9%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + L D YN +++ A +LQ++ G P T +++ + G
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNG 479
Query: 107 KYNLVYEFFRKVQKS------------YIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
K E F+ +QKS P+ Y +L++ L EGK EA E+M
Sbjct: 480 KLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH 539
Query: 155 RGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQN 214
RGIV Y + LC + +EA D + + P VV++T LI +G + +
Sbjct: 540 RGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDD 599
Query: 215 AAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV 273
+F +M + N +T ++ + + G A+ +FQEM V
Sbjct: 600 GLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSG------------V 647
Query: 274 IPDIYTFNTML 284
PD T ML
Sbjct: 648 YPDTITIRNML 658
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 107/257 (41%), Gaps = 29/257 (11%)
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P+ + + L+ + R + D +S + MER+ I + L +C CS K AL
Sbjct: 76 LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALS 135
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
KI K+ P VV++ L+ + A +F+QM + C PN+VT ++
Sbjct: 136 TFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLC 195
Query: 242 EHGLFEEAMKLFQEMAEDSNH------------------------INREYDKKGLVIPDI 277
G EA+ L M ED + R+ ++ +IP++
Sbjct: 196 REGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNV 255
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEI 333
++ ++D+ + R D + ++ M G+ + + MI+ +G+ +LL+
Sbjct: 256 VIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQE 315
Query: 334 TWEHLARADRITPPALI 350
E D +T ALI
Sbjct: 316 MLERKISPDVVTYNALI 332
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 77/166 (46%), Gaps = 9/166 (5%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDP--RLEPDIVVYNA 62
PD V ++ L G +K+ ++ M+ K L+ P +EPD+ YN
Sbjct: 463 PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKD------LDASHPFNGVEPDVQTYNI 516
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKS 121
+++ + ++ A + +++ +G P TY +++ + + + + F + KS
Sbjct: 517 LISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKS 576
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ PN + + L+N + G+ D+ + +M RRGIV +A Y L
Sbjct: 577 FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITL 622
>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
Length = 616
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/364 (21%), Positives = 154/364 (42%), Gaps = 46/364 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y SI L AG + E +++ +M PD+V +N +L
Sbjct: 237 PDVITYNSIIHALCVAGKVVEAAEILKTMSC------------------SPDLVTFNTLL 278
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + A VL+++ ++ P TY +++ + G+ + + + V++ YI
Sbjct: 279 DGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYI 338
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ +AY LV+ L + G+ +EA V++M RG +Y L C AG +A
Sbjct: 339 PDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREI 398
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
+ ++ + P + +Y ++ + G+I A + + + + + P++VT N ++
Sbjct: 399 LAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYV-PDVVTYNTLIDGLC 457
Query: 242 EHGLFEEAMKLFQEMAEDS---------------NHINREYDKKGLVI--------PDIY 278
+ EA L EMA + R D LV+ P++
Sbjct: 458 KANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVV 517
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEH 337
+ +++D R DD +V M G+ + + ++I+ S G+V E + + E
Sbjct: 518 VYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEM 577
Query: 338 LARA 341
+AR
Sbjct: 578 VARG 581
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 19/238 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN--- 109
+ PD+ ++N +++ + + A + + ++ KP TY V+ + G
Sbjct: 93 VAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKAR 152
Query: 110 -LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
L+ E RK KS P+ + Y L+N +R + EA + E M+ GI L
Sbjct: 153 ELLEEMIRKGGKSA-PDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILV 211
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP 228
+C G EEAL +D + P V++Y +I A +G + AA I M CSP
Sbjct: 212 SGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMS--CSP 269
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+LVT N ++ + + G+ A+++ +EM ++ ++PD+ T+ +++
Sbjct: 270 DLVTFNTLLDGFCKAGMLPRALEVLEEMCREN------------ILPDVITYTILVNG 315
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/361 (21%), Positives = 144/361 (39%), Gaps = 61/361 (16%)
Query: 3 SYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNA 62
S PD V Y ++ +A I+E + M++ + PD++ N
Sbjct: 165 SAPDIVTYNTLINAFYRASRIREACAFREKMKA---------------AGINPDVLTCNI 209
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK--------------- 107
+++ + E A +L +K G P TY ++ + GK
Sbjct: 210 LVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMSCSP 269
Query: 108 ----YNLVYEFFRKV--------------QKSYIPNALAYKVLVNTLWREGKTDEAVSAV 149
+N + + F K +++ +P+ + Y +LVN L R G+ A +
Sbjct: 270 DLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLL 329
Query: 150 EDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS 209
E++ R+G + Y L LC +G+ EEA + ++ + VV Y+ L+ +
Sbjct: 330 EEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRA 389
Query: 210 GNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD 268
GN+ A I +M + P L T NI++ ++ G +A+ L ++ + R Y
Sbjct: 390 GNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDL------VARGY- 442
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+PD+ T+NT++D R + + M G N ++ R G+V
Sbjct: 443 -----VPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRV 497
Query: 329 E 329
+
Sbjct: 498 D 498
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D+ YN +L+ V+ V + L G P+ T+ +++ G+ EF
Sbjct: 26 DVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFL 85
Query: 116 RKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
R + + S P+ + VL++ L+++G D+AV E+ME + Y + LC +
Sbjct: 86 RALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKS 145
Query: 175 GKCEEALMQMDKICKVANK--PLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLV 231
G E+A ++++ + K P +V+Y LI A + I+ A +MK +P+++
Sbjct: 146 GNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVL 205
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAE 290
TCNI+V + G EEA+++ M K +PD+ T+N+++ A C A
Sbjct: 206 TCNILVSGICKDGDVEEALEILDGM------------KLAGPVPDVITYNSIIHALCVAG 253
Query: 291 KRWDDLELV 299
K + E++
Sbjct: 254 KVVEAAEIL 262
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 13/181 (7%)
Query: 109 NLVYEFF--RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
+L +FF Q Y + +Y L++ L + G +D+ G + +
Sbjct: 8 DLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKI 67
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF- 225
L R C AG+ AL + + + + P V + LI GN A +F M++
Sbjct: 68 LIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSR 127
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
P +VT N ++ + G E+A +L +EM K G PDI T+NT+++
Sbjct: 128 VKPEIVTYNTVISGLCKSGNLEKARELLEEMIR----------KGGKSAPDIVTYNTLIN 177
Query: 286 A 286
A
Sbjct: 178 A 178
>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
Length = 436
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 145/340 (42%), Gaps = 35/340 (10%)
Query: 1 MSSY--PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIV 58
M+ Y PD + Y I L + I + ++ M + ++PD
Sbjct: 106 MARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRG---------------IKPDAF 150
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
+YN VL+ + ++ E A + +++ +Q P+ TY ++ + + YE F+++
Sbjct: 151 IYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEM 210
Query: 119 Q-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
K Y+P ++Y L++ ++ A + M R V + Y L L +GK
Sbjct: 211 AGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKV 270
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIM 236
+ A +D + K P V +Y+ LI + A + QM +P +VT NI+
Sbjct: 271 QAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNIL 330
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ + E+A KLF+ MA+ H P + T+NT+L A K+ D
Sbjct: 331 LNSLCRADKLEDAFKLFRGMAQRRCH------------PTVVTYNTLLRALCHHKQLDGA 378
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLE 332
+Y M+ G +A + + +RAGKV EL+E
Sbjct: 379 HRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELME 418
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/361 (19%), Positives = 143/361 (39%), Gaps = 63/361 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P + ++A +AG ++++ +V M +G Y ++
Sbjct: 8 PGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASG---------------YGILI 52
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + ++ A+ +L ++ + K A Y ++ + + E K+ + P
Sbjct: 53 SCLCKVGNFDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPP 112
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+AL Y +V L + + D+A++ VE+M RGI A +Y + LC K EEA +
Sbjct: 113 DALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLF 172
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM---------------------- 222
+K+ K P VV+Y LI + I+ A +F +M
Sbjct: 173 EKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKK 232
Query: 223 --------------KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD 268
++ C PN+VT ++ + G + A ++ M
Sbjct: 233 KDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMV----------- 281
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
KKG V P++ T++ ++D +R D+ + ++M+ G+ + ++ RA K+
Sbjct: 282 KKG-VTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKL 340
Query: 329 E 329
E
Sbjct: 341 E 341
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 86/198 (43%), Gaps = 16/198 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L ++G ++ +V+D M K G + P++ Y+ ++
Sbjct: 252 PNVVTYTTLIDGLSKSGKVQAAAEVLDGM-------VKKG--------VTPNVATYSCLI 296
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + ++ + A +L+Q+ QG P+ TY +++ + K ++ FR + Q+
Sbjct: 297 DGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCH 356
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y L+ L + D A +M +G A Y LA L AGK EA
Sbjct: 357 PTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQEL 416
Query: 184 MDKICKVANKPLVVSYTG 201
M+K+ P S G
Sbjct: 417 MEKMKLTKRNPFGRSSQG 434
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/210 (18%), Positives = 89/210 (42%), Gaps = 12/210 (5%)
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ IP A + + + + G+ ++ + M G A+ Y L CLC G +E
Sbjct: 4 RRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDE 63
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKA 239
A + + K ++Y+ +I ++ A + +M + P+ +T +V+
Sbjct: 64 AYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPIVER 123
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ ++A+ +EMA + PD + +N +L E++ ++ L+
Sbjct: 124 LCKTKRIDDALATVEEMATRG------------IKPDAFIYNFVLSGLCQEEKVEEARLL 171
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+++M+ ++ N + +I +A ++E
Sbjct: 172 FEKMVKQRINPNVVTYNTLINGLCKAWRIE 201
>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 146/328 (44%), Gaps = 18/328 (5%)
Query: 6 DTVAYRSIAVT-LGQAGHIKELFDVIDSMRSLPKKKFKTGTLER-WDPRLEPDIVVYNAV 63
+TV Y S + LG I L +I+ L + F L + LEP IV + +
Sbjct: 79 ETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTL 138
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SY 122
LN + + + + +G +P+ TY +++ + GK N F ++++K
Sbjct: 139 LNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGC 198
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+PN + Y L++ G+ DEA S + M +G + Y L C + EEA+
Sbjct: 199 VPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQ 258
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+D+ + P +V++T +I +G A +F + + +PN++T +++
Sbjct: 259 LLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLC 318
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVY 300
+HG EEA LFQEM ++ V P++ + ++D+ C K D EL +
Sbjct: 319 KHGNLEEAFALFQEM------------QRSTVKPNLVIYTILIDSLCKCGKIKDGKEL-F 365
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKV 328
R++ GL N + ++ + G +
Sbjct: 366 SRLIDEGLKPNVYTYTALVGALCKEGLI 393
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 118/257 (45%), Gaps = 14/257 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+P++ YN ++N+ + + A L+Q+++ G P+ Y +++ G+ +
Sbjct: 163 LQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEAR 222
Query: 113 EFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F V K PN Y L+N + + +EAV +++ R+G+V + + L
Sbjct: 223 SVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGL 282
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C AG+ A IC + P +++Y L+ GN++ A +F +M ++ PNL
Sbjct: 283 CRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNL 342
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
V I++ + + G ++ +LF + ++ + P++YT+ ++ A E
Sbjct: 343 VIYTILIDSLCKCGKIKDGKELFSRLIDEG------------LKPNVYTYTALVGALCKE 390
Query: 291 KRWDDLELVYKRMLHHG 307
+ ++++M G
Sbjct: 391 GLIIEAHKLFRKMEEDG 407
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 102/205 (49%), Gaps = 2/205 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++ Y +++N + ++ E A +L + ++G P T+ ++ + G+ +
Sbjct: 235 PNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQL 294
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
FR + + PN + Y VL++ L + G +EA + ++M+R + + +Y L LC
Sbjct: 295 FRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCK 354
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
GK ++ ++ KP V +YT L+ A G I A +F +M ++ C+P+
Sbjct: 355 CGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCA 414
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMA 257
N++++ +L+H A +L +EM
Sbjct: 415 YNVIIQGFLQHKDPSMARQLVEEMV 439
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 118/255 (46%), Gaps = 14/255 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P IV ++ + ++ VR +E ++ ++++ G + + +++ + +
Sbjct: 60 PCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSV 119
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K + P+ + + L+N L EGK D+ + +DM RG+ + Y + L
Sbjct: 120 LSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSK 179
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+GK EAL + ++ KV P VV+Y+ LI G + A +F+ M C+PN+ T
Sbjct: 180 SGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYT 239
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
++ Y + EEA++L E +KGLV PDI TF T++ R
Sbjct: 240 YTSLMNGYCKIERIEEAVQLLDETL-----------RKGLV-PDIVTFTTIISGLCRAGR 287
Query: 293 WDDLELVYKRMLHHG 307
+ +++ + HG
Sbjct: 288 PLAAQQLFRYICAHG 302
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 98/240 (40%), Gaps = 14/240 (5%)
Query: 90 PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNAL-AYKVLVNTLWREGKTDEAVSA 148
P + + ++ G Y V ++++ I + + +L+N + D +S
Sbjct: 60 PCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSV 119
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+ + + G+ S + L LC GK ++ +M D + +P V +Y +I +
Sbjct: 120 LSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSK 179
Query: 209 SGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
SG A QM+ C PN+V + ++ Y G +EA +F M
Sbjct: 180 SGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVS--------- 230
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
KG P++YT+ ++++ +R ++ + L GL + +I RAG+
Sbjct: 231 --KGCT-PNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGR 287
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 70/159 (44%), Gaps = 16/159 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y + L + G+++E F + M+ ++P++V+Y ++
Sbjct: 305 PNIMTYGVLLDGLCKHGNLEEAFALFQEMQR---------------STVKPNLVIYTILI 349
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
++ + + + + +L +G KP+ TY ++ + G ++ FRK+++
Sbjct: 350 DSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCT 409
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
P+ AY V++ + A VE+M RG AA
Sbjct: 410 PDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSADAA 448
>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 526
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 141/331 (42%), Gaps = 26/331 (7%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M PD V Y +I +L + GH+ + + M E + R PD+V+Y
Sbjct: 170 MGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQM-------------ENYGIR--PDVVMY 214
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQ 119
+++N +W A +L+ + ++ KP T+ +++ + GK E + + +Q
Sbjct: 215 TSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQ 274
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
S PN Y L+N L EG+ DEA ME +G Y L C K E+
Sbjct: 275 MSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVED 334
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A+ ++ + ++YT LIQ G A +F M PN+ T N+++
Sbjct: 335 AMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLH 394
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+G +A+ +F++M + RE D V P+I T+N +L + + +
Sbjct: 395 CLCYNGKVNKALMIFEDMQK------REIDG---VPPNIRTYNVLLHGLCYNGKLEKALM 445
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
V+ M + + +I +AGKV+
Sbjct: 446 VFGDMQKRDMDIGIITYTIIIQGMCKAGKVK 476
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 105/211 (49%), Gaps = 5/211 (2%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V Y +++N + K+ E A + ++ Q+G + TY +++ GK N+ E
Sbjct: 314 PDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEV 373
Query: 115 F-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG---SAALYYDLARC 170
F V + PN Y VL++ L GK ++A+ EDM++R I G + Y L
Sbjct: 374 FGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHG 433
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
LC GK E+ALM + K +++YT +IQ +G +++A +F + PN
Sbjct: 434 LCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPN 493
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
+VT M+ GL EA LF++M ED
Sbjct: 494 VVTYTTMISGLFREGLMLEAHVLFRKMKEDG 524
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 124/282 (43%), Gaps = 14/282 (4%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ R P I+ + +LN + K+++ + + L+ G T L+M +
Sbjct: 64 ESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMNCFCQSSQPC 123
Query: 110 LVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
L F K+ K + P+ + L+N + +EA+S V M GI +Y +
Sbjct: 124 LASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTII 183
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQMKNFCS 227
LC G + AL +++ +P VV YT L+ +SG ++A + MK
Sbjct: 184 DSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIK 243
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P+++T N ++ A+++ G +A +L+ EM + S + P+I+T+ ++++
Sbjct: 244 PDVITFNALIDAFVKEGKLLDAKELYNEMIQMS------------IAPNIFTYTSLINGL 291
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
E R D+ ++ M G + + +I + KVE
Sbjct: 292 CMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVE 333
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 122/298 (40%), Gaps = 49/298 (16%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
EPDI + +++N + E A ++ Q+ + G KP
Sbjct: 137 FEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKP---------------------- 174
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ + Y ++++L + G D A+S ME GI +Y L LC
Sbjct: 175 ------------DVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLC 222
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLV 231
++G+ +A + + + K KP V+++ LI A + G + +A ++N+M +PN+
Sbjct: 223 NSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIF 282
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T ++ G +EA ++F M + KG PD+ + ++++ K
Sbjct: 283 TYTSLINGLCMEGRLDEARQMFYLM-----------ETKG-CFPDVVAYTSLINGFCKCK 330
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPAL 349
+ +D ++ M GL N + +I GK + + + H+ R PP +
Sbjct: 331 KVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHM--VSRGVPPNI 386
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 119/272 (43%), Gaps = 14/272 (5%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
Y +L + Q+ A + + + PS + ++ V+ K+++V + +Q
Sbjct: 39 YREILRNGLHSLQFNEALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQ 98
Query: 120 KSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ N L +L+N + + A S + + + G + L C + E
Sbjct: 99 IMGVSNDLYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIE 158
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
EA+ ++++ ++ KP VV YT +I + +G++ NA +FNQM+N+ P++V +V
Sbjct: 159 EAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLV 218
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
G + +A L + M + + PD+ TFN ++DA E + D +
Sbjct: 219 NGLCNSGRWRDADLLLRGMMKRK------------IKPDVITFNALIDAFVKEGKLLDAK 266
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+Y M+ + N + +I G+++
Sbjct: 267 ELYNEMIQMSIAPNIFTYTSLINGLCMEGRLD 298
>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
Length = 592
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 120/265 (45%), Gaps = 14/265 (5%)
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+E + EPD+ YNAV++ + Q E A VL ++K +G P TY +++ +
Sbjct: 135 VMEILESHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCN 194
Query: 105 CGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
K L ++ + +P + Y +L+ EG +EA+ +E+M RG++
Sbjct: 195 RRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYT 254
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y + R +C G E A + + +P V+SY L++A L+ G + +M
Sbjct: 255 YNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMF 314
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
C PN VT +I++ + G +EA+ + + M E + PD Y+++
Sbjct: 315 SRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKE------------LTPDTYSYDP 362
Query: 283 MLDACAAEKRWDDLELVYKRMLHHG 307
++ A E R D + M+ +G
Sbjct: 363 LISALCKEGRLDLAIGIMDYMISNG 387
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 138/317 (43%), Gaps = 32/317 (10%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN--- 109
L PD+ YNA++ + E A ++ L +G +P +Y +++ L GK++
Sbjct: 248 LLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGE 307
Query: 110 -LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
LV E F + + PN + Y +L+++L R G+ DEA+S ++ M + + Y L
Sbjct: 308 KLVAEMFSRGCE---PNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLI 364
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CS 227
LC G+ + A+ MD + P +V+Y ++ A +GN A IFN+++ C
Sbjct: 365 SALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCP 424
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKGLV------ 273
PN+ + N M+ A G A+ + M N + + GLV
Sbjct: 425 PNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGL 484
Query: 274 ---------IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASR 324
P + ++N +L +R DD ++ M+ G N ++ +I
Sbjct: 485 LDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGF 544
Query: 325 AG-KVELLEITWEHLAR 340
AG + E +E+ +R
Sbjct: 545 AGWRTEAMELANSLFSR 561
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 105/250 (42%), Gaps = 17/250 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y + +L + G I E V+ M + L PD Y+ ++
Sbjct: 320 PNKVTYSILISSLCRFGRIDEAISVLKVM---------------IEKELTPDTYSYDPLI 364
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+A + + + A ++ + G P Y ++ + G N E F K++
Sbjct: 365 SALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCP 424
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN +Y +++ LW G A+ V M +GI Y L CLC G EEA+
Sbjct: 425 PNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGL 484
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+D + + +P V+SY ++ I +A +F +M + C PN T ++++
Sbjct: 485 LDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGF 544
Query: 243 HGLFEEAMKL 252
G EAM+L
Sbjct: 545 AGWRTEAMEL 554
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 116/278 (41%), Gaps = 33/278 (11%)
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS- 121
+LN + ++ + + L+ L +G P +++ L G +N F+ ++K+
Sbjct: 84 LLNRSCKAGKFNESLYFLECLVNKGYTPD-----VILCTKLIKGFFN-----FKNIEKAS 133
Query: 122 ---------YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
P+ AY +++ + + + A + M+ RG + Y + LC
Sbjct: 134 RVMEILESHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLC 193
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
+ K AL +D++ P V++YT LI+A + G I A + +M P++
Sbjct: 194 NRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMY 253
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N +++ + G+ E A +L + PD+ ++N +L A +
Sbjct: 254 TYNAIIRGMCKEGMVERAAELITSLTSKGCE------------PDVISYNILLRAFLNQG 301
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+WD+ E + M G N + +I R G+++
Sbjct: 302 KWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRID 339
>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 915
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 90/420 (21%), Positives = 176/420 (41%), Gaps = 86/420 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFK------TGTL 46
P+ + Y ++ + G I++ DV++ M S L K K G L
Sbjct: 391 PNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRNVHKAMGVL 450
Query: 47 ERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
+ + ++ PD+V YN++++ R ++ A+ +L + +G P TY +++ +
Sbjct: 451 NKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKS 510
Query: 106 GKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
+ + F + QK IPN + Y L++ + GK +EA +E M + + ++ +
Sbjct: 511 KRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTF 570
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-K 223
L LC+ GK +EA + +K+ K+ +P V + T LI L G+ +A F QM
Sbjct: 571 NALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLS 630
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
+ P+ T ++ Y G ++A + +M E+ V PD++T++++
Sbjct: 631 SGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENG------------VSPDLFTYSSL 678
Query: 284 L----------DACAAEKRWDD-----------------LELVY---------------- 300
+ A KR D LE+ Y
Sbjct: 679 IKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNM 738
Query: 301 ----------KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
++M+ HG+ NAK + +++L G + + E ++H+ + + I+P L+
Sbjct: 739 MEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELV 798
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 132/294 (44%), Gaps = 15/294 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD Y +++ +RK + AF V +++ +G + + Y ++ + + +
Sbjct: 249 LDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAM 308
Query: 113 EFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F K++ P Y VL+ L + EA++ V++ME +GI + Y L L
Sbjct: 309 DLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSL 368
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
CS K E+A + ++ + P V++Y LI G I++A + M++ PN
Sbjct: 369 CSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNT 428
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T N ++K Y + + +AM + +M E V+PD+ T+N+++D
Sbjct: 429 RTYNELIKGYCKRNV-HKAMGVLNKMLERK------------VLPDVVTYNSLIDGQCRS 475
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI 344
+D + M GL + + MI ++ +VE ++ L + D I
Sbjct: 476 GNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVI 529
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 107/266 (40%), Gaps = 31/266 (11%)
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
Y L+N+L R G DE +M + + Y + C G EEA + I
Sbjct: 185 CYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMI 244
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLF 246
+ P +YT LI ++ +A +F +M C N V ++
Sbjct: 245 VEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRI 304
Query: 247 EEAMKLFQEMAED----------------------SNHIN--REYDKKGLVIPDIYTFNT 282
+EAM LF +M +D S +N +E ++KG + P+I+T+
Sbjct: 305 DEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKG-IKPNIHTYTV 363
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLEITWEHL 338
++D+ ++ + + + +ML GL N + +I + G +E ++E+
Sbjct: 364 LIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRN 423
Query: 339 ARADRITPPALIKERFCNRLENKDYG 364
R + T LIK +C R +K G
Sbjct: 424 LRPNTRTYNELIK-GYCKRNVHKAMG 448
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 99/258 (38%), Gaps = 37/258 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + T + G +++ D++ M+ + + PD+ Y++++
Sbjct: 635 PDAHTYTTFIQTYCREGRLQDAEDMVAKMK---------------ENGVSPDLFTYSSLI 679
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ AF VL+++ G +PS T+ +++ +L KY V K P
Sbjct: 680 KGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEM-KYGKV--------KGGEP 730
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
V+ N + + D V +E M G+ +A Y L +C G A
Sbjct: 731 GVC---VMSNMM----EFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVF 783
Query: 185 DKIC-KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS---PNLVTCNIMVKAY 240
D + K P + + L+ C AA + + M C P L +C I++
Sbjct: 784 DHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDM--ICVGHLPQLESCKILICRL 841
Query: 241 LEHGLFEEAMKLFQEMAE 258
+ G E +FQ + +
Sbjct: 842 YKKGEKERGTSVFQNLLQ 859
Score = 38.1 bits (87), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/161 (19%), Positives = 71/161 (44%), Gaps = 15/161 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ +Y + + + + G+++ V D M+ K G + P +V+NA+L
Sbjct: 758 PNAKSYEKLMLGICEIGNLRVAEKVFDHMQQ------KEG--------ISPSELVFNALL 803
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ C + ++ A V+ + G P + +++ + G+ F+ + Q Y
Sbjct: 804 SCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQCGYY 863
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
+ LA+K++++ + ++G + ME+ G S+ Y
Sbjct: 864 DDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSSQTY 904
>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 577
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 128/278 (46%), Gaps = 14/278 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD+VVY +++++ + +Q AF + ++ QG PS TY ++ + ++ V
Sbjct: 196 QPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTA 255
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++ S I PN + + +V+ L +EGK EA V+ M +RG+ + Y L C
Sbjct: 256 LLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHC 315
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
+ +EA+ D + P VVSY+ LI I+ A Y+F +M + PN V
Sbjct: 316 LRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTV 375
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T + ++ G ++A+ LF EM IPD ++ +LD +
Sbjct: 376 TYSTLMHGLCHVGRLQDAIALFHEMVTRGQ------------IPDFVSYCILLDYLCKNR 423
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
R D+ + K + + + + + +I RAG++E
Sbjct: 424 RLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELE 461
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 125/294 (42%), Gaps = 14/294 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P+I N ++N+ ++ AF VL ++ + G +P+ T+ ++ + GK V
Sbjct: 90 IPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVL 149
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F K + + + PN + Y L+N L + G T A+ + ME+ +Y + L
Sbjct: 150 HLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSL 209
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C + +A ++ P + +Y LI A + ++ + N+M N PN+
Sbjct: 210 CKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNV 269
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
V + +V A + G EA + M K+G V P++ T+N ++D
Sbjct: 270 VIFSTVVDALCKEGKVMEAHDVVDMMI-----------KRG-VEPNVVTYNALMDGHCLR 317
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI 344
D+ V+ M+ G + + +I + ++E +E + R + I
Sbjct: 318 SEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELI 371
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 125/274 (45%), Gaps = 22/274 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL--------------ER 48
P+ V + ++ L + G + E DV+D M R + L +
Sbjct: 267 PNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKV 326
Query: 49 WDPRL----EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+D + PD+V Y+ ++N + ++ E A ++ +++ ++ P+ TY +M +
Sbjct: 327 FDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCH 386
Query: 105 CGKY-NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ + + F V + IP+ ++Y +L++ L + + DEA++ ++ +E + +
Sbjct: 387 VGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQI 446
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + +C AG+ E A + P V +YT +I G + A+ +F +MK
Sbjct: 447 YTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMK 506
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
SPN T N++ + +L + ++L QEM
Sbjct: 507 RKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEM 540
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 127/309 (41%), Gaps = 57/309 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL---------------- 46
PD V Y SI +L + + + F++ M + + F +L
Sbjct: 197 PDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTAL 256
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM----- 99
E + ++ P++V+++ V++A + + A V+ + ++G +P+ TY +M
Sbjct: 257 LNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCL 316
Query: 100 -----------EVMLACG------KYNLVYEFFRKVQ--------------KSYIPNALA 128
+ M+ G Y+ + + K+Q K IPN +
Sbjct: 317 RSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVT 376
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
Y L++ L G+ +A++ +M RG + Y L LC + +EA+ + I
Sbjct: 377 YSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIE 436
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFE 247
P + YT +I +G ++ A +F+ + + PN+ T IM+ + GL
Sbjct: 437 GSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLA 496
Query: 248 EAMKLFQEM 256
EA KLF EM
Sbjct: 497 EASKLFGEM 505
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 1/124 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PDI +Y V++ R + E A + L +G P+ TY +++ + G
Sbjct: 440 MDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEAS 499
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F +++ K Y PN Y ++ R +T + +++M RG + L L
Sbjct: 500 KLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEML 559
Query: 172 CSAG 175
G
Sbjct: 560 SDDG 563
>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
Length = 684
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 134/299 (44%), Gaps = 30/299 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y + + ++ + +V+D MR+ K T P+IV YN ++
Sbjct: 178 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRA------KGCT---------PNIVTYNVII 222
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N R + + A L +L G +P +Y V++ + A ++ V E F ++ +K+ +
Sbjct: 223 NGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCM 282
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + +LV R G + A+ +E M G + L + +C G+ ++A
Sbjct: 283 PNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQF 342
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + P +SYT +++ + ++A + +M + C PN VT N + +
Sbjct: 343 LNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQ 402
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD-LELVY 300
GL E+A L ++M+E +N I T+N +++ + R D LEL Y
Sbjct: 403 KGLIEQATMLIEQMSEHGCEVN------------IVTYNALVNGFCVQGRVDSALELFY 449
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 89/376 (23%), Positives = 173/376 (46%), Gaps = 43/376 (11%)
Query: 1 MSSY---PDTVAYRSIAVTLGQAGH---IKELFDVIDSMRSLPKK-------KF--KTGT 45
+SSY PDTV+Y ++ L A ++ELF + +P + +F + G
Sbjct: 241 LSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGM 300
Query: 46 LERWDPRLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGL 97
+ER LE + + N V+N ++ + + AF L + G P +Y
Sbjct: 301 VERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTT 360
Query: 98 VMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
V++ + ++ E ++ V+K+ PN + + + L ++G ++A +E M G
Sbjct: 361 VLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG 420
Query: 157 IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
+ Y L C G+ + AL + + KP ++YT L+ ++ + AA
Sbjct: 421 CEVNIVTYNALVNGFCVQGRVDSAL---ELFYSMPCKPNTITYTTLLTGLCNAERLDAAA 477
Query: 217 YIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
+ +M + C+PN+VT N++V + + GL +EA++L ++M E P
Sbjct: 478 ELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG------------CTP 525
Query: 276 DIYTFNTMLDACAAEKRWDD-LELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEIT 334
++ T+NT+LD + ++ LEL++ ++ +G+ + + +I SR +VE I
Sbjct: 526 NLITYNTLLDGITKDCNSEEALELLHG-LVSNGVSPDIVTYSSIIGVLSREDRVE-EAIK 583
Query: 335 WEHLARADRITPPALI 350
H+ + + P A+I
Sbjct: 584 MFHIVQDLGMRPKAVI 599
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/286 (20%), Positives = 110/286 (38%), Gaps = 51/286 (17%)
Query: 46 LERWDPRLE-PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
++R R E PD+ + ++ RR + A VL+ ++ G Y ++
Sbjct: 66 VDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCR 125
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G+ + + + P+A Y ++ L G+ EA+S ++DM RG
Sbjct: 126 YGQLDAARRLIASMPVA--PDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGC------- 176
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK- 223
+P VV+YT L++A S A + ++M+
Sbjct: 177 ----------------------------QPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRA 208
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
C+PN+VT N+++ G ++A + ++ PD ++ T+
Sbjct: 209 KGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQ------------PDTVSYTTV 256
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
L A KRW+D+E ++ M+ N ++ R G VE
Sbjct: 257 LKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVE 302
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 123/306 (40%), Gaps = 32/306 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V + + L Q G I++ +I+ M + E +IV YNA++
Sbjct: 388 PNEVTFNTFICILCQKGLIEQATMLIEQMS---------------EHGCEVNIVTYNALV 432
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + + + A + + KP+ TY ++ + + + E + +QK
Sbjct: 433 NGFCVQGRVDSALELFYSMPC---KPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCA 489
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + VLV+ ++G DEA+ VE M G + Y L + EEAL
Sbjct: 490 PNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALEL 549
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ + P +V+Y+ +I ++ A +F+ +++ P V N ++ A +
Sbjct: 550 LHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCK 609
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ A+ F M + +P+ T+ T+++ A E + + +
Sbjct: 610 RCNTDGAIDFFAYMVSNG------------CMPNELTYITLIEGLANEDFLKETRDLLRE 657
Query: 303 MLHHGL 308
+ G+
Sbjct: 658 LCSRGV 663
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA-CGKYNLV 111
+ PDIV Y++++ R + E A + ++ G +P A Y ++ + C +
Sbjct: 558 VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 617
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
F V +PN L Y L+ L E E + ++ RG++
Sbjct: 618 DFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGVL 664
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 72/196 (36%), Gaps = 32/196 (16%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V + + Q G + E ++++ M + P+++ YN +L
Sbjct: 490 PNVVTFNVLVSFFCQKGLMDEAIELVEQM---------------MEHGCTPNLITYNTLL 534
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + E A +L L G P TY ++ V+ + + F VQ +
Sbjct: 535 DGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMR 594
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY----------------DL 167
P A+ Y ++ L + TD A+ M G + + Y DL
Sbjct: 595 PKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDL 654
Query: 168 ARCLCSAGKCEEALMQ 183
R LCS G + L++
Sbjct: 655 LRELCSRGVLNKNLLE 670
>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
Length = 684
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 134/299 (44%), Gaps = 30/299 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y + + ++ + +V+D MR+ K T P+IV YN ++
Sbjct: 178 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRA------KGCT---------PNIVTYNVII 222
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N R + + A L +L G +P +Y V++ + A ++ V E F ++ +K+ +
Sbjct: 223 NGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCM 282
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + +LV R G + A+ +E M G + L + +C G+ ++A
Sbjct: 283 PNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQF 342
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + P +SYT +++ + ++A + +M + C PN VT N + +
Sbjct: 343 LNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQ 402
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD-LELVY 300
GL E+A L ++M+E +N I T+N +++ + R D LEL Y
Sbjct: 403 KGLIEQATMLIEQMSEHGCEVN------------IVTYNALVNGFCVQGRVDSALELFY 449
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/376 (23%), Positives = 173/376 (46%), Gaps = 43/376 (11%)
Query: 1 MSSY---PDTVAYRSIAVTLGQAGH---IKELFDVIDSMRSLPKK-------KF--KTGT 45
+SSY PDTV+Y ++ L A ++ELF + +P + +F + G
Sbjct: 241 LSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGM 300
Query: 46 LERWDPRLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGL 97
+ER LE + + N V+N ++ + + AF L + G P +Y
Sbjct: 301 VERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTT 360
Query: 98 VMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
V++ + ++ E ++ V+K+ PN + + + L ++G ++A +E M G
Sbjct: 361 VLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG 420
Query: 157 IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
+ Y L C G+ + AL + + KP ++YT L+ ++ + AA
Sbjct: 421 CEVNIVTYNALVNGFCVQGRVDSAL---ELFYSMPCKPNTITYTTLLTGLCNAERLDAAA 477
Query: 217 YIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
+ +M + C+PN+VT N++V + + GL +EA++L ++M E P
Sbjct: 478 ELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG------------CTP 525
Query: 276 DIYTFNTMLDACAAEKRWDD-LELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEIT 334
++ T+NT+LD + ++ LEL++ ++ +G+ + + +I SR +VE I
Sbjct: 526 NLITYNTLLDGITNDCNSEEALELLHG-LVSNGVSPDIVTYSSIIGVLSREDRVE-EAIK 583
Query: 335 WEHLARADRITPPALI 350
H+ + + P A+I
Sbjct: 584 MFHIVQDLGMRPKAVI 599
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/286 (20%), Positives = 110/286 (38%), Gaps = 51/286 (17%)
Query: 46 LERWDPRLE-PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
++R R E PD+ + ++ RR + A VL+ ++ G Y ++
Sbjct: 66 VDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCR 125
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G+ + + + P+A Y ++ L G+ EA+S ++DM RG
Sbjct: 126 YGQLDAARRLIASMPVA--PDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGC------- 176
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK- 223
+P VV+YT L++A S A + ++M+
Sbjct: 177 ----------------------------QPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRA 208
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
C+PN+VT N+++ G ++A + ++ PD ++ T+
Sbjct: 209 KGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQ------------PDTVSYTTV 256
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
L A KRW+D+E ++ M+ N ++ R G VE
Sbjct: 257 LKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVE 302
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 124/306 (40%), Gaps = 32/306 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V + + L Q G I++ +I+ M + E +IV YNA++
Sbjct: 388 PNEVTFNTFICILCQKGLIEQATMLIEQMS---------------EHGCEVNIVTYNALV 432
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + + + A + + KP+ TY ++ + + + E + +QK
Sbjct: 433 NGFCVQGRVDSALELFYSMPC---KPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCA 489
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + VLV+ ++G DEA+ VE M G + Y L + + EEAL
Sbjct: 490 PNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALEL 549
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ + P +V+Y+ +I ++ A +F+ +++ P V N ++ A +
Sbjct: 550 LHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCK 609
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ A+ F M + +P+ T+ T+++ A E + + +
Sbjct: 610 RCNTDGAIDFFAYMVSNG------------CMPNELTYITLIEGLANEDFLKETRDLLRE 657
Query: 303 MLHHGL 308
+ G+
Sbjct: 658 LCSRGV 663
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG-LVMEVMLACGKYNLV 111
+ PDIV Y++++ R + E A + ++ G +P A Y +++ + C +
Sbjct: 558 VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 617
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
F V +PN L Y L+ L E E + ++ RG++
Sbjct: 618 DFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGVL 664
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 71/196 (36%), Gaps = 32/196 (16%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V + + Q G + E ++++ M + P+++ YN +L
Sbjct: 490 PNVVTFNVLVSFFCQKGLMDEAIELVEQM---------------MEHGCTPNLITYNTLL 534
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ E A +L L G P TY ++ V+ + + F VQ +
Sbjct: 535 DGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMR 594
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY----------------DL 167
P A+ Y ++ L + TD A+ M G + + Y DL
Sbjct: 595 PKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDL 654
Query: 168 ARCLCSAGKCEEALMQ 183
R LCS G + L++
Sbjct: 655 LRELCSRGVLNKNLLE 670
>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 913
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 118/254 (46%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P A+R I AG +K D++D MR ++G P ++ YNA++
Sbjct: 555 PSNRAFRPIIEGFAVAGDMKRALDILDLMR-------RSGC--------APTVMTYNALI 599
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ +R+ Q E A VL ++ G P+ TY ++M A G +E+F K+++ +
Sbjct: 600 HGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAATGDIAKAFEYFTKIKEGGLK 659
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ Y+ L+ + G+ A++ +M + I + +Y L G EA
Sbjct: 660 LDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNILIDGWARRGDVWEAADL 719
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
M ++ + P + +YT I AC +G++Q A + ++M + PNL T ++K +
Sbjct: 720 MKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSDVGLKPNLKTYTTLIKGWAR 779
Query: 243 HGLFEEAMKLFQEM 256
L + A+K F+EM
Sbjct: 780 ASLPDRALKCFEEM 793
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 122/275 (44%), Gaps = 14/275 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD +YN ++ A + + A +L++++++ +PS + ++E G
Sbjct: 518 LQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRAL 577
Query: 113 EFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +++S P + Y L++ L R+ + + AVS + M GI + Y + R
Sbjct: 578 DILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGY 637
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
+ G +A KI + K V Y L++AC SG +Q+A + +M + + N
Sbjct: 638 AATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNT 697
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
NI++ + G EA L ++M ED V P+I+T+ + ++AC
Sbjct: 698 FVYNILIDGWARRGDVWEAADLMKQMKEDG------------VPPNIHTYTSYINACCKA 745
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRA 325
+ V M GL N K + +I +RA
Sbjct: 746 GDMQRAQTVIDEMSDVGLKPNLKTYTTLIKGWARA 780
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 110/251 (43%), Gaps = 14/251 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P I+ Y ++N V+ + A + ++++ G K + TY +++ + + +
Sbjct: 450 PSIISYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRI 509
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F ++ KS + P+ Y +L+ + G D A+ +E M++ + S + +
Sbjct: 510 FEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAV 569
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVT 232
AG + AL +D + + P V++Y LI + ++ A + N+M +PN T
Sbjct: 570 AGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHT 629
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
I+++ Y G +A + F ++ K+G + D+Y + T+L AC R
Sbjct: 630 YTIIMRGYAATGDIAKAFEYFTKI------------KEGGLKLDVYIYETLLRACCKSGR 677
Query: 293 WDDLELVYKRM 303
V + M
Sbjct: 678 MQSALAVTREM 688
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 4/154 (2%)
Query: 108 YNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ V F ++ K P+ + +++ + G A + E+M RGI +A ++ L
Sbjct: 262 WQAVVSAFERIPK---PSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSL 318
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFC 226
A AL +++ + +V+Y+ LI + Q+A +F + K N
Sbjct: 319 VHAYAVARDMRGALSCTEEMKAEGIELTIVTYSILISGFGKINDTQSADNLFKEAKTNLG 378
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
N + + ++ A+ + G + A +L EM ED
Sbjct: 379 DLNGIIYSNIIHAHCQSGNMDRAEELVHEMEEDG 412
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 19/164 (11%)
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQ-WEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
T E ++ + VYN +++ RR WE A +++Q+K+ G P+ TY +
Sbjct: 685 TREMSSQKIARNTFVYNILIDGWARRGDVWEAAD-LMKQMKEDGVPPNIHTYTSYINACC 743
Query: 104 ACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G ++ + PN Y L+ R D A+ E+M+ G+ A
Sbjct: 744 KAGDMQRAQTVIDEMSDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEMKLAGLKPDEA 803
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
Y+ L L S E +YTG++ C
Sbjct: 804 AYHCLVTSLLSRATVMEG----------------STYTGILSVC 831
>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
Length = 586
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 128/278 (46%), Gaps = 14/278 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD+VVY +++++ + +Q AF + ++ QG PS TY ++ + ++ V
Sbjct: 205 QPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTA 264
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++ S I PN + + +V+ L +EGK EA V+ M +RG+ + Y L C
Sbjct: 265 LLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHC 324
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
+ +EA+ D + P VVSY+ LI I+ A Y+F +M + PN V
Sbjct: 325 LRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTV 384
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T + ++ G ++A+ LF EM IPD ++ +LD +
Sbjct: 385 TYSTLMHGLCHVGRLQDAIALFHEMVTRGQ------------IPDFVSYCILLDYLCKNR 432
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
R D+ + K + + + + + +I RAG++E
Sbjct: 433 RLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELE 470
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 125/294 (42%), Gaps = 14/294 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P+I N ++N+ ++ AF VL ++ + G +P+ T+ ++ + GK V
Sbjct: 99 IPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVL 158
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F K + + + PN + Y L+N L + G T A+ + ME+ +Y + L
Sbjct: 159 HLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSL 218
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C + +A ++ P + +Y LI A + ++ + N+M N PN+
Sbjct: 219 CKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNV 278
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
V + +V A + G EA + M K+G V P++ T+N ++D
Sbjct: 279 VIFSTVVDALCKEGKVMEAHDVVDMMI-----------KRG-VEPNVVTYNALMDGHCLR 326
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI 344
D+ V+ M+ G + + +I + ++E +E + R + I
Sbjct: 327 SEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELI 380
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 125/274 (45%), Gaps = 22/274 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL--------------ER 48
P+ V + ++ L + G + E DV+D M R + L +
Sbjct: 276 PNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKV 335
Query: 49 WDPRL----EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+D + PD+V Y+ ++N + ++ E A ++ +++ ++ P+ TY +M +
Sbjct: 336 FDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCH 395
Query: 105 CGKY-NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ + + F V + IP+ ++Y +L++ L + + DEA++ ++ +E + +
Sbjct: 396 VGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQI 455
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + +C AG+ E A + P V +YT +I G + A+ +F +MK
Sbjct: 456 YTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMK 515
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
SPN T N++ + +L + ++L QEM
Sbjct: 516 RKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEM 549
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 127/309 (41%), Gaps = 57/309 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL---------------- 46
PD V Y SI +L + + + F++ M + + F +L
Sbjct: 206 PDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTAL 265
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM----- 99
E + ++ P++V+++ V++A + + A V+ + ++G +P+ TY +M
Sbjct: 266 LNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCL 325
Query: 100 -----------EVMLACG------KYNLVYEFFRKVQ--------------KSYIPNALA 128
+ M+ G Y+ + + K+Q K IPN +
Sbjct: 326 RSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVT 385
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
Y L++ L G+ +A++ +M RG + Y L LC + +EA+ + I
Sbjct: 386 YSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIE 445
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFE 247
P + YT +I +G ++ A +F+ + + PN+ T IM+ + GL
Sbjct: 446 GSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLA 505
Query: 248 EAMKLFQEM 256
EA KLF EM
Sbjct: 506 EASKLFGEM 514
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 1/124 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PDI +Y V++ R + E A + L +G P+ TY +++ + G
Sbjct: 449 MDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEAS 508
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F +++ K Y PN Y ++ R +T + +++M RG + L L
Sbjct: 509 KLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEML 568
Query: 172 CSAG 175
G
Sbjct: 569 SDDG 572
>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Glycine max]
Length = 1024
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 151/336 (44%), Gaps = 41/336 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV Y + L +A +E D++D MRS+ P++V Y +L
Sbjct: 270 PDTVFYNRMVSGLCEASLFQEAMDILDRMRSIS---------------CIPNVVTYRILL 314
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ C+ + Q +L + +G P+ + ++ Y+ Y+ F+K+ K
Sbjct: 315 SGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQ 374
Query: 124 PNALAYKVLVNTLWREGKT------DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
P L Y + + ++ + + A A +M G+V + + ARCLC AGK
Sbjct: 375 PGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKF 434
Query: 178 EEALMQMDKICKVANKPLV---VSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTC 233
++A + IC++ +K V +Y+ +I D+ ++ A +F +M KN P++ T
Sbjct: 435 DKAF---EIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTY 491
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
I++ ++ + GL ++A F EM D+ P++ T+ +++ A ++
Sbjct: 492 TILIDSFCKAGLIQQARNWFDEMLRDN------------CTPNVVTYTSLIHAYLKARKV 539
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
D +++ ML G N + +I +AG+++
Sbjct: 540 FDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQID 575
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 118/259 (45%), Gaps = 3/259 (1%)
Query: 3 SYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLE-PDIVVYN 61
S P+ V Y ++ +AG I + + M+ + + D E P+I+ Y
Sbjct: 554 SKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYG 613
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QK 120
A+++ + + E A +L + G +P+ Y +++ GK E F K+ ++
Sbjct: 614 ALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSER 673
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
Y PN Y L+N+L++E + D + + M + +Y D+ LC GK EEA
Sbjct: 674 GYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEA 733
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
M K+ +V P V++YT +I G I+ ++ M C+PN +T +++
Sbjct: 734 YRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINH 793
Query: 240 YLEHGLFEEAMKLFQEMAE 258
GL +EA +L EM +
Sbjct: 794 CCSTGLLDEAHRLLDEMKQ 812
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 77/349 (22%), Positives = 141/349 (40%), Gaps = 59/349 (16%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+ V + A L AG + F++I M S K F PD Y+ V+
Sbjct: 417 NKVNVSNFARCLCGAGKFDKAFEIICEMMS---KGFV------------PDDSTYSKVIG 461
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIP 124
+ E AF + +++K+ G PS TY ++++ G +F + ++ + P
Sbjct: 462 FLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTP 521
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N + Y L++ + K +A E M G + Y L C AG Q+
Sbjct: 522 NVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAG-------QI 574
Query: 185 DKICKV-----------------------ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
DK C++ P +++Y L+ + ++ A + +
Sbjct: 575 DKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDT 634
Query: 222 MK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
M N C PN + + ++ + + G E A ++F +M+E R Y P++YT+
Sbjct: 635 MSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSE------RGY------CPNLYTY 682
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++++++ EKR D + V +ML + N + MI + GK E
Sbjct: 683 SSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTE 731
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/358 (18%), Positives = 145/358 (40%), Gaps = 60/358 (16%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y ++ L +A ++E +++D+M EP+ +VY+A++
Sbjct: 607 PNIITYGALVDGLCKANRVEEAHELLDTMSV---------------NGCEPNQIVYDALI 651
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + E A V ++ ++G P+ TY ++ + + +LV + K ++ S
Sbjct: 652 DGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCT 711
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y +++ L + GKT+EA + ME G + Y + GK E+ L
Sbjct: 712 PNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLEL 771
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTC---------- 233
+C P ++Y LI C +G + A + ++MK P ++
Sbjct: 772 YRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGFNR 831
Query: 234 ------------------------NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
I++ +++ G E A+ L +E++ +
Sbjct: 832 EFITSIGLLDELSENESVPVESLYRILIDNFIKAGRLEGALNLLEEISSSPS-------- 883
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
L + + Y + +++++ + + D +Y M++ + + +I +R GK
Sbjct: 884 --LAVANKYLYTSLIESLSHASKVDKAFELYASMINKNVVPELSTFVHLIKGLTRVGK 939
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 5/198 (2%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N ++ C R W A L +LK G K S TTY +++V L K + + R++
Sbjct: 174 NFLIQKCCRNGMWNVALEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSN 233
Query: 121 S-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
S + + +L + G+ +A+S +E E V Y + LC A +E
Sbjct: 234 SGFRMDGCTLGCFAYSLCKAGRCGDALSLLEKEE---FVPDTVFYNRMVSGLCEASLFQE 290
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCSPNLVTCNIMVK 238
A+ +D++ ++ P VV+Y L+ CL G + I + M C PN N +V
Sbjct: 291 AMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVH 350
Query: 239 AYLEHGLFEEAMKLFQEM 256
AY + + A KLF++M
Sbjct: 351 AYCKSRDYSYAYKLFKKM 368
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/341 (19%), Positives = 137/341 (40%), Gaps = 50/341 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLER---- 48
PD Y + L A +++ F + + M+ L K G +++
Sbjct: 451 PDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNW 510
Query: 49 WDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+D L P++V Y ++++A ++ ++ A + + + +G KP+ TY +++
Sbjct: 511 FDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCK 570
Query: 105 CGKYNLVYEFFRKVQKSY-----------------IPNALAYKVLVNTLWREGKTDEAVS 147
G+ + + + ++Q PN + Y LV+ L + + +EA
Sbjct: 571 AGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHE 630
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
++ M G + +Y L C GK E A K+ + P + +Y+ LI +
Sbjct: 631 LLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLF 690
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
+ + ++M +N C+PN+V M+ + G EEA +L +M E +
Sbjct: 691 KEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCY---- 746
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
P++ T+ M+D + + +Y+ M G
Sbjct: 747 --------PNVITYTAMIDGFGKIGKIEQCLELYRDMCSKG 779
Score = 44.7 bits (104), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 81/211 (38%), Gaps = 25/211 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDP 51
YP+ + Y ++ G+ G I++ ++ M R L TG L+
Sbjct: 746 YPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHR 805
Query: 52 RLEP--------DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
L+ I Y ++ R ++ + +L +L + P + Y ++++ +
Sbjct: 806 LLDEMKQTYWPRHISSYRKIIEGFNR--EFITSIGLLDELSENESVPVESLYRILIDNFI 863
Query: 104 ACGKYNLVYEFFRKVQKS---YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
G+ ++ S + N Y L+ +L K D+A M + +V
Sbjct: 864 KAGRLEGALNLLEEISSSPSLAVANKYLYTSLIESLSHASKVDKAFELYASMINKNVVPE 923
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVA 191
+ + L + L GK +EAL D IC++
Sbjct: 924 LSTFVHLIKGLTRVGKWQEALQLSDSICQMV 954
>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
Length = 667
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 128/269 (47%), Gaps = 15/269 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+P+++ + ++N R + A +L ++ + G +P+ TYG +++ M G
Sbjct: 174 KPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALN 233
Query: 114 FFRKVQK-SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
RK+++ S I PN + Y +++ LW++G+ +A + +M+ +GI + Y +
Sbjct: 234 LLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGF 293
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
CS+G+ EA + ++ + P VV+++ LI A + G A ++N+M PN
Sbjct: 294 CSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNT 353
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T N M+ + + + A ++F MA KG PD+ TF+ ++D
Sbjct: 354 ITYNSMIDGFSKQNRLDAAERMFYLMA-----------TKGCS-PDVITFSILIDGYCGA 401
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
KR DD + M GL N + +I
Sbjct: 402 KRVDDGMKLLHEMSRRGLVANTITYTTLI 430
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 126/259 (48%), Gaps = 17/259 (6%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNT 135
A ++ + G PS T+ ++ + + + FF ++ K PN +A+ L+N
Sbjct: 130 ALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQICK---PNVIAFTTLMNG 186
Query: 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVAN-KP 194
L REG+ EAV+ ++ M G+ + Y + +C G AL + K+ +V+ KP
Sbjct: 187 LCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKP 246
Query: 195 LVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253
VV Y+ +I G +A +F++M+ SPNL T N M+ + G + EA +L
Sbjct: 247 NVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLL 306
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK 313
+EM +++K + PD+ TF+ +++A E ++ + E +Y ML G+ N
Sbjct: 307 REM----------FERK--MSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTI 354
Query: 314 RHLRMILDASRAGKVELLE 332
+ MI S+ +++ E
Sbjct: 355 TYNSMIDGFSKQNRLDAAE 373
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 146/326 (44%), Gaps = 30/326 (9%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E ++ ++ PD+V ++ ++NA V+ ++ A + ++ +G P+ TY +++
Sbjct: 308 EMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQN 367
Query: 107 KYNLVYE-FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ + F+ K P+ + + +L++ + D+ + + +M RRG+V + Y
Sbjct: 368 RLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYT 427
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-- 223
L C G AL + ++ P VV+ L+ ++G +++A +F M+
Sbjct: 428 TLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKS 487
Query: 224 ----------NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV 273
N P++ T NI++ + G F EA +L++EM +GLV
Sbjct: 488 KMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPH-----------RGLV 536
Query: 274 IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLE 332
PD T+N+++D + R D+ ++ M G + +I + G+V + LE
Sbjct: 537 -PDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLE 595
Query: 333 ITWEHLAR---ADRITPPALIKERFC 355
+ E R A+ IT LI FC
Sbjct: 596 VFCEMGRRGIVANAITYRTLI-HGFC 620
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 126/267 (47%), Gaps = 9/267 (3%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + + P++ YN ++N +W A +L+++ ++ P T+ +++ ++ G
Sbjct: 273 EMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEG 332
Query: 107 KYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K+ E + + + + IPN + Y +++ ++ + D A M +G +
Sbjct: 333 KFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFS 392
Query: 166 DLARCLCSAGKCEEA---LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
L C A + ++ L +M + VAN ++YT LI GN+ A + +M
Sbjct: 393 ILIDGYCGAKRVDDGMKLLHEMSRRGLVAN---TITYTTLIHGFCQLGNLNAALDLLQEM 449
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
+ PN+VTCN ++ +G ++A+++F+ M + ++ + V PD+ T+N
Sbjct: 450 ISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFND-VEPDVQTYN 508
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGL 308
++ E ++ + E +Y+ M H GL
Sbjct: 509 ILICGLINEGKFSEAEELYEEMPHRGL 535
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 98/245 (40%), Gaps = 25/245 (10%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L + + Y +++ + A +LQ++ G P+ T +++ + GK
Sbjct: 419 LVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDAL 478
Query: 113 EFFRKVQKSYI------------PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
E F+ +QKS + P+ Y +L+ L EGK EA E+M RG+V
Sbjct: 479 EMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPD 538
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y + LC + +EA D + P VV++T LI G + + +F
Sbjct: 539 TITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFC 598
Query: 221 QM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
+M + N +T ++ + + G A+ +FQEM V PD T
Sbjct: 599 EMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSG------------VYPDTIT 646
Query: 280 FNTML 284
ML
Sbjct: 647 IRNML 651
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 103/265 (38%), Gaps = 31/265 (11%)
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F V+ +P + + L+ + R + D +S ME R I + + L +C CS
Sbjct: 64 FGYMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTILIKCFCS 123
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTC 233
K AL KI K+ P +V+++ L+ + A + F+Q+ C PN++
Sbjct: 124 CSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQI---CKPNVIAF 180
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDS---NHIN---------------------REYDK 269
++ G EA+ L M ED N I R+ ++
Sbjct: 181 TTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEE 240
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK-- 327
+ P++ ++ ++D + R D + ++ M G+ N + MI +G+
Sbjct: 241 VSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWS 300
Query: 328 --VELLEITWEHLARADRITPPALI 350
LL +E D +T LI
Sbjct: 301 EAQRLLREMFERKMSPDVVTFSVLI 325
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 16/146 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT+ Y S+ L + + E + DSM S K F PD+V + ++
Sbjct: 537 PDTITYNSVIDGLCKQSRLDEATQMFDSMGS---KGF------------SPDVVTFTTLI 581
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + + V ++ ++G +A TY ++ G N + F+++ S +
Sbjct: 582 NGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVY 641
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAV 149
P+ + + ++ LW + + AV +
Sbjct: 642 PDTITIRNMLTGLWSKEELKRAVQCL 667
>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g01110-like [Cucumis sativus]
Length = 749
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 128/291 (43%), Gaps = 14/291 (4%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE-F 114
DIV YN ++NA R E AF +L +G +P TY ++ + GKY+ +
Sbjct: 291 DIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVL 350
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+Q PNA Y L+ + R EA ++M RRG++ + L L
Sbjct: 351 IEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARN 410
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTC 233
G +ALM ++ + P V YT LI +G + +A + ++M C ++VT
Sbjct: 411 GHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTY 470
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N + + +F +A LF EM E +G+V PD YTF T++ +
Sbjct: 471 NTFLNGLCKKKMFADADMLFNEMVE-----------RGMV-PDFYTFTTLIRGYCKDGNM 518
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI 344
D +++ M+ L + + +I +AG++ + W+ + R D I
Sbjct: 519 DKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDII 569
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 127/313 (40%), Gaps = 37/313 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V++ S+ L + GH L+ + R + + + PD V+Y ++
Sbjct: 395 PDLVSFSSLIGVLARNGH---LYQALMHFREMERSG------------IVPDNVIYTILI 439
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNLVYEFFRKVQ 119
+ R A + ++ +G TY GL + M A + F V+
Sbjct: 440 DGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFA----DADMLFNEMVE 495
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ +P+ + L+ ++G D+A++ E M R + Y L C AG+
Sbjct: 496 RGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGR 555
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A D + + P +SY ++ SG + A + +QM + PNLVTCN ++K
Sbjct: 556 AKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIK 615
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
Y G +A + +M + +IPD +++NT++D E + +
Sbjct: 616 GYCRSGDMPKAYEYLSKMISNG------------IIPDSFSYNTLIDGYLKEANLEKAFI 663
Query: 299 VYKRMLHHGLHFN 311
+ M GL FN
Sbjct: 664 LINEMEKRGLQFN 676
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 76/371 (20%), Positives = 152/371 (40%), Gaps = 41/371 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKK--------------------KFKT 43
+ D V Y ++ + G ++E F +++S S + + K
Sbjct: 289 FADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKD 348
Query: 44 GTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
+E L P+ YN +L RR A + ++ ++G P ++ ++ V+
Sbjct: 349 VLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLA 408
Query: 104 ACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G FR++++S I P+ + Y +L++ R G +A+ ++M RG
Sbjct: 409 RNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVV 468
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y LC +A M +++ + P ++T LI+ GN+ A +F M
Sbjct: 469 TYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAM 528
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
+ P+ VT N ++ + + G A +L+ +M +IPD ++
Sbjct: 529 VRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKD------------IIPDHISYG 576
Query: 282 TMLDA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
T+L+ C++ + L L +ML G+ N +I R+G + +E+L++
Sbjct: 577 TVLNGFCSSGLLPEALNLC-DQMLEKGIRPNLVTCNTLIKGYCRSGD---MPKAYEYLSK 632
Query: 341 --ADRITPPAL 349
++ I P +
Sbjct: 633 MISNGIIPDSF 643
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 96/222 (43%), Gaps = 22/222 (9%)
Query: 5 PDTVAYRSIAVTL---GQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
PD V Y ++ G+ G KEL+D D +R + PD + Y
Sbjct: 535 PDKVTYNTLIDGFCKAGEMGRAKELWD--DMIRK----------------DIIPDHISYG 576
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQK 120
VLN A + Q+ ++G +P+ T +++ G YE+ K +
Sbjct: 577 TVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISN 636
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
IP++ +Y L++ +E ++A + +ME+RG+ + Y + C+ GK +EA
Sbjct: 637 GIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEA 696
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+ K+ ++ P +Y+ LI + N++ A ++M
Sbjct: 697 EQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEM 738
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/256 (19%), Positives = 108/256 (42%), Gaps = 14/256 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD + ++ + + A + + + + KP TY +++ G+ E
Sbjct: 500 PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKEL 559
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ ++K IP+ ++Y ++N G EA++ + M +GI + L + C
Sbjct: 560 WDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCR 619
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+G +A + K+ P SY LI L N++ A + N+M K N++T
Sbjct: 620 SGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIIT 679
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N+++ + G +EA ++ ++M E + PD T++++++ ++
Sbjct: 680 YNLILNGFCAEGKMQEAEQVLRKMIEIG------------INPDGATYSSLINGHVSQDN 727
Query: 293 WDDLELVYKRMLHHGL 308
+ + ML GL
Sbjct: 728 MKEAFRFHDEMLQRGL 743
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 66/325 (20%), Positives = 134/325 (41%), Gaps = 32/325 (9%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ- 119
N +L VR + A+ + ++ + G + + T +++ + K+ V F ++
Sbjct: 226 NKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEG 285
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K + + Y L+N REG +EA + RG+ Y + LC GK +
Sbjct: 286 KGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDR 345
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A + ++ ++ P +Y L+ NI A IF++M + P+LV+ + ++
Sbjct: 346 AKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIG 405
Query: 239 AYLEHGLFEEAMKLFQEMAE------------------------DSNHINREYDKKGLVI 274
+G +A+ F+EM D+ + E +G +
Sbjct: 406 VLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFM 465
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEIT 334
D+ T+NT L+ +K + D ++++ M+ G+ + +I + G ++
Sbjct: 466 -DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNL 524
Query: 335 WEHLARA----DRITPPALIKERFC 355
+E + R D++T LI + FC
Sbjct: 525 FEAMVRTNLKPDKVTYNTLI-DGFC 548
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 77/175 (44%), Gaps = 21/175 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
PD ++Y ++ +G + E ++ D M +L K ++G + +
Sbjct: 570 PDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEY 629
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L PD YN +++ ++ E AF ++ +++++G + + TY L++ A
Sbjct: 630 LSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCA 689
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
GK + RK+ + I P+ Y L+N + EA ++M +RG+V
Sbjct: 690 EGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLV 744
>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Cucumis sativus]
Length = 749
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 128/291 (43%), Gaps = 14/291 (4%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE-F 114
DIV YN ++NA R E AF +L +G +P TY ++ + GKY+ +
Sbjct: 291 DIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVL 350
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+Q PNA Y L+ + R EA ++M RRG++ + L L
Sbjct: 351 IEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARN 410
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTC 233
G +ALM ++ + P V YT LI +G + +A + ++M C ++VT
Sbjct: 411 GHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTY 470
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N + + +F +A LF EM E +G+V PD YTF T++ +
Sbjct: 471 NTFLNGLCKKKMFADADMLFNEMVE-----------RGMV-PDFYTFTTLIRGYCKDGNM 518
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI 344
D +++ M+ L + + +I +AG++ + W+ + R D I
Sbjct: 519 DKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDII 569
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 126/313 (40%), Gaps = 37/313 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V++ S+ L + GH L+ + R + + + PD V+Y ++
Sbjct: 395 PDLVSFSSLIGVLARNGH---LYQALMHFREMERSG------------IVPDNVIYTILI 439
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNLVYEFFRKVQ 119
+ R A + ++ +G TY GL + M A F V+
Sbjct: 440 DGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADM----LFNEMVE 495
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ +P+ + L+ ++G D+A++ E M R + Y L C AG+
Sbjct: 496 RGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGR 555
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A D + + P +SY ++ SG + A + +QM + PNLVTCN ++K
Sbjct: 556 AKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIK 615
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
Y G +A + +M + +IPD +++NT++D E + +
Sbjct: 616 GYCRSGDMPKAYEYLSKMISNG------------IIPDSFSYNTLIDGYLKEANLEKAFI 663
Query: 299 VYKRMLHHGLHFN 311
+ M GL FN
Sbjct: 664 LINEMEKRGLQFN 676
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/371 (20%), Positives = 152/371 (40%), Gaps = 41/371 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKK--------------------KFKT 43
+ D V Y ++ + G ++E F +++S S + + K
Sbjct: 289 FADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKD 348
Query: 44 GTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
+E L P+ YN +L RR A + ++ ++G P ++ ++ V+
Sbjct: 349 VLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLA 408
Query: 104 ACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G FR++++S I P+ + Y +L++ R G +A+ ++M RG
Sbjct: 409 RNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVV 468
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y LC +A M +++ + P ++T LI+ GN+ A +F M
Sbjct: 469 TYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAM 528
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
+ P+ VT N ++ + + G A +L+ +M +IPD ++
Sbjct: 529 VRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKD------------IIPDHISYG 576
Query: 282 TMLDA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
T+L+ C++ + L L +ML G+ N +I R+G + +E+L++
Sbjct: 577 TVLNGFCSSGLLPEALNLC-DQMLEKGIRPNLVTCNTLIKGYCRSGD---MPKAYEYLSK 632
Query: 341 --ADRITPPAL 349
++ I P +
Sbjct: 633 MISNGIIPDSF 643
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 96/222 (43%), Gaps = 22/222 (9%)
Query: 5 PDTVAYRSIAVTL---GQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
PD V Y ++ G+ G KEL+D D +R + PD + Y
Sbjct: 535 PDKVTYNTLIDGFCKAGEMGRAKELWD--DMIRK----------------DIIPDHISYG 576
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQK 120
VLN A + Q+ ++G +P+ T +++ G YE+ K +
Sbjct: 577 TVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISN 636
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
IP++ +Y L++ +E ++A + +ME+RG+ + Y + C+ GK +EA
Sbjct: 637 GIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEA 696
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+ K+ ++ P +Y+ LI + N++ A ++M
Sbjct: 697 EQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEM 738
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/256 (19%), Positives = 108/256 (42%), Gaps = 14/256 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD + ++ + + A + + + + KP TY +++ G+ E
Sbjct: 500 PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKEL 559
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ ++K IP+ ++Y ++N G EA++ + M +GI + L + C
Sbjct: 560 WDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCR 619
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+G +A + K+ P SY LI L N++ A + N+M K N++T
Sbjct: 620 SGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIIT 679
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N+++ + G +EA ++ ++M E + PD T++++++ ++
Sbjct: 680 YNLILNGFCAEGKMQEAEQVLRKMIEIG------------INPDGATYSSLINGHVSQDN 727
Query: 293 WDDLELVYKRMLHHGL 308
+ + ML GL
Sbjct: 728 MKEAFRFHDEMLQRGL 743
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 66/325 (20%), Positives = 134/325 (41%), Gaps = 32/325 (9%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ- 119
N +L VR + A+ + ++ + G + + T +++ + K+ V F ++
Sbjct: 226 NKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEG 285
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K + + Y L+N REG +EA + RG+ Y + LC GK +
Sbjct: 286 KGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDR 345
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A + ++ ++ P +Y L+ NI A IF++M + P+LV+ + ++
Sbjct: 346 AKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIG 405
Query: 239 AYLEHGLFEEAMKLFQEMAE------------------------DSNHINREYDKKGLVI 274
+G +A+ F+EM D+ + E +G +
Sbjct: 406 VLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFM 465
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEIT 334
D+ T+NT L+ +K + D ++++ M+ G+ + +I + G ++
Sbjct: 466 -DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNL 524
Query: 335 WEHLARA----DRITPPALIKERFC 355
+E + R D++T LI + FC
Sbjct: 525 FEAMVRTNLKPDKVTYNTLI-DGFC 548
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 77/175 (44%), Gaps = 21/175 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
PD ++Y ++ +G + E ++ D M +L K ++G + +
Sbjct: 570 PDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEY 629
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L PD YN +++ ++ E AF ++ +++++G + + TY L++ A
Sbjct: 630 LSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCA 689
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
GK + RK+ + I P+ Y L+N + EA ++M +RG+V
Sbjct: 690 EGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLV 744
>gi|302801478|ref|XP_002982495.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
gi|300149594|gb|EFJ16248.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
Length = 448
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 149/341 (43%), Gaps = 38/341 (11%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTG-------------TL 46
S P +AY+++ L + G +E +V+ M +S+P T +
Sbjct: 110 GSLPHVLAYKTMLDCLIKTGKTREASEVVGEMIKKSVPDGMTYTALISVLCKHNRADDAM 169
Query: 47 ERWDPRLEPDIV----VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
+ +D +E +IV VY ++L A R ++ +GA+ + ++ Q+G PSA+TYGL++ +
Sbjct: 170 KVFDIMVEKEIVPNLDVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCL 229
Query: 103 LACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEA-VSAVEDMERRGIVGS 160
G+ L Y+ ++ + ++P+ Y L+ G+ EA V E +E +
Sbjct: 230 CNGGRSYLAYDIHSSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKALLD 289
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
A +Y L LC A K EEAL + P + +Y LI + + A +F
Sbjct: 290 AGIYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFR 349
Query: 221 QM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
M K F SPN + + + + G EA + FQ+ E +PD
Sbjct: 350 VMEEKGF-SPNTMIYSTFIDGLCKVGKINEAHEFFQQSVERG------------CVPDNV 396
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
T+N ++ R D+ +Y+ M G + A R LR +
Sbjct: 397 TYNALIRGLFGANRMDEAHRLYREMGERG--YIADRSLRTL 435
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/347 (20%), Positives = 131/347 (37%), Gaps = 58/347 (16%)
Query: 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR 116
++ YNA+L A + ++G F G P Y +++ ++ GK E
Sbjct: 80 MLAYNAILKALMCSGDFDGGFKFSDIAVGDGSLPHVLAYKTMLDCLIKTGKTREASEVVG 139
Query: 117 KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVE-------------------------- 150
++ K +P+ + Y L++ L + + D+A+ +
Sbjct: 140 EMIKKSVPDGMTYTALISVLCKHNRADDAMKVFDIMVEKEIVPNLDVYTSLLAAHCRTRK 199
Query: 151 ---------DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
+M +RG SA+ Y L RCLC+ G+ A + + P +Y
Sbjct: 200 LDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSMRSRGHVPDENTYAS 259
Query: 202 LIQACLDSGNIQNAAYIFNQM----KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
LI C +G I A +F ++ K + N++++ EEA+++ M
Sbjct: 260 LIYGCCMAGRITEAKVLFKEVLEGEKALLDAGIY--NVLIEGLCRASKVEEALEVTAGMV 317
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
+ KG IP + T+N ++ D +++ M G N +
Sbjct: 318 D-----------KG-CIPTLQTYNALIMGFFKANEVDKALQLFRVMEEKGFSPNTMIYST 365
Query: 318 MILDASRAGKV----ELLEITWEHLARADRITPPALIKERF-CNRLE 359
I + GK+ E + + E D +T ALI+ F NR++
Sbjct: 366 FIDGLCKVGKINEAHEFFQQSVERGCVPDNVTYNALIRGLFGANRMD 412
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 123/285 (43%), Gaps = 17/285 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD+V +++ K+ + Q+L+ G Y +++ ++ G ++ ++
Sbjct: 42 DPDVVTCGLLVDKFCEMKRVGEVCELFQELESNGVAVGMLAYNAILKALMCSGDFDGGFK 101
Query: 114 FFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F V +P+ LAYK +++ L + GKT EA V +M ++ V Y L LC
Sbjct: 102 FSDIAVGDGSLPHVLAYKTMLDCLIKTGKTREASEVVGEMIKKS-VPDGMTYTALISVLC 160
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
+ ++A+ D + + P + YT L+ A + + A +F +M + P+
Sbjct: 161 KHNRADDAMKVFDIMVEKEIVPNLDVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSAS 220
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T ++++ G A + M + +PD T+ +++ C
Sbjct: 221 TYGLLLRCLCNGGRSYLAYDIHSSMRSRGH------------VPDENTYASLIYGCCMAG 268
Query: 292 RWDDLELVYKRMLH-HGLHFNAKRHLRMILDASRAGKV-ELLEIT 334
R + ++++K +L +A + +I RA KV E LE+T
Sbjct: 269 RITEAKVLFKEVLEGEKALLDAGIYNVLIEGLCRASKVEEALEVT 313
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/211 (17%), Positives = 87/211 (41%), Gaps = 15/211 (7%)
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
V + Y P+ + +LV+ + E +++E G+ Y + + L +G
Sbjct: 37 VGEGYDPDVVTCGLLVDKFCEMKRVGEVCELFQELESNGVAVGMLAYNAILKALMCSGDF 96
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMV 237
+ D + P V++Y ++ + +G + A+ + +M P+ +T ++
Sbjct: 97 DGGFKFSDIAVGDGSLPHVLAYKTMLDCLIKTGKTREASEVVGEMIKKSVPDGMTYTALI 156
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+H ++AMK+F M E ++P++ + ++L A ++ D
Sbjct: 157 SVLCKHNRADDAMKVFDIMVEKE------------IVPNLDVYTSLLAAHCRTRKLDGAY 204
Query: 298 LVYKRMLHHGLHFNAKRH---LRMILDASRA 325
++ M+ G +A + LR + + R+
Sbjct: 205 RLFVEMIQRGYGPSASTYGLLLRCLCNGGRS 235
>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
Length = 425
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/327 (21%), Positives = 142/327 (43%), Gaps = 29/327 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + L + G F++++ M +LEP +++YN ++
Sbjct: 14 PDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQ---------------GKLEPGVLIYNTII 58
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + K + A + ++++ +G +P+ TY ++ + G+++ +++
Sbjct: 59 DGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKIN 118
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + L++ +EGK EA ++M +R I S Y L C + +EA
Sbjct: 119 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 178
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + P VV+Y LI+ ++ +F +M + N VT NI+++ +
Sbjct: 179 FEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 238
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + A ++F+EM D V P+I T+NT+LD + + +V++
Sbjct: 239 AGDCDMAQEIFKEMVSDG------------VPPNIMTYNTLLDGLCKNGKLEKAMVVFEY 286
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + + MI +AGKVE
Sbjct: 287 LQRSKMEPTIYTYNIMIEGMCKAGKVE 313
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 134/290 (46%), Gaps = 14/290 (4%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD+V Y V+N +R + AF +L +++Q +P Y +++ + +
Sbjct: 13 QPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALN 72
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F++++ I PN + Y L++ L G+ +A + DM R I + L
Sbjct: 73 LFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFV 132
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
GK EA D++ K + P +V+Y+ LI + A +F M C P++V
Sbjct: 133 KEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVV 192
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++K + ++ EE M++F+EM++ +GLV + T+N ++
Sbjct: 193 TYNTLIKGFCKYKRVEEGMEVFREMSQ-----------RGLV-GNTVTYNILIQGLFQAG 240
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
D + ++K M+ G+ N + ++ + GK+E + +E+L R+
Sbjct: 241 DCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS 290
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 132/270 (48%), Gaps = 15/270 (5%)
Query: 79 VLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLW 137
++ ++ +G +P TYG+V+ + G +L + K+++ + P L Y +++ L
Sbjct: 3 LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC 62
Query: 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV 197
+ D+A++ ++ME +GI + Y L CLC+ G+ +A + + + P V
Sbjct: 63 KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 122
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+++ LI A + G + A ++++M K P++VT + ++ + H +EA ++F+ M
Sbjct: 123 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 182
Query: 257 AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316
S H PD+ T+NT++ KR ++ V++ M GL N +
Sbjct: 183 V--SKH----------CFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYN 230
Query: 317 RMILDASRAGKVELLEITWEHLARADRITP 346
+I +AG ++ + ++ + +D + P
Sbjct: 231 ILIQGLFQAGDCDMAQEIFKEMV-SDGVPP 259
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 103/207 (49%), Gaps = 8/207 (3%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V YN ++ + K+ E V +++ Q+G + TY ++++ + G ++ E
Sbjct: 189 PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 248
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F++ V PN + Y L++ L + GK ++A+ E ++R + + Y + +C
Sbjct: 249 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 308
Query: 174 AGKCEEALMQMDKICKVA---NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PN 229
AGK E+ D C ++ KP VV+Y +I G+ + A +F +MK + PN
Sbjct: 309 AGKVEDGW---DLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 365
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEM 256
N +++A L G E + +L +EM
Sbjct: 366 SGCYNTLIRARLRDGDREASAELIKEM 392
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/338 (22%), Positives = 145/338 (42%), Gaps = 41/338 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y S+ L G + ++ M +ER ++ PD+ ++A++
Sbjct: 84 PNVVTYSSLISCLCNYGRWSDASRLLSDM------------IER---KINPDVFTFSALI 128
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNLVYEFFRKVQ 119
+A V+ + A + ++ ++ PS TY G M L K ++EF V
Sbjct: 129 DAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQ--MFEFM--VS 184
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K P+ + Y L+ + + +E + +M +RG+VG+ Y L + L AG C+
Sbjct: 185 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 244
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A ++ P +++Y L+ +G ++ A +F + ++ P + T NIM++
Sbjct: 245 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 304
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G E+ LF ++ KG V PD+ +NTM+ + ++ +
Sbjct: 305 GMCKAGKVEDGWDLFCNLS-----------LKG-VKPDVVAYNTMISGFCRKGSKEEADA 352
Query: 299 VYKRMLHHGLHFNAKRHLRMI----LDASRAGKVELLE 332
++K M G N+ + +I D R EL++
Sbjct: 353 LFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIK 390
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 79/215 (36%), Gaps = 56/215 (26%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTL----- 46
+PD V Y ++ + ++E +V M L + F+ G
Sbjct: 188 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 247
Query: 47 ---ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
E + P+I+ YN +L+ + + E A V + L++ +P+ TY +++E M
Sbjct: 248 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 307
Query: 104 ACGK----------------------YN-LVYEFFRKVQK-------------SYIPNAL 127
GK YN ++ F RK K +PN+
Sbjct: 308 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 367
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
Y L+ R+G + + +++M G G A+
Sbjct: 368 CYNTLIRARLRDGDREASAELIKEMRSCGFAGDAS 402
>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/336 (21%), Positives = 143/336 (42%), Gaps = 63/336 (18%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV----------- 101
EPD+ Y +++ ACV ++ A V ++++++G KP+ TY +++ V
Sbjct: 29 FEPDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKI 88
Query: 102 ---------------------MLACGKYNLVYE-----FFRKVQKSYIPNALAYKVLVNT 135
++ C + +YE F ++P+ + Y L++
Sbjct: 89 TGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDV 148
Query: 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL 195
+ + EA+ + +ME G S Y L G EEA+ +++ + K
Sbjct: 149 YGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLD 208
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
V +YT ++ + +G ++A +F +M+ C PN+ T N ++K + G F E MK+F+
Sbjct: 209 VFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVFE 268
Query: 255 E------------------------MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
E M + + + +E + G V P+ T+NT++ A +
Sbjct: 269 EIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFV-PERDTYNTLISAYSRC 327
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+D +YKRML G+ + + ++ +R G
Sbjct: 328 GSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGG 363
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 15/248 (6%)
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY 122
++N + + A +L L + G +P Y ++ ++ G+Y F+K+++
Sbjct: 4 IINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEEG 63
Query: 123 I-PNALAYKVLVNTLWREGKTDEAVSAV-EDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
P + Y V++N + G ++ + E M+ GI+ Y L C EEA
Sbjct: 64 CKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEA 123
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKA 239
+ + + P V+Y L+ S I+ A + +M+ N CSP++VT N ++ A
Sbjct: 124 AAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISA 183
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
Y GL EEAM+L +M E +G+ + D++T+ ML + + V
Sbjct: 184 YARDGLLEEAMELKNQMVE-----------RGIKL-DVFTYTAMLSGFVRTGKDESAMRV 231
Query: 300 YKRMLHHG 307
++ M G
Sbjct: 232 FEEMRTAG 239
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 112/262 (42%), Gaps = 22/262 (8%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLER 48
M PD V Y ++ G++ IKE +V+ M SL + G LE
Sbjct: 133 MGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEE 192
Query: 49 W--------DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
+ ++ D+ Y A+L+ VR + E A V ++++ G KP+ T+ +++
Sbjct: 193 AMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIK 252
Query: 101 VMLACGKYNLVYEFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+ GK+ + + F +++ +P+ + + L+ + G E ++M+R G V
Sbjct: 253 MHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVP 312
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219
Y L G ++A+ ++ P + +Y ++ A G + + I
Sbjct: 313 ERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKIL 372
Query: 220 NQMKN-FCSPNLVTCNIMVKAY 240
+M++ C PN +T ++ AY
Sbjct: 373 AEMQDGMCKPNELTHCSLLHAY 394
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 70/353 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLER---- 48
PD V + ++ GQ G E+ V M+ +L + G+ ++
Sbjct: 277 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAM 336
Query: 49 ----WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG-------- 96
D + PD+ YNAVL A R WE + +L +++ KP+ T+
Sbjct: 337 YKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELTHCSLLHAYAN 396
Query: 97 ------------------------LVMEVMLACGKYNLVYE----FFRKVQKSYIPNALA 128
L+ ++L K +L+ E F +K + P+
Sbjct: 397 GKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEAERAFLELKRKGFSPDLST 456
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
++ R + + M+ G S A Y L + E + + +I
Sbjct: 457 LNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEVLKEIL 516
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFE 247
KP ++SY +I A +G ++ A++IF++M+ + P+++T N V +Y +FE
Sbjct: 517 AKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAADSMFE 576
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELV 299
EA+ + M + P+ T+N+++D C +R D ++ +
Sbjct: 577 EAIDVVCYMIKHGCK------------PNQNTYNSVIDGYCKLNRRDDAIKFI 617
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 14/201 (6%)
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
V++N L +EGK A S + ++ + G Y L S G+ EA+M K+ +
Sbjct: 3 VIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEE 62
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEE 248
KP +++Y ++ G N +F MKN P+ T N ++ L+EE
Sbjct: 63 GCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEE 122
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
A +F++M K +PD T+NT+LD +R + V + M +G
Sbjct: 123 AAAVFEDM------------KSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGC 170
Query: 309 HFNAKRHLRMILDASRAGKVE 329
+ + +I +R G +E
Sbjct: 171 SPSIVTYNSLISAYARDGLLE 191
>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/328 (22%), Positives = 155/328 (47%), Gaps = 29/328 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P AY S+ + L G +++ ++ + M + + + PD V Y+A++
Sbjct: 188 PTAHAYNSMIIMLMHEGEYEKVHELYNEMSN--------------EGQCFPDTVTYSALI 233
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+A + + + A W+L ++K G +P+A Y ++M ++ + F +++ Y
Sbjct: 234 SAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCR 293
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y L+ L + G+ DEA + +M R G L ++ L AG+ ++A+
Sbjct: 294 PDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKL 353
Query: 184 MDKICKVANKPLVVSYTGLIQACLDS-GNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYL 241
+++ + P VV+Y +I+A +S + + F +MK + SP+ T +I++ +
Sbjct: 354 FEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFC 413
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ E+AM L +EM D+KG P + +++DA KR+D +++
Sbjct: 414 KTNRTEKAMMLLEEM-----------DEKGFP-PCPAAYCSLIDALGKAKRYDLANELFQ 461
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + +A+ + MI +AG+++
Sbjct: 462 ELKENCGSSSARVYAVMIKHLGKAGRLD 489
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 146/305 (47%), Gaps = 35/305 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKE---LFDVIDSMRSLP-------------KKKFKTGTLER 48
PDTV ++ LG+AG + + LF+ ++++R +P + K + +
Sbjct: 329 PDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISS 388
Query: 49 WDPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
W R++ P Y+ +++ + + E A +L+++ ++G P Y +++ +
Sbjct: 389 WFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALG 448
Query: 104 ACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+Y+L E F++++++ +A Y V++ L + G+ D+AV ++M R G +
Sbjct: 449 KAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVY 508
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y L L AG +EAL M ++ P + SY ++ A +G A + M
Sbjct: 509 AYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNM 568
Query: 223 K-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
K + P+ V+ N ++ A G+FEEA KL +EM N I +Y D+ T++
Sbjct: 569 KQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEM----NAIGFDY--------DLITYS 616
Query: 282 TMLDA 286
++L+A
Sbjct: 617 SILEA 621
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 115/242 (47%), Gaps = 16/242 (6%)
Query: 71 KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV--QKSYIPNALA 128
K A + Q+K + +P+A Y ++ +++ G+Y V+E + ++ + P+ +
Sbjct: 169 KMISKAVAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVT 228
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
Y L++ + G+ D A+ + +M+ G+ +A +Y L L AL +++
Sbjct: 229 YSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMR 288
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFE 247
+P V +YT LI+ +G + A F++M + C P+ V N M+ + G +
Sbjct: 289 HQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLD 348
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK-RWDDLELVYKRMLHH 306
+A+KLF+EM + IP + T+NT++ A K R ++ ++RM
Sbjct: 349 DAIKLFEEM------------ETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGS 396
Query: 307 GL 308
G+
Sbjct: 397 GI 398
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 52/261 (19%), Positives = 104/261 (39%), Gaps = 28/261 (10%)
Query: 97 LVMEVMLACGKYNLVYEFFR--KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
LV EVM ++ +FFR +++Y + Y L+ L + E +++M R
Sbjct: 88 LVREVMKTDVGVSVKMQFFRWAARKRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVR 147
Query: 155 RGI-VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQ 213
+ V + D+ R L +A +A+ +I +P +Y +I + G +
Sbjct: 148 NPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYE 207
Query: 214 NAAYIFNQMKNF--CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNH--------- 262
++N+M N C P+ VT + ++ A+ + G + A+ L EM ++
Sbjct: 208 KVHELYNEMSNEGQCFPDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTML 267
Query: 263 ------INREYDKKGLV--------IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
++ + GL PD++T+ ++ R D+ + M G
Sbjct: 268 MALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGC 327
Query: 309 HFNAKRHLRMILDASRAGKVE 329
+ MI +AG+++
Sbjct: 328 RPDTVLMNNMINFLGKAGRLD 348
>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 162/375 (43%), Gaps = 49/375 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ +L +AG I D R L R +P + VYNA++
Sbjct: 212 PDAVTYTTMVSSLCKAGKI-------DDARELAG-------------RFKPSVPVYNALI 251
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + + E A +L ++ G P+ +Y ++ + G L + F ++ +
Sbjct: 252 DGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCD 311
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + L+ + GK EA+ + M + G + Y L LCS G EEAL
Sbjct: 312 ANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQV 371
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
D++ + P V +Y+ LI SG++ A+ +N+M + C PN+VT MV +
Sbjct: 372 CDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCK 431
Query: 243 HGLFEEAMKLFQEMAEDS---NHINREYDKKGL--------------------VIPDIYT 279
+ +F++A L ++M + N + KGL +P+I T
Sbjct: 432 NSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITT 491
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHL 338
+N +LDA ++++ +++ + L N + ++ SRAG + E L++ + L
Sbjct: 492 YNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKAL 551
Query: 339 ARA---DRITPPALI 350
R D IT +I
Sbjct: 552 VRGTAPDSITYNTMI 566
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 119/268 (44%), Gaps = 17/268 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P++ YN +L A + + + A + ++ +G P A TY ++ + GK +
Sbjct: 175 LIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDA- 233
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R++ + P+ Y L++ + +EG+ + A+ + +M G+ + Y + LC
Sbjct: 234 ---RELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLC 290
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
+G E A ++ + ++T LI+ C G + A ++ M ++ C PN+V
Sbjct: 291 VSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVV 350
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
N ++ +G EEA+++ +M ++ +P++ T++ ++D A
Sbjct: 351 AYNTLIHGLCSNGSLEEALQVCDQM------------QRSGCLPNVTTYSILIDGFAKSG 398
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMI 319
+ RM+ HG N + M+
Sbjct: 399 DLVGASETWNRMISHGCRPNVVTYTCMV 426
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 138/307 (44%), Gaps = 31/307 (10%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+P + +YN +L+A + +++ + +K+ G P+ TY ++++ + + + ++
Sbjct: 141 KPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHK 200
Query: 114 FFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG----SAALYYDLA 168
F ++ K P+A+ Y +V++L + GK D+A R + G S +Y L
Sbjct: 201 LFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDA---------RELAGRFKPSVPVYNALI 251
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
+C G+ E A+ + ++ P VVSY+ +I + SGN++ A +F QM C
Sbjct: 252 DGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCD 311
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
N+ T ++K G EA+ L++ M +D P++ +NT++
Sbjct: 312 ANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCE------------PNVVAYNTLIHGL 359
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITW----EHLARADR 343
+ ++ V +M G N + +I +++G + TW H R +
Sbjct: 360 CSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNV 419
Query: 344 ITPPALI 350
+T ++
Sbjct: 420 VTYTCMV 426
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/274 (20%), Positives = 113/274 (41%), Gaps = 23/274 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR---SLP-------------KKKFKTGTLER 48
P+ VAY ++ L G ++E V D M+ LP K G E
Sbjct: 347 PNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASET 406
Query: 49 WDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
W+ + P++V Y +++ + ++ A +++++ +G P+ T+ ++ +
Sbjct: 407 WNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCG 466
Query: 105 CGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ + ++Q +PN Y L++ L+R K +EA +++E R + +
Sbjct: 467 NGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVT 526
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + AG EAL K P ++Y +I A G ++ AA + ++
Sbjct: 527 YNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVS 586
Query: 224 NFCS--PNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
+ P+++T ++ EEAM +
Sbjct: 587 SMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDK 620
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 98/241 (40%), Gaps = 21/241 (8%)
Query: 111 VYEFFRKVQKS--YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
V FF + S + A Y+V++ L RE + D ++ M+ GI L+ +
Sbjct: 57 VLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICII 116
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
G E+AL +I + KP V Y L+ A L Q ++ M K+
Sbjct: 117 NGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLI 176
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE------------------DSNHINREYDK 269
PN+ T NI++KA ++ + A KLF EM+ + I+ +
Sbjct: 177 PNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL 236
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
G P + +N ++D E R + + M+ +G+ N + +I +G VE
Sbjct: 237 AGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVE 296
Query: 330 L 330
L
Sbjct: 297 L 297
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 2/157 (1%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+I YN +L+A R ++E AF + Q+++ + +P+ TY V+ G +
Sbjct: 487 PNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQL 546
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER-RGIVGSAALYYDLARCLC 172
F K + + P+++ Y +++ ++GK A VE + + Y L C
Sbjct: 547 FGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGAC 606
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS 209
+ EEA+ +DK P ++ L++ DS
Sbjct: 607 NWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFDS 643
>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
Length = 687
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 139/309 (44%), Gaps = 32/309 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD V + ++ L + E D M ++ P++V + +
Sbjct: 146 HPDVVTFTTLLHGLCVEDRVSEALDFFHQM---------------FETTCRPNVVTFTTL 190
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK--S 121
+N R + A +L ++ + G +P+ TYG +++ M G RK+++
Sbjct: 191 MNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSH 250
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
IPN + Y ++++L ++G+ +A + +M+ +GI Y + CS+G+ +A
Sbjct: 251 IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAE 310
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
+ ++ + P VV+Y LI A + G A ++++M PN +T + M+ +
Sbjct: 311 QLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGF 370
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD-LELV 299
+ + A +F MA KG P++ TFNT++D KR DD +EL+
Sbjct: 371 CKQNRLDAAEHMFYLMA-----------TKGCS-PNLITFNTLIDGYCGAKRIDDGMELL 418
Query: 300 YKRMLHHGL 308
++ M GL
Sbjct: 419 HE-MTETGL 426
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/339 (20%), Positives = 141/339 (41%), Gaps = 40/339 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD Y S+ V +G + ++ M LER ++ PD+V YNA+
Sbjct: 287 FPDLFTYNSMIVGFCSSGRWSDAEQLLQEM------------LER---KISPDVVTYNAL 331
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV-YEFFRKVQKSY 122
+NA V+ ++ A + ++ +G P+ TY +++ + + + F+ K
Sbjct: 332 INAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGC 391
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN + + L++ + D+ + + +M G+V Y L G AL
Sbjct: 392 SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALD 451
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK------------NFCSPNL 230
+ ++ P +V+ L+ D+G +++A +F M+ N P++
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDV 511
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T NI++ + G F EA +L++EM ++PD T+++M+D +
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRG------------IVPDTITYSSMIDGLCKQ 559
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
R D+ ++ M N +I +AG+V+
Sbjct: 560 SRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 123/267 (46%), Gaps = 15/267 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
DI +N ++ + A ++ + G P T+ ++ + + + +FF
Sbjct: 113 DIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFF 172
Query: 116 RKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
++ + + PN + + L+N L REG+ EAV+ ++ M G+ + Y + +C
Sbjct: 173 HQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKK 232
Query: 175 GKCEEALMQMDKICKVANK-PLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVT 232
G AL + K+ +V++ P VV Y+ +I + G +A +F +M+ P+L T
Sbjct: 233 GDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFT 292
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N M+ + G + +A +L QEM E + PD+ T+N +++A E +
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERK------------ISPDVVTYNALINAFVKEGK 340
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMI 319
+ + E +Y ML G+ N + MI
Sbjct: 341 FFEAEELYDEMLPRGIIPNTITYSSMI 367
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/374 (17%), Positives = 156/374 (41%), Gaps = 61/374 (16%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR--SLPKKKFKTGTL-----ERWD------- 50
P+ V + ++ L + G I E ++D M L + GT+ ++ D
Sbjct: 182 PNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNL 241
Query: 51 -------PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
+ P++V+Y+A++++ + + A + +++++G P TY ++
Sbjct: 242 LRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFC 301
Query: 104 ACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+ G+++ + +++ + I P+ + Y L+N +EGK EA ++M RGI+ +
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTI 361
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y + C + + A + P ++++ LI + I + + ++M
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421
Query: 223 -------------------------------------KNFCSPNLVTCNIMVKAYLEHGL 245
C P++VTC+ ++ ++G
Sbjct: 422 TETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLC-PDIVTCDTLLDGLCDNGK 480
Query: 246 FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
++A+++F+ M + ++ + G V PD+ T+N ++ E ++ + E +Y+ M H
Sbjct: 481 LKDALEMFKVMQKSKKDLDASHPFNG-VEPDVQTYNILISGLINEGKFLEAEELYEEMPH 539
Query: 306 HGLHFNAKRHLRMI 319
G+ + + MI
Sbjct: 540 RGIVPDTITYSSMI 553
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 100/251 (39%), Gaps = 25/251 (9%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + L D YN +++ A +LQ++ G P T +++ + G
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNG 479
Query: 107 KYNLVYEFFRKVQKS------------YIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
K E F+ +QKS P+ Y +L++ L EGK EA E+M
Sbjct: 480 KLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH 539
Query: 155 RGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQN 214
RGIV Y + LC + +EA D + + P VV++T LI +G + +
Sbjct: 540 RGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDD 599
Query: 215 AAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV 273
+F +M + N +T ++ + + G A+ +FQEM V
Sbjct: 600 GLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSG------------V 647
Query: 274 IPDIYTFNTML 284
PD T ML
Sbjct: 648 YPDTITIRNML 658
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 109/257 (42%), Gaps = 29/257 (11%)
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P+ + + L+ + R + D +S + MER+ I + L +C CS K AL
Sbjct: 76 LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALS 135
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
KI K+ P VV++T L+ + A F+QM + C PN+VT ++
Sbjct: 136 TFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLC 195
Query: 242 EHGLFEEAMKLFQEMAED------------------------SNHINREYDKKGLVIPDI 277
G EA+ L M ED + ++ R+ ++ +IP++
Sbjct: 196 REGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNV 255
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEI 333
++ ++D+ + R D + ++ M G+ + + MI+ +G+ +LL+
Sbjct: 256 VIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQE 315
Query: 334 TWEHLARADRITPPALI 350
E D +T ALI
Sbjct: 316 MLERKISPDVVTYNALI 332
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 77/166 (46%), Gaps = 9/166 (5%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDP--RLEPDIVVYNA 62
PD V ++ L G +K+ ++ M+ K L+ P +EPD+ YN
Sbjct: 463 PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKD------LDASHPFNGVEPDVQTYNI 516
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKS 121
+++ + ++ A + +++ +G P TY +++ + + + + F + KS
Sbjct: 517 LISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKS 576
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ PN + + L+N + G+ D+ + +M RRGIV +A Y L
Sbjct: 577 FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITL 622
>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
Length = 591
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 118/258 (45%), Gaps = 17/258 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y I G G + ++ DSM + +EPDI+ YN ++
Sbjct: 316 PDVITYNMIIDGYGLRGQVDRAREIFDSM---------------INKSIEPDIISYNILI 360
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N R+K+ + A V +++ Q+G KPS T +++ + G+ FF + + +I
Sbjct: 361 NGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHI 420
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + L+ ++ G +EA+S +ERR + +Y + LC GK ++A
Sbjct: 421 PDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHAT 480
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+K+ + P V++YT +I G + A + +M+ N C + T N++V+ +L
Sbjct: 481 FEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLR 540
Query: 243 HGLFEEAMKLFQEMAEDS 260
E +E+A S
Sbjct: 541 SNKVSEMKAFLEEIAGKS 558
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 125/292 (42%), Gaps = 17/292 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP+ V+Y V+N ++ + AF +L+ ++Q KP+ TY +V++ G +
Sbjct: 175 EPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATS 234
Query: 114 FFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++ QKS P+ Y L++ L + + + + +M I + + + LC
Sbjct: 235 LLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLC 294
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLV 231
GK E+A M + + P V++Y +I G + A IF+ M N P+++
Sbjct: 295 KEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDII 354
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
+ NI++ Y +EAM+ + RE +KGL P I T N +L
Sbjct: 355 SYNILINGYARQKKIDEAMQ-----------VCREISQKGLK-PSIVTCNVLLHGLFELG 402
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADR 343
R + + ML G + H ++ + G L+E H + +R
Sbjct: 403 RTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNG---LVEEAMSHFHKLER 451
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 122/262 (46%), Gaps = 15/262 (5%)
Query: 71 KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP-NALAY 129
K + AF + +Q+ + PS ++ +++ M+ Y+ V FR++ K IP +
Sbjct: 51 KCLDDAFSLFRQMVRTKPLPSVASFSKLLKAMVHMKHYSSVVSLFREIHKLRIPVHEFIL 110
Query: 130 KVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK 189
++VN+ +TD S + ++GI + + L R L + K ++A+ K+ +
Sbjct: 111 SIVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVR 170
Query: 190 V-ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEHGLFE 247
+P V Y ++ G+ Q A + M+ + PN T I++ A+ + G+ +
Sbjct: 171 ENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLD 230
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
A L EM + S + PDI+T++T++DA +W+++ ++ M+H
Sbjct: 231 GATSLLNEMKQKS------------IPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLN 278
Query: 308 LHFNAKRHLRMILDASRAGKVE 329
++ N +I + GKVE
Sbjct: 279 IYPNVCTFNSVIDGLCKEGKVE 300
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/380 (21%), Positives = 156/380 (41%), Gaps = 45/380 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKK------------FKTGTL------ 46
P+ V Y ++ L + GH ++ FD++ M K K G L
Sbjct: 176 PNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSL 235
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E + PDI Y+ +++A + QWE + ++ P+ T+ V++ +
Sbjct: 236 LNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCK 295
Query: 105 CGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK E R ++K P+ + Y ++++ G+ D A + M + I
Sbjct: 296 EGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIIS 355
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L K +EA+ +I + KP +V+ L+ + G ++A F++M
Sbjct: 356 YNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEML 415
Query: 224 NFCS-PNLVTCNIMVKAYLEHGLFEEAMKLFQEMA---EDSN------------------ 261
+ P+L T ++ Y ++GL EEAM F ++ ED+N
Sbjct: 416 SAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLD 475
Query: 262 HINREYDKKGLV--IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
+ ++K L+ PD+ T+ M+ E D+ + + ++M +G + + + ++
Sbjct: 476 KAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIV 535
Query: 320 LDASRAGKVELLEITWEHLA 339
R+ KV ++ E +A
Sbjct: 536 RGFLRSNKVSEMKAFLEEIA 555
>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 819
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/354 (22%), Positives = 148/354 (41%), Gaps = 43/354 (12%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D +Y S+ +G +E +V M + +P ++ YN +LN
Sbjct: 207 DVYSYTSLISAFANSGRYREAVNVFKKME---------------EEGCKPTLITYNVILN 251
Query: 66 ACVRRKQ-WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YI 123
+ W +++++K G P A TY ++ + + F +++ + +
Sbjct: 252 VFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFS 311
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y L++ + + EA+ + +ME G S Y L G +EA+
Sbjct: 312 HDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMEL 371
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+++ + KP V +YT L+ +G +++A IF +M+N C PN+ T N +K Y
Sbjct: 372 KNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGN 431
Query: 243 HGLFEEAMKLFQE------------------------MAEDSNHINREYDKKGLVIPDIY 278
G F + MK+F E M + + + +E + G V P+
Sbjct: 432 RGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV-PERE 490
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLE 332
TFNT++ A + ++ VY+RML G+ + + ++ +R G E E
Sbjct: 491 TFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSE 544
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/375 (22%), Positives = 155/375 (41%), Gaps = 75/375 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKK-FKT--------GTLER---- 48
PD V + ++ GQ G E+ V M+ +P+++ F T G+ E+
Sbjct: 452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTV 511
Query: 49 ----WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG-------- 96
D + PD+ YN VL A R WE + VL +++ KP+ TY
Sbjct: 512 YRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYAN 571
Query: 97 ------------------------LVMEVMLACGKYNLVYE----FFRKVQKSYIPNALA 128
L+ ++L C K +L+ E F ++ + P+
Sbjct: 572 GKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITT 631
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA---GKCEEALMQMD 185
+V+ R +A ++ M+ RG S A Y L + GK EE L +
Sbjct: 632 LNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILRE-- 689
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHG 244
I KP ++SY +I A + +++A+ IF++M++ P+++T N + +Y
Sbjct: 690 -ILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADS 748
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
+FEEA+ + + M + H R P+ T+N+++D R D+ +L + +
Sbjct: 749 MFEEAIGVVRYMIK---HGCR---------PNQNTYNSIVDGYCKLNRKDEAKLFVEDLR 796
Query: 305 HHGLHFNAKRHLRMI 319
+ H LR++
Sbjct: 797 NLDPHAPKGEDLRLL 811
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/365 (18%), Positives = 132/365 (36%), Gaps = 77/365 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y ++ +AG ++ ++ + MR+ K P+I +NA +
Sbjct: 382 PDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCK---------------PNICTFNAFI 426
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YI 123
R ++ + ++ G P T+ ++ V G + V F++++++ ++
Sbjct: 427 KMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV 486
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + L++ R G ++A++ M G+ + Y + L G E++
Sbjct: 487 PERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKV 546
Query: 184 MDKICKVANKPLVVSYTGLIQACLD---------------SGNIQNAAYIFNQMKNFC-- 226
+ ++ KP ++Y L+ A + SG I+ A + + C
Sbjct: 547 LAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSK 606
Query: 227 -------------------SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE--------- 258
SP++ T N MV Y + +A ++ M E
Sbjct: 607 CDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMAT 666
Query: 259 ---------------DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
S I RE KG + PDI ++NT++ A R D ++ M
Sbjct: 667 YNSLMYMHSRSADFGKSEEILREILAKG-IKPDIISYNTVIYAYCRNTRMRDASRIFSEM 725
Query: 304 LHHGL 308
G+
Sbjct: 726 RDSGI 730
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/236 (20%), Positives = 98/236 (41%), Gaps = 25/236 (10%)
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
++++ L +EG+ A + ++ G Y L ++G+ EA+ K+ +
Sbjct: 178 IVISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEE 237
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEE 248
KP +++Y ++ G N + +MK + +P+ T N ++ L +E
Sbjct: 238 GCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297
Query: 249 AMKLFQEM-AEDSNHINREYD------------KKGLVI----------PDIYTFNTMLD 285
A ++F+EM A +H Y+ K+ + + P I T+N+++
Sbjct: 298 AAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLIS 357
Query: 286 ACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
A A + D+ + +M G + + ++ RAGKVE +E + A
Sbjct: 358 AYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNA 413
>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 819
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/359 (23%), Positives = 149/359 (41%), Gaps = 53/359 (14%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D +Y S+ +G +E +V M + +P ++ YN +LN
Sbjct: 207 DVYSYTSLISAFANSGRYREAVNVFKKME---------------EDGCKPTLITYNVILN 251
Query: 66 ACVRRKQ-WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL------VYEFFRKV 118
+ W +++++K G P A TY ++ C + +L V+E +
Sbjct: 252 VFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLIT---CCKRGSLHQEAAQVFEEMKAA 308
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
SY + + Y L++ + + EA+ + +M G S Y L G +
Sbjct: 309 GFSY--DKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLD 366
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
EA+ +++ + KP V +YT L+ +G +++A IF +M+N C PN+ T N +
Sbjct: 367 EAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFI 426
Query: 238 KAYLEHGLFEEAMKLFQE------------------------MAEDSNHINREYDKKGLV 273
K Y G F E MK+F E M + + + +E + G V
Sbjct: 427 KMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV 486
Query: 274 IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLE 332
P+ TFNT++ A + ++ VY+RML G+ + + ++ +R G E E
Sbjct: 487 -PERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSE 544
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 87/375 (23%), Positives = 155/375 (41%), Gaps = 75/375 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKK-FKT--------GTLER---- 48
PD V + ++ GQ G E+ V M+ +P+++ F T G+ E+
Sbjct: 452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTV 511
Query: 49 ----WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG-------- 96
D + PD+ YN VL A R WE + VL +++ KP+ TY
Sbjct: 512 YRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYAN 571
Query: 97 ------------------------LVMEVMLACGKYNLVYE----FFRKVQKSYIPNALA 128
L+ ++L C K +L+ E F ++ + P+
Sbjct: 572 GKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITT 631
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA---GKCEEALMQMD 185
+V+ R +A ++ M+ RG S A Y L + GK EE L +
Sbjct: 632 LNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILRE-- 689
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHG 244
I KP ++SY +I A + +++A+ IF++M+N P+++T N + +Y
Sbjct: 690 -ILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADS 748
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
+FEEA+ + + M + H R P+ T+N+++D R D+ +L + +
Sbjct: 749 MFEEAIGVVRYMIK---HGCR---------PNQNTYNSIVDGYCKLNRKDEAKLFVEDLR 796
Query: 305 HHGLHFNAKRHLRMI 319
+ H LR++
Sbjct: 797 NLDPHAPKGEDLRLL 811
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/353 (20%), Positives = 134/353 (37%), Gaps = 53/353 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLP-----------------KKKFKTGTLE 47
PD Y ++ +AG ++ + + MR+ + KF T ++
Sbjct: 382 PDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKF-TEMMK 440
Query: 48 RWDP----RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
+D L PDIV +N +L + V +++K+ G P T+ ++
Sbjct: 441 IFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYS 500
Query: 104 ACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
CG + +R++ + + P+ Y ++ L R G +++ + +ME +
Sbjct: 501 RCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNEL 560
Query: 163 LYYDLARCLCSAGKCEEALMQ--MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y L + GK E LM +++ +P V L+ C + A F+
Sbjct: 561 TYCSLLHAYAN-GK-EIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFS 618
Query: 221 QMKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE--------------------- 258
++K SP++ T N MV Y + +A + M E
Sbjct: 619 ELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSA 678
Query: 259 ---DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
S I RE KG + PDI ++NT++ A R D ++ M + G+
Sbjct: 679 DFGKSEEILREILAKG-IKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGI 730
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 70/324 (21%), Positives = 132/324 (40%), Gaps = 28/324 (8%)
Query: 33 MRSLPKKKFKTGTL-----ERWDP-RLEPDIVVYN--AVLNACVRRKQWEGAF----WVL 80
+RSL + F +G L E ++P + +P+ A L K+++ A W +
Sbjct: 103 LRSLIEPNFDSGQLDSVLSELFEPFKDKPESTSSELLAFLKGLGFHKKFDLALRAFDWFM 162
Query: 81 QQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWRE 139
+Q Q ++ +++ ++ G+ + F +Q+ + + +Y L++
Sbjct: 163 KQKDYQSMLDNSVV-AIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANS 221
Query: 140 GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM-DKICKVANKPLVVS 198
G+ EAV+ + ME G + Y + G + + +K+ P +
Sbjct: 222 GRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYT 281
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y LI C Q AA +F +MK S + VT N ++ Y + +EAMK+ EM
Sbjct: 282 YNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMV 341
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
+ P I T+N+++ A A + D+ + +M G + +
Sbjct: 342 LNG------------FSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTT 389
Query: 318 MILDASRAGKVELLEITWEHLARA 341
++ RAGKVE +E + A
Sbjct: 390 LLSGFERAGKVESAMSIFEEMRNA 413
>gi|357503117|ref|XP_003621847.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496862|gb|AES78065.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 457
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/338 (20%), Positives = 148/338 (43%), Gaps = 32/338 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ + I +++++ M+ + + PD+V YN++
Sbjct: 40 PDIITYNTLIDGYCRFVGIDAAYNILNRMK---------------EAGINPDVVSYNSLS 84
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV--QKSY 122
+ VR+ + + + ++ Q G +P +Y ++M GK FR + +
Sbjct: 85 SGAVRKCLLQKSLDLFDEMLQSGIRPDVWSYNILMHCYFRLGKPEEANGVFRDIFERGEI 144
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ +Y V++N L + G + A+ ++ RRG V Y + LC A + +A
Sbjct: 145 YPSMASYNVMINGLCKNGYVNNALMLFRNLRRRGFVPEVLTYNAMINGLCKARRLADARR 204
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAY 240
+++ C +P ++YT +++ C G ++ I ++M K F C + V A
Sbjct: 205 VLNEFCDFGFEPNAITYTTVMKCCFRCGRLEQGLEILSEMRRKGFTFDGFAYCTV-VAAL 263
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
++ G EEA ++ ++M + ++PD+ ++NTM++ + R+D+ +
Sbjct: 264 VKTGRIEEADEIAEKMMSNG------------LVPDLASYNTMINLFCRQGRFDEALRLV 311
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
+ G+ + H +I + G E E +++
Sbjct: 312 DEIEKQGMKCDQYTHTIIIHGLCKDGNFEGAEKHLDYM 349
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 127/291 (43%), Gaps = 34/291 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YP +Y + L + G++ + + R+L ++ F P+++ YNA+
Sbjct: 145 YPSMASYNVMINGLCKNGYVN---NALMLFRNLRRRGFV------------PEVLTYNAM 189
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSY 122
+N + ++ A VL + G +P+A TY VM+ CG+ E +++ K +
Sbjct: 190 INGLCKARRLADARRVLNEFCDFGFEPNAITYTTVMKCCFRCGRLEQGLEILSEMRRKGF 249
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+ AY +V L + G+ +EA E M G+V A Y + C G+ +EAL
Sbjct: 250 TFDGFAYCTVVAALVKTGRIEEADEIAEKMMSNGLVPDLASYNTMINLFCRQGRFDEALR 309
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYL 241
+D+I K K ++T +I GN + A + M NLV N ++
Sbjct: 310 LVDEIEKQGMKCDQYTHTIIIHGLCKDGNFEGAEKHLDYMNTLGFGFNLVAFNSILDCLG 369
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML-DACAAEK 291
+ G ++A+K+F M + D +T+ ++L + C A+K
Sbjct: 370 KAGDIDKAVKVFDSME----------------VKDSFTYTSLLHNLCRAKK 404
>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Vitis vinifera]
Length = 728
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/362 (24%), Positives = 158/362 (43%), Gaps = 32/362 (8%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD V Y + L + G D+++ M +E+ + EP V YN +
Sbjct: 316 HPDVVTYTGLIDGLCKDGRATHAMDLLNLM------------VEKGE---EPSNVTYNVL 360
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV---QK 120
L+ + AF +L+ + ++G+K TY +M+ + GK + + F + +
Sbjct: 361 LSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNEN 420
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
PN + +L+ L +EG+ +AV M ++G G+ Y L AGK +EA
Sbjct: 421 CLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEA 480
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
+ ++ + P +Y+ LI + A +F +M+ +P L N ++ +
Sbjct: 481 MELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMAS 540
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ G E+A LFQEM + N E PDI +FNTM+D + ++ +
Sbjct: 541 LCKEGSLEQAKSLFQEMG----NANCE--------PDIISFNTMIDGTLKAGDFQFVKEL 588
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLE 359
+M+ GL +A +I S+ G+++ + E + A TP AL+ + L
Sbjct: 589 QMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMV-ASGFTPDALVYDSLLKGLS 647
Query: 360 NK 361
+K
Sbjct: 648 SK 649
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 136/319 (42%), Gaps = 27/319 (8%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + PDIV YN ++N + K+ + A +L +++ G P++ T +M+ + G
Sbjct: 169 EMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDG 228
Query: 107 KYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ + E + +K + + + Y L++ G D ++M +GI + Y
Sbjct: 229 RMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYS 288
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KN 224
L LC G+ +EA ++ + + P VV+YTGLI G +A + N M +
Sbjct: 289 CLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEK 348
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNH---------------------- 262
P+ VT N+++ + GL +A K+ + M E
Sbjct: 349 GEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEA 408
Query: 263 ---INREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
N +D + + P+++TFN ++ E R ++++M+ G N + ++
Sbjct: 409 LKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLL 468
Query: 320 LDASRAGKVELLEITWEHL 338
+AGK++ W+ +
Sbjct: 469 GGCLKAGKIKEAMELWKQV 487
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/309 (20%), Positives = 134/309 (43%), Gaps = 31/309 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P++V ++ L + G + E +++++M+ KK F + D+V+Y +
Sbjct: 211 FPNSVTCTTLMDGLCKDGRMDEAMELLEAMK---KKGF------------DADVVLYGTL 255
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
++ + + ++ +G + TY ++ + G++ + + I
Sbjct: 256 ISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGI 315
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ + Y L++ L ++G+ A+ + M +G S Y L LC G +A
Sbjct: 316 HPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFK 375
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM---KNFCSPNLVTCNIMVKA 239
+ + + K VV+Y L++ D G + A +FN M +N PN+ T N+++
Sbjct: 376 ILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGG 435
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ G +A+K I+R+ KKG ++ T+N +L C + + +
Sbjct: 436 LCKEGRLTKAVK-----------IHRKMVKKG-SCGNLVTYNMLLGGCLKAGKIKEAMEL 483
Query: 300 YKRMLHHGL 308
+K++L G
Sbjct: 484 WKQVLDLGF 492
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/348 (21%), Positives = 131/348 (37%), Gaps = 72/348 (20%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D L P N +++A R + + AF V +++ PS + ++E K
Sbjct: 67 DFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQ 126
Query: 110 LVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
L + V ++ + N +++ L R G EA+ + +M R+ + Y L
Sbjct: 127 LGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLI 186
Query: 169 RCLCSAGKCEEAL-------------------MQMDKICK-------------VANKPL- 195
LC A K +EA+ MD +CK + K
Sbjct: 187 NGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFD 246
Query: 196 --VVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKL 252
VV Y LI ++GN+ +F++M S N+VT + +V G ++EA +
Sbjct: 247 ADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTV 306
Query: 253 FQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR----WDDLELVYKR------ 302
MAE H PD+ T+ ++D + R D L L+ ++
Sbjct: 307 LNAMAEHGIH------------PDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSN 354
Query: 303 ---------MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
+ GL +A + LRM+++ + V +T+ L +
Sbjct: 355 VTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADV----VTYNTLMKG 398
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P + YN ++ + + E A + Q++ +P ++ +++ L G + V
Sbjct: 527 LNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVK 586
Query: 113 EF-FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E + V+ P+AL + L+N L + G+ DEA SA+E M G A +Y L + L
Sbjct: 587 ELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGL 646
Query: 172 CSAGKCEEAL 181
S G E +
Sbjct: 647 SSKGDTTEII 656
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 5/154 (3%)
Query: 26 LFDVIDSMRSLPKK----KFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQ 81
LFD M SL K+ + K+ E + EPDI+ +N +++ ++ ++ +
Sbjct: 531 LFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQM 590
Query: 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREG 140
++ + G +P A T+ ++ + G+ + R V + P+AL Y L+ L +G
Sbjct: 591 KMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKG 650
Query: 141 KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
T E ++ + M +G V + + CLC +
Sbjct: 651 DTTEIINLLHQMAAKGTVLDRKIVSTILTCLCHS 684
>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
Length = 573
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/374 (24%), Positives = 162/374 (43%), Gaps = 40/374 (10%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P V + I +A +K+ + MR + P+ Y
Sbjct: 1 MECQPTVVTWTIIIDGFCKANQLKQALACFEKMREF----------------VAPNERTY 44
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQ-QGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV- 118
N V+N + + A+ VL++++ + P TY V+ G+ + E R++
Sbjct: 45 NVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMV 104
Query: 119 -QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+ P+ + Y +V+ L R+GK D A V +M+ +G+ + L C+A K
Sbjct: 105 TRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKV 164
Query: 178 EEALMQMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNI 235
+EAL +I ++ KP VV+YT LI SGN++ A + M+ C PN+VT +
Sbjct: 165 DEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSS 224
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
++ + G ++A+ LF+ M KG V P++ T+ T++ A + D
Sbjct: 225 LLHGLCKAGDLDQALDLFRRMT-----------SKGCV-PNVVTYTTLIHGLCAAHKVDA 272
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA----DRITPPALIK 351
L+ M + + ++ R G++E + ++ +A DRIT L++
Sbjct: 273 ARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVR 332
Query: 352 ERFCN--RLENKDY 363
FCN RLE +
Sbjct: 333 G-FCNASRLEEARF 345
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/353 (22%), Positives = 155/353 (43%), Gaps = 33/353 (9%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S PD V Y ++ + G + +++ M + + G + PD+V Y
Sbjct: 72 SVAPDLVTYSTVINGFCKQGEMDRACEILREMVT------RDG--------IAPDVVTYT 117
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV--Q 119
+V++ R + + A +++++K +G +P T+ ++ K + + ++++
Sbjct: 118 SVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTS 177
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
S+ P+ + Y L++ + G ++A+ + ME R V + Y L LC AG ++
Sbjct: 178 SSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQ 237
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVK 238
AL ++ P VV+YT LI + + A + ++M C P+ V+ N ++
Sbjct: 238 ALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLD 297
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
Y G EEA +LF+EMA S +PD T+ ++ R ++
Sbjct: 298 GYCRLGRIEEAKQLFKEMATKS------------CLPDRITYTCLVRGFCNASRLEEARF 345
Query: 299 VYKRM-LHHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLARADRITPPAL 349
+ + M G+ + + ++ SRA + VE E E +AR + P A+
Sbjct: 346 LLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIAR--NVAPNAV 396
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 136/328 (41%), Gaps = 29/328 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ L + G + +++ M K K +EPD ++A++
Sbjct: 111 PDVVTYTSVVDGLCRDGKMDRACEMVREM------KLKG---------VEPDKFTFSALI 155
Query: 65 NA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSY 122
C RK E + L KP TY +++ G + ++ +
Sbjct: 156 TGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKC 215
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+PN + Y L++ L + G D+A+ M +G V + Y L LC+A K + A +
Sbjct: 216 VPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARL 275
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYL 241
MD++ P VSY L+ G I+ A +F +M C P+ +T +V+ +
Sbjct: 276 LMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFC 335
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
EEA L + M + + PD+ T++ ++ + KR+ + +
Sbjct: 336 NASRLEEARFLLENMKTAAG-----------IDPDVVTYSIVVAGYSRAKRFVEAAEFIQ 384
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVE 329
M+ + NA + +I +AG+V+
Sbjct: 385 EMIARNVAPNAVTYSSLIDGLCKAGRVD 412
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 17/221 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV+Y ++ + G I+E K+ FK E PD + Y ++
Sbjct: 287 PDTVSYNALLDGYCRLGRIEE-----------AKQLFK----EMATKSCLPDRITYTCLV 331
Query: 65 NACVRRKQWEGAFWVLQQLKQQ-GQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSY 122
+ E A ++L+ +K G P TY +V+ ++ EF ++ + ++
Sbjct: 332 RGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNV 391
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PNA+ Y L++ L + G+ D A+ +++M + + S + + LC G +EA
Sbjct: 392 APNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWK 451
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ + +P +V+YT L++ +G ++ A +F M+
Sbjct: 452 LLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMR 492
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 110/277 (39%), Gaps = 27/277 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKKFKTGTL--------------- 46
P+ V Y S+ L +AG + + D+ M S +P T +
Sbjct: 217 PNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLL 276
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E PD V YNA+L+ R + E A + +++ + P TY ++
Sbjct: 277 MDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGF-- 334
Query: 105 CGKYNLVYEFF----RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
C L F K P+ + Y ++V R + EA +++M R + +
Sbjct: 335 CNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPN 394
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
A Y L LC AG+ + A+ + + +P V ++ +I A G++ A +
Sbjct: 395 AVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLV 454
Query: 221 QMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
M + P +VT +++ + G E A +LF+ M
Sbjct: 455 AMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVM 491
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 86/196 (43%), Gaps = 25/196 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y S+ L +AG + +V+ +M + R+EP + +N+V+
Sbjct: 393 PNAVTYSSLIDGLCKAGRVDHAMEVLKNM---------------VNKRVEPSVGTFNSVI 437
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK---- 120
A R + A+ +L + G +P TY ++E G+ + YE F ++K
Sbjct: 438 GALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKK 497
Query: 121 -----SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
+ +P A+ L+ L + + D+A++ VE++ R + + L AG
Sbjct: 498 SSSAANLVPEQ-AFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAG 556
Query: 176 KCEEALMQMDKICKVA 191
+ EEA ++ I KV
Sbjct: 557 RTEEAGKLINSISKVG 572
>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
Length = 529
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 129/277 (46%), Gaps = 14/277 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ V YN +++ + + GA V ++++QG +P+ TY +++ + + GK +
Sbjct: 226 PNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVAL 285
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ S + PN + + VL+N + +EA++ DME++G+ +A Y L C
Sbjct: 286 RDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCK 345
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+ E+A + + P V +Y LI G+++ A + N+M S ++VT
Sbjct: 346 DGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVT 405
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
NI++ + + G +A+KL EM E KGL P T+NT++D E
Sbjct: 406 YNILIDSLCKKGESRKAVKLLDEMFE-----------KGLN-PSHVTYNTLMDGYCREGN 453
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+V RM G N H +I G++E
Sbjct: 454 LRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLE 490
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 111/243 (45%), Gaps = 17/243 (6%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E ++E +++ +N V+N + + A V++ +K G P+ TY +++ G
Sbjct: 145 EMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMG 204
Query: 107 KYNLVYE----FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+ +Y+ V K PN + Y +L++ ++ A+ +M+R+G+ +
Sbjct: 205 RIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVV 264
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y L LCS GK +EA+ D++ +P VV++ LI + + A +FN M
Sbjct: 265 TYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDM 324
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
K PN +T ++ AY + G E+A L+ M + + P++ T+N
Sbjct: 325 EKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRG------------IFPEVSTYN 372
Query: 282 TML 284
++
Sbjct: 373 CLI 375
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 119/283 (42%), Gaps = 26/283 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y + L G + E + D M S LEP++V +N ++
Sbjct: 261 PNVVTYNILINGLCSDGKVDEAVALRDQMVS---------------SDLEPNVVTHNVLI 305
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + K A + +++QG P+A TY +++ G+ + + + +
Sbjct: 306 NGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIF 365
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P Y L+ L R+G A S + +M + + Y L LC G+ +A+
Sbjct: 366 PEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKL 425
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+D++ + P V+Y L+ GN++ A + +M + N+VT N+++K +
Sbjct: 426 LDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCL 485
Query: 243 HGLFEEAMKLFQEMAEDSNHINR--------EYDKKGLVIPDI 277
G E+A L EM E NR E +KG V PDI
Sbjct: 486 KGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEKGFV-PDI 527
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 72/164 (43%), Gaps = 20/164 (12%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ Y + L + G +K +++ M S +L D+V YN +
Sbjct: 365 FPEVSTYNCLIAGLCRKGDVKAARSLMNEMVS---------------KKLSADVVTYNIL 409
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF---RKVQK 120
+++ ++ + A +L ++ ++G PS TY +M+ C + NL R +K
Sbjct: 410 IDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGY--CREGNLRAALIVRTRMERK 467
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
N + + VL+ +G+ ++A + +M RG+V + Y
Sbjct: 468 GKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTY 511
>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
[Vitis vinifera]
gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
Length = 878
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 132/308 (42%), Gaps = 31/308 (10%)
Query: 51 PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
P P + +YN VL + +R + + W+ + + G P T L++ + G++
Sbjct: 110 PANPPPVYLYNMVLESSLREDKVDSFSWLYKDMVVAGVSPETYTLNLLIAGLCDSGRFED 169
Query: 111 VYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
E F K+ K PN ++ +LV R G + A+ ++ M G+ + +Y L
Sbjct: 170 AREVFDKMGVKGCRPNEFSFGILVRGYCRAGLSMRALELLDGMGSFGVQPNKVIYNTLIS 229
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-----N 224
C G+ EEA ++++ + P VV++ I A +G I A+ IF M+
Sbjct: 230 SFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKILEASRIFRDMQIDEELG 289
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN-------------------- 264
PN+ T N+M++ + + G+ EEA L + M + N +
Sbjct: 290 LPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVRNGKLLEA 349
Query: 265 ----REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMIL 320
+E KG + P+IY+FNT++D D ++ M+ G+ + + ++
Sbjct: 350 QLALKEMVDKG-IEPNIYSFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVTYSTLLH 408
Query: 321 DASRAGKV 328
GKV
Sbjct: 409 GCCSTGKV 416
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/364 (22%), Positives = 144/364 (39%), Gaps = 73/364 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTLERWDPR---------- 52
P+T + L +G ++ +V D M + +F G L R R
Sbjct: 149 PETYTLNLLIAGLCDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCRAGLSMRALEL 208
Query: 53 --------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
++P+ V+YN ++++ R + E A +++++++ G P T+ + + +
Sbjct: 209 LDGMGSFGVQPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCS 268
Query: 105 CGKYNLVYEFFRKVQKSY-----IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG--- 156
GK FR +Q PN + +++ +EG +EA + VE M+R G
Sbjct: 269 AGKILEASRIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLM 328
Query: 157 -----------IVGSAAL---------------------YYDLARCLCSAGKCEEALMQM 184
+V + L + + LC G +A M M
Sbjct: 329 ELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIM 388
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLEH 243
+ P V+Y+ L+ C +G + A I ++ M+ CSPN TCNI++ + +
Sbjct: 389 GLMISSGIGPDTVTYSTLLHGCCSTGKVLKANNILHEMMRRGCSPNTYTCNILLHSLWKE 448
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G EA KL Q+M E R YD D T N ++D + D+ + + M
Sbjct: 449 GRIFEAEKLLQKMNE------RSYD------LDNVTCNIVIDGLCKSGKLDEAVEIVEGM 496
Query: 304 LHHG 307
HG
Sbjct: 497 WIHG 500
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/323 (19%), Positives = 128/323 (39%), Gaps = 61/323 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y I L +AG + E +KKF +E L PD ++Y+ +
Sbjct: 526 PDLITYSIIINGLCKAGRLDE-----------ARKKF----IEMVGKSLHPDSIIYDTFI 570
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
++ + + AF VL+ ++++G S TY ++L G N ++E +
Sbjct: 571 HSFCKHGKISSAFRVLKDMEKRGCNKSLQTYN---SLILGLGSKNQIFEIY--------- 618
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
++DM+ +GI + Y ++ CLC G+ ++A +
Sbjct: 619 ----------------------GLLDDMKEKGITPNICTYNNMISCLCEGGRIKDATSLL 656
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHG 244
D++ + P + S+ LI+A + + +F + C ++M L G
Sbjct: 657 DEMLQKGISPNISSFRLLIKAFCKASDFGVVKEVFEIALSICGHKEALYSLMFNELLIGG 716
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
EA +LF ++R +D + +N +++ ++ ++ + +M+
Sbjct: 717 EVSEAKELFDAA------LDRCFDLGN------FQYNDLIEKLCKDEMLENASDILHKMI 764
Query: 305 HHGLHFNAKRHLRMILDASRAGK 327
G F+ + +I + GK
Sbjct: 765 DKGYRFDPASFMPVIDGLGKRGK 787
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 14/182 (7%)
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++ FR + P Y +++ + RE K D +DM G+ L L
Sbjct: 102 FQSFRSQVPANPPPVYLYNMVLESSLREDKVDSFSWLYKDMVVAGVSPETYTLNLLIAGL 161
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C +G+ E+A DK+ +P S+ L++ +G A + + M +F PN
Sbjct: 162 CDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCRAGLSMRALELLDGMGSFGVQPNK 221
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAA 289
V N ++ ++ G EEA +L + M ED + PD+ TFN+ + A C+A
Sbjct: 222 VIYNTLISSFCREGRNEEAERLVERMREDG------------LFPDVVTFNSRISALCSA 269
Query: 290 EK 291
K
Sbjct: 270 GK 271
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 71/172 (41%), Gaps = 14/172 (8%)
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K +P+ + Y +++N L + G+ DEA +M + + + +Y C GK
Sbjct: 522 KKCLPDLITYSIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTFIHSFCKHGKISS 581
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVK 238
A + + K + +Y LI I + + MK +PN+ T N M+
Sbjct: 582 AFRVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMIS 641
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAA 289
E G ++A L EM + KG + P+I +F ++ A C A
Sbjct: 642 CLCEGGRIKDATSLLDEMLQ-----------KG-ISPNISSFRLLIKAFCKA 681
>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 143/330 (43%), Gaps = 30/330 (9%)
Query: 5 PDTVAYRSIAVTLGQAG-HIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
P+ V Y ++ G+ G K + ++ + M + G ++PD + YN++
Sbjct: 255 PNLVTYNAVIDACGKGGVEFKRVVEIFEEM-------LRNG--------VQPDRITYNSL 299
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSY 122
L C R WE A + ++ +G TY +++ + G+ +L YE ++ K
Sbjct: 300 LAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKI 359
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+PN + Y + + + G+ ++A++ +M+ GI Y L G+ E+AL
Sbjct: 360 LPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALK 419
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
++ K VV+Y L+ G +F +M K+ PNL+T + ++ Y
Sbjct: 420 VCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYS 479
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ L+EEAM++F RE+ + GL D+ ++ +++A D L+
Sbjct: 480 KGSLYEEAMEVF-----------REFKQAGLK-ADVVLYSELINALCKNGLVDSAVLLLD 527
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELL 331
M G+ N + +I R+ E L
Sbjct: 528 EMTKEGIRPNVVTYNSIIDAFGRSTTAEFL 557
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 137/295 (46%), Gaps = 38/295 (12%)
Query: 16 TLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEG 75
TLG+ G ++ L K F+T E + + ++A+++A + ++
Sbjct: 196 TLGRLGKVE-----------LAKGVFETALSEGYGN----TVFAFSALISAYGKSGYFDE 240
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGK----YNLVYEFFRKVQKSYI-PNALAYK 130
A V + +K G KP+ TY V++ ACGK + V E F ++ ++ + P+ + Y
Sbjct: 241 AIKVFESMKVSGLKPNLVTYNAVID---ACGKGGVEFKRVVEIFEEMLRNGVQPDRITYN 297
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
L+ R G + A + +M RGI Y L +C G+ + A M ++
Sbjct: 298 SLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGK 357
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNL--VTCNIMVKAYLEHGLFEE 248
P VV+Y+ + +G +++A ++N+MK F L V+ N ++ Y + G FE+
Sbjct: 358 KILPNVVTYSTMADGYAKAGRLEDALNLYNEMK-FLGIGLDRVSYNTLLSIYAKLGRFED 416
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
A+K+ +EM V D+ T+N +LD + +++++ V+K M
Sbjct: 417 ALKVCKEMGSSG------------VKKDVVTYNALLDGYGKQGKFNEVTRVFKEM 459
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 23/204 (11%)
Query: 103 LACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+ C + LV E RK ++ + +A+ ++TL R GK + A E G +
Sbjct: 170 IRCFDFALVREG-RKNERGKLASAM-----ISTLGRLGKVELAKGVFETALSEGYGNTVF 223
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG-NIQNAAYIFNQ 221
+ L +G +EA+ + + KP +V+Y +I AC G + IF +
Sbjct: 224 AFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEE 283
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
M +N P+ +T N ++ GL+E A LF EM I+R D+ D++T+
Sbjct: 284 MLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEM------IDRGIDQ------DVFTY 331
Query: 281 NTMLDACAAEKRWDDLELVYKRML 304
NT+LDA + ++L Y+ ML
Sbjct: 332 NTLLDAVC---KGGQMDLAYEIML 352
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 21 GHIKELFDVIDSMRSLPKKKFKTGTLE----------RWDPRLEPDIVVYNAVLNACVRR 70
GH+ + + + S + P KK + G E + ++P++V ++A+LNAC R
Sbjct: 590 GHVFKFYQQLVSEKEGPAKKERLGKEEIRSILSVFKKMHELEIKPNVVTFSAILNACSRC 649
Query: 71 KQWEGAFWVLQQLKQQGQKPSATTYGLVM---EVMLACGKYNLVYEFFRKVQKSYIPNAL 127
K E A +L++L+ + +GL+M E + +Y F +V++ A
Sbjct: 650 KSIEDASMLLEELRLFDNQVYGVAHGLLMGFSENVWIQAQY-----LFDEVKQMDSSTAS 704
Query: 128 A-YKVLVNTLWREGKTDEAVSAVEDMERRGI 157
A Y L + LW G+ A V + +RR +
Sbjct: 705 AFYNALTDMLWHFGQKRGAQLVVLEGKRRKV 735
>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 90/384 (23%), Positives = 156/384 (40%), Gaps = 45/384 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + LG+AG I E +++ M D PD+V Y ++
Sbjct: 260 PNVYTFTICIRVLGRAGKIDEAYEIFRRMD---------------DEGCGPDLVTYTVLI 304
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+A Q E A + ++K G KP Y +++ G + EF+ +++ Y+
Sbjct: 305 DALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYM 364
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + +LV+ L + DEA + + M ++GI+ + Y L L AG+ E+AL
Sbjct: 365 PDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKL 424
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ + V +P +Y I SG A F +MK PN+V CN + + E
Sbjct: 425 LGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAE 484
Query: 243 HGLFEEAMKLFQEMAEDS--------NHINREYDKKGLVI---------------PDIYT 279
G EA +F + E+ N + + Y K G V PD+
Sbjct: 485 MGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIV 544
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITW 335
N+++D+ R D+ ++ RM L + ++ + G+V EL E
Sbjct: 545 VNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMI 604
Query: 336 EHLARADRITPPALIKERFCNRLE 359
E + I+ L+ + FC E
Sbjct: 605 EKKCSPNTISFNTLL-DCFCKNDE 627
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 134/309 (43%), Gaps = 29/309 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + + G++G I ELF++ M S R +PD + YN V+
Sbjct: 821 PDAFTFNMLLAVHGKSGKITELFELYKEMIS---------------RRCKPDAITYNIVI 865
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
++ + + A L +P+ TYG +++ + G+ F ++
Sbjct: 866 SSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCK 925
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + +L+N + G T+ A + M GI Y L CLC AG+ +EAL
Sbjct: 926 PNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYY 985
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+++ P ++Y +I S ++ A ++N+M+N P+L T N ++
Sbjct: 986 FNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGL 1045
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G+ E+A ++++E+ GL PD++T+N ++ + + + VYK
Sbjct: 1046 AGMVEQAKRMYEEL-----------QLAGLE-PDVFTYNALIRGYSLSENPEHAYTVYKN 1093
Query: 303 MLHHGLHFN 311
M+ G + N
Sbjct: 1094 MMVDGCNPN 1102
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 134/305 (43%), Gaps = 18/305 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P + YN ++ + E A+ + + +K G P A T+ +++ V GK ++
Sbjct: 784 ISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELF 843
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E +++ + + P+A+ Y +++++L + D+A+ D+ + Y L L
Sbjct: 844 ELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGL 903
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
G+ EEA+ +++ KP + LI G+ + A +F +M N P+L
Sbjct: 904 AKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDL 963
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+ I+V G +EA+ F E+ K + PD +N +++
Sbjct: 964 KSYTILVDCLCLAGRVDEALYYFNEL------------KSTGLDPDFIAYNRIINGLGKS 1011
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA----DRITP 346
+R ++ +Y M + G+ + + ++L+ AG VE + +E L A D T
Sbjct: 1012 QRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTY 1071
Query: 347 PALIK 351
ALI+
Sbjct: 1072 NALIR 1076
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/363 (21%), Positives = 146/363 (40%), Gaps = 57/363 (15%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSM------------------------RSL 36
M P V Y ++ LG+ G +++ ++ +SM L
Sbjct: 571 MKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVEL 630
Query: 37 PKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG 96
K F T+ +PD++ YN V+ ++ + AFW QLK+ P T
Sbjct: 631 ALKMFSKMTVMDC----KPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKS-MHPDHVTIC 685
Query: 97 LVMEVMLACGKY--------NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSA 148
++ ++ CG+ + +Y+ +V +S+ ++ L+ E + D+A+
Sbjct: 686 TLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSF------WEDLMGGTLVEAEMDKAIIF 739
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC-KVANKPLVVSYTGLIQACL 207
E++ GI + L R LC + A DK K+ P + SY LI L
Sbjct: 740 AEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELL 799
Query: 208 DSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
+ + A +F MKN C+P+ T N+++ + + G E +L++EM I+R
Sbjct: 800 EVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEM------ISRR 853
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
PD T+N ++ + A D + ++ + + +I ++ G
Sbjct: 854 CK------PDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVG 907
Query: 327 KVE 329
++E
Sbjct: 908 RLE 910
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/265 (20%), Positives = 119/265 (44%), Gaps = 17/265 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ VA + +L + G ++E + + +R + L PD V YN ++
Sbjct: 470 PNIVACNASLYSLAEMGRLREAKTMFNGLR---------------ENGLAPDSVTYNMMM 514
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ Q + A +L ++ + G +P +++ + G+ + ++ F +++ +
Sbjct: 515 KCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLS 574
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y L++ L +EG+ +A+ E M + + + L C C + E AL
Sbjct: 575 PTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKM 634
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
K+ + KP V++Y +I + + +A + F+Q+K P+ VT ++ ++
Sbjct: 635 FSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKSMHPDHVTICTLLPGLVKC 694
Query: 244 GLFEEAMKLFQE-MAEDSNHINREY 267
G +A+ + ++ M + +NR +
Sbjct: 695 GQIGDAISIARDFMYQVRFRVNRSF 719
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 124/292 (42%), Gaps = 29/292 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D Y +I L G ++++ V++ MR K G + + YN +++
Sbjct: 156 DLDTYLTIFKALSIRGGLRQMTTVLNKMR-------KAGFV--------LNAYSYNGLIH 200
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
++ A V +++ +G KPS TY +M + +V ++++ + P
Sbjct: 201 LLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRP 260
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N + + + L R GK DEA M+ G Y L LC+AG+ E A
Sbjct: 261 NVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELF 320
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEH 243
K+ +KP V Y L+ D G++ ++QM+ + P++VT I+V +
Sbjct: 321 VKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKA 380
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
F+EA F M +K ++P+++T+NT++ R +D
Sbjct: 381 RDFDEAFATFDVM------------RKQGILPNLHTYNTLICGLLRAGRIED 420
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 132/314 (42%), Gaps = 49/314 (15%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+P + Y+A++ A +++ E +L++++ G +P+ T+ + + V+ GK + Y
Sbjct: 223 LKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAY 282
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREG-----------------KTDEAVSAV----- 149
E FR++ P+ + Y VL++ L G K D+ +
Sbjct: 283 EIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKF 342
Query: 150 -------------EDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV 196
ME G + + L LC A +EA D + K P +
Sbjct: 343 NDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNL 402
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
+Y LI L +G I++A + M++ P T NI + + + G +A++ F++
Sbjct: 403 HTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEK 462
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
M KG+V P+I N L + A R + + ++ + +GL ++ +
Sbjct: 463 MK-----------AKGIV-PNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTY 510
Query: 316 LRMILDASRAGKVE 329
M+ S+ G+V+
Sbjct: 511 NMMMKCYSKVGQVD 524
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 107/279 (38%), Gaps = 63/279 (22%)
Query: 111 VYEFFRKVQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
V+EF +QK I L Y + L G + + + M + G V +A Y L
Sbjct: 144 VFEF---MQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIH 200
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA------------------------ 205
L +G C EAL ++ KP + +Y+ L+ A
Sbjct: 201 LLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRP 260
Query: 206 -------CL----DSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253
C+ +G I A IF +M + C P+LVT +++ A G E A +LF
Sbjct: 261 NVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELF 320
Query: 254 QEMAEDSNHINR--------EYDKKGLV---------------IPDIYTFNTMLDACAAE 290
+M + + ++ +++ G + +PD+ TF ++D
Sbjct: 321 VKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKA 380
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ +D+ + M G+ N + +I RAG++E
Sbjct: 381 RDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIE 419
>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
Length = 592
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 114/245 (46%), Gaps = 20/245 (8%)
Query: 18 GQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAF 77
GQ G + +FD + D +EPDI+ Y A++N V +K+ + A
Sbjct: 332 GQMGRARRIFDSM------------------IDKGIEPDIISYTALINGYVEKKKMDKAM 373
Query: 78 WVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTL 136
+ +++ Q G KPS T +++ + G+ FF ++Q + +IPN + L+
Sbjct: 374 QLFREISQNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGY 433
Query: 137 WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV 196
++ G +EA+S +ERR + +Y + LC GK ++A +K+ + P V
Sbjct: 434 FKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDV 493
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
++YT +I G + A + +M+ N C P+ T N++V+ + E +E
Sbjct: 494 ITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLPDNRTYNVIVRGFFRSSKVSEMKAFLKE 553
Query: 256 MAEDS 260
+A S
Sbjct: 554 IAGKS 558
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/352 (22%), Positives = 154/352 (43%), Gaps = 33/352 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ L + GH ++ FD++ M K PD +YN V+
Sbjct: 176 PDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITK---------------PDTCIYNIVI 220
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+A + +GA +L ++KQ+ P TY +++ + ++ V F + + +
Sbjct: 221 DAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIY 280
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + +++ L +EGK ++A + M +G+ + Y + C G+ A
Sbjct: 281 PDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRI 340
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
D + +P ++SYT LI ++ + A +F ++ +N P++VTC+++++ E
Sbjct: 341 FDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLFE 400
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G E A F EM + + H IP++YT T+L ++ + +
Sbjct: 401 VGRTECAKIFFDEM-QAAGH-----------IPNLYTHCTLLGGYFKNGLVEEAMSHFHK 448
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA----RADRITPPALI 350
+ N + + +I + GK++ T+E L D IT A+I
Sbjct: 449 LERRREDTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMI 500
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 118/262 (45%), Gaps = 15/262 (5%)
Query: 71 KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP-NALAY 129
K + AF + +Q+ PSA ++ +++ ++ Y+ V FR++ K IP +A A
Sbjct: 51 KCLDDAFSLFRQMVTTKPLPSAVSFSKLLKALVHMKHYSSVVSIFREIHKLRIPVDAFAL 110
Query: 130 KVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK 189
+VN+ +TD S + ++GI + + L R L + K ++A+ K+ +
Sbjct: 111 STVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVR 170
Query: 190 V-ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFE 247
+P V Y ++ G+ Q A + M + P+ NI++ A+ + G+ +
Sbjct: 171 ENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIVIDAFCKDGMLD 230
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
A L EM + + + PDI T+ +++D +W+ + ++ M+H
Sbjct: 231 GATSLLNEMKQKN------------IPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLN 278
Query: 308 LHFNAKRHLRMILDASRAGKVE 329
++ + +I + GKVE
Sbjct: 279 IYPDVCTFNSVIDGLCKEGKVE 300
>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
Length = 761
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/338 (22%), Positives = 155/338 (45%), Gaps = 31/338 (9%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+ P+ V ++ L Q+G+IK ++ +M S + +P+ + Y
Sbjct: 436 LGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLS---------DTSPYGINCKPNAISY 486
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEFFRKVQ 119
+ +++ + + + A + +++K G P +Y ++ GK+ + Y F V
Sbjct: 487 SIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVD 546
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
P+ + VL++ L +EGK EA +E M +RG + + Y L + LC + E
Sbjct: 547 IGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISE 606
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--------KNFCSPNLV 231
A K+ K+ P VV+Y L++ +GNI+ A + +M NF P+++
Sbjct: 607 ATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNF-KPDVI 665
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
+ +I++ +HG +EA +LF+EM K VIP++ ++ +++
Sbjct: 666 SYSIIIDGLCKHGREDEARELFKEM------------KALGVIPNVISYTSLIHGFCRSG 713
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ +D + ++ M+ G+ NA + MI + G+++
Sbjct: 714 KLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQID 751
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/363 (22%), Positives = 161/363 (44%), Gaps = 33/363 (9%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+ PD +AY ++ L Q G+I + M + TG R+ + +P ++ Y
Sbjct: 255 LGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLN------DTG---RYGIKCKPTLISY 305
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
+ +++ + ++ + A + +++K QG P +Y ++ GK+ F ++
Sbjct: 306 SIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLD 365
Query: 121 SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
I P+ VL++ L ++GK EA +E + +RG + L + LC + +
Sbjct: 366 VGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISK 425
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-------FCSPNLVT 232
A K+ K+ P VV+ L++ SGNI+ A + M + C PN ++
Sbjct: 426 ATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAIS 485
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+I++ + G +EA +LF+EM K VIPD+ ++ +++ +
Sbjct: 486 YSIIIDGLCKCGREDEARELFKEM------------KALGVIPDVISYTSLIHGFCRSGK 533
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPA 348
W D + ++ M+ G+ + +I + GKV ELLE+ + + +T
Sbjct: 534 WKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTT 593
Query: 349 LIK 351
L+K
Sbjct: 594 LVK 596
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/363 (21%), Positives = 156/363 (42%), Gaps = 33/363 (9%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+ PD +AY ++ L Q G I + M + ++ + +P +V Y
Sbjct: 74 LGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLN---------DTSQYGIKCKPTLVSY 124
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
+ +++ + ++ + A + +++K QG P +Y ++ GK+ F ++
Sbjct: 125 SIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLD 184
Query: 121 SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
I + +L++ L +EGK EA +E M +RG + Y L + LC + E
Sbjct: 185 VGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISE 244
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-------FCSPNLVT 232
A + K+ +P ++Y L++ +GNI A + +M N C P L++
Sbjct: 245 ATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLIS 304
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+I++ + +EA +LF+EM ++PD+ ++ T++ +
Sbjct: 305 YSIIIDGLCKDRREDEARELFKEMKAQG------------IMPDVISYTTLIHGFCLSGK 352
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPA 348
W+ + ++ ML G+ + +I + GKV +LLE+ + D +T
Sbjct: 353 WEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTT 412
Query: 349 LIK 351
L+K
Sbjct: 413 LVK 415
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 23/239 (9%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ VL++ +EGK EA +E M +RG + Y L + LC + EA
Sbjct: 8 PDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQL 67
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-------FCSPNLVTCNIM 236
+ K+ +P ++Y L++ +G I A ++ +M N C P LV+ +I+
Sbjct: 68 FMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSII 127
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ + +EA +LF+EM ++PD+ ++ +++ +W+
Sbjct: 128 IDGLCKDRREDEARELFKEMKAQG------------MMPDVISYTSLIHGFCRSGKWEKA 175
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPALIK 351
+ ++ ML G+ + +I + GKV ELLE+ + D +T LIK
Sbjct: 176 KCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIK 234
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/246 (20%), Positives = 104/246 (42%), Gaps = 29/246 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIK-------ELFDV-----IDSMRSLPKKKFKTGTLERWDPR 52
PD ++Y S+ ++G K E+ D+ + + L K G + +
Sbjct: 516 PDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANEL 575
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
LE P+ V Y ++ + A + ++++ G P TYG +M+ +
Sbjct: 576 LEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQ 635
Query: 105 CGKYNLVYEFFRKV-------QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
G E +K+ ++ P+ ++Y ++++ L + G+ DEA ++M+ G+
Sbjct: 636 TGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGV 695
Query: 158 VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217
+ + Y L C +GK E+A +++ + V+Y+ +I G I A
Sbjct: 696 IPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA-- 753
Query: 218 IFNQMK 223
+F +M+
Sbjct: 754 LFQKME 759
>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 917
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/338 (22%), Positives = 155/338 (45%), Gaps = 31/338 (9%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+ P+ V ++ L Q+G+IK ++ +M S + +P+ + Y
Sbjct: 592 LGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLS---------DTSPYGINCKPNAISY 642
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEFFRKVQ 119
+ +++ + + + A + +++K G P +Y ++ GK+ + Y F V
Sbjct: 643 SIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVD 702
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
P+ + VL++ L +EGK EA +E M +RG + + Y L + LC + E
Sbjct: 703 IGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISE 762
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--------KNFCSPNLV 231
A K+ K+ P VV+Y L++ +GNI+ A + +M NF P+++
Sbjct: 763 ATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNF-KPDVI 821
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
+ +I++ +HG +EA +LF+EM K VIP++ ++ +++
Sbjct: 822 SYSIIIDGLCKHGREDEARELFKEM------------KALGVIPNVISYTSLIHGFCRSG 869
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ +D + ++ M+ G+ NA + MI + G+++
Sbjct: 870 KLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQID 907
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/315 (22%), Positives = 138/315 (43%), Gaps = 31/315 (9%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
DIV Y+ ++ + + A + +K+ G +P A YG +M+ + GK N+
Sbjct: 269 DIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLH 328
Query: 116 RKVQ--------KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+++ K P+ +L++ L +EGK EA +E M +RG + Y L
Sbjct: 329 QEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTL 388
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--- 224
+ LC + EA + K+ +P ++Y L++ +GNI A + +M N
Sbjct: 389 IKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTG 448
Query: 225 ----FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
C P L++ +I++ + +EA +LF+EM ++PD+ ++
Sbjct: 449 RYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQG------------IMPDVISY 496
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWE 336
T++ +W+ + ++ ML G+ + +I + GKV +LLE+ +
Sbjct: 497 TTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQ 556
Query: 337 HLARADRITPPALIK 351
D +T L+K
Sbjct: 557 RGCILDVVTCTTLVK 571
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/363 (22%), Positives = 160/363 (44%), Gaps = 33/363 (9%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+ PD + Y ++ L Q G+I + M + TG R+ + +P ++ Y
Sbjct: 411 LGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLN------DTG---RYGIKCKPTLISY 461
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
+ +++ + ++ + A + +++K QG P +Y ++ GK+ F ++
Sbjct: 462 SIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLD 521
Query: 121 SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
I P+ VL++ L ++GK EA +E + +RG + L + LC + +
Sbjct: 522 VGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISK 581
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-------FCSPNLVT 232
A K+ K+ P VV+ L++ SGNI+ A + M + C PN ++
Sbjct: 582 ATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAIS 641
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+I++ + G +EA +LF+EM K VIPD+ ++ +++ +
Sbjct: 642 YSIIIDGLCKCGREDEARELFKEM------------KALGVIPDVISYTSLIHGFCRSGK 689
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPA 348
W D + ++ M+ G+ + +I + GKV ELLE+ + + +T
Sbjct: 690 WKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTT 749
Query: 349 LIK 351
L+K
Sbjct: 750 LVK 752
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/353 (20%), Positives = 151/353 (42%), Gaps = 31/353 (8%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+ PD + Y ++ L Q G+I + M + TG R+ + +P ++ Y
Sbjct: 118 LGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLN------DTG---RYGIKCKPTLISY 168
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
+ +++ + ++ + A + +++K QG P +Y ++ GK+ F ++
Sbjct: 169 SIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLD 228
Query: 121 SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
I P+ VL++ +EGK EA +E M RG + Y L + LC + E
Sbjct: 229 VGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISE 288
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--------PNLV 231
A + K+ +P ++Y L++ +G I A ++ +M N S P++
Sbjct: 289 ATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVT 348
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T ++++ + G EA +L + M + +G ++ DI T++T++ E
Sbjct: 349 TSSMLIDILCKEGKVIEANELLEVMIQ-----------RGCIL-DIVTYSTLIKGLCMEH 396
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL-LEITWEHLARADR 343
R + ++ M G +A + ++ + G + + L++ E L R
Sbjct: 397 RISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGR 449
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 124/310 (40%), Gaps = 48/310 (15%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD +N ++N K+ + + ++G P TY
Sbjct: 6 LFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTY----------------- 48
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
S P+ +L++ L +EGK EA +E M +RG + Y L + LC
Sbjct: 49 --------SIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLC 100
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-------F 225
+ EA + K+ +P ++Y L++ +GNI A + +M N
Sbjct: 101 MEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIK 160
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
C P L++ +I++ + +EA +LF+EM ++PD+ ++ +++
Sbjct: 161 CKPTLISYSIIIDGLCKDRREDEARELFKEMKAQG------------MMPDVISYTSLIH 208
Query: 286 ACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARA 341
+W+ + ++ ML G+ + +I + GKV ELLE+
Sbjct: 209 GFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCIL 268
Query: 342 DRITPPALIK 351
D +T LIK
Sbjct: 269 DIVTYSTLIK 278
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 74/345 (21%), Positives = 143/345 (41%), Gaps = 56/345 (16%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
DIV Y+ ++ + A W+ +++ G +P A TYG +M+ + G N+ +
Sbjct: 88 DIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLH 147
Query: 116 RKVQKSY-------IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
+++ P ++Y ++++ L ++ + DEA ++M+ +G++ Y L
Sbjct: 148 QEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLI 207
Query: 169 RCLCSAGKCEEAL-------------------MQMDKICK-----VANKPL--------- 195
C +GK E+A + +D CK AN+ L
Sbjct: 208 HGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCI 267
Query: 196 --VVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKL 252
+V+Y+ LI+ I A +F MK C P+ + ++K + G A+ L
Sbjct: 268 LDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHL 327
Query: 253 FQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
QEM D++ +Y K + PD+ T + ++D E + + + + M+ G +
Sbjct: 328 HQEMLNDTS----QYGIK-CIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDI 382
Query: 313 KRHLRMILDASRAGKVELLEITWEHLA------RADRITPPALIK 351
+ +I ++ E TW ++ R D IT L+K
Sbjct: 383 VTYSTLIKGLCMEHRIS--EATWLFMSMQKLGCRPDAITYGTLMK 425
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 105/245 (42%), Gaps = 19/245 (7%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD---------LARCLCSA 174
P++ + +L+N L + +E ++A+ + RRG + Y L LC
Sbjct: 8 PDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDILCKE 67
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
GK EA ++ + + +V+Y+ LI+ I A ++F M+ C P+ +T
Sbjct: 68 GKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITY 127
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
++K + G A++L QEM D+ + P + +++ ++D ++R
Sbjct: 128 GTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCK------PTLISYSIIIDGLCKDRRE 181
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARAD---RITPPALI 350
D+ ++K M G+ + + +I +GK E + + + +T ++
Sbjct: 182 DEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVL 241
Query: 351 KERFC 355
+ FC
Sbjct: 242 IDMFC 246
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/244 (19%), Positives = 101/244 (41%), Gaps = 27/244 (11%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIK-------ELFDV-----IDSMRSLPKKKFKTGTLER 48
+ PD ++Y S+ ++G K E+ D+ + + L K G +
Sbjct: 668 LGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIE 727
Query: 49 WDPRLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
+ LE P+ V Y ++ + A + ++++ G P TYG +M+
Sbjct: 728 ANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMK 787
Query: 101 VMLACGKYNLVYEFFRKV-------QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDME 153
+ G E +K+ ++ P+ ++Y ++++ L + G+ DEA ++M+
Sbjct: 788 GLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMK 847
Query: 154 RRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQ 213
G++ + Y L C +GK E+A +++ + V+Y+ +I G I
Sbjct: 848 ALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQID 907
Query: 214 NAAY 217
A +
Sbjct: 908 KALF 911
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 82/186 (44%), Gaps = 22/186 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+TV Y ++ L I E + M+ L G L PD+V Y ++
Sbjct: 742 PNTVTYTTLVKGLCMNDRISEATQLFMKMQKL-------GCL--------PDVVTYGTLM 786
Query: 65 NACVRRKQWEGAFWVLQQ-LKQQGQ-----KPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
+ + A + ++ L GQ KP +Y ++++ + G+ + E F+++
Sbjct: 787 KGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEM 846
Query: 119 QK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+ IPN ++Y L++ R GK ++A +M +G+ +A Y + C G+
Sbjct: 847 KALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQI 906
Query: 178 EEALMQ 183
++AL Q
Sbjct: 907 DKALFQ 912
>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Cucumis sativus]
gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Cucumis sativus]
Length = 783
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 144/320 (45%), Gaps = 40/320 (12%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFK------------------ 42
M+ PD V Y ++ Q E++ +I+ M KK K
Sbjct: 347 MNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEM---DKKGVKCNAVTYNIILKWMCKKGN 403
Query: 43 ----TGTLERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGL 97
T TL++ + L PD V YN ++ A + + AF ++ ++ +G K T
Sbjct: 404 MTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNT 463
Query: 98 VMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
++ + K + Y K YI + ++Y +L+ +++ K D A++ ++M+ R
Sbjct: 464 ILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQ 523
Query: 157 IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
I+ S Y + LC + K ++A+ +++++ + P +Y +I GN++ A
Sbjct: 524 IMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAF 583
Query: 217 YIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
N+M +N P++ TCNI+++ G+ E+A+KLF + I
Sbjct: 584 QFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDI------------ 631
Query: 276 DIYTFNTMLDACAAEKRWDD 295
D+ T+NT++ + E ++++
Sbjct: 632 DVVTYNTIISSLCKEGKFEN 651
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 115/248 (46%), Gaps = 24/248 (9%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG--KYNLVY 112
PD V YN +L+A ++R+ + A +L +K +G P+ TY ML CG + L+
Sbjct: 246 PDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYN-----MLVCGYCRLGLLK 300
Query: 113 EFFRKVQ----KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
E + ++ + +P Y +LVN +GK DEA ++ME+ ++ Y L
Sbjct: 301 EATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLI 360
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
E ++++ K K V+Y +++ GN+ A ++M +N S
Sbjct: 361 DGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLS 420
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P+ VT N ++ AY + G +A ++ EM KGL I D +T NT+L
Sbjct: 421 PDCVTYNTLIGAYCKAGKMGKAFRMMDEMTS-----------KGLKI-DTWTLNTILHCL 468
Query: 288 AAEKRWDD 295
EK+ D+
Sbjct: 469 CVEKKLDE 476
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/291 (19%), Positives = 111/291 (38%), Gaps = 52/291 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ +AG + + F ++D M S L+ D N +L
Sbjct: 421 PDCVTYNTLIGAYCKAGKMGKAFRMMDEMTS---------------KGLKIDTWTLNTIL 465
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ K+ + A+ +L ++G +YG+++ K + + ++++ I
Sbjct: 466 HCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIM 525
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY------------------- 164
P+ + Y ++ L + K D+A+ + +M G+V Y
Sbjct: 526 PSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQF 585
Query: 165 -------------YD---LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
Y L R LC G E+AL + + VV+Y +I +
Sbjct: 586 HNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCK 645
Query: 209 SGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
G +NA + +M+ P+ T +++ A + G +EA + +M E
Sbjct: 646 EGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVE 696
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 23/176 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LP------------------KKKFKT 43
P T+ Y S+ L Q+ + + D ++ M +P +K F+
Sbjct: 526 PSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQF 585
Query: 44 GTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
E + +PD+ N +L R E A + L +G+ TY ++ +
Sbjct: 586 HN-EMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLC 644
Query: 104 ACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
GK+ Y+ +++ K P+ YKV++ L G+ EA M GIV
Sbjct: 645 KEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGIV 700
>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 129/279 (46%), Gaps = 14/279 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD +N ++NA + K+ + + + ++++ Q P+ TY ++++ + CG
Sbjct: 120 LRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKAL 179
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F ++ + PN Y +++ L + G D+A E+M G+V + +Y L L
Sbjct: 180 KVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGL 239
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
+G+ + A ++ +P V++T L+ +G A IF + ++ C+ ++
Sbjct: 240 GRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDV 299
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
N+++ + +EA ++F E+ ED ++PD+YTFN ++D
Sbjct: 300 NLYNVLIDTLCKSKRLDEAWEIFGELEEDG------------LVPDVYTFNALMDGLCKS 347
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
R D ++ M G + + +I ++G+VE
Sbjct: 348 GRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVE 386
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 137/303 (45%), Gaps = 34/303 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y S+ LG++GH+ + F + + M S L VVYN+++
Sbjct: 192 PNIFTYTSMIDGLGKSGHVDKAFFLFEEMTS---------------EGLVATRVVYNSLI 236
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ R + + A + +++ +G +P T+ ++ + G+ + F++ + +
Sbjct: 237 HGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARD--VG 294
Query: 125 NAL---AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
AL Y VL++TL + + DEA ++E G+V + L LC +G+ +A
Sbjct: 295 CALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAF 354
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAY 240
+ + + + P V Y LI SG ++ A + +M++ P++VT N ++
Sbjct: 355 ILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDES 414
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ G E+A++LF+E++ KG + T+NT+L+ R D+ ++
Sbjct: 415 CKGGRIEDALRLFEEIS-----------AKGF--ANTVTYNTILNGLCMAGRVDEAYKLF 461
Query: 301 KRM 303
M
Sbjct: 462 NGM 464
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 111/256 (43%), Gaps = 14/256 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+I Y ++++ + + AF++ +++ +G + Y ++ + G+ + +
Sbjct: 192 PNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKL 251
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
FR+ + K P+ + + LV L G+ EA ++ G LY L LC
Sbjct: 252 FREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCK 311
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
+ + +EA ++ + P V ++ L+ SG I +A + MK C+P++
Sbjct: 312 SKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTV 371
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ + G EEA +L EM + E PD+ T+NT++D R
Sbjct: 372 YNTLIDGLRKSGRVEEAGQLLLEM----QSLGYE--------PDVVTYNTLIDESCKGGR 419
Query: 293 WDDLELVYKRMLHHGL 308
+D +++ + G
Sbjct: 420 IEDALRLFEEISAKGF 435
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 106/245 (43%), Gaps = 24/245 (9%)
Query: 85 QQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTD 143
Q+G PS ++E++ ++N E +V+KS YI + L G +
Sbjct: 12 QRGGVPSVRACTTLVEMLGIARRFNEAEEVLAEVEKSRYILQPRIFIELARGYASAGLLE 71
Query: 144 EAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLI 203
++V A++ ME +A+ Y L AG ++AL + + +P ++ L+
Sbjct: 72 KSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLM 131
Query: 204 QACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNH 262
A + + + +F +M+N CSPN++T +I++ A + G E+A+K+F +M
Sbjct: 132 NAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCR 191
Query: 263 INREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL----------ELVYKRMLHHGLHFNA 312
P+I+T+ +M+D D LV R++++ L
Sbjct: 192 ------------PNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGL 239
Query: 313 KRHLR 317
R R
Sbjct: 240 GRSGR 244
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 105/258 (40%), Gaps = 50/258 (19%)
Query: 110 LVYEFFR--KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ Y+FF+ + Q+ +P+ A LV L + +EA + ++E+ + ++ +L
Sbjct: 1 MAYKFFKWVRTQRGGVPSVRACTTLVEMLGIARRFNEAEEVLAEVEKSRYILQPRIFIEL 60
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA------------ 215
AR SAG E+++ + ++ +Y LI A + +G Q A
Sbjct: 61 ARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGL 120
Query: 216 ---AYIFNQMKNF---------------------CSPNLVTCNIMVKAYLEHGLFEEAMK 251
Y FN + N CSPN++T +I++ A + G E+A+K
Sbjct: 121 RPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALK 180
Query: 252 LFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
+F +M P+I+T+ +M+D D +++ M GL
Sbjct: 181 VFLDMKSRGCR------------PNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVAT 228
Query: 312 AKRHLRMILDASRAGKVE 329
+ +I R+G+ +
Sbjct: 229 RVVYNSLIHGLGRSGRAD 246
>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 147/315 (46%), Gaps = 22/315 (6%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R+ ++V ++ V+N + +++ A V++ +K G PS TY +++ GK
Sbjct: 224 RIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKA 283
Query: 112 YEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
++ V K PN + + +L++ R+ A E+M+R+G+ + Y L
Sbjct: 284 DALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLING 343
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
LCS GK +EAL DK+ + KP VV+Y LI ++ A + + + K +PN
Sbjct: 344 LCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPN 403
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
++T N ++ AY + G ++A L + M D+ V P++ T+N ++
Sbjct: 404 VITFNTLIDAYGKAGRMDDAF-LLRSMMLDTG-----------VCPNVSTYNCLIVGFCR 451
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLE---ITWEHLARAD 342
E + + K M +GL + + ++ + G+ V LL+ + + RA+
Sbjct: 452 EGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRAN 511
Query: 343 RITPPALIKERFCNR 357
+T LIK FCN+
Sbjct: 512 IVTYNVLIKG-FCNK 525
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 112/282 (39%), Gaps = 56/282 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y S+ L G + E + D M + L+P++V YNA++
Sbjct: 332 PNVVTYNSLINGLCSNGKLDEALGLQDKMSGMG---------------LKPNVVTYNALI 376
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N ++K + A +L + ++G P+ T+ +++ G+ + + + + +
Sbjct: 377 NGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVC 436
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y L+ REG EA ++ME G+ Y L LC G+ +A+
Sbjct: 437 PNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRL 496
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
+D++ + K N+VT N+++K +
Sbjct: 497 LDEMTLMEKKGR-------------------------------RANIVTYNVLIKGFCNK 525
Query: 244 GLFEEAMKLFQEMAEDSNHINR-EYD-------KKGLVIPDI 277
G EEA +L EM E NR YD +KG IPDI
Sbjct: 526 GKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGF-IPDI 566
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 112/285 (39%), Gaps = 62/285 (21%)
Query: 106 GKYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G+ +L E F R + +AL+ ++ +L +EG+ S ++M RR I + +
Sbjct: 173 GEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTF 232
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-- 222
+ LC GK ++A ++ + P V++Y +I +G + A + +M
Sbjct: 233 DVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVA 292
Query: 223 --------------KNFC--------------------SPNLVTCNIMVKAYLEHGLFEE 248
FC PN+VT N ++ +G +E
Sbjct: 293 KRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDE 352
Query: 249 AMKLFQEMA------------------------EDSNHINREYDKKGLVIPDIYTFNTML 284
A+ L +M+ +++ + + K+GL P++ TFNT++
Sbjct: 353 ALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLA-PNVITFNTLI 411
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
DA R DD L+ ML G+ N + +I+ R G V+
Sbjct: 412 DAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVK 456
>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Vitis vinifera]
Length = 609
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 124/283 (43%), Gaps = 26/283 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y S+ L G + E + D M + L+P++V YNA++
Sbjct: 332 PNVVTYNSLINGLCSNGKLDEALGLQDKMSGMG---------------LKPNVVTYNALI 376
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N ++K + A +L + ++G P+ T+ +++ G+ + + + + +
Sbjct: 377 NGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVC 436
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y L+ REG EA ++ME G+ Y L LC G+ +A+
Sbjct: 437 PNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRL 496
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+D++ +V P ++Y LI GN A + M K N+VT N+++K +
Sbjct: 497 LDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCN 556
Query: 243 HGLFEEAMKLFQEMAEDSNHINR-EYD-------KKGLVIPDI 277
G EEA +L EM E NR YD +KG IPDI
Sbjct: 557 KGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGF-IPDI 598
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 141/309 (45%), Gaps = 18/309 (5%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R+ ++V ++ V+N + +++ A V++ +K G PS TY +++ GK
Sbjct: 224 RIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKA 283
Query: 112 YEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
++ V K PN + + +L++ R+ A E+M+R+G+ + Y L
Sbjct: 284 DALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLING 343
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
LCS GK +EAL DK+ + KP VV+Y LI ++ A + + + K +PN
Sbjct: 344 LCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPN 403
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
++T N ++ AY + G ++A L + M D+ V P++ T+N ++
Sbjct: 404 VITFNTLIDAYGKAGRMDDAF-LLRSMMLDTG-----------VCPNVSTYNCLIVGFCR 451
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEITWEHLARADRIT 345
E + + K M +GL + + ++ + G+ V LL+ +E +T
Sbjct: 452 EGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLT 511
Query: 346 PPALIKERF 354
ALI F
Sbjct: 512 YNALIDGYF 520
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 113/285 (39%), Gaps = 62/285 (21%)
Query: 106 GKYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G+ +L E F R + +AL+ ++ +L +EG+ S ++M RR I + +
Sbjct: 173 GEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTF 232
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG-------------- 210
+ LC GK ++A ++ + P V++Y +I +G
Sbjct: 233 DVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVA 292
Query: 211 ---------------------NIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEE 248
N+ A +F +M + PN+VT N ++ +G +E
Sbjct: 293 KRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDE 352
Query: 249 AMKLFQEMA------------------------EDSNHINREYDKKGLVIPDIYTFNTML 284
A+ L +M+ +++ + + K+GL P++ TFNT++
Sbjct: 353 ALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLA-PNVITFNTLI 411
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
DA R DD L+ ML G+ N + +I+ R G V+
Sbjct: 412 DAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVK 456
>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 143/330 (43%), Gaps = 30/330 (9%)
Query: 5 PDTVAYRSIAVTLGQAG-HIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
P+ V Y ++ G+ G K + ++ + M + G ++PD + YN++
Sbjct: 255 PNLVTYNAVIDACGKGGVEFKRVVEIFEEM-------LRNG--------VQPDRITYNSL 299
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSY 122
L C R WE A + ++ +G TY +++ + G+ +L YE ++ K
Sbjct: 300 LAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKI 359
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+PN + Y + + + G+ ++A++ +M+ GI Y L G+ E+AL
Sbjct: 360 LPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALK 419
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
++ K VV+Y L+ G +F +M K+ PNL+T + ++ Y
Sbjct: 420 VCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYS 479
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ L+EEAM++F RE+ + GL D+ ++ +++A D L+
Sbjct: 480 KGSLYEEAMEVF-----------REFKQAGLK-ADVVLYSELINALCKNGLVDSAVLLLD 527
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELL 331
M G+ N + +I R+ E L
Sbjct: 528 EMTKEGIRPNVVTYNSIIDAFGRSTTAEFL 557
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 137/295 (46%), Gaps = 38/295 (12%)
Query: 16 TLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEG 75
TLG+ G ++ L K F+T E + + ++A+++A + ++
Sbjct: 196 TLGRLGKVE-----------LAKGVFETALSEGYGN----TVFAFSALISAYGKSGYFDE 240
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGK----YNLVYEFFRKVQKSYI-PNALAYK 130
A V + +K G KP+ TY V++ ACGK + V E F ++ ++ + P+ + Y
Sbjct: 241 AIKVFESMKVSGLKPNLVTYNAVID---ACGKGGVEFKRVVEIFEEMLRNGVQPDRITYN 297
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
L+ R G + A + +M RGI Y L +C G+ + A M ++
Sbjct: 298 SLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGK 357
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNL--VTCNIMVKAYLEHGLFEE 248
P VV+Y+ + +G +++A ++N+MK F L V+ N ++ Y + G FE+
Sbjct: 358 KILPNVVTYSTMADGYAKAGRLEDALNLYNEMK-FLGIGLDRVSYNTLLSIYAKLGRFED 416
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
A+K+ +EM V D+ T+N +LD + +++++ V+K M
Sbjct: 417 ALKVCKEMGSSG------------VKKDVVTYNALLDGYGKQGKFNEVTRVFKEM 459
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 23/204 (11%)
Query: 103 LACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+ C + LV E RK ++ + +A+ ++TL R GK + A E G +
Sbjct: 170 IRCFDFALVREG-RKNERGKLASAM-----ISTLGRLGKVELAKGVFETALSEGYGNTVF 223
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG-NIQNAAYIFNQ 221
+ L +G +EA+ + + KP +V+Y +I AC G + IF +
Sbjct: 224 AFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEE 283
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
M +N P+ +T N ++ GL+E A LF EM I+R D+ D++T+
Sbjct: 284 MLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEM------IDRGIDQ------DVFTY 331
Query: 281 NTMLDACAAEKRWDDLELVYKRML 304
NT+LDA + ++L Y+ ML
Sbjct: 332 NTLLDAVC---KGGQMDLAYEIML 352
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 21 GHIKELFDVIDSMRSLPKKKFKTGTLE----------RWDPRLEPDIVVYNAVLNACVRR 70
GH+ + + + S + P KK + G E + ++P++V ++A+LNAC R
Sbjct: 590 GHVFKFYQQLVSEKEGPAKKERLGKEEIRSILSVFKKMHELEIKPNVVTFSAILNACSRC 649
Query: 71 KQWEGAFWVLQQLKQQGQKPSATTYGLVM---EVMLACGKYNLVYEFFRKVQKSYIPNAL 127
K E A +L++L+ + +GL+M E + +Y F +V++ A
Sbjct: 650 KSIEDASMLLEELRLFDNQVYGVAHGLLMGFSENVWIQAQY-----LFDEVKQMDSSTAS 704
Query: 128 A-YKVLVNTLWREGKTDEAVSAVEDMERRGI 157
A Y L + LW G+ A V + +RR +
Sbjct: 705 AFYNALTDMLWHFGQKRGAQLVVLEGKRRKV 735
>gi|302798519|ref|XP_002981019.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
gi|300151073|gb|EFJ17720.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
Length = 448
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 148/341 (43%), Gaps = 38/341 (11%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTG-------------TL 46
S P +AY+++ L + G +E +V+ M +S+P T +
Sbjct: 110 GSLPHVLAYKTMLDCLIKTGKTREASEVVGEMIKKSVPDGMTYTALISVLCKHNRADDAM 169
Query: 47 ERWDPRLEPDIV----VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
+ +D +E +IV VY ++L A R ++ +GA+ + ++ Q+G PSA+TYGL++ +
Sbjct: 170 KVFDIMVEKEIVPNVDVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCL 229
Query: 103 LACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEA-VSAVEDMERRGIVGS 160
G+ L Y+ ++ + ++P+ Y L+ G+ EA V E +E
Sbjct: 230 CNGGRSYLAYDIHSSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKAQLD 289
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
A +Y L LC A K EEAL + P + +Y LI + + A +F
Sbjct: 290 AGIYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFR 349
Query: 221 QM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
M K F SPN + + + + G EA + FQ+ E +PD
Sbjct: 350 AMEEKGF-SPNTMIYSTFIDGLCKVGKINEAHEFFQQSVERG------------CVPDNV 396
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
T+N ++ R D+ +Y+ M G + A R LR +
Sbjct: 397 TYNALIRGLFGANRMDEAHRLYREMGERG--YIADRSLRTL 435
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 123/285 (43%), Gaps = 17/285 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD+V +++ K+ + Q+L+ G Y +++ ++ G ++ ++
Sbjct: 42 DPDVVTCGLLVDKFCEMKRVGEVCELFQELESNGVAVGMLAYNAILKALMCSGDFDGGFK 101
Query: 114 FFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F V +P+ LAYK +++ L + GKT EA V +M ++ V Y L LC
Sbjct: 102 FSDIAVGDGSLPHVLAYKTMLDCLIKTGKTREASEVVGEMIKKS-VPDGMTYTALISVLC 160
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
+ ++A+ D + + P V YT L+ A + + A +F +M + P+
Sbjct: 161 KHNRADDAMKVFDIMVEKEIVPNVDVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSAS 220
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T ++++ G A + M + +PD T+ +++ C
Sbjct: 221 TYGLLLRCLCNGGRSYLAYDIHSSMRSRGH------------VPDENTYASLIYGCCMAG 268
Query: 292 RWDDLELVYKRMLH-HGLHFNAKRHLRMILDASRAGKV-ELLEIT 334
R + ++++K +L +A + +I RA KV E LE+T
Sbjct: 269 RITEAKVLFKEVLEGEKAQLDAGIYNVLIEGLCRASKVEEALEVT 313
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/211 (17%), Positives = 87/211 (41%), Gaps = 15/211 (7%)
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
V + Y P+ + +LV+ + E +++E G+ Y + + L +G
Sbjct: 37 VGEGYDPDVVTCGLLVDKFCEMKRVGEVCELFQELESNGVAVGMLAYNAILKALMCSGDF 96
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMV 237
+ D + P V++Y ++ + +G + A+ + +M P+ +T ++
Sbjct: 97 DGGFKFSDIAVGDGSLPHVLAYKTMLDCLIKTGKTREASEVVGEMIKKSVPDGMTYTALI 156
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+H ++AMK+F M E ++P++ + ++L A ++ D
Sbjct: 157 SVLCKHNRADDAMKVFDIMVEKE------------IVPNVDVYTSLLAAHCRTRKLDGAY 204
Query: 298 LVYKRMLHHGLHFNAKRH---LRMILDASRA 325
++ M+ G +A + LR + + R+
Sbjct: 205 RLFVEMIQRGYGPSASTYGLLLRCLCNGGRS 235
>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
Length = 650
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 141/306 (46%), Gaps = 29/306 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+TV + ++ L G + E +++D M L + PD++ N ++
Sbjct: 158 PNTVTFNTLLNGLCLEGRVFEAVELVDCM-----------VLSQH----VPDLITLNTIV 202
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + + A ++ ++ G +P+ TYG ++ M G + RK++ I
Sbjct: 203 NGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIK 262
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y ++++ L ++G+ D+A+S +ME +GI + Y L CS G+ ++
Sbjct: 263 PHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQL 322
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + P VV+++ LI + + G + A ++N+M PN +T N ++
Sbjct: 323 LRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCN 382
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+EA ++ M +++ D PDI+T+N +++ K+ DD ++++
Sbjct: 383 DKRLDEANQMMDLM------VSKGCD------PDIWTYNILINGFCKAKQVDDGMRLFRK 430
Query: 303 MLHHGL 308
M G+
Sbjct: 431 MSLRGM 436
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 118/259 (45%), Gaps = 14/259 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D+ N ++N RR++ AF + ++ + G +P+ T+ ++ + G+ E
Sbjct: 124 DLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELV 183
Query: 116 R-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
V ++P+ + +VN L + + EAV + M G + Y + +C +
Sbjct: 184 DCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKS 243
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTC 233
G AL + K+ KP VV+YT +I G + +A F++M+ N+ T
Sbjct: 244 GNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTY 303
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N ++ ++ G +++ +L ++M I R+ + P++ TF+ ++D+ E +
Sbjct: 304 NSLIGSFCSFGRWDDGAQLLRDM------ITRK------ITPNVVTFSALIDSLVKEGKL 351
Query: 294 DDLELVYKRMLHHGLHFNA 312
+ + +Y M+ G+ N
Sbjct: 352 TEAKDLYNEMITRGIEPNT 370
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 132/302 (43%), Gaps = 18/302 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P ++ +N + R KQ++ + +Q++ +G T +++ K +
Sbjct: 88 PTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAFSA 147
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y PN + + L+N L EG+ EAV V+ M V + LC
Sbjct: 148 MGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCL 207
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
+ EA+ + ++ +P +Y ++ SGN +A + +M++ P++VT
Sbjct: 208 KDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVT 267
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
I++ + G ++A+ F EM + KG + +++T+N+++ + + R
Sbjct: 268 YTIIIDNLCKDGRLDDALSFFSEM-----------ETKG-IKANVFTYNSLIGSFCSFGR 315
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARA---DRITPPA 348
WDD + + M+ + N +I + GK+ E ++ E + R + IT +
Sbjct: 316 WDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNS 375
Query: 349 LI 350
LI
Sbjct: 376 LI 377
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 61/325 (18%), Positives = 127/325 (39%), Gaps = 34/325 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL-------ERWDP---- 51
P V Y I L + G + + M + + F +L RWD
Sbjct: 263 PHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQL 322
Query: 52 -------RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
++ P++V ++A++++ V+ + A + ++ +G +P+ TY ++ +
Sbjct: 323 LRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCN 382
Query: 105 CGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
+ + + V K P+ Y +L+N + + D+ + M RG++
Sbjct: 383 DKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVT 442
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y L + C + K A ++ P +++Y L+ D+G ++ A I +QM
Sbjct: 443 YSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMH 502
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
K ++ NI++ ++A LF + KG V DI ++N
Sbjct: 503 KCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPS-----------KG-VKRDIQSYNI 550
Query: 283 MLDACAAEKRWDDLELVYKRMLHHG 307
ML + + ++++M G
Sbjct: 551 MLSGLCKRSSLSEADALFRKMKEDG 575
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/255 (18%), Positives = 100/255 (39%), Gaps = 51/255 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T+ Y S+ L + E ++D M S +PDI YN ++
Sbjct: 368 PNTITYNSLIYGLCNDKRLDEANQMMDLMVS---------------KGCDPDIWTYNILI 412
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + KQ + + +++ +G TY +++ K + + F++ V +
Sbjct: 413 NGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVH 472
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL-- 181
P + Y +L++ L G+ +EA+ ++ M + + +Y + +C+A K ++A
Sbjct: 473 PGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSL 532
Query: 182 -----------------MQMDKICKVAN----------------KPLVVSYTGLIQACLD 208
+ + +CK ++ +P +Y LI+A L
Sbjct: 533 FCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLR 592
Query: 209 SGNIQNAAYIFNQMK 223
+I + + +MK
Sbjct: 593 GNDITTSVQLIEEMK 607
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/182 (19%), Positives = 76/182 (41%), Gaps = 17/182 (9%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P + Y + L G ++E ++D M ++E DI +YN +
Sbjct: 472 HPGIMTYAILLDGLCDNGELEEALGILDQMHKC---------------KMELDIGIYNII 516
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SY 122
++ + + A+ + L +G K +Y +++ + + FRK+++ Y
Sbjct: 517 IHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGY 576
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ Y L+ R +V +E+M+R G S A + + S+G+ +++ +
Sbjct: 577 EPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGF-SSDASTVKIVMDMLSSGELDKSFL 635
Query: 183 QM 184
M
Sbjct: 636 NM 637
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 77/217 (35%), Gaps = 30/217 (13%)
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P + + L L R + D ++ + ME +GI + C C K A
Sbjct: 87 LPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAFS 146
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYL 241
M KI K+ +P V++ L+ G + A + + M + P+L+T N +V
Sbjct: 147 AMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLC 206
Query: 242 EHGLFEEAMKLFQEMAEDSNHINR--------------------------EYDKKGLVIP 275
EA+ L M + N+ E+ K + P
Sbjct: 207 LKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRK---IKP 263
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
+ T+ ++D + R DD + M G+ N
Sbjct: 264 HVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANV 300
>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
Length = 737
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 134/299 (44%), Gaps = 24/299 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD + Y+ ++N + + ++ A+ +L +++++G P Y +++ + G+ +
Sbjct: 165 PDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVH 224
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+R +Q++ P+ + Y +LV+ L + + +A +EDM G + Y L C
Sbjct: 225 YRDMQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKL 284
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
G +EA++ +++ + + P V +Y LI Q+ A + +M + C PN +T
Sbjct: 285 GNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITY 344
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDS------------------NHINREYDKKGLV-- 273
N ++ + ++ G + +A L Q M ++ Y+ L+
Sbjct: 345 NTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTD 404
Query: 274 ---IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+PDIYT+N M+ R DD + +RM G + + ++ +A +V+
Sbjct: 405 RGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVD 463
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 124/281 (44%), Gaps = 24/281 (8%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N +L+A VR+K+ + A+ + + + P + TY ++ + Y +++K
Sbjct: 136 NCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 195
Query: 121 -SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+P+ Y ++ L G+ D A+ DM+ R S Y L LC + + +
Sbjct: 196 RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQ-RNCAPSVITYTILVDALCKSARISD 254
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A + ++ + + P VV+Y LI GN+ A +FNQM +N CSP++ T NI++
Sbjct: 255 ASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILID 314
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
Y + ++ KL QEM + P+ T+NT++D+ ++ D
Sbjct: 315 GYCKQERPQDGAKLLQEMVKYGCE------------PNFITYNTLMDSLVKSGKYIDAFN 362
Query: 299 VYKRMLHHGL---HFNAKRHLRMILDASRAGKVELLEITWE 336
+ + ML HF + M KV L++ +E
Sbjct: 363 LAQMMLRRDCKPSHFTFNLMIDMFC------KVGQLDLAYE 397
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 126/268 (47%), Gaps = 14/268 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP+ + YN ++++ V+ ++ AF + Q + ++ KPS T+ L++++ G+ +L YE
Sbjct: 338 EPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYE 397
Query: 114 FFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F+ + +P+ Y ++++ R + D+A +E M G Y + LC
Sbjct: 398 LFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLC 457
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
A + +EA + + VV+ + LI S + +A + +M +N +P++V
Sbjct: 458 KASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVV 517
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
I++ + + ++++ F EM + KG V P + T++ ++D
Sbjct: 518 AYTILIHGFCKADQLDKSLAFFSEMLD-----------KGCV-PTVITYSIVIDKLCKSA 565
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMI 319
R D ++ K ML G+ +A + +I
Sbjct: 566 RVRDGCMLLKTMLERGVTPDAIVYTSVI 593
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/305 (19%), Positives = 129/305 (42%), Gaps = 29/305 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y SI L +A + E ++V + +R+ G D+V + ++
Sbjct: 444 PDVVTYNSIVSGLCKASQVDEAYEVYEVLRN-------GGYF--------LDVVTCSTLI 488
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + ++ + A +L+++++ G P Y +++ + + FF + + K +
Sbjct: 489 DGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCV 548
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y ++++ L + + + ++ M RG+ A +Y + LC + +EA
Sbjct: 549 PTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYEL 608
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ + P VV+Y L+ + A ++ M+ + C P+ VT N + + +
Sbjct: 609 YKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWK 668
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
++A +LFQ M K P + ++ +L AE++ D +++
Sbjct: 669 SAEHDKAFRLFQAM------------KSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEE 716
Query: 303 MLHHG 307
L G
Sbjct: 717 ALEAG 721
>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 821
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 140/325 (43%), Gaps = 29/325 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P++V Y ++ L G I E D+++ M + +EP + Y +
Sbjct: 265 PNSVTYSTLINGLCNEGRIGEAMDMLEEMT---------------EKGIEPTVYTYTVPI 309
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
++ + + A +++ + ++G PS TY ++ + GK L + K+ K +
Sbjct: 310 SSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLV 369
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L+N L EG+ A+ + ME G + +A Y + + L E+A++
Sbjct: 370 PNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVV 429
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+K+ K P VV+Y LI L G + NA MK + C P+ T ++ + +
Sbjct: 430 FNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCK 489
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + A F EM K + P+ +T+ M+D E + D +++R
Sbjct: 490 GGKLDSATSFFYEML------------KCGISPNQWTYTAMIDGYCKEGKIDVALSLFER 537
Query: 303 MLHHGLHFNAKRHLRMILDASRAGK 327
M +G + + + +I S+ +
Sbjct: 538 MEENGCSASIETYNAIISGLSKGNR 562
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 128/283 (45%), Gaps = 22/283 (7%)
Query: 27 FDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ 86
FD++ S +++ + F +G ++P ++ +N ++N ++ + + A V ++ Q
Sbjct: 175 FDMVTSAQNVYAQIFSSG--------VKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQF 226
Query: 87 GQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEA 145
P A TY ++ K + +E F R V+ PN++ Y L+N L EG+ EA
Sbjct: 227 DLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEA 286
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+ +E+M +GI + Y LC G+ ++A+ + + K P V +YT +I
Sbjct: 287 MDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISG 346
Query: 206 CLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
+G ++ A ++++M K PN VT N ++ G F A+K+F M N
Sbjct: 347 LFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLAN 406
Query: 265 REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
+ T+N ++ + +V+ +ML G
Sbjct: 407 AQ------------TYNQIIKGLFGMDDIEKAMVVFNKMLKDG 437
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/352 (23%), Positives = 147/352 (41%), Gaps = 39/352 (11%)
Query: 5 PDTVAYRSIA---VTLGQAGHIKELFDVIDSMRSLP---------KKKFKTGTLER---- 48
P+TV Y ++ T G+ G ++FD ++ +L K F +E+
Sbjct: 370 PNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVV 429
Query: 49 WDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
++ L+ P +V YN ++ ++R A L +K+ +P TY ++
Sbjct: 430 FNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCK 489
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK + FF ++ K I PN Y +++ +EGK D A+S E ME G S
Sbjct: 490 GGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIET 549
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y + L + EA K+ + +P ++YT LI + A IF++M
Sbjct: 550 YNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEME 609
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
K C PN T ++ + G + A +L + E P I T++T
Sbjct: 610 KKNCLPNAHTYTSLIYGLCQEGKVDAAERLTENGCE----------------PTIDTYST 653
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL-LEI 333
++ E R ++ + + M GL + + + +++ ++ KV+ LEI
Sbjct: 654 LVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEI 705
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 99/230 (43%), Gaps = 18/230 (7%)
Query: 134 NTLWRE-GKTDEAVSA---VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK 189
NTL + GK D SA + G+ S + + LC GK +EA++ +KI +
Sbjct: 166 NTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQ 225
Query: 190 VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEE 248
P +YT LI + + A +F++M K+ C+PN VT + ++ G E
Sbjct: 226 FDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGE 285
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
AM + +EM E KG + P +YT+ + + R DD + + M G
Sbjct: 286 AMDMLEEMTE-----------KG-IEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGC 333
Query: 309 HFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRL 358
+ + + +I RAGK+E L I H + + P + N L
Sbjct: 334 SPSVQTYTAIISGLFRAGKME-LAIGMYHKMLKEGLVPNTVTYNALINEL 382
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 4/205 (1%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+P+ + Y +++N + AF + +++++ P+A TY ++ + GK +
Sbjct: 578 LQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAE 637
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R + P Y LV+ L REG+++EA VE+M+ +G+ S +Y L C
Sbjct: 638 ---RLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHC 694
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLV 231
+ K + AL + + +P + Y LI A + A IF +K + +L+
Sbjct: 695 KSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLI 754
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEM 256
++V L+ G + MK M
Sbjct: 755 VWTVLVDGLLQEGDSDLCMKFLYLM 779
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 101/208 (48%), Gaps = 8/208 (3%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P+ Y A+++ + + + A + +++++ G S TY ++ + +++
Sbjct: 508 ISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAE 567
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+F K+ ++ PN + Y L+N L + T+ A +ME++ + +A Y L L
Sbjct: 568 KFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGL 627
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C GK + A +++ + +P + +Y+ L+ G A+ + MK SP++
Sbjct: 628 CQEGKVDAA----ERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSM 683
Query: 231 -VTCNIMVKAYLEHGLFEEAMKLFQEMA 257
+ C+++V A+ + + A+++F MA
Sbjct: 684 EIYCSLLV-AHCKSLKVDCALEIFNLMA 710
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 72/173 (41%), Gaps = 16/173 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y ++ L + G E ++++M+ + L P + +Y ++L
Sbjct: 646 PTIDTYSTLVSGLCREGRSNEASQLVENMK---------------EKGLSPSMEIYCSLL 690
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
A + + + A + + +G +P Y +++ + + F+ + +K +
Sbjct: 691 VAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWN 750
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
+ + + VLV+ L +EG +D + + ME R S Y LAR L GK
Sbjct: 751 SDLIVWTVLVDGLLQEGDSDLCMKFLYLMESRNCTPSLHTYIILARELSKVGK 803
>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
Length = 878
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 138/320 (43%), Gaps = 43/320 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD YR++ G + E+ ++D M + G ++PD V+N ++
Sbjct: 339 PDIATYRTLLQGYATKGALVEMHALLDLM-------VRNG--------IQPDHHVFNILI 383
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
A ++++ + A V +++Q G P+ YG V++V+ G + +F + + +
Sbjct: 384 CAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLT 443
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L++ L K D+A + +M RGI + + + C G+ E+
Sbjct: 444 PNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKL 503
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
D + ++ KP +++Y LI C +G + A + M + P++VT ++ Y
Sbjct: 504 FDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCR 563
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD--------ACAAE---- 290
++A+ LF+EM V P+I T+N +L A A E
Sbjct: 564 VSRMDDALALFKEMVSSG------------VSPNIITYNIILQGLFHTRRTAAAKELYVS 611
Query: 291 --KRWDDLELVYKRMLHHGL 308
K LEL ++ HGL
Sbjct: 612 ITKSGTQLELSTYNIILHGL 631
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 143/333 (42%), Gaps = 48/333 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y SI L +A + + +V+++M K G + PD + YN++L
Sbjct: 234 PDVVTYSSIIAALCKAQAMDKAMEVLNTM-------VKNGVM--------PDCMTYNSIL 278
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ Q + A L++++ G +P+ TY +M + G+ + F + K +
Sbjct: 279 HGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLE 338
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y+ L+ +G E + ++ M R GI ++ L K ++A++
Sbjct: 339 PDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLV 398
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
K+ + P VV Y +I SG++ +A F QM + +T NI+V L H
Sbjct: 399 FSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMID----EGLTPNIIVYTSLIH 454
Query: 244 GL-----FEEAMKLFQEMAEDS--------NHINREYDKKGLVI---------------P 275
GL +++A +L EM + N I + K+G VI P
Sbjct: 455 GLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKP 514
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
DI T+NT++D C + D+ + M+ G+
Sbjct: 515 DIITYNTLIDGCCLAGKMDEATKLLASMVSVGV 547
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 110/259 (42%), Gaps = 14/259 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V YN VLN + + A+ ++ +G P TY ++ + + E
Sbjct: 199 PDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEV 258
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
V+ +P+ + Y +++ G+ EA+ ++ M G+ + Y L LC
Sbjct: 259 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCK 318
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+ EA D + K +P + +Y L+Q G + + + M +N P+
Sbjct: 319 NGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHV 378
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
NI++ AY + ++AM +F +M + + P++ + T++D
Sbjct: 379 FNILICAYAKQEKVDQAMLVFSKMRQHG------------LNPNVVCYGTVIDVLCKSGS 426
Query: 293 WDDLELVYKRMLHHGLHFN 311
DD L +++M+ GL N
Sbjct: 427 VDDAMLYFEQMIDEGLTPN 445
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 133/310 (42%), Gaps = 18/310 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D + PD+V Y++++ A + + + A VL + + G P TY ++ + G
Sbjct: 226 EMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSG 285
Query: 107 KYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ +K++ + PN + Y L+N L + G++ EA + M +RG+ A Y
Sbjct: 286 QPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYR 345
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
L + + G E +D + + +P + LI A + A +F++M+
Sbjct: 346 TLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQH 405
Query: 226 -CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
+PN+V ++ + G ++AM F++M ++ + P+I + +++
Sbjct: 406 GLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEG------------LTPNIIVYTSLI 453
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLAR 340
+WD E + ML G+ N +I + G+V +L ++ +
Sbjct: 454 HGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVK 513
Query: 341 ADRITPPALI 350
D IT LI
Sbjct: 514 PDIITYNTLI 523
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/324 (20%), Positives = 142/324 (43%), Gaps = 30/324 (9%)
Query: 56 DIVVYNAVLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
D + + +L C ++ + VL+++ + G P +Y +++ + + E
Sbjct: 126 DAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALEL 185
Query: 115 FRKVQK----SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ P+ ++Y ++N ++EG +D+A S +M RGI+ Y +
Sbjct: 186 LHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAA 245
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
LC A ++A+ ++ + K P ++Y ++ SG + A +M+ + PN
Sbjct: 246 LCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPN 305
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKGLVI------- 274
+VT + ++ ++G EA K+F M + + + Y KG ++
Sbjct: 306 VVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLD 365
Query: 275 --------PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
PD + FN ++ A A +++ D LV+ +M HGL+ N + +I ++G
Sbjct: 366 LMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSG 425
Query: 327 KVELLEITWEHLARADRITPPALI 350
V+ + +E + + +TP ++
Sbjct: 426 SVDDAMLYFEQMID-EGLTPNIIV 448
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 128/313 (40%), Gaps = 38/313 (12%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PDI+ YN +++ C + + A +L + G KP TYG ++ + +
Sbjct: 512 VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDAL 571
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F+++ S + PN + Y +++ L+ +T A + + G + Y + L
Sbjct: 572 ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGL 631
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQMKNFCSPNL 230
C +EAL +C + ++ +I A L G + A +F N P++
Sbjct: 632 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDV 691
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T ++M + +E G EE LF M E + C+A+
Sbjct: 692 RTYSLMAENLIEQGSLEELDDLFLSMEE--------------------------NGCSAD 725
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMI------LDASRAG-KVELLEITWEHLARADR 343
R L + +++L G A +L MI L+AS A +E I WE ++R
Sbjct: 726 SRM--LNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLLESSPIVWEQISRISH 783
Query: 344 ITPP-ALIKERFC 355
++ LIK+ C
Sbjct: 784 LSVNLKLIKQPKC 796
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 14/169 (8%)
Query: 145 AVSAVEDMERRG---IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
AVS M R G + + Y L C C AG+ + + + K + +++T
Sbjct: 73 AVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTP 132
Query: 202 LIQA-CLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
L++ C D + +M C P++ + N ++K + +EA++L MA+
Sbjct: 133 LLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMAD- 191
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
D+ G PD+ ++NT+L+ E D Y ML G+
Sbjct: 192 --------DRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGI 232
>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Glycine max]
Length = 746
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/307 (22%), Positives = 134/307 (43%), Gaps = 24/307 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V + + L +A I E V D +R K G+ W +EPD+V++N ++
Sbjct: 314 PSVVTFGILVNHLCKARRIDEALQVFDRLRG------KGGS--NW-VGVEPDVVLFNTLI 364
Query: 65 NACVRRKQWEGAFWVLQQLKQQG-QKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
+ + + E +L+++K +P+ TY +++ G ++ +E FR++ + +
Sbjct: 365 DGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGV 424
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN + LV+ L + G+ AV +M+ +G+ G+AA Y L C A+
Sbjct: 425 QPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQ 484
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTC-NIMVKAYL 241
+++ P V Y LI +G + +A+ + +++K +C N+++ +
Sbjct: 485 CFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFC 544
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ E +L EM E V PD T+NT++ + V +
Sbjct: 545 KKKKLERVYELLTEMEETG------------VKPDTITYNTLISYLGKTGDFATASKVME 592
Query: 302 RMLHHGL 308
+M+ GL
Sbjct: 593 KMIKEGL 599
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 25/252 (9%)
Query: 79 VLQQLKQQGQKPSATTYGLVMEVMLACG--KYNLVYEFFRKVQK-SYIPNALAYKVLVNT 135
++ +L ++G P + L V CG K + +E V + +A + L+
Sbjct: 233 LVAKLGERGVFPDG--FKLTQLVGKLCGDQKNGVAWEVLHCVMRLGGAVDAASCNALLTW 290
Query: 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK------ 189
L R + +ME+R I S + L LC A + +EAL D++
Sbjct: 291 LGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNW 350
Query: 190 VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK--NFCSPNLVTCNIMVKAYLEHGLFE 247
V +P VV + LI G ++ + +MK N PN VT N ++ + + G F+
Sbjct: 351 VGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFD 410
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
A +LF++M E+ V P++ T NT++D R + M G
Sbjct: 411 RAHELFRQMNEEG------------VQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKG 458
Query: 308 LHFNAKRHLRMI 319
L NA + +I
Sbjct: 459 LKGNAATYTALI 470
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/402 (20%), Positives = 145/402 (36%), Gaps = 93/402 (23%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR-------------SLPKKKFKTGTLERW-- 49
PD V + ++ L + G ++ +++ M+ L FK G +R
Sbjct: 355 PDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHE 414
Query: 50 ------DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
+ ++P+++ N +++ + + A ++K +G K +A TY ++
Sbjct: 415 LFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFC 474
Query: 104 ACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVE------------ 150
N + F ++ S P+A+ Y L++ L G+ ++A V
Sbjct: 475 GVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRS 534
Query: 151 -----------------------DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
+ME G+ Y L L G A M+K+
Sbjct: 535 CYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKM 594
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-----PNLVTCNIMVKAYLE 242
K +P VV+Y +I A N+ IF +M CS PN V NI++ A
Sbjct: 595 IKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEM---CSTSKVPPNTVIYNILIDALCR 651
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ + A+ L ++M K V P+ T+N +L K+
Sbjct: 652 NNDVDRAISLMEDM------------KVKRVRPNTTTYNAILKGVRD-----------KK 688
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI 344
MLH RM+ +A R + +E+ E L+ I
Sbjct: 689 MLHKAFELMD----RMVEEACRPDYIT-MEVLTEWLSAVGEI 725
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 108/248 (43%), Gaps = 26/248 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR----SLPKKKF--------KTGTLERW--- 49
PD V Y S+ L AG + + V+ ++ SL + + K LER
Sbjct: 496 PDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYEL 555
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ ++PD + YN +++ + + A V++++ ++G +PS TYG ++
Sbjct: 556 LTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAY-- 613
Query: 105 CGKYNL---VYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
C K N+ + F S +P N + Y +L++ L R D A+S +EDM+ + + +
Sbjct: 614 CSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPN 673
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y + + + +A MD++ + A +P ++ L + G I+ +
Sbjct: 674 TTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWLSAVGEIEKLKHFVE 733
Query: 221 QMKNFCSP 228
++ P
Sbjct: 734 GYQDSSYP 741
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 85/213 (39%), Gaps = 50/213 (23%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D NA+L R + + +L +++++ +PS T+G
Sbjct: 280 DAASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFG------------------- 320
Query: 116 RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERR------GIVGSAALYYDLAR 169
+LVN L + + DEA+ + + + G+ L+ L
Sbjct: 321 ---------------ILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLID 365
Query: 170 CLCSAGKCEEAL-----MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-K 223
LC GK E+ L M+M I N+P V+Y LI +GN A +F QM +
Sbjct: 366 GLCKVGKEEDGLSLLEEMKMGNI----NRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNE 421
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
PN++T N +V +HG A++ F EM
Sbjct: 422 EGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEM 454
>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 144/332 (43%), Gaps = 40/332 (12%)
Query: 6 DTVAYRSIAVTL--------GQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDI 57
D V Y + TL G+ +++LFD E + +E DI
Sbjct: 269 DGVVYNKVTYTLLIELSVKNGKMNDVEKLFD------------------EMRERGIESDI 310
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
VY ++++ R+ + AF + +L ++G PS+ TYG +++ + G+ +
Sbjct: 311 HVYTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDGVCKVGEMGAAEILMNE 370
Query: 118 VQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
+Q K + + L+N R+G DEA + ME++G +A C +
Sbjct: 371 MQSKGVNITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGFQADVFTCNTIASCFNRLKR 430
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNI 235
+EA + ++ + + VSYT LI GN++ A +F +M + PN +T N+
Sbjct: 431 YDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNV 490
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
M+ AY + G +EA KL+ M K + PD YT+ +++ D+
Sbjct: 491 MIYAYCKQGKVKEARKLWANM------------KANGMDPDSYTYTSLIHGECIADNVDE 538
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
++ M GL N+ + MI S+AGK
Sbjct: 539 AMRLFSEMGLKGLDQNSVTYTVMISGLSKAGK 570
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 121/277 (43%), Gaps = 16/277 (5%)
Query: 57 IVVYN--AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
I VY+ V+ RR + E + ++++ +G KP A TY ++ L ++ V +
Sbjct: 203 ITVYSLTIVVEGLCRRGEVEKSKKLIKEFSGKGIKPEAYTYNTIINAYLKHRDFSGVEKI 262
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ ++K + N + Y +L+ + GK ++ ++M RGI +Y L C
Sbjct: 263 LKVMKKDGVVYNKVTYTLLIELSVKNGKMNDVEKLFDEMRERGIESDIHVYTSLISWNCR 322
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVT 232
G + A + D++ + P +Y LI G + A + N+M++ + V
Sbjct: 323 KGNIKRAFLLFDELTEKGLLPSSHTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVV 382
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ Y G+ +EA ++ M +KKG D++T NT+ KR
Sbjct: 383 FNTLINGYCRKGMIDEASMIYDVM-----------EKKGFQ-ADVFTCNTIASCFNRLKR 430
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+D+ + RM+ G+ + + +I + G VE
Sbjct: 431 YDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVE 467
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 134/298 (44%), Gaps = 15/298 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P+ YN ++NA ++ + + G +L+ +K+ G + TY L++E+ + GK N V
Sbjct: 236 IKPEAYTYNTIINAYLKHRDFSGVEKILKVMKKDGVVYNKVTYTLLIELSVKNGKMNDVE 295
Query: 113 EFFRKVQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F ++++ I + + Y L++ R+G A +++ +G++ S+ Y L +
Sbjct: 296 KLFDEMRERGIESDIHVYTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDGV 355
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C G+ A + M+++ V + LI G I A+ I++ M K ++
Sbjct: 356 CKVGEMGAAEILMNEMQSKGVNITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGFQADV 415
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
TCN + + ++EA + M E G V ++ ++D E
Sbjct: 416 FTCNTIASCFNRLKRYDEAKQWLFRMME------------GGVRLSTVSYTNLIDVYCKE 463
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPA 348
++ + ++ M + NA + MI + GKV+ W ++ +A+ + P +
Sbjct: 464 GNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGKVKEARKLWANM-KANGMDPDS 520
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 89/209 (42%), Gaps = 2/209 (0%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF-FR 116
VV+N ++N R+ + A + ++++G + T + +Y+ ++ FR
Sbjct: 381 VVFNTLINGYCRKGMIDEASMIYDVMEKKGFQADVFTCNTIASCFNRLKRYDEAKQWLFR 440
Query: 117 KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
++ + ++Y L++ +EG +EA +M + + +A Y + C GK
Sbjct: 441 MMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGK 500
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNI 235
+EA + P +YT LI + N+ A +F++M N VT +
Sbjct: 501 VKEARKLWANMKANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTV 560
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
M+ + G +EA L+ E+ I+
Sbjct: 561 MISGLSKAGKSDEAFGLYDEIKRKGYTID 589
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
+E ++P+ + YN ++ A ++ + + A + +K G P + TY ++
Sbjct: 474 VEMSSKEVQPNAITYNVMIYAYCKQGKVKEARKLWANMKANGMDPDSYTYTSLIHGECIA 533
Query: 106 GKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
+ F ++ K N++ Y V+++ L + GK+DEA ++++R+G +Y
Sbjct: 534 DNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEIKRKGYTIDNKVY 593
Query: 165 YDL 167
L
Sbjct: 594 TAL 596
>gi|255660968|gb|ACU25653.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 376
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 140/283 (49%), Gaps = 15/283 (5%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ ++ PD VVYNA+LN R + + F + + + +G + S +++ ++M + GK +
Sbjct: 18 ESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNGKVD 76
Query: 110 LVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
V + +++S ++ +++ Y +LV+ + G D+++ +E E++G V A Y +
Sbjct: 77 EVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLGAFAYSAMI 136
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CS 227
LC + A+ ++ + K KP V Y LI + + ++A +F +M CS
Sbjct: 137 NGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCS 196
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P ++T N ++ + ++ +F EA L +E+ + KGL P + T++ +++
Sbjct: 197 PTIITYNTLINGFCKNKMFGEAYNLVKELLD-----------KGLD-PGVITYSMLMEGL 244
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ + + ++ ++ G + + H +I GK+EL
Sbjct: 245 CFDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMEL 287
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 103/238 (43%), Gaps = 14/238 (5%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
Y+A++N + + A VL + + G KP+ Y ++ ++ K+ FR++
Sbjct: 132 YSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMG 191
Query: 120 KSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ P + Y L+N + EA + V+++ +G+ Y L LC K E
Sbjct: 192 TMHCSPTIITYNTLINGFCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMEGLCFDHKVE 251
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
AL +++ KP V + LI G ++ A ++ M + C+PNLV+ N ++
Sbjct: 252 RALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMELALSLYFDMNRWKCAPNLVSHNTLM 311
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
+ + + G A+ ++ + + + PDI ++N L+ + R D
Sbjct: 312 EGFYKDGDIRNALVIWARILRNG------------LEPDIISYNITLEGLCSCNRISD 357
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/137 (18%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D L+P ++ Y+ ++ + E A + Q+ +G KP + +++ + + G
Sbjct: 224 ELLDKGLDPGVITYSMLMEGLCFDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVG 283
Query: 107 KYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K L + + + PN +++ L+ +++G A+ + R G+ Y
Sbjct: 284 KMELALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343
Query: 166 DLARCLCSAGKCEEALM 182
LCS + +A++
Sbjct: 344 ITLEGLCSCNRISDAIL 360
>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 410
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/347 (22%), Positives = 150/347 (43%), Gaps = 31/347 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P AY ++ + G +KE + + ++M+ + P+++ YN ++
Sbjct: 63 PSVHAYTALLSGYAKQGLLKEAWALFEAMK---------------EKGCSPNVLTYNTLI 107
Query: 65 NACVRRK-QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SY 122
NAC +R + + +++KQ G +P+ TY ++ + ++ + ++++ +
Sbjct: 108 NACTKRAYRLPDLVGLFEEMKQAGVQPNDITYNCMVNACVCLSLFDTASQILKEMKAVNC 167
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+PN ++Y ++N+L R G+ DEAV E+M+ G ++ Y L + G+ E+A+
Sbjct: 168 LPNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMC 227
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ P + +Y +I C G A +F +M + C+P+ VT N M+ AY
Sbjct: 228 LFVGMEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYS 287
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ A L + M K+ PD++T+N +LDA + ++
Sbjct: 288 KWSRRGRARDLLKTM------------KRAGCTPDLWTYNILLDAAGKAGSASEAMQIFH 335
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPA 348
+ G N +I R G E E W + RA P A
Sbjct: 336 ELKAAGHSPNLVSFSALINMYGRLGYFEEAERAWVEM-RATGCVPNA 381
>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 140/309 (45%), Gaps = 32/309 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD V + ++ L + E ++ M ++ P++V + +
Sbjct: 146 HPDVVTFNTLLHGLCVEDRVSEALNLFHQM---------------FETTCRPNVVTFTTL 190
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK--S 121
+N R + A +L ++ + G +P+ TYG +++ M G RK+++
Sbjct: 191 MNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSH 250
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
IPN + Y ++++L ++G+ +A + +M+ +GI Y + CS+G+ +A
Sbjct: 251 IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAE 310
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
+ ++ + P VV+Y LI A + G A ++++M PN +T + M+ +
Sbjct: 311 QLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGF 370
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD-LELV 299
+ + A +F MA KG P++ TFNT++D KR DD +EL+
Sbjct: 371 CKQNRLDAAEHMFYLMA-----------TKGCS-PNLITFNTLIDGYCGAKRIDDGMELL 418
Query: 300 YKRMLHHGL 308
++ M GL
Sbjct: 419 HE-MTETGL 426
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/339 (20%), Positives = 141/339 (41%), Gaps = 40/339 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD Y S+ V +G + ++ M LER ++ PD+V YNA+
Sbjct: 287 FPDLFTYNSMIVGFCSSGRWSDAEQLLQEM------------LER---KISPDVVTYNAL 331
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV-YEFFRKVQKSY 122
+NA V+ ++ A + ++ +G P+ TY +++ + + + F+ K
Sbjct: 332 INAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGC 391
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN + + L++ + D+ + + +M G+V Y L G AL
Sbjct: 392 SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALD 451
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK------------NFCSPNL 230
+ ++ P +V+ L+ D+G +++A +F M+ N P++
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDV 511
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T NI++ + G F EA +L++EM ++PD T+++M+D +
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRG------------IVPDTITYSSMIDGLCKQ 559
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
R D+ ++ M N +I +AG+V+
Sbjct: 560 SRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 122/271 (45%), Gaps = 23/271 (8%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNL 110
DI + ++ + A ++ + G P T+ GL +E ++ NL
Sbjct: 113 DIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVS-EALNL 171
Query: 111 VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
++ F + PN + + L+N L REG+ EAV+ ++ M G+ + Y +
Sbjct: 172 FHQMFETTCR---PNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDG 228
Query: 171 LCSAGKCEEALMQMDKICKVANK-PLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSP 228
+C G AL + K+ +V++ P VV Y+ +I + G +A +F +M+ P
Sbjct: 229 MCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFP 288
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
+L T N M+ + G + +A +L QEM E + PD+ T+N +++A
Sbjct: 289 DLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK------------ISPDVVTYNALINAFV 336
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
E ++ + E +Y ML G+ N + MI
Sbjct: 337 KEGKFFEAEELYDEMLPRGIIPNTITYSSMI 367
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/363 (17%), Positives = 152/363 (41%), Gaps = 61/363 (16%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR--SLPKKKFKTGTL-----ERWD------- 50
P+ V + ++ L + G I E ++D M L + GT+ ++ D
Sbjct: 182 PNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNL 241
Query: 51 -------PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
+ P++V+Y+A++++ + + A + +++++G P TY ++
Sbjct: 242 LRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFC 301
Query: 104 ACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+ G+++ + ++ +++ P+ + Y L+N +EGK EA ++M RGI+ +
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTI 361
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y + C + + A + P ++++ LI + I + + ++M
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421
Query: 223 -------------------------------------KNFCSPNLVTCNIMVKAYLEHGL 245
C P++VTC+ ++ ++G
Sbjct: 422 TETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLC-PDIVTCDTLLDGLCDNGK 480
Query: 246 FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
++A+++F+ M + ++ + G V PD+ T+N ++ E ++ + E +Y+ M H
Sbjct: 481 LKDALEMFKVMQKSKKDLDASHPFNG-VEPDVQTYNILISGLINEGKFLEAEELYEEMPH 539
Query: 306 HGL 308
G+
Sbjct: 540 RGI 542
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 100/251 (39%), Gaps = 25/251 (9%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + L D YN +++ A +LQ++ G P T +++ + G
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNG 479
Query: 107 KYNLVYEFFRKVQKS------------YIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
K E F+ +QKS P+ Y +L++ L EGK EA E+M
Sbjct: 480 KLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH 539
Query: 155 RGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQN 214
RGIV Y + LC + +EA D + + P VV++T LI +G + +
Sbjct: 540 RGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDD 599
Query: 215 AAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV 273
+F +M + N +T ++ + + G A+ +FQEM V
Sbjct: 600 GLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSG------------V 647
Query: 274 IPDIYTFNTML 284
PD T ML
Sbjct: 648 YPDTITIRNML 658
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 109/257 (42%), Gaps = 29/257 (11%)
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P+ + + L+ + R + D +S + MER+ I + L +C CS K AL
Sbjct: 76 LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALS 135
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
KI K+ P VV++ L+ + A +F+QM + C PN+VT ++
Sbjct: 136 TFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLC 195
Query: 242 EHGLFEEAMKLFQEMAED------------------------SNHINREYDKKGLVIPDI 277
G EA+ L M ED + ++ R+ ++ +IP++
Sbjct: 196 REGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNV 255
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEI 333
++ ++D+ + R D + ++ M G+ + + MI+ +G+ +LL+
Sbjct: 256 VIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQE 315
Query: 334 TWEHLARADRITPPALI 350
E D +T ALI
Sbjct: 316 MLERKISPDVVTYNALI 332
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 77/166 (46%), Gaps = 9/166 (5%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDP--RLEPDIVVYNA 62
PD V ++ L G +K+ ++ M+ K L+ P +EPD+ YN
Sbjct: 463 PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKD------LDASHPFNGVEPDVQTYNI 516
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKS 121
+++ + ++ A + +++ +G P TY +++ + + + + F + KS
Sbjct: 517 LISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKS 576
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ PN + + L+N + G+ D+ + +M RRGIV +A Y L
Sbjct: 577 FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITL 622
>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 445
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 136/307 (44%), Gaps = 26/307 (8%)
Query: 46 LERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
++++P + PD+ + ++N AF V + ++G P+A T +++ +
Sbjct: 84 FKQFEPNGITPDLCTLSILINCFCHLTHITFAFSVFANILKRGYHPNAITLNTLIKGLCF 143
Query: 105 CGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
CG+ F KV + + + ++Y L+N L + G+T + +E + +
Sbjct: 144 CGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVM 203
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + CLC +A ++ P V +YT LI GN++ A + N+MK
Sbjct: 204 YTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMK 263
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS------------------NHIN 264
+P++ T NI++ A + G +EAM LF+EM + +H+
Sbjct: 264 LKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLE 323
Query: 265 REYD-----KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
R K+ + P++Y++ +LDA R ++ + ++ +L G H N + + MI
Sbjct: 324 RAIALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMI 383
Query: 320 LDASRAG 326
+AG
Sbjct: 384 NGLCKAG 390
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 134/306 (43%), Gaps = 31/306 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V+Y ++ L +AG K V +R L K PD+V+Y +++
Sbjct: 165 DQVSYGTLINGLCKAGETKA---VARLLRKLEGHSVK------------PDLVMYTTIIH 209
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIP 124
+ K A + ++ +G P+ TY ++ G + +++ K+ P
Sbjct: 210 CLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINP 269
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ + +L++ L +EGK DEA+S E+M+ + + + Y L LC E A+
Sbjct: 270 DVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALC 329
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLE 242
K+ + +P V SYT L+ A G ++NA F + K + N+ T N+M+ +
Sbjct: 330 KKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLLVKGY-HLNVRTYNVMINGLCK 388
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
GLF + M L +M + KG +P+ TF T++ A + D E +
Sbjct: 389 AGLFGDVMDLKSKM-----------EGKG-CMPNAITFKTIICALLEKDENDKAEKFLRE 436
Query: 303 MLHHGL 308
M+ GL
Sbjct: 437 MIARGL 442
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 118/270 (43%), Gaps = 14/270 (5%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R P ++N +L++ V+ K++ + +Q + G P T +++
Sbjct: 56 RPPPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHLTHITFA 115
Query: 112 YEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ F + ++ Y PNA+ L+ L G+ A+ + + +G Y L
Sbjct: 116 FSVFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLING 175
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
LC AG+ + + K+ + KP +V YT +I + + +A ++++M SPN
Sbjct: 176 LCKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPN 235
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+ T ++ + G +EA L EM +IN PD+YTFN ++DA A
Sbjct: 236 VFTYTTLIHGFCIMGNLKEAFSLLNEM--KLKNIN----------PDVYTFNILIDALAK 283
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
E + D+ +++ M H + N + +I
Sbjct: 284 EGKIDEAMSLFEEMKHKNMFPNIVTYTSLI 313
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 71/156 (45%), Gaps = 16/156 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ V Y S+ L + H++ + M+ + ++P++ Y +
Sbjct: 303 FPNIVTYTSLIDGLCKNHHLERAIALCKKMK---------------EQGIQPNVYSYTIL 347
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSY 122
L+A + + E A Q L +G + TY +++ + G + V + K++ K
Sbjct: 348 LDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGC 407
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+PNA+ +K ++ L + + D+A + +M RG++
Sbjct: 408 MPNAITFKTIICALLEKDENDKAEKFLREMIARGLL 443
>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
Length = 582
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 87/362 (24%), Positives = 158/362 (43%), Gaps = 32/362 (8%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD V Y + L + G D+++ M +E+ + EP V YN +
Sbjct: 170 HPDVVTYTGLIDGLCKDGRATHAMDLLNLM------------VEKGE---EPSNVTYNVL 214
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV---QK 120
L+ + AF +L+ + ++G+K TY +M+ + GK + + F + +
Sbjct: 215 LSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNEN 274
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
PN + +L+ L +EG+ +AV M ++G G+ Y L AGK +EA
Sbjct: 275 CLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEA 334
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
+ ++ + P +Y+ LI + A +F +M+ +P L N ++ +
Sbjct: 335 MELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMAS 394
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ G E+A LFQEM + N E PDI +FNTM+D + ++ +
Sbjct: 395 LCKEGSLEQAKSLFQEMG----NANCE--------PDIISFNTMIDGTLKAGDFQFVKEL 442
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLE 359
+M+ GL +A +I S+ G+++ + E + A TP AL+ + L
Sbjct: 443 QMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMV-ASGFTPDALVYDSLLKGLS 501
Query: 360 NK 361
+K
Sbjct: 502 SK 503
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 136/319 (42%), Gaps = 27/319 (8%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + PDIV YN ++N + K+ + A +L +++ G P++ T +M+ + G
Sbjct: 23 EMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDG 82
Query: 107 KYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ + E + +K + + + Y L++ G D ++M +GI + Y
Sbjct: 83 RMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYS 142
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KN 224
L LC G+ +EA ++ + + P VV+YTGLI G +A + N M +
Sbjct: 143 CLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEK 202
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNH---------------------- 262
P+ VT N+++ + GL +A K+ + M E
Sbjct: 203 GEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEA 262
Query: 263 ---INREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
N +D + + P+++TFN ++ E R ++++M+ G N + ++
Sbjct: 263 LKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLL 322
Query: 320 LDASRAGKVELLEITWEHL 338
+AGK++ W+ +
Sbjct: 323 GGCLKAGKIKEAMELWKQV 341
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/313 (20%), Positives = 136/313 (43%), Gaps = 31/313 (9%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P++V ++ L + G + E +++++M+ KK F + D+V+Y +
Sbjct: 65 FPNSVTCTTLMDGLCKDGRMDEAMELLEAMK---KKGF------------DADVVLYGTL 109
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
++ + + ++ +G + TY ++ + G++ + + I
Sbjct: 110 ISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGI 169
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ + Y L++ L ++G+ A+ + M +G S Y L LC G +A
Sbjct: 170 HPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFK 229
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM---KNFCSPNLVTCNIMVKA 239
+ + + K VV+Y L++ D G + A +FN M +N PN+ T N+++
Sbjct: 230 ILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGG 289
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ G +A+K I+R+ KKG ++ T+N +L C + + +
Sbjct: 290 LCKEGRLTKAVK-----------IHRKMVKKG-SCGNLVTYNMLLGGCLKAGKIKEAMEL 337
Query: 300 YKRMLHHGLHFNA 312
+K++L G N+
Sbjct: 338 WKQVLDLGFVPNS 350
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P + YN ++ + + E A + Q++ +P ++ +++ L G + V
Sbjct: 381 LNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVK 440
Query: 113 EF-FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E + V+ P+AL + L+N L + G+ DEA SA+E M G A +Y L + L
Sbjct: 441 ELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGL 500
Query: 172 CSAGKCEEAL 181
S G E +
Sbjct: 501 SSKGDTTEII 510
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 5/154 (3%)
Query: 26 LFDVIDSMRSLPKK----KFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQ 81
LFD M SL K+ + K+ E + EPDI+ +N +++ ++ ++ +
Sbjct: 385 LFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQM 444
Query: 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREG 140
++ + G +P A T+ ++ + G+ + R V + P+AL Y L+ L +G
Sbjct: 445 KMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKG 504
Query: 141 KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
T E ++ + M +G V + + CLC +
Sbjct: 505 DTTEIINLLHQMAAKGTVLDRKIVSTILTCLCHS 538
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 100/266 (37%), Gaps = 71/266 (26%)
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL--------- 181
+++ L R G EA+ + +M R+ + Y L LC A K +EA+
Sbjct: 3 IVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAA 62
Query: 182 ----------MQMDKICK-------------VANKPL---VVSYTGLIQACLDSGNIQNA 215
MD +CK + K VV Y LI ++GN+
Sbjct: 63 GCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRG 122
Query: 216 AYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI 274
+F++M S N+VT + +V G ++EA + MAE H
Sbjct: 123 KELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIH------------ 170
Query: 275 PDIYTFNTMLDACAAEKR----WDDLELVYKR---------------MLHHGLHFNAKRH 315
PD+ T+ ++D + R D L L+ ++ + GL +A +
Sbjct: 171 PDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKI 230
Query: 316 LRMILDASRAGKVELLEITWEHLARA 341
LRM+++ + V +T+ L +
Sbjct: 231 LRMMIEKGKKADV----VTYNTLMKG 252
>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 140/309 (45%), Gaps = 32/309 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD V + ++ L + E ++ M ++ P++V + +
Sbjct: 146 HPDVVTFNTLLHGLCVEDRVSEALNLFHQM---------------FETTCRPNVVTFTTL 190
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK--S 121
+N R + A +L ++ + G +P+ TYG +++ M G RK+++
Sbjct: 191 MNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSH 250
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
IPN + Y ++++L ++G+ +A + +M+ +GI Y + CS+G+ +A
Sbjct: 251 IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAE 310
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
+ ++ + P VV+Y LI A + G A ++++M PN +T + M+ +
Sbjct: 311 QLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGF 370
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD-LELV 299
+ + A +F MA KG P++ TFNT++D KR DD +EL+
Sbjct: 371 CKQNRLDAAEHMFYLMA-----------TKGCS-PNLITFNTLIDGYCGAKRIDDGMELL 418
Query: 300 YKRMLHHGL 308
++ M GL
Sbjct: 419 HE-MTETGL 426
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/339 (20%), Positives = 141/339 (41%), Gaps = 40/339 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD Y S+ V +G + ++ M LER ++ PD+V YNA+
Sbjct: 287 FPDLFTYNSMIVGFCSSGRWSDAEQLLQEM------------LER---KISPDVVTYNAL 331
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV-YEFFRKVQKSY 122
+NA V+ ++ A + ++ +G P+ TY +++ + + + F+ K
Sbjct: 332 INAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGC 391
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN + + L++ + D+ + + +M G+V Y L G AL
Sbjct: 392 SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALD 451
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK------------NFCSPNL 230
+ ++ P +V+ L+ D+G +++A +F M+ N P++
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDV 511
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T NI++ + G F EA +L++EM ++PD T+++M+D +
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRG------------IVPDTITYSSMIDGLCKQ 559
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
R D+ ++ M N +I +AG+V+
Sbjct: 560 SRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 122/271 (45%), Gaps = 23/271 (8%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNL 110
DI + ++ + A +L + G P T+ GL +E ++ NL
Sbjct: 113 DIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVS-EALNL 171
Query: 111 VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
++ F + PN + + L+N L REG+ EAV+ ++ M G+ + Y +
Sbjct: 172 FHQMFETTCR---PNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDG 228
Query: 171 LCSAGKCEEALMQMDKICKVANK-PLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSP 228
+C G AL + K+ +V++ P VV Y+ +I + G +A +F +M+ P
Sbjct: 229 MCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFP 288
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
+L T N M+ + G + +A +L QEM E + PD+ T+N +++A
Sbjct: 289 DLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK------------ISPDVVTYNALINAFV 336
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
E ++ + E +Y ML G+ N + MI
Sbjct: 337 KEGKFFEAEELYDEMLPRGIIPNTITYSSMI 367
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/363 (17%), Positives = 152/363 (41%), Gaps = 61/363 (16%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR--SLPKKKFKTGTL-----ERWD------- 50
P+ V + ++ L + G I E ++D M L + GT+ ++ D
Sbjct: 182 PNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNL 241
Query: 51 -------PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
+ P++V+Y+A++++ + + A + +++++G P TY ++
Sbjct: 242 LRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFC 301
Query: 104 ACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+ G+++ + +++ + I P+ + Y L+N +EGK EA ++M RGI+ +
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTI 361
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y + C + + A + P ++++ LI + I + + ++M
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421
Query: 223 -------------------------------------KNFCSPNLVTCNIMVKAYLEHGL 245
C P++VTC+ ++ ++G
Sbjct: 422 TETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLC-PDIVTCDTLLDGLCDNGK 480
Query: 246 FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
++A+++F+ M + ++ + G V PD+ T+N ++ E ++ + E +Y+ M H
Sbjct: 481 LKDALEMFKVMQKSKKDLDASHPFNG-VEPDVQTYNILISGLINEGKFLEAEELYEEMPH 539
Query: 306 HGL 308
G+
Sbjct: 540 RGI 542
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 100/251 (39%), Gaps = 25/251 (9%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + L D YN +++ A +LQ++ G P T +++ + G
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNG 479
Query: 107 KYNLVYEFFRKVQKS------------YIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
K E F+ +QKS P+ Y +L++ L EGK EA E+M
Sbjct: 480 KLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH 539
Query: 155 RGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQN 214
RGIV Y + LC + +EA D + + P VV++T LI +G + +
Sbjct: 540 RGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDD 599
Query: 215 AAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV 273
+F +M + N +T ++ + + G A+ +FQEM V
Sbjct: 600 GLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSG------------V 647
Query: 274 IPDIYTFNTML 284
PD T ML
Sbjct: 648 YPDTITIRNML 658
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 29/257 (11%)
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P+ + + L+ + R + D +S + MER+ I + L +C CS K AL
Sbjct: 76 LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALS 135
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
K+ K+ P VV++ L+ + A +F+QM + C PN+VT ++
Sbjct: 136 TFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLC 195
Query: 242 EHGLFEEAMKLFQEMAED------------------------SNHINREYDKKGLVIPDI 277
G EA+ L M ED + ++ R+ ++ +IP++
Sbjct: 196 REGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNV 255
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEI 333
++ ++D+ + R D + ++ M G+ + + MI+ +G+ +LL+
Sbjct: 256 VIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQE 315
Query: 334 TWEHLARADRITPPALI 350
E D +T ALI
Sbjct: 316 MLERKISPDVVTYNALI 332
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 77/166 (46%), Gaps = 9/166 (5%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDP--RLEPDIVVYNA 62
PD V ++ L G +K+ ++ M+ K L+ P +EPD+ YN
Sbjct: 463 PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKD------LDASHPFNGVEPDVQTYNI 516
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKS 121
+++ + ++ A + +++ +G P TY +++ + + + + F + KS
Sbjct: 517 LISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKS 576
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ PN + + L+N + G+ D+ + +M RRGIV +A Y L
Sbjct: 577 FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITL 622
>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 140/309 (45%), Gaps = 32/309 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD V + ++ L + E ++ M ++ P++V + +
Sbjct: 146 HPDVVTFTTLLHGLCVEDRVSEALNLFHQM---------------FETTCRPNVVTFTTL 190
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK--S 121
+N R + A +L ++ + G +P+ TYG +++ M G RK+++
Sbjct: 191 MNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSH 250
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
IPN + Y ++++L ++G+ +A + +M+ +GI Y + CS+G+ +A
Sbjct: 251 IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAE 310
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
+ ++ + P VV+Y LI A + G A ++++M PN +T + M+ +
Sbjct: 311 QLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGF 370
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD-LELV 299
+ + A +F MA KG P++ TFNT++D KR DD +EL+
Sbjct: 371 CKQNRLDAAEHMFYLMA-----------TKGCS-PNLITFNTLIDGYCGAKRIDDGMELL 418
Query: 300 YKRMLHHGL 308
++ M GL
Sbjct: 419 HE-MTETGL 426
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/339 (20%), Positives = 141/339 (41%), Gaps = 40/339 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD Y S+ V +G + ++ M LER ++ PD+V YNA+
Sbjct: 287 FPDLFTYNSMIVGFCSSGRWSDAEQLLQEM------------LER---KISPDVVTYNAL 331
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV-YEFFRKVQKSY 122
+NA V+ ++ A + ++ +G P+ TY +++ + + + F+ K
Sbjct: 332 INAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGC 391
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN + + L++ + D+ + + +M G+V Y L G AL
Sbjct: 392 SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALD 451
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK------------NFCSPNL 230
+ ++ P +V+ L+ D+G +++A +F M+ N P++
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDV 511
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T NI++ + G F EA +L++EM ++PD T+++M+D +
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRG------------IVPDTITYSSMIDGLCKQ 559
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
R D+ ++ M N +I +AG+V+
Sbjct: 560 SRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 123/271 (45%), Gaps = 23/271 (8%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNL 110
DI +N ++ + A ++ + G P T+ GL +E ++ NL
Sbjct: 113 DIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVS-EALNL 171
Query: 111 VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
++ F + PN + + L+N L REG+ EAV+ ++ M G+ + Y +
Sbjct: 172 FHQMFETTCR---PNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDG 228
Query: 171 LCSAGKCEEALMQMDKICKVANK-PLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSP 228
+C G AL + K+ +V++ P VV Y+ +I + G +A +F +M+ P
Sbjct: 229 MCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFP 288
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
+L T N M+ + G + +A +L QEM E + PD+ T+N +++A
Sbjct: 289 DLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK------------ISPDVVTYNALINAFV 336
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
E ++ + E +Y ML G+ N + MI
Sbjct: 337 KEGKFFEAEELYDEMLPRGIIPNTITYSSMI 367
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/363 (17%), Positives = 152/363 (41%), Gaps = 61/363 (16%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR--SLPKKKFKTGTL-----ERWD------- 50
P+ V + ++ L + G I E ++D M L + GT+ ++ D
Sbjct: 182 PNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNL 241
Query: 51 -------PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
+ P++V+Y+A++++ + + A + +++++G P TY ++
Sbjct: 242 LRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFC 301
Query: 104 ACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+ G+++ + ++ +++ P+ + Y L+N +EGK EA ++M RGI+ +
Sbjct: 302 SSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTI 361
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y + C + + A + P ++++ LI + I + + ++M
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421
Query: 223 -------------------------------------KNFCSPNLVTCNIMVKAYLEHGL 245
C P++VTC+ ++ ++G
Sbjct: 422 TETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLC-PDIVTCDTLLDGLCDNGK 480
Query: 246 FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
++A+++F+ M + ++ + G V PD+ T+N ++ E ++ + E +Y+ M H
Sbjct: 481 LKDALEMFKVMQKSKKDLDASHPFNG-VEPDVQTYNILISGLINEGKFLEAEELYEEMPH 539
Query: 306 HGL 308
G+
Sbjct: 540 RGI 542
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 100/251 (39%), Gaps = 25/251 (9%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + L D YN +++ A +LQ++ G P T +++ + G
Sbjct: 420 EMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNG 479
Query: 107 KYNLVYEFFRKVQKS------------YIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
K E F+ +QKS P+ Y +L++ L EGK EA E+M
Sbjct: 480 KLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH 539
Query: 155 RGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQN 214
RGIV Y + LC + +EA D + + P VV++T LI +G + +
Sbjct: 540 RGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDD 599
Query: 215 AAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV 273
+F +M + N +T ++ + + G A+ +FQEM V
Sbjct: 600 GLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSG------------V 647
Query: 274 IPDIYTFNTML 284
PD T ML
Sbjct: 648 YPDTITIRNML 658
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 110/257 (42%), Gaps = 29/257 (11%)
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P+ + + L+ + R + D +S + MER+ I + L +C CS K AL
Sbjct: 76 LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALS 135
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
KI K+ P VV++T L+ + A +F+QM + C PN+VT ++
Sbjct: 136 TFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLC 195
Query: 242 EHGLFEEAMKLFQEMAED------------------------SNHINREYDKKGLVIPDI 277
G EA+ L M ED + ++ R+ ++ +IP++
Sbjct: 196 REGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNV 255
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEI 333
++ ++D+ + R D + ++ M G+ + + MI+ +G+ +LL+
Sbjct: 256 VIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQE 315
Query: 334 TWEHLARADRITPPALI 350
E D +T ALI
Sbjct: 316 MLERKISPDVVTYNALI 332
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 77/166 (46%), Gaps = 9/166 (5%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDP--RLEPDIVVYNA 62
PD V ++ L G +K+ ++ M+ K L+ P +EPD+ YN
Sbjct: 463 PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKD------LDASHPFNGVEPDVQTYNI 516
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKS 121
+++ + ++ A + +++ +G P TY +++ + + + + F + KS
Sbjct: 517 LISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKS 576
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ PN + + L+N + G+ D+ + +M RRGIV +A Y L
Sbjct: 577 FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITL 622
>gi|357123530|ref|XP_003563463.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Brachypodium distachyon]
Length = 862
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 134/320 (41%), Gaps = 30/320 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT +YR I +AG + + ++ M D PD Y ++
Sbjct: 278 PDTASYRHIVDAFARAGDLSRVAELFREMA---------------DTGHTPDPSAYLGLM 322
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
A R A VL+Q++ G P+A TY +++++ G+++ V E FR+++ + P
Sbjct: 323 EAHTRVGATAEAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRELFREMRTAVPP 382
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ Y VL + G E V DM R GI + G E+A +
Sbjct: 383 DTATYNVLFSVFGDGGFFKEVVELFHDMLRTGIEPDMETCEGVLVACGQGGLHEDAREVL 442
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEH 243
D I K P +YTGL++A + + A FN M S P + T N + + +
Sbjct: 443 DYITKEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNSLANVFAKG 502
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
GLF+EA +F M +S I + D +F+ +++A + DD Y M
Sbjct: 503 GLFQEAESIFSRMT-NSAGIQKNKD----------SFDALIEAYCQGAQLDDAVKAYMEM 551
Query: 304 LHHGLHFNA-KRHLRMILDA 322
FN +R L +L+A
Sbjct: 552 RKS--RFNPDERSLEGVLNA 569
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 112/259 (43%), Gaps = 15/259 (5%)
Query: 51 PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
P + PD+ YN +L A R + A +L+ + + G P +Y +++ G +
Sbjct: 239 PAVRPDLTTYNTLLAAAAVRSLNDQAEMLLRAMLEAGVLPDTASYRHIVDAFARAGDLSR 298
Query: 111 VYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
V E FR++ + + P+ AY L+ R G T EAV+ + M+ G +AA Y L
Sbjct: 299 VAELFREMADTGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQADGCAPTAATYRVLLD 358
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSP 228
G+ + + ++ + + A P +Y L D G + +F+ M + P
Sbjct: 359 LYGRQGRF-DGVRELFREMRTAVPPDTATYNVLFSVFGDGGFFKEVVELFHDMLRTGIEP 417
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
++ TC ++ A + GL E+A ++ +Y K ++P + +++A
Sbjct: 418 DMETCEGVLVACGQGGLHEDAREVL------------DYITKEGMVPTAKAYTGLVEALG 465
Query: 289 AEKRWDDLELVYKRMLHHG 307
+++ + + M G
Sbjct: 466 HAAMYEEAYVAFNMMTEIG 484
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 98/261 (37%), Gaps = 28/261 (10%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK-----------Y 108
Y +++ A R E A +L Q+K G P+A TY V+ AC +
Sbjct: 171 YTSLIAAYARNALHEEARALLDQMKAAGVAPTAATYNTVLA---ACARATDPPVPFDMLL 227
Query: 109 NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
L E V + P+ Y L+ D+A + M G++ A Y +
Sbjct: 228 GLFAEMRHDVSPAVRPDLTTYNTLLAAAAVRSLNDQAEMLLRAMLEAGVLPDTASYRHIV 287
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCS 227
AG ++ + P +Y GL++A G A + QM+ + C+
Sbjct: 288 DAFARAGDLSRVAELFREMADTGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQADGCA 347
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P T +++ Y G F+ +LF+EM + V PD T+N +
Sbjct: 348 PTAATYRVLLDLYGRQGRFDGVRELFREM-------------RTAVPPDTATYNVLFSVF 394
Query: 288 AAEKRWDDLELVYKRMLHHGL 308
+ ++ ++ ML G+
Sbjct: 395 GDGGFFKEVVELFHDMLRTGI 415
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 21/176 (11%)
Query: 184 MDKICKV-----ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
+DK +V A+ +SYT LI A + + A + +QMK +P T N ++
Sbjct: 151 LDKCLEVFHDLPADSRTALSYTSLIAAYARNALHEEARALLDQMKAAGVAPTAATYNTVL 210
Query: 238 KAYLEHG----LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
A F+ + LF EM +D V PD+ T+NT+L A A
Sbjct: 211 AACARATDPPVPFDMLLGLFAEM---------RHDVSPAVRPDLTTYNTLLAAAAVRSLN 261
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDA-SRAGKVELLEITWEHLARADRITPPA 348
D E++ + ML G+ + + R I+DA +RAG + + + +A P+
Sbjct: 262 DQAEMLLRAMLEAGVLPDTASY-RHIVDAFARAGDLSRVAELFREMADTGHTPDPS 316
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/257 (19%), Positives = 88/257 (34%), Gaps = 52/257 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT Y + G G KE+ ++ M +TG +EPD+ VL
Sbjct: 382 PDTATYNVLFSVFGDGGFFKEVVELFHDM-------LRTG--------IEPDMETCEGVL 426
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
AC + E A VL + ++G P+A Y ++E + Y Y F + + +
Sbjct: 427 VACGQGGLHEDAREVLDYITKEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSL 486
Query: 124 PNALAYKVLVNTLWREG------------------------------------KTDEAVS 147
P Y L N + G + D+AV
Sbjct: 487 PTIETYNSLANVFAKGGLFQEAESIFSRMTNSAGIQKNKDSFDALIEAYCQGAQLDDAVK 546
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
A +M + + C AG +E+ Q ++I P +++Y ++
Sbjct: 547 AYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEEIQSNMAVPSIIAYCMMLSLYA 606
Query: 208 DSGNIQNAAYIFNQMKN 224
+ +A + +MK
Sbjct: 607 RNDRWADAYDLLEEMKT 623
>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
Length = 782
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 138/320 (43%), Gaps = 43/320 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD YR++ G + E+ ++D M + G ++PD V+N ++
Sbjct: 339 PDIATYRTLLQGYATKGALVEMHALLDLM-------VRNG--------IQPDHHVFNILI 383
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
A ++++ + A V +++Q G P+ YG V++V+ G + +F + + +
Sbjct: 384 CAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLT 443
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L++ L K D+A + +M RGI + + + C G+ E+
Sbjct: 444 PNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKL 503
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
D + ++ KP +++Y LI C +G + A + M + P++VT ++ Y
Sbjct: 504 FDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCR 563
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD--------ACAAE---- 290
++A+ LF+EM V P+I T+N +L A A E
Sbjct: 564 VSRMDDALALFKEMVSSG------------VSPNIITYNIILQGLFHTRRTAAAKELYVS 611
Query: 291 --KRWDDLELVYKRMLHHGL 308
K LEL ++ HGL
Sbjct: 612 ITKSGTQLELSTYNIILHGL 631
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 143/333 (42%), Gaps = 48/333 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y SI L +A + + +V+++M K G + PD + YN++L
Sbjct: 234 PDVVTYSSIIAALCKAQAMDKAMEVLNTM-------VKNGVM--------PDCMTYNSIL 278
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ Q + A L++++ G +P+ TY +M + G+ + F + K +
Sbjct: 279 HGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLE 338
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y+ L+ +G E + ++ M R GI ++ L K ++A++
Sbjct: 339 PDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLV 398
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
K+ + P VV Y +I SG++ +A F QM + +T NI+V L H
Sbjct: 399 FSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMID----EGLTPNIIVYTSLIH 454
Query: 244 GL-----FEEAMKLFQEMAEDS--------NHINREYDKKGLVI---------------P 275
GL +++A +L EM + N I + K+G VI P
Sbjct: 455 GLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKP 514
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
DI T+NT++D C + D+ + M+ G+
Sbjct: 515 DIITYNTLIDGCCLAGKMDEATKLLASMVSVGV 547
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 110/259 (42%), Gaps = 14/259 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V YN VLN + + A+ ++ +G P TY ++ + + E
Sbjct: 199 PDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEV 258
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
V+ +P+ + Y +++ G+ EA+ ++ M G+ + Y L LC
Sbjct: 259 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCK 318
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+ EA D + K +P + +Y L+Q G + + + M +N P+
Sbjct: 319 NGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHV 378
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
NI++ AY + ++AM +F +M + + P++ + T++D
Sbjct: 379 FNILICAYAKQEKVDQAMLVFSKMRQHGLN------------PNVVCYGTVIDVLCKSGS 426
Query: 293 WDDLELVYKRMLHHGLHFN 311
DD L +++M+ GL N
Sbjct: 427 VDDAMLYFEQMIDEGLTPN 445
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 133/310 (42%), Gaps = 18/310 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D + PD+V Y++++ A + + + A VL + + G P TY ++ + G
Sbjct: 226 EMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSG 285
Query: 107 KYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ +K++ + PN + Y L+N L + G++ EA + M +RG+ A Y
Sbjct: 286 QPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYR 345
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
L + + G E +D + + +P + LI A + A +F++M+
Sbjct: 346 TLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQH 405
Query: 226 -CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
+PN+V ++ + G ++AM F++M ++ + P+I + +++
Sbjct: 406 GLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEG------------LTPNIIVYTSLI 453
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLAR 340
+WD E + ML G+ N +I + G+V +L ++ +
Sbjct: 454 HGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVK 513
Query: 341 ADRITPPALI 350
D IT LI
Sbjct: 514 PDIITYNTLI 523
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/324 (20%), Positives = 142/324 (43%), Gaps = 30/324 (9%)
Query: 56 DIVVYNAVLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
D + + +L C ++ + VL+++ + G P +Y +++ + + E
Sbjct: 126 DAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALEL 185
Query: 115 FRKVQK----SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ P+ ++Y ++N ++EG +D+A S +M RGI+ Y +
Sbjct: 186 LHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAA 245
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
LC A ++A+ ++ + K P ++Y ++ SG + A +M+ + PN
Sbjct: 246 LCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPN 305
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKGLVI------- 274
+VT + ++ ++G EA K+F M + + + Y KG ++
Sbjct: 306 VVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLD 365
Query: 275 --------PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
PD + FN ++ A A +++ D LV+ +M HGL+ N + +I ++G
Sbjct: 366 LMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSG 425
Query: 327 KVELLEITWEHLARADRITPPALI 350
V+ + +E + + +TP ++
Sbjct: 426 SVDDAMLYFEQMID-EGLTPNIIV 448
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 121/297 (40%), Gaps = 37/297 (12%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PDI+ YN +++ C + + A +L + G KP TYG ++ + +
Sbjct: 512 VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDAL 571
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F+++ S + PN + Y +++ L+ +T A + + G + Y + L
Sbjct: 572 ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGL 631
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQMKNFCSPNL 230
C +EAL +C + ++ +I A L G + A +F N P++
Sbjct: 632 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDV 691
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T ++M + +E G EE LF M E + C+A+
Sbjct: 692 RTYSLMAENLIEQGSLEELDDLFLSMEE--------------------------NGCSAD 725
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMI------LDASRAG-KVELLEITWEHLAR 340
R L + +++L G A +L MI L+AS A +E I WE ++R
Sbjct: 726 SRM--LNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLLESSPIVWEQISR 780
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 14/169 (8%)
Query: 145 AVSAVEDMERRG---IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
AVS M R G + + Y L C C AG+ + + + K + +++T
Sbjct: 73 AVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTP 132
Query: 202 LIQA-CLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
L++ C D + +M C P++ + N ++K + +EA++L MA+
Sbjct: 133 LLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMAD- 191
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
D+ G PD+ ++NT+L+ E D Y ML G+
Sbjct: 192 --------DRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGI 232
>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
Length = 851
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 132/306 (43%), Gaps = 18/306 (5%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R+ P++ YN ++ + + ++++ G P+ TY +++ G+ +
Sbjct: 5 RVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEA 64
Query: 112 YEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ + + K PN ++Y V++N L REG EA +E+M +G Y L
Sbjct: 65 FGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNG 124
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
C G +AL+ ++ + P VV+YT LI + + N+ A F+QM+ PN
Sbjct: 125 YCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPN 184
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
T ++ + GL EA ++ EM E P + T+N +
Sbjct: 185 ERTYTTLIDGFSRQGLLNEAYRILNEMTESG------------FSPSVVTYNAFIHGHCV 232
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE-LLEITWEHLARA---DRIT 345
+R ++ V + M+ GL + + +I R G+++ ++ E + + D +T
Sbjct: 233 LERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVT 292
Query: 346 PPALIK 351
+LI+
Sbjct: 293 YSSLIQ 298
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 89/364 (24%), Positives = 157/364 (43%), Gaps = 37/364 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ ++Y I L + G +KE +++++ M +K T PD V YN +L
Sbjct: 78 PNLISYNVIINGLCREGSMKEAWEILEEM------GYKGFT---------PDEVTYNTLL 122
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
N + + A + ++ + G PS TY ++ M N EFF +++ +
Sbjct: 123 NGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLR 182
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y L++ R+G +EA + +M G S Y C + EEAL
Sbjct: 183 PNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGV 242
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ ++ + P VVSY+ +I G + A + +M + SP+ VT + +++ E
Sbjct: 243 VQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCE 302
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
EA L QEM + GL PD +T+ T+++A E + ++
Sbjct: 303 MRRLTEACDLSQEMLD-----------MGLP-PDEFTYTTLINAYCVEGDLNKALHLHDE 350
Query: 303 MLHHGLHFNAKRHLRMILD-----ASRAGKVELLEITWEHLARADRITPPALIKERFCNR 357
M+H G +A + +I +R K L ++ +E +D +T LI+ C+
Sbjct: 351 MIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSD-VTYDTLIEN--CSN 407
Query: 358 LENK 361
+E K
Sbjct: 408 IEFK 411
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 101/261 (38%), Gaps = 32/261 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y +I + G + F + M + + PD V Y++++
Sbjct: 253 PDVVSYSTIISGFCRKGELDRAFQMKQEM---------------VEKGVSPDAVTYSSLI 297
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
++ A + Q++ G P TY ++ G N + + K ++
Sbjct: 298 QGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFL 357
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY---------------YDLA 168
P+A+ Y VL+N L ++ +T EA + + V S Y L
Sbjct: 358 PDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALI 417
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
+ C G EA + + + +KP Y +I GN+ A ++ +M +
Sbjct: 418 KGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFV 477
Query: 228 PNLVTCNIMVKAYLEHGLFEE 248
P+ VT ++KA + G+ EE
Sbjct: 478 PHTVTVITLIKALFKEGMNEE 498
>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
Length = 600
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 139/317 (43%), Gaps = 35/317 (11%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKEL-FDVIDSMRSLPKKKFKT--GTLERWDPRLE---- 54
S PD V Y S+ L + G + E ++D S + T L R RLE
Sbjct: 185 SLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRRLESARQ 244
Query: 55 -----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
PDIV YNA+++ R + A + + +QG +P TY ++++ +L
Sbjct: 245 LLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLL 304
Query: 104 ACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+ N +E F + K + P+A+ Y V ++ L + G+ ++A+ ++DM+ +G V
Sbjct: 305 KEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVV 364
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+ + LC + +EA + + + P +S+ LI +G + A F +M
Sbjct: 365 SHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEM 424
Query: 223 -KNFCSPNLVTCNIMVKAYL---EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
K P +VT NI+V + G +EA+ LF M E +PD+
Sbjct: 425 LKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGR------------VPDVV 472
Query: 279 TFNTMLDACAAEKRWDD 295
T++ ++D + DD
Sbjct: 473 TYSALIDGLGKAGKLDD 489
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 128/278 (46%), Gaps = 18/278 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ + YNA+L+ + A + +++ + G P TY ++ GK + +
Sbjct: 83 PNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKI 142
Query: 115 FR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F V++ ++P+ + Y L+N + K DEA ++ M +V Y L LC
Sbjct: 143 FDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCK 202
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMK-NFCSPNLV 231
G+ +EA M I P V++Y+ LI C + +++A + +M N C P++V
Sbjct: 203 NGRVDEARML---IVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIV 259
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
+ N ++ EA+KLF + + + Y+ P++ T+N ++D E
Sbjct: 260 SYNALIHGLAREQGVSEALKLFGSV------LRQGYE------PEVPTYNILIDGLLKED 307
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
R ++ ++ ++ HGL +A + I +AG+VE
Sbjct: 308 RVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVE 345
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 141/329 (42%), Gaps = 39/329 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ + G + E + D G ++R PD+V YNA++
Sbjct: 118 PDVVTYNTLLHGFCKVGKLDEALKIFD------------GAVKRG---FVPDVVTYNALI 162
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
N + + + A +LQ++ + P TY ++ + G+ + V K + P
Sbjct: 163 NGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLI--VDKGFSP 220
Query: 125 NALAYKVLVNTLWRE-GKTDEAVSAVEDMERRG----IVGSAALYYDLARCLCSAGKCEE 179
N + Y L++ L RE + + A +E M G IV AL + LAR E
Sbjct: 221 NVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAR----EQGVSE 276
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
AL + + +P V +Y LI L + A +F+ + K+ P+ +T + +
Sbjct: 277 ALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFID 336
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G E+A+ + ++M D+KG V PD+ + N +++ EKR D+ E+
Sbjct: 337 GLCKAGRVEDALLMLKDM-----------DEKGCV-PDVVSHNAVINGLCKEKRVDEAEV 384
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGK 327
+ M G NA +I RAGK
Sbjct: 385 LLSGMEAKGCSPNAISFNTLICGQCRAGK 413
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 144/309 (46%), Gaps = 34/309 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y ++ L + + E + S+ + G EP++ YN ++
Sbjct: 256 PDIVSYNALIHGLAREQGVSEALKLFGSV-------LRQG--------YEPEVPTYNILI 300
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ ++ + AF + L + G +P A TY + ++ + G+ + + +K +
Sbjct: 301 DGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCV 360
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ +++ ++N L +E + DEA + ME +G +A + L C AGK ++A+
Sbjct: 361 PDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTT 420
Query: 184 MDKICKVANKPLVVSYTGLIQACLDS---GNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
++ K KP VV+Y L+ + G I+ A +F+ M + P++VT + ++
Sbjct: 421 FKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDG 480
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLEL 298
+ G ++A +L M + KG IP++YT+N+++ C +K + LEL
Sbjct: 481 LGKAGKLDDARRLLGAM-----------EAKG-CIPNVYTYNSLISGLCGLDKVDEALEL 528
Query: 299 VYKRMLHHG 307
+ M+ G
Sbjct: 529 -FVAMVEKG 536
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 123/272 (45%), Gaps = 17/272 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
LEPD + Y ++ + + E A +L+ + ++G P ++ V+ + + +
Sbjct: 324 LEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAE 383
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++ K PNA+++ L+ R GK +A++ ++M +RG+ + Y L L
Sbjct: 384 VLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGL 443
Query: 172 CSA---GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCS 227
C A G+ +EA+ D + + P VV+Y+ LI +G + +A + M+ C
Sbjct: 444 CKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCI 503
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
PN+ T N ++ +EA++LF M E KG V PD T+ T++ A
Sbjct: 504 PNVYTYNSLISGLCGLDKVDEALELFVAMVE-----------KGCV-PDTITYGTIISAL 551
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
++ D ++ L G+ + + +I
Sbjct: 552 CKQEMVDKALALFDGSLEAGVVPTSGMYFSLI 583
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 96/211 (45%), Gaps = 13/211 (6%)
Query: 90 PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAV 149
P A T G+++ +L GK + F ++ + + + + ++ L R + +A +
Sbjct: 14 PDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCDISTFNIYISGLCRASRIGDAQTVF 73
Query: 150 EDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS 209
+ M + G + Y L LC+ G+ +A +++ K P VV+Y L+
Sbjct: 74 DGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKV 133
Query: 210 GNIQNAAYIFN-QMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD 268
G + A IF+ +K P++VT N ++ + + +EA ++ Q M +S
Sbjct: 134 GKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSES-------- 185
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
++PD+ T+N++++ R D+ ++
Sbjct: 186 ----LVPDVVTYNSLVNGLCKNGRVDEARML 212
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 106/220 (48%), Gaps = 14/220 (6%)
Query: 111 VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
++ + K+ + Y P+A +L+ +L + GK ++A VE + +G+ + ++
Sbjct: 1 MHTVYDKLVRIYSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCDISTFNIYISG- 59
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
LC A + +A D + K P ++Y L+ + G + +A ++ +M K SP+
Sbjct: 60 LCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPD 119
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+VT N ++ + + G +EA+K+F K+G V PD+ T+N +++
Sbjct: 120 VVTYNTLLHGFCKVGKLDEALKIFDGAV-----------KRGFV-PDVVTYNALINGFCK 167
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ D+ + + +RM+ L + + ++ + G+V+
Sbjct: 168 ADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVD 207
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 86/181 (47%), Gaps = 19/181 (10%)
Query: 5 PDTVAYRSIAVTLGQA---GHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
P V Y + L +A G IKE + D+M + K + PD+V Y+
Sbjct: 431 PTVVTYNILVDGLCKARQEGRIKEAITLFDAM--IEKGRV-------------PDVVTYS 475
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQK 120
A+++ + + + A +L ++ +G P+ TY ++ + K + E F V+K
Sbjct: 476 ALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEK 535
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+P+ + Y +++ L ++ D+A++ + G+V ++ +Y+ L LC+ + +EA
Sbjct: 536 GCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEA 595
Query: 181 L 181
L
Sbjct: 596 L 596
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 6/172 (3%)
Query: 39 KKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEG----AFWVLQQLKQQGQKPSATT 94
KK T E ++P +V YN +++ + +Q EG A + + ++G+ P T
Sbjct: 415 KKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQ-EGRIKEAITLFDAMIEKGRVPDVVT 473
Query: 95 YGLVMEVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDME 153
Y +++ + GK + ++ K IPN Y L++ L K DEA+ M
Sbjct: 474 YSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMV 533
Query: 154 RRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+G V Y + LC ++AL D + P Y LI
Sbjct: 534 EKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDG 585
>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
Length = 471
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 93/441 (21%), Positives = 177/441 (40%), Gaps = 61/441 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y + + G + E + + M S+ LEP I YN++L
Sbjct: 41 PDGIEYNILIDGYAKKGRVDEANRLYEEMVSVG---------------LEPSIYTYNSLL 85
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE--FFRKVQKSY 122
NA + + + A + + + ++G +P TY ++ + GK E F + +++
Sbjct: 86 NAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGC 145
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
N +AY L+N L ++ + A +E+M +G V Y + LC GK EA
Sbjct: 146 SANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQ 205
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAY 240
D + P VV+Y GL+ A G A +F + K + P+ VT N ++
Sbjct: 206 FFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGY-MPDTVTYNSILLGL 264
Query: 241 LEHGLFEEAMKLFQEM------------------------AEDSNHINREYDKKGLVIPD 276
+EA ++F++M +D++ + E K G +PD
Sbjct: 265 ARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIG-AVPD 323
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWE 336
+ T+N +LD D ++ M+ +G + + ++ + KV + ++
Sbjct: 324 VVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFD 383
Query: 337 HLARADRITPPALIKERFCNRL-------ENKDYGSAISCLVSHPVSG-SPEF-SRNAWL 387
+ ++ P + + L E KD ++C SG +P++ + N +
Sbjct: 384 RMIER-KLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTC------SGCAPDYVAYNTLM 436
Query: 388 KFFKENSQHFGQDTLIQLLHE 408
++ +H D L Q + E
Sbjct: 437 NGLRKQGRHIQADRLTQAMKE 457
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/339 (21%), Positives = 150/339 (44%), Gaps = 30/339 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ +R + + + G +++ + + + M D + PD + YN ++
Sbjct: 6 PNRYTFRVVLKSFCKQGKLRDGYKLFEQM---------------LDNGISPDGIEYNILI 50
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ ++ + + A + +++ G +PS TY ++ K E F+ + +K +
Sbjct: 51 DGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFE 110
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAV-EDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ + Y +++ L + GK EA+ + M RG + Y L LC E A
Sbjct: 111 PDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYK 170
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYL 241
++++ P ++Y ++ G + A F+ M + SP++V N ++ A
Sbjct: 171 LLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALY 230
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G +EAMKLF+++ I + Y +PD T+N++L A + D+ E ++K
Sbjct: 231 KEGKTDEAMKLFKDV------IAKGY------MPDTVTYNSILLGLARKSNMDEAEEMFK 278
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
+M+ G N + ++ RA KV+ E +++
Sbjct: 279 KMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSK 317
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 24/137 (17%)
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKGLVI--- 274
CSPN T +++K++ + G + KLF++M ++ N + Y KKG V
Sbjct: 4 CSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEAN 63
Query: 275 ------------PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA 322
P IYT+N++L+A E + + ++K M G + + +I
Sbjct: 64 RLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGL 123
Query: 323 SRAGKV-ELLEITWEHL 338
+ GKV E LE+ + +
Sbjct: 124 CKTGKVTEALEMLFHKM 140
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 69/159 (43%), Gaps = 16/159 (10%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+ + PD V Y + L + + + ++ +M D PDIV Y
Sbjct: 318 IGAVPDVVTYNILLDGLCKTNLVDKAHELFSTM---------------VDNGCAPDIVSY 362
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
+ VLN + + A + ++ ++ P T+ ++M+ + GK + + ++
Sbjct: 363 SVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTC 422
Query: 121 SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
S P+ +AY L+N L ++G+ +A + M+ +G +
Sbjct: 423 SGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFL 461
>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
Length = 1393
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/316 (22%), Positives = 137/316 (43%), Gaps = 32/316 (10%)
Query: 17 LGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGA 76
L +AG + E ++D MR+ PD+V YN ++ ++ + A
Sbjct: 231 LCEAGRLPEAVRLVDGMRAYAV----------------PDVVTYNTLIRGLCKKSMPQEA 274
Query: 77 FWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNT 135
L+++ QG P TY +++ E + V K ++P+ + Y L+N
Sbjct: 275 MHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLING 334
Query: 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL 195
L EG + A+ + + +GI +Y L + LC G AL M+++ + P
Sbjct: 335 LCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPD 394
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQ--MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253
+ +Y +I GNI +A + N MK + P++ T N ++ Y + + A++L
Sbjct: 395 IQTYNIVINGLCKMGNISDATVVMNDAIMKGYL-PDVFTFNTLIDGYCKRLKLDSALQLV 453
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK 313
+ M E + PD T+N++L+ + +++ ++ M+ G H N
Sbjct: 454 ERMWEYG------------IAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPI 501
Query: 314 RHLRMILDASRAGKVE 329
+ +I + R+ K+E
Sbjct: 502 TYNILIENFCRSNKME 517
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/435 (22%), Positives = 172/435 (39%), Gaps = 45/435 (10%)
Query: 8 VAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNAC 67
VAY ++ L GH + + D M L F P++ +N VL+A
Sbjct: 152 VAYCTVVCGLYAHGHTHDARQLFDQM--LHTHVF-------------PNLAAFNKVLHAL 196
Query: 68 VRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNAL 127
+R A +L ++ Q+G + TY + + + G+ ++ +P+ +
Sbjct: 197 CKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVV 256
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
Y L+ L ++ EA+ + M +G + Y + C +EA +
Sbjct: 257 TYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDA 316
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLF 246
P V+Y LI G+++ A +FN+ + P++V N +VK GL
Sbjct: 317 VFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLI 376
Query: 247 EEAMKLFQEMAEDSNHIN-REYD-------KKGLV---------------IPDIYTFNTM 283
A+++ EMAE+ H + + Y+ K G + +PD++TFNT+
Sbjct: 377 LHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTL 436
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL----A 339
+D + D + +RM +G+ + + ++ +AGKV + T++ +
Sbjct: 437 IDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGC 496
Query: 340 RADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQ 399
+ IT LI E FC R + S + +S S N + F N G
Sbjct: 497 HPNPITYNILI-ENFC-RSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGA 554
Query: 400 DTLIQLLHEASSSLT 414
L Q L E S T
Sbjct: 555 YLLFQKLEEKGYSAT 569
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 132/321 (41%), Gaps = 30/321 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ L G ++ ++ + ++ ++PDIVVYN+++
Sbjct: 323 PDQVTYCSLINGLCAEGDVERALELFNEAQA---------------KGIKPDIVVYNSLV 367
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEFFRKVQKSYI 123
+ A V+ ++ ++G P TY +V+ + G + + K Y+
Sbjct: 368 KGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYL 427
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + L++ + K D A+ VE M GI Y + LC AGK E
Sbjct: 428 PDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNET 487
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ P ++Y LI+ S ++ A+ + +M + P+ V+ N ++ +
Sbjct: 488 FQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCR 547
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+G E A LFQ++ E + TFNT++ A + + E ++
Sbjct: 548 NGDLEGAYLLFQKLEEKGYSATAD------------TFNTLIGAFSGKLNMHMAEKIFDE 595
Query: 303 MLHHGLHFNAKRHLRMILDAS 323
ML G H R+++D S
Sbjct: 596 MLSKG-HRADSYTYRVLIDGS 615
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 107/240 (44%), Gaps = 19/240 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PD+ + L + + A +L+ L +G A Y V+ + A G +
Sbjct: 116 VSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGHTHDAR 171
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F ++ +++ PN A+ +++ L + G EA + + +RG+ + Y R L
Sbjct: 172 QLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGL 231
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
C AG+ EA+ +D + + P VV+Y LI+ Q A + +M N C P+
Sbjct: 232 CEAGRLPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDD 290
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T N ++ Y + + +EA +L ++ KG V PD T+ ++++ AE
Sbjct: 291 FTYNTIIDGYCKISMVQEATELLKDAV-----------FKGFV-PDQVTYCSLINGLCAE 338
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/202 (19%), Positives = 84/202 (41%), Gaps = 3/202 (1%)
Query: 49 WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY 108
W+ + PD + YN+VLN + + Q++ +G P+ TY +++E K
Sbjct: 457 WEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKM 516
Query: 109 NLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ K+ Q+ P+A+++ L+ R G + A + +E +G +A + L
Sbjct: 517 EEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTL 576
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMKNFC 226
A D++ ++ +Y LI + N+ A ++ +K
Sbjct: 577 IGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGF 636
Query: 227 SPNLVTCNIMVKAY-LEHGLFE 247
P++ T ++ + + H +F+
Sbjct: 637 IPSMSTFGRVINSLTVNHRVFQ 658
>gi|299116347|emb|CBN76149.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1139
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/332 (21%), Positives = 139/332 (41%), Gaps = 27/332 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ L G +++D M + K G + PD++ YN+ +
Sbjct: 578 PDVVTYNSLINVLRWGGQRDRALEILDGMNA----KGGAGGVR-------PDVITYNSAI 626
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YI 123
AC + + A ++ +++++G KP +Y + G R ++ S +
Sbjct: 627 AACASGGESKKASQLIGEMRRKGLKPDRYSYTSAIHACSKAGNPEEALRLLRAMEASNVV 686
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ +A ++ L GK EA++ +++M +G+ + Y + G+ + AL
Sbjct: 687 PDVIAMTACMDALAAGGKWSEAITILDEMRSKGVTPNERTYKAAIQACGRGGQWQRALEL 746
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-----FCSPNLVTCNIMVK 238
+ ++ A+ V Y + AC+ G A + QMK P++VT +
Sbjct: 747 LSRLENRASGATVQEYNCAMMACVTGGESGRALALLEQMKANKGGVNAGPDMVTYTSAIM 806
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
A G ++ A+ L EM E P+I ++ + AC ++W++
Sbjct: 807 ACSSTGKWDRALSLLDEMREAGPRTQ----------PNIRSYTAAIAACGRARKWEEAVA 856
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
++ ++L G+ + +I A R G+ +L
Sbjct: 857 LHSKLLEEGMSPDPASFNAVIRAARRGGQHKL 888
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 91/405 (22%), Positives = 152/405 (37%), Gaps = 65/405 (16%)
Query: 5 PDTVAYRSIAVTLGQAGHIKE----LFDVIDSMRSLPKKKFKTGTLERWDPRLEP----D 56
P TV +I +G+AG + E L D D+ + GT E + D
Sbjct: 433 PPTVCNTAILKAMGKAGKVDEAIAWLGDTYDAATATATAASGAGTTEDEQGSVRGFVCLD 492
Query: 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR 116
+ AVL+AC + +W A VL+++ + G P + V+
Sbjct: 493 HSSFMAVLSACSKAGRWGSALSVLREMDRAGVTPETVAFNTVLAAFEHRAHSGGSSSGGG 552
Query: 117 KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
++ +A ++L DMERRG+ Y L L G+
Sbjct: 553 AAKREAPRWPMALELLA-----------------DMERRGVEPDVVTYNSLINVLRWGGQ 595
Query: 177 CEEALMQMDKICKVAN----KPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
+ AL +D + +P V++Y I AC G + A+ + +M + P+
Sbjct: 596 RDRALEILDGMNAKGGAGGVRPDVITYNSAIAACASGGESKKASQLIGEMRRKGLKPDRY 655
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
+ + A + G EEA++L + M E SN V+PD+ +DA AA
Sbjct: 656 SYTSAIHACSKAGNPEEALRLLRAM-EASN-----------VVPDVIAMTACMDALAAGG 703
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIK 351
+W + + M G+ N + + I R G+ W+ AL
Sbjct: 704 KWSEAITILDEMRSKGVTPNERTYKAAIQACGRGGQ-------WQR----------AL-- 744
Query: 352 ERFCNRLENKDYGSAI---SCLVSHPVSGSPEFSRNAWLKFFKEN 393
+RLEN+ G+ + +C + V+G A L+ K N
Sbjct: 745 -ELLSRLENRASGATVQEYNCAMMACVTGGESGRALALLEQMKAN 788
>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
Length = 647
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 142/321 (44%), Gaps = 33/321 (10%)
Query: 42 KTGTLERWDPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG 96
KTG L+R L+ PD+V + V+N R K+ + AF VL++ + G +P TY
Sbjct: 21 KTGQLDRAMLLLDEMPCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYN 80
Query: 97 LVMEVMLACGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERR 155
+ ++ + + + ++ +K+ +K +P + Y LV+ L + G+ DEA++ +E M +
Sbjct: 81 VFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEK 140
Query: 156 GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA 215
G + Y + L AG+ EEA + +P YT LI G + A
Sbjct: 141 GNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEA 200
Query: 216 AYIFNQM-KNFCS----PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE--DSNHIN---- 264
NQM +N C+ P++V N++++ G E+A+ F E+ + D H
Sbjct: 201 LVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLDLTHFTFNPL 260
Query: 265 --------REYDKKGLV--------IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
R + V P ++T+ +++D R D+ L K + G
Sbjct: 261 VAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGF 320
Query: 309 HFNAKRHLRMILDASRAGKVE 329
+A + +I + G+VE
Sbjct: 321 IPDAVTYTSIIDGLCKLGRVE 341
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 143/307 (46%), Gaps = 26/307 (8%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R P + Y ++++ ++ + + A L++ ++G P A TY +++ + G+
Sbjct: 284 RCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEG 343
Query: 112 YEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
E F +++ + Y P+A+ Y L++ + +A M + G V S Y +
Sbjct: 344 CERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDG 403
Query: 171 LCSAGKCEEA---LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FC 226
LC AG+ EA + M++ VA VV+Y+ L+ GN+ A +F +M + C
Sbjct: 404 LCKAGRVAEAYATFLAMEERGCVAT---VVTYSALMDGFCSEGNVSAAVELFRRMLDRGC 460
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
PNLV+ NI+++ G +A F+++ + + PD+YTFN+ L
Sbjct: 461 EPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRR------------LCPDVYTFNSFLHG 508
Query: 287 CAA--EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL-LEITWEHLARADR 343
+ D +EL ++ M+ G N + ++ RAG +E+ LEI E ++R
Sbjct: 509 LCQRLDTVGDGVEL-FESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRG-- 565
Query: 344 ITPPALI 350
+ P ++
Sbjct: 566 VAPDVVV 572
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 122/302 (40%), Gaps = 30/302 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y SI L + G ++E + MR + EPD V Y A++
Sbjct: 322 PDAVTYTSIIDGLCKLGRVEEGCERFHEMR---------------NRGYEPDAVTYAALI 366
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ ++ K A V +Q+ Q G S TY ++++ + G+ Y F + ++ +
Sbjct: 367 DGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCV 426
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ Y L++ EG AV M RG + Y + R LC AGK +A
Sbjct: 427 ATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFY 486
Query: 184 MDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+K+ + P V ++ + C + + +F M SPNL + +I++
Sbjct: 487 FEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGIC 546
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G E +++F EM V PD+ FNT++ R D+ V++
Sbjct: 547 RAGGLEVTLEIFHEMVSRG------------VAPDVVVFNTLIRWLCIAGRVDEALEVFR 594
Query: 302 RM 303
+
Sbjct: 595 EL 596
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 98/477 (20%), Positives = 191/477 (40%), Gaps = 62/477 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM---RSLPKKKFKTGTLERWDP--RLE----- 54
P TV Y ++ L +AG + E +++ M + P K T ++ R+E
Sbjct: 109 PTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRI 168
Query: 55 ----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ----QGQKPSATTYGLVME 100
PD VY A+++ + + + A L Q+ + +G +P + LV+
Sbjct: 169 FVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIR 228
Query: 101 VMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ A G +F ++ S + LV L + +T+EA++ V+ M R +
Sbjct: 229 QLCASGNLEDALAYFDELDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPT 288
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y L G+ +EAL+Q+ + + P V+YT +I G ++ F+
Sbjct: 289 LFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFH 348
Query: 221 QMKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKG 271
+M+N P+ VT ++ +++ + +A +++++M + N I K G
Sbjct: 349 EMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAG 408
Query: 272 LV---------------IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316
V + + T++ ++D +E +++RML G N +
Sbjct: 409 RVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYN 468
Query: 317 RMILDASRAGKVELLEITWEHLARADRITPPALIKERF----CNRLENKDYGSAISCLVS 372
+I RAGK+ +E L + R+ P F C RL+ G + S
Sbjct: 469 IIIRGLCRAGKLAKAYFYFEKLLQR-RLCPDVYTFNSFLHGLCQRLDT--VGDGVELFES 525
Query: 373 HPVSG-SPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQNLI 428
G SP +++ + G + +++ HE + +R +P V+ N +
Sbjct: 526 MVSQGTSPNL--HSYSILMDGICRAGGLEVTLEIFHE----MVSRGVAPDVVVFNTL 576
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 8/184 (4%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D EP++V YN ++ R + A++ ++L Q+ P T+ + + C + +
Sbjct: 457 DRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGL--CQRLD 514
Query: 110 LVYE----FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
V + F V + PN +Y +L++ + R G + + +M RG+ ++
Sbjct: 515 TVGDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFN 574
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-N 224
L R LC AG+ +EAL ++ + + P SY L+ A ++ A + MK
Sbjct: 575 TLIRWLCIAGRVDEALEVFREL-ERRSAPDAWSYWSLLDALSRCERMEEARLLSFHMKLQ 633
Query: 225 FCSP 228
C+P
Sbjct: 634 GCAP 637
>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
Length = 773
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 120/248 (48%), Gaps = 23/248 (9%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE-- 113
++ + A++NA R Q+E + +L ++K++ +P+ TY V+ AC K L +E
Sbjct: 116 NVYAFTALINAYGRNGQYEASLHLLARMKKERVEPNLITYNTVLN---ACSKGGLDWEGL 172
Query: 114 --FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
F +++ I P+ + Y L++ G ++A + M G+V A Y L
Sbjct: 173 LNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDT 232
Query: 171 LCSA---GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
+ G+ EE L +M+ N P + Y LI+A D+GN+ AA +F QM + C
Sbjct: 233 FAGSNQLGRVEELLREME---DEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGC 289
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKGLVIPDIY 278
+P++ T + +++ Y G FE+ LF +M E S N + + + + G I
Sbjct: 290 APDVETYSTLLRIYGNQGCFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESIN 349
Query: 279 TFNTMLDA 286
F+ M+D+
Sbjct: 350 LFHDMVDS 357
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 2/206 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PD++ YN +L+AC R E A V + + + G A TY +++ + V
Sbjct: 184 IQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVE 243
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E R+++ + P+ Y L+ G A + M+R G Y L R
Sbjct: 244 ELLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIY 303
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
+ G E+ + +++ P V +Y LIQ + G Q + +F+ M + P+
Sbjct: 304 GNQGCFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDD 363
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEM 256
T + ++ GL EA K+ Q M
Sbjct: 364 ATYSALLSVCGRGGLTREAAKIHQHM 389
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 103/280 (36%), Gaps = 31/280 (11%)
Query: 6 DTVAYRSIAVTLG---QAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNA 62
D V Y+S+ T Q G ++EL E D PDI YN+
Sbjct: 222 DAVTYKSLVDTFAGSNQLGRVEELLR------------------EMEDEGNSPDIAGYNS 263
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-S 121
++ A GA V +Q+++ G P TY ++ + G + V F +++ S
Sbjct: 264 LIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKELS 323
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
P Y L+ G E+++ DM G+ A Y L G EA
Sbjct: 324 TPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAA 383
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAY 240
+ + P + + GLI + ++A + +++ P + + +++ Y
Sbjct: 384 KIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGY 443
Query: 241 LEHGLFEEAMKL--------FQEMAEDSNHINREYDKKGL 272
+ GL+ EA FQ N + Y K GL
Sbjct: 444 AKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVGL 483
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/257 (19%), Positives = 107/257 (41%), Gaps = 16/257 (6%)
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI--PNALAYKVLVNTLWREGKTDEAV 146
K + + L+ A ++ F+ +Q+ P Y +++ + REG ++
Sbjct: 43 KLTMQDFSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCS 102
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
EDM + + + L G+ E +L + ++ K +P +++Y ++ AC
Sbjct: 103 EIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKERVEPNLITYNTVLNAC 162
Query: 207 LDSG-NIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
G + + +F QM++ P+L+T N ++ A GL E+A +F+ M E
Sbjct: 163 SKGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESG---- 218
Query: 265 REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASR 324
V+ D T+ +++D A + +E + + M G + + +I +
Sbjct: 219 --------VVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNSPDIAGYNSLIEAYAD 270
Query: 325 AGKVELLEITWEHLARA 341
AG V ++ + R
Sbjct: 271 AGNVHGAAGVFKQMQRG 287
>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Brachypodium distachyon]
Length = 1285
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 152/358 (42%), Gaps = 30/358 (8%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD++ YN +++AC + + A V +++ +P TY ++ V CGK
Sbjct: 131 LRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRCGKAQDAE 190
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
FR+ V+K + P+A+ Y L+ +EG D E++ R G Y +
Sbjct: 191 RMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMY 250
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
G+ + AL D++ + P V+YT LI + I +A + +M + P L
Sbjct: 251 GKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTL 310
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT + ++ AY + G EEA++ F M V PD + MLD A
Sbjct: 311 VTFSALICAYAKGGRREEAVRTFSHMVASG------------VKPDRLAYLVMLDIIARS 358
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEH------------- 337
L +Y+ M++ G + + M+ ++ + + +E +
Sbjct: 359 GDMRKLMALYQTMMNDGYRPDNALYQVMLAALAKGNEYDEIEAVVQDMEVVCQMNPQLVS 418
Query: 338 --LARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKEN 393
L +A+ I+ A + ++ C + D S +S L ++ +G E + L+F +E+
Sbjct: 419 SILIKAECISQGAKLLKKACLQGHEPDSKSLLSILDAYETTGKHEEGL-SLLQFIREH 475
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 114/251 (45%), Gaps = 28/251 (11%)
Query: 122 YIPNALA--YKVLVNTLWREGKTDEAVSAVEDMERRG------IVGSAALYYDLARCLCS 173
++P A + ++ R G+ D+ ++ M RG +V L A+ C
Sbjct: 57 HLPGATVQVFNAMMGVYARSGRFDDVRQLLDAM--RGQELEPDLVSFNTLINARAKSGCL 114
Query: 174 A-GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLV 231
A G + L++ + +V +P V++Y LI AC N+ +A +F + M + C P+L
Sbjct: 115 APGSAFDLLLE---VRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLW 171
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N MV + G ++A ++F+E+ E KG PD T+N++L A A E
Sbjct: 172 TYNAMVSVHGRCGKAQDAERMFRELVE-----------KGFK-PDAVTYNSLLYAFAKEG 219
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIK 351
D +E V + ++ G + + MI + G+++L ++ + RA TP A+
Sbjct: 220 DADTVERVCEELVRAGFKKDGITYNTMIHMYGKMGRLDLALGLYDEM-RALGCTPDAVTY 278
Query: 352 ERFCNRLENKD 362
+ L D
Sbjct: 279 TVLIDSLGKMD 289
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 95/213 (44%), Gaps = 2/213 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P I N ++ A + + + + ++Q+L+ G K S +T L+++ G V +
Sbjct: 657 PTIDSVNGMMRALIIDGRLDELYVIVQELQDMGFKISKSTVILMLDAFTKAGDIFEVMKI 716
Query: 115 FRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ ++++ Y+PN Y+ +++ L R + + V +MER G + L
Sbjct: 717 YNGMKEAGYLPNMHIYRSMISLLCRNKRYRDVELMVVEMERAGFEPDLTILNTLLLMYTG 776
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G ++ + I + +P +Y LI + + + N+M K +P L +
Sbjct: 777 NGNFDKTVEVYHSILEAGLEPNEDTYNTLIVMYSRNLRPEEGFTLLNEMGKKGLTPKLES 836
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
++ A + L+E+A +LF+E+ +NR
Sbjct: 837 YKSLLAASGKAKLWEQAEQLFEEIRSKGYRLNR 869
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 123/289 (42%), Gaps = 24/289 (8%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG--KYNLV 111
EPD ++L+A + E +LQ +++ PS+ +ML C K
Sbjct: 443 EPDSKSLLSILDAYETTGKHEEGLSLLQFIREH--VPSSCNLISECSIMLLCKNQKIAAA 500
Query: 112 YEFFRKVQ----KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ + +Q S+ + Y+ L+ L EA DM+ GI S +Y +
Sbjct: 501 MQEYSSMQMLKCGSFGQDCNLYEYLITCLEEAEFFPEASQVFSDMQFIGIEPSRKIYESM 560
Query: 168 ARCLCSAGKCEEALMQMDKICKVA-NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC 226
C G E A MD+ + + ++ S +I+A Q+A +K
Sbjct: 561 ISAYCKLGFPETAHQLMDEAVQSGISLNILSSRVTMIEAYGKIKLWQHAENFVKGLKQEP 620
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
S + N ++ AY E GL+E A +F M E KG +P I + N M+ A
Sbjct: 621 SIDRRIWNALIHAYAESGLYEHARAVFDIMIE-----------KG-PLPTIDSVNGMMRA 668
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA-SRAGKV-ELLEI 333
+ R D+L ++ + + G +K + ++LDA ++AG + E+++I
Sbjct: 669 LIIDGRLDELYVIVQELQDMGFKI-SKSTVILMLDAFTKAGDIFEVMKI 716
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 100/242 (41%), Gaps = 33/242 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + +LG+ I + V++ M D L+P +V ++A++
Sbjct: 273 PDAVTYTVLIDSLGKMDRISDAGKVLEEMA---------------DAGLKPTLVTFSALI 317
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
A + + E A + G KP Y ++++++ G + ++ + Y
Sbjct: 318 CAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSGDMRKLMALYQTMMNDGYR 377
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDME-----RRGIVGSAALYYDLARCLCSAGKCE 178
P+ Y+V++ L + + DE + V+DME +V S + A C+ K
Sbjct: 378 PDNALYQVMLAALAKGNEYDEIEAVVQDMEVVCQMNPQLVSSILIK---AECISQGAKL- 433
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC--SPNLVT-CNI 235
+ K C ++P S ++ A +G + + ++ S NL++ C+I
Sbjct: 434 -----LKKACLQGHEPDSKSLLSILDAYETTGKHEEGLSLLQFIREHVPSSCNLISECSI 488
Query: 236 MV 237
M+
Sbjct: 489 ML 490
>gi|356533985|ref|XP_003535538.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like, partial [Glycine max]
Length = 594
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 131/293 (44%), Gaps = 29/293 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V + + G+ G I E D + M ++G + PD YN ++
Sbjct: 206 PNAVTHNIMVKWFGKEGKINEASDAVVKM-------VESG--------VSPDCFTYNTMI 250
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
N + + AF ++ ++ ++G KP T ++ + K YE K +K YI
Sbjct: 251 NGFCKAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVKARKRGYI 310
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y L+ ++ + D+A+ E+M++RGIV S Y L R LC +GK ++A+ +
Sbjct: 311 LDEVTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRGLCLSGKTDQAVDK 370
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++++ + P VS +I G + A N+M N P++ T NI+++
Sbjct: 371 LNELLEKGLVPDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNSFKPDIFTRNILLRGLCR 430
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
+ E+A KLF N + D+ T+NTM+ E R D+
Sbjct: 431 VDMLEKAFKLFNSWISKQNSV------------DVVTYNTMISYLCKEGRLDE 471
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 136/334 (40%), Gaps = 68/334 (20%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D Y ++ L G I E V D M SL +L PD+V YN +++
Sbjct: 136 DVWTYNTLVKGLCDEGKIDEAIRVRDEMESL---------------KLIPDVVTYNTLID 180
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
C + + F +L+++K +G +P+A T+ ++++ GK N + K+ +S +
Sbjct: 181 GCFKWRGSTEGFRLLEEMKSRGGVEPNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVS 240
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL-- 181
P+ Y ++N + GK EA +++M R+G+ + LC K EEA
Sbjct: 241 PDCFTYNTMINGFCKAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAYEL 300
Query: 182 --------------------------MQMDKICKVANK-------PLVVSYTGLIQACLD 208
Q DK K+ + P VVSY LI+
Sbjct: 301 TVKARKRGYILDEVTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRGLCL 360
Query: 209 SGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
SG A N+ ++ P+ V+CNI++ Y G+ ++A + +M +S
Sbjct: 361 SGKTDQAVDKLNELLEKGLVPDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNS------- 413
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
PDI+T N +L R D LE +K
Sbjct: 414 -----FKPDIFTRNILLRGLC---RVDMLEKAFK 439
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 86/218 (39%), Gaps = 31/218 (14%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEG----AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY 108
L PD V N +++ WEG AF ++ KP T +++ +
Sbjct: 379 LVPDEVSCNIIIHGYC----WEGMVDKAFQFHNKMVGNSFKPDIFTRNILLRGLCRVDML 434
Query: 109 NLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
++ F + K + + Y +++ L +EG+ DEA + DME + Y +
Sbjct: 435 EKAFKLFNSWISKQNSVDVVTYNTMISYLCKEGRLDEAFDLMTDMEVKKFEPDQYTYNAI 494
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227
R L AG+ EEA M K+ + V Q S +I + Q+ + C+
Sbjct: 495 VRALTHAGRTEEAEKFMSKLSETGQ---AVKTHDTSQELDASSDIMYS----QQISDLCT 547
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
G ++EAMKLFQE + +N+
Sbjct: 548 ---------------QGKYKEAMKLFQESEQKGVSLNK 570
>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
Length = 561
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/303 (20%), Positives = 133/303 (43%), Gaps = 30/303 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y S+ L +AG + + ++++D MR D + P + V+N V+
Sbjct: 28 PNEFTYGSLIHGLCKAGKLDQAYELLDEMR---------------DRGIPPGVAVHNGVI 72
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-- 122
+ ++ A + + P T+ ++++ ++ G+ ++ F + S
Sbjct: 73 KGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQC 132
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+PN + Y ++N L ++GK D A+ ++ M G + Y L LC AG+ ++
Sbjct: 133 LPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFT 192
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ ++ + +P V+ Y L+ S + A + M ++ C P +VT N +++ +
Sbjct: 193 LLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFC 252
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ A +L Q M+E PD+ +NT++ + R DD + + K
Sbjct: 253 RSKQVDRAFRLIQVMSERG------------CPPDVINYNTVIAGLCRDARLDDAQALLK 300
Query: 302 RML 304
+M+
Sbjct: 301 QMV 303
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 110/238 (46%), Gaps = 31/238 (13%)
Query: 99 MEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ +++ G++ + FR ++ +PN Y L++ L + GK D+A +++M RGI
Sbjct: 5 LNLLVRAGQHGQAVQLFR--EERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIP 62
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
A++ + + LC AG+ +AL + P ++++ L+ A + SG ++ A I
Sbjct: 63 PGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQI 122
Query: 219 FNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN------------ 264
F M + C PN+VT ++ + G + A++L M E N
Sbjct: 123 FESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLC 182
Query: 265 ------------REYDKKGLVIPDIYTFNTMLDACAAEKRWDD-LELVYKRMLHHGLH 309
+E ++G PD+ +NT+L+ +R D+ LELV + M+ G +
Sbjct: 183 KAGRTDKGFTLLQEMTRRGFQ-PDVIMYNTLLNGLCKSRRLDEALELV-QLMIRSGCY 238
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 104/230 (45%), Gaps = 16/230 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + + + L ++G ++E F + +SM + + P++V Y V+
Sbjct: 98 PDIITFNILVDALVKSGRVEEAFQIFESMHT--------------SSQCLPNVVTYTTVI 143
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N + + + A +L + + G P+ TY +++E + G+ + + +++ ++ +
Sbjct: 144 NGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQ 203
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L+N L + + DEA+ V+ M R G + Y L C + + + A
Sbjct: 204 PDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRL 263
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+ + + P V++Y +I + +A + QM C P+++T
Sbjct: 264 IQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVIT 313
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/368 (20%), Positives = 148/368 (40%), Gaps = 71/368 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y + L +AG + F ++ M ++ F +PD+++YN +L
Sbjct: 169 PNVITYSVLVEGLCKAGRTDKGFTLLQEM---TRRGF------------QPDVIMYNTLL 213
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME----------------VMLACG-- 106
N + ++ + A ++Q + + G P+ TY +ME VM G
Sbjct: 214 NGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCP 273
Query: 107 ----KYNLVYEFF--------------RKVQKSYIPNALAYKVLVNTL---WR---EGKT 142
YN V + V +P+ + Y +++ L WR + K
Sbjct: 274 PDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKL 333
Query: 143 DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGL 202
+ A +E M++ G +A Y + LC A K ++AL + ++ P + S++ +
Sbjct: 334 EAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMV 393
Query: 203 IQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSN 261
I + S ++ A IF M + C PN V ++ + G ++A+++F+ M E
Sbjct: 394 IGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFR 453
Query: 262 HINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILD 321
P + T+N++LD R ++ + + M+H + + +I
Sbjct: 454 -------------PGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRG 500
Query: 322 ASRAGKVE 329
R VE
Sbjct: 501 LCRVSCVE 508
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/337 (19%), Positives = 129/337 (38%), Gaps = 47/337 (13%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
YP V Y S+ ++ + F +I M ER P PD++ YN
Sbjct: 236 GCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMS------------ERGCP---PDVINYN 280
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML------ACGKYNLVYEFF 115
V+ R + + A +L+Q+ P TY +++ + A K E
Sbjct: 281 TVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEIL 340
Query: 116 RKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
++++ P NA Y V++ L R K+ +A++ + M +V + + + LC +
Sbjct: 341 EMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKS 400
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCN 234
+ A + + KP V+Y LI G + A +F M P + T N
Sbjct: 401 HDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATYN 460
Query: 235 IMVKAYLEHGLFEEAMKLFQEM------------------------AEDSNHINREYDKK 270
++ G EEA+++ + M E++ + + + K
Sbjct: 461 SVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAK 520
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
G + ++ +N +++ +KR D V +++ G
Sbjct: 521 GFAM-EVGVYNVLVNELCKKKRLSDAHGVANKLIEAG 556
>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
Length = 561
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/303 (20%), Positives = 133/303 (43%), Gaps = 30/303 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y S+ L +AG + + ++++D MR D + P + V+N V+
Sbjct: 28 PNEFTYGSLIHGLCKAGKLDQAYELLDEMR---------------DRGIPPGVAVHNGVI 72
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-- 122
+ ++ A + + P T+ ++++ ++ G+ ++ F + S
Sbjct: 73 RGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQC 132
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+PN + Y ++N L ++GK D A+ ++ M G + Y L LC AG+ ++
Sbjct: 133 LPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFT 192
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ ++ + +P V+ Y L+ S + A + M ++ C P +VT N +++ +
Sbjct: 193 LLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFC 252
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ A +L Q M+E PD+ +NT++ + R DD + + K
Sbjct: 253 RSKQVDRAFRLIQVMSERG------------CPPDVINYNTVIAGLCRDARLDDAQALLK 300
Query: 302 RML 304
+M+
Sbjct: 301 QMV 303
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 110/238 (46%), Gaps = 31/238 (13%)
Query: 99 MEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ +++ G++ + FR ++ +PN Y L++ L + GK D+A +++M RGI
Sbjct: 5 LNLLVRAGQHGQAVQLFR--EERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIP 62
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
A++ + R LC AG+ +AL + P ++++ L+ A + SG ++ A I
Sbjct: 63 PGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQI 122
Query: 219 FNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN------------ 264
F M + C PN+VT ++ + G + A++L M E N
Sbjct: 123 FESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLC 182
Query: 265 ------------REYDKKGLVIPDIYTFNTMLDACAAEKRWDD-LELVYKRMLHHGLH 309
+E ++G PD+ +NT+L+ +R D+ LELV + M+ G +
Sbjct: 183 KAGRTDKGFTLLQEMTRRGFQ-PDVIMYNTLLNGLCKSRRLDEALELV-QLMIRSGCY 238
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 104/230 (45%), Gaps = 16/230 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + + + L ++G ++E F + +SM + + P++V Y V+
Sbjct: 98 PDIITFNILVDALVKSGRVEEAFQIFESMHT--------------SSQCLPNVVTYTTVI 143
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N + + + A +L + + G P+ TY +++E + G+ + + +++ ++ +
Sbjct: 144 NGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQ 203
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L+N L + + DEA+ V+ M R G + Y L C + + + A
Sbjct: 204 PDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRL 263
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+ + + P V++Y +I + +A + QM C P+++T
Sbjct: 264 IQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVIT 313
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/368 (20%), Positives = 148/368 (40%), Gaps = 71/368 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y + L +AG + F ++ M ++ F +PD+++YN +L
Sbjct: 169 PNVITYSVLVEGLCKAGRTDKGFTLLQEM---TRRGF------------QPDVIMYNTLL 213
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME----------------VMLACG-- 106
N + ++ + A ++Q + + G P+ TY +ME VM G
Sbjct: 214 NGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCP 273
Query: 107 ----KYNLVYEFF--------------RKVQKSYIPNALAYKVLVNTL---WR---EGKT 142
YN V + V +P+ + Y +++ L WR + K
Sbjct: 274 PDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKL 333
Query: 143 DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGL 202
+ A +E M++ G +A Y + LC A K ++AL + ++ P + S++ +
Sbjct: 334 EAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMV 393
Query: 203 IQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSN 261
I + S ++ A IF M + C PN V ++ + G ++A+++F+ M E
Sbjct: 394 IGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFR 453
Query: 262 HINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILD 321
P + T+N++LD R ++ + + M+H + + +I
Sbjct: 454 -------------PGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRG 500
Query: 322 ASRAGKVE 329
R VE
Sbjct: 501 LCRVSCVE 508
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/337 (19%), Positives = 129/337 (38%), Gaps = 47/337 (13%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
YP V Y S+ ++ + F +I M ER P PD++ YN
Sbjct: 236 GCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMS------------ERGCP---PDVINYN 280
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML------ACGKYNLVYEFF 115
V+ R + + A +L+Q+ P TY +++ + A K E
Sbjct: 281 TVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEIL 340
Query: 116 RKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
++++ P NA Y V++ L R K+ +A++ + M +V + + + LC +
Sbjct: 341 EMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKS 400
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCN 234
+ A + + KP V+Y LI G + A +F M P + T N
Sbjct: 401 HDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATYN 460
Query: 235 IMVKAYLEHGLFEEAMKLFQEM------------------------AEDSNHINREYDKK 270
++ G EEA+++ + M E++ + + + K
Sbjct: 461 SVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAK 520
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
G + ++ +N +++ +KR D V +++ G
Sbjct: 521 GFAM-EVGVYNVLVNELCKKKRLSDAHGVANKLIEAG 556
>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
Length = 1380
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/316 (22%), Positives = 137/316 (43%), Gaps = 32/316 (10%)
Query: 17 LGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGA 76
L +AG + E ++D MR+ PD+V YN ++ ++ + A
Sbjct: 232 LCEAGRLPEAVRLVDGMRAYAV----------------PDVVTYNTLIRGLCKKSMPQEA 275
Query: 77 FWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNT 135
L+++ QG P TY +++ E + V K ++P+ + Y L+N
Sbjct: 276 MHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLING 335
Query: 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL 195
L EG + A+ + + +GI +Y L + LC G AL M+++ + P
Sbjct: 336 LCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPD 395
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQ--MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253
+ +Y +I GNI +A + N MK + P++ T N ++ Y + + A++L
Sbjct: 396 IQTYNIVINGLCKMGNISDATVVMNDAIMKGYL-PDVFTFNTLIDGYCKRLKLDSALQLV 454
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK 313
+ M E + PD T+N++L+ + +++ ++ M+ G H N
Sbjct: 455 ERMWEYG------------IAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPI 502
Query: 314 RHLRMILDASRAGKVE 329
+ +I + R+ K+E
Sbjct: 503 TYNILIENFCRSNKME 518
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 97/435 (22%), Positives = 172/435 (39%), Gaps = 45/435 (10%)
Query: 8 VAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNAC 67
VAY ++ L GH + + D M L F P++ +N VL+A
Sbjct: 153 VAYCTVVCGLYAHGHTHDARQLFDQM--LHTHVF-------------PNLAAFNKVLHAL 197
Query: 68 VRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNAL 127
+R A +L ++ Q+G + TY + + + G+ ++ +P+ +
Sbjct: 198 CKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVV 257
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
Y L+ L ++ EA+ + M +G + Y + C +EA +
Sbjct: 258 TYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDA 317
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLF 246
P V+Y LI G+++ A +FN+ + P++V N +VK GL
Sbjct: 318 VFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLI 377
Query: 247 EEAMKLFQEMAEDSNHIN-REYD-------KKGLV---------------IPDIYTFNTM 283
A+++ EMAE+ H + + Y+ K G + +PD++TFNT+
Sbjct: 378 LHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTL 437
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL----A 339
+D + D + +RM +G+ + + ++ +AGKV + T++ +
Sbjct: 438 IDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGC 497
Query: 340 RADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQ 399
+ IT LI E FC R + S + +S S N + F N G
Sbjct: 498 HPNPITYNILI-ENFC-RSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGA 555
Query: 400 DTLIQLLHEASSSLT 414
L Q L E S T
Sbjct: 556 YLLFQKLEEKGYSAT 570
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 132/321 (41%), Gaps = 30/321 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ L G ++ ++ + ++ ++PDIVVYN+++
Sbjct: 324 PDQVTYCSLINGLCAEGDVERALELFNEAQA---------------KGIKPDIVVYNSLV 368
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEFFRKVQKSYI 123
+ A V+ ++ ++G P TY +V+ + G + + K Y+
Sbjct: 369 KGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYL 428
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + L++ + K D A+ VE M GI Y + LC AGK E
Sbjct: 429 PDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNET 488
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ P ++Y LI+ S ++ A+ + +M + P+ V+ N ++ +
Sbjct: 489 FQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCR 548
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+G E A LFQ++ E + TFNT++ A + + E ++
Sbjct: 549 NGDLEGAYLLFQKLEEKGYSATAD------------TFNTLIGAFSGKLNMHMAEKIFDE 596
Query: 303 MLHHGLHFNAKRHLRMILDAS 323
ML G H R+++D S
Sbjct: 597 MLSKG-HRADSYTYRVLIDGS 616
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 107/240 (44%), Gaps = 19/240 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PD+ + L + + A +L+ L +G A Y V+ + A G +
Sbjct: 117 VSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGHTHDAR 172
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F ++ +++ PN A+ +++ L + G EA + + +RG+ + Y R L
Sbjct: 173 QLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGL 232
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
C AG+ EA+ +D + + P VV+Y LI+ Q A + +M N C P+
Sbjct: 233 CEAGRLPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDD 291
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T N ++ Y + + +EA +L ++ KG V PD T+ ++++ AE
Sbjct: 292 FTYNTIIDGYCKISMVQEATELLKDAV-----------FKGFV-PDQVTYCSLINGLCAE 339
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/202 (19%), Positives = 84/202 (41%), Gaps = 3/202 (1%)
Query: 49 WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY 108
W+ + PD + YN+VLN + + Q++ +G P+ TY +++E K
Sbjct: 458 WEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKM 517
Query: 109 NLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ K+ Q+ P+A+++ L+ R G + A + +E +G +A + L
Sbjct: 518 EEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTL 577
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMKNFC 226
A D++ ++ +Y LI + N+ A ++ +K
Sbjct: 578 IGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGF 637
Query: 227 SPNLVTCNIMVKAY-LEHGLFE 247
P++ T ++ + + H +F+
Sbjct: 638 IPSMSTFGRVINSLTVNHRVFQ 659
>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 133/311 (42%), Gaps = 18/311 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E R+ P++ YN ++ + + ++++ G P+ TY +++ G
Sbjct: 204 EMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMG 263
Query: 107 KYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ + + + + K PN ++Y V++N L REG EA +E+M +G Y
Sbjct: 264 RIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYN 323
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-N 224
L C G +AL+ ++ + P VV+YT LI + + N+ A F+QM+
Sbjct: 324 TLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIR 383
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
PN T ++ + GL EA ++ EM E P + T+N +
Sbjct: 384 GLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESG------------FSPSVVTYNAFI 431
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE-LLEITWEHLARA-- 341
+R ++ V + M+ GL + + +I R G+++ ++ E + +
Sbjct: 432 HGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVS 491
Query: 342 -DRITPPALIK 351
D +T +LI+
Sbjct: 492 PDAVTYSSLIQ 502
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 89/364 (24%), Positives = 157/364 (43%), Gaps = 37/364 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ ++Y I L + G +KE +++++ M +K T PD V YN +L
Sbjct: 282 PNLISYNVIINGLCREGSMKEAWEILEEM------GYKGFT---------PDEVTYNTLL 326
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
N + + A + ++ + G PS TY ++ M N EFF +++ +
Sbjct: 327 NGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLR 386
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y L++ R+G +EA + +M G S Y C + EEAL
Sbjct: 387 PNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGV 446
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ ++ + P VVSY+ +I G + A + +M + SP+ VT + +++ E
Sbjct: 447 VQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCE 506
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
EA L QEM + GL PD +T+ T+++A E + ++
Sbjct: 507 MRRLTEACDLSQEMLD-----------MGLP-PDEFTYTTLINAYCVEGDLNKALHLHDE 554
Query: 303 MLHHGLHFNAKRHLRMI-----LDASRAGKVELLEITWEHLARADRITPPALIKERFCNR 357
M+H G +A + +I +R K L ++ +E +D +T LI+ C+
Sbjct: 555 MIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSD-VTYDTLIEN--CSN 611
Query: 358 LENK 361
+E K
Sbjct: 612 IEFK 615
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 89/194 (45%), Gaps = 23/194 (11%)
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVE---DMERRGIVGSAALYYDLARCLCSAGKCE 178
++P L+Y +++ + R + +SA E +M R + + Y L R CS G+ +
Sbjct: 173 FMPGVLSYNSVLDAIVRS-RGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQ 231
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS----PNLVTCN 234
+ L ++ + P VV+Y LI A G I A F +K+ S PNL++ N
Sbjct: 232 KGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEA---FGLLKSMSSKGMQPNLISYN 288
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
+++ G +EA ++ +EM KG PD T+NT+L+ E +
Sbjct: 289 VIINGLCREGSMKEAWEILEEMG-----------YKGFT-PDEVTYNTLLNGYCKEGNFH 336
Query: 295 DLELVYKRMLHHGL 308
+++ M+ +G+
Sbjct: 337 QALVIHAEMVRNGV 350
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 101/261 (38%), Gaps = 32/261 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y +I + G + F + M + + PD V Y++++
Sbjct: 457 PDVVSYSTIISGFCRKGELDRAFQMKQEM---------------VEKGVSPDAVTYSSLI 501
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
++ A + Q++ G P TY ++ G N + + K ++
Sbjct: 502 QGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFL 561
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY---------------YDLA 168
P+A+ Y VL+N L ++ +T EA + + V S Y L
Sbjct: 562 PDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALI 621
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
+ C G EA + + + +KP Y +I GN+ A ++ +M +
Sbjct: 622 KGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFV 681
Query: 228 PNLVTCNIMVKAYLEHGLFEE 248
P+ VT ++KA + G+ EE
Sbjct: 682 PHTVTVITLIKALFKEGMNEE 702
>gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
Length = 504
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 110/222 (49%), Gaps = 4/222 (1%)
Query: 48 RWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ-QGQKPSATTYGLVMEVMLACG 106
R L P+ ++N ++ R + AF V++++K + P+ TY ++ + G
Sbjct: 181 RSKLNLRPNTCIFNILVKHHCRNGDLQAAFEVVKEMKSARVSYPNLVTYSTLIGGLCENG 240
Query: 107 KYNLVYEFFRKV--QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
K EFF ++ + + +P+AL Y +L+N + GK D A + +E M+ G + Y
Sbjct: 241 KLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTILEFMKSNGCSPNVFNY 300
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
L C G+ +EA ++I + KP +SYT LI +G + A + QMK+
Sbjct: 301 SVLMNGYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQQMKD 360
Query: 225 F-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
C + VT N+M+ G F+EA+ + Q++ + ++N+
Sbjct: 361 KDCRADTVTFNVMLGGLCREGRFDEALDMVQKLPFEGFYLNK 402
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 15/186 (8%)
Query: 3 SYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNA 62
SYP+ V Y ++ L + G +KE + + M S + PD + YN
Sbjct: 222 SYPNLVTYSTLIGGLCENGKLKEAIEFFEEMVS--------------KDNILPDALTYNI 267
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-S 121
++N +R + + A +L+ +K G P+ Y ++M G+ E F +++
Sbjct: 268 LINGFCQRGKVDRARTILEFMKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLG 327
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
P+ ++Y L+N L R G+ DEA ++ M+ + + + LC G+ +EAL
Sbjct: 328 MKPDTISYTTLINCLCRTGRVDEATELLQQMKDKDCRADTVTFNVMLGGLCREGRFDEAL 387
Query: 182 MQMDKI 187
+ K+
Sbjct: 388 DMVQKL 393
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 88/191 (46%), Gaps = 16/191 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y + + G ++E +V + ++SL K PD + Y ++
Sbjct: 295 PNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMK---------------PDTISYTTLI 339
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
N R + + A +LQQ+K + + T+ +++ + G+++ + +K+ + +
Sbjct: 340 NCLCRTGRVDEATELLQQMKDKDCRADTVTFNVMLGGLCREGRFDEALDMVQKLPFEGFY 399
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N +Y++++N L ++G+ +A + M RG V A L LC+ G ++A+
Sbjct: 400 LNKGSYRIVLNFLTQKGELRKATELLGLMLNRGFVPHHATSNTLLLLLCNNGMVKDAVES 459
Query: 184 MDKICKVANKP 194
+ + ++ KP
Sbjct: 460 LLGLLEMGFKP 470
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--FCSPNLVTCNIMVKAYLEHGLF 246
K+ +P + L++ +G++Q A + +MK+ PNLVT + ++ E+G
Sbjct: 183 KLNLRPNTCIFNILVKHHCRNGDLQAAFEVVKEMKSARVSYPNLVTYSTLIGGLCENGKL 242
Query: 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306
+EA++ F+EM N ++PD T+N +++ + D + + M +
Sbjct: 243 KEAIEFFEEMVSKDN-----------ILPDALTYNILINGFCQRGKVDRARTILEFMKSN 291
Query: 307 G 307
G
Sbjct: 292 G 292
>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/337 (20%), Positives = 144/337 (42%), Gaps = 29/337 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V S+ + I + ++D M + K PD + ++
Sbjct: 151 PDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYK---------------PDTFTFTTLI 195
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + A ++ Q+ Q+G +P TYG V+ + G +L K++ + I
Sbjct: 196 HGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIK 255
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + + ++++L + + AV +ME +GI + Y L CLC+ G+ +A
Sbjct: 256 ANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRL 315
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + + P VV++ LI A G + A + +M + P+ +T N+++ +
Sbjct: 316 LSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCM 375
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
H +EA ++F+ M +P+I T+NT+++ KR +D +++
Sbjct: 376 HNRLDEAKQMFKFMVSKD------------CLPNIQTYNTLINGFCKCKRVEDGVELFRE 423
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
M GL N + +I +AG + ++ ++ +
Sbjct: 424 MSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMV 460
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 130/289 (44%), Gaps = 21/289 (7%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ ++ P++V +NA+++A + + A + +++ Q+ P TY L++ + +
Sbjct: 321 EKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLD 380
Query: 110 LVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
+ F+ V K +PN Y L+N + + ++ V +M +RG+VG+ Y +
Sbjct: 381 EAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTII 440
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
+ AG C+ A M ++ +++Y+ L+ G + A IF + K+
Sbjct: 441 QGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEME 500
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
N+ N M++ + G EA LF ++ + PD+ T+NTM+
Sbjct: 501 LNIFIYNTMIEGMCKAGKVGEAWDLFCSLS---------------IKPDVVTYNTMISGL 545
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI----LDASRAGKVELLE 332
+++ + + ++++M G N+ + +I D RA EL++
Sbjct: 546 CSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIK 594
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/326 (19%), Positives = 140/326 (42%), Gaps = 29/326 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ L + G I ++++ M + R++ ++V++N ++
Sbjct: 221 PDLVTYGTVVNGLCKRGDIDLALNLLNKMEA---------------ARIKANVVIFNTII 265
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
++ + + E A + +++ +G +P+ TY ++ + G+++ ++K
Sbjct: 266 DSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKIN 325
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + L++ ++EGK EA E+M +R I Y L C + +EA
Sbjct: 326 PNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQM 385
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ P + +Y LI +++ +F +M + N VT +++ + +
Sbjct: 386 FKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQ 445
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + A +F++M NR V DI T++ +L + + D +++K
Sbjct: 446 AGDCDSAQMVFKQMVS-----NR-------VPTDIMTYSILLHGLCSYGKLDTALVIFKY 493
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV 328
+ + N + MI +AGKV
Sbjct: 494 LQKSEMELNIFIYNTMIEGMCKAGKV 519
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 137/313 (43%), Gaps = 21/313 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P IV +N +L+A + ++E + +Q++ G TY + + + +L
Sbjct: 81 PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y P+ + L+N + +AV+ V+ M G + L L
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
K EA+ +D++ + +P +V+Y ++ G+I A + N+M+ N+V
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVI 260
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ + ++ E A+ LF EM + KG + P++ T+N++++ R
Sbjct: 261 FNTIIDSLCKYRHVEVAVDLFTEM-----------ETKG-IRPNVVTYNSLINCLCNYGR 308
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLARA---DRITPPA 348
W D + ML ++ N +I + GK VE ++ E + R+ D IT
Sbjct: 309 WSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNL 368
Query: 349 LIKERFC--NRLE 359
LI FC NRL+
Sbjct: 369 LING-FCMHNRLD 380
>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
Length = 567
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 133/293 (45%), Gaps = 30/293 (10%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD +YNA+++ + K + AF L ++ + P+ TY +++ + + +
Sbjct: 75 PDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKL 134
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++ K PN Y V+V L E K DEA +E+M RG Y + LC
Sbjct: 135 LDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCK 194
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVT 232
+ +EA + ++ P VVSYT +I SG++ +A+ + + M N C+P++VT
Sbjct: 195 CDRVDEA---RKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVT 251
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEM----------AEDS--------NHINR------EYD 268
+ ++ + + G E AM L M A +S HI + E +
Sbjct: 252 YSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEME 311
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILD 321
++G PD+ ++N +D +R + V+ RM+ G NA + +I+D
Sbjct: 312 RRGFT-PDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVD 363
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 132/302 (43%), Gaps = 22/302 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y +I L +A ++ ++D MR D P+I YN ++
Sbjct: 110 PTVVTYTNIVDGLCKAERTRDAVKLLDEMR---------------DKGCSPNIYTYNVIV 154
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
++ + A +L+++ +G P TY ++ + C + + +F ++ + P
Sbjct: 155 EGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVT--P 212
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ ++Y ++N L + G D A ++ M RG Y L C G+ E A+ +
Sbjct: 213 DVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLL 272
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLE 242
D + K+ +P +V+Y L+ A G+I A + +M + F +P++V+ N + +
Sbjct: 273 DSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGF-TPDVVSYNACIDGLCK 331
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
++A +F M E N ++I DI + +LD R+D+ ++ +
Sbjct: 332 AERVKKAKAVFDRMVERGCTPNAS--SYSMLIVDILLYTVLLDGLCKGGRFDEACALFSK 389
Query: 303 ML 304
+L
Sbjct: 390 VL 391
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 123/271 (45%), Gaps = 29/271 (10%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+ P+ VAY S+ L + GHI + D++ M ++ F PD+V Y
Sbjct: 278 LGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEME---RRGFT------------PDVVSY 322
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG-LVMEVML-------AC--GKYNL 110
NA ++ + ++ + A V ++ ++G P+A++Y L+++++L C G+++
Sbjct: 323 NACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDE 382
Query: 111 VYEFFRKVQKSYI--PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
F KV I P+ Y V++++ + + D+A+ + M + + + L
Sbjct: 383 ACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCC-NVVTWNILV 441
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCS 227
LC + +A + + P V+Y L+ A G A +F + +K C
Sbjct: 442 HGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCV 501
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
P++VT + ++ + + EEA LF ++ E
Sbjct: 502 PDVVTYSALITGLVHENMAEEAYLLFTKLVE 532
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 129/317 (40%), Gaps = 52/317 (16%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M PD V+Y ++ L ++G + ++D M + PD+V Y
Sbjct: 208 MPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMS---------------NRGCTPDVVTY 252
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
+++++ + + E A +L + + G +P+ Y ++ + G + ++++
Sbjct: 253 SSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMER 312
Query: 121 -SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA----------LYYDLAR 169
+ P+ ++Y ++ L + + +A + + M RG +A+ LY L
Sbjct: 313 RGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLD 372
Query: 170 CLCSAGKCEEALMQM-----DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-- 222
LC G+ +EA +KIC+ P V Y ++ + I A I QM
Sbjct: 373 GLCKGGRFDEACALFSKVLDEKICE----PDVFFYNVMLDSHCKRRQIDKALQIHKQMLE 428
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
KN C N+VT NI+V +A + M ++ IPD T+ T
Sbjct: 429 KNCC--NVVTWNILVHGLCVDDRLSDAETMLLTMVDEG------------FIPDFVTYGT 474
Query: 283 MLDA-CAAEKRWDDLEL 298
++DA C K LEL
Sbjct: 475 LVDAMCKCGKSAAALEL 491
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 13/191 (6%)
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F + KS P+A + +L+ L R + ++A + M+ G V A+Y L
Sbjct: 30 FQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSK 89
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVT 232
A +A + ++ K P VV+YT ++ + ++A + ++M++ CSPN+ T
Sbjct: 90 AKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYT 149
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N++V+ E +EA K+ +EMA R Y PD+ T+N+ + R
Sbjct: 150 YNVIVEGLCEERKLDEAKKMLEEMAV------RGY------FPDVVTYNSFIKGLCKCDR 197
Query: 293 WDDLELVYKRM 303
D+ RM
Sbjct: 198 VDEARKFLARM 208
>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
Length = 795
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 137/325 (42%), Gaps = 30/325 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD AY ++ +AG ++ V M D ++P +V YN V
Sbjct: 182 PDASAYTALVSAFSRAGRFRDAVAVFQRM---------------VDGGVQPALVTYNVVF 226
Query: 65 NACVRRK-QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-Y 122
+A + W+ ++ +K+ G + TY ++ G + + F +++ + +
Sbjct: 227 HAYSKMSVPWKEVVALVDSMKEDGIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGF 286
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ + + L++ + K +EA+ ++ ME G S Y L G EEAL
Sbjct: 287 EPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALE 346
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
++ KP VV+YT LI G I A +++M +N CSPNL T N ++K +
Sbjct: 347 LKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHG 406
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G F E M +F ++ + +PD+ T+NT+L ++ V+K
Sbjct: 407 VRGKFTEMMAVFDDL------------RSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFK 454
Query: 302 RMLHHGLHFNAKRHLRMILDASRAG 326
M G ++ +I SR G
Sbjct: 455 EMKKAGYIPERDTYVSLISSYSRCG 479
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 118/302 (39%), Gaps = 64/302 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + S+ G+A +E V+ M + P +V YN+++
Sbjct: 288 PDKVTFNSLLDVYGKARKHEEAIGVLKRME---------------NAGCTPSVVTYNSLI 332
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+A V+ E A + Q+++ +G KP TY ++ + GK + + + V+
Sbjct: 333 SAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGCS 392
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y L+ GK E ++ +D+ G V
Sbjct: 393 PNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYV------------------------- 427
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLE 242
P VV++ L+ +G + +F +MK P T ++ +Y
Sbjct: 428 ----------PDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSR 477
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
GLF++AM++++ M E + PDI T+N +L A A RW+ E ++
Sbjct: 478 CGLFDQAMEIYKRMIEAG------------IYPDISTYNAVLSALARGGRWEQAEKLFAE 525
Query: 303 ML 304
M+
Sbjct: 526 MV 527
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 84/350 (24%), Positives = 140/350 (40%), Gaps = 79/350 (22%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKKFKTGTLERW------DPRLE- 54
PD V + ++ GQ G E+ V M+ +P++ + + D +E
Sbjct: 428 PDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEI 487
Query: 55 ----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG-------- 96
PDI YNAVL+A R +WE A + ++ + KP +Y
Sbjct: 488 YKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYAN 547
Query: 97 ------------------------LVMEVMLACGKYNLVYEF---FRKVQKSYIPNALAY 129
LV ++L K N + E F+++++ +L
Sbjct: 548 AKKLDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLPETEKAFQELRRRRC--SLDI 605
Query: 130 KVLVNTLWREGKTDEAVSAVED----MERRGIVGSAALYYDLARCLCSAGKCEEALMQMD 185
VL + GK ++ V VE+ M I SAA Y L G CE+ +
Sbjct: 606 NVLNAMVSIYGK-NKMVKKVEEVLSLMMENSINHSAATYNSLMHMYSRLGDCEKCESILT 664
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS---PNLVTCNIMVKAYLE 242
+I +P SY +I A G ++ A+ +F++MK CS P++VT NI +K+Y+
Sbjct: 665 EIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMK--CSGVKPDIVTYNIFIKSYVA 722
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+ +FEEA+ L + + P+ TFN++L + R
Sbjct: 723 NIMFEEAIDLVRYLVTQGCR------------PNERTFNSILQGYSRHGR 760
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 15/118 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +Y ++ G+ G +KE + M+ +G ++PDIV YN +
Sbjct: 673 PDRYSYNTVIYAYGRKGQMKEASRLFSEMKC-------SG--------VKPDIVTYNIFI 717
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY 122
+ V +E A +++ L QG +P+ T+ +++ G+ F + K Y
Sbjct: 718 KSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSILQGYSRHGRMVEAKSFLSNLPKIY 775
>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 485
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 78/362 (21%), Positives = 145/362 (40%), Gaps = 74/362 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V S+ Q + FD ID + + + F+ PD+V+YN ++
Sbjct: 137 PDVVTVSSLINGFCQGNRV---FDAIDLVSKMEEMGFR------------PDVVIYNTII 181
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + A + ++++ G + A TY ++ + G+++ R V + +
Sbjct: 182 DGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIV 241
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + +++ +EGK EA+ E+M RR + Y L LC G+ +EA
Sbjct: 242 PNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQM 301
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+D + P VV+Y LI S + +F +M + + +T N +++ Y +
Sbjct: 302 LDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQ 361
Query: 243 HG-------LF-------------------------EEAMKLFQEM-------------- 256
G +F E+A+ LF+ M
Sbjct: 362 AGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNI 421
Query: 257 ----------AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306
ED+ + R KGL PD+ ++ TM+ +++WD +L+Y++M
Sbjct: 422 VIHGMCKIGNVEDAWDLFRSLSCKGLK-PDVVSYTTMISGFCRKRQWDKSDLLYRKMQED 480
Query: 307 GL 308
GL
Sbjct: 481 GL 482
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 124/277 (44%), Gaps = 20/277 (7%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D+ YN V+N R ++ A V+ ++ + G +P T V ++ + N V++
Sbjct: 103 DLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVT---VSSLINGFCQGNRVFDAI 159
Query: 116 RKVQK----SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
V K + P+ + Y +++ + G ++AV + MER G+ A Y L L
Sbjct: 160 DLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGL 219
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNL 230
C +G+ +A M + P V+++T +I + G A ++ +M C P++
Sbjct: 220 CCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDV 279
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T N ++ HG +EA ++ M KG +PD+ T+NT+++
Sbjct: 280 FTYNSLINGLCMHGRVDEAKQMLDLMV-----------TKG-CLPDVVTYNTLINGFCKS 327
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
KR D+ +++ M GL + + +I +AG+
Sbjct: 328 KRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGR 364
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 14/252 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPD+V ++++N + + A ++ ++++ G +P Y +++ G N E
Sbjct: 136 EPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVE 195
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F ++++ + +A+ Y LV L G+ +A + DM R IV + + +
Sbjct: 196 LFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFV 255
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
GK EA+ +++ + P V +Y LI G + A + + M C P++V
Sbjct: 256 KEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVV 315
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ + + +E KLF+EMA+ +GLV D T+NT++
Sbjct: 316 TYNTLINGFCKSKRVDEGTKLFREMAQ-----------RGLV-GDTITYNTIIQGYFQAG 363
Query: 292 RWDDLELVYKRM 303
R D + ++ RM
Sbjct: 364 RPDAAQEIFSRM 375
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 112/255 (43%), Gaps = 14/255 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P IV ++ VL+ + K ++ + ++ G +Y +V+ + C ++ +
Sbjct: 67 PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 126
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y P+ + L+N + + +A+ V ME G +Y + C
Sbjct: 127 VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK 186
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G +A+ D++ + + V+Y L+ SG +AA + M PN++T
Sbjct: 187 IGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVIT 246
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
++ +++ G F EAMKL++EM + V PD++T+N++++ R
Sbjct: 247 FTAVIDVFVKEGKFSEAMKLYEEMT------------RRCVDPDVFTYNSLINGLCMHGR 294
Query: 293 WDDLELVYKRMLHHG 307
D+ + + M+ G
Sbjct: 295 VDEAKQMLDLMVTKG 309
>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1084
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 150/336 (44%), Gaps = 41/336 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV Y + L +A +E D++ MRS P++V Y +L
Sbjct: 277 PDTVFYNRMVSGLCEASLFEEAMDILHRMRS---------------SSCIPNVVTYRILL 321
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ C+R+ Q +L + +G P+ + ++ Y+ Y+ F+K+ K
Sbjct: 322 SGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQ 381
Query: 124 PNALAYKVLVNTLW--REGKTDEAVSAVE----DMERRGIVGSAALYYDLARCLCSAGKC 177
P L Y + + ++ E + + + VE +M G+V + + ARCLC AGK
Sbjct: 382 PGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKF 441
Query: 178 EEALMQMDKICKVANKPLV---VSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTC 233
++A IC++ K V +Y+ +I D+ ++ A +F +MK N P++ T
Sbjct: 442 DQAF---KIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTY 498
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
I++ ++ + GL ++A K F EM KG P++ T+ ++ A K+
Sbjct: 499 TILIDSFCKAGLIQQARKWFDEMLH-----------KGCT-PNVVTYTALIHAYLKAKQM 546
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ +++ ML G N + +I +AG++E
Sbjct: 547 PVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIE 582
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 122/262 (46%), Gaps = 13/262 (4%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLE------PDIV 58
P+ V Y ++ +AG I++ + MR ++ ++++ +L+ P+++
Sbjct: 563 PNVVTYTALIDGHCKAGQIEKACQIYARMRG----DIESSDMDKY-FKLDHNNCEGPNVI 617
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
Y A+++ + + + A +L + G +P+ Y V++ GK E F K+
Sbjct: 618 TYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKM 677
Query: 119 -QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
++ Y PN Y ++ L+++ + D + + M + +Y ++ LC GK
Sbjct: 678 SERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKT 737
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIM 236
+EA M K+ + P VV+YT +I SG I+ +F M C+PN +T ++
Sbjct: 738 DEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVL 797
Query: 237 VKAYLEHGLFEEAMKLFQEMAE 258
+ +GL +EA KL EM +
Sbjct: 798 INHCCSNGLLDEAYKLLDEMKQ 819
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 125/293 (42%), Gaps = 30/293 (10%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD Y+ V+ + E AF + +++K+ G PS TY ++++ G ++
Sbjct: 458 PDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKW 517
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F + + K PN + Y L++ + + A E M G + Y L C
Sbjct: 518 FDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCK 577
Query: 174 AGKCEEALM------------QMDKICKVANK----PLVVSYTGLIQACLDSGNIQNAAY 217
AG+ E+A MDK K+ + P V++Y L+ + ++ A
Sbjct: 578 AGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHE 637
Query: 218 IFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
+ + M + C PN + + ++ + + G ++A ++F +M+E R Y P+
Sbjct: 638 LLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSE------RGYS------PN 685
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+YT+++ +D + R D + V +ML + N + M+ + GK +
Sbjct: 686 LYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTD 738
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 89/198 (44%), Gaps = 4/198 (2%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQ 119
N ++ C R W A L +LK G KPS TTY +++V L K + Y R+ +
Sbjct: 180 NFLVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLS 239
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+++ + +L + GK EA +++ E V Y + LC A EE
Sbjct: 240 YAFVMDRYTLSCFAYSLCKGGKCREAFDLIDEAE--DFVPDTVFYNRMVSGLCEASLFEE 297
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A+ + ++ + P VV+Y L+ CL G + I + M C PN N ++
Sbjct: 298 AMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIH 357
Query: 239 AYLEHGLFEEAMKLFQEM 256
AY + + A KLF++M
Sbjct: 358 AYCKSRDYSYAYKLFKKM 375
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/341 (19%), Positives = 135/341 (39%), Gaps = 50/341 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLER---- 48
PD Y + L A +++ F + + M+ L K G +++
Sbjct: 458 PDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKW 517
Query: 49 WDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+D L P++V Y A+++A ++ KQ A + + + +G KP+ TY +++
Sbjct: 518 FDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCK 577
Query: 105 CGKYNLVYEFFRKVQ--------KSYI---------PNALAYKVLVNTLWREGKTDEAVS 147
G+ + + +++ Y PN + Y LV+ L + + EA
Sbjct: 578 AGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHE 637
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
++ M G + +Y + C GK ++A K+ + P + +Y+ I
Sbjct: 638 LLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLF 697
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
+ + ++M +N C+PN+V MV + G +EA KL +M E +
Sbjct: 698 KDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCN---- 753
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
P++ T+ M+D + + +++ M G
Sbjct: 754 --------PNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKG 786
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/294 (18%), Positives = 117/294 (39%), Gaps = 52/294 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y ++ L +A +KE +++D+M + EP+ +VY+AV+
Sbjct: 614 PNVITYGALVDGLCKANRVKEAHELLDTMLA---------------HGCEPNQIVYDAVI 658
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV------ 118
+ + + + A V ++ ++G P+ TY ++ + + +LV + K+
Sbjct: 659 DGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCT 718
Query: 119 ------------------------------QKSYIPNALAYKVLVNTLWREGKTDEAVSA 148
+K PN + Y +++ + GK ++ +
Sbjct: 719 PNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLEL 778
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
DM +G + Y L CS G +EA +D++ + ++S+ +I+
Sbjct: 779 FRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEG-FS 837
Query: 209 SGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNH 262
I + + +N P I++ Y++ G E A+ L +E++ +H
Sbjct: 838 QEFITSIGLLDELSENESVPVDSLYRILIDNYIKAGRLEVALDLLEEISSSPSH 891
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 51/222 (22%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ G++G I++ ++ M S P+ + Y ++
Sbjct: 754 PNVVTYTAMIDGFGKSGKIEQCLELFRDMCS---------------KGCAPNFITYRVLI 798
Query: 65 NACV--------------------------RRKQWEG-------AFWVLQQLKQQGQKPS 91
N C RK EG + +L +L + P
Sbjct: 799 NHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGFSQEFITSIGLLDELSENESVPV 858
Query: 92 ATTYGLVMEVMLACGKYNLVYEFFRKVQKS---YIPNALAYKVLVNTLWREGKTDEAVSA 148
+ Y ++++ + G+ + + ++ S + N Y L+ L K D+A+
Sbjct: 859 DSLYRILIDNYIKAGRLEVALDLLEEISSSPSHAVSNKYLYASLIENLSHASKVDKALEL 918
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
M + +V ++ L + L K +EAL D IC++
Sbjct: 919 YASMISKNVVPELSILVHLIKGLIKVDKWQEALQLSDSICQM 960
>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 748
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 133/306 (43%), Gaps = 29/306 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ + GH++ D M S ++ PD + Y ++
Sbjct: 361 PDNVVYTTLIHGFFKLGHVRTANKWFDEMLS---------------KKISPDYITYTTLI 405
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + ++ +G KP TY +++V G+ + + VQ
Sbjct: 406 QGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMT 465
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L++ L + G+ D A +++M ++G+ + +Y + +C AG E+A+
Sbjct: 466 PNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKL 525
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
M ++ P ++YT +I A G+I A + +M + P +VT N+++ +
Sbjct: 526 MKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCM 585
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G+ E+ +L M E KG+V PD T+NT++ + +YKR
Sbjct: 586 LGMLEDGDRLLGWMLE-----------KGIV-PDAITYNTLMKQHCIRNSMNTTTKIYKR 633
Query: 303 MLHHGL 308
M + G+
Sbjct: 634 MRNQGV 639
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/353 (19%), Positives = 138/353 (39%), Gaps = 48/353 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ +A+ L + GH+ E ++D + L +VV
Sbjct: 188 PNPIAFDIFFQVLVEIGHLSEARKLLDKL-------------------LSYGLVVTVDSC 228
Query: 65 NACVRR--KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KS 121
NA + R EG ++ + G + T+Y +++ + GK + ++ +S
Sbjct: 229 NAFLSRIANNSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRS 288
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
P+ ++Y +++ G+ +A+ ++DM+ +G+ + Y + LC GK EA
Sbjct: 289 STPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAE 348
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
+ ++ P V YT LI G+++ A F++M SP+ +T +++ +
Sbjct: 349 KVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGF 408
Query: 241 LEHGLFEEAMKLFQEMAE------------------------DSNHINREYDKKGLVIPD 276
+ G E LF EM ++ ++ E + G+ P+
Sbjct: 409 GQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMT-PN 467
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
I T+ ++D D + M GL N + M+ +AG +E
Sbjct: 468 IVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIE 520
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 99/248 (39%), Gaps = 29/248 (11%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLER 48
M P+ V Y ++ L + G + +++D MR S+ K G +E+
Sbjct: 462 MGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQ 521
Query: 49 WD--------PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY----- 95
++PD + Y V++A R + A +LQ++ +G +P+ T+
Sbjct: 522 AIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMN 581
Query: 96 GLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERR 155
G M ML G L + ++K +P+A+ Y L+ + + M +
Sbjct: 582 GFCMLGMLEDGDRLLGW----MLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQ 637
Query: 156 GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA 215
G+ + Y L + C A +EA ++ + P V SY LI+ I A
Sbjct: 638 GVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEA 697
Query: 216 AYIFNQMK 223
+F +M+
Sbjct: 698 RELFEEMR 705
>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
Length = 457
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 126/295 (42%), Gaps = 35/295 (11%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V Y ++ L +AG ++E +++ M++ PD+V Y++ +
Sbjct: 186 DVVTYNTLMDGLCKAGRLQEAEQLLERMKA---------------SGCAPDVVAYSSFVY 230
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS--YI 123
+ + A VL+Q++ P+ TY +++ + GK + E ++ S
Sbjct: 231 GLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCG 290
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + Y +V+ L + G+T EA S +E M R G Y L LC AGK EEA+
Sbjct: 291 LNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEA 350
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM------KNFCSPNLVTCNIMV 237
+ ++ KP V+Y L+ G + A + +M + C P++ T N ++
Sbjct: 351 VREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALI 410
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+ G ++A+K FQ M PD +++T+++ A R
Sbjct: 411 GGLCKAGRIDDALKFFQRMRSQGCD------------PDGVSYSTIVEGLARSGR 453
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 123/278 (44%), Gaps = 10/278 (3%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++ D+V YN +++ + + + A +L+++K G P Y + + GK +
Sbjct: 183 VKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAH 242
Query: 113 EFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG-SAALYYDLARC 170
+ +++ S + PN + Y +++ L + GK D A+ +E M G + Y +
Sbjct: 243 QVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDG 302
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
LC G+ +EA M+ + + +P VV+Y+ L+ +G I+ A +M C PN
Sbjct: 303 LCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPN 362
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
VT +V G EA ++ +EM+ + P + T+N ++
Sbjct: 363 AVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDH-------CPPSVSTYNALIGGLCK 415
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
R DD ++RM G + + ++ +R+G+
Sbjct: 416 AGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGR 453
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 130/299 (43%), Gaps = 26/299 (8%)
Query: 46 LERW-------------DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSA 92
LERW R PD+V Y+ +L+ + + E + +L+++ +G +P A
Sbjct: 58 LERWHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDA 117
Query: 93 TTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVED 151
Y VM + + E + ++ P + + L++ RE + A S ++
Sbjct: 118 LMYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQT 177
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
M G+ Y L LC AG+ +EA ++++ P VV+Y+ + SG
Sbjct: 178 MAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGK 237
Query: 212 IQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270
+ NA + QM++ PN+VT N ++ + G + A+++ ++MA D
Sbjct: 238 VLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASS--------DGC 289
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
GL ++ ++T++D R + V + M G + + ++ +AGK+E
Sbjct: 290 GL---NVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIE 345
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 95/253 (37%), Gaps = 57/253 (22%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD VAY S L ++G + V++ MR D +P++V YN +L
Sbjct: 220 PDVVAYSSFVYGLCKSGKVLNAHQVLEQMR---------------DSDHDPNVVTYNTIL 264
Query: 65 NACVRRKQWEGAFWVLQQL-KQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
+ + + + A +++Q+ G + Y V++ + G+ + ++
Sbjct: 265 DGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGC 324
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS--------- 173
P+ + Y LVN L + GK +EAV AV +M G +A Y L LCS
Sbjct: 325 RPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAER 384
Query: 174 -------------------------------AGKCEEALMQMDKICKVANKPLVVSYTGL 202
AG+ ++AL ++ P VSY+ +
Sbjct: 385 MVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTI 444
Query: 203 IQACLDSGNIQNA 215
++ SG A
Sbjct: 445 VEGLARSGRALQA 457
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 88/243 (36%), Gaps = 50/243 (20%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL------------ 171
PN++ + LVN ++G+ + +E M RGI + Y L L
Sbjct: 8 PNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAEEL 67
Query: 172 -------------------------CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
C AGK EE+ + ++ +P + YT ++ +
Sbjct: 68 VRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASL 127
Query: 207 LDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
S + A + +M + C P L+T N ++ E A L Q MA
Sbjct: 128 CKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASG----- 182
Query: 266 EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRA 325
V D+ T+NT++D R + E + +RM G + + + ++
Sbjct: 183 -------VKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKS 235
Query: 326 GKV 328
GKV
Sbjct: 236 GKV 238
>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Cucumis sativus]
Length = 581
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 154/353 (43%), Gaps = 35/353 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +Y ++ +A I V D MRS + F PD+V YN ++
Sbjct: 129 PDVYSYNAMISGFSKANQIDSANQVFDRMRS---RGFS------------PDVVTYNIMI 173
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ R + E AF V+ +L + G KPS TY +++E + G+ N E F + V +
Sbjct: 174 GSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLR 233
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y ++ + +EG D A+ V + RG Y L R + + E+
Sbjct: 234 PDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERL 293
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
M + +P VV+++ LI + G ++ A + MK +P+ + + ++ A+ +
Sbjct: 294 MKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCK 353
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL-VYK 301
G + A++ ++M D +PDI +NT+L A + DL L V++
Sbjct: 354 EGRLDLAIEYLEKMVSDG------------CLPDIVNYNTIL-ATLCKFGCADLALDVFE 400
Query: 302 RMLHHGLHFNAKRHLRMILDASRAG-KVELLEITWEHLARA---DRITPPALI 350
++ G + + M G K++ LE+ E + + D IT +LI
Sbjct: 401 KLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLI 453
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 118/243 (48%), Gaps = 14/243 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD+ YNA+++ + Q + A V +++ +G P TY +++ + + GK L +E
Sbjct: 128 DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFE 187
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++ K P+ + Y +L+ EG+ +EA+ +++ RG+ Y + R +C
Sbjct: 188 VMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGIC 247
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLV 231
G + AL + + P VVSY L+++ L+ ++ + M + C PN+V
Sbjct: 248 KEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVV 307
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T +I++ ++ G EA+ + + M E KGL PD Y+++ ++ A E
Sbjct: 308 THSILISSFCREGRVREAVNVLEVMKE-----------KGLT-PDSYSYDPLISAFCKEG 355
Query: 292 RWD 294
R D
Sbjct: 356 RLD 358
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 125/298 (41%), Gaps = 18/298 (6%)
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY 122
+LN R + + + L+ + +G KP +++ ++
Sbjct: 68 LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG 127
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ +Y +++ + + D A + M RG Y + LCS GK E A
Sbjct: 128 DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFE 187
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
MD++ K KP V++YT LI+A + G I A +F+++ P+L T N +++
Sbjct: 188 VMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGIC 247
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G+ + A+ + ++ + PD+ ++N +L + + RW+D E + K
Sbjct: 248 KEGMEDRALDFVRHLSARGCN------------PDVVSYNILLRSFLNKSRWEDGERLMK 295
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVE----LLEITWEHLARADRITPPALIKERFC 355
M+ G N H +I R G+V +LE+ E D + LI FC
Sbjct: 296 DMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISA-FC 352
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/376 (21%), Positives = 157/376 (41%), Gaps = 48/376 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM-RSLPKKKFKTGT---------------LER 48
PD V Y + +L G ++ F+V+D + + K T T LE
Sbjct: 164 PDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALEL 223
Query: 49 WDP----RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+D L PD+ YNA++ + + A ++ L +G P +Y +++ L
Sbjct: 224 FDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLN 283
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
++ + + S PN + + +L+++ REG+ EAV+ +E M+ +G+ +
Sbjct: 284 KSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYS 343
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L C G+ + A+ ++K+ P +V+Y ++ G A +F ++
Sbjct: 344 YDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLD 403
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE---DSNHINREY------------ 267
C P + N M A G +A+++ EM D + I
Sbjct: 404 EVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVD 463
Query: 268 DKKGLVI--------PDIYTFN-TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRM 318
+ GL++ P + +FN +L C A + ++ +EL+ M+ G N ++ +
Sbjct: 464 EAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLIT-MVEKGCLPNETSYVLL 522
Query: 319 ILDASRAG-KVELLEI 333
I + AG + E +E+
Sbjct: 523 IEGIAYAGWRAEAMEL 538
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 75/178 (42%), Gaps = 27/178 (15%)
Query: 5 PDTVAYRSIAVTL---GQAGHIKELFDVIDSMRSLPK-KKFKTGTLERWD---------- 50
PD V Y +I TL G A ++F+ +D + P + + T W
Sbjct: 374 PDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEM 433
Query: 51 ------PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
++PD + YN++++ R + A +L ++ +P+ ++ +V+ L
Sbjct: 434 ISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVL---LG 490
Query: 105 CGKYNLVYE----FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
K + V+E V+K +PN +Y +L+ + G EA+ + R G++
Sbjct: 491 MCKAHRVFEGIELLITMVEKGCLPNETSYVLLIEGIAYAGWRAEAMELANSLYRLGVI 548
>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
Length = 669
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 81/367 (22%), Positives = 155/367 (42%), Gaps = 41/367 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y + + + ++ V+D MR+ K T P+IV YN ++
Sbjct: 176 PNVVTYTVLLEAMCRNSGFEQAMAVLDEMRA------KGCT---------PNIVTYNVII 220
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N R + + A +L +L G +P +Y +++ + A +++ V E F ++ +K+ +
Sbjct: 221 NGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCM 280
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + +L+ R G + A+ +E M G + L + +C G+ ++A
Sbjct: 281 PNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKL 340
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + P +SYT +++ + +A + N+M +N C PN VT N + +
Sbjct: 341 LNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQ 400
Query: 243 HGLFEEAMKLFQEMAEDS------------------NHINR--EYDKKGLVIPDIYTFNT 282
GL E+A+ L ++M+E HI+ E + P+ T+ T
Sbjct: 401 KGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTT 460
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG----KVELLEITWEHL 338
+L +R D + ML N ++ + G +EL+E EH
Sbjct: 461 LLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHG 520
Query: 339 ARADRIT 345
+ IT
Sbjct: 521 CTPNLIT 527
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/371 (20%), Positives = 161/371 (43%), Gaps = 50/371 (13%)
Query: 5 PDTVAYRSIAVTLGQAGH---IKELFDVIDSMRSLPKK-------KF--KTGTLERWDPR 52
PDTV+Y ++ L + ++ELF + +P + +F + G +ER
Sbjct: 246 PDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQV 305
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
LE + + N V+N+ ++ + + AF +L + G P +Y V++ +
Sbjct: 306 LEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCR 365
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
+++ E + V+ + PN + + + L ++G ++A+ +E M G
Sbjct: 366 AERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVT 425
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y L C G + AL + KP ++YT L+ ++ + AA + +M
Sbjct: 426 YNALVNGFCVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAERLDGAAELVAEML 482
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM------------------------AE 258
+ C PN+VT N++V + + G EEA++L ++M +E
Sbjct: 483 RGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSE 542
Query: 259 DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRM 318
D+ + KG V PD+ TF++++ + E R ++ ++ + G+ A + ++
Sbjct: 543 DALELLHGLVSKG-VSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKI 601
Query: 319 ILDASRAGKVE 329
+L + +++
Sbjct: 602 LLGLCKRCEID 612
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/364 (19%), Positives = 135/364 (37%), Gaps = 66/364 (18%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+ + ++ RR + A VL+ + G Y ++ G +
Sbjct: 74 PDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRL 133
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ + P+A Y L+ L G+ +A+S ++DM RRG + Y L +C
Sbjct: 134 IGSMPVA--PDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRN 191
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF--------- 225
E+A+ +D++ P +V+Y +I G + +A + N++ ++
Sbjct: 192 SGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSY 251
Query: 226 ---------------------------CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
C PN VT +++++ + G+ E A+++ ++M E
Sbjct: 252 TTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTE 311
Query: 259 DS--------NHINREYDKKGLVI---------------PDIYTFNTMLDACAAEKRWDD 295
N + K+G V PD ++ T+L +RWDD
Sbjct: 312 HGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDD 371
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLEITWEHLARADRITPPALIK 351
+ + M+ + N I + G +E L+E EH +T AL+
Sbjct: 372 AKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVN 431
Query: 352 ERFC 355
FC
Sbjct: 432 G-FC 434
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/248 (18%), Positives = 98/248 (39%), Gaps = 20/248 (8%)
Query: 8 VAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNAC 67
V Y ++ GHI ++ RS+P K P+ + Y +L
Sbjct: 424 VTYNALVNGFCVQGHIDSALELF---RSMPCK---------------PNTITYTTLLTGL 465
Query: 68 VRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIPNA 126
++ +GA ++ ++ + P+ T+ +++ G E ++ + PN
Sbjct: 466 CNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNL 525
Query: 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK 186
+ Y L++ + ++ +++A+ + + +G+ + + L + EEA+
Sbjct: 526 ITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHV 585
Query: 187 ICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGL 245
+ + +P V Y ++ I NA F M N C PN T I+++ GL
Sbjct: 586 VQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGL 645
Query: 246 FEEAMKLF 253
+EA L
Sbjct: 646 LKEAQDLL 653
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 102/261 (39%), Gaps = 26/261 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V + + L Q G I++ +I+ M + G +V YNA++
Sbjct: 386 PNEVTFNTFICILCQKGLIEQAIMLIEQMS---EHGCTVG------------VVTYNALV 430
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC----GKYNLVYEFFRKVQK 120
N + + A L+ + KP+ TY ++ + G LV E R
Sbjct: 431 NGFCVQGHIDSA---LELFRSMPCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRG--- 484
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
PN + + VLV+ ++G +EA+ VE M G + Y L + E+A
Sbjct: 485 DCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDA 544
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
L + + P V++++ +I I+ A +F+ +++ P V N ++
Sbjct: 545 LELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLG 604
Query: 240 YLEHGLFEEAMKLFQEMAEDS 260
+ + A+ F M +
Sbjct: 605 LCKRCEIDNAIDFFAYMVSNG 625
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG-LVMEVMLACGKYNLV 111
+ PD++ +++++ + + E A + ++ G +P A Y +++ + C N +
Sbjct: 556 VSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAI 615
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
F V +PN Y +L+ L EG EA + + RG++
Sbjct: 616 DFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEAQDLLSVLCSRGVL 662
>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
Length = 691
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 133/299 (44%), Gaps = 14/299 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P V+YN ++N + + EGAF Q+K + KP TY ++ + +
Sbjct: 371 LVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQ 430
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ ++Q + + P + L++ R G+ ++ + +M+ G+ + Y +
Sbjct: 431 DLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF 490
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C GK EA+ +D + P Y +I A ++ G A + +MK N SP++
Sbjct: 491 CKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSI 550
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N+++K EA ++ + SNH +IPD ++NT++ AC
Sbjct: 551 VTYNLLIKGLCNQSQISEAEEIINSL---SNH---------RLIPDAVSYNTLISACCYR 598
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPAL 349
D + +RM +G+ + + ++I AG++ +E ++ + + + + A+
Sbjct: 599 GNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAI 657
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 131/308 (42%), Gaps = 34/308 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ L +A I D++ +E D + P + +N ++
Sbjct: 408 PDHITYNALINGLCKAERITNAQDLL---------------MEMQDNGVNPTVETFNTLI 452
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+A R Q E F VL ++++ G KP+ +YG ++ GK + K +
Sbjct: 453 DAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVL 512
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PNA Y +++ G D+A VE M+ GI S Y L + LC+ + EA
Sbjct: 513 PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEI 572
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV-TCNIMVKAYLE 242
++ + P VSY LI AC GNI A + +M + + V T + ++
Sbjct: 573 INSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGG 632
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA---EKRWDDL--E 297
G E L+Q+M +++ V+P N M++A + E + +DL E
Sbjct: 633 AGRLNEMEYLYQKMMQNN------------VVPSNAIHNIMVEAYSKYGNEIKAEDLRKE 680
Query: 298 LVYKRMLH 305
++ KR H
Sbjct: 681 MLQKRNNH 688
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/326 (21%), Positives = 128/326 (39%), Gaps = 29/326 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ +Y + + +AG + +V D M ER + P+ + YN ++
Sbjct: 198 PNAFSYNVVIAGMWRAGRGGDAVEVFDEMT------------ERA---VLPNHITYNTMI 242
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ ++ E F + Q+ G KP+A TY +++ + G+ ++ + +
Sbjct: 243 DGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMV 302
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y +L + L R G + +S + G+ L LC GK A
Sbjct: 303 PDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEV 362
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+ + P V Y LI +G ++ A F QMK+ P+ +T N ++ +
Sbjct: 363 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 422
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
A L EM ++ V P + TFNT++DA + + +V
Sbjct: 423 AERITNAQDLLMEMQDNG------------VNPTVETFNTLIDAYGRTGQLEKCFIVLSE 470
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV 328
M +GL N + ++ + GK+
Sbjct: 471 MQENGLKPNVVSYGSIVNAFCKNGKI 496
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/301 (19%), Positives = 124/301 (41%), Gaps = 26/301 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNLVYE 113
PD +N + ACV A +L+++ + G P+A +Y +V+ M G+ E
Sbjct: 162 PDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVE 221
Query: 114 FFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F ++ +++ +PN + Y +++ + G + + M G+ +A Y L LC
Sbjct: 222 VFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLC 281
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLV 231
AG+ E +D++ P +Y+ L +G+ + +F + +KN +
Sbjct: 282 RAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDY 341
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKG------------ 271
TC+I++ + G A ++ Q + N + Y + G
Sbjct: 342 TCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQM 401
Query: 272 ---LVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+ PD T+N +++ +R + + + M +G++ + +I R G++
Sbjct: 402 KSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQL 461
Query: 329 E 329
E
Sbjct: 462 E 462
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/304 (21%), Positives = 124/304 (40%), Gaps = 32/304 (10%)
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+A VRR AF +L G +P + ++ +A G R++ + P
Sbjct: 145 HADVRR-----AFGIL---ASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAP 196
Query: 125 --NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
NA +Y V++ +WR G+ +AV ++M R ++ + Y + G E
Sbjct: 197 PPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFR 256
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYL 241
D++ KP ++Y L+ +G + + + ++M + P+ T +I+
Sbjct: 257 LRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLS 316
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+G + + LF +Y K G+ I D YT + +L+ + + E V +
Sbjct: 317 RNGDSKAMLSLFG-----------KYLKNGVTIGD-YTCSILLNGLCKDGKVSIAEEVLQ 364
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA----RADRITPPALIK-----E 352
+++ GL + +I + G++E T+ + + D IT ALI E
Sbjct: 365 SLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAE 424
Query: 353 RFCN 356
R N
Sbjct: 425 RITN 428
>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
Length = 592
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 118/258 (45%), Gaps = 17/258 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y I G G + ++ DSM + +EP+I+ YN ++
Sbjct: 316 PDVITYNMIIDGYGLRGQVDRAREIFDSM---------------INKSIEPNIISYNILI 360
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N R+K+ + A V +++ Q+G KPS T +++ + G+ FF + + +I
Sbjct: 361 NGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHI 420
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + L+ ++ G +EA+S +ERR + +Y + LC GK ++A
Sbjct: 421 PDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHAT 480
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+K+ + P V++YT +I G + A + +M+ N C + T N++V+ +L
Sbjct: 481 FEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLR 540
Query: 243 HGLFEEAMKLFQEMAEDS 260
E +E+A S
Sbjct: 541 SNKVSEMKAFLEEIAGKS 558
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 124/292 (42%), Gaps = 17/292 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP+ V+Y V+N ++ + AF +L+ ++Q KP+ Y +V++ G +
Sbjct: 175 EPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGATS 234
Query: 114 FFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++ QKS P+ Y L++ L + + + + +M I + + + LC
Sbjct: 235 LLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLC 294
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLV 231
GK E+A M + + P V++Y +I G + A IF+ M N PN++
Sbjct: 295 KEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNII 354
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
+ NI++ Y +EAM+ + RE +KGL P I T N +L
Sbjct: 355 SYNILINGYARQKKIDEAMQ-----------VCREISQKGLK-PSIVTCNVLLHGLFELG 402
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADR 343
R + + ML G + H ++ + G L+E H + +R
Sbjct: 403 RTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNG---LVEEAMSHFHKLER 451
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/380 (21%), Positives = 159/380 (41%), Gaps = 45/380 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR-----------SLPKKKF-KTGTL------ 46
P+ V Y ++ L + GH ++ FD++ M S+ F K G L
Sbjct: 176 PNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSL 235
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E + PDI Y+ +++A + QWE + ++ P+ T+ V++ +
Sbjct: 236 LNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCK 295
Query: 105 CGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK E R ++K P+ + Y ++++ G+ D A + M + I +
Sbjct: 296 EGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIIS 355
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L K +EA+ +I + KP +V+ L+ + G ++A F++M
Sbjct: 356 YNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEML 415
Query: 224 NFCS-PNLVTCNIMVKAYLEHGLFEEAMKLFQEMA---EDSN------------------ 261
+ P+L T ++ Y ++GL EEAM F ++ ED+N
Sbjct: 416 SAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLD 475
Query: 262 HINREYDKKGLV--IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
+ ++K L+ PD+ T+ M+ E D+ + + ++M +G + + + ++
Sbjct: 476 KAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIV 535
Query: 320 LDASRAGKVELLEITWEHLA 339
R+ KV ++ E +A
Sbjct: 536 RGFLRSNKVSEMKAFLEEIA 555
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 123/262 (46%), Gaps = 15/262 (5%)
Query: 71 KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP-NALAY 129
K + AF + +Q+ + PS ++ +++ ++ Y+ V FR++ K IP +
Sbjct: 51 KCLDDAFSLFRQMVRTKPLPSVVSFSKLLKALVHMKHYSSVVSLFREIHKLRIPVHEFIL 110
Query: 130 KVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK 189
++VN+ +TD S + ++GI + ++ L R L + K ++A+ K+ +
Sbjct: 111 SIVVNSCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKKLVR 170
Query: 190 V-ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEHGLFE 247
+P V Y ++ G+ Q A + M+ + PN +I++ A+ + G+ +
Sbjct: 171 ENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLD 230
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
A L EM + S + PDI+T++T++DA +W+++ ++ M+H
Sbjct: 231 GATSLLNEMKQKS------------IPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLN 278
Query: 308 LHFNAKRHLRMILDASRAGKVE 329
++ N +I + GKVE
Sbjct: 279 IYPNVCTFNSVIDGLCKEGKVE 300
>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05670, mitochondrial-like [Cucumis sativus]
Length = 748
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 133/306 (43%), Gaps = 29/306 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ + GH++ D M S ++ PD + Y ++
Sbjct: 361 PDNVVYTTLIHGFFKLGHVRTANKWFDEMLS---------------KKISPDYITYTTLI 405
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + ++ +G KP TY +++V G+ + + VQ
Sbjct: 406 QGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMT 465
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L++ L + G+ D A +++M ++G+ + +Y + +C AG E+A+
Sbjct: 466 PNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKL 525
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
M ++ P ++YT +I A G+I A + +M + P +VT N+++ +
Sbjct: 526 MKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCM 585
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G+ E+ +L M E KG+V PD T+NT++ + +YKR
Sbjct: 586 LGMLEDGDRLLGWMLE-----------KGIV-PDAITYNTLMKQHCIRNSMNTTTKIYKR 633
Query: 303 MLHHGL 308
M + G+
Sbjct: 634 MRNQGV 639
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/353 (19%), Positives = 138/353 (39%), Gaps = 48/353 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ +A+ L + GH+ E ++D + L +VV
Sbjct: 188 PNPIAFDIFFQVLVEIGHLSEARKLLDKL-------------------LSYGLVVTVDSC 228
Query: 65 NACVRR--KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KS 121
NA + R EG ++ + G + T+Y +++ + GK + ++ +S
Sbjct: 229 NAFLSRIANNSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRS 288
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
P+ ++Y +++ G+ +A+ ++DM+ +G+ + Y + LC GK EA
Sbjct: 289 STPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAE 348
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
+ ++ P V YT LI G+++ A F++M SP+ +T +++ +
Sbjct: 349 KVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGF 408
Query: 241 LEHGLFEEAMKLFQEMAE------------------------DSNHINREYDKKGLVIPD 276
+ G E LF EM ++ ++ E + G+ P+
Sbjct: 409 GQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMT-PN 467
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
I T+ ++D D + M GL N + M+ +AG +E
Sbjct: 468 IVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIE 520
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 98/248 (39%), Gaps = 29/248 (11%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLER 48
M P+ V Y ++ L + G + +++D MR S+ K G +E+
Sbjct: 462 MGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQ 521
Query: 49 WD--------PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY----- 95
++PD + Y V++A R + A +LQ++ +G +P+ T+
Sbjct: 522 AIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMN 581
Query: 96 GLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERR 155
G M ML G L + ++K +P+A+ Y L+ + + M +
Sbjct: 582 GFCMLGMLEDGDRLLGW----MLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQ 637
Query: 156 GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA 215
G+ + Y L + C A +EA ++ + P V SY LI+ A
Sbjct: 638 GVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEA 697
Query: 216 AYIFNQMK 223
+F +M+
Sbjct: 698 RELFEEMR 705
>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
Length = 558
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 120/253 (47%), Gaps = 14/253 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP IV +++LN K+ A ++ Q+ + G +P T+ ++ + K +
Sbjct: 76 EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 135
Query: 114 FF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R VQ+ PN + Y V+VN L + G D A + + ME I ++ + LC
Sbjct: 136 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLC 195
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
++AL ++ +P VV+Y+ LI G +A+ + + M + +PNLV
Sbjct: 196 KYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 255
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ A+++ G F EA KL +M I R D PDI+T+N++++
Sbjct: 256 TFNALIDAFVKEGKFVEAEKLHDDM------IKRSID------PDIFTYNSLINGFCMHD 303
Query: 292 RWDDLELVYKRML 304
R D + +++ M+
Sbjct: 304 RLDKAKQMFEFMV 316
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/327 (19%), Positives = 143/327 (43%), Gaps = 29/327 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y + L + G I F++++ M + ++E D+V++N ++
Sbjct: 147 PNLVTYGVVVNGLCKRGDIDLAFNLLNKMEA---------------AKIEADVVIFNTII 191
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
++ + + + A + ++++ +G +P+ TY ++ + + G+++ + ++K
Sbjct: 192 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN 251
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + L++ +EGK EA +DM +R I Y L C + ++A
Sbjct: 252 PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 311
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+ + P + +Y LI+ S +++ +F +M + + VT +++
Sbjct: 312 FEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 371
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + A K+F++M D V PDI T++ +LD + + V+
Sbjct: 372 DGDCDNAQKVFKQMVSDG------------VPPDIMTYSILLDGLCNNGKLEKALEVFDY 419
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
M + + + MI +AGKV+
Sbjct: 420 MQKSEIKLDIYIYTTMIEGMCKAGKVD 446
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 112/278 (40%), Gaps = 57/278 (20%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLA 104
+ ++ P++V +NA+++A V+ ++ A + + ++ P TY G M L
Sbjct: 247 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRL- 305
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
K ++EF V K P+ Y L+ + + ++ +M RG+VG Y
Sbjct: 306 -DKAKQMFEFM--VSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 362
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
L + L G C+ A ++ P +++Y+ L+ ++G ++ A +F+ M+
Sbjct: 363 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 422
Query: 225 -----------------------------FCS-------PNLVTCNIMVKAYLEHGLFEE 248
FCS PN+VT N M+ L +E
Sbjct: 423 SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQE 482
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
A L ++M ED +PD T+NT++ A
Sbjct: 483 AYALLKKMKEDGP------------LPDSGTYNTLIRA 508
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 9/210 (4%)
Query: 24 KELFDVIDSMRSLPK-----KKFKTGT---LERWDPRLEPDIVVYNAVLNACVRRKQWEG 75
K+ F +D+ +L K K+ + GT E L D V Y ++ +
Sbjct: 318 KDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDN 377
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP-NALAYKVLVN 134
A V +Q+ G P TY ++++ + GK E F +QKS I + Y ++
Sbjct: 378 AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIE 437
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194
+ + GK D+ + +G+ + Y + LCS +EA + K+ + P
Sbjct: 438 GMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLP 497
Query: 195 LVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
+Y LI+A L G+ +A + +M++
Sbjct: 498 DSGTYNTLIRAHLRDGDKAASAELIREMRS 527
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/161 (19%), Positives = 71/161 (44%), Gaps = 20/161 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLER-WD- 50
PD + Y + L G +++ +V D M+ ++ + K G ++ WD
Sbjct: 392 PDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 451
Query: 51 ------PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
++P++V YN +++ ++ + A+ +L+++K+ G P + TY ++ L
Sbjct: 452 FCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLR 511
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEA 145
G E R+++ + LV + +G+ D++
Sbjct: 512 DGDKAASAELIREMRSCRFVGDASTIGLVANMLHDGRLDKS 552
>gi|255660960|gb|ACU25649.1| pentatricopeptide repeat-containing protein [Verbena halei]
Length = 376
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 138/283 (48%), Gaps = 15/283 (5%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ ++ PD VVYNA+LN R + + F + + + +G + S +++ ++M + GK +
Sbjct: 18 ESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNGKVD 76
Query: 110 LVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
V + +++S ++ +++ Y +LV+ + G D+++ +E E++G V A Y +
Sbjct: 77 EVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMI 136
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CS 227
LC + AL ++ + K KP V Y LI + + ++A +F +M CS
Sbjct: 137 NGLCKEANLDRALSVLNDMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCS 196
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P ++T N ++ ++ +F EA L +E+ + KGL P + T++ ++
Sbjct: 197 PTIITYNTLINGLCKNEMFGEAYNLVKELLD-----------KGLD-PGVITYSMLMKGL 244
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ R + ++ ++ G + + H +I GK++L
Sbjct: 245 CLDHRVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQL 287
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/137 (19%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D L+P ++ Y+ ++ + E A + Q+ +G KP + +++ + + G
Sbjct: 224 ELLDKGLDPGVITYSMLMKGLCLDHRVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVG 283
Query: 107 KYNLVYE-FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K L +F PN +++ L+ +++G A+ + R G+ Y
Sbjct: 284 KMQLALSLYFDMNHWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343
Query: 166 DLARCLCSAGKCEEALM 182
+ LCS + +A++
Sbjct: 344 ITLKGLCSCNRISDAIL 360
>gi|356571194|ref|XP_003553764.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g04760, chloroplastic-like [Glycine max]
Length = 531
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 71/316 (22%), Positives = 136/316 (43%), Gaps = 27/316 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y SI + + + G++ F+VI S+ S K + D++ YN +L
Sbjct: 192 PDVFPYNSI-IXMCREGYVDRAFEVISSISS---KGYAL------------DVITYNILL 235
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + +WE F ++ + +G + + TY +++ + GK + ++K +
Sbjct: 236 RSLXNQGKWEAGFELMSDMVAKGCEANVVTYSVLISSLCRDGKVEEGVGLLKDMKKKGLE 295
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y L+ L +EG+ D A+ ++ M G V Y + CLC + +EAL
Sbjct: 296 PDGYCYDPLIAVLCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSI 355
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
+K+ +V P SY + A SG+ A + +M + P+++ N ++
Sbjct: 356 FEKLGEVGCSPNASSYNTVFSALGSSGHKVRALGMILEMLDXVDPDVIAYNSLISCLCRD 415
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G+ +EA++L +M +S+ P + ++N +L R D V M
Sbjct: 416 GMVDEAIELLVDMEMESSECK----------PSVVSYNIVLLGLCRVGRVSDATEVLAAM 465
Query: 304 LHHGLHFNAKRHLRMI 319
+ G N + +I
Sbjct: 466 VDKGCLPNETTYTFLI 481
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 125/294 (42%), Gaps = 33/294 (11%)
Query: 5 PDTVAYRS-IAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
P V Y I TL Q G I E ++D M ++ L+PD+ YN++
Sbjct: 157 PTVVTYTILIEATLLQGG-IDEAIKLLDEM---------------FEINLQPDVFPYNSI 200
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSY 122
+ C R + AF V+ + +G TY +++ + GK+ +E V K
Sbjct: 201 IXMC-REGYVDRAFEVISSISSKGYALDVITYNILLRSLXNQGKWEAGFELMSDMVAKGC 259
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
N + Y VL+++L R+GK +E V ++DM+++G+ Y L LC G+ + A+
Sbjct: 260 EANVVTYSVLISSLCRDGKVEEGVGLLKDMKKKGLEPDGYCYDPLIAVLCKEGRVDLAIE 319
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYL 241
+D + P +V+Y ++ A IF ++ CSPN + N + A
Sbjct: 320 VLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNTVFSALG 379
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
G A+ + EM + V PD+ +N+++ + D+
Sbjct: 380 SSGHKVRALGMILEMLD-------------XVDPDVIAYNSLISCLCRDGMVDE 420
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 127/319 (39%), Gaps = 31/319 (9%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDIV YN ++ + R A QL ++ P+ TY +++E L G + +
Sbjct: 122 PDIVTYNILIGSLCSRGMLHAALEFKNQLLKENFNPTVVTYTILIEATLLQGGIDEAIKL 181
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ + + P+ Y ++ + REG D A + + +G Y L R L +
Sbjct: 182 LDEMFEINLQPDVFPYNSII-XMCREGYVDRAFEVISSISSKGYALDVITYNILLRSLXN 240
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
GK E M + + VV+Y+ LI + G ++ + M K P+
Sbjct: 241 QGKWEAGFELMSDMVAKGCEANVVTYSVLISSLCRDGKVEEGVGLLKDMKKKGLEPDGYC 300
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+ ++ + G + A+++ M D +PDI +NT+L +KR
Sbjct: 301 YDPLIAVLCKEGRVDLAIEVLDVMISDG------------CVPDIVNYNTILACLCKQKR 348
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG-KVELLEITWEHLARADRITPPALIK 351
D+ +++++ G NA + + +G KV L + E L D P +I
Sbjct: 349 ADEALSIFEKLGEVGCSPNASSYNTVFSALGSSGHKVRALGMILEMLDXVD----PDVIA 404
Query: 352 ERFCNRLENKDYGSAISCL 370
Y S ISCL
Sbjct: 405 -----------YNSLISCL 412
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 14/186 (7%)
Query: 145 AVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204
A ++ M+ +G Y L LCS G AL +++ K P VV+YT LI+
Sbjct: 108 AYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLHAALEFKNQLLKENFNPTVVTYTILIE 167
Query: 205 ACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
A L G I A + ++M P++ N ++ E G + A ++ ++
Sbjct: 168 ATLLQGGIDEAIKLLDEMFEINLQPDVFPYNSIIXMCRE-GYVDRAFEVISSIS------ 220
Query: 264 NREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDAS 323
KG + D+ T+N +L + + +W+ + M+ G N + +I
Sbjct: 221 -----SKGYAL-DVITYNILLRSLXNQGKWEAGFELMSDMVAKGCEANVVTYSVLISSLC 274
Query: 324 RAGKVE 329
R GKVE
Sbjct: 275 RDGKVE 280
>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
Length = 799
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 130/310 (41%), Gaps = 26/310 (8%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+ PDTV+Y + L +E +++ M + R P++V Y
Sbjct: 155 LGCMPDTVSYTILLKGLCNEKRAEEALELLHMMA------------DDHGRRCPPNVVSY 202
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQ 119
+ V+N Q + + + ++ +G P TY V++ + ++ F++ +
Sbjct: 203 SIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMID 262
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ PN Y L++ GK E V +E+M RG+ Y L LC G+C E
Sbjct: 263 NGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCRE 322
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A D + + KP V +Y LI G + + M +N SP+ NI
Sbjct: 323 ARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFS 382
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
AY + G+ ++AM +F +M + + P++ + ++DA R DD E+
Sbjct: 383 AYAKCGMIDKAMDIFNKMRQHG------------LSPNVVNYGALIDALCKLGRVDDAEV 430
Query: 299 VYKRMLHHGL 308
+ +M++ G+
Sbjct: 431 KFNQMINEGV 440
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/330 (21%), Positives = 129/330 (39%), Gaps = 35/330 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + + G I + D+ + MR L P++V Y A++
Sbjct: 372 PDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQ---------------HGLSPNVVNYGALI 416
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN----LVYEFFRKVQK 120
+A + + + A Q+ +G P+ + ++ + K+ LVYE + +
Sbjct: 417 DALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEM---LDQ 473
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
PNA+ + L+ L G+ E ++ ME G+ A Y L C G+ +EA
Sbjct: 474 GICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEA 533
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
D + + P V+Y L+ + I +A +F +M + +P +VT N ++
Sbjct: 534 EKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHG 593
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ F EA +L+ M DIYT+N +L+ D+ +
Sbjct: 594 LFQTKRFSEAKELYLNMINSGTKC------------DIYTYNIILNGLCKSNCVDEAFKM 641
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++ + GL N MI + G+ E
Sbjct: 642 FQSLCSKGLQLNIITFTIMIGALLKGGRKE 671
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/384 (20%), Positives = 145/384 (37%), Gaps = 82/384 (21%)
Query: 5 PDTVAYRSIAVTLGQA-------GHIKELFD------------VIDSMRSLPKKKFKTGT 45
PD V Y ++ L +A G +++ D +I S+ K K
Sbjct: 232 PDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQM 291
Query: 46 LERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
LE R L+PD Y ++LN + + A + + ++G KP +TYG+++
Sbjct: 292 LEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYAT 351
Query: 105 CGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + ++ F V+ P+ + + + + G D+A+ M + G+ +
Sbjct: 352 KGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVN 411
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC----------------L 207
Y L LC G+ ++A ++ +++ P +V + L+ L
Sbjct: 412 YGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEML 471
Query: 208 DSGNIQNAAYIFNQMKNFCS--------------------PNLVTCNIMVKAYLEHGLFE 247
D G NA + + N C+ P+ + ++ Y G +
Sbjct: 472 DQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTD 531
Query: 248 EAMKLFQEMA------------------------EDSNHINREYDKKGLVIPDIYTFNTM 283
EA K+F M +D+ + RE +KG V P + T+NT+
Sbjct: 532 EAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKG-VTPGVVTYNTI 590
Query: 284 LDACAAEKRWDDLELVYKRMLHHG 307
L KR+ + + +Y M++ G
Sbjct: 591 LHGLFQTKRFSEAKELYLNMINSG 614
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 107/264 (40%), Gaps = 17/264 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V + ++ L G + E +ID M + + PD Y ++
Sbjct: 477 PNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVG---------------VRPDAFSYTPLI 521
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + A V + G P+ TY ++ + + + Y FR+ ++K
Sbjct: 522 SGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVT 581
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y +++ L++ + EA +M G Y + LC + +EA
Sbjct: 582 PGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKM 641
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+C + ++++T +I A L G ++A +F + N PN+VT ++ + +E
Sbjct: 642 FQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIE 701
Query: 243 HGLFEEAMKLFQEMAEDSNHINRE 266
G EE LF M ++ N +
Sbjct: 702 EGSLEEFDSLFSAMEKNGTAPNSQ 725
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 2/162 (1%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
DI YN +LN + + AF + Q L +G + + T+ +++ +L G+ + F
Sbjct: 618 DIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLF 677
Query: 116 RKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ +PN + Y+++ L EG +E S ME+ G ++ + L R L
Sbjct: 678 AAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHR 737
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
G A + K+ N + S T L+ + S Q+ A
Sbjct: 738 GDISRAGAYLSKL-DERNFSVEASTTSLLMSIFTSDEYQHHA 778
>gi|326514834|dbj|BAJ99778.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 609
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 138/311 (44%), Gaps = 35/311 (11%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V Y ++ L +AG ++++M+ +EP++V Y +
Sbjct: 235 DVVGYNTLVAGLCRAGEADAARGMLETMKG---------------DGVEPNVVTYTTFIA 279
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIP 124
C R + AF + +++ + G P T +++ + G+++ Y FR+++K P
Sbjct: 280 ECCRTNAVDDAFSLYEEMVRMGVLPDVVTLSALVDGLCRAGRFSEAYALFREMEKIGAAP 339
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N + Y L+++LW+ + E+ + ++ RG+V +Y L L GK +E
Sbjct: 340 NHVTYCTLIDSLWKARRGSESHGLLGEVVSRGVVMDLVMYTSLMDWLGKQGKIDEVKDMF 399
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEH 243
+ P V+YT LI A +GN+ A + +M++ PN+VT + ++ +
Sbjct: 400 HCALSDNHTPNGVTYTVLIDALCRAGNVDGAEQMLLEMEDKSVHPNVVTFSSIINGLTKQ 459
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA---CAAEKRWDDLELVY 300
GL +A ++M E R D P++ T+ T++D C ++ DL Y
Sbjct: 460 GLLGKAADYMRKMKE------RGID------PNVVTYGTVMDGFFKCQEQESALDL---Y 504
Query: 301 KRMLHHGLHFN 311
ML G+ N
Sbjct: 505 HEMLCEGVEVN 515
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/302 (20%), Positives = 129/302 (42%), Gaps = 28/302 (9%)
Query: 56 DIVVYNAVLNACVRRKQWEG-AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN---LV 111
D V YN V++ + + G A +L ++ ++G A T + + G+ +
Sbjct: 127 DTVSYNVVISGLTEQGRHGGLAPALLAEMCKRGVPFDAVTVNTALVALCRDGQVEGAAAL 186
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E + ++ + + + + L++ + G + A++A + M +G+ Y L L
Sbjct: 187 AEMMVRGREIHRLDVVGWNALLDGYCKSGDMEAALTAAQRMRTQGVGVDVVGYNTLVAGL 246
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C AG+ + A ++ + +P VV+YT I C + + +A ++ +M + P++
Sbjct: 247 CRAGEADAARGMLETMKGDGVEPNVVTYTTFIAECCRTNAVDDAFSLYEEMVRMGVLPDV 306
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEM---AEDSNHIN------------REYDKKGL--- 272
VT + +V G F EA LF+EM NH+ R + GL
Sbjct: 307 VTLSALVDGLCRAGRFSEAYALFREMEKIGAAPNHVTYCTLIDSLWKARRGSESHGLLGE 366
Query: 273 -----VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
V+ D+ + +++D + + D+++ ++ L N + +I RAG
Sbjct: 367 VVSRGVVMDLVMYTSLMDWLGKQGKIDEVKDMFHCALSDNHTPNGVTYTVLIDALCRAGN 426
Query: 328 VE 329
V+
Sbjct: 427 VD 428
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 21/174 (12%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFD-------------------VIDSM-RSLPKKKFKTGT 45
D V Y S+ LG+ G I E+ D +ID++ R+ +
Sbjct: 375 DLVMYTSLMDWLGKQGKIDEVKDMFHCALSDNHTPNGVTYTVLIDALCRAGNVDGAEQML 434
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
LE D + P++V +++++N ++ A ++++K++G P+ TYG VM+ C
Sbjct: 435 LEMEDKSVHPNVVTFSSIINGLTKQGLLGKAADYMRKMKERGIDPNVVTYGTVMDGFFKC 494
Query: 106 GKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ + + ++ + N +LVN L + GK +EA + DM +RG++
Sbjct: 495 QEQESALDLYHEMLCEGVEVNKFIVDLLVNGLRKNGKMEEAEALFRDMNKRGML 548
>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1246
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 144/329 (43%), Gaps = 29/329 (8%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
++P+ Y + G++ I +L+D+ MRS EP+ + +N
Sbjct: 826 GTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRS---------------RGCEPNAITHN 870
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQK 120
+++A V+ A + +L P+ TYG +++ +L G+ + F + +
Sbjct: 871 IIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDY 930
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
PN++ Y +L+N + G+ D A + M + GI Y L CLC G+ +EA
Sbjct: 931 GCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEA 990
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKA 239
+ +++ P VSY +I S + A +F++MKN SP+L T N ++
Sbjct: 991 VQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILH 1050
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
G + A+K+++E+ + E P ++T+N ++ + D V
Sbjct: 1051 LGIAGKVDVAVKMYEEL----QLVGLE--------PSVFTYNALIRGHSLSGNKDQAFSV 1098
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+K+M+ G N + ++ RAG V
Sbjct: 1099 FKKMMVVGCSPNTETFAQLPNKYPRAGLV 1127
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 147/328 (44%), Gaps = 31/328 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + L ++G + FD++D M + K F P++ YN ++
Sbjct: 373 PDVVTYTILIEALCKSGDVDRAFDMLDVMTT--KGIF-------------PNLHTYNTMI 417
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
++ ++ + A +L+ ++ G KP+A +Y L ++ G + F ++K I
Sbjct: 418 CGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIM 477
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ A + TL G+ EA D+ + G+ + Y L +C AG+ ++A
Sbjct: 478 PSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQL 537
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ ++ +P V+ LI +G + A +F ++KN +P +VT NI++ +
Sbjct: 538 LSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGK 597
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL-VYK 301
G +A++LF M E P+ TFN++LD C ++ DL L ++
Sbjct: 598 EGKILKALELFGSMTESG------------CPPNTITFNSLLD-CLSKNDAVDLALKMFC 644
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVE 329
RM + + + +I R G+++
Sbjct: 645 RMTMMNCNPDVLTYNTIIYGLIREGRID 672
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 111/257 (43%), Gaps = 16/257 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P A + TL + G I E D+ + + K G L PD V YN ++
Sbjct: 478 PSIAACNASLYTLAETGRISEAEDIFNDLH-------KCG--------LSPDSVTYNMLM 522
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ Q + A +L ++ +G +P ++ + G+ + ++ F +++ +
Sbjct: 523 KCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLA 582
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y +L+ L +EGK +A+ M G + + L CL + AL
Sbjct: 583 PTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKM 642
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
++ + P V++Y +I + G I A + F+QMK F SP+ VT ++ + H
Sbjct: 643 FCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMKKFLSPDYVTLCTLIPGVVRH 702
Query: 244 GLFEEAMKLFQEMAEDS 260
G E+A+K+ E +
Sbjct: 703 GRVEDAIKVVMEFVHQA 719
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/373 (20%), Positives = 145/373 (38%), Gaps = 67/373 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y ++ V LG+ G +++ ++++ M+S+ L P+I Y +
Sbjct: 233 PSMKTYSALMVALGRRGDTRKIMNLLEEMKSIG---------------LRPNIYTYTICI 277
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS--- 121
A R ++ + A+ + +++ +G P TY ++++ + A GK + E + K++ S
Sbjct: 278 RALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHS 337
Query: 122 ---------------------------------YIPNALAYKVLVNTLWREGKTDEAVSA 148
Y P+ + Y +L+ L + G D A
Sbjct: 338 PDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDM 397
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
++ M +GI + Y + L A + +EAL ++ + + KP SY I
Sbjct: 398 LDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGK 457
Query: 209 SGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
SG+ A F MK P++ CN + E G EA +F ++
Sbjct: 458 SGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDL----------- 506
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
K GL PD T+N ++ + + D + M+ G + +I +AG+
Sbjct: 507 HKCGLS-PDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGR 565
Query: 328 VELLEITWEHLAR 340
V + W+ R
Sbjct: 566 V---DAAWKMFGR 575
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 131/288 (45%), Gaps = 14/288 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P + YN +++ + E A + + +K G P+ TY L+++ + N +Y
Sbjct: 792 IHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLY 851
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ + +++ + PNA+ + ++++ L + ++A+ ++ + Y L L
Sbjct: 852 DLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGL 911
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
AG+ E+A+ +++ P V Y LI SG I A +F +M K P+L
Sbjct: 912 LKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDL 971
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+ I+V+ G +EA++ F+E+ K + PD ++N +++
Sbjct: 972 KSYTILVECLCITGRIDEAVQYFEEL------------KLTGLDPDTVSYNFIINGLGKS 1019
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
+R D+ ++ M + G+ + + +IL AGKV++ +E L
Sbjct: 1020 RRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEEL 1067
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 106/227 (46%), Gaps = 15/227 (6%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVN 134
A V +++ +G KPS TY +M + G + +++ + PN Y + +
Sbjct: 219 ALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIR 278
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194
L R + D+A ++M+ G Y L LC+AGK ++A K+ ++ P
Sbjct: 279 ALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSP 338
Query: 195 LVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253
V+Y L+ G+++ +N+M+ + +P++VT I+++A + G + A +
Sbjct: 339 DRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDML 398
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD-LELV 299
M KG + P+++T+NTM+ +R D+ LEL+
Sbjct: 399 DVMT-----------TKG-IFPNLHTYNTMICGLLKARRLDEALELL 433
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 78/375 (20%), Positives = 146/375 (38%), Gaps = 52/375 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL-------ERWDPRLE- 54
P V Y + LG+ G I + ++ SM P +L + D L+
Sbjct: 583 PTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKM 642
Query: 55 ----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
PD++ YN ++ +R + + AFW Q+K+ P T ++ ++
Sbjct: 643 FCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMKKF-LSPDYVTLCTLIPGVVR 701
Query: 105 CGKY----NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
G+ +V EF Q N+ + L+ + E + +EA+S E + +
Sbjct: 702 HGRVEDAIKVVMEFVH--QACLQTNSQFWGELMECILTEAEIEEAISFAEILVCNSVCQD 759
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICK-VANKPLVVSYTGLIQACLDSGNIQNAAYIF 219
+ L + LC K +A DK K + P + SY L+ L S + A +F
Sbjct: 760 DHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELF 819
Query: 220 NQMKNFCS-PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE------------------DS 260
MK+ + PN T N+++ A+ + + L+ EM S
Sbjct: 820 EDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKS 879
Query: 261 NHINREYD-----KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
N++N+ D G P T+ ++D R + +++ ML +G N+ +
Sbjct: 880 NNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIY 939
Query: 316 LRMILDASRAGKVEL 330
+I ++G+++
Sbjct: 940 NILINGFGKSGEIDF 954
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 17/265 (6%)
Query: 68 VRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK--SYIPN 125
+ R + V+ K++ K S + VM ++ + N + +F+ V + +++
Sbjct: 72 ITRCNHDNDLVVVNNGKRKKNKTSVSEEE-VMTILKSISDPNSAFSYFKIVSQLTNFVHT 130
Query: 126 ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMD 185
A ++ L + + ++ V + M+++ I + Y + + L G A +
Sbjct: 131 TDACNYMLEILREQRRIEDMVFVFDLMQKKVIYRNLTTYMTIFKALSIKGGIGRAPFALR 190
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHG 244
K+ +V SY GLI L G A ++ +M P++ T + ++ A G
Sbjct: 191 KMTEVGFILNAYSYNGLIHLLL-PGFCNEALKVYKRMISEGMKPSMKTYSALMVALGRRG 249
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
+ M L +EM K + P+IYT+ + A +R DD ++K M
Sbjct: 250 DTRKIMNLLEEM------------KSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMD 297
Query: 305 HHGLHFNAKRHLRMILDASRAGKVE 329
G + + +I AGK++
Sbjct: 298 DEGCGPDVITYTVLIDALCAAGKLD 322
>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
Length = 951
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 141/313 (45%), Gaps = 39/313 (12%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V Y S+ +G +V++ M++ +EP++V Y A++
Sbjct: 221 DVVGYNSLVAGFFHSGDADAALEVVERMKA---------------DGVEPNVVTYTALIG 265
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ K + AF + + + + G P T +++ + G+++ Y FR++ K + P
Sbjct: 266 EYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAP 325
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL--- 181
N + Y L+++L + + E++ + +M RG+V +Y L L GK EEA
Sbjct: 326 NHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVL 385
Query: 182 --MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
Q D I P V+YT L+ A +GNI A + QM + PN+VT + ++
Sbjct: 386 RHAQSDNI-----TPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIIN 440
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
++ G +A ++M +DS + P++ T+ T++D + +
Sbjct: 441 GLVKRGCLGKAADYMRKM-KDSG-----------IAPNVVTYGTLIDGFFKFQGQEAALD 488
Query: 299 VYKRMLHHGLHFN 311
VY+ MLH G+ N
Sbjct: 489 VYRDMLHEGVEAN 501
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 84/354 (23%), Positives = 150/354 (42%), Gaps = 38/354 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V Y ++ LG+ G I+E DV+ +S + P+ V Y +++
Sbjct: 361 DLVMYTALMDRLGKEGKIEEAKDVLRHAQS---------------DNITPNFVTYTVLVD 405
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
A R +GA VL Q++++ P+ T+ ++ ++ G ++ RK++ S I P
Sbjct: 406 AHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAP 465
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE--EALM 182
N + Y L++ ++ + A+ DM G+ + + L L G E EAL
Sbjct: 466 NVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALF 525
Query: 183 Q-MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ--MKNFCSPNLVTCNIMVKA 239
+ MD+ + + V+YT L+ +GN+ AA+ Q M+ SP+ V N+ +
Sbjct: 526 KDMDERGLLLDH---VNYTTLMDGLFKTGNMP-AAFKVGQELMEKNLSPDAVVYNVFINC 581
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
G F EA +EM + PD T+NTM+ A E + +
Sbjct: 582 LCTLGKFSEAKSFLKEMRNTG------------LEPDQATYNTMIAARCREGKTSKALKL 629
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKER 353
K M + + N + +++ AG V+ + +A A P +L +R
Sbjct: 630 LKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAG-FAPTSLTHQR 682
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 114/275 (41%), Gaps = 14/275 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D V Y +++ + AF V Q+L ++ P A Y + + + GK++ F
Sbjct: 536 DHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFL 595
Query: 116 RKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
++++ + + P+ Y ++ REGKT +A+ +++M+R I + Y L L A
Sbjct: 596 KEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEA 655
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCSPNLVTC 233
G ++A ++++ P +++ ++QAC S I M ++
Sbjct: 656 GVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVY 715
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N +V HG+ A + EM + PD TFN ++
Sbjct: 716 NTLVHVLCCHGMARNATVVLDEMLTRG------------IAPDTITFNALILGHCKSSHL 763
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
D+ +Y +MLH GL N ++ AG++
Sbjct: 764 DNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRI 798
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/313 (21%), Positives = 136/313 (43%), Gaps = 25/313 (7%)
Query: 41 FKTGTL--------ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSA 92
FKTG + E + L PD VVYN +N ++ A L++++ G +P
Sbjct: 548 FKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQ 607
Query: 93 TTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVED 151
TY ++ GK + + ++++++ I PN + Y LV L G +A + +
Sbjct: 608 ATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNE 667
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVAN-KPLVVSYTGLIQACLDSG 210
M G ++ + + + CS + + ++++ ++ A + Y L+ G
Sbjct: 668 MASAGFAPTSLTHQRVLQA-CSGSRRPDVILEIHELMMGAGLHADITVYNTLVHVLCCHG 726
Query: 211 NIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
+NA + ++M +P+ +T N ++ + + + A ++ +M
Sbjct: 727 MARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLH----------- 775
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILD-ASRAGKV 328
+GL P+I TFNT+L + R + + V M GL N + ++ A ++ KV
Sbjct: 776 QGLS-PNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKV 834
Query: 329 ELLEITWEHLARA 341
E L + E +++
Sbjct: 835 EALRLYCEMVSKG 847
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/359 (18%), Positives = 153/359 (42%), Gaps = 36/359 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ + + E F + + M ++G L PD+V +A++
Sbjct: 255 PNVVTYTALIGEYCKGKGMDEAFSLYEGM-------VRSGVL--------PDVVTLSALV 299
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ R Q+ A+ + +++ + G P+ TY +++ + + + + V + +
Sbjct: 300 DGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVV 359
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK---CEEA 180
+ + Y L++ L +EGK +EA + + I + Y L C AG E+
Sbjct: 360 MDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQV 419
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKA 239
L+QM++ + N VV+++ +I + G + AA +MK+ +PN+VT ++
Sbjct: 420 LLQMEEKSVIPN---VVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDG 476
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ + E A+ ++++M + N + +++++ + E +
Sbjct: 477 FFKFQGQEAALDVYRDMLHEGVEANN------------FVVDSLVNGLRKNGNIEGAEAL 524
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRL 358
+K M GL + + ++ + G + + L + ++P A++ F N L
Sbjct: 525 FKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKN-LSPDAVVYNVFINCL 582
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 16/161 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT+ + ++ + ++ H+ F + M L P+I +N +L
Sbjct: 745 PDTITFNALILGHCKSSHLDNAFAIYAQM---------------LHQGLSPNIATFNTLL 789
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYG-LVMEVMLACGKYNLVYEFFRKVQKSYI 123
+ A VL +K+ G +P+ TY LV K + + V K +I
Sbjct: 790 GGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFI 849
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
P A Y L++ + G ++A +M+RRG++ +++ Y
Sbjct: 850 PKASTYNSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTY 890
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 95/242 (39%), Gaps = 25/242 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSL---PKKKFKTGTLE------RWDPRLE- 54
P+ + Y ++ V L +AG +K+ +++ M S P L+ R D LE
Sbjct: 640 PNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEI 699
Query: 55 ----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
DI VYN +++ A VL ++ +G P T+ + ++
Sbjct: 700 HELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNAL--ILGH 757
Query: 105 CGKYNLVYEFF---RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
C +L F + + + PN + L+ L G+ EA + + DM++ G+ +
Sbjct: 758 CKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNN 817
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L EAL ++ P +Y L+ +G + A +F++
Sbjct: 818 LTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSE 877
Query: 222 MK 223
MK
Sbjct: 878 MK 879
>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1113
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 133/305 (43%), Gaps = 29/305 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + G++G I ELF++ + M K P+ + +N ++
Sbjct: 823 PDVFTYNLLLDAHGKSGKINELFELYEQMICSSCK---------------PNTITHNIII 867
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
V+ + A + L P+ TYG +++ +L G+ E F + V
Sbjct: 868 ANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCR 927
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y +L+N + G + A + M R GI Y L CLC AG+ ++AL
Sbjct: 928 PNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHY 987
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+K+ + ++Y +I S I+ A ++++M++ +P+L T N ++
Sbjct: 988 FEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGV 1047
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G+ E+A KL++E+ I E P+++T+N ++ + D VYKR
Sbjct: 1048 AGMVEQAGKLYEEL----QFIGLE--------PNVFTYNALIRGYSMSGNSDSAYAVYKR 1095
Query: 303 MLHHG 307
M+ G
Sbjct: 1096 MMVGG 1100
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 144/324 (44%), Gaps = 40/324 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + + + L +AG+I E F ++D MR K G L P++ YN ++
Sbjct: 367 PDVITFTILVNALCKAGNIDEAFHLLDVMR-------KQGVL--------PNLHTYNTLI 411
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ +R + + A + ++ G P+A TY L ++ G+ + E F K++ +
Sbjct: 412 SGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIA 471
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN +A + +L G+ EA ++ G+ + Y + +C AG+ +EA+
Sbjct: 472 PNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIEL 531
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ + + +P ++ LI +G + A +F ++K+ +P +VT N ++ +
Sbjct: 532 LSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGK 591
Query: 243 HGLFEEAMKLFQEMAEDS--------NHI------NREYDK--KGL-------VIPDIYT 279
G + AM+LF M + N I N E D K L +PD+ T
Sbjct: 592 EGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLT 651
Query: 280 FNTMLDACAAEKRWDDLELVYKRM 303
FNT++ EKR D ++ +M
Sbjct: 652 FNTIIHGLVIEKRVSDAIWLFHQM 675
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/362 (22%), Positives = 150/362 (41%), Gaps = 64/362 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y LG+AG I E ++ M D PD+V Y ++
Sbjct: 262 PNIYTYTICIRVLGRAGRIDEACRIMKRME---------------DDGCGPDVVTYTVLI 306
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+A + + A + ++K KP TY +++ CG V EF+ +++ Y
Sbjct: 307 DALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYA 366
Query: 124 PNALAYKVLVNTLWREGKTDEA----------------------------VSAVED---- 151
P+ + + +LVN L + G DEA V+ ++D
Sbjct: 367 PDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDL 426
Query: 152 ---MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
ME G+V +A Y +G+ ++AL +K+ P +V+ + + +
Sbjct: 427 FNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAE 486
Query: 209 SGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
G ++ A IFN++K N +P+ VT N+M+K Y + G +EA++L +M+E+
Sbjct: 487 MGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCE----- 541
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
PDI N++++ R D+ ++ R+ L + +I + G+
Sbjct: 542 -------PDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQ 594
Query: 328 VE 329
V+
Sbjct: 595 VQ 596
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 132/284 (46%), Gaps = 20/284 (7%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK---YNLVYEFFR 116
YN +++ ++ A + +++ +G KPS T+ +M+A GK V
Sbjct: 197 YNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFS---ALMVATGKRRDTETVKSLLE 253
Query: 117 KVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
+++ + PN Y + + L R G+ DEA ++ ME G Y L LC+AG
Sbjct: 254 EMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAG 313
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCN 234
K ++A+ K+ ++KP V+Y ++ D G++ +++M+ + +P+++T
Sbjct: 314 KLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFT 373
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
I+V A + G +EA L M +K V+P+++T+NT++ R D
Sbjct: 374 ILVNALCKAGNIDEAFHLLDVM------------RKQGVLPNLHTYNTLISGLLRVNRLD 421
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
D ++ M G+ A ++ I ++G+ + T+E +
Sbjct: 422 DALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKM 465
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 133/304 (43%), Gaps = 18/304 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+P+I Y + R + + A ++++++ G P TY ++++ + GK +
Sbjct: 260 LKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAM 319
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F K++ S+ P+ + Y +++ G +ME G + L L
Sbjct: 320 ELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNAL 379
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C AG +EA +D + K P + +Y LI L + +A +FN M+ P
Sbjct: 380 CKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTA 439
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T + + Y + G ++A++ F++M K + P+I N L + A
Sbjct: 440 YTYILFIDFYGKSGRSDKALETFEKM------------KIRGIAPNIVACNASLYSLAEM 487
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITP 346
R + ++++ R+ +GL ++ + M+ S+AG+V ELL E+ D I
Sbjct: 488 GRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVI 547
Query: 347 PALI 350
+LI
Sbjct: 548 NSLI 551
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 115/259 (44%), Gaps = 20/259 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ VA + +L + G ++E + + ++S L PD V YN ++
Sbjct: 472 PNIVACNASLYSLAEMGRLREAKVIFNRLKS---------------NGLAPDSVTYNMMM 516
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ Q + A +L + + +P ++ + G+ + ++ F +++ +
Sbjct: 517 KCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLA 576
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y L+ L +EG+ A+ M G + + + CLC + + AL
Sbjct: 577 PTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKM 636
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
+ K+ + P V+++ +I + + +A ++F+QMK +P+ VT ++ +++
Sbjct: 637 LYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKKMLTPDCVTLCTLLPGVVKN 696
Query: 244 GLFEEAMKLFQEMAEDSNH 262
GL E+A K+ AED H
Sbjct: 697 GLMEDAFKI----AEDFVH 711
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 125/288 (43%), Gaps = 14/288 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P + YN ++ + E A+ + ++K G P TY L+++ GK N ++
Sbjct: 786 VKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELF 845
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E + + + S PN + + +++ L + D+A+ D+ + Y L L
Sbjct: 846 ELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGL 905
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
+G+ EEA +++ +P Y LI +G++ A +F +M + P+L
Sbjct: 906 LKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDL 965
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+ +V E G ++A+ F+++ + GL + I +N M+D
Sbjct: 966 KSYTSLVGCLCEAGRVDDALHYFEKLKQ-----------TGLYLDSI-AYNLMIDGLGRS 1013
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
R ++ +Y M G++ + + +IL+ AG VE +E L
Sbjct: 1014 HRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEEL 1061
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 116/253 (45%), Gaps = 22/253 (8%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLERW 49
S P+T+ + I L ++ + + D+ + S L K+G LE
Sbjct: 855 SCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEA 914
Query: 50 DPRLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
E P+ +YN ++N + A + +++ ++G +P +Y ++
Sbjct: 915 KELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGC 974
Query: 102 MLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ G+ + +F K++++ + +++AY ++++ L R + +EA++ ++M+ RGI
Sbjct: 975 LCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPD 1034
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y L L AG E+A +++ + +P V +Y LI+ SGN +A ++
Sbjct: 1035 LFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYK 1094
Query: 221 QMK-NFCSPNLVT 232
+M CSPN T
Sbjct: 1095 RMMVGGCSPNTGT 1107
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/431 (18%), Positives = 164/431 (38%), Gaps = 89/431 (20%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P V Y ++ LG+ G ++ ++ SM TG P+ + +
Sbjct: 573 MKLAPTVVTYNTLIAGLGKEGQVQRAMELFASM---------TGN------GCPPNTITF 617
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N +L+ + + + A +L ++ P T+ ++ ++ + + F +++K
Sbjct: 618 NTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKK 677
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVED-MERRGIVGSAALYYDLARCLCSAGKCEE 179
P+ + L+ + + G ++A ED + R G+ + DL + + E+
Sbjct: 678 MLTPDCVTLCTLLPGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEK 737
Query: 180 ALMQMD-----KICK-------------------------------VANKPLVVSYTGLI 203
++ D ++CK + KP + SY LI
Sbjct: 738 TILFGDRLVCGRVCKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLI 797
Query: 204 QACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA----- 257
+ L N + A +F +MKN C+P++ T N+++ A+ + G E +L+++M
Sbjct: 798 EGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCK 857
Query: 258 -------------EDSNHINREYD-----KKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
SN +++ D G P T+ +LD R ++ + +
Sbjct: 858 PNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKEL 917
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLE 359
++ M+ +G N + +I + G V ++ + R + I P +
Sbjct: 918 FEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVR-EGIRP------------D 964
Query: 360 NKDYGSAISCL 370
K Y S + CL
Sbjct: 965 LKSYTSLVGCL 975
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 15/190 (7%)
Query: 115 FRKVQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F +Q I L Y ++ L+ G + A M G +A Y L L
Sbjct: 147 FNLMQNQIIKRDLNTYLIIFKGLFIRGGLRQTPFAFGKMREAGFHLNAYSYNGLIHLLLQ 206
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
+G C EAL ++ KP + +++ L+ A + + + +M++ PN+ T
Sbjct: 207 SGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYT 266
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEK 291
I ++ G +EA ++ + M +D PD+ T+ ++DA C A K
Sbjct: 267 YTICIRVLGRAGRIDEACRIMKRMEDDGCG------------PDVVTYTVLIDALCTAGK 314
Query: 292 RWDDLELVYK 301
D +EL K
Sbjct: 315 LDDAMELFVK 324
>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
Length = 778
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/313 (21%), Positives = 136/313 (43%), Gaps = 34/313 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTLERW------------- 49
PD V+Y ++ + I E F +++ M + + + +W
Sbjct: 346 PDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNT 405
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ PD V YN ++N + AF + ++ ++ K + T ++ +
Sbjct: 406 ITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCR 465
Query: 105 CGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
K Y+ +K Y + ++Y L+ +++G D A+ ++M+ + I+ S
Sbjct: 466 EKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVT 525
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y + LC GK E+A+ +++++ + P +Y ++ G+++ A N+M
Sbjct: 526 YNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMV 585
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+N P++ TCNI+++ G+ E+A+KLF + KG I D T+NT
Sbjct: 586 ENSFKPDVFTCNILLRGLCMEGMLEKALKLFN-----------TWVSKGKAI-DTVTYNT 633
Query: 283 MLDACAAEKRWDD 295
++ + E R DD
Sbjct: 634 LITSLCKEGRLDD 646
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 104/238 (43%), Gaps = 15/238 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++ +N V+ +++ A L + + P TY +++ + G+ +
Sbjct: 206 PNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDL 265
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ + +PN Y +LV + G EA + +E M + ++ Y L LC+
Sbjct: 266 LMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCN 325
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+ EEA D++ + P VVSY LI CL+ I A + +M + PN VT
Sbjct: 326 EGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVT 385
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAA 289
NIMVK Y + G ++A +M E PD T+NT+++ C A
Sbjct: 386 HNIMVKWYCKEGKMDDASNTITKMEESG------------FSPDCVTYNTLINGYCKA 431
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 75/329 (22%), Positives = 138/329 (41%), Gaps = 32/329 (9%)
Query: 19 QAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFW 78
Q+G F + M+ L RL P+++ N +LN+ VR +
Sbjct: 147 QSGQPHHAFQIFKKMKRL---------------RLRPNLLTCNTLLNSLVRYPSSHSVSF 191
Query: 79 VLQQLK---QQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVN 134
+ + G P+ T+ +V+ K+ EF + K + P+ + Y +++
Sbjct: 192 SREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILD 251
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194
L ++G+ +A + DM+ RG++ + Y L C G +EA ++ + + P
Sbjct: 252 ALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLP 311
Query: 195 LVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLF 253
V +Y LI + G I+ A + ++M+N P++V+ N ++ LE EA KL
Sbjct: 312 DVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLL 371
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK 313
+EM+E KG V P+ T N M+ E + DD +M G +
Sbjct: 372 EEMSE-----------KG-VKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCV 419
Query: 314 RHLRMILDASRAGKVELLEITWEHLARAD 342
+ +I +AG + T + + R +
Sbjct: 420 TYNTLINGYCKAGNMGEAFRTMDEMGRKN 448
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 99/238 (41%), Gaps = 21/238 (8%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLER----W 49
D+V +I TL + ++E + ++ S R +L FK G ++R W
Sbjct: 452 DSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLW 511
Query: 50 DPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
D E P V YN ++ + + E A L +L + G P TTY ++
Sbjct: 512 DEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCRE 571
Query: 106 GKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G ++F K V+ S+ P+ +L+ L EG ++A+ +G Y
Sbjct: 572 GDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTY 631
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
L LC G+ ++A + ++ + P +Y +I A DSG I+ A ++M
Sbjct: 632 NTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKM 689
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 108/252 (42%), Gaps = 19/252 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y +I L + G + + D++ M+S L P+ YN ++
Sbjct: 241 PDNVTYNTILDALCKKGRLGDARDLLMDMKS---------------RGLLPNRNTYNILV 285
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ + A V++ + Q P TY +++ + G+ ++ +++ +
Sbjct: 286 YGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLL 345
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++Y L+N K EA +E+M +G+ +A + + + C GK ++A
Sbjct: 346 PDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNT 405
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
+ K+ + P V+Y LI +GN+ A ++M KN + VT N +++
Sbjct: 406 ITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNM-KMDSVTLNTILRTLC 464
Query: 242 EHGLFEEAMKLF 253
EEA KL
Sbjct: 465 REKKLEEAYKLL 476
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 16/194 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P TV Y I L Q G ++ ++ + ++G L PD YN +L
Sbjct: 521 PSTVTYNCIIGGLCQCGKTEQAISKLNEL-------LESGLL--------PDETTYNTIL 565
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ R E AF ++ + KP T +++ + G + F V K
Sbjct: 566 HGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKA 625
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y L+ +L +EG+ D+A + + +ME + + Y + L +G+ EA
Sbjct: 626 IDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEF 685
Query: 184 MDKICKVANKPLVV 197
M K+ + P V
Sbjct: 686 MSKMLEKGXLPXQV 699
>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
Length = 987
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 132/321 (41%), Gaps = 35/321 (10%)
Query: 5 PDTVAYRSIA---VTLGQAGHIKELFDVIDSMRSLP---------------KKKFKTGTL 46
P+ V Y SI +G G E+F +++ P KK K L
Sbjct: 456 PNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMAL 515
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ + + P ++ Y ++ ++ +++ AF + + ++Q G P Y ++ + +
Sbjct: 516 ITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCK 575
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G+ Y F V+K + + Y LV+ + G TD A +E M G Y
Sbjct: 576 SGRAEEAYSFL--VRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTY 633
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-K 223
L + LC K EAL +D++ K +V+YT +I + G +A +FN+M
Sbjct: 634 SVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMIS 693
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
+ P+ T + + +Y + G EEA L EM D V PD+ T+N
Sbjct: 694 SGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDG------------VTPDVVTYNIF 741
Query: 284 LDACAAEKRWDDLELVYKRML 304
++ C D KRM+
Sbjct: 742 INGCGHMGYIDRAFSTLKRMV 762
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/319 (22%), Positives = 134/319 (42%), Gaps = 18/319 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + L P++V Y ++++ + A V + ++ +G P+A TYG ++ ++
Sbjct: 448 EMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDK 507
Query: 107 KYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K + K+Q+ I P + Y L+ ++ + D A E ME+ G+ Y
Sbjct: 508 KLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYN 567
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN- 224
L LC +G+ EEA + + V K V+YT L+ +GN AA + +M N
Sbjct: 568 VLTDALCKSGRAEEAYSFLVRKGVVLTK---VTYTSLVDGFSKAGNTDFAAVLIEKMVNE 624
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
C +L T +++++A + EA+ + +M N I + ++
Sbjct: 625 GCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCN------------IVAYTIII 672
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI 344
E + D + ++ M+ G +A + I + G++E E + R D +
Sbjct: 673 SEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMER-DGV 731
Query: 345 TPPALIKERFCNRLENKDY 363
TP + F N + Y
Sbjct: 732 TPDVVTYNIFINGCGHMGY 750
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 73/365 (20%), Positives = 136/365 (37%), Gaps = 94/365 (25%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFD----------------VIDSMRSLPKKKFKTGTLER 48
PD AY + L ++G +E + ++D F +E+
Sbjct: 561 PDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEK 620
Query: 49 W-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK 107
+ + D+ Y+ +L A ++K+ A +L Q+ G K + Y +++ M+ GK
Sbjct: 621 MVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGK 680
Query: 108 YNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
++ F + + + P+A Y V +++ + G+ +EA + +MER G+
Sbjct: 681 HDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVT-------- 732
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF- 225
P VV+Y I C G I A +M +
Sbjct: 733 ---------------------------PDVVTYNIFINGCGHMGYIDRAFSTLKRMVDAS 765
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY-DKKGLVIPDIYTFNTML 284
C PN T +++K +L+ L IN Y D G+
Sbjct: 766 CEPNCWTYWLLLKHFLKMSL-----------------INAHYVDTSGM------------ 796
Query: 285 DACAAEKRWDDLELVYK---RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
W +L +V++ RM+ HGL+ + +I +A ++E + +H+
Sbjct: 797 ------WNWIELNMVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGK 850
Query: 342 DRITP 346
D I+P
Sbjct: 851 D-ISP 854
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/346 (20%), Positives = 138/346 (39%), Gaps = 67/346 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV Y ++ + + G + ++ + F L R + ++ D NA+L
Sbjct: 177 PDTVTYNTMIMAYCKKGSL-----------AIAHRYF---CLLR-ESGMQMDTYTCNALL 221
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA--CGKYNLVYEFFRKVQKSY 122
R A W+L + G + + +Y ++++ + C + LV F V
Sbjct: 222 LGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCEARCVREALVL-VFMMVHDGC 280
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL- 181
N Y +L+ L +EG+ +A +++M RG+V S Y + C +G+ ++AL
Sbjct: 281 SLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALG 340
Query: 182 --------------------------MQMDKICKVAN-------KPLVVSYTGLIQACLD 208
++D+ ++ N P V+++T LI
Sbjct: 341 IKALMEQNGCNPDDWTYNSLIYGLCGGKLDEAEELLNGAIARGFTPTVITFTNLINGYCK 400
Query: 209 SGNIQNAAYI-FNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
+ I +A + N + + C +L +++ ++ +EA + EM +
Sbjct: 401 AERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANG------- 453
Query: 268 DKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKRMLHHGLHFNA 312
+ P++ T+ +++D C LE V+K M H G H NA
Sbjct: 454 -----LAPNVVTYTSIIDGYCKVGMVGAALE-VFKLMEHEGCHPNA 493
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 22/221 (9%)
Query: 44 GTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
G +ER + PD+V YN +N C + AF L+++ +P+ TY L+++ L
Sbjct: 724 GEMER--DGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFL 781
Query: 104 ACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
N Y V S + N + +N +W+ +E M + G+ +
Sbjct: 782 KMSLINAHY-----VDTSGMWNWIE----LNMVWQ---------LLERMMKHGLNPTVVT 823
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + C A + EEA + +D + P YT LI+ C D A M
Sbjct: 824 YSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMI 883
Query: 224 NFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQE-MAEDSNH 262
F P L + + ++ + G ++ A LF + + D NH
Sbjct: 884 EFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNH 924
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 120/324 (37%), Gaps = 62/324 (19%)
Query: 18 GQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAF 77
G A ++E D I ++R + K+ L P YN L + +R E
Sbjct: 117 GTAEDVREAVDAIQAIRRVGGKRLV----------LSPK--CYNLALRSLLRFDMTEYMG 164
Query: 78 WVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS------YIPNAL---- 127
+ L Q+G P TY ++ G + + +F +++S Y NAL
Sbjct: 165 KLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGY 224
Query: 128 --------------------------AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
+Y +L+ L EA+ V M G +
Sbjct: 225 CRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNL 284
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L + LC G+ +A +D++ P V +Y +I SG +++A I
Sbjct: 285 HTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKAL 344
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
M +N C+P+ T N ++ L G +EA +L + I R + P + TF
Sbjct: 345 MEQNGCNPDDWTYNSLIYG-LCGGKLDEAEELL------NGAIARGF------TPTVITF 391
Query: 281 NTMLDACAAEKRWDDLELVYKRML 304
+++ +R DD V M+
Sbjct: 392 TNLINGYCKAERIDDALRVKSNMI 415
>gi|298707694|emb|CBJ26011.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1173
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 115/234 (49%), Gaps = 13/234 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+++Y V+ AC K+W+ A +L + G P+ + CG+ + +
Sbjct: 262 PDLLLYAVVMKACAWGKRWQQAIRLLDDMSAAGVAPNVVVVNTALSACAKCGQVSRATQL 321
Query: 115 FRKVQKSY--IPNALAYKVLVNTLWREGKTDEAVSAVEDMERR-GIVGSAALYYDLARCL 171
+++Q+ Y P +Y +++ R G+ EA++ + ME+ G++ + + +
Sbjct: 322 LQEMQEKYGVAPEVRSYNSVISGHERAGEWREALALAKRMEQADGVLPNVVTFNSVIGAC 381
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
+AG+ EEAL + + + +P V+S+ I AC G + A + M + +P+L
Sbjct: 382 KTAGRPEEALAVLGMLRRKGLQPDVISFNSAIGACASGGKWEVALQLLELMPSEGVTPDL 441
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
+T NI + A ++ G +E AM LF E+ + R PD+YT+NT++
Sbjct: 442 MTYNIALDACVKGGQWEMAMSLFDELVASGDESLR---------PDLYTYNTLM 486
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 108/272 (39%), Gaps = 34/272 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V + S+ AG +E V+ +R + G L+PD++ +N+ +
Sbjct: 369 PNVVTFNSVIGACKTAGRPEEALAVLGMLR-------RKG--------LQPDVISFNSAI 413
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV----QK 120
AC +WE A +L+ + +G P TY + ++ + G++ + F ++ +
Sbjct: 414 GACASGGKWEVALQLLELMPSEGVTPDLMTYNIALDACVKGGQWEMAMSLFDELVASGDE 473
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
S P+ Y L+ G A+ +E+ + + + Y L R CE +
Sbjct: 474 SLRPDLYTYNTLMTVFSDAGMLPRALELLEEAKAKRLRPDVVTYSTLIRA------CERS 527
Query: 181 L-MQMDKICKVAN-------KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVT 232
+ Q D K+ + +P +Y G+ + S + M +P
Sbjct: 528 MPSQPDVALKLVSDMEAEGVRPNNTTYVGVAISLGRSARPLECLDLLRSMHGKGTPPDAI 587
Query: 233 CNIMVKAYLEH-GLFEEAMKLFQEMAEDSNHI 263
C + V L+ L EEA LF+EM E I
Sbjct: 588 CYLAVLKVLDRWDLAEEASLLFEEMVETIEQI 619
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/320 (20%), Positives = 116/320 (36%), Gaps = 47/320 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKF----KTGTLERWDPRLEPDIV 58
P+ Y +A++LG++ E D++ SM + P L+RWD E ++
Sbjct: 549 PNNTTYVGVAISLGRSARPLECLDLLRSMHGKGTPPDAICYLAVLKVLDRWDLAEEASLL 608
Query: 59 --------------------VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLV 98
Y + A R +W A +L Q +Q+G +Y
Sbjct: 609 FEEMVETIEQIALMPAIAEETYCCGIRALERLGKWSEAVALLDQWRQKG------SYDAD 662
Query: 99 MEVMLACGKYNLVYEFFRKVQKSYIPNALAYKV---LVNTLWREGKTDEAVSAVEDMERR 155
+ M Y+ Y R + +P K + + R G ++A++ + ME R
Sbjct: 663 NDRM-----YDQWYRALRLLSTGGLPEETDVKTSRAAIVSAARGGLVEDALAIMRSMESR 717
Query: 156 GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA 215
G Y AGK E L D++ +P V+ Y + C + A
Sbjct: 718 GFELGVVEYGAAIEAFEKAGKPERGLEMFDEMIAAGVEPDVLCYAAATRCCCRRLDWAGA 777
Query: 216 -AYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI 274
+++ ++ P T + G +EE L +E+ D D GL
Sbjct: 778 ISFVETTLREGLLPTGKTFETVAGLCRNSGRYEELWDL-KELMRDIV-----VDGGGLAR 831
Query: 275 PDIYTFNTMLDACAAEKRWD 294
P + +++ AC A +R D
Sbjct: 832 PGSSIYVSLIRACGAARRPD 851
>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
Length = 899
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 110/253 (43%), Gaps = 15/253 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P ++ Y ++ ++ +++ AF + + ++Q G P Y ++ + G+ Y
Sbjct: 435 ITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAEEAY 494
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F V+K + + Y LV+ + G TD A +E M G + Y L + LC
Sbjct: 495 SFL--VRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALC 552
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
K EAL +D++ K +V+YT +I + G +A +FN+M + P+
Sbjct: 553 KQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAT 612
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T + + +Y + G EEA L EM D V PD+ T+N ++ C
Sbjct: 613 TYTVFISSYCKIGQIEEAEHLIGEMERDG------------VAPDVVTYNVFINGCGHMG 660
Query: 292 RWDDLELVYKRML 304
D KRM+
Sbjct: 661 YMDRAFSTLKRMI 673
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 137/327 (41%), Gaps = 18/327 (5%)
Query: 39 KKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLV 98
K+ K E + L P++V+Y ++++ + + A V + ++ +G +P+A TY +
Sbjct: 351 KEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSL 410
Query: 99 MEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
+ ++ K + K+Q+ I P + Y L+ ++ + D A E ME+ G+
Sbjct: 411 IYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGL 470
Query: 158 VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217
Y L LC +G+ EEA + + V K V+YT L+ +GN AA
Sbjct: 471 TPDEQAYNVLTHALCKSGRAEEAYSFLVRKGVVLTK---VTYTSLVDGFSKAGNTDFAAV 527
Query: 218 IFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
+ +M N C + T +++++A + EA+ + +M N
Sbjct: 528 LIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCN------------ 575
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWE 336
I + ++ E + D + ++ M+ G +A + I + G++E E
Sbjct: 576 IVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIG 635
Query: 337 HLARADRITPPALIKERFCNRLENKDY 363
+ R D + P + F N + Y
Sbjct: 636 EMER-DGVAPDVVTYNVFINGCGHMGY 661
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/364 (19%), Positives = 139/364 (38%), Gaps = 92/364 (25%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFD----------------VIDSMRSLPKKKFKTGTLER 48
PD AY + L ++G +E + ++D F +E+
Sbjct: 472 PDEQAYNVLTHALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEK 531
Query: 49 W-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK 107
+ + D Y+ +L A ++K+ A +L Q+ G K + Y +++ M+ GK
Sbjct: 532 MVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGK 591
Query: 108 YNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
++ F + + + P+A Y V +++ + G+ +EA + +MER G+
Sbjct: 592 HDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVA-------- 643
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF- 225
P VV+Y I C G + A +M +
Sbjct: 644 ---------------------------PDVVTYNVFINGCGHMGYMDRAFSTLKRMIDAS 676
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
C PN T I++K +L+ L D++++ D G+
Sbjct: 677 CEPNYWTYWILLKHFLKMSLV------------DAHYV----DTSGM------------- 707
Query: 286 ACAAEKRWDDLELVYK---RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARAD 342
W +L+ V++ RM+ HGL+ A + +I +A ++E + ++H+ R
Sbjct: 708 -----WNWIELDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLFDHM-RGK 761
Query: 343 RITP 346
I+P
Sbjct: 762 DISP 765
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/255 (20%), Positives = 107/255 (41%), Gaps = 17/255 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P ++ + ++N + ++ + A V + K YG+++ V++ ++ E
Sbjct: 297 PTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAKET 356
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ PN + Y +++ + GK A+ ME G +A Y L L
Sbjct: 357 VSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQ 416
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
K +A+ + K+ + P V++YT LIQ NA +F M +N +P+
Sbjct: 417 DQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQA 476
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N++ A + G EEA +KG+V+ + T+ +++D +
Sbjct: 477 YNVLTHALCKSGRAEEAYSFLV--------------RKGVVLTKV-TYTSLVDGFSKAGN 521
Query: 293 WDDLELVYKRMLHHG 307
D ++ ++M++ G
Sbjct: 522 TDFAAVLIEKMVNEG 536
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/278 (18%), Positives = 115/278 (41%), Gaps = 17/278 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG-KYNLVYE 113
P + YNA+++ + + + A + +++ G P TY +++ + CG K + E
Sbjct: 228 PSVWTYNAMIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNILIYGL--CGEKPDEAEE 285
Query: 114 FFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ + + P + + ++N + + D+A+ M Y L L
Sbjct: 286 LLNDAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVLINVLI 345
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLV 231
+ +EA + ++ P VV YT +I G + A +F M++ C PN
Sbjct: 346 KKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAW 405
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T + ++ ++ +AM L +M ED + P + T+ T++ +
Sbjct: 406 TYSSLIYGLIQDQKLHKAMALITKMQEDG------------ITPGVITYTTLIQGQCKKH 453
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+D+ +++ M +GL + + + + ++G+ E
Sbjct: 454 EFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAE 491
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 100/243 (41%), Gaps = 23/243 (9%)
Query: 44 GTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
G +ER + PD+V YN +N C + AF L+++ +P+ TY ++++ L
Sbjct: 635 GEMER--DGVAPDVVTYNVFINGCGHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHFL 692
Query: 104 -----------ACGKYN-----LVYEFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAV 146
G +N V++ R V+ P A+ Y ++ + + +EA
Sbjct: 693 KMSLVDAHYVDTSGMWNWIELDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEAC 752
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
+ M + I + +Y L +C C +A+ + + + +P + SY LI
Sbjct: 753 VLFDHMRGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPHLESYHYLIVGL 812
Query: 207 LDSGNIQNAAYIFNQ---MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
D G+ A +F M+++ + N V I+ L+ G + +L M I
Sbjct: 813 CDEGDYDKAKSLFCDLLGMEDY-NHNEVAWKILNDGLLKAGHVDFCSQLLSAMENRHCQI 871
Query: 264 NRE 266
+ E
Sbjct: 872 DSE 874
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 57/283 (20%), Positives = 110/283 (38%), Gaps = 54/283 (19%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLA--CGKYNLVYEFFRKVQKSYIPNALAYKVLV 133
A W+L + G + + +Y ++++ + C + LV VQ N Y +L+
Sbjct: 144 ACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVL-LVMMVQDGCSLNLHTYTLLI 202
Query: 134 NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL------------ 181
L +EG+ A +E+M RG+V S Y + C +G+ ++AL
Sbjct: 203 KGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMERNGCN 262
Query: 182 -----------------------MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
+ D I + P V+++T +I + I +A +
Sbjct: 263 PDDWTYNILIYGLCGEKPDEAEELLNDAIVR-GFTPTVITFTNIINGYCKAERIDDALRV 321
Query: 219 FNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI 277
M + C +L +++ ++ F+EA + EM + + P++
Sbjct: 322 KTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANG------------LAPNV 369
Query: 278 YTFNTMLDA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
+ +++D C K LE V++ M H G NA + +I
Sbjct: 370 VIYTSIIDGYCKVGKVGAALE-VFRLMEHEGCRPNAWTYSSLI 411
>gi|428186270|gb|EKX55120.1| hypothetical protein GUITHDRAFT_53115, partial [Guillardia theta
CCMP2712]
Length = 363
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 148/325 (45%), Gaps = 20/325 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V+Y + L + G +E + DS+ S ++ L PD V ++ +
Sbjct: 17 PTRVSYNAAMSALTRNGRWREALSMFDSVFSQTERNKVAAR------SLRPDTVTFSTAI 70
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+AC + +W+ A + +++ QG +P+ T+ ++ G+ + +E F ++Q + +
Sbjct: 71 SACAKGGEWQRAMNMYHEMEAQGIEPNEFTFAALITACEKGGQVSKAFEVFERMQARGIV 130
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + +++ + G A+ +E+M +GI + Y A + AL
Sbjct: 131 GNVYTFTAAISSCEKLGDWQRALKLLEEMIAKGIQPNLQAYSAAISACEKAAEARPALGL 190
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
++++ KP ++ Y+ ++ AC +G + AA IF +MK +P++V + +++AY
Sbjct: 191 LERMTNEKIKPDIIVYSAVMAACGKAGLWEPAARIFQKMKREGLTPDVVAYSTLIQAYQR 250
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + A+++FQ M +K V P++ + + ACA W + +R
Sbjct: 251 AGEWSRALEVFQLM------------EKAGVRPNVIAYTEAIAACAKAGEWRRSLGLLER 298
Query: 303 MLHHGLHFNAKRHLRMILDASRAGK 327
M L +A + +I SR G+
Sbjct: 299 MKADKLRPDAVAYNFVISALSRGGQ 323
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 134/312 (42%), Gaps = 32/312 (10%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ---------KPSATTYGLVMEVML 103
L P V YNA ++A R +W A + + Q + +P T+ +
Sbjct: 15 LTPTRVSYNAAMSALTRNGRWREALSMFDSVFSQTERNKVAARSLRPDTVTFSTAISACA 74
Query: 104 ACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G++ + +++ I PN + L+ + G+ +A E M+ RGIVG+
Sbjct: 75 KGGEWQRAMNMYHEMEAQGIEPNEFTFAALITACEKGGQVSKAFEVFERMQARGIVGNVY 134
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+ G + AL ++++ +P + +Y+ I AC + + A + +M
Sbjct: 135 TFTAAISSCEKLGDWQRALKLLEEMIAKGIQPNLQAYSAAISACEKAAEARPALGLLERM 194
Query: 223 KN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
N P+++ + ++ A + GL+E A ++FQ+M ++GL PD+ ++
Sbjct: 195 TNEKIKPDIIVYSAVMAACGKAGLWEPAARIFQKM-----------KREGLT-PDVVAYS 242
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEITWEH 337
T++ A W V++ M G+ N + I ++AG+ + LLE
Sbjct: 243 TLIQAYQRAGEWSRALEVFQLMEKAGVRPNVIAYTEAIAACAKAGEWRRSLGLLERM--- 299
Query: 338 LARADRITPPAL 349
+AD++ P A+
Sbjct: 300 --KADKLRPDAV 309
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 91/174 (52%), Gaps = 2/174 (1%)
Query: 44 GTLERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
G LER + +++PDI+VY+AV+ AC + WE A + Q++K++G P Y +++
Sbjct: 189 GLLERMTNEKIKPDIIVYSAVMAACGKAGLWEPAARIFQKMKREGLTPDVVAYSTLIQAY 248
Query: 103 LACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
G+++ E F+ ++K+ + PN +AY + + G+ ++ +E M+ + A
Sbjct: 249 QRAGEWSRALEVFQLMEKAGVRPNVIAYTEAIAACAKAGEWRRSLGLLERMKADKLRPDA 308
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA 215
Y + L G+ + L + + + +P + +Y +I+AC D+G + A
Sbjct: 309 VAYNFVISALSRGGQWDAGLTLLQMLEEDEAQPNISTYCTVIKACGDNGQWEKA 362
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/292 (18%), Positives = 119/292 (40%), Gaps = 29/292 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + ++ + G + + F+V + M++ + ++ + A +
Sbjct: 96 PNEFTFAALITACEKGGQVSKAFEVFERMQARG---------------IVGNVYTFTAAI 140
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
++C + W+ A +L+++ +G +P+ Y + + ++ I
Sbjct: 141 SSCEKLGDWQRALKLLEEMIAKGIQPNLQAYSAAISACEKAAEARPALGLLERMTNEKIK 200
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y ++ + G + A + M+R G+ Y L + AG+ AL
Sbjct: 201 PDIIVYSAVMAACGKAGLWEPAARIFQKMKREGLTPDVVAYSTLIQAYQRAGEWSRALEV 260
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ K +P V++YT I AC +G + + + +MK + P+ V N ++ A
Sbjct: 261 FQLMEKAGVRPNVIAYTEAIAACAKAGEWRRSLGLLERMKADKLRPDAVAYNFVISALSR 320
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
G ++ + L Q + ED P+I T+ T++ AC +W+
Sbjct: 321 GGQWDAGLTLLQMLEEDEAQ------------PNISTYCTVIKACGDNGQWE 360
>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 860
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 118/260 (45%), Gaps = 14/260 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
P++V YN V++ + + A + ++ +QG KP TY L+++ + +
Sbjct: 262 SPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAEL 321
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R++ + P+ + Y +++ G+ EA M+ RG++ + + LC
Sbjct: 322 VLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLC 381
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLV 231
G+ +EA D + +KP +VSY L+ G + +FN MK N + +
Sbjct: 382 KHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCR 441
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
NI++ AY + G+ ++AM +F EM + V PD+ T++T++ A +
Sbjct: 442 VFNILIHAYAKRGMVDDAMLIFTEMQQQG------------VSPDVVTYSTVISAFSRMG 489
Query: 292 RWDDLELVYKRMLHHGLHFN 311
R D + +M+ G+ N
Sbjct: 490 RLTDAMEKFNQMVARGIQPN 509
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 116/246 (47%), Gaps = 16/246 (6%)
Query: 67 CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK---SYI 123
C + E +L ++ + G P+ +Y ++++ + + F+ + K +
Sbjct: 203 CYANRTEEAVNVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACS 262
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN +AY +++ ++EG+T +A S +M R+G+ Y + LC A ++A +
Sbjct: 263 PNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELV 322
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+ ++ +P V+Y +I G ++ AA +F +MK+ PN+V CN + + +
Sbjct: 323 LRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCK 382
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
HG +EA ++F M + PDI ++ T+L A+E + D+ ++
Sbjct: 383 HGRSKEAAEIFDSMTAKGHK------------PDIVSYCTLLHGYASEGWFADMIGLFNS 430
Query: 303 MLHHGL 308
M +G+
Sbjct: 431 MKSNGI 436
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/348 (20%), Positives = 138/348 (39%), Gaps = 39/348 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR----------------SLPKKKFKTGTLER 48
PDTV Y + G +KE + M+ SL K E
Sbjct: 333 PDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEI 392
Query: 49 WDPRL----EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+D +PDIV Y +L+ + + +K G + +++
Sbjct: 393 FDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAK 452
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + F ++Q+ + P+ + Y +++ R G+ +A+ M RGI + A+
Sbjct: 453 RGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAV 512
Query: 164 YYDLARCLCSAG---KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y+ + + C G K +E + +M I K +P +V + +I + G + +A IF+
Sbjct: 513 YHSIIQGFCMHGGLVKAKELVSEM--INKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFD 570
Query: 221 QMKNFCS-PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
+ + P+++T ++ Y G ++A K+ M V DI T
Sbjct: 571 LVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVG------------VETDIVT 618
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
++T+LD R +D +++ M G+ N + M+ RAG+
Sbjct: 619 YSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGR 666
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/386 (20%), Positives = 142/386 (36%), Gaps = 76/386 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y ++ G ++ + +SM+S + D V+N ++
Sbjct: 403 PDIVSYCTLLHGYASEGWFADMIGLFNSMKS---------------NGIAADCRVFNILI 447
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+A +R + A + +++QQG P TY V+ G+ E F + V +
Sbjct: 448 HAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQ 507
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD-LARCLCSAGKCEEALM 182
PN Y ++ G +A V +M +GI ++++ + LC G+ +A
Sbjct: 508 PNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHD 567
Query: 183 QMDKICKVANKPLVVSYTGLIQA-CL---------------------------------- 207
D + + +P V+++T LI CL
Sbjct: 568 IFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYF 627
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
+G I + +F +M + PN VT IM+ G A K F EM E +
Sbjct: 628 KNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVS 687
Query: 267 ---------------------YDKKGL--VIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
+ K G V I NTM++A +R ++ + ++ +
Sbjct: 688 IYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATI 747
Query: 304 LHHGLHFNAKRHLRMILDASRAGKVE 329
GL N + MI++ + G VE
Sbjct: 748 SASGLLPNESTYGVMIINLLKDGAVE 773
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 84/183 (45%), Gaps = 16/183 (8%)
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL-MQMDKI 187
Y +L++ R + D + + R G+ L +CLC A + EEA+ + + ++
Sbjct: 160 YSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNVLLHRM 219
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK---NFCSPNLVTCNIMVKAYLEHG 244
++ P V SY+ +++ D+ Q A +F M CSPN+V N ++ + + G
Sbjct: 220 SELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEG 279
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
+A LF EM V PD+ T+N ++DA + D ELV ++M
Sbjct: 280 ETGKACSLFHEMTRQG------------VKPDVVTYNLIIDALCKARAMDKAELVLRQMT 327
Query: 305 HHG 307
+G
Sbjct: 328 TNG 330
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/329 (18%), Positives = 138/329 (41%), Gaps = 33/329 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T Y SI G + + +++ M + + PR PDIV +N+V+
Sbjct: 508 PNTAVYHSIIQGFCMHGGLVKAKELVSEM------------INKGIPR--PDIVFFNSVI 553
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N+ + + A + + G++P T+ +++ GK + ++ ++ +
Sbjct: 554 NSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVE 613
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y L++ ++ G+ ++ ++ +M+R+G+ + Y + L AG+ A +
Sbjct: 614 TDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKK 673
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP--NLVTCNIMVKAYL 241
++ + + + VS G+I L N + A I Q + ++ N M+ A
Sbjct: 674 FHEMIE-SGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMY 732
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ EEA +LF ++ ++P+ T+ M+ + +D ++
Sbjct: 733 KVQRKEEAKELFATISASG------------LLPNESTYGVMIINLLKDGAVEDANNMFS 780
Query: 302 RMLHHGLHFNAK---RHLRMILDASRAGK 327
M G+ ++ R +RM+L+ K
Sbjct: 781 SMEKSGIVPGSRLLNRIIRMLLEKGEIAK 809
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/298 (18%), Positives = 131/298 (43%), Gaps = 30/298 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + + S+ G + + F ++D+M + +E DIV Y+ +L
Sbjct: 579 PDVITFTSLIDGYCLVGKMDKAFKILDAMEVVG---------------VETDIVTYSTLL 623
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + + + ++++++G KP+ TYG+++ + G+ + F ++ +S
Sbjct: 624 DGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTT 683
Query: 125 NALA-YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
++ Y +++ L R DEA+ + + + S + + + + EEA
Sbjct: 684 VTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKEL 743
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
I P +Y +I L G +++A +F+ M K+ P N +++ LE
Sbjct: 744 FATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLE 803
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW-DDLELV 299
G E+A+ N++++ K+ ++ + T + ML + + ++ +D++L+
Sbjct: 804 KG----------EIAKAGNYLSKVDGKR--ILLEASTTSLMLSLFSRKGKYHEDMKLL 849
>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 506
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 133/299 (44%), Gaps = 14/299 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P V+YN ++N + + EGAF Q+K + KP TY ++ + +
Sbjct: 186 LVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQ 245
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ ++Q + + P + L++ R G+ ++ + +M+ G+ + Y +
Sbjct: 246 DLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF 305
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C GK EA+ +D + P Y +I A ++ G A + +MK N SP++
Sbjct: 306 CKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSI 365
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N+++K EA ++ + SNH +IPD ++NT++ AC
Sbjct: 366 VTYNLLIKGLCNQSQISEAEEIINSL---SNH---------RLIPDAVSYNTLISACCYR 413
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPAL 349
D + +RM +G+ + + ++I AG++ +E ++ + + + + A+
Sbjct: 414 GNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAI 472
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 131/308 (42%), Gaps = 34/308 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ L +A I D++ +E D + P + +N ++
Sbjct: 223 PDHITYNALINGLCKAERITNAQDLL---------------MEMQDNGVNPTVETFNTLI 267
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+A R Q E F VL ++++ G KP+ +YG ++ GK + K +
Sbjct: 268 DAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVL 327
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PNA Y +++ G D+A VE M+ GI S Y L + LC+ + EA
Sbjct: 328 PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEI 387
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV-TCNIMVKAYLE 242
++ + P VSY LI AC GNI A + +M + + V T + ++
Sbjct: 388 INSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGG 447
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA---EKRWDDL--E 297
G E L+Q+M +++ V+P N M++A + E + +DL E
Sbjct: 448 AGRLNEMEYLYQKMMQNN------------VVPSNAIHNIMVEAYSKYGNEIKAEDLRKE 495
Query: 298 LVYKRMLH 305
++ KR H
Sbjct: 496 MLQKRNNH 503
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/326 (21%), Positives = 128/326 (39%), Gaps = 29/326 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ +Y + + +AG + +V D M ER + P+ + YN ++
Sbjct: 13 PNAFSYNVVIAGMWRAGRGGDAVEVFDEMT------------ERA---VLPNHITYNTMI 57
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ ++ E F + Q+ G KP+A TY +++ + G+ ++ + +
Sbjct: 58 DGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMV 117
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y +L + L R G + +S + G+ L LC GK A
Sbjct: 118 PDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEV 177
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+ + P V Y LI +G ++ A F QMK+ P+ +T N ++ +
Sbjct: 178 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 237
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
A L EM ++ V P + TFNT++DA + + +V
Sbjct: 238 AERITNAQDLLMEMQDNG------------VNPTVETFNTLIDAYGRTGQLEKCFIVLSE 285
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV 328
M +GL N + ++ + GK+
Sbjct: 286 MQENGLKPNVVSYGSIVNAFCKNGKI 311
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 102/243 (41%), Gaps = 22/243 (9%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PNA +Y V++ +WR G+ +AV ++M R ++ + Y + G E
Sbjct: 13 PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 72
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
D++ KP ++Y L+ +G + + + ++M + P+ T +I+
Sbjct: 73 RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 132
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+G + + LF +Y K G+ I D YT + +L+ + + E V +
Sbjct: 133 NGDSKAMLSLFG-----------KYLKNGVTIGD-YTCSILLNGLCKDGKVSIAEEVLQS 180
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA----RADRITPPALIK-----ER 353
+++ GL + +I + G++E T+ + + D IT ALI ER
Sbjct: 181 LVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAER 240
Query: 354 FCN 356
N
Sbjct: 241 ITN 243
>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 997
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 147/333 (44%), Gaps = 35/333 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV Y + L +A +E D ++ MR+ T L P++V Y+ +L
Sbjct: 300 PDTVFYTKLISGLCEASLFEEAMDFLNRMRA-------TSCL--------PNVVTYSTLL 344
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
C+ +KQ VL + +G PS + ++ G ++ Y+ +K+ K ++
Sbjct: 345 CGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHM 404
Query: 124 PNALAYKVLVNTLWREGKT------DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
P + Y +L+ ++ + + D A A +M G+V + RCLCSAGK
Sbjct: 405 PGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKY 464
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIM 236
E+A + ++ P +Y+ ++ ++ ++ A +F +MK ++ T IM
Sbjct: 465 EKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIM 524
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
V ++ + GL E+A K F EM E P++ T+ ++ A K+
Sbjct: 525 VDSFCKAGLIEQARKWFNEMREVG------------CTPNVVTYTALIHAYLKAKKVSYA 572
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+++ ML G N + +I +AG+VE
Sbjct: 573 NELFETMLSEGCLPNIVTYSALIDGHCKAGQVE 605
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/318 (21%), Positives = 131/318 (41%), Gaps = 34/318 (10%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD Y+ VLN + E AF + +++K+ G TY ++++ G ++
Sbjct: 481 PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 540
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F ++++ PN + Y L++ + K A E M G + + Y L C
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 600
Query: 174 AGKCEEALMQMDKICKV----------------ANKPLVVSYTGLIQACLDSGNIQNAAY 217
AG+ E+A +++C + +P VV+Y L+ S ++ A
Sbjct: 601 AGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARK 660
Query: 218 IFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
+ + M C PN + + ++ + G +EA ++ EM+E
Sbjct: 661 LLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHG------------FPAT 708
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLE 332
+YT+++++D KR D V +ML + N + MI + GK + L++
Sbjct: 709 LYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQ 768
Query: 333 ITWEHLARADRITPPALI 350
+ E + + +T A+I
Sbjct: 769 MMEEKGCQPNVVTYTAMI 786
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 118/260 (45%), Gaps = 9/260 (3%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM---RSLPKKKFKTGTLERWDPRLE-PDIVVY 60
P+ V Y ++ +AG +++ + + M + +P +++D E P++V Y
Sbjct: 586 PNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDM---YFKQYDDNSERPNVVTY 642
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
A+L+ + + E A +L + +G +P+ Y +++ + GK + E ++ +
Sbjct: 643 GALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSE 702
Query: 121 SYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
P L Y L++ ++ + D A + M + +Y ++ LC GK +E
Sbjct: 703 HGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDE 762
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVK 238
A M + + +P VV+YT +I G I+ + +M + +PN VT +++
Sbjct: 763 AYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLID 822
Query: 239 AYLEHGLFEEAMKLFQEMAE 258
++G + A L +EM +
Sbjct: 823 HCCKNGALDVAHNLLEEMKQ 842
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 72/364 (19%), Positives = 145/364 (39%), Gaps = 50/364 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR-----------SLPKKKF-KTGTLE---RW 49
PDT Y + L A ++ F + + M+ ++ F K G +E +W
Sbjct: 481 PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 540
Query: 50 DPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ P++V Y A+++A ++ K+ A + + + +G P+ TY +++
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 600
Query: 105 CGKYNLVYEFFRKV-----------------QKSYIPNALAYKVLVNTLWREGKTDEAVS 147
G+ + F ++ S PN + Y L++ + + +EA
Sbjct: 601 AGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARK 660
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
++ M G + +Y L LC GK +EA ++ + + +Y+ LI
Sbjct: 661 LLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYF 720
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
A+ + ++M +N C+PN+V M+ + G +EA KL Q M E
Sbjct: 721 KVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQ---- 776
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
P++ T+ M+D + + + +RM G+ N + +I + G
Sbjct: 777 --------PNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNG 828
Query: 327 KVEL 330
+++
Sbjct: 829 ALDV 832
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 111/270 (41%), Gaps = 27/270 (10%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWV----LQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ D V+ LN VR+ G+F + L +LK +PS +TY +++ L + +
Sbjct: 193 DDDKEVFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLD 252
Query: 110 LVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
R++ + + + + +L + GK EA++ VE V Y L
Sbjct: 253 SASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVE---TENFVPDTVFYTKLI 309
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCS 227
LC A EEA+ ++++ + P VV+Y+ L+ CL+ + + N M C
Sbjct: 310 SGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCY 369
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P+ N +V AY G A KL ++M + + +P +N ++ +
Sbjct: 370 PSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGH------------MPGYVVYNILIGSI 417
Query: 288 AAEKR------WDDLELVYKRMLHHGLHFN 311
+K D E Y ML G+ N
Sbjct: 418 CGDKDSLNCDLLDLAEKAYSEMLAAGVVLN 447
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 42/255 (16%), Positives = 97/255 (38%), Gaps = 51/255 (20%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S P+ V Y + L + G E + ++ M + +P++V Y
Sbjct: 739 SCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMME---------------EKGCQPNVVTYT 783
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
A+++ + E +L+++ +G P+ TY ++++ G ++ + +++++
Sbjct: 784 AMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQT 843
Query: 122 YIPNALA----------------------------------YKVLVNTLWREGKTDEAVS 147
+ P A Y++L++ L + + + A+
Sbjct: 844 HWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALR 903
Query: 148 AVEDME--RRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+E++ +V ++ Y L LC A K E A ++ K P + S+ LI+
Sbjct: 904 LLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKG 963
Query: 206 CLDSGNIQNAAYIFN 220
+ I A + +
Sbjct: 964 LFRNSKISEALLLLD 978
>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06710, mitochondrial; Flags: Precursor
gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
Length = 987
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 147/333 (44%), Gaps = 35/333 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV Y + L +A +E D ++ MR+ T L P++V Y+ +L
Sbjct: 300 PDTVFYTKLISGLCEASLFEEAMDFLNRMRA-------TSCL--------PNVVTYSTLL 344
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
C+ +KQ VL + +G PS + ++ G ++ Y+ +K+ K ++
Sbjct: 345 CGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHM 404
Query: 124 PNALAYKVLVNTLWREGKT------DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
P + Y +L+ ++ + + D A A +M G+V + RCLCSAGK
Sbjct: 405 PGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKY 464
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIM 236
E+A + ++ P +Y+ ++ ++ ++ A +F +MK ++ T IM
Sbjct: 465 EKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIM 524
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
V ++ + GL E+A K F EM E P++ T+ ++ A K+
Sbjct: 525 VDSFCKAGLIEQARKWFNEMREVG------------CTPNVVTYTALIHAYLKAKKVSYA 572
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+++ ML G N + +I +AG+VE
Sbjct: 573 NELFETMLSEGCLPNIVTYSALIDGHCKAGQVE 605
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/318 (21%), Positives = 131/318 (41%), Gaps = 34/318 (10%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD Y+ VLN + E AF + +++K+ G TY ++++ G ++
Sbjct: 481 PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 540
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F ++++ PN + Y L++ + K A E M G + + Y L C
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 600
Query: 174 AGKCEEALMQMDKICKV----------------ANKPLVVSYTGLIQACLDSGNIQNAAY 217
AG+ E+A +++C + +P VV+Y L+ S ++ A
Sbjct: 601 AGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARK 660
Query: 218 IFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
+ + M C PN + + ++ + G +EA ++ EM+E
Sbjct: 661 LLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHG------------FPAT 708
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLE 332
+YT+++++D KR D V +ML + N + MI + GK + L++
Sbjct: 709 LYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQ 768
Query: 333 ITWEHLARADRITPPALI 350
+ E + + +T A+I
Sbjct: 769 MMEEKGCQPNVVTYTAMI 786
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 121/264 (45%), Gaps = 17/264 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM---RSLPKKKFKTGTLERWDPRLE-PDIVVY 60
P+ V Y ++ +AG +++ + + M + +P +++D E P++V Y
Sbjct: 586 PNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDM---YFKQYDDNSERPNVVTY 642
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
A+L+ + + E A +L + +G +P+ Y +++ + GK + E ++ +
Sbjct: 643 GALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSE 702
Query: 121 SYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
P L Y L++ ++ + D A + M + +Y ++ LC GK +E
Sbjct: 703 HGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDE 762
Query: 180 A--LMQM--DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCN 234
A LMQM +K C+ P VV+YT +I G I+ + +M +PN VT
Sbjct: 763 AYKLMQMMEEKGCQ----PNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYR 818
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAE 258
+++ ++G + A L +EM +
Sbjct: 819 VLIDHCCKNGALDVAHNLLEEMKQ 842
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 72/364 (19%), Positives = 145/364 (39%), Gaps = 50/364 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR-----------SLPKKKF-KTGTLE---RW 49
PDT Y + L A ++ F + + M+ ++ F K G +E +W
Sbjct: 481 PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 540
Query: 50 DPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ P++V Y A+++A ++ K+ A + + + +G P+ TY +++
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 600
Query: 105 CGKYNLVYEFFRKV-----------------QKSYIPNALAYKVLVNTLWREGKTDEAVS 147
G+ + F ++ S PN + Y L++ + + +EA
Sbjct: 601 AGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARK 660
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
++ M G + +Y L LC GK +EA ++ + + +Y+ LI
Sbjct: 661 LLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYF 720
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
A+ + ++M +N C+PN+V M+ + G +EA KL Q M E
Sbjct: 721 KVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQ---- 776
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
P++ T+ M+D + + + +RM G+ N + +I + G
Sbjct: 777 --------PNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNG 828
Query: 327 KVEL 330
+++
Sbjct: 829 ALDV 832
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 111/270 (41%), Gaps = 27/270 (10%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWV----LQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ D V+ LN VR+ G+F + L +LK +PS +TY +++ L + +
Sbjct: 193 DDDKEVFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLD 252
Query: 110 LVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
R++ + + + + +L + GK EA++ VE V Y L
Sbjct: 253 SASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVE---TENFVPDTVFYTKLI 309
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCS 227
LC A EEA+ ++++ + P VV+Y+ L+ CL+ + + N M C
Sbjct: 310 SGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCY 369
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P+ N +V AY G A KL ++M + + +P +N ++ +
Sbjct: 370 PSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGH------------MPGYVVYNILIGSI 417
Query: 288 AAEKR------WDDLELVYKRMLHHGLHFN 311
+K D E Y ML G+ N
Sbjct: 418 CGDKDSLNCDLLDLAEKAYSEMLAAGVVLN 447
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/263 (16%), Positives = 100/263 (38%), Gaps = 51/263 (19%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S P+ V Y + L + G E + ++ M + +P++V Y
Sbjct: 739 SCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMME---------------EKGCQPNVVTYT 783
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
A+++ + E +L+++ +G P+ TY ++++ G ++ + +++++
Sbjct: 784 AMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQT 843
Query: 122 YIPNALA----------------------------------YKVLVNTLWREGKTDEAVS 147
+ P A Y++L++ L + + + A+
Sbjct: 844 HWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALR 903
Query: 148 AVEDME--RRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+E++ +V ++ Y L LC A K E A ++ K P + S+ LI+
Sbjct: 904 LLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKG 963
Query: 206 CLDSGNIQNAAYIFNQMKNFCSP 228
+ I A + + + + P
Sbjct: 964 LFRNSKISEALLLLDFISHMVCP 986
>gi|242050640|ref|XP_002463064.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
gi|241926441|gb|EER99585.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
Length = 558
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 138/331 (41%), Gaps = 36/331 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR--SLPKKKFK-------TGTLERWDPRLE- 54
PDT Y S+ +AG + +++D M+ ++P + G W LE
Sbjct: 186 PDTDTYNSLIHAHARAGQWRWAINIMDDMQRAAIPPSRTTYNNVINACGAAGNWKKALEL 245
Query: 55 ----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
PD++ +N VL+A Q+ A + +K P T +V+ ++
Sbjct: 246 CKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVK 305
Query: 105 CGKYNLVYEFFRKVQKSYI---PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
Y E F +++ P+ + Y ++ + G+ + + + M G+ +
Sbjct: 306 VALYGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDMMVAEGVRPNI 365
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L S G EAL + + KP +VSYT L+ A S + A +FN+
Sbjct: 366 VSYNALLGAYASHGMHTEALETFKLLKQNGFKPDIVSYTSLLNAYGRSALPEKAREVFNE 425
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
M KN C PN V+ N ++ AY G+ +EA+ L EM +D + PD+ +
Sbjct: 426 MRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDG------------IQPDVISI 473
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
+T+L AC ++ + ++ G+ N
Sbjct: 474 STLLTACGRCRQPTKIGIILAAAKSRGIQLN 504
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/308 (21%), Positives = 134/308 (43%), Gaps = 19/308 (6%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
++ W R +PD YN++++A R QW A ++ +++ PS TTY V+ A
Sbjct: 179 MQEW--RCKPDTDTYNSLIHAHARAGQWRWAINIMDDMQRAAIPPSRTTYNNVINACGAA 236
Query: 106 GKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G + E +K+ ++ + P+ + + ++++ + +A++ E M+ +
Sbjct: 237 GNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTM 296
Query: 165 YDLARCLCSAGKCEEALMQMDKI--CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+ CL EA+ + + + P VV+YT ++ + G +N +F+ M
Sbjct: 297 NIVIHCLVKVALYGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDMM 356
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
PN+V+ N ++ AY HG+ EA++ F+ + ++ PDI ++
Sbjct: 357 VAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNG------------FKPDIVSYT 404
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
++L+A + V+ M + N K ++DA + + I+ H
Sbjct: 405 SLLNAYGRSALPEKAREVFNEMRKNACKPN-KVSYNALIDAYGSAGMLKEAISLLHEMEQ 463
Query: 342 DRITPPAL 349
D I P +
Sbjct: 464 DGIQPDVI 471
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 100/234 (42%), Gaps = 14/234 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V Y +++ + Q E V + +G +P+ +Y ++ + G + E
Sbjct: 328 PDVVTYTSIMYSYSVCGQAENCKAVFDMMVAEGVRPNIVSYNALLGAYASHGMHTEALET 387
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F+ + Q + P+ ++Y L+N R ++A +M + + Y L S
Sbjct: 388 FKLLKQNGFKPDIVSYTSLLNAYGRSALPEKAREVFNEMRKNACKPNKVSYNALIDAYGS 447
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVT 232
AG +EA+ + ++ + +P V+S + L+ AC I K+ N V
Sbjct: 448 AGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCRQPTKIGIILAAAKSRGIQLNTVA 507
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
N + +YL G +++A++L+ M + G V PD T+N ++
Sbjct: 508 YNSGIGSYLSLGDYKKALELYTSM------------RTGNVKPDAVTYNILISG 549
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 14/190 (7%)
Query: 97 LVMEVMLACGKYNLVYEF-FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERR 155
L+ E+ ++ + V+ F + K+Q++Y Y +++ R + D+A +M+
Sbjct: 123 LIREITISGSLKHAVHVFRWMKIQENYCARNDIYGMMIRLHARHNQVDQARGLFFEMQEW 182
Query: 156 GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA 215
Y L AG+ A+ MD + + A P +Y +I AC +GN + A
Sbjct: 183 RCKPDTDTYNSLIHAHARAGQWRWAINIMDDMQRAAIPPSRTTYNNVINACGAAGNWKKA 242
Query: 216 AYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI 274
+ +M +N P+L+T NI++ A+ + +A+ F+ M K V
Sbjct: 243 LELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIM------------KSSKVA 290
Query: 275 PDIYTFNTML 284
PD T N ++
Sbjct: 291 PDTCTMNIVI 300
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 16/131 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V+Y ++ G AG +KE ++ M ++PD++ + +L
Sbjct: 433 PNKVSYNALIDAYGSAGMLKEAISLLHEME---------------QDGIQPDVISISTLL 477
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
AC R +Q +L K +G + + Y + L+ G Y E + ++ +
Sbjct: 478 TACGRCRQPTKIGIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALELYTSMRTGNVK 537
Query: 124 PNALAYKVLVN 134
P+A+ Y +L++
Sbjct: 538 PDAVTYNILIS 548
>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Vitis vinifera]
Length = 778
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/313 (21%), Positives = 136/313 (43%), Gaps = 34/313 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTLERW------------- 49
PD V+Y ++ + I E F +++ M + + + +W
Sbjct: 346 PDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNT 405
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ PD V YN ++N + AF + ++ ++ K + T ++ +
Sbjct: 406 ITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCR 465
Query: 105 CGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
K Y+ +K Y + ++Y L+ +++G D A+ ++M+ + I+ S
Sbjct: 466 EKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVT 525
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y + LC GK E+A+ +++++ + P +Y ++ G+++ A N+M
Sbjct: 526 YNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMV 585
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+N P++ TCNI+++ G+ E+A+KLF + KG I D T+NT
Sbjct: 586 ENSFKPDVFTCNILLRGLCMEGVLEKALKLFN-----------TWVSKGKAI-DTVTYNT 633
Query: 283 MLDACAAEKRWDD 295
++ + E R DD
Sbjct: 634 LITSLCKEGRLDD 646
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 104/238 (43%), Gaps = 15/238 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++ +N V+ +++ A L + + P TY +++ + G+ +
Sbjct: 206 PNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDL 265
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ + +PN Y +LV + G EA + +E M + ++ Y L LC+
Sbjct: 266 LMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCN 325
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+ EEA D++ + P VVSY LI CL+ I A + +M + PN VT
Sbjct: 326 EGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVT 385
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAA 289
NIMVK Y + G ++A +M E PD T+NT+++ C A
Sbjct: 386 HNIMVKWYCKEGKMDDASNTITKMEESG------------FSPDCVTYNTLINGYCKA 431
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 139/329 (42%), Gaps = 32/329 (9%)
Query: 19 QAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFW 78
Q+G F + M+ L RL P+++ N +LN+ VR +
Sbjct: 147 QSGQPHHAFQIFKKMKRL---------------RLRPNLLTCNTLLNSLVRYPSSHSVSF 191
Query: 79 VLQQLK---QQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVN 134
+ + G P+ T+ +V+ K+ EF + K + P+ + Y +++
Sbjct: 192 SREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILD 251
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194
TL ++G+ +A + DM+ RG++ + Y L C G +EA ++ + + P
Sbjct: 252 TLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLP 311
Query: 195 LVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLF 253
V +Y LI + G I+ A + ++M+N P++V+ N ++ LE EA KL
Sbjct: 312 DVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLL 371
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK 313
+EM+E KG V P+ T N M+ E + DD +M G +
Sbjct: 372 EEMSE-----------KG-VKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCV 419
Query: 314 RHLRMILDASRAGKVELLEITWEHLARAD 342
+ +I +AG + T + + R +
Sbjct: 420 TYNTLINGYCKAGNMGEAFRTMDEMGRKN 448
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 99/238 (41%), Gaps = 21/238 (8%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLER----W 49
D+V +I TL + ++E + ++ S R +L FK G ++R W
Sbjct: 452 DSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLW 511
Query: 50 DPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
D E P V YN ++ + + E A L +L + G P TTY ++
Sbjct: 512 DEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCRE 571
Query: 106 GKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G ++F K V+ S+ P+ +L+ L EG ++A+ +G Y
Sbjct: 572 GDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTY 631
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
L LC G+ ++A + ++ + P +Y +I A DSG I+ A ++M
Sbjct: 632 NTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKM 689
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 109/252 (43%), Gaps = 19/252 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y +I TL + G + + D++ M+S L P+ YN ++
Sbjct: 241 PDNVTYNTILDTLCKKGRLGDARDLLMDMKS---------------RGLLPNRNTYNILV 285
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ + A V++ + Q P TY +++ + G+ ++ +++ +
Sbjct: 286 YGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLL 345
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++Y L+N K EA +E+M +G+ +A + + + C GK ++A
Sbjct: 346 PDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNT 405
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
+ K+ + P V+Y LI +GN+ A ++M KN + VT N +++
Sbjct: 406 ITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNM-KMDSVTLNTILRTLC 464
Query: 242 EHGLFEEAMKLF 253
EEA KL
Sbjct: 465 REKKLEEAYKLL 476
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 78/191 (40%), Gaps = 16/191 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P TV Y I L Q G ++ ++ + ++G L PD YN +L
Sbjct: 521 PSTVTYNCIIGGLCQCGKTEQAISKLNEL-------LESGLL--------PDETTYNTIL 565
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ R E AF ++ + KP T +++ + G + F V K
Sbjct: 566 HGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKA 625
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y L+ +L +EG+ D+A + + +ME + + Y + L +G+ EA
Sbjct: 626 IDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEF 685
Query: 184 MDKICKVANKP 194
M K+ + N P
Sbjct: 686 MSKMLEKGNLP 696
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 58/136 (42%), Gaps = 24/136 (17%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D V YN ++ + + + + AF +L +++++ P TY ++ + G+ EF
Sbjct: 627 DTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFM 686
Query: 116 RK-VQKSYIPN-----------------------ALAYKVLVNTLWREGKTDEAVSAVED 151
K ++K +P+ ++AY + L EGK +A+ +
Sbjct: 687 SKMLEKGNLPDQVLQLDKNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGE 746
Query: 152 MERRGIVGSAALYYDL 167
+++GI + Y +L
Sbjct: 747 SKQKGITVDKSTYINL 762
>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
Length = 497
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 140/316 (44%), Gaps = 49/316 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKE----LFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
P+ V Y ++ L + G +K+ L D+ID K GT PD+++Y
Sbjct: 216 PNVVTYGTLIDGLCKVGRVKDACAMLADMID----------KGGT---------PDLMIY 256
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ- 119
N ++N + Q + + +L++ G KP TY V+ + + + V+
Sbjct: 257 NMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKS 316
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ P+ + Y L++ L + GK DEA E M G Y L LC AG+ +E
Sbjct: 317 RGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDE 376
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A + + ++ ++ P ++Y LI+ D ++ A + +M ++ C+P+ VT NI++
Sbjct: 377 AHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILI- 435
Query: 239 AYLEHGLF------EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
HG+ A+ FQEM ++ VIPD T++ +L+ K
Sbjct: 436 ----HGMCRMERVDSAALDYFQEMIDNG------------VIPDHITYSILLEGLKKSKD 479
Query: 293 WDDLE-LVYKRMLHHG 307
+L LV +M+ G
Sbjct: 480 LHELRHLVLDQMVQLG 495
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 127/297 (42%), Gaps = 16/297 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P +V YN +L+ R + E A + Q++ + + ++ +++ + GK EF
Sbjct: 43 PSMVTYNTLLDGLFRTGKLERAMALFQEMLDR-RSHDVISFNILVTGLCRAGKIETALEF 101
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
FRK+ PN + Y VL++ L + + +AV +E M+ RG Y L LC
Sbjct: 102 FRKMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKE 161
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTC 233
K A + ++ P +V+Y L+ + + +A + M C+PN+VT
Sbjct: 162 SKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTY 221
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
++ + G ++A + +M DK G PD+ +N +++ +
Sbjct: 222 GTLIDGLCKVGRVKDACAMLADM----------IDKGG--TPDLMIYNMLINGLCKADQV 269
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
D+ + +R + G+ + + +I R+ +++ E L R PP +I
Sbjct: 270 DESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLD--EACRLLLYVKSRGCPPDVI 324
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 124/297 (41%), Gaps = 49/297 (16%)
Query: 48 RWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK 107
+ D R P+++ Y+ +++ + + A +L+ +K +G P TY ++++ + K
Sbjct: 104 KMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESK 163
Query: 108 YNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
+E R+ + +PN + Y L++ L R + +A++ + DM RG + Y
Sbjct: 164 VAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGT 223
Query: 167 LARCLCSAGKCEEAL-------------------MQMDKICKVAN--------------- 192
L LC G+ ++A M ++ +CK
Sbjct: 224 LIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGG 283
Query: 193 -KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAM 250
KP VV+Y+ +I S + A + +K+ C P+++ + ++ + G +EA
Sbjct: 284 IKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAF 343
Query: 251 KLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
L++ M D D+ T++T++D R D+ L+ RM+ G
Sbjct: 344 DLYEVMTGDGCD------------ADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMG 388
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 66/149 (44%), Gaps = 14/149 (9%)
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
M G + Y L LC + + A + + V P +V+Y L+ +G
Sbjct: 1 MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60
Query: 212 IQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKG 271
++ A +F +M + S ++++ NI+V G E A++ F++M + +
Sbjct: 61 LERAMALFQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCS---------- 110
Query: 272 LVIPDIYTFNTMLDA-CAAEKRWDDLELV 299
P++ T++ ++D C A + +EL+
Sbjct: 111 ---PNVITYSVLIDGLCKANRVSQAVELL 136
>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 120/253 (47%), Gaps = 14/253 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP IV +++LN K+ A ++ Q+ + G +P T+ ++ + K +
Sbjct: 77 EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 136
Query: 114 FF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R VQ+ PN + Y V+VN L + G D A + + ME I ++ + LC
Sbjct: 137 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLC 196
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
++AL ++ +P VV+Y+ LI G +A+ + + M + +PNLV
Sbjct: 197 KYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 256
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ A+++ G F EA KL +M I R D PDI+T+N++++
Sbjct: 257 TFNALIDAFVKEGKFVEAEKLHDDM------IKRSID------PDIFTYNSLINGFCMHD 304
Query: 292 RWDDLELVYKRML 304
R D + +++ M+
Sbjct: 305 RLDKAKQMFEFMV 317
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/327 (19%), Positives = 143/327 (43%), Gaps = 29/327 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y + L + G I F++++ M + ++E D+V++N ++
Sbjct: 148 PNLVTYGVVVNGLCKRGDIDLAFNLLNKMEA---------------AKIEADVVIFNTII 192
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
++ + + + A + ++++ +G +P+ TY ++ + + G+++ + ++K
Sbjct: 193 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN 252
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + L++ +EGK EA +DM +R I Y L C + ++A
Sbjct: 253 PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 312
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+ + P + +Y LI+ S +++ +F +M + + VT +++
Sbjct: 313 FEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 372
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + A K+F++M D V PDI T++ +LD + + V+
Sbjct: 373 DGDCDNAQKVFKQMVSDG------------VPPDIMTYSILLDGLCNNGKLEKALEVFDY 420
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
M + + + MI +AGKV+
Sbjct: 421 MQKSEIKLDIYIYTTMIEGMCKAGKVD 447
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 112/278 (40%), Gaps = 57/278 (20%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLA 104
+ ++ P++V +NA+++A V+ ++ A + + ++ P TY G M L
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRL- 306
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
K ++EF V K P+ Y L+ + + ++ +M RG+VG Y
Sbjct: 307 -DKAKQMFEFM--VSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 363
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
L + L G C+ A ++ P +++Y+ L+ ++G ++ A +F+ M+
Sbjct: 364 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 423
Query: 225 -----------------------------FCS-------PNLVTCNIMVKAYLEHGLFEE 248
FCS PN+VT N M+ L +E
Sbjct: 424 SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQE 483
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
A L ++M ED +PD T+NT++ A
Sbjct: 484 AYALLKKMKEDGP------------LPDSGTYNTLIRA 509
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/259 (19%), Positives = 118/259 (45%), Gaps = 14/259 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P I +N +L+A + K+++ + +++++ G + TY +++ + +L
Sbjct: 8 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y P+ + L+N + +AV+ V+ M G + L L
Sbjct: 68 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
K EA+ +D++ + +P +V+Y ++ G+I A + N+M+ ++V
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ + ++ ++A+ LF+EM + KG + P++ T+++++ + R
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEM-----------ETKG-IRPNVVTYSSLISCLCSYGR 235
Query: 293 WDDLELVYKRMLHHGLHFN 311
W D + M+ ++ N
Sbjct: 236 WSDASQLLSDMIEKKINPN 254
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 9/210 (4%)
Query: 24 KELFDVIDSMRSLPK-----KKFKTGT---LERWDPRLEPDIVVYNAVLNACVRRKQWEG 75
K+ F +D+ +L K K+ + GT E L D V Y ++ +
Sbjct: 319 KDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDN 378
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP-NALAYKVLVN 134
A V +Q+ G P TY ++++ + GK E F +QKS I + Y ++
Sbjct: 379 AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIE 438
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194
+ + GK D+ + +G+ + Y + LCS +EA + K+ + P
Sbjct: 439 GMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLP 498
Query: 195 LVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
+Y LI+A L G+ +A + +M++
Sbjct: 499 DSGTYNTLIRAHLRDGDKAASAELIREMRS 528
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 90/238 (37%), Gaps = 48/238 (20%)
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
V+ +P+ + L++ + + K D +S E M+R GI + Y L C C +
Sbjct: 2 VKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQI 61
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--------------- 222
AL + K+ K+ +P +V+ + L+ I +A + +QM
Sbjct: 62 SLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTL 121
Query: 223 ---------------------KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSN 261
+ C PNLVT ++V + G + A L +M
Sbjct: 122 IHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM----- 176
Query: 262 HINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
+ + D+ FNT++D+ + DD ++K M G+ N + +I
Sbjct: 177 -------EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLI 227
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/161 (19%), Positives = 71/161 (44%), Gaps = 20/161 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLER-WD- 50
PD + Y + L G +++ +V D M+ ++ + K G ++ WD
Sbjct: 393 PDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 452
Query: 51 ------PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
++P++V YN +++ ++ + A+ +L+++K+ G P + TY ++ L
Sbjct: 453 FCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLR 512
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEA 145
G E R+++ + LV + +G+ D++
Sbjct: 513 DGDKAASAELIREMRSCRFVGDASTIGLVANMLHDGRLDKS 553
>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 772
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 136/285 (47%), Gaps = 14/285 (4%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + +E D+ VY+++++ R + AF + ++ Q+ P+A TYG ++ + G
Sbjct: 312 EMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAG 371
Query: 107 KYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ ++Q + N + + ++ R GK DEA+ ME++GI Y
Sbjct: 372 QMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYN 431
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KN 224
LA LC + +EA ++ + + KP VV++T I+ GN+ A +F M K
Sbjct: 432 ILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKK 491
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
PN++T N ++ AY + ++A K+ EM IN KGL +PD+YT+++++
Sbjct: 492 GEVPNIITYNTLIDAYCKKEKVKQAHKIKSEM------IN-----KGL-LPDLYTYSSLI 539
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
R D+ ++ M G+ N + MI S+ G+ +
Sbjct: 540 HGECIVGRVDEALKLFNEMRLKGITRNVATYTSMISGLSKEGRAD 584
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 105/243 (43%), Gaps = 14/243 (5%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
LE ++ ++V++N ++ RR + + A + ++++G TY ++ +
Sbjct: 381 LEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKL 440
Query: 106 GKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
+Y+ V+K PN + + + + +EG EA DME++G V + Y
Sbjct: 441 HRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITY 500
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK- 223
L C K ++A ++ P + +Y+ LI G + A +FN+M+
Sbjct: 501 NTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRL 560
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
+ N+ T M+ + G +EA KL+ EM K GL IPD F ++
Sbjct: 561 KGITRNVATYTSMISGLSKEGRADEAFKLYDEMM-----------KIGL-IPDDRVFTSL 608
Query: 284 LDA 286
+ +
Sbjct: 609 VGS 611
>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
Length = 1116
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 158/365 (43%), Gaps = 43/365 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD++ Y S+ L +A + ++ ++S WDP D V YN ++
Sbjct: 670 PDSITYGSLVYALCRASRTDDALQLVSELKSF-----------GWDP----DTVTYNILV 714
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN----LVYEFFRKVQK 120
+ + Q E A VL+++ +G P TY +++ + G L + +V +
Sbjct: 715 DGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSR 774
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG--IVGSAALYYDLARCLCSAGKCE 178
+PN + Y VL+N L + G+ DEA +++M R+ ++ + Y LC
Sbjct: 775 CCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMA 834
Query: 179 EA--LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNI 235
EA LM+ + + P V+++ LI G A +F+ M PN+VT N+
Sbjct: 835 EACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNV 894
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWD 294
++ + E A + + M + KG V PD+ T++ ++DA C A +
Sbjct: 895 LMNGLCKTDKMERAHAMIESMVD-----------KG-VTPDVITYSVLVDAFCKASHVDE 942
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMI---LDASRAGKVELL--EITWEHLARADRITPPAL 349
LEL++ M G N +I + ++G+ + ++T +H D+IT L
Sbjct: 943 ALELLHG-MASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTL 1001
Query: 350 IKERF 354
I F
Sbjct: 1002 IDGLF 1006
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 137/314 (43%), Gaps = 25/314 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P IV YN ++N + + + ++L ++G P TY +++ + G
Sbjct: 212 VAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEAR 271
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG--IVGSAALYYDLAR 169
+ +S +PN + Y VL+N L + G+ DEA +++M R+ ++ + Y
Sbjct: 272 RLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLD 331
Query: 170 CLCSAGKCEEA--LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
LC EA LM+ + + P V+++ LI G I A +F+ M
Sbjct: 332 GLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGY 391
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
PN++T N +V + E A + + M + KG V PD+ T++ ++DA
Sbjct: 392 VPNVITYNALVNGLCKADKMERAHAMIESMVD-----------KG-VTPDVITYSVLVDA 439
Query: 287 -CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI---LDASRAGKVELL--EITWEHLAR 340
C A + + LEL++ M G N +I + R+G+ + ++ +H
Sbjct: 440 FCKASRVDEALELLHG-MASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLV 498
Query: 341 ADRITPPALIKERF 354
D+IT LI F
Sbjct: 499 PDKITYCTLIDGLF 512
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 142/319 (44%), Gaps = 27/319 (8%)
Query: 5 PDTVAYRSIAVTL---GQAGHIKELFDVIDS---------MRSLPKKKFKTGTLERWDPR 52
PD + Y ++ L G+AG + L D + + L K + L+ ++
Sbjct: 499 PDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRM 558
Query: 53 LE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY 108
LE PD V +N ++ + +E A + +++ + +P T+G +++ + G+
Sbjct: 559 LELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQV 618
Query: 109 NLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ + +P N + Y LV+ L + G+ +EA +E+M G V + Y L
Sbjct: 619 EAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSL 678
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
LC A + ++AL + ++ P V+Y L+ SG + A + +M
Sbjct: 679 VYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGH 738
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
P++VT N ++ + + G EEA +L +M S+ ++R +P++ T++ +++
Sbjct: 739 HPDVVTYNTLIDSLCKAGDLEEARRLHGDM---SSRVSR------CCVPNVVTYSVLING 789
Query: 287 CAAEKRWDDLELVYKRMLH 305
R D+ + + M+
Sbjct: 790 LCKVGRIDEARELIQEMMR 808
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 139/358 (38%), Gaps = 38/358 (10%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S P+ V Y + L + G I E ++I M R + P+I+ YN
Sbjct: 281 SCVPNVVTYSVLINGLCKVGRIDEARELIQEMT-------------RKSCDVLPNIITYN 327
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQK--PSATTYGLVMEVMLACGKYNLVYEFFRK-V 118
+ L+ ++ A +++ L+ + P T+ +++ + CG+ + F +
Sbjct: 328 SFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMI 387
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
Y+PN + Y LVN L + K + A + +E M +G+ Y L C A + +
Sbjct: 388 AGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVD 447
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIM 236
EAL + + P VV++ +I S A +F+ M K+ P+ +T +
Sbjct: 448 EALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTL 507
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ G +A L M + PD Y FN ++ +
Sbjct: 508 IDGLFRTGRAGQAEALLDAMPD----------------PDTYAFNCCINGLSKLGDVSRA 551
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA----RADRITPPALI 350
VY RML L + +I A +AG E +E + + D +T ALI
Sbjct: 552 LQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALI 609
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/379 (21%), Positives = 150/379 (39%), Gaps = 49/379 (12%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---------------LPKKKFKTGTLE- 47
+PD V Y ++ +L +AG ++E + M S L K G ++
Sbjct: 739 HPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDE 798
Query: 48 ---------RWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK--PSATTYG 96
R + P+I+ YN+ L+ ++ A +++ L+ + P T+
Sbjct: 799 ARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFS 858
Query: 97 LVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERR 155
+++ + CG+ + F + Y+PN + Y VL+N L + K + A + +E M +
Sbjct: 859 TLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDK 918
Query: 156 GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA 215
G+ Y L C A +EAL + + P VV++ +I S A
Sbjct: 919 GVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEA 978
Query: 216 AYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE-DSNHIN---REYDK 269
+F+ M K+ +P+ +T ++ G +A L M + D+ N K
Sbjct: 979 FQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPDPDTYAFNCCINGLSK 1038
Query: 270 KGLV------------IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
G V +PD TFN ++ ++ +++ M+ L +
Sbjct: 1039 LGDVSRALHRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGA 1098
Query: 318 MILDASRAGKVELLEITWE 336
+I +AG+V E TW+
Sbjct: 1099 LIDGLCKAGQV---EATWD 1114
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 82/402 (20%), Positives = 155/402 (38%), Gaps = 77/402 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERW--- 49
PDTV + ++ L + G I E V D M +L K +ER
Sbjct: 358 PDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAM 417
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
D + PD++ Y+ +++A + + + A +L + +G P+ T+ +++ +
Sbjct: 418 IESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCK 477
Query: 105 CGKYNLVYEFFRK--VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM---------- 152
+ ++ F ++ +P+ + Y L++ L+R G+ +A + ++ M
Sbjct: 478 SDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNC 537
Query: 153 -----ERRGIVGSAALYYD----------------LARCLCSAGKCEEALMQMDKICKVA 191
+ G V A Y+ L C AG E+A +++
Sbjct: 538 CINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKN 597
Query: 192 NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAM 250
+P V+++ LI +G ++ A I + M N PN+VT N +V + G EEA
Sbjct: 598 LQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEAC 657
Query: 251 KLFQEMAEDSN---------------HINREYDKKGLVI--------PDIYTFNTMLDAC 287
+ +EM +R D LV PD T+N ++D
Sbjct: 658 QFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGL 717
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + V + M+ G H + + +I +AG +E
Sbjct: 718 WKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLE 759
>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 168/377 (44%), Gaps = 48/377 (12%)
Query: 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACV 68
++ ++ + LG+ FD++D R + K +G + P ++ +N ++N
Sbjct: 169 SFTTLLIQLGK-------FDMVDLARDMYIKMLNSG--------IRPSLLTFNTMINILC 213
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF---RKVQKSYIPN 125
++ + + A ++ + + P+A TY + ++ C +NL F R V+ PN
Sbjct: 214 KKGRVQEAKLIMSHIFRYDAYPNAFTYTSL--ILGHCRNHNLDLAFAMFDRMVKDGCDPN 271
Query: 126 ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMD 185
++ Y L+N L EG+ +EA+ +E+M ++GI + Y LC AG EA+ +
Sbjct: 272 SVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLG 331
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHG 244
K+ K P + ++T LI G + A ++++M + P VT N ++ G
Sbjct: 332 KMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEG 391
Query: 245 LFEEAMKLFQEM--------AEDSNHINREY-----DKKGLVI----------PDIYTFN 281
FE A +F+ M + N I + + +K +VI P++ T+N
Sbjct: 392 RFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYN 451
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLEITWEH 337
T++ + ++ + + M +GL +A + +I SR GK+E L EH
Sbjct: 452 TLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEH 511
Query: 338 LARADRITPPALIKERF 354
+ +T A+I F
Sbjct: 512 GISPNHVTYTAIIDGYF 528
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 129/305 (42%), Gaps = 29/305 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P++V Y ++ L G ++E D+++ M +EP + Y L
Sbjct: 270 PNSVTYSTLINGLCSEGRLEEAMDMLEEM---------------VQKGIEPTVYTYTIPL 314
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ A +L ++K++G P+ T+ ++ + GK+ + + K + +
Sbjct: 315 VSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLV 374
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y L+N L EG+ + A + + M G + S Y ++ +C C G ++A++
Sbjct: 375 PTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVI 434
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
DK+ K + P V++Y LI GN+ NA + MK N P+ T ++ +
Sbjct: 435 FDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSR 494
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G E A LF M E + P+ T+ ++D + DD ++ +
Sbjct: 495 GGKLEHATSLFYGMMEHG------------ISPNHVTYTAIIDGYFNLAKVDDALALFWK 542
Query: 303 MLHHG 307
M+ G
Sbjct: 543 MVESG 547
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/331 (22%), Positives = 135/331 (40%), Gaps = 29/331 (8%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S P T Y I G I++ + D M K G+ P+++ YN
Sbjct: 407 GSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKM-------LKAGS--------SPNVITYN 451
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
++ ++ A +L+ +K G KP A TY ++ GK F + +
Sbjct: 452 TLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEH 511
Query: 122 YI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
I PN + Y +++ + K D+A++ M G + S+ Y + EA
Sbjct: 512 GISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEA 571
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVK 238
K+ K P V++YT I +G A IF++M +N+ PNL T + ++
Sbjct: 572 ENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNY-FPNLYTYSSLIY 630
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G E+A +++ +A + H E P++ T+ T++ E R + +
Sbjct: 631 GLCQEGRAEDA-EMYNLLARLT-HYGCE--------PNVDTYTTLVKGLCGEGRCYEADQ 680
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ M GL + + + +++ + KVE
Sbjct: 681 LVVSMQKKGLQPSEEIYRALLIGECKNLKVE 711
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 108/257 (42%), Gaps = 18/257 (7%)
Query: 106 GKYNLVYEFFRKVQKSYI--PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ V +F ++ Y ++ L+ L + D A M GI S
Sbjct: 145 GEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLT 204
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
+ + LC G+ +EA + M I + P +YT LI + N+ A +F++M
Sbjct: 205 FNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMV 264
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
K+ C PN VT + ++ G EEAM + +EM + KG + P +YT+
Sbjct: 265 KDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQ-----------KG-IEPTVYTYTI 312
Query: 283 -MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
++ C A + +EL+ K M G N + +I SR GK E + I H A
Sbjct: 313 PLVSLCDAGCSSEAVELLGK-MKKRGCVPNIQTFTALISGLSRDGKFE-IAIGLYHKMLA 370
Query: 342 DRITPPALIKERFCNRL 358
D + P + N+L
Sbjct: 371 DGLVPTTVTYNALINQL 387
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 108/264 (40%), Gaps = 17/264 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P+ V Y A+++ + + A + ++ + G PS+ TY +++ +
Sbjct: 513 ISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAE 572
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F K V++ +PN + Y ++ L R G+T A +ME+R + Y L L
Sbjct: 573 NFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGL 632
Query: 172 CSAGKCEEALMQ--MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSP 228
C G+ E+A M + ++ +P V +YT L++ G A + M K P
Sbjct: 633 CQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQP 692
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEM--------AEDSNHINREYDKKGLVIPDIYTF 280
+ ++ ++ E A+ +F M D + K+ + F
Sbjct: 693 SEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIF 752
Query: 281 NTMLDACAAEKRWDDLELVYKRML 304
TML EK W+ E+V+ +L
Sbjct: 753 QTML-----EKHWNSDEVVWTVLL 771
>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Vitis vinifera]
Length = 877
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 136/289 (47%), Gaps = 15/289 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D + ++ AC++ + E A ++ K++G K A Y ++++ + NL E
Sbjct: 259 DHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELL 318
Query: 116 RKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
++ ++ ++P+ + ++ +G EA+ E+M G + + L + C+
Sbjct: 319 EEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQ 378
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTC 233
G + AL +KI + P V+Y+ LI+ C +SGNI+ A+ ++ QMK N P++
Sbjct: 379 GNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNV 438
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N +++ YL+ L+EEA KLF E + + +I+T+N M+ +
Sbjct: 439 NSLLRGYLKAPLWEEASKLFDEAVDCG-------------VANIFTYNIMMSWLCKGGKM 485
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARAD 342
D+ + M++ G+ N + MIL R G +++ + + D
Sbjct: 486 DEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARD 534
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 127/309 (41%), Gaps = 16/309 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P+ V Y+ ++ C E A + Q+K G PS ++ L +
Sbjct: 396 LFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEAS 455
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ F + + N Y ++++ L + GK DEA S +++M +G+V + Y D+ C
Sbjct: 456 KLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHC 515
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLV 231
G + A + KP VV+Y+ LI G+ + A +F+QM + +P
Sbjct: 516 RKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDF 575
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ + G EA + E+ IP T+N+++D E
Sbjct: 576 TFNTIINGLCKVGQMSEARDKLKNFLEEG------------FIPSCMTYNSIVDGFIKEG 623
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARAD---RITPPA 348
D VY+ M G+ N + +I ++ +++L T + + +T +
Sbjct: 624 NIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYS 683
Query: 349 LIKERFCNR 357
+ + FC R
Sbjct: 684 ALIDGFCKR 692
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/301 (20%), Positives = 133/301 (44%), Gaps = 17/301 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+P++V Y+ +++ ++ E A + Q+ P+ T+ ++ + G+ +
Sbjct: 535 LKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEAR 594
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ + +++ +IP+ + Y +V+ +EG D A++ +M G+ + Y L
Sbjct: 595 DKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGF 654
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C + + + AL D++ + + V +Y+ LI ++++A +F ++ SPN
Sbjct: 655 CKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNR 714
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAA 289
+ N M+ + + E A+ +++M D IP D+ T+ T++D
Sbjct: 715 IVYNSMISGFRDLNNMEAALVWYKKMINDR-------------IPCDLGTYTTLIDGLLK 761
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPAL 349
E R +Y ML G+ + ++ G++E E + R + +TP L
Sbjct: 762 EGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKN-MTPSVL 820
Query: 350 I 350
I
Sbjct: 821 I 821
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 101/237 (42%), Gaps = 17/237 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y S+ ++ I D MR + LE D+ Y+A++
Sbjct: 642 PNVVTYTSLINGFCKSNRIDLALKTRDEMR---------------EKGLELDVTAYSALI 686
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ +R+ E A + +L + G P+ Y ++ +++K+ IP
Sbjct: 687 DGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIP 746
Query: 125 NALA-YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
L Y L++ L +EG+ A +M +GIV ++ L LC+ G+ E A
Sbjct: 747 CDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKI 806
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKA 239
++++ + P V+ Y LI GN++ A + ++M + P+ VT +I++
Sbjct: 807 LEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILING 863
>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 168/377 (44%), Gaps = 48/377 (12%)
Query: 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACV 68
++ ++ + LG+ FD++D R + K +G + P ++ +N ++N
Sbjct: 169 SFTTLLIQLGK-------FDMVDLARDMYIKMLNSG--------IRPSLLTFNTMINILC 213
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF---RKVQKSYIPN 125
++ + + A ++ + + P+A TY + ++ C +NL F R V+ PN
Sbjct: 214 KKGRVQEAKLIMSHIFRYDAYPNAFTYTSL--ILGHCRNHNLDLAFAMFDRMVKDGCDPN 271
Query: 126 ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMD 185
++ Y L+N L EG+ +EA+ +E+M ++GI + Y LC AG EA+ +
Sbjct: 272 SVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLG 331
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHG 244
K+ K P + ++T LI G + A ++++M + P VT N ++ G
Sbjct: 332 KMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEG 391
Query: 245 LFEEAMKLFQEM--------AEDSNHINREY-----DKKGLVI----------PDIYTFN 281
FE A +F+ M + N I + + +K +VI P++ T+N
Sbjct: 392 RFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYN 451
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLEITWEH 337
T++ + ++ + + M +GL +A + +I SR GK+E L EH
Sbjct: 452 TLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEH 511
Query: 338 LARADRITPPALIKERF 354
+ +T A+I F
Sbjct: 512 GISPNHVTYTAIIDGYF 528
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 129/305 (42%), Gaps = 29/305 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P++V Y ++ L G ++E D+++ M +EP + Y L
Sbjct: 270 PNSVTYSTLINGLCSEGRLEEAMDMLEEM---------------VQKGIEPTVYTYTIPL 314
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ A +L ++K++G P+ T+ ++ + GK+ + + K + +
Sbjct: 315 VSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLV 374
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y L+N L EG+ + A + + M G + S Y ++ +C C G ++A++
Sbjct: 375 PTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVI 434
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
DK+ K + P V++Y LI GN+ NA + MK N P+ T ++ +
Sbjct: 435 FDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSR 494
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G E A LF M E + P+ T+ ++D + DD ++ +
Sbjct: 495 GGKLEHATSLFYGMMEHG------------ISPNHVTYTAIIDGYFNLAKVDDALALFWK 542
Query: 303 MLHHG 307
M+ G
Sbjct: 543 MVESG 547
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/331 (22%), Positives = 135/331 (40%), Gaps = 29/331 (8%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S P T Y I G I++ + D M K G+ P+++ YN
Sbjct: 407 GSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKM-------LKAGS--------SPNVITYN 451
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
++ ++ A +L+ +K G KP A TY ++ GK F + +
Sbjct: 452 TLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEH 511
Query: 122 YI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
I PN + Y +++ + K D+A++ M G + S+ Y + EA
Sbjct: 512 GISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEA 571
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVK 238
K+ K P V++YT I +G A IF++M +N+ PNL T + ++
Sbjct: 572 ENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNY-FPNLYTYSSLIY 630
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G E+A +++ +A + H E P++ T+ T++ E R + +
Sbjct: 631 GLCQEGRAEDA-EMYNLLARLT-HYGCE--------PNVDTYTTLVKGLCGEGRCYEADQ 680
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ M GL + + + +++ + KVE
Sbjct: 681 LVVSMQKKGLQPSEEIYRALLIGECKNLKVE 711
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 108/257 (42%), Gaps = 18/257 (7%)
Query: 106 GKYNLVYEFFRKVQKSYI--PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ V +F ++ Y ++ L+ L + D A M GI S
Sbjct: 145 GEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLT 204
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
+ + LC G+ +EA + M I + P +YT LI + N+ A +F++M
Sbjct: 205 FNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMV 264
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
K+ C PN VT + ++ G EEAM + +EM + KG + P +YT+
Sbjct: 265 KDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQ-----------KG-IEPTVYTYTI 312
Query: 283 -MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
++ C A + +EL+ K M G N + +I SR GK E + I H A
Sbjct: 313 PLVSLCDAGCSSEAVELLGK-MKKRGCVPNIQTFTALISGLSRDGKFE-IAIGLYHKMLA 370
Query: 342 DRITPPALIKERFCNRL 358
D + P + N+L
Sbjct: 371 DGLVPTTVTYNALINQL 387
>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
gi|194702156|gb|ACF85162.1| unknown [Zea mays]
gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
Length = 567
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 139/318 (43%), Gaps = 29/318 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + + K+ ++D M D PDIV YN VL
Sbjct: 199 PDVVTYTILLEATCKRSGYKQAMKLLDEMH---------------DKGCAPDIVTYNVVL 243
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N + + E A L+ L G +P+ +Y +V++ + ++ + ++ K
Sbjct: 244 NGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCP 303
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + +L++ L R G + A+ +E M + G ++ Y L C K +A+
Sbjct: 304 PNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEF 363
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
++ + P +VSY L+ A +G + A + +Q+K+ CSP L++ N ++ +
Sbjct: 364 VELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTK 423
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +EA++L EM KGL PDI T++T+ E R ++ + +
Sbjct: 424 AGKTKEALELLDEMT-----------SKGLQ-PDIITYSTIASGLCREDRIEEAVRTFCK 471
Query: 303 MLHHGLHFNAKRHLRMIL 320
+ G+ A + ++L
Sbjct: 472 VQDMGIRPTAALYNAILL 489
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 134/303 (44%), Gaps = 33/303 (10%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
+S PD + Y ++ AG + D+ R L D +EPD YN
Sbjct: 129 ASGPDVMVYNAMVAGYCGAGQL-------DAARRL-----------VADMPVEPDAYTYN 170
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-K 120
++ R + A VL+ + ++G P TY +++E Y + ++ K
Sbjct: 171 TLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDK 230
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
P+ + Y V++N + +EG+ ++A+ ++++ G + Y + + L +A + E+A
Sbjct: 231 GCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDA 290
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
M+++ P VV++ LI G ++ A + QM + C+PN ++ N ++ A
Sbjct: 291 EKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHA 350
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD-DLEL 298
+ + +AM+ + M + PDI ++NT+L A D +EL
Sbjct: 351 FCKQKKIHKAMEFVELMVSRGCY------------PDIVSYNTLLTALCRNGEVDVAIEL 398
Query: 299 VYK 301
+++
Sbjct: 399 LHQ 401
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/329 (22%), Positives = 138/329 (41%), Gaps = 64/329 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTL------------ERWDPR 52
PD V Y + + Q G ++ D ++ +++LP + T+ ERW+
Sbjct: 234 PDIVTYNVVLNGICQEGRVE---DAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDA 290
Query: 53 -----------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM-- 99
P++V +N +++ RR E A VL+Q+ Q G P++ +Y ++
Sbjct: 291 EKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHA 350
Query: 100 --------------EVMLACGKY-------------------NLVYEFFRKVQ-KSYIPN 125
E+M++ G Y ++ E +++ K P
Sbjct: 351 FCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPV 410
Query: 126 ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMD 185
++Y +++ L + GKT EA+ +++M +G+ Y +A LC + EEA+
Sbjct: 411 LISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFC 470
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHG 244
K+ + +P Y ++ NA +F M + C PN T I+V+ G
Sbjct: 471 KVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEG 530
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLV 273
L +EA +LF ++ +N++ KKG +
Sbjct: 531 LVKEARELFAQLC-SRGVVNKKLMKKGSI 558
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/302 (20%), Positives = 137/302 (45%), Gaps = 27/302 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN----L 110
PD++VYNA++ Q + A ++ + + P A TY ++ + G+ + +
Sbjct: 132 PDVMVYNAMVAGYCGAGQLDAARRLVADMPVE---PDAYTYNTLIRGLCGRGRTSNALAV 188
Query: 111 VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ + FR+ +P+ + Y +L+ + +A+ +++M +G Y +
Sbjct: 189 LEDMFRR---GCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNG 245
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPN 229
+C G+ E+A+ + + +P VSY +++ + ++A + +M + C PN
Sbjct: 246 ICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPN 305
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CA 288
+VT N+++ GL E AM++ ++M + P+ ++N +L A C
Sbjct: 306 VVTFNMLISFLCRRGLVEPAMEVLEQMPQYG------------CTPNSLSYNPLLHAFCK 353
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPA 348
+K +E V + M+ G + + + ++ R G+V+ + I H + D+ P
Sbjct: 354 QKKIHKAMEFV-ELMVSRGCYPDIVSYNTLLTALCRNGEVD-VAIELLHQLK-DKGCSPV 410
Query: 349 LI 350
LI
Sbjct: 411 LI 412
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 25/178 (14%)
Query: 4 YPDTVAYRSIAVTLGQAGHIK-------ELFD------------VIDSMRSLPKKKFKTG 44
YPD V+Y ++ L + G + +L D VID + K K
Sbjct: 373 YPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALE 432
Query: 45 TLERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
L+ + L+PDI+ Y+ + + R + E A +++ G +P+A Y ++ +
Sbjct: 433 LLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAIL--LG 490
Query: 104 ACGK---YNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
C + +N + F + +PN Y +LV L EG EA + RG+V
Sbjct: 491 LCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLVKEARELFAQLCSRGVV 548
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 27/184 (14%)
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAA---LYYDLARCLCSAGKCEEALMQMDKIC 188
L+ L G+T +A RR + S +Y + C AG+ + A +
Sbjct: 110 LIKKLCASGRTADA--------RRVLAASGPDVMVYNAMVAGYCGAGQLDAA---RRLVA 158
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFE 247
+ +P +Y LI+ G NA + M + C P++VT I+++A + ++
Sbjct: 159 DMPVEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYK 218
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
+AMKL EM +DK PDI T+N +L+ E R +D K + +G
Sbjct: 219 QAMKLLDEM----------HDKG--CAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYG 266
Query: 308 LHFN 311
N
Sbjct: 267 CEPN 270
>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
Length = 946
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 147/333 (44%), Gaps = 35/333 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV Y + L +A +E D ++ MR+ T L P++V Y+ +L
Sbjct: 259 PDTVFYTKLISGLCEASLFEEAMDFLNRMRA-------TSCL--------PNVVTYSTLL 303
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
C+ +KQ VL + +G PS + ++ G ++ Y+ +K+ K ++
Sbjct: 304 CGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHM 363
Query: 124 PNALAYKVLVNTLWREGKT------DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
P + Y +L+ ++ + + D A A +M G+V + RCLCSAGK
Sbjct: 364 PGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKY 423
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIM 236
E+A + ++ P +Y+ ++ ++ ++ A +F +MK ++ T IM
Sbjct: 424 EKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIM 483
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
V ++ + GL E+A K F EM E P++ T+ ++ A K+
Sbjct: 484 VDSFCKAGLIEQARKWFNEMREVG------------CTPNVVTYTALIHAYLKAKKVSYA 531
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+++ ML G N + +I +AG+VE
Sbjct: 532 NELFETMLSEGCLPNIVTYSALIDGHCKAGQVE 564
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/318 (21%), Positives = 131/318 (41%), Gaps = 34/318 (10%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD Y+ VLN + E AF + +++K+ G TY ++++ G ++
Sbjct: 440 PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 499
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F ++++ PN + Y L++ + K A E M G + + Y L C
Sbjct: 500 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 559
Query: 174 AGKCEEALMQMDKICKV----------------ANKPLVVSYTGLIQACLDSGNIQNAAY 217
AG+ E+A +++C + +P VV+Y L+ S ++ A
Sbjct: 560 AGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARK 619
Query: 218 IFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
+ + M C PN + + ++ + G +EA ++ EM+E
Sbjct: 620 LLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHG------------FPAT 667
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLE 332
+YT+++++D KR D V +ML + N + MI + GK + L++
Sbjct: 668 LYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQ 727
Query: 333 ITWEHLARADRITPPALI 350
+ E + + +T A+I
Sbjct: 728 MMEEKGCQPNVVTYTAMI 745
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 122/264 (46%), Gaps = 17/264 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM---RSLPKKKFKTGTLERWDPRLE-PDIVVY 60
P+ V Y ++ +AG +++ + + M + +P +++D E P++V Y
Sbjct: 545 PNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDM---YFKQYDDNSERPNVVTY 601
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
A+L+ + + E A +L + +G +P+ Y +++ + GK + E ++ +
Sbjct: 602 GALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSE 661
Query: 121 SYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
P L Y L++ ++ + D A + M + +Y ++ LC GK +E
Sbjct: 662 HGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDE 721
Query: 180 A--LMQM--DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCN 234
A LMQM +K C+ P VV+YT +I G I+ + +M + +PN VT
Sbjct: 722 AYKLMQMMEEKGCQ----PNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYR 777
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAE 258
+++ ++G + A L +EM +
Sbjct: 778 VLIDHCCKNGALDVAHNLLEEMKQ 801
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 72/364 (19%), Positives = 145/364 (39%), Gaps = 50/364 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR-----------SLPKKKF-KTGTLE---RW 49
PDT Y + L A ++ F + + M+ ++ F K G +E +W
Sbjct: 440 PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 499
Query: 50 DPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ P++V Y A+++A ++ K+ A + + + +G P+ TY +++
Sbjct: 500 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 559
Query: 105 CGKYNLVYEFFRKV-----------------QKSYIPNALAYKVLVNTLWREGKTDEAVS 147
G+ + F ++ S PN + Y L++ + + +EA
Sbjct: 560 AGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARK 619
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
++ M G + +Y L LC GK +EA ++ + + +Y+ LI
Sbjct: 620 LLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYF 679
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
A+ + ++M +N C+PN+V M+ + G +EA KL Q M E
Sbjct: 680 KVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQ---- 735
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
P++ T+ M+D + + + +RM G+ N + +I + G
Sbjct: 736 --------PNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNG 787
Query: 327 KVEL 330
+++
Sbjct: 788 ALDV 791
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 114/270 (42%), Gaps = 27/270 (10%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWV----LQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ D V+ LN VR+ G+F + L +LK +PS +TY +++ L + +
Sbjct: 152 DDDKEVFGQFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLD 211
Query: 110 LVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
R++ + + + + +L + GK EA++ VE V Y L
Sbjct: 212 SASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVE---TENFVPDTVFYTKLI 268
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCS 227
LC A EEA+ ++++ + P VV+Y+ L+ CL+ + + N M C
Sbjct: 269 SGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCY 328
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P+ N +V AY G A KL ++M + + +P +N ++ +
Sbjct: 329 PSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGH------------MPGYVVYNILIGSI 376
Query: 288 AAEK---RWDDLEL---VYKRMLHHGLHFN 311
+K +D L+L Y ML G+ N
Sbjct: 377 CGDKDSLNFDLLDLAEKAYSEMLAAGVVLN 406
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/263 (16%), Positives = 100/263 (38%), Gaps = 51/263 (19%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S P+ V Y + L + G E + ++ M + +P++V Y
Sbjct: 698 SCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMME---------------EKGCQPNVVTYT 742
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
A+++ + E +L+++ +G P+ TY ++++ G ++ + +++++
Sbjct: 743 AMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQT 802
Query: 122 YIPNALA----------------------------------YKVLVNTLWREGKTDEAVS 147
+ P A Y++L++ L + + + A+
Sbjct: 803 HWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALR 862
Query: 148 AVEDME--RRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+E++ +V ++ Y L LC A K E A ++ K P + S+ LI+
Sbjct: 863 LLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKG 922
Query: 206 CLDSGNIQNAAYIFNQMKNFCSP 228
+ I A + + + + P
Sbjct: 923 LFRNSKISEALLLLDFISHMVCP 945
>gi|255660986|gb|ACU25662.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 376
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 139/286 (48%), Gaps = 15/286 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + ++ PD VVYNA+LN R + + F + + + +G + S +++ ++M + G
Sbjct: 15 EIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNG 73
Query: 107 KYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K + V + ++KS ++ +++ Y +LV+ + G D+++ +E E++G V A Y
Sbjct: 74 KVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYS 133
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+ LC + A+ ++ + K KP Y LI + + ++A +F +M
Sbjct: 134 AMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTM 193
Query: 226 -CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
CSPN++T N ++ ++ +F EA L +E+ + KGL P + T++ ++
Sbjct: 194 HCSPNIITYNTLINGLCKNEMFGEAYNLVKELLD-----------KGLN-PGVITYSMLM 241
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ + + ++ ++ G + + H +I GK++L
Sbjct: 242 KGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNVLIHGLCSVGKMQL 287
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 125/292 (42%), Gaps = 29/292 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D++ Y + + G+I + S+ L + K G L D Y+A++N
Sbjct: 93 DSITYGILVHGFCKNGYIDK------SLHVLEMAEQKGGVL---------DAFAYSAMIN 137
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ + A VL + + G KP+A Y ++ ++ K+ FR++ + P
Sbjct: 138 GLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSP 197
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N + Y L+N L + EA + V+++ +G+ Y L + LC K E+AL
Sbjct: 198 NIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLW 257
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
+++ KP V + LI G +Q A ++ M + C+PNLV+ N +++ + +
Sbjct: 258 NQVTSKGFKPDVQMHNVLIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKD 317
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
G A+ ++ + + + PDI ++N L + R D
Sbjct: 318 GDIRNALVIWARILRNG------------LEPDIISYNITLKGLCSCNRISD 357
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/137 (18%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D L P ++ Y+ ++ + E A + Q+ +G KP + +++ + + G
Sbjct: 224 ELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNVLIHGLCSVG 283
Query: 107 KYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K L + + + PN +++ L+ +++G A+ + R G+ Y
Sbjct: 284 KMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343
Query: 166 DLARCLCSAGKCEEALM 182
+ LCS + +A++
Sbjct: 344 ITLKGLCSCNRISDAIL 360
>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
Length = 775
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 145/330 (43%), Gaps = 18/330 (5%)
Query: 53 LEPDIVVYNAVLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
+EPD+V+YN +++ C +Q EG + + Q+G P TY +++ G+
Sbjct: 379 VEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKG 438
Query: 112 YEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
E F ++ K + PN + LV + R G+ AV+ + +RRG+ G A Y L
Sbjct: 439 KELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINA 498
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPN 229
C+ E+A+ +++ K P + Y LI +G + +A+++ ++K P+
Sbjct: 499 FCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPD 558
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
V N ++ + F ++ +EM E GL PD T+NT++ +
Sbjct: 559 TVCYNTLIGGFCRTNKFHRVFEMLKEMEE-----------AGLK-PDTITYNTLIAYASK 606
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARADRITPPA 348
+ V ++M+ G+ + +I G E +EI ++ + A ++ P
Sbjct: 607 NGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEI-FKDMKAASKVPPNT 665
Query: 349 LIKERFCNRL-ENKDYGSAISCLVSHPVSG 377
+I N L +N SA+S + + G
Sbjct: 666 VIYNILINSLCKNNKVKSAVSLMEDMKIWG 695
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 76/357 (21%), Positives = 141/357 (39%), Gaps = 53/357 (14%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRS-------------LPKKKFKTGTLE 47
+S PD V Y ++ L + G +E +++ MRS L K G +E
Sbjct: 377 VSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIE 436
Query: 48 RWDPRLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM 99
+ + P++V N ++ R + A + +++G K A TY ++
Sbjct: 437 KGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALI 496
Query: 100 EVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ E F ++ KS P+A+ Y L++ + G+ +A + ++++ GI
Sbjct: 497 NAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIR 556
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
Y L C K + ++ + KP ++Y LI +G+++ A +
Sbjct: 557 PDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKV 616
Query: 219 FNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS-------------NHIN 264
+M K P + T ++ AY +G EAM++F++M S N +
Sbjct: 617 MRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLC 676
Query: 265 REYDKKGL-----------VIPDIYTFNTMLDACAAEKRWDDLELVYK---RMLHHG 307
+ K V P+ T+N + EK DLE V++ RM+ H
Sbjct: 677 KNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEK---DLEKVFEFMDRMIEHA 730
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 83/192 (43%), Gaps = 17/192 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV Y ++ + +F+++ M + L+PD + YN ++
Sbjct: 557 PDTVCYNTLIGGFCRTNKFHRVFEMLKEME---------------EAGLKPDTITYNTLI 601
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR--KVQKSY 122
+ + A V++++ + G P+ TYG V+ G N E F+ K
Sbjct: 602 AYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKV 661
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN + Y +L+N+L + K AVS +EDM+ G+ + Y + + L E+
Sbjct: 662 PPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFE 721
Query: 183 QMDKICKVANKP 194
MD++ + A P
Sbjct: 722 FMDRMIEHACNP 733
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 104/234 (44%), Gaps = 23/234 (9%)
Query: 106 GKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM----ERRGIVGS 160
G +N + E K V+ PN + + +L+N + + + D+A+ +E M E GI S
Sbjct: 319 GNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVS 378
Query: 161 ----AALYYDLARCLCSAGKCEEALMQMDKI-CKVANKPLVVSYTGLIQACLDSGNIQNA 215
+Y L LC G+ +E L M+++ + P ++Y LI +G I+
Sbjct: 379 VEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKG 438
Query: 216 AYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI 274
+F++M K +PN+VT N +V G A+ F E ++G+
Sbjct: 439 KELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEA-----------QRRGMK- 486
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
D T+ +++A ++ ++ ML G +A + +I S+AG++
Sbjct: 487 GDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRM 540
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 121/285 (42%), Gaps = 40/285 (14%)
Query: 17 LGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGA 76
L ++G +K+ VID M F++ D P+ + + + ++R++ E
Sbjct: 200 LLRSGRVKDALKVIDEM-------FESND----DSNCRPNDATGDILFSFLLKRERNEEL 248
Query: 77 FW------VLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAY 129
++ + + G S+ G ++ + K N ++ F ++ K + + A
Sbjct: 249 LSEDEIVNLVLKFGEHGVLISSFWMGRLITRLCRNRKTNRGWDLFTEMIKLGAVLESAAC 308
Query: 130 KVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC- 188
L+ L REG + +E M I + + L +C + ++AL ++K+
Sbjct: 309 NSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSG 368
Query: 189 -------KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--FCSPNLVTCNIMVKA 239
V+ +P VV Y LI G Q + +M++ C+P+ +T N ++
Sbjct: 369 GKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDG 428
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
+ + G E+ +LF EM +K+G V P++ T NT++
Sbjct: 429 FCKAGEIEKGKELFDEM-----------NKEG-VAPNVVTVNTLV 461
>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Glycine max]
Length = 570
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 127/294 (43%), Gaps = 31/294 (10%)
Query: 5 PDTVAYRS-IAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
P V Y I TL Q G I E ++D M + L+PD+ YN++
Sbjct: 194 PTVVTYTILIEATLLQGG-IDEAMKLLDEMLEI---------------NLQPDMFTYNSI 237
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSY 122
+ R + AF ++ + +G P TY +++ +L GK+ YE V +
Sbjct: 238 IRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGC 297
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
N + Y VL++++ R+GK +E V ++DM+++G+ Y L LC G+ + A+
Sbjct: 298 EANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIE 357
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYL 241
+D + P +V+Y ++ A IF ++ CSPN + N M A
Sbjct: 358 VLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALW 417
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
G A+ + EM + KG V PD T+N+++ + D+
Sbjct: 418 STGHKVRALGMILEMLD-----------KG-VDPDGITYNSLISCLCRDGMVDE 459
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/371 (22%), Positives = 149/371 (40%), Gaps = 44/371 (11%)
Query: 3 SYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNA 62
+PD +AY +I +A I + V+D M++ K F PDIV YN
Sbjct: 122 GHPDLIAYNAIITGFCRANRIDSAYQVLDRMKN---KGF------------SPDIVTYNI 166
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKS 121
++ + R + A QL ++ KP+ TY +++E L G + + + ++ +
Sbjct: 167 LIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEIN 226
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
P+ Y ++ + REG D A + + +G Y L R L + GK E
Sbjct: 227 LQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGY 286
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAY 240
M + + VV+Y+ LI + G ++ + MK P+ + ++ A
Sbjct: 287 ELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAAL 346
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ G + A+++ M D +PDI +NT+L +KR D+ ++
Sbjct: 347 CKEGRVDLAIEVLDVMISDG------------CVPDIVNYNTILACLCKQKRADEALSIF 394
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAG-KVELLEITWEHLARADRITPPALIKERFCNRLE 359
+++ G NA + M G KV L + E L + + P +
Sbjct: 395 EKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKG--VDPDGIT--------- 443
Query: 360 NKDYGSAISCL 370
Y S ISCL
Sbjct: 444 ---YNSLISCL 451
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 111/267 (41%), Gaps = 13/267 (4%)
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
L+ + + + + L+ L +G KP ++ + + + ++
Sbjct: 64 LSRSCKAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHGH 123
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ +AY ++ R + D A ++ M+ +G Y L LCS G + AL
Sbjct: 124 PDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEF 183
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+++ K KP VV+YT LI+A L G I A + ++M P++ T N +++
Sbjct: 184 KNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCR 243
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + A ++ ++ KG PD+ T+N +L + +W+ +
Sbjct: 244 EGYVDRAFQIISSISS-----------KGYA-PDVITYNILLRGLLNQGKWEAGYELMSD 291
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
M+ G N + +I R GKVE
Sbjct: 292 MVARGCEANVVTYSVLISSVCRDGKVE 318
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 119/310 (38%), Gaps = 65/310 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS-----------------LPKKKFKTGTLE 47
PD Y SI + + G++ F +I S+ S L + K++ G
Sbjct: 229 PDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYEL 288
Query: 48 RWD---PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG-------- 96
D E ++V Y+ ++++ R + E +L+ +K++G KP Y
Sbjct: 289 MSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCK 348
Query: 97 --------LVMEVMLACG------KYNLVY-------------EFFRKV-QKSYIPNALA 128
V++VM++ G YN + F K+ + PNA +
Sbjct: 349 EGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASS 408
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL-----MQ 183
Y + + LW G A+ + +M +G+ Y L CLC G +EA+ M+
Sbjct: 409 YNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDME 468
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
M+ KP VVSY ++ + +A + M + C PN T +++
Sbjct: 469 ME---SSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLIEGIGF 525
Query: 243 HGLFEEAMKL 252
G +A L
Sbjct: 526 GGCLNDARDL 535
>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 874
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/359 (20%), Positives = 156/359 (43%), Gaps = 44/359 (12%)
Query: 12 SIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRK 71
S+ ++ HI + F +RS +F P +P + +YN +L +C++ +
Sbjct: 80 SVVSIFAKSNHIDKAFPQFQLVRS----RF---------PENKPSVYLYNLLLESCIKER 126
Query: 72 QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIPNALAYK 130
+ E W+ + + G P T+ L++ + + E F ++ +K PN +
Sbjct: 127 RVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFG 186
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
+LV + G TD+ + + ME G++ + +Y + C G+ +++ ++K+ +
Sbjct: 187 ILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREE 246
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-----NFCSPNLVTCNIMVKAYLEHGL 245
P +V++ I A G + +A+ IF+ M+ PN +T N+M+K + + GL
Sbjct: 247 GLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGL 306
Query: 246 FEEAMKLFQEMAEDSN------------------------HINREYDKKGLVIPDIYTFN 281
E+A LF+ + E+ + + ++ KG + P IY++N
Sbjct: 307 LEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKG-IGPSIYSYN 365
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
++D D + + M +G+ +A + ++ GKV+ + + + R
Sbjct: 366 ILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMR 424
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/339 (20%), Positives = 144/339 (42%), Gaps = 28/339 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + S L + G V+D+ R F L+ + P+ + YN +L
Sbjct: 250 PDIVTFNSRISALCKEGK------VLDASRI-----FSDMELDEYLGLPRPNSITYNLML 298
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ E A + + +++ S +Y + ++ ++ GK+ +++ K
Sbjct: 299 KGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIG 358
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ +Y +L++ L + G +A + V M+R G+ A Y L CS GK + A
Sbjct: 359 PSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSL 418
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ ++ + P + L+ + G I A + +M + + VTCNI+V
Sbjct: 419 LQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCG 478
Query: 243 HGLFEEAMKLFQEM----AEDSNHINREYDKKGLV---------IPDIYTFNTMLDACAA 289
G ++A+++ + M + ++ Y GLV +PD+ T++T+L+
Sbjct: 479 SGELDKAIEIVKGMRVHGSAALGNLGNSY--IGLVDDSLIENNCLPDLITYSTLLNGLCK 536
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
R+ + + ++ M+ L ++ + I + GK+
Sbjct: 537 AGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKI 575
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 13/221 (5%)
Query: 90 PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSA 148
P TY ++ + G++ F ++ + P+++AY + ++ ++GK A
Sbjct: 522 PDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRV 581
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
++DME++G S Y L L + E MD++ + P + +Y IQ +
Sbjct: 582 LKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCE 641
Query: 209 SGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
+++A + ++M KN +PN+ + +++A+ + F+ A ++F+
Sbjct: 642 GEKVEDATNLLDEMMQKNI-APNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQ---- 696
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
K+GL FN +L A K + LE V R G
Sbjct: 697 --KEGLY---SLMFNELLAAGQLLKATELLEAVLDRGFELG 732
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/258 (19%), Positives = 104/258 (40%), Gaps = 9/258 (3%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMR---SLPKKKFKTGTLERWDPRL-----EPDI 57
DTV I L +G + + +++ MR S + D L PD+
Sbjct: 465 DTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDL 524
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
+ Y+ +LN + ++ A + ++ + +P + Y + + GK + + +
Sbjct: 525 ITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKD 584
Query: 118 VQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
++K +L Y L+ L + + E +++M+ +GI + Y + LC K
Sbjct: 585 MEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEK 644
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIM 236
E+A +D++ + P V S+ LI+A + A +F + C ++M
Sbjct: 645 VEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQKEGLYSLM 704
Query: 237 VKAYLEHGLFEEAMKLFQ 254
L G +A +L +
Sbjct: 705 FNELLAAGQLLKATELLE 722
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 15/172 (8%)
Query: 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACV 68
Y S+ + LG I E+ ++D M+ + + P+I YN +
Sbjct: 596 TYNSLILGLGIKNQIFEIHGLMDEMK---------------EKGISPNICTYNTAIQYLC 640
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALA 128
++ E A +L ++ Q+ P+ ++ ++E +++ E F
Sbjct: 641 EGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQKEGL 700
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
Y ++ N L G+ +A +E + RG LY DL LC + E A
Sbjct: 701 YSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVA 752
>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
Length = 426
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/362 (21%), Positives = 145/362 (40%), Gaps = 74/362 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V S+ Q + FD ID + + + F+ PD+V+YN ++
Sbjct: 78 PDVVTVSSLINGFCQGNRV---FDAIDLVSKMEEMGFR------------PDVVIYNTII 122
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + A + ++++ G + A TY ++ + G+++ R V + +
Sbjct: 123 DGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIV 182
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + +++ +EGK EA+ E+M RR + Y L LC G+ +EA
Sbjct: 183 PNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQM 242
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+D + P VV+Y LI S + +F +M + + +T N +++ Y +
Sbjct: 243 LDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQ 302
Query: 243 HG-------LF-------------------------EEAMKLFQEM-------------- 256
G +F E+A+ LF+ M
Sbjct: 303 AGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNI 362
Query: 257 ----------AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306
ED+ + R KGL PD+ ++ TM+ +++WD +L+Y++M
Sbjct: 363 VIHGMCKIGNVEDAWDLFRSLSCKGLK-PDVVSYTTMISGFCRKRQWDKSDLLYRKMQED 421
Query: 307 GL 308
GL
Sbjct: 422 GL 423
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 124/277 (44%), Gaps = 20/277 (7%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D+ YN V+N R ++ A V+ ++ + G +P T V ++ + N V++
Sbjct: 44 DLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVT---VSSLINGFCQGNRVFDAI 100
Query: 116 RKVQK----SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
V K + P+ + Y +++ + G ++AV + MER G+ A Y L L
Sbjct: 101 DLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGL 160
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNL 230
C +G+ +A M + P V+++T +I + G A ++ +M C P++
Sbjct: 161 CCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDV 220
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T N ++ HG +EA ++ M KG +PD+ T+NT+++
Sbjct: 221 FTYNSLINGLCMHGRVDEAKQMLDLMV-----------TKG-CLPDVVTYNTLINGFCKS 268
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
KR D+ +++ M GL + + +I +AG+
Sbjct: 269 KRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGR 305
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 14/252 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPD+V ++++N + + A ++ ++++ G +P Y +++ G N E
Sbjct: 77 EPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVE 136
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F ++++ + +A+ Y LV L G+ +A + DM R IV + + +
Sbjct: 137 LFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFV 196
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
GK EA+ +++ + P V +Y LI G + A + + M C P++V
Sbjct: 197 KEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVV 256
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ + + +E KLF+EMA+ +GLV D T+NT++
Sbjct: 257 TYNTLINGFCKSKRVDEGTKLFREMAQ-----------RGLV-GDTITYNTIIQGYFQAG 304
Query: 292 RWDDLELVYKRM 303
R D + ++ RM
Sbjct: 305 RPDAAQEIFSRM 316
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 112/255 (43%), Gaps = 14/255 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P IV ++ VL+ + K ++ + ++ G +Y +V+ + C ++ +
Sbjct: 8 PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 67
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y P+ + L+N + + +A+ V ME G +Y + C
Sbjct: 68 VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK 127
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G +A+ D++ + + V+Y L+ SG +AA + M PN++T
Sbjct: 128 IGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVIT 187
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
++ +++ G F EAMKL++EM + V PD++T+N++++ R
Sbjct: 188 FTAVIDVFVKEGKFSEAMKLYEEMT------------RRCVDPDVFTYNSLINGLCMHGR 235
Query: 293 WDDLELVYKRMLHHG 307
D+ + + M+ G
Sbjct: 236 VDEAKQMLDLMVTKG 250
>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Cucumis sativus]
Length = 749
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 117/264 (44%), Gaps = 14/264 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + + P++ YN ++ E + ++++ G P+ TY +++
Sbjct: 193 EMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLR 252
Query: 107 KYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K ++ R + K PN ++Y V++N L REG+ E +E+M +R V +
Sbjct: 253 KIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFN 312
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN- 224
L C+ G +AL+ ++ K P VV+YT LI + +GN+ A +QM++
Sbjct: 313 TLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDR 372
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
PN T ++ + + G ++A ++ +EM E+ P I T+N ++
Sbjct: 373 GLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENG------------FTPTIITYNALI 420
Query: 285 DACAAEKRWDDLELVYKRMLHHGL 308
+ R +D + + M+ G
Sbjct: 421 NGHCILGRMEDASGLLQEMIERGF 444
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/343 (19%), Positives = 151/343 (44%), Gaps = 46/343 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ ++ +AG++ + +D MR D L P+ Y ++
Sbjct: 341 PNVVTYTTLINSMCKAGNLNRAMEFLDQMR---------------DRGLHPNGRTYTTLI 385
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ ++ + A+ +++++ + G P+ TY ++ G+ ++ +++ +I
Sbjct: 386 DGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFI 445
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++Y +++ R + ++A +M +GI A Y L + LC + E
Sbjct: 446 PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDL 505
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
++ + P V+YT LI A G++ A + ++M K F SP++VT N+++ +
Sbjct: 506 FQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGF-SPDIVTYNVLINGFN 564
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC-------------- 287
+ +EA +L ++ + + +P+ T+NT++D C
Sbjct: 565 KQSRTKEAKRLLLKLLYEES------------VPNEITYNTLIDNCNNLEFKSALALMKG 612
Query: 288 -AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ ++ + V + ML G N + + +I S+ G +E
Sbjct: 613 FCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIE 655
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/364 (20%), Positives = 150/364 (41%), Gaps = 37/364 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ ++Y + L + G +KE ++++ M R PD V +N ++
Sbjct: 271 PNLISYNVVINGLCREGQMKETSEILEEMSK---------------RRYVPDRVTFNTLI 315
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
N + A + ++ + G P+ TY ++ M G N EF +++ +
Sbjct: 316 NGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLH 375
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y L++ ++G +A +++M G + Y L C G+ E+A
Sbjct: 376 PNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGL 435
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ ++ + P VVSY+ +I + ++ A + +M SP++ T + +++ +
Sbjct: 436 LQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCK 495
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
E LFQEM + PD T+ ++++A E D ++
Sbjct: 496 QRRLGEVCDLFQEMLSLG------------LPPDEVTYTSLINAYCIEGDLDKALRLHDE 543
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE-----LLEITWEHLARADRITPPALIKERFCNR 357
M+ G + + +I ++ + + LL++ +E + + IT LI CN
Sbjct: 544 MIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEE-SVPNEITYNTLIDN--CNN 600
Query: 358 LENK 361
LE K
Sbjct: 601 LEFK 604
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 113/272 (41%), Gaps = 17/272 (6%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE--FFR 116
V++ V+ +C R A ++ K G P +Y +++ ++ + + E F
Sbjct: 134 VFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKE 193
Query: 117 KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
V+ PN Y +L+ G + + +MER G + + Y + C K
Sbjct: 194 MVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRK 253
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNI 235
EA + + P ++SY +I G ++ + I +M K P+ VT N
Sbjct: 254 IGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNT 313
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWD 294
++ Y G F +A+ L EM K GL P++ T+ T++++ C A
Sbjct: 314 LINGYCNVGNFHQALVLHAEMV-----------KNGLS-PNVVTYTTLINSMCKAGNLNR 361
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+E + +M GLH N + + +I S+ G
Sbjct: 362 AMEFL-DQMRDRGLHPNGRTYTTLIDGFSQQG 392
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 21/170 (12%)
Query: 194 PLVVSYTGLIQACLDSG-NIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMK 251
P V+SY ++ A + + +++ A IF +M ++ SPN+ T NI+++ + G E +
Sbjct: 165 PGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLF 224
Query: 252 LFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKRMLHHGLHF 310
F EM + +P++ T+NT++DA C K + +L+ + M GL+
Sbjct: 225 FFGEMERNG------------CLPNVVTYNTIIDAYCKLRKIGEAFKLL-RLMALKGLNP 271
Query: 311 NAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPALIKERFCN 356
N + +I R G++ E+LE + DR+T LI +CN
Sbjct: 272 NLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLIN-GYCN 320
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 89/237 (37%), Gaps = 39/237 (16%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSL--PKKKFKTGTL---------------- 46
PD Y S+ L + + E+ D+ M SL P + +L
Sbjct: 481 PDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRL 540
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME---- 100
E PDIV YN ++N ++ + + A +L +L + P+ TY +++
Sbjct: 541 HDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNN 600
Query: 101 --------VMLACGKYNLVYEFFR----KVQKSYIPNALAYKVLVNTLWREGKTDEAVSA 148
+M L+ E R +QK Y N Y V+++ + G ++A +
Sbjct: 601 LEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNL 660
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMD---KICKVANKPLVVSYTGL 202
++M G + LA+ L GK E +D K C++ L G+
Sbjct: 661 YKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGI 717
>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
Length = 465
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 129/302 (42%), Gaps = 35/302 (11%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V Y ++ L +AG ++E +++ M++ PD+V Y++ +
Sbjct: 186 DVVTYNTLMDGLCKAGRLQEAEQLLERMKA---------------SGCAPDVVAYSSFVY 230
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS--YI 123
+ + A VL+Q++ P+ TY +++ + GK + E ++ S
Sbjct: 231 GLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCG 290
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + Y +V+ L + G+T EA S +E M R G Y L LC AGK EEA+
Sbjct: 291 LNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEA 350
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM------KNFCSPNLVTCNIMV 237
+ ++ KP V+Y L+ G + A + +M + C P++ T N ++
Sbjct: 351 VREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALI 410
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ G ++A+K FQ M PD +++T+++ A R E
Sbjct: 411 GGLCKAGRIDDALKFFQRMRSQGCD------------PDGVSYSTIVEGLARSGRALQAE 458
Query: 298 LV 299
++
Sbjct: 459 MI 460
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 123/278 (44%), Gaps = 10/278 (3%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++ D+V YN +++ + + + A +L+++K G P Y + + GK +
Sbjct: 183 VKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAH 242
Query: 113 EFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG-SAALYYDLARC 170
+ +++ S + PN + Y +++ L + GK D A+ +E M G + Y +
Sbjct: 243 QVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDG 302
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
LC G+ +EA M+ + + +P VV+Y+ L+ +G I+ A +M C PN
Sbjct: 303 LCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPN 362
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
VT +V G EA ++ +EM+ + P + T+N ++
Sbjct: 363 AVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGH-------HCPPSVSTYNALIGGLCK 415
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
R DD ++RM G + + ++ +R+G+
Sbjct: 416 AGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGR 453
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 130/299 (43%), Gaps = 26/299 (8%)
Query: 46 LERW-------------DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSA 92
LERW R PD+V Y+ +L+ + + E + +L+++ +G +P A
Sbjct: 58 LERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDA 117
Query: 93 TTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVED 151
Y V+ + + E + ++ P + + L++ RE + A S ++
Sbjct: 118 LMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQK 177
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
M G+ Y L LC AG+ +EA ++++ P VV+Y+ + SG
Sbjct: 178 MAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGK 237
Query: 212 IQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270
+ +A + QM++ PN+VT N ++ + G + A+++ ++MA D
Sbjct: 238 VLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASS--------DGC 289
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
GL ++ ++T++D R + V + M G + + ++ +AGK+E
Sbjct: 290 GL---NVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIE 345
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 139/307 (45%), Gaps = 21/307 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK--PSATTYGLVMEVMLACGKYNL 110
++P++V YN +L + ++W A +++ + +G + P TY ++ GK
Sbjct: 41 IQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEE 100
Query: 111 VYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
E ++V + P+AL Y +V +L + + EA+ +E+M R G + + L
Sbjct: 101 SRELLKEVISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLIS 160
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSP 228
C E A + K+ K VV+Y L+ +G +Q A + +MK + C+P
Sbjct: 161 GCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAP 220
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-C 287
++V + V + G +A ++ ++M DS+H P++ T+NT+LD C
Sbjct: 221 DVVAYSSFVYGLCKSGKVLDAHQVLEQM-RDSHH-----------DPNVVTYNTILDGLC 268
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA----DR 343
+ K LE++ + G N + ++ + G+ + E +ARA D
Sbjct: 269 KSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDV 328
Query: 344 ITPPALI 350
+T +L+
Sbjct: 329 VTYSSLV 335
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 101/261 (38%), Gaps = 57/261 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD VAY S L ++G + + V++ MR D +P++V YN +L
Sbjct: 220 PDVVAYSSFVYGLCKSGKVLDAHQVLEQMR---------------DSHHDPNVVTYNTIL 264
Query: 65 NACVRRKQWEGAFWVLQQL-KQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
+ + + + A +++Q+ G + Y V++ + G+ + ++
Sbjct: 265 DGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGC 324
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS--------- 173
P+ + Y LVN L + GK +EAV AV +M G +A Y L LCS
Sbjct: 325 RPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAER 384
Query: 174 -------------------------------AGKCEEALMQMDKICKVANKPLVVSYTGL 202
AG+ ++AL ++ P VSY+ +
Sbjct: 385 MVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTI 444
Query: 203 IQACLDSGNIQNAAYIFNQMK 223
++ SG A I ++++
Sbjct: 445 VEGLARSGRALQAEMILSEVR 465
>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/329 (23%), Positives = 147/329 (44%), Gaps = 33/329 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V+Y +I G+I+ ++D+MR +EPD Y +++
Sbjct: 260 PNVVSYNTIIHGYSSRGNIEGARRILDAMRV---------------KGIEPDSYTYGSLI 304
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK---VQKS 121
+ + + E A + ++ + G P+A TY +++ C K +L F + V+K
Sbjct: 305 SGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGY--CNKGDLERAFSYRDEMVKKG 362
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+P+ Y +LV+ L+ EG+ EA +++M ++GI+ A Y L G ++A
Sbjct: 363 IMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAF 422
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAY 240
+++ +P V+YT LI ++ A +F + + SP+++ N MV +
Sbjct: 423 DLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGH 482
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+G E A L +EM D+K V PD TFNT++ E + ++ ++
Sbjct: 483 CANGNVERAFMLLKEM-----------DRKS-VPPDEVTFNTLMQGRCREGKVEEARMLL 530
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVE 329
M G+ + + +I R G ++
Sbjct: 531 DEMKRRGIKPDHISYNTLISGYGRRGDIK 559
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 116/255 (45%), Gaps = 17/255 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y + L G + E D+I MR K G + PD + YN ++
Sbjct: 365 PSVSTYNLLVHALFMEGRMGEADDMIKEMR-------KKGII--------PDAITYNILI 409
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N R + AF + ++ +G +P+ TY ++ V+ + + F K+ +
Sbjct: 410 NGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVS 469
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + +V+ G + A +++M+R+ + + L + C GK EEA M
Sbjct: 470 PDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARML 529
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLE 242
+D++ + KP +SY LI G+I++A + ++M + +P L+T N ++K +
Sbjct: 530 LDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCK 589
Query: 243 HGLFEEAMKLFQEMA 257
+ + A +L +EM
Sbjct: 590 NQEGDLAEELLKEMV 604
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 119/274 (43%), Gaps = 14/274 (5%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
+V++ ++ C ++ + AF +K++G P T ++ + L + + + + +
Sbjct: 158 IVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAE 217
Query: 118 VQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
+ + I + + + ++VN L +EGK +A + ME G + Y + S G
Sbjct: 218 MFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGN 277
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNI 235
E A +D + +P +Y LI G ++ A+ +F++M PN VT N
Sbjct: 278 IEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNT 337
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
++ Y G E A EM KKG ++P + T+N ++ A E R +
Sbjct: 338 LIDGYCNKGDLERAFSYRDEMV-----------KKG-IMPSVSTYNLLVHALFMEGRMGE 385
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + K M G+ +A + +I SR G +
Sbjct: 386 ADDMIKEMRKKGIIPDAITYNILINGYSRCGNAK 419
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 85/202 (42%), Gaps = 16/202 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y S+ L + +KE D+ + + D + PD++++NA++
Sbjct: 435 PTHVTYTSLIYVLSRRNRMKEADDLFEKI---------------LDQGVSPDVIMFNAMV 479
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ E AF +L+++ ++ P T+ +M+ GK ++++ I
Sbjct: 480 DGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIK 539
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++Y L++ R G +A ++M G + Y L +CLC + + A
Sbjct: 540 PDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEEL 599
Query: 184 MDKICKVANKPLVVSYTGLIQA 205
+ ++ P +Y LI+
Sbjct: 600 LKEMVNKGISPDDSTYLSLIEG 621
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD ++Y ++ G+ G IK+ F V D M S+ P ++ YNA++
Sbjct: 540 PDHISYNTLISGYGRRGDIKDAFRVRDEMLSIG---------------FNPTLLTYNALI 584
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
+ ++ + A +L+++ +G P +TY ++E M
Sbjct: 585 KCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 622
>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
Length = 770
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 16/247 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+PD+ +N L A + E +L Q+K +G KP TYG +++ +
Sbjct: 528 FKPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKAN 587
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++ ++ K+ + PNA+ Y L+ R G +A+ ++ M+ GI + Y L +
Sbjct: 588 KYLIELIKNGLRPNAVIYNALIGGYGRNGSISDAIGVLDTMKHNGIQPTPITYNSLMYWM 647
Query: 172 CSAGKCEEALMQMDKICKVANKPL-VVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
C AG EEA ++ C + N L V+ YT +IQ G I A F +M PN
Sbjct: 648 CHAGLVEEA-KEIFAQCILKNIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHYRDIRPN 706
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+T ++ AY + G EEA KLF EM ++PD ++NT++ C
Sbjct: 707 KMTYTTLMYAYCKCGNKEEAFKLFDEMVSSG------------IVPDTVSYNTLISGCCE 754
Query: 290 EKRWDDL 296
D +
Sbjct: 755 VDSLDKI 761
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 131/304 (43%), Gaps = 32/304 (10%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+ Y ++ A R + + AF +L +L++ G +P+ TY ++M+ + G+ ++
Sbjct: 214 PDVYTYTVMIKALCRAGEIDAAFVMLAELERSGIQPTVVTYNVLMDALCRSGRVEEAFQL 273
Query: 115 -FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
R V+ P+ + + +L+N L R + E + +++ME GI + +Y L C
Sbjct: 274 KGRMVEGRLRPSIVTFGILINGLARGQRFGEVDAVLQEMEGFGITPNEVIYNQLIGWHCR 333
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTC 233
G C EAL D++ K VV+Y + +A G +++A I ++M + V C
Sbjct: 334 EGHCSEALRLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEQILDEM--LLAGMTVHC 391
Query: 234 NIMVKAYLEH----GLFEEAMKLFQEMA------------------------EDSNHINR 265
++ H G + ++L +EM E++ I
Sbjct: 392 SLFNSVVAWHLRGTGRLDVVLRLIREMVARFLKPNDAVMTACIQELCKRGKHEEAAEIWF 451
Query: 266 EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRA 325
KGL + +I T N ++ + V K M+ G+ F+ + MI +A
Sbjct: 452 LVLGKGLGV-NIATSNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRITYNIMIQFCCKA 510
Query: 326 GKVE 329
K+E
Sbjct: 511 SKME 514
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/366 (21%), Positives = 141/366 (38%), Gaps = 78/366 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + L +AG I F ++ LER ++P +V YN ++
Sbjct: 214 PDVYTYTVMIKALCRAGEIDAAFVML-------------AELERSG--IQPTVVTYNVLM 258
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+A R + E AF + ++ + +PS T+G+++ + ++ V ++++ I
Sbjct: 259 DALCRSGRVEEAFQLKGRMVEGRLRPSIVTFGILINGLARGQRFGEVDAVLQEMEGFGIT 318
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L+ REG EA+ ++M +GI + Y +A+ LC G+ E A
Sbjct: 319 PNEVIYNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEQI 378
Query: 184 MDKI--------CKVAN----------------------------KPLVVSYTGLIQACL 207
+D++ C + N KP T IQ
Sbjct: 379 LDEMLLAGMTVHCSLFNSVVAWHLRGTGRLDVVLRLIREMVARFLKPNDAVMTACIQELC 438
Query: 208 DSGNIQNAAYI-FNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR- 265
G + AA I F + N+ T N ++ + +EA K+ + M + +R
Sbjct: 439 KRGKHEEAAEIWFLVLGKGLGVNIATSNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRI 498
Query: 266 -----------------------EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ K+G PD++TFNT L A + +D+ + +
Sbjct: 499 TYNIMIQFCCKASKMEEAIQLRDDMIKRGFK-PDLFTFNTFLRAYCNLGKVEDILHLLDQ 557
Query: 303 MLHHGL 308
M GL
Sbjct: 558 MKSEGL 563
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/327 (20%), Positives = 126/327 (38%), Gaps = 30/327 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y + + GH E + D M S K+ +V YN +
Sbjct: 319 PNEVIYNQLIGWHCREGHCSEALRLFDEMVSKGIKQ---------------TVVTYNLIA 363
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML-ACGKYNLVYEFFRKVQKSYI 123
A + + E A +L ++ G + + V+ L G+ ++V R++ ++
Sbjct: 364 KALCKEGEMEHAEQILDEMLLAGMTVHCSLFNSVVAWHLRGTGRLDVVLRLIREMVARFL 423
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN + L + GK +EA + +G+ + A L LC +EA
Sbjct: 424 KPNDAVMTACIQELCKRGKHEEAAEIWFLVLGKGLGVNIATSNALIHGLCQGNNMKEATK 483
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ + + ++Y +IQ C + ++ A + + M K P+L T N ++AY
Sbjct: 484 VLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYC 543
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G E+ + L +M + + PDI T+ T++D K
Sbjct: 544 NLGKVEDILHLLDQMKSEG------------LKPDIVTYGTIIDGYCKAKDVHKANKYLI 591
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKV 328
++ +GL NA + +I R G +
Sbjct: 592 ELIKNGLRPNAVIYNALIGGYGRNGSI 618
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 18/208 (8%)
Query: 61 NAVLNACV-----RRKQWEGA-FWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
+AV+ AC+ R K E A W L K G AT+ L+ + C N+ +
Sbjct: 427 DAVMTACIQELCKRGKHEEAAEIWFLVLGKGLGVN-IATSNALIHGL---CQGNNM--KE 480
Query: 115 FRKVQKSYIPNA-----LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
KV K+ + + + Y +++ + K +EA+ +DM +RG + R
Sbjct: 481 ATKVLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLR 540
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMKNFCSP 228
C+ GK E+ L +D++ KP +V+Y +I + ++ A Y+ +KN P
Sbjct: 541 AYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNGLRP 600
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
N V N ++ Y +G +A+ + M
Sbjct: 601 NAVIYNALIGGYGRNGSISDAIGVLDTM 628
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 90/208 (43%), Gaps = 8/208 (3%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L +I NA+++ + + A VL+ + G + TY ++++ C K + +
Sbjct: 458 LGVNIATSNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRITYNIMIQF---CCKASKME 514
Query: 113 EFFR----KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
E + +++ + P+ + + GK ++ + ++ M+ G+ Y +
Sbjct: 515 EAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTII 574
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCS 227
C A +A + ++ K +P V Y LI +G+I +A + + MK N
Sbjct: 575 DGYCKAKDVHKANKYLIELIKNGLRPNAVIYNALIGGYGRNGSISDAIGVLDTMKHNGIQ 634
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
P +T N ++ GL EEA ++F +
Sbjct: 635 PTPITYNSLMYWMCHAGLVEEAKEIFAQ 662
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 17/133 (12%)
Query: 202 LIQACLDS---GNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
L++ACL+S G++ AA F ++ SP++ TCNI+V+A G + A K+F EM
Sbjct: 148 LVRACLNSPAPGSLSCAADAFLELSTRGASPSIKTCNILVEALGCGGQLDLARKVFGEM- 206
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
D N V PD+YT+ M+ A D ++ + G+ +
Sbjct: 207 RDGNA----------VAPDVYTYTVMIKALCRAGEIDAAFVMLAELERSGIQPTVVTY-N 255
Query: 318 MILDA-SRAGKVE 329
+++DA R+G+VE
Sbjct: 256 VLMDALCRSGRVE 268
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 85/246 (34%), Gaps = 66/246 (26%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS--LPKKKFKTGTL---------------- 46
PD + + G ++++ ++D M+S L GT+
Sbjct: 530 PDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKANKY 589
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY--------- 95
E L P+ V+YNA++ R A VL +K G +P+ TY
Sbjct: 590 LIELIKNGLRPNAVIYNALIGGYGRNGSISDAIGVLDTMKHNGIQPTPITYNSLMYWMCH 649
Query: 96 -GLVME------------VMLACGKYNLVYEFFRKVQK--------------SYIPNALA 128
GLV E + L Y ++ + F K+ K PN +
Sbjct: 650 AGLVEEAKEIFAQCILKNIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHYRDIRPNKMT 709
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
Y L+ + G +EA ++M GIV Y L +G CE +D +
Sbjct: 710 YTTLMYAYCKCGNKEEAFKLFDEMVSSGIVPDTVSYNTLI-----SGCCE-----VDSLD 759
Query: 189 KVANKP 194
K+ P
Sbjct: 760 KIVESP 765
>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
Length = 554
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 133/299 (44%), Gaps = 14/299 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P V+YN ++N + + EGAF Q+K + KP TY ++ + +
Sbjct: 234 LVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQ 293
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ ++Q + + P + L++ R G+ ++ + +M+ G+ + Y +
Sbjct: 294 DLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF 353
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C GK EA+ +D + P Y +I A ++ G A + +MK N SP++
Sbjct: 354 CKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSI 413
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N+++K EA ++ + SNH +IPD ++NT++ AC
Sbjct: 414 VTYNLLIKGLCNQSQISEAEEIINSL---SNH---------RLIPDAVSYNTLISACCYR 461
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPAL 349
D + +RM +G+ + + ++I AG++ +E ++ + + + + A+
Sbjct: 462 GNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAI 520
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 131/308 (42%), Gaps = 34/308 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ L +A I D++ +E D + P + +N ++
Sbjct: 271 PDHITYNALINGLCKAERITNAQDLL---------------MEMQDNGVNPTVETFNTLI 315
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+A R Q E F VL ++++ G KP+ +YG ++ GK + K +
Sbjct: 316 DAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVL 375
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PNA Y +++ G D+A VE M+ GI S Y L + LC+ + EA
Sbjct: 376 PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEI 435
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV-TCNIMVKAYLE 242
++ + P VSY LI AC GNI A + +M + + V T + ++
Sbjct: 436 INSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGG 495
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA---EKRWDDL--E 297
G E L+Q+M +++ V+P N M++A + E + +DL E
Sbjct: 496 AGRLNEMEYLYQKMMQNN------------VVPSNAIHNIMVEAYSKYGNEIKAEDLRKE 543
Query: 298 LVYKRMLH 305
++ KR H
Sbjct: 544 MLQKRNNH 551
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/326 (21%), Positives = 128/326 (39%), Gaps = 29/326 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ +Y + + +AG + +V D M ER + P+ + YN ++
Sbjct: 61 PNAFSYNVVIAGMWRAGRGGDAVEVFDEMT------------ERA---VLPNHITYNTMI 105
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ ++ E F + Q+ G KP+A TY +++ + G+ ++ + +
Sbjct: 106 DGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMV 165
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y +L + L R G + +S + G+ L LC GK A
Sbjct: 166 PDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEV 225
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+ + P V Y LI +G ++ A F QMK+ P+ +T N ++ +
Sbjct: 226 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 285
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
A L EM ++ V P + TFNT++DA + + +V
Sbjct: 286 AERITNAQDLLMEMQDNG------------VNPTVETFNTLIDAYGRTGQLEKCFIVLSE 333
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV 328
M +GL N + ++ + GK+
Sbjct: 334 MQENGLKPNVVSYGSIVNAFCKNGKI 359
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/301 (19%), Positives = 124/301 (41%), Gaps = 26/301 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNLVYE 113
PD +N + ACV A +L+++ + G P+A +Y +V+ M G+ E
Sbjct: 25 PDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVE 84
Query: 114 FFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F ++ +++ +PN + Y +++ + G + + M G+ +A Y L LC
Sbjct: 85 VFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLC 144
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLV 231
AG+ E +D++ P +Y+ L +G+ + +F + +KN +
Sbjct: 145 RAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDY 204
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKG------------ 271
TC+I++ + G A ++ Q + N + Y + G
Sbjct: 205 TCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQM 264
Query: 272 ---LVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+ PD T+N +++ +R + + + M +G++ + +I R G++
Sbjct: 265 KSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQL 324
Query: 329 E 329
E
Sbjct: 325 E 325
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/304 (21%), Positives = 124/304 (40%), Gaps = 32/304 (10%)
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+A VRR AF +L G +P + ++ +A G R++ + P
Sbjct: 8 HADVRR-----AFGIL---ASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAP 59
Query: 125 --NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
NA +Y V++ +WR G+ +AV ++M R ++ + Y + G E
Sbjct: 60 PPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFR 119
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYL 241
D++ KP ++Y L+ +G + + + ++M + P+ T +I+
Sbjct: 120 LRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLS 179
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+G + + LF +Y K G+ I D YT + +L+ + + E V +
Sbjct: 180 RNGDSKAMLSLFG-----------KYLKNGVTIGD-YTCSILLNGLCKDGKVSIAEEVLQ 227
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA----RADRITPPALIK-----E 352
+++ GL + +I + G++E T+ + + D IT ALI E
Sbjct: 228 SLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAE 287
Query: 353 RFCN 356
R N
Sbjct: 288 RITN 291
>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 130/300 (43%), Gaps = 27/300 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P++V+Y +++ C + A + ++ + G P+ TY ++M G +
Sbjct: 189 LSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGF 248
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ + +++S I PNA AY L++ +G D+A +M +GI Y L L
Sbjct: 249 QMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGL 308
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C K EA+ + K+ KV P +V+Y LI D + +A +FNQ+K+ SP L
Sbjct: 309 CRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTL 368
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDS------------------NHINRE------ 266
VT N ++ Y + A+ L +EM E NH +
Sbjct: 369 VTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSL 428
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+K GLV PD+YT++ +L + ++K + L N+ + MI + G
Sbjct: 429 MEKSGLV-PDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEG 487
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 125/306 (40%), Gaps = 29/306 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ AY + G + + F V MR +K G ++ YN ++
Sbjct: 261 PNAYAYNCLISEYCNDGMVDKAFKVFAEMR---EKGIACG------------VMTYNILI 305
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
R K++ A ++ ++ + G P+ TY +++ K + F +++ S +
Sbjct: 306 GGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLS 365
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y L+ + A+ V++ME R I S Y L E+A
Sbjct: 366 PTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEM 425
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ K P V +Y+ L+ GN++ A+ +F + PN V N M+ Y +
Sbjct: 426 HSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCK 485
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G A++L EM + ++P++ +F + + +++W + EL+ +
Sbjct: 486 EGSSYRALRLLNEMVQSG------------MVPNVASFCSTIGLLCRDEKWKEAELLLGQ 533
Query: 303 MLHHGL 308
M++ GL
Sbjct: 534 MINSGL 539
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/251 (17%), Positives = 96/251 (38%), Gaps = 48/251 (19%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
+Y+ V+NA V + A L + +G P + T+ ++ +++ ++ + F ++
Sbjct: 91 LYDTVVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAWWIFNEL 150
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ + +A ++ +++ G + + +E G+
Sbjct: 151 KSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGL--------------------- 189
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
P VV YT LI C GN+ A +F +M PN T ++++
Sbjct: 190 --------------SPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLM 235
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ + GL E ++++ M K+ ++P+ Y +N ++ + D
Sbjct: 236 NGFFKQGLQREGFQMYENM------------KRSGIVPNAYAYNCLISEYCNDGMVDKAF 283
Query: 298 LVYKRMLHHGL 308
V+ M G+
Sbjct: 284 KVFAEMREKGI 294
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 83/196 (42%), Gaps = 16/196 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y ++ + ++ D++ M ER + P V Y ++
Sbjct: 366 PTLVTYNTLIAGYSKVENLAGALDLVKEME------------ERC---IAPSKVTYTILI 410
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+A R E A + +++ G P TY +++ + G + F+ + + ++
Sbjct: 411 DAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQ 470
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN++ Y +++ +EG + A+ + +M + G+V + A + LC K +EA +
Sbjct: 471 PNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLCRDEKWKEAELL 530
Query: 184 MDKICKVANKPLVVSY 199
+ ++ KP V Y
Sbjct: 531 LGQMINSGLKPSVSLY 546
>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
Length = 545
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 149/340 (43%), Gaps = 44/340 (12%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M PD VA+ + L + + E F V++ + + G EPD V Y
Sbjct: 1 MPCSPDMVAFTVVINGLCREKRLDEAFSVLE-------RAVRAGC--------EPDYVTY 45
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQ 119
N ++ + ++ + AF +L+++ ++ P+ TY +++ +L G+ + + V+
Sbjct: 46 NVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVE 105
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K P Y V+++ L + G+ +EA DM G A +Y L + LC +GK EE
Sbjct: 106 KGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEE 165
Query: 180 ALMQMDKICKVANK--------PLVVSYTGLIQACLDSGNIQNAAYIFNQ--MKNFCSPN 229
A + K AN P VV+YT LI +G I A +F+ ++ P+
Sbjct: 166 AY----ALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPD 221
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
VT ++ + G EE + F EM NR Y+ PD T+ ++D
Sbjct: 222 AVTYTSIIDGLCKLGRVEEGCERFHEMR------NRGYE------PDAVTYAALIDGFMK 269
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA-SRAGKV 328
K VY++ML G + + +ILD +AG+V
Sbjct: 270 AKMIPKAHRVYRQMLQSGTVVSTVTY-NIILDGLCKAGRV 308
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 83/371 (22%), Positives = 149/371 (40%), Gaps = 39/371 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P TV Y ++ L +AG + E V++ M +E+ + P + Y V+
Sbjct: 75 PTTVTYTALVDGLLKAGRLDEAMAVLEQM------------VEKGN---SPTLKTYTVVI 119
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-----RKVQ 119
+ + + E A + + G +P A Y +++ + GK Y + RK
Sbjct: 120 DGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHH 179
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDME-RRGIVGSAALYYDLARCLCSAGKCE 178
+ +P+ + Y L++ L + G+ EA +D RG + A Y + LC G+ E
Sbjct: 180 ATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVE 239
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMV 237
E + ++ +P V+Y LI + + I A ++ QM ++ + VT NI++
Sbjct: 240 EGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIIL 299
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ G EA F M E + + T++ ++D +E
Sbjct: 300 DGLCKAGRVAEAYATFLAMEERG------------CVATVVTYSALMDGFCSEGNVSAAV 347
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERF--- 354
+++RML G N + +I RAGK+ +E L + R+ P F
Sbjct: 348 ELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQR-RLCPDVYTFNAFLHG 406
Query: 355 -CNRLENKDYG 364
C RL+ G
Sbjct: 407 LCQRLDTVSDG 417
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/340 (20%), Positives = 133/340 (39%), Gaps = 64/340 (18%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
++ PD V Y S+ L +AG I E V D E + PD V Y
Sbjct: 181 TAVPDVVTYTSLIDGLCKAGRILEARQVFDD--------------EAVERGFIPDAVTYT 226
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQK 120
++++ + + E +++ +G +P A TY +++ + + +R+ +Q
Sbjct: 227 SIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQS 286
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ + + Y ++++ L + G+ EA + ME RG V + Y L CS G A
Sbjct: 287 GTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAA 346
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFC------------ 226
+ ++ +P +VSY +I+ +G + A + F ++ + C
Sbjct: 347 VELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHG 406
Query: 227 -----------------------SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
SPNL + +I++ G E A+++F+EM
Sbjct: 407 LCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRG--- 463
Query: 264 NREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
V PD+ FNT++ R D+ V++ +
Sbjct: 464 ---------VAPDVVVFNTLIRWLCIAGRVDEALEVFREL 494
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 118/277 (42%), Gaps = 44/277 (15%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V + V+N R K+ + AF VL++ + G +P TY
Sbjct: 5 PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTY------------------- 45
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
V ++ L + + D+A ++ M+ + + + Y L L A
Sbjct: 46 ---------------NVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKA 90
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQMKNFCSPNLVTC 233
G+ +EA+ ++++ + N P + +YT +I +G ++ A IF + + N C P+
Sbjct: 91 GRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVY 150
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKR 292
++K + G EEA L++E +H +PD+ T+ +++D C A +
Sbjct: 151 TALIKGLCKSGKPEEAYALYKEANARKHHAT--------AVPDVVTYTSLIDGLCKAGRI 202
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ ++ + G +A + +I + G+VE
Sbjct: 203 LEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVE 239
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++ Y+ +++ R E A + +++ +G P + ++ + G+ + E
Sbjct: 431 PNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEV 490
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
FR++++ P+A +Y L++ L R + +EA M+ + G A +YDL
Sbjct: 491 FRELERRSAPDAWSYWSLLDGLSRCERMEEARLLSFHMK---LQGCAPRHYDL 540
>gi|297816088|ref|XP_002875927.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321765|gb|EFH52186.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/349 (20%), Positives = 154/349 (44%), Gaps = 47/349 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V+Y ++ ++ + G +KE R L + R EP + VYNA++
Sbjct: 213 PNAVSYTTVISSMCEVGMVKE-------GRQLAE-------------RFEPVVSVYNALI 252
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + + ++G ++ ++ ++G P+ +Y ++ + G+ L + + +++
Sbjct: 253 NGLCKERDYKGGVELMSEMVEKGISPNVISYSTLINELSNSGQIELAFSLLAQMLKRGCH 312
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERR-GIVGSAALYYDLARCLCSAGKCEEALM 182
PN LV + G T +A+ M R G+ + Y L + CS G ++A+
Sbjct: 313 PNIHTLSSLVKGCFVRGTTFDALDMWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVS 372
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ ++ P + +Y LI G+++ A YI+N+M + C PN+V MV+A
Sbjct: 373 VFLHMEEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMVEALC 432
Query: 242 EHGLFEEAMKLFQEMAED------------------------SNHINREYDKKGLVIPDI 277
H F+EA L + M+++ + + R+ +++ P+I
Sbjct: 433 RHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQYRCPPNI 492
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
T+N +LD A R ++ + + + G+ ++ + ++ + AG
Sbjct: 493 VTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSTSTYNTLLHGSCNAG 541
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 132/292 (45%), Gaps = 18/292 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
EP++ YN +L A + + +GA +L ++ +G P+A +Y V+ M G +V
Sbjct: 176 FEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPNAVSYTTVISSMCEVG---MVK 232
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
E R++ + + P Y L+N L +E V + +M +GI + Y L L
Sbjct: 233 EG-RQLAERFEPVVSVYNALINGLCKERDYKGGVELMSEMVEKGISPNVISYSTLINELS 291
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNF-CSPNL 230
++G+ E A + ++ K P + + + L++ C G +A ++NQM + F PN+
Sbjct: 292 NSGQIELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVRGTTFDALDMWNQMIRGFGLQPNV 351
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
V N +V+ + HG ++A+ +F M E P+I T+ ++++
Sbjct: 352 VAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCS------------PNIRTYGSLINGFTKR 399
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARAD 342
+ ++ +ML G N + M+ R K + E E +++ +
Sbjct: 400 GSLEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKEN 451
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 126/287 (43%), Gaps = 18/287 (6%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+P + +YN VL+ + + + + V + +K+ G +P+ TY ++++ + K + +
Sbjct: 142 DPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKK 201
Query: 114 FFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++ K PNA++Y +++++ G E E E ++Y L LC
Sbjct: 202 LLVEMSNKGCCPNAVSYTTVISSMCEVGMVKEGRQLAERFEP-----VVSVYNALINGLC 256
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
+ + M ++ + P V+SY+ LI +SG I+ A + QM K C PN+
Sbjct: 257 KERDYKGGVELMSEMVEKGISPNVISYSTLINELSNSGQIELAFSLLAQMLKRGCHPNIH 316
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T + +VK G +A+ ++ +M R + + P++ +NT++ +
Sbjct: 317 TLSSLVKGCFVRGTTFDALDMWNQMI-------RGFGLQ----PNVVAYNTLVQGFCSHG 365
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
D V+ M G N + + +I ++ G +E W +
Sbjct: 366 NIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWNKM 412
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/306 (23%), Positives = 127/306 (41%), Gaps = 32/306 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ ++Y ++ L +G I+ F ++ M K G P+I ++++
Sbjct: 278 PNVISYSTLINELSNSGQIELAFSLLAQM-------LKRGC--------HPNIHTLSSLV 322
Query: 65 NAC-VRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SY 122
C VR ++ Q ++ G +P+ Y +++ + G + F +++
Sbjct: 323 KGCFVRGTTFDALDMWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGC 382
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN Y L+N + G + AV M G + +Y + LC K +EA
Sbjct: 383 SPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHSKFKEAES 442
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--FCSPNLVTCNIMVKAY 240
++ + K P V ++ I+ D+G + A +F QM+ C PN+VT N ++
Sbjct: 443 LIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQYRCPPNIVTYNELLDGL 502
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML-DACAAEKRWDDLELV 299
+ EEA L RE +G V T+NT+L +C A L+LV
Sbjct: 503 AKANRIEEAYGL-----------TREIFMRG-VEWSTSTYNTLLHGSCNAGLPGIALQLV 550
Query: 300 YKRMLH 305
K M++
Sbjct: 551 GKMMVN 556
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/323 (21%), Positives = 138/323 (42%), Gaps = 68/323 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDV------------IDSMRSLPKKKFKTGTLER---- 48
P+ VAY ++ G+I + V I + SL K G+LE
Sbjct: 349 PNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGSLEGAVYI 408
Query: 49 WDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
W+ L P++VVY +++ A R +++ A +++ + ++ PS T+ ++ +
Sbjct: 409 WNKMLTSGCCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCD 468
Query: 105 CGKYNLVYEFFRKVQKSY--IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G+ + + FR++++ Y PN + Y L++ L + + +EA ++ RG+ S +
Sbjct: 469 AGRLDWAEKVFRQMEQQYRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSTS 528
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y L C+AG AL + K+ M
Sbjct: 529 TYNTLLHGSCNAGLPGIALQLVGKM----------------------------------M 554
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF-N 281
N SP+ +T N+++ AY + G E A+++ ++ R++ PD+ ++ N
Sbjct: 555 VNGKSPDEITMNMIILAYCKQGKAERAVQMLDLVSCG----RRKWR------PDVISYTN 604
Query: 282 TMLDACAAEKRWDDLELVYKRML 304
+ C + R D + ++++RM+
Sbjct: 605 VIWGLCRSNCREDGV-ILFERMI 626
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 101/241 (41%), Gaps = 17/241 (7%)
Query: 72 QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYK 130
Q + ++LQQ+K QG S + V+ V G E F ++++ P+ Y
Sbjct: 90 QVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYN 149
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
+++TL E + DM+R G + Y L + LC K + A + ++
Sbjct: 150 HVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNK 209
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAM 250
P VSYT +I + + G ++ Q+ P + N ++ + ++ +
Sbjct: 210 GCCPNAVSYTTVISSMCEVGMVKEG----RQLAERFEPVVSVYNALINGLCKERDYKGGV 265
Query: 251 KLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHF 310
+L EM E KG + P++ +++T+++ + + + + +ML G H
Sbjct: 266 ELMSEMVE-----------KG-ISPNVISYSTLINELSNSGQIELAFSLLAQMLKRGCHP 313
Query: 311 N 311
N
Sbjct: 314 N 314
>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
Length = 837
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 136/289 (47%), Gaps = 15/289 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D + ++ AC++ + E A ++ K++G K A Y ++++ + NL E
Sbjct: 219 DHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELL 278
Query: 116 RKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
++ ++ ++P+ + ++ +G EA+ E+M G + + L + C+
Sbjct: 279 EEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQ 338
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTC 233
G + AL +KI + P V+Y+ LI+ C +SGNI+ A+ ++ QMK N P++
Sbjct: 339 GNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNV 398
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N +++ YL+ L+EEA KLF E + + +I+T+N M+ +
Sbjct: 399 NSLLRGYLKAPLWEEASKLFDEAVDCG-------------VANIFTYNIMMSWLCKGGKM 445
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARAD 342
D+ + M++ G+ N + MIL R G +++ + + D
Sbjct: 446 DEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARD 494
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 127/309 (41%), Gaps = 16/309 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P+ V Y+ ++ C E A + Q+K G PS ++ L +
Sbjct: 356 LFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEAS 415
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ F + + N Y ++++ L + GK DEA S +++M +G+V + Y D+ C
Sbjct: 416 KLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHC 475
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLV 231
G + A + KP VV+Y+ LI G+ + A +F+QM + +P
Sbjct: 476 RKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDF 535
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ + G EA + E+ IP T+N+++D E
Sbjct: 536 TFNTIINGLCKVGQMSEARDKLKNFLEEG------------FIPSCMTYNSIVDGFIKEG 583
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARAD---RITPPA 348
D VY+ M G+ N + +I ++ +++L T + + +T +
Sbjct: 584 NIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYS 643
Query: 349 LIKERFCNR 357
+ + FC R
Sbjct: 644 ALIDGFCKR 652
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/301 (20%), Positives = 133/301 (44%), Gaps = 17/301 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+P++V Y+ +++ ++ E A + Q+ P+ T+ ++ + G+ +
Sbjct: 495 LKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEAR 554
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ + +++ +IP+ + Y +V+ +EG D A++ +M G+ + Y L
Sbjct: 555 DKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGF 614
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C + + + AL D++ + + V +Y+ LI ++++A +F ++ SPN
Sbjct: 615 CKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNR 674
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAA 289
+ N M+ + + E A+ +++M D IP D+ T+ T++D
Sbjct: 675 IVYNSMISGFRDLNNMEAALVWYKKMINDR-------------IPCDLGTYTTLIDGLLK 721
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPAL 349
E R +Y ML G+ + ++ G++E E + R + +TP L
Sbjct: 722 EGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKN-MTPSVL 780
Query: 350 I 350
I
Sbjct: 781 I 781
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 101/237 (42%), Gaps = 17/237 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y S+ ++ I D MR + LE D+ Y+A++
Sbjct: 602 PNVVTYTSLINGFCKSNRIDLALKTRDEMR---------------EKGLELDVTAYSALI 646
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ +R+ E A + +L + G P+ Y ++ +++K+ IP
Sbjct: 647 DGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIP 706
Query: 125 NALA-YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
L Y L++ L +EG+ A +M +GIV ++ L LC+ G+ E A
Sbjct: 707 CDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKI 766
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKA 239
++++ + P V+ Y LI GN++ A + ++M + P+ VT +I++
Sbjct: 767 LEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILING 823
>gi|255660974|gb|ACU25656.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 372
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 138/283 (48%), Gaps = 15/283 (5%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ ++ PD VVYNA+LN R + + F + + + +G + S +++ ++M + GK +
Sbjct: 17 ESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNGKVD 75
Query: 110 LVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
V + +++S ++ +++ Y +LV+ + G D+++ +E E++G V A Y +
Sbjct: 76 EVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMI 135
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CS 227
LC + A+ ++ + K KP V Y LI + + ++A +F +M CS
Sbjct: 136 NGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCS 195
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P ++T N ++ ++ +F EA L +E+ + KGL P + T++ ++
Sbjct: 196 PTIITYNTLINGLCKNKMFGEAYNLVKELLD-----------KGLD-PGVITYSMLMKGL 243
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ R + ++ ++ G + + H +I GK++L
Sbjct: 244 CLDHRVERALXLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQL 286
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 123/292 (42%), Gaps = 29/292 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D++ Y + + G+I + S+ L + K G L D Y+A++N
Sbjct: 92 DSITYGILVHGFCKNGYIDK------SLHVLEMAEQKGGVL---------DAFAYSAMIN 136
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ + A VL + + G KP+ Y ++ ++ K+ FR++ + P
Sbjct: 137 GLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSP 196
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ Y L+N L + EA + V+++ +G+ Y L + LC + E AL
Sbjct: 197 TIITYNTLINGLCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHRVERALXLW 256
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
+++ KP V + LI G +Q A ++ M + C+PNLV+ N +++ + +
Sbjct: 257 NQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKD 316
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
G A+ ++ + + + PDI ++N L+ + R D
Sbjct: 317 GDIRNALVIWARILRNG------------LEPDIISYNITLEGLCSCNRISD 356
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/137 (18%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D L+P ++ Y+ ++ + E A + Q+ +G KP + +++ + + G
Sbjct: 223 ELLDKGLDPGVITYSMLMKGLCLDHRVERALXLWNQVTSKGFKPDVQMHNILIHGLCSVG 282
Query: 107 KYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K L + + + PN +++ L+ +++G A+ + R G+ Y
Sbjct: 283 KMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 342
Query: 166 DLARCLCSAGKCEEALM 182
LCS + +A++
Sbjct: 343 ITLEGLCSCNRISDAIL 359
>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 145/331 (43%), Gaps = 29/331 (8%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M PD + Y +I L + G ++ M + +P++VVY
Sbjct: 76 MGYEPDVITYSTIINGLCKMGSTTMAIQLLKKME---------------EKGCKPNVVVY 120
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQ 119
+ ++++ + K A L ++ +G P+ TY ++ G+ N F++ V+
Sbjct: 121 STIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVE 180
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
++ +P+ + + +LV+ L +EG EA E M +G+ + Y L CS + +E
Sbjct: 181 RNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDE 240
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVK 238
A + + + P V SY LI+ SG I A + +M + +P+ VT + ++K
Sbjct: 241 AQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMK 300
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ + G ++A KL +EM R Y ++PD+ T++ +LD + D+
Sbjct: 301 GFCQDGRPQDAQKLLEEM--------RSYG----LLPDLMTYSIVLDGLCKQGHLDEAFE 348
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ K M + N + +I GK+E
Sbjct: 349 LLKAMQESKIEPNIFIYTILIQGMCNFGKLE 379
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 144/312 (46%), Gaps = 23/312 (7%)
Query: 53 LEPDIVVYNAVLNACVR--RKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-N 109
+ PD+ ++N + AF VL + + G +P+ T+ ++ + + K +
Sbjct: 6 IRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIID 65
Query: 110 LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
V F V+ Y P+ + Y ++N L + G T A+ ++ ME +G + +Y +
Sbjct: 66 AVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIID 125
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSP 228
LC EA+ + ++ P VV+Y+ ++ + G A +F QM + P
Sbjct: 126 SLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMP 185
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
+ VT NI+V + G+ EA +F+ M E KG V P++ T+N ++D
Sbjct: 186 DTVTFNILVDGLSKEGMILEAQCVFETMIE-----------KG-VEPNVNTYNALMDGYC 233
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE-----LLEITWEHLARADR 343
++ + D+ + ++ M+ G + + + +I ++G+++ L E++ + L D
Sbjct: 234 SQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALT-PDT 292
Query: 344 ITPPALIKERFC 355
+T L+K FC
Sbjct: 293 VTYSTLMK-GFC 303
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 118/255 (46%), Gaps = 17/255 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV + + L + G I E V ++M + +EP++ YNA++
Sbjct: 185 PDTVTFNILVDGLSKEGMILEAQCVFETM---------------IEKGVEPNVNTYNALM 229
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + Q + A + + ++G PS +Y ++++ G+ + ++ K+
Sbjct: 230 DGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALT 289
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L+ ++G+ +A +E+M G++ Y + LC G +EA
Sbjct: 290 PDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFEL 349
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQMKNFCSPNLVTCNIMVKAYLE 242
+ + + +P + YT LIQ + G ++ A +F N P++VT +M+ L+
Sbjct: 350 LKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLK 409
Query: 243 HGLFEEAMKLFQEMA 257
GL EA +LF++MA
Sbjct: 410 GGLSNEACELFRDMA 424
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 19/172 (11%)
Query: 1 MSSY---PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDI 57
M SY PD + Y + L + GH+ E F+++ +M+ + ++EP+I
Sbjct: 318 MRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQ---------------ESKIEPNI 362
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
+Y ++ + E A + L +G +P TY +++ +L G N E FR
Sbjct: 363 FIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRD 422
Query: 118 VQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
+ +PN+ Y V++ R G T A +E+M RG ++ + L+
Sbjct: 423 MAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQMLS 474
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 88/207 (42%), Gaps = 37/207 (17%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD V Y+ ++ + + + A +L++++ G P TY +V++ + G + +
Sbjct: 288 LTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAF 347
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E + +Q+S I PN Y +L+ + GK + A ++ +GI
Sbjct: 348 ELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGI-------------- 393
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
+P VV+YT +I L G A +F M + C PN
Sbjct: 394 ---------------------QPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNS 432
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMA 257
T N++++ +L +G A +L +EM
Sbjct: 433 CTYNVIIQGFLRNGDTSNAGRLIEEMV 459
>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 557
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 137/309 (44%), Gaps = 29/309 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + + K+ ++D MR+ PDI+ YN V+
Sbjct: 189 PDVVTYTILLEATCKRSGYKQAMKLLDEMRA---------------KGCAPDIITYNVVV 233
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N + + + A L+ L G +P+ +Y +V++ + ++ + ++ QK Y
Sbjct: 234 NGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYP 293
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + +L++ L R G + A+ ++ + + G ++ Y + C K + A+
Sbjct: 294 PNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAF 353
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
++ + P +VSY L+ A G + A + +Q+K+ C+P L++ N ++ +
Sbjct: 354 VELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTK 413
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +EA++L EM KGL PDI T++T+ E R ++ + +
Sbjct: 414 AGKTKEALELLNEMV-----------TKGLQ-PDIITYSTISSGLCREDRIEEAIRAFCK 461
Query: 303 MLHHGLHFN 311
+ G+ N
Sbjct: 462 VQDMGIRPN 470
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 120/271 (44%), Gaps = 23/271 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V + + L + G ++ +V+D +PK P+ + YN +L
Sbjct: 294 PNVVTFNMLISFLCRRGLVEPAMEVLDQ---IPKYGCT------------PNSLSYNPIL 338
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+A ++K+ + A ++ + +G P +Y ++ + G+ + E +++ K
Sbjct: 339 HAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCT 398
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P ++Y +++ L + GKT EA+ + +M +G+ Y ++ LC + EEA+
Sbjct: 399 PVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRA 458
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
K+ + +P V Y ++ NA +F M N C PN T I+++
Sbjct: 459 FCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTY 518
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLV 273
GL +EA +L E+ +R KGL+
Sbjct: 519 EGLVKEARELLGELC------SRGVVSKGLI 543
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/351 (18%), Positives = 152/351 (43%), Gaps = 38/351 (10%)
Query: 1 MSSYPDTVAYRSIA----VTLGQAGHIKELFDVIDSMRSLPK-----------KKF---- 41
+++ P+ V +R+++ L + G ++E +++SM L KK
Sbjct: 49 VAASPNAVPHRAVSNDRLRGLVRRGDLEEALRLVESMSGLEPSAAPGPCAALIKKLCASG 108
Query: 42 KTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
+T R EPD++ YNA++ Q + A ++ + + P + TY ++
Sbjct: 109 RTAEARRVLAACEPDVMAYNAMVAGYCVTGQLDAARRLVADMPME---PDSYTYNTLIRG 165
Query: 102 MLACGKY-NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ G+ N + +++ +P+ + Y +L+ + +A+ +++M +G
Sbjct: 166 LCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPD 225
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y + +C G+ ++A+ + + +P VSY +++ + ++A +
Sbjct: 226 IITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMA 285
Query: 221 QM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
+M K + PN+VT N+++ GL E AM++ ++ K G P+
Sbjct: 286 EMSQKGY-PPNVVTFNMLISFLCRRGLVEPAMEVLDQIP-----------KYGCT-PNSL 332
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++N +L A +K+ D + M+ G + + + ++ R G+V+
Sbjct: 333 SYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVD 383
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 25/178 (14%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFD-------------------VIDSMRSLPKKKFKTG 44
YPD V+Y ++ L + G + + VID + K K
Sbjct: 363 YPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALE 422
Query: 45 TL-ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
L E L+PDI+ Y+ + + R + E A +++ G +P+ Y ++ +
Sbjct: 423 LLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAIL--LG 480
Query: 104 ACGK---YNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
C + +N + F + +PN Y +L+ L EG EA + ++ RG+V
Sbjct: 481 LCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGELCSRGVV 538
>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
Length = 603
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 143/337 (42%), Gaps = 48/337 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTLERWDPRLEPDIVVYNA 62
P TVAY S+ L A + ++ M R P P V YN
Sbjct: 43 PSTVAYTSLIHGLCMANSFDDARELFADMNRRGCP-----------------PSPVTYNV 85
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-S 121
+++A +R E A +++++ + G P TY VM+ + G+ F ++++
Sbjct: 86 IIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLG 145
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
PN ++ ++ L ++ K D+A +ME R I + Y L L AGK EA
Sbjct: 146 CTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAY 205
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAY 240
++ P V+Y +I + + A +F M++ C P+ T NI++ A+
Sbjct: 206 KLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAH 265
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD----L 296
+ G +EA +L + M +D + +PD+ T++T++ + R DD L
Sbjct: 266 CKRGKMDEAFRLLKRMTDDGH------------VPDVVTYSTLISGLCSIARVDDARHLL 313
Query: 297 ELVYKR----------MLHHGLHFNAK-RHLRMILDA 322
E + KR L HGL + + R +LDA
Sbjct: 314 EDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDA 350
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 143/327 (43%), Gaps = 31/327 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ L ++G ++E + + M L P+ +N ++
Sbjct: 113 PDVVTYNTVMDGLCKSGRVEEALLLFNEMERLG---------------CTPNRRSHNTII 157
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
++ + + A V +++ + P + +YG++++ + GK N Y+ FR++ S I
Sbjct: 158 LGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGIT 217
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+A+ Y V+++ + DEA+ + M +G S + L C GK +EA
Sbjct: 218 PSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRL 277
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ ++ + P VV+Y+ LI + +A ++ M K C P +VT N ++ +
Sbjct: 278 LKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCK 337
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYK 301
G +EA ++ M PD+ T+NT++ C A + EL+
Sbjct: 338 AGRIKEAREVLDAMVSSGQS------------PDVVTYNTLVHGHCRAGQTERARELLSD 385
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKV 328
M+ GL N + ++ +A ++
Sbjct: 386 -MVARGLAPNVVTYTALVSGLCKANRL 411
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 113/233 (48%), Gaps = 16/233 (6%)
Query: 83 LKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGK 141
+ ++ P + +YG++++ + GK N + F+K+ S + P+ +AY L++ L
Sbjct: 1 MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60
Query: 142 TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
D+A DM RRG S Y + C G EEA + K+ + + P VV+Y
Sbjct: 61 FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120
Query: 202 LIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM-AED 259
++ SG ++ A +FN+M+ C+PN + N ++ + ++A ++F EM A D
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
+ PD +++ ++D A + ++ +++RML G+ +A
Sbjct: 181 -------------IPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSA 220
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 131/307 (42%), Gaps = 31/307 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD+ +Y + L +AG + E + + M D + P V YN V+
Sbjct: 183 PDSWSYGILIDGLAKAGKLNEAYKLFRRM---------------LDSGITPSAVTYNVVI 227
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + A + + ++ +G +PS T+ ++++ GK + + +++ ++
Sbjct: 228 HGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHV 287
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ L + D+A +EDM +R + L LC AG+ +EA
Sbjct: 288 PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREV 347
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+D + P VV+Y L+ +G + A + + M +PN+VT +V +
Sbjct: 348 LDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCK 407
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM-LDACAAEKRWDDLELVYK 301
EA +F +M K P+++T+ + L C+A + L+L +
Sbjct: 408 ANRLPEACGVFAQM------------KSSGCAPNLFTYTALILGFCSAGQVDGGLKL-FG 454
Query: 302 RMLHHGL 308
M+ G+
Sbjct: 455 EMVCAGI 461
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/281 (20%), Positives = 115/281 (40%), Gaps = 27/281 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PD Y +++ + + A + Q+L G PS Y ++ + ++
Sbjct: 6 VSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAR 65
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F + ++ P+ + Y V+++ + G +EA ++ M G V Y + L
Sbjct: 66 ELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGL 125
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C +G+ EEAL+ +++ ++ P S+ +I I A +F++M+ P+
Sbjct: 126 CKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDS 185
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEM------------------------AEDSNHINRE 266
+ I++ + G EA KLF+ M +++ + +
Sbjct: 186 WSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKS 245
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
KG P +TFN ++DA + D+ + KRM G
Sbjct: 246 MRSKG-CRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDG 285
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 6/208 (2%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V Y+ +++ + + A +L+ + ++ KP+ T ++ + G+ E
Sbjct: 288 PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREV 347
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
V P+ + Y LV+ R G+T+ A + DM RG+ + Y L LC
Sbjct: 348 LDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCK 407
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC---SPNL 230
A + EA ++ P + +YT LI +G + +F +M C SP+
Sbjct: 408 ANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEM--VCAGISPDH 465
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
V + + G A+++ +E E
Sbjct: 466 VVYGTLAAELCKSGRSARALEILREGRE 493
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 18/190 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L +A + E V M+S P++ Y A++
Sbjct: 393 PNVVTYTALVSGLCKANRLPEACGVFAQMKS---------------SGCAPNLFTYTALI 437
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
Q +G + ++ G P YG + + G+ E R+ ++S
Sbjct: 438 LGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRS 497
Query: 125 NALA---YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
A Y+ V+ L GK + A+ V DM R G + + L LC +G+ EA
Sbjct: 498 EAWGDEVYRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEAR 557
Query: 182 MQMDKICKVA 191
+++I +A
Sbjct: 558 AVLEEIMDLA 567
>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
Length = 773
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 120/248 (48%), Gaps = 23/248 (9%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE-- 113
++ + A++NA R Q+E + +L ++K++ +P+ TY V+ AC K L +E
Sbjct: 116 NVYAFTALINAYGRNGQYEASLHLLARMKKEQVEPNLITYNTVLN---ACSKGGLDWEGL 172
Query: 114 --FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
F +++ I P+ + Y L++ G ++A + M G+V A Y L
Sbjct: 173 LNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDT 232
Query: 171 LCSA---GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
+ G+ EE L +M+ N P + Y LI+A D+GN+ AA +F QM + C
Sbjct: 233 FAGSNQLGRVEELLREME---DEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGC 289
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKGLVIPDIY 278
+P++ T + +++ Y G FE+ LF +M + S N + + + + G I
Sbjct: 290 APDVETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQESIN 349
Query: 279 TFNTMLDA 286
F+ M+D+
Sbjct: 350 LFHDMVDS 357
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 87/206 (42%), Gaps = 2/206 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PD++ YN +L+AC R E A V + + + G A TY +++ + V
Sbjct: 184 IQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVE 243
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E R+++ + P+ Y L+ G A + M+R G Y L R
Sbjct: 244 ELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIY 303
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
+ G E+ + ++ P V +Y LIQ + G Q + +F+ M + P+
Sbjct: 304 GNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDD 363
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEM 256
T + ++ GL EA K+ Q M
Sbjct: 364 ATYSALLSVCGRGGLTREAAKIHQHM 389
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 84/389 (21%), Positives = 137/389 (35%), Gaps = 85/389 (21%)
Query: 6 DTVAYRSIAVTLG---QAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNA 62
D V Y+S+ T Q G ++EL E D PDI YN+
Sbjct: 222 DAVTYKSLVDTFAGSNQLGRVEELLR------------------EMEDEGNPPDIAGYNS 263
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-S 121
++ A GA V +Q+++ G P TY ++ + G + V F ++ S
Sbjct: 264 LIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKDLS 323
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL-------------- 167
P Y L+ G E+++ DM G+ A Y L
Sbjct: 324 TPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAA 383
Query: 168 ------------------ARCLCSAGKC---EEALMQMDKICKVANKPLVVSYTGLIQAC 206
A + S GK ++AL+ +I + P V +Y LIQ
Sbjct: 384 KIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGY 443
Query: 207 LDSGNIQNAAYIFNQMK--NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
G A M F +P + + N +++AY + GL +EA++ F E+ +
Sbjct: 444 AKGGLYVEAGSTLYAMNKAGFQAP-VSSVNSVMEAYSKVGLHDEALEFFSELQQKEGSEV 502
Query: 265 RE---------YDKKGLV---------------IPDIYTFNTMLDACAAEKRWD-DLELV 299
E Y GL+ +P + +L C +WD +L+
Sbjct: 503 DERTHETLLGVYCDMGLLEEAKEEFVIIKETSKVPGARVYCLLLSLCVRRSKWDYATQLL 562
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+ + GLH +R DA + +V
Sbjct: 563 DEMIAAGGLHQVVVGIVRGTYDADFSWQV 591
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 95/223 (42%), Gaps = 16/223 (7%)
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI--PNALAYKVLVNTLWREGKTDEAV 146
K + + L+ A ++ F+ +Q+ P Y +++ + REG ++
Sbjct: 43 KLTMQDFSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCS 102
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
EDM + + + L G+ E +L + ++ K +P +++Y ++ AC
Sbjct: 103 EIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKEQVEPNLITYNTVLNAC 162
Query: 207 LDSG-NIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
G + + +F QM++ P+L+T N ++ A GL E+A +F+ M E
Sbjct: 163 SKGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESG---- 218
Query: 265 REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
V+ D T+ +++D A + +E + + M G
Sbjct: 219 --------VVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEG 253
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 17/141 (12%)
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGL-FEEAMKLF 253
V ++T LI A +G + + ++ +MK PNL+T N ++ A + GL +E + LF
Sbjct: 117 VYAFTALINAYGRNGQYEASLHLLARMKKEQVEPNLITYNTVLNACSKGGLDWEGLLNLF 176
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA- 312
+M + + PD+ T+NT+L AC++ + +V+K M G+ +A
Sbjct: 177 AQMRHEG------------IQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAV 224
Query: 313 --KRHLRMILDASRAGKVELL 331
K + +++ G+VE L
Sbjct: 225 TYKSLVDTFAGSNQLGRVEEL 245
>gi|255660972|gb|ACU25655.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
Length = 376
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 138/283 (48%), Gaps = 15/283 (5%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ ++ PD VVYNA+LN R + + F + + + +G + S +++ ++M + GK +
Sbjct: 18 ESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNGKVD 76
Query: 110 LVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
V + +++S ++ +++ Y +LV+ + G D+++ +E E++G V A Y +
Sbjct: 77 EVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMI 136
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CS 227
LC + A+ ++ + K KP V Y LI + + ++A +F +M CS
Sbjct: 137 NGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCS 196
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P ++T N ++ ++ +F EA L +E+ + KGL P + T++ ++
Sbjct: 197 PTIITYNTLINGLCKNKMFGEAYNLVKELLD-----------KGLD-PGVITYSMLMKGL 244
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ R + ++ ++ G + + H +I GK++L
Sbjct: 245 CLDHRVERALXLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQL 287
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 123/292 (42%), Gaps = 29/292 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D++ Y + + G+I + S+ L + K G L D Y+A++N
Sbjct: 93 DSITYGILVHGFCKNGYIDK------SLHVLEMAEQKGGVL---------DAFAYSAMIN 137
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ + A VL + + G KP+ Y ++ ++ K+ FR++ + P
Sbjct: 138 GLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSP 197
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ Y L+N L + EA + V+++ +G+ Y L + LC + E AL
Sbjct: 198 TIITYNTLINGLCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHRVERALXLW 257
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
+++ KP V + LI G +Q A ++ M + C+PNLV+ N +++ + +
Sbjct: 258 NQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKD 317
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
G A+ ++ + + + PDI ++N L+ + R D
Sbjct: 318 GDIRNALVIWARILRNG------------LEPDIISYNITLEGLCSCNRISD 357
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/137 (18%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D L+P ++ Y+ ++ + E A + Q+ +G KP + +++ + + G
Sbjct: 224 ELLDKGLDPGVITYSMLMKGLCLDHRVERALXLWNQVTSKGFKPDVQMHNILIHGLCSVG 283
Query: 107 KYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K L + + + PN +++ L+ +++G A+ + R G+ Y
Sbjct: 284 KMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343
Query: 166 DLARCLCSAGKCEEALM 182
LCS + +A++
Sbjct: 344 ITLEGLCSCNRISDAIL 360
>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Vitis vinifera]
Length = 656
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/329 (23%), Positives = 147/329 (44%), Gaps = 33/329 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V+Y +I G+I+ ++D+MR +EPD Y +++
Sbjct: 282 PNVVSYNTIIHGYSSRGNIEGARRILDAMRV---------------KGIEPDSYTYGSLI 326
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK---VQKS 121
+ + + E A + ++ + G P+A TY +++ C K +L F + V+K
Sbjct: 327 SGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGY--CNKGDLERAFSYRDEMVKKG 384
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+P+ Y +LV+ L+ EG+ EA +++M ++GI+ A Y L G ++A
Sbjct: 385 IMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAF 444
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAY 240
+++ +P V+YT LI ++ A +F + + SP+++ N MV +
Sbjct: 445 DLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGH 504
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+G E A L +EM D+K V PD TFNT++ E + ++ ++
Sbjct: 505 CANGNVERAFMLLKEM-----------DRKS-VPPDEVTFNTLMQGRCREGKVEEARMLL 552
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVE 329
M G+ + + +I R G ++
Sbjct: 553 DEMKRRGIKPDHISYNTLISGYGRRGDIK 581
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 116/255 (45%), Gaps = 17/255 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y + L G + E D+I MR K G + PD + YN ++
Sbjct: 387 PSVSTYNLLVHALFMEGRMGEADDMIKEMR-------KKGII--------PDAITYNILI 431
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N R + AF + ++ +G +P+ TY ++ V+ + + F K+ +
Sbjct: 432 NGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVS 491
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + +V+ G + A +++M+R+ + + L + C GK EEA M
Sbjct: 492 PDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARML 551
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLE 242
+D++ + KP +SY LI G+I++A + ++M + +P L+T N ++K +
Sbjct: 552 LDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCK 611
Query: 243 HGLFEEAMKLFQEMA 257
+ + A +L +EM
Sbjct: 612 NQEGDLAEELLKEMV 626
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 119/274 (43%), Gaps = 14/274 (5%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
+V++ ++ C ++ + AF +K++G P T ++ + L + + + + +
Sbjct: 180 IVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAE 239
Query: 118 VQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
+ + I + + + ++VN L +EGK +A + ME G + Y + S G
Sbjct: 240 MFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGN 299
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNI 235
E A +D + +P +Y LI G ++ A+ +F++M PN VT N
Sbjct: 300 IEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNT 359
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
++ Y G E A EM KKG ++P + T+N ++ A E R +
Sbjct: 360 LIDGYCNKGDLERAFSYRDEMV-----------KKG-IMPSVSTYNLLVHALFMEGRMGE 407
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + K M G+ +A + +I SR G +
Sbjct: 408 ADDMIKEMRKKGIIPDAITYNILINGYSRCGNAK 441
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 85/202 (42%), Gaps = 16/202 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y S+ L + +KE D+ + + D + PD++++NA++
Sbjct: 457 PTHVTYTSLIYVLSRRNRMKEADDLFEKI---------------LDQGVSPDVIMFNAMV 501
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ E AF +L+++ ++ P T+ +M+ GK ++++ I
Sbjct: 502 DGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIK 561
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++Y L++ R G +A ++M G + Y L +CLC + + A
Sbjct: 562 PDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEEL 621
Query: 184 MDKICKVANKPLVVSYTGLIQA 205
+ ++ P +Y LI+
Sbjct: 622 LKEMVNKGISPDDSTYLSLIEG 643
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD ++Y ++ G+ G IK+ F V D M S+ P ++ YNA++
Sbjct: 562 PDHISYNTLISGYGRRGDIKDAFRVRDEMLSIG---------------FNPTLLTYNALI 606
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
+ ++ + A +L+++ +G P +TY ++E M
Sbjct: 607 KCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 644
>gi|15225722|ref|NP_180822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75160493|sp|Q8S8P6.1|PP180_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g32630
gi|20197234|gb|AAM14987.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330253613|gb|AEC08707.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 624
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 145/332 (43%), Gaps = 40/332 (12%)
Query: 6 DTVAYRSIAVTL--------GQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDI 57
D V Y + TL G+ ++LFD E + +E D+
Sbjct: 288 DGVVYNKVTYTLLMELSVKNGKMSDAEKLFD------------------EMRERGIESDV 329
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
VY ++++ R+ + AF + +L ++G PS+ TYG +++ + G+ +
Sbjct: 330 HVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNE 389
Query: 118 VQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
+Q K + + L++ R+G DEA + ME++G +A C +
Sbjct: 390 MQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKR 449
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNI 235
+EA + ++ + K VSYT LI GN++ A +F +M + PN +T N+
Sbjct: 450 YDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNV 509
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
M+ AY + G +EA KL M ++N ++ PD YT+ +++ D+
Sbjct: 510 MIYAYCKQGKIKEARKLRANM--EANGMD----------PDSYTYTSLIHGECIADNVDE 557
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
++ M GL N+ + MI S+AGK
Sbjct: 558 AMRLFSEMGLKGLDQNSVTYTVMISGLSKAGK 589
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 120/277 (43%), Gaps = 16/277 (5%)
Query: 57 IVVYN--AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
I VY+ V+ RR + E + ++++ +G KP A TY ++ + ++ V
Sbjct: 222 ITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGV 281
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ ++K + N + Y +L+ + GK +A ++M RGI +Y L C
Sbjct: 282 LKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCR 341
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVT 232
G + A + D++ + P +Y LI G + A + N+M++ + V
Sbjct: 342 KGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVV 401
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ Y G+ +EA ++ M ++KG D++T NT+ KR
Sbjct: 402 FNTLIDGYCRKGMVDEASMIYDVM-----------EQKGFQ-ADVFTCNTIASCFNRLKR 449
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+D+ + RM+ G+ + + +I + G VE
Sbjct: 450 YDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVE 486
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 2/201 (0%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE-FFR 116
VV+N +++ R+ + A + ++Q+G + T + +Y+ + FR
Sbjct: 400 VVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFR 459
Query: 117 KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
++ + ++Y L++ +EG +EA +M +G+ +A Y + C GK
Sbjct: 460 MMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGK 519
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNI 235
+EA + P +YT LI + N+ A +F++M N VT +
Sbjct: 520 IKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTV 579
Query: 236 MVKAYLEHGLFEEAMKLFQEM 256
M+ + G +EA L+ EM
Sbjct: 580 MISGLSKAGKSDEAFGLYDEM 600
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P+ + YN ++ A ++ + + A + ++ G P + TY ++ +
Sbjct: 500 VQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAM 559
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
F ++ K N++ Y V+++ L + GK+DEA ++M+R+G
Sbjct: 560 RLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKG 604
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 94/235 (40%), Gaps = 20/235 (8%)
Query: 107 KYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ +L E FR++ S + + ++V L R G+ +++ +++ +GI A Y
Sbjct: 204 RIDLCLEIFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYN 263
Query: 166 DLARCLCSA---GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+ E L M K V NK V+YT L++ + +G + +A +F++M
Sbjct: 264 TIINAYVKQRDFSGVEGVLKVMKKDGVVYNK---VTYTLLMELSVKNGKMSDAEKLFDEM 320
Query: 223 KN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
+ ++ ++ G + A LF E+ E KGL P YT+
Sbjct: 321 RERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTE-----------KGLS-PSSYTYG 368
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWE 336
++D E++ M G++ +I R G V+ + ++
Sbjct: 369 ALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYD 423
>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
Length = 707
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 140/311 (45%), Gaps = 34/311 (10%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D + PD V +N++++ + ++E A +L + ++ +PS TY ++ + C
Sbjct: 35 EMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGL--CK 92
Query: 107 KYN------LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ N LV EF V ++P+ + Y +L + L + G+ DEA V++M G +
Sbjct: 93 QQNVDRAKTLVDEF---VSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPN 149
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y L LC A K E+A ++ + P VV+YT ++ G + A +
Sbjct: 150 LVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVE 209
Query: 221 QM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN--------------- 264
M K C+P+++T +++ G +EA +F+EM +
Sbjct: 210 GMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSS 269
Query: 265 REYDKKGLV-----IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
R + + +V P I +N ++D E R D++ V++ M G N K + ++
Sbjct: 270 RTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTY-NIV 328
Query: 320 LDA-SRAGKVE 329
+D + GKV+
Sbjct: 329 MDGLCKHGKVD 339
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 148/371 (39%), Gaps = 66/371 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
PD V Y +A L + G I E F+++ M +L K E+
Sbjct: 113 PDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYEL 172
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
LE PD+V Y +++ + + + A +++ + ++G PS TY +ME +
Sbjct: 173 LETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCR 232
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWR------------------------- 138
G+ + + F++ V K +ALAY LVN +
Sbjct: 233 TGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNA 292
Query: 139 -------EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA 191
EG+ DE + EDM RG V + Y + LC GK +EA ++ +
Sbjct: 293 LMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAG 352
Query: 192 NKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAM 250
P VVSY +I + + A + +QM + P+ VT N ++ + + F++A+
Sbjct: 353 CVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAV 412
Query: 251 KLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHF 310
+ + M K V PD T+NT++ + R D + ML +G
Sbjct: 413 GILKNMI------------KAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVV 460
Query: 311 NAKRHLRMILD 321
+A I+D
Sbjct: 461 SACTTYNTIID 471
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 131/305 (42%), Gaps = 30/305 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y + L + G + E F ++SM S G + PD+V YN ++
Sbjct: 320 PNIKTYNIVMDGLCKHGKVDEAFPFLESMHS-------AGCV--------PDVVSYNIII 364
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + + A VL Q+ Q G P A TY +M +++ + + K+ +
Sbjct: 365 DGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVD 424
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD-LARCLCSAGKCEEALM 182
P+ + Y L++ L + + +A + +M R G V SA Y+ + LC G ++AL+
Sbjct: 425 PDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALL 484
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLE 242
MD + + V+Y I G + A+ + ++M + V+ ++ +
Sbjct: 485 LMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTL--RDEVSYTTVIIGLCK 542
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ A KL +EM KGL I +TFN ++DA KR D+ + +
Sbjct: 543 AEQLDRASKLAREMVA----------VKGLCITS-HTFNLLIDAFTKTKRLDEALTLLEL 591
Query: 303 MLHHG 307
M+ G
Sbjct: 592 MVQRG 596
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/280 (19%), Positives = 110/280 (39%), Gaps = 49/280 (17%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
++ PD+ YN +++ + + + A +L ++ +G P T+ +M+ + GK+
Sbjct: 5 KVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERA 64
Query: 112 YEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ + +++ P+ Y L++ L ++ D A + V++ G V
Sbjct: 65 HSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFV------------ 112
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
P VV+Y+ L G I A + +M N C+PN
Sbjct: 113 -----------------------PDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPN 149
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
LVT N ++ + E+A +L + + +PD+ T+ ++D
Sbjct: 150 LVTYNTLIDGLCKASKTEKAYELLETLVSSG------------FVPDVVTYTIIVDGLCK 197
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
E R D + + ML G + + ++ R G+V+
Sbjct: 198 EGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVD 237
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 14/183 (7%)
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
++ P+ Y +L++ L + KTD+A + +M RG+ + + LC AGK E
Sbjct: 3 ERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFE 62
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMV 237
A + + + +P +Y LI N+ A + ++ + + P++VT +I+
Sbjct: 63 RAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILA 122
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDL 296
+ G +EA +L +EM+ + P++ T+NT++D C A K
Sbjct: 123 DGLCKRGRIDEAFELVKEMSGNG------------CTPNLVTYNTLIDGLCKASKTEKAY 170
Query: 297 ELV 299
EL+
Sbjct: 171 ELL 173
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 120/289 (41%), Gaps = 51/289 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y I L +A KE V+D M + G + PD V YN ++
Sbjct: 355 PDVVSYNIIIDGLFKASKPKEARQVLDQM-------IQAG--------IPPDAVTYNTLM 399
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS--Y 122
+ ++++ A +L+ + + G P TY ++ + + YE ++ ++
Sbjct: 400 AQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCV 459
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA-- 180
+ Y +++ L +EG +A+ ++ M G+ + Y LC G+ +EA
Sbjct: 460 VSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASS 519
Query: 181 -LMQMDKI-------------CK--------------VANKPLVVS---YTGLIQACLDS 209
L +MD + CK VA K L ++ + LI A +
Sbjct: 520 LLSEMDTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKT 579
Query: 210 GNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
+ A + M + CSP+++T N+++ + ++A +LF EMA
Sbjct: 580 KRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMA 628
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 56/276 (20%), Positives = 112/276 (40%), Gaps = 27/276 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM-------------RSLPKKKFKTGTLER--- 48
PD V Y ++ L Q + + ++++ M ++ + K G L++
Sbjct: 425 PDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALL 484
Query: 49 -----WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
+E + V YN ++ + + + A +L ++ + S TT V+ +
Sbjct: 485 LMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTT---VIIGLC 541
Query: 104 ACGKYNLVYEFFRKVQ--KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
+ + + R++ K + + +L++ + + DEA++ +E M +RG S
Sbjct: 542 KAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSV 601
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y + CLC K ++A D++ VSYT LI G + A + +
Sbjct: 602 ITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEE 661
Query: 222 MKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
M + C + + C + A G EEA +L + M
Sbjct: 662 MASSDCEIDDLKCRKLYLALRGQGRGEEAAELLRRM 697
>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
Length = 862
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 142/332 (42%), Gaps = 38/332 (11%)
Query: 5 PDTVAYRSIAVTLGQA-------GHIKELFD------------VIDSMRSLPKKKFKTGT 45
P+ V Y +I L +A G ++ + D +ID + G
Sbjct: 197 PNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGV 256
Query: 46 LERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML- 103
L+ D ++PD+V YN +++ + + + A VLQ + +G KP TY +++ +
Sbjct: 257 LQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCK 316
Query: 104 --ACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
A + + V + + K P+ Y L++ G+ E V +E+M RG+
Sbjct: 317 AQAVDRADGVLQHM--IDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDV 374
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L LC GKC EA + + KP V Y L+ G I + + +
Sbjct: 375 VTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDL 434
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
M N SPN NI++ AY + + +EAM +F M++ + PD+ T+
Sbjct: 435 MVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHG------------LSPDVVTY 482
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
++DA R DD L + +M++ G+ N+
Sbjct: 483 GILIDALCKLGRVDDAVLKFNQMINDGVTPNS 514
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 119/277 (42%), Gaps = 14/277 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD+V Y +++A + + + A Q+ G P++ + ++ + ++
Sbjct: 475 LSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAE 534
Query: 113 E-FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E FF + PN + + ++ L EG+ A ++ MER G+ + Y L
Sbjct: 535 ELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGH 594
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C AG+ +EA +D + V KP ++SY L++ +G I NA +F +M + +P
Sbjct: 595 CLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGA 654
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT + +++ F EA +L+ M + DIYT+N +L+
Sbjct: 655 VTYSTILQGLFHTRRFSEAKELYLNMIKSGQQW------------DIYTYNIILNGLCKT 702
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
D+ +++ + L N MI + G+
Sbjct: 703 NCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGR 739
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/395 (21%), Positives = 155/395 (39%), Gaps = 104/395 (26%)
Query: 5 PDTVAYRSIAVTLGQA-------GHIKELFDV-----IDSMRSLPKKKFKTGTLERWDPR 52
PD V Y +I L +A G ++ + D I + L TG + R
Sbjct: 302 PDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRR 361
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM----- 99
LE PD+V Y+ +L+ + + A + + ++G KP+ T YG+++
Sbjct: 362 LEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAA 421
Query: 100 -----------EVMLACGK------YNLV--------------YEFFRKVQKSYIPNALA 128
++M+A G +N+V + F R Q P+ +
Sbjct: 422 RGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVT 481
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG---KCEEALMQM- 184
Y +L++ L + G+ D+AV M G+ ++ ++ L LC+ K EE +M
Sbjct: 482 YGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMW 541
Query: 185 -------------------------------DKICKVANKPLVVSYTGLIQACLDSGNIQ 213
D + +V +P V+SY LI +G
Sbjct: 542 DQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTD 601
Query: 214 NAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGL 272
AA + + M + P+L++ + +++ Y + G + A LF+EM +KG
Sbjct: 602 EAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREML-----------RKG- 649
Query: 273 VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
V P T++T+L +R+ + + +Y M+ G
Sbjct: 650 VTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSG 684
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 107/254 (42%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V + +I L G + +IDSM ER R P+++ YN ++
Sbjct: 547 PNVVFFNTIMCNLCNEGQVMVAQRLIDSM-------------ERVGVR--PNVISYNTLI 591
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + A +L + G KP +Y ++ G+ + Y FR+ ++K
Sbjct: 592 GGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVT 651
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P A+ Y ++ L+ + EA +M + G Y + LC +EA
Sbjct: 652 PGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKI 711
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+C +P ++++T +I G ++A +F + + PN+VT IM+K ++
Sbjct: 712 FQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQ 771
Query: 243 HGLFEEAMKLFQEM 256
GL +E LF M
Sbjct: 772 EGLLDEFDNLFLAM 785
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 11/177 (6%)
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQM 222
Y L C C G+ E I K + V L+ D+ + A I +M
Sbjct: 93 YSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILLRRM 152
Query: 223 KNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
F C PN+V+CN ++K EEA++L MAED G P++ T+N
Sbjct: 153 PEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGG---------GNCTPNVVTYN 203
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
T++D + D E V + M+ G+ + + +I +A V+ E +H+
Sbjct: 204 TIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHM 260
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/267 (20%), Positives = 110/267 (41%), Gaps = 20/267 (7%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
E WD + P++V +N ++ Q A ++ +++ G +P+ +Y ++
Sbjct: 538 FEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLA 597
Query: 106 GKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G+ + + V P+ ++Y L+ + G+ D A +M R+G+ A Y
Sbjct: 598 GRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTY 657
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
+ + L + EA + K + + +Y ++ + + A IF ++
Sbjct: 658 STILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIF---QS 714
Query: 225 FCS----PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
CS PN++T IM+ + G ++AM LF + GLV P++ T+
Sbjct: 715 LCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPS-----------HGLV-PNVVTY 762
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHG 307
M+ E D+ + ++ M G
Sbjct: 763 CIMMKNIIQEGLLDEFDNLFLAMEKSG 789
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 2/149 (1%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
DI YN +LN + + AF + Q L + +P+ T+ ++++V+ G+ + F
Sbjct: 688 DIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLF 747
Query: 116 RKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ +PN + Y +++ + +EG DE + ME+ G + + + R L
Sbjct: 748 ASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLLGR 807
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLI 203
G+ A + KI ++ N L S T L+
Sbjct: 808 GEIMRAGAYLSKIDEM-NFSLEASTTSLL 835
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/257 (19%), Positives = 100/257 (38%), Gaps = 18/257 (7%)
Query: 58 VVYNAVLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR 116
VV N +LN C ++ E +L+++ + G P+ + +++ + + E
Sbjct: 126 VVINQLLNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLH 185
Query: 117 KVQK----SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ + + PN + Y +++ L + D A ++ M +G+ Y + LC
Sbjct: 186 TMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLC 245
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
A + A + + KP VV+Y +I + + A + M P++V
Sbjct: 246 KAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVV 305
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ + + A + Q M + V PDI T+N ++ +
Sbjct: 306 TYNTIIDGLCKAQAVDRADGVLQHMIDKD------------VKPDIQTYNCLIHGYLSTG 353
Query: 292 RWDDLELVYKRMLHHGL 308
W ++ + M GL
Sbjct: 354 EWKEVVRRLEEMYARGL 370
>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 1627
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 146/305 (47%), Gaps = 35/305 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKE---LFDVIDSMRSLP-------------KKKFKTGTLER 48
PDTV ++ LG+AG + + LF ++++R +P + K + +
Sbjct: 1323 PDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPS 1382
Query: 49 WDPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
W R++ P Y+ +++ + + E A +L+++ ++G P Y +++ +
Sbjct: 1383 WFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALG 1442
Query: 104 ACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+Y+L E F++++++ +A Y V++ L + G+ D+A++ ++M + G
Sbjct: 1443 KAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVY 1502
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y L L G +EAL M ++ + P + SY ++ +G A + + M
Sbjct: 1503 AYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNM 1562
Query: 223 K-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
K + P++V+ N ++ A G+FEEA KL +EM N + EY D+ T++
Sbjct: 1563 KQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEM----NTLGFEY--------DLITYS 1610
Query: 282 TMLDA 286
++L+A
Sbjct: 1611 SILEA 1615
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 131/278 (47%), Gaps = 15/278 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD V Y+A+++A + + + A +L ++K+ G +P+ Y +++ + +
Sbjct: 1218 PDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSL 1277
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F +++ Y P+ Y L+ L + G+ DEA +M+R G ++ L
Sbjct: 1278 FEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGK 1337
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS-GNIQNAAYIFNQMK-NFCSPNLV 231
AG+ ++A+ ++ + P VV+Y +I+A +S F +MK + SP+
Sbjct: 1338 AGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSF 1397
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T +I++ + + E+AM L +EM D+KG P + +++DA K
Sbjct: 1398 TYSILIDGFCKTNRMEKAMMLLEEM-----------DEKGFP-PCPAAYCSLIDALGKAK 1445
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
R+D +++ + + +A+ + MI +AG+++
Sbjct: 1446 RYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLD 1483
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 119/262 (45%), Gaps = 20/262 (7%)
Query: 55 PDIVVYNAVLNACVR----RKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
P VV L+ VR K A + Q+K + +P A Y ++ +++ G+Y
Sbjct: 1143 PICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEK 1202
Query: 111 VYEFFRKV--QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
V++ + ++ + P+ + Y L++ + G+ D A+ + +M+ G+ + +Y L
Sbjct: 1203 VHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLI 1262
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
AL +++ +P V +YT LI+ +G I A + F +M + C
Sbjct: 1263 ALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCR 1322
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P+ V N M+ + G ++AMKLFQEM + IP + T+NT++ A
Sbjct: 1323 PDTVFMNNMINFLGKAGRLDDAMKLFQEM------------ETLRCIPSVVTYNTIIKAL 1370
Query: 288 AAEK-RWDDLELVYKRMLHHGL 308
K R ++ ++RM G+
Sbjct: 1371 FESKSRASEVPSWFERMKESGI 1392
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/327 (20%), Positives = 137/327 (41%), Gaps = 35/327 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSL---PKKKFKT-------------GTLE 47
+PDTV Y ++ + G +++ M+ + P K T G L
Sbjct: 1217 FPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALS 1276
Query: 48 RWDPR----LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
++ PD+ Y ++ + + + A+ +++++G +P ++ +
Sbjct: 1277 LFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLG 1336
Query: 104 ACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWR-EGKTDEAVSAVEDMERRGIVGSA 161
G+ + + F++++ IP+ + Y ++ L+ + + E S E M+ GI S+
Sbjct: 1337 KAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSS 1396
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L C + E+A+M ++++ + P +Y LI A + A +F +
Sbjct: 1397 FTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQE 1456
Query: 222 MKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
+K C S + +M+K + G ++A+ +F EM +K G PD+Y +
Sbjct: 1457 LKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEM-----------NKLGCA-PDVYAY 1504
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHG 307
N ++ A D+ +RM HG
Sbjct: 1505 NALMSGLARTGMLDEALSTMRRMQEHG 1531
>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
Length = 580
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/360 (23%), Positives = 152/360 (42%), Gaps = 45/360 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLER---- 48
P+ V+Y +I G+I+ ++D+MR SL K G LE
Sbjct: 206 PNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGL 265
Query: 49 WDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+D +E P+ V YN +++ + E AF ++ ++G PS +TY L++ +
Sbjct: 266 FDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFM 325
Query: 105 CGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ + +++ +K IP+A+ Y +L+N R G A +M +GI +
Sbjct: 326 EGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVT 385
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y L L + +EA +KI P V+ + +I +GN++ A + +M
Sbjct: 386 YTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMD 445
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS---NHINRE-----YDKKGLVI 274
+ P+ VT N +++ G EEA L EM +HI+ Y ++G +
Sbjct: 446 RKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIK 505
Query: 275 ---------------PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
P + T+N ++ + D E + K M++ G+ + +L +I
Sbjct: 506 DAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLI 565
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 134/306 (43%), Gaps = 18/306 (5%)
Query: 26 LFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ 85
+FD+++ L K + G +E +P++V YN +++ R EGA +L ++
Sbjct: 181 VFDLLEG--KLKKAREFIGFMEGLG--FKPNVVSYNTIIHGYSSRGNIEGARRILDAMRV 236
Query: 86 QGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDE 144
+G +P + TYG ++ M G+ F K V+ +PNA+ Y L++ +G +
Sbjct: 237 KGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLER 296
Query: 145 AVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204
A S ++M ++GI+ S + Y L L G+ EA + ++ K P ++Y LI
Sbjct: 297 AFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILIN 356
Query: 205 ACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
GN + A + N+M P VT ++ +EA LF+++ +
Sbjct: 357 GYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQG--- 413
Query: 264 NREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDAS 323
V PD+ FN M+D A + ++ K M + + ++
Sbjct: 414 ---------VSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRC 464
Query: 324 RAGKVE 329
R GKVE
Sbjct: 465 REGKVE 470
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 87/210 (41%), Gaps = 19/210 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y S+ L + +KE D+ + + D + PD++++NA++
Sbjct: 381 PTHVTYTSLIYVLSRRNRMKEADDLFEKI---------------LDQGVSPDVIMFNAMI 425
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ E AF +L+++ ++ P T+ +M+ GK +++ I
Sbjct: 426 DGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIK 485
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++Y L++ R G +A ++M G + Y L +CLC + + A
Sbjct: 486 PDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEEL 545
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQ 213
+ ++ P +Y LI+ GN+
Sbjct: 546 LKEMVNKGISPDDSTYLSLIEGM---GNVD 572
>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 747
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 143/323 (44%), Gaps = 21/323 (6%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + ++ P++ YN ++ + A + +++ +G P+ TY +++
Sbjct: 195 EMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLR 254
Query: 107 KYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K + ++ R + K PN ++Y V++N L REG+ E + +M RRG Y
Sbjct: 255 KIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYN 314
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--K 223
L + C G +AL+ ++ + P V++YT LI + +GN+ A +QM +
Sbjct: 315 TLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVR 374
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
C PN T +V + + G EA ++ +EM ++ P + T+N +
Sbjct: 375 GLC-PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNG------------FSPSVVTYNAL 421
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARA- 341
++ + +D V + M GL + + ++ R+ V E L + E + +
Sbjct: 422 INGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGI 481
Query: 342 --DRITPPALIKERFCNRLENKD 362
D IT +LI + FC + K+
Sbjct: 482 KPDTITYSSLI-QGFCEQRRTKE 503
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 137/310 (44%), Gaps = 34/310 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTL------ 46
P+ ++Y + L + G +KE+ V+ M +L K K G
Sbjct: 273 PNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVM 332
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E L P ++ Y +++++ + A L Q++ +G P+ TY +++
Sbjct: 333 HAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQ 392
Query: 105 CGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G N Y R++ + + P+ + Y L+N GK ++A++ +EDM+ +G+
Sbjct: 393 KGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVS 452
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y + C + +EAL ++ + KP ++Y+ LIQ + + A ++ +M
Sbjct: 453 YSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEML 512
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ P+ T ++ AY G E+A++L EM E KG V+PD+ T++
Sbjct: 513 RVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVE-----------KG-VLPDVVTYSV 560
Query: 283 MLDACAAEKR 292
+++ + R
Sbjct: 561 LINGLNKQSR 570
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/358 (20%), Positives = 137/358 (38%), Gaps = 52/358 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLERWDPR 52
P+ Y ++ Q G++ E + V+ M +L TG +E
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAV 437
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
LE PD+V Y+ VL+ R + A V +++ ++G KP TY +++
Sbjct: 438 LEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCE 497
Query: 105 CGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
+ + + ++ + +P + Y L+N EG ++A+ +M +G++
Sbjct: 498 QRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVT 557
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L L + EA + K+ + P V+Y LI+ C NI+ + + + +K
Sbjct: 558 YSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENC---SNIEFKS-VVSLIK 613
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
FC G+ EA ++F+ M NH PD +N M
Sbjct: 614 GFCMK---------------GMMTEADQVFESML-GKNH-----------KPDGTAYNIM 646
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
+ +YK M+ G + + ++ + GKV L H+ R+
Sbjct: 647 IHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRS 704
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 87/209 (41%), Gaps = 14/209 (6%)
Query: 122 YIPNALAYKVLVNTLWREGKTDE-AVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
++P L+Y +++ R + A + ++M + + Y L R C AG + A
Sbjct: 165 FMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVA 224
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKA 239
L DK+ P VV+Y LI I + + M PNL++ N+++
Sbjct: 225 LTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVING 284
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
G +E + EM +++G + ++ T+NT++ E + ++
Sbjct: 285 LCREGRMKEVSFVLTEM-----------NRRGYSLDEV-TYNTLIKGYCKEGNFHQALVM 332
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+ ML HGL + + +I +AG +
Sbjct: 333 HAEMLRHGLTPSVITYTSLIHSMCKAGNM 361
>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
Length = 448
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/324 (21%), Positives = 141/324 (43%), Gaps = 28/324 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD + Y+ ++N + + ++ A+ +L +++++G P Y +++ + G+ +
Sbjct: 31 PDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVH 90
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+R +Q+ P+ + Y +LV+ L + + +A +EDM G + Y L C
Sbjct: 91 YRDMQRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKL 150
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
G +EA++ +++ + + P V +Y LI Q+ A + +M + C PN +T
Sbjct: 151 GNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITY 210
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDS------------------NHINREYDKKGLV-- 273
N ++ + ++ G + +A L Q M ++ Y+ L+
Sbjct: 211 NTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTD 270
Query: 274 ---IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+PDIYT+N M+ R DD + +RM G + + ++ +A +V+
Sbjct: 271 RGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDE 330
Query: 331 LEITWEHLARA----DRITPPALI 350
+E L D +T LI
Sbjct: 331 AYEVYEVLRNGGYFLDVVTCSTLI 354
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 121/257 (47%), Gaps = 14/257 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP+ + YN ++++ V+ ++ AF + Q + ++ KPS T+ L++++ G+ +L YE
Sbjct: 204 EPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYE 263
Query: 114 FFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F+ + +P+ Y ++++ R + D+A +E M G Y + LC
Sbjct: 264 LFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLC 323
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
A + +EA + + VV+ + LI S + +A + +M +N +P++V
Sbjct: 324 KASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVV 383
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
I++ + + ++++ F EM + KG V P + T++ ++D
Sbjct: 384 AYTILIHGFCKADQLDKSLAFFSEMLD-----------KGCV-PTVITYSIVIDKLCKSA 431
Query: 292 RWDDLELVYKRMLHHGL 308
R D ++ K ML G+
Sbjct: 432 RVRDGCMLLKTMLERGV 448
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/154 (18%), Positives = 69/154 (44%), Gaps = 16/154 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y SI L +A + E ++V + +R+ G D+V + ++
Sbjct: 310 PDVVTYNSIVSGLCKASQVDEAYEVYEVLRN-------GGYF--------LDVVTCSTLI 354
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + ++ + A +L+++++ G P Y +++ + + FF + + K +
Sbjct: 355 DGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCV 414
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
P + Y ++++ L + + + ++ M RG+
Sbjct: 415 PTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448
>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1016
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 140/295 (47%), Gaps = 21/295 (7%)
Query: 42 KTGTLERWDPRLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSAT 93
K G +ER + L+ P+++ Y++++N ++ + A V++++ Q P+A
Sbjct: 390 KVGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAY 449
Query: 94 TYGLVMEVMLACGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDM 152
Y ++++ GK + + + +++ S + N + + VLVN L R + DEA ++D+
Sbjct: 450 VYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKRGKRMDEAEELLKDV 509
Query: 153 ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI 212
RG++ Y L AGK AL ++++ + + VV+Y LI L+ G
Sbjct: 510 TSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEKSIPFDVVTYNVLINGLLEHGKY 569
Query: 213 QNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGL 272
+ + ++ +PN T NIM+KAY + G + A++L+ EM K
Sbjct: 570 EAKSVYSGMIEMGLAPNQATYNIMIKAYCKQGELDNALELWNEM------------KSHK 617
Query: 273 VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
++P T NT++ + + V M G+H N H ++ +S++GK
Sbjct: 618 IMPSSITCNTLVVGLSEAGEIEKAMNVLNEMSVMGIHPNLVIHRVLLNASSKSGK 672
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/380 (20%), Positives = 153/380 (40%), Gaps = 48/380 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y SI L + G + E +++ M+ + ++P+ V Y ++
Sbjct: 271 PDVVTYSSIVNGLCKDGRLSEAQELLREMKKMG---------------VDPNHVAYTTLI 315
Query: 65 NACVRR-KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SY 122
++ + WE AF QL +G +++ + K + FR + K +
Sbjct: 316 DSLFKAGSAWE-AFACQSQLVVRGMTLDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLNL 374
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
IPN++ Y L++ + G + S +++ME + I + Y + G +EA+
Sbjct: 375 IPNSITYTALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAIN 434
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYL 241
M K+ P Y LI +G + A ++N+MK + N V +++V
Sbjct: 435 VMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNLK 494
Query: 242 EHGLFEEAMKLFQEMAEDS---NHINREYDKKGLV-------------------IP-DIY 278
+EA +L +++ +H+N G IP D+
Sbjct: 495 RGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEKSIPFDVV 554
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
T+N +++ ++ + + VY M+ GL N + MI + G+++ W +
Sbjct: 555 TYNVLINGLLEHGKY-EAKSVYSGMIEMGLAPNQATYNIMIKAYCKQGELDNALELWNEM 613
Query: 339 ARADRITPPALIKERFCNRL 358
++ +I P ++ CN L
Sbjct: 614 -KSHKIMPSSIT----CNTL 628
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 73/362 (20%), Positives = 141/362 (38%), Gaps = 78/362 (21%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D + + ++ +AG + D+++ MR K G L DIV YN ++N
Sbjct: 146 DVIGFNTLIDGYCKAGEMSLALDLVERMR-------KEGLL--------SDIVSYNTLIN 190
Query: 66 ACVRRKQWEGAFWVLQQLKQ-QGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+R +++ A +L ++ + +G K S +N+ + +
Sbjct: 191 GFCKRGEYDKAKSLLHEISESRGVKDSVF--------------FNIDDRIKKDDNLNLEA 236
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ + Y +++T ++ +EA + E+M G + Y + LC G+ EA +
Sbjct: 237 DLITYTTIISTYCKQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELL 296
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNI-------------------------------- 212
++ K+ P V+YT LI + +G+
Sbjct: 297 REMKKMGVDPNHVAYTTLIDSLFKAGSAWEAFACQSQLVVRGMTLDLVMCTTLVDGLFKS 356
Query: 213 ---QNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD 268
+ A +F + PN +T ++ Y + G E L QEM E HIN
Sbjct: 357 SKPKEAEDMFRALSKLNLIPNSITYTALIDGYCKVGDMERVESLLQEMEE--KHIN---- 410
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
P++ T++++++ + D+ V K+ML + NA + +I +AGK
Sbjct: 411 ------PNVITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDGYCKAGKQ 464
Query: 329 EL 330
E+
Sbjct: 465 EI 466
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/291 (20%), Positives = 114/291 (39%), Gaps = 62/291 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P ++ ++ V L +AG I++ +V++ M + + P++V++ +L
Sbjct: 620 PSSITCNTLVVGLSEAGEIEKAMNVLNEMSVMG---------------IHPNLVIHRVLL 664
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
NA + + + +QL G K
Sbjct: 665 NASSKSGKANAVLQMHEQLVDMGLK----------------------------------I 690
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N AY L+ R T +A S ++ M R G V Y L R C + ++AL
Sbjct: 691 NQEAYNNLIVVFCRLRMTKKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATY 750
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEH 243
++ P +V+Y L+ L +G + +F++MK N +P+ T + ++ Y +
Sbjct: 751 TQMLNEGVSPNIVTYNLLLGGLLGAGLMAERDELFDKMKENGLNPDASTYDTLISGYGKI 810
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
G +E+++L+ EM +G V P T+N ++ A + D
Sbjct: 811 GNKKESIRLYCEMV-----------AQGFV-PKTSTYNVLISDFAKVGKMD 849
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/323 (17%), Positives = 130/323 (40%), Gaps = 49/323 (15%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D V Y ++++ + + A +++++ ++ TY +++ +L GKY +
Sbjct: 517 DHVNYTSLMDGFFKAGKESAALNMVEEMTEKSIPFDVVTYNVLINGLLEHGKYEAKSVYS 576
Query: 116 RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
++ PN Y +++ ++G+ D A+ +M+ I+ S+ L L AG
Sbjct: 577 GMIEMGLAPNQATYNIMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAG 636
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN----------- 224
+ E+A+ ++++ + P +V + L+ A SG + Q+ +
Sbjct: 637 EIEKAMNVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYN 696
Query: 225 -----FCS--------------------PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
FC + VT N +++ Y E ++A+ + +M +
Sbjct: 697 NLIVVFCRLRMTKKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATYTQMLNE 756
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
V P+I T+N +L + + ++ +M +GL+ +A + +I
Sbjct: 757 G------------VSPNIVTYNLLLGGLLGAGLMAERDELFDKMKENGLNPDASTYDTLI 804
Query: 320 LDASRAG-KVELLEITWEHLARA 341
+ G K E + + E +A+
Sbjct: 805 SGYGKIGNKKESIRLYCEMVAQG 827
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 16/192 (8%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
DTV Y ++ ++ H+K K T T + + + P+IV YN +L
Sbjct: 726 DTVTYNALIRGYCESSHVK--------------KALATYT-QMLNEGVSPNIVTYNLLLG 770
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG-KYNLVYEFFRKVQKSYIP 124
+ + ++K+ G P A+TY ++ G K + + V + ++P
Sbjct: 771 GLLGAGLMAERDELFDKMKENGLNPDASTYDTLISGYGKIGNKKESIRLYCEMVAQGFVP 830
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
Y VL++ + GK D+A + +M+ RG+ S++ Y L C+ K + +
Sbjct: 831 KTSTYNVLISDFAKVGKMDQARELLNEMQVRGVPPSSSTYDILICGWCNLSKHPDLDRTL 890
Query: 185 DKICKVANKPLV 196
KI + K L+
Sbjct: 891 KKIYRTDAKNLI 902
>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
Length = 543
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 142/326 (43%), Gaps = 30/326 (9%)
Query: 7 TVAYRSIAV-TLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
TV +I V +L AG I ++ V+D M++ + D+ +Y AV+N
Sbjct: 201 TVGTYTILVDSLSTAGDISKVEAVVDEMKA---------------KNVAGDVYLYTAVIN 245
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP- 124
A R A V + G +P+ TYG+++ G+ +Q +
Sbjct: 246 AYCRAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGH 305
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N + + +++ R+G D A+ ME+ GI Y LA LC + EA +
Sbjct: 306 NQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLL 365
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEH 243
+ + P V+YT LI G++ A +F +M + P++VT N+M+ Y++
Sbjct: 366 HIMIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKK 425
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G EA + +EM +KKGLV PD+YT+ +++ + D +++ M
Sbjct: 426 GSIREAERFRKEM-----------EKKGLV-PDVYTYASLVHGHCVNGKVDVALKLFEEM 473
Query: 304 LHHGLHFNAKRHLRMILDASRAGKVE 329
H G N + +I ++ G+ E
Sbjct: 474 KHRGTEPNVVAYTALISGLAKEGRSE 499
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 1/171 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+E D+ YN + R + A +L + ++G P+ TY ++ + G
Sbjct: 338 IELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLISIHCKEGDMVEAR 397
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
FR++ K +P+ + Y V+++ ++G EA ++ME++G+V Y L
Sbjct: 398 RLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGH 457
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
C GK + AL +++ +P VV+YT LI G + A +++ M
Sbjct: 458 CVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAFQLYDDM 508
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 102/244 (41%), Gaps = 24/244 (9%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG--KYNLVYE-- 113
+++N +++ R+ + A V +++ G + TY LACG + N + E
Sbjct: 308 IIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYN-----TLACGLCRVNRMAEAK 362
Query: 114 --FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++K PN + Y L++ +EG EA +M +G + S Y +
Sbjct: 363 TLLHIMIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGY 422
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNL 230
G EA ++ K P V +Y L+ +G + A +F +MK+ + PN+
Sbjct: 423 IKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNV 482
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
V ++ + G EEA +L+ +M K GL PD ++ ++ + +
Sbjct: 483 VAYTALISGLAKEGRSEEAFQLYDDML-----------KAGLT-PDDSLYSALVGSLHTD 530
Query: 291 KRWD 294
R D
Sbjct: 531 NRKD 534
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P +V YN +++ +++ A ++++++G P TY ++ GK ++ +
Sbjct: 410 PSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKL 469
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F +++ + PN +AY L++ L +EG+++EA +DM + G+ +LY L L
Sbjct: 470 FEEMKHRGTEPNVVAYTALISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLYSALVGSL 527
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 1/150 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ V Y +++ + A + +++ +G PS TY ++M+ + G F
Sbjct: 375 PNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERF 434
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++++K +P+ Y LV+ GK D A+ E+M+ RG + Y L L
Sbjct: 435 RKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAK 494
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLI 203
G+ EEA D + K P Y+ L+
Sbjct: 495 EGRSEEAFQLYDDMLKAGLTPDDSLYSALV 524
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 85/223 (38%), Gaps = 52/223 (23%)
Query: 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC---------------- 170
LA V+V+ + G+ D+A + +++M R G+ +A Y L C
Sbjct: 133 LAASVVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELLEI 192
Query: 171 -------------------LCSAGKCE--EALMQMDKICKVANKPLVVSYTGLIQACLDS 209
L +AG EA++ K VA V YT +I A +
Sbjct: 193 MENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGD--VYLYTAVINAYCRA 250
Query: 210 GNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD 268
GN++ A+ +F++ + N PN T +++ + + G E A L +M N+
Sbjct: 251 GNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQ--- 307
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
FNTM+D + D+ V M G+ +
Sbjct: 308 ---------IIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELD 341
>gi|449449679|ref|XP_004142592.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08610-like [Cucumis sativus]
gi|449516715|ref|XP_004165392.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08610-like [Cucumis sativus]
Length = 594
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 131/304 (43%), Gaps = 26/304 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDI+ YN V+ ++ E A +L + G P TY V+ M G ++ EF
Sbjct: 205 PDIITYNMVIGCLCKQGHLESAIELLNDMSLSGCPPDVITYNAVIRHMFDNGCFDQAVEF 264
Query: 115 FR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ +++K P + Y +L+ +W+ T A+ +E+M G Y L C
Sbjct: 265 WKEQLRKGTPPYLITYTILIELVWKHRGTVCALEVLEEMANEGCYPDLVTYNSLINLTCK 324
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVT 232
GK E+A + +D + P V+Y L+ + G+ I M + P +VT
Sbjct: 325 QGKFEDAALVIDNLLFHGMVPDAVTYNTLLHSLSRRGHWDEVDEILKIMSISLQPPTVVT 384
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKGLV----------- 273
CN+++ ++GL + A+ +M + N + K+G+V
Sbjct: 385 CNVLINGLCKNGLLDSAINFLNQMFSYNCLPDIITYNTLLGALCKEGMVDEAFQLLHLLT 444
Query: 274 ----IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK-V 328
P + ++NT+LD + + D +Y +M+ +G+ + H +I R+ K V
Sbjct: 445 DTACSPGLISYNTVLDGLSRKGYMDKAMSLYSQMMENGIIPDDTTHRSIIWGFCRSNKFV 504
Query: 329 ELLE 332
E +E
Sbjct: 505 EAVE 508
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 96/215 (44%), Gaps = 2/215 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V YN+++N ++ ++E A V+ L G P A TY ++ + G ++ V E
Sbjct: 310 PDLVTYNSLINLTCKQGKFEDAALVIDNLLFHGMVPDAVTYNTLLHSLSRRGHWDEVDEI 369
Query: 115 FRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ + S P + VL+N L + G D A++ + M + Y L LC
Sbjct: 370 LKIMSISLQPPTVVTCNVLINGLCKNGLLDSAINFLNQMFSYNCLPDIITYNTLLGALCK 429
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVT 232
G +EA + + A P ++SY ++ G + A +++Q M+N P+ T
Sbjct: 430 EGMVDEAFQLLHLLTDTACSPGLISYNTVLDGLSRKGYMDKAMSLYSQMMENGIIPDDTT 489
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
++ + F EA++ + + + +N +
Sbjct: 490 HRSIIWGFCRSNKFVEAVETLKGILKGGYEVNSSF 524
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 106/278 (38%), Gaps = 49/278 (17%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV------------- 101
PD ++ V + + A VL+ + G P TY +V+
Sbjct: 170 PDFECCINMIRGFVNTDRMDKAVQVLKIMVMSGGVPDIITYNMVIGCLCKQGHLESAIEL 229
Query: 102 ----------------------MLACGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWR 138
M G ++ EF++ +++K P + Y +L+ +W+
Sbjct: 230 LNDMSLSGCPPDVITYNAVIRHMFDNGCFDQAVEFWKEQLRKGTPPYLITYTILIELVWK 289
Query: 139 EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
T A+ +E+M G Y L C GK E+A + +D + P V+
Sbjct: 290 HRGTVCALEVLEEMANEGCYPDLVTYNSLINLTCKQGKFEDAALVIDNLLFHGMVPDAVT 349
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y L+ + G+ I M + P +VTCN+++ ++GL + A+ +M
Sbjct: 350 YNTLLHSLSRRGHWDEVDEILKIMSISLQPPTVVTCNVLINGLCKNGLLDSAINFLNQMF 409
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
Y+ +PDI T+NT+L A E D+
Sbjct: 410 --------SYN----CLPDIITYNTLLGALCKEGMVDE 435
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 108/247 (43%), Gaps = 28/247 (11%)
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
++ IP+ ++ + D+AV ++ M G V Y + CLC G E
Sbjct: 166 RNQIPDFECCINMIRGFVNTDRMDKAVQVLKIMVMSGGVPDIITYNMVIGCLCKQGHLES 225
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQMKNFCSPNLVTCNIMVK 238
A+ ++ + P V++Y +I+ D+G A + Q++ P L+T I+++
Sbjct: 226 AIELLNDMSLSGCPPDVITYNAVIRHMFDNGCFDQAVEFWKEQLRKGTPPYLITYTILIE 285
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+H A+++ +EMA + + PD+ T+N++++ + +++D L
Sbjct: 286 LVWKHRGTVCALEVLEEMANEGCY------------PDLVTYNSLINLTCKQGKFEDAAL 333
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRIT-----PPALIKER 353
V +L HG+ +A + ++ SR G W+ + +I PP ++
Sbjct: 334 VIDNLLFHGMVPDAVTYNTLLHSLSRRGH-------WDEVDEILKIMSISLQPPTVVT-- 384
Query: 354 FCNRLEN 360
CN L N
Sbjct: 385 -CNVLIN 390
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 82/187 (43%), Gaps = 13/187 (6%)
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
V +P+ + Y +++ L ++G + A+ + DM G Y + R + G
Sbjct: 199 VMSGGVPDIITYNMVIGCLCKQGHLESAIELLNDMSLSGCPPDVITYNAVIRHMFDNGCF 258
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIM 236
++A+ + + P +++YT LI+ A + +M N C P+LVT N +
Sbjct: 259 DQAVEFWKEQLRKGTPPYLITYTILIELVWKHRGTVCALEVLEEMANEGCYPDLVTYNSL 318
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ + G FE+A + + ++PD T+NT+L + + WD++
Sbjct: 319 INLTCKQGKFEDAALVIDNLLFHG------------MVPDAVTYNTLLHSLSRRGHWDEV 366
Query: 297 ELVYKRM 303
+ + K M
Sbjct: 367 DEILKIM 373
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/256 (19%), Positives = 104/256 (40%), Gaps = 17/256 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ +L + GH E+ +++ K + +L+ P +V N ++
Sbjct: 345 PDAVTYNTLLHSLSRRGHWDEVDEIL---------KIMSISLQ------PPTVVTCNVLI 389
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + + A L Q+ P TY ++ + G + ++ + +
Sbjct: 390 NGLCKNGLLDSAINFLNQMFSYNCLPDIITYNTLLGALCKEGMVDEAFQLLHLLTDTACS 449
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P ++Y +++ L R+G D+A+S M GI+ + + C + K EA+
Sbjct: 450 PGLISYNTVLDGLSRKGYMDKAMSLYSQMMENGIIPDDTTHRSIIWGFCRSNKFVEAVET 509
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ I K + Y L+ + + A + M + C N + ++ +
Sbjct: 510 LKGILKGGYEVNSSFYRILVHELCLNKKVDLAIQVLEMMLSSPCKSNETIYSTIINSIAS 569
Query: 243 HGLFEEAMKLFQEMAE 258
GL E+A +L Q++ E
Sbjct: 570 AGLKEQADELRQKLIE 585
>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Brachypodium distachyon]
Length = 718
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 146/327 (44%), Gaps = 29/327 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ +AG + ++ MR + + P +V +N V+
Sbjct: 188 PNVVTYNTLVAAFCRAGEVDAAERLVGVMR---------------EGGVRPSLVTFNTVV 232
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N + + E A + ++ ++G P +Y ++ G + F ++ QK +
Sbjct: 233 NGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVV 292
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + L++ + R G + AV+ V M RG+ + + L C G ++AL+
Sbjct: 293 PDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLA 352
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
M ++ + +P VV Y LI G + A + ++M+ P++VT + ++ Y +
Sbjct: 353 MKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCK 412
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + A +L NR+ KKG V+PD T+++++ E+R D ++++
Sbjct: 413 IGDTDSAFEL-----------NRKMLKKG-VVPDAITYSSLIRGLCEERRLGDACELFEK 460
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
ML GL + + +I + G V+
Sbjct: 461 MLQLGLQPDEFTYTTLIDGHCKEGNVQ 487
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 122/267 (45%), Gaps = 18/267 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + S+ + +AG+++ ++ MR ER L + + A++
Sbjct: 293 PDVVTFTSLIHAMCRAGNLERAVALVGQMR------------ERG---LRMNEFTFTALI 337
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ R + A ++++++ +PS Y +++ G+ + E +++ K
Sbjct: 338 DGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMK 397
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y +++ + G TD A M ++G+V A Y L R LC + +A
Sbjct: 398 PDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACEL 457
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+K+ ++ +P +YT LI GN+Q A + ++M K P++VT ++++ +
Sbjct: 458 FEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSK 517
Query: 243 HGLFEEAMK-LFQEMAEDSNHINREYD 268
+EA + LF+ ED N +Y+
Sbjct: 518 SARTKEAQRLLFKLYYEDPVPDNIKYE 544
>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
[Vitis vinifera]
Length = 691
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 129/307 (42%), Gaps = 28/307 (9%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S YP+ +Y + L + G E F++ M KK + G D+ Y+
Sbjct: 250 SVYPNIPSYNVMINGLCKCGKFDESFEIWHRM-----KKNERGQ----------DLYTYS 294
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
+++ +GA V +++ + G P Y ++ L G+ E ++ ++K
Sbjct: 295 TLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKE 354
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
++Y +L+ L+ K DEA+S E + + + Y L LC G +AL
Sbjct: 355 GCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKAL 414
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
+++ +Y+ +I G + A + +QM K+ C PN CN ++ +
Sbjct: 415 SILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGF 474
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ E+A++ F M KG P + T+NT+++ + +R+ + +
Sbjct: 475 VRASKLEDALRFFGNMVS-----------KG-CFPTVVTYNTLINGLSKAERFSEAYALV 522
Query: 301 KRMLHHG 307
K MLH G
Sbjct: 523 KEMLHKG 529
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 108/214 (50%), Gaps = 9/214 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P++ YN ++ R+KQ++ A +L + +QG P +YG ++ + G +
Sbjct: 145 LSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDAL 204
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER--RG--IVGSAALYYDL 167
+ F ++ ++ P+ Y +L++ +++G + ++A E ER +G + + Y +
Sbjct: 205 KLFDEMPERGVTPDVACYNILIDGFFKKG---DILNASEIWERLLKGPSVYPNIPSYNVM 261
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
LC GK +E+ ++ K + +Y+ LI SGN+ A ++ +M +N
Sbjct: 262 INGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGV 321
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
SP++V N M+ YL G EE ++L++ M ++
Sbjct: 322 SPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEG 355
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 112/251 (44%), Gaps = 14/251 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + R + D Y++++N R + + VL Q+ + G KP+ V+ +
Sbjct: 419 EAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRAS 478
Query: 107 KYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K FF V K P + Y L+N L + + EA + V++M +G + Y
Sbjct: 479 KLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYS 538
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
L LC K + AL + + KP V + +I SG +++A ++++MK
Sbjct: 539 LLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQR 598
Query: 226 -CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
C PNLVT N +++ + + FE A K++ +HI +Y + PDI ++N L
Sbjct: 599 KCVPNLVTHNTLMEGFYKVRDFERASKIW-------DHI-LQYGPQ----PDIISYNITL 646
Query: 285 DACAAEKRWDD 295
+ R D
Sbjct: 647 KGLCSCHRISD 657
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 117/272 (43%), Gaps = 16/272 (5%)
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQ-GQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
V+ A + + A + Q++ + G +P +Y ++ ++ K++ FF +
Sbjct: 83 TVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFET 142
Query: 121 SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ PN Y +L+ R+ + D+A + M +G Y L L G +
Sbjct: 143 MGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSD 202
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--PNLVTCNIMV 237
AL D++ + P V Y LI G+I NA+ I+ ++ S PN+ + N+M+
Sbjct: 203 ALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMI 262
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ G F+E+ +++ M KK D+YT++T++ D
Sbjct: 263 NGLCKCGKFDESFEIWHRM------------KKNERGQDLYTYSTLIHGLCGSGNLDGAT 310
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
VYK M +G+ + + M+ RAG++E
Sbjct: 311 RVYKEMAENGVSPDVVVYNTMLNGYLRAGRIE 342
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 115/261 (44%), Gaps = 22/261 (8%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKKFKTGTLERW--DPRLE------ 54
DT AY S+ L + G + E+ V+D M P + + +LE
Sbjct: 428 DTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFF 487
Query: 55 ---------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
P +V YN ++N + +++ A+ +++++ +G KP+ TY L+M +
Sbjct: 488 GNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQG 547
Query: 106 GKYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
K ++ + + ++K + P+ + ++++ L GK ++A+ +M++R V + +
Sbjct: 548 KKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTH 607
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MK 223
L E A D I + +P ++SY ++ I +A N +
Sbjct: 608 NTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVD 667
Query: 224 NFCSPNLVTCNIMVKAYLEHG 244
P +T NI+V+A L++G
Sbjct: 668 RGVLPTAITWNILVRAVLDNG 688
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/340 (18%), Positives = 126/340 (37%), Gaps = 65/340 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ +AG I+E ++ M K+ +T +V YN ++
Sbjct: 323 PDVVVYNTMLNGYLRAGRIEECLELWKVME---KEGCRT-------------VVSYNILI 366
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + A + + L ++ + TYG+++ + G N + +
Sbjct: 367 RGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGD 426
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ AY ++N L REG+ DE ++ M + G + + + A K E+AL
Sbjct: 427 LDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRF 486
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT---------- 232
+ P VV+Y LI + A + +M PN++T
Sbjct: 487 FGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQ 546
Query: 233 -----------C--------------NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
C NI++ G E+A++L+ EM
Sbjct: 547 GKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEM----------- 595
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
K+ +P++ T NT+++ + ++ ++ +L +G
Sbjct: 596 -KQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYG 634
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 37/193 (19%), Positives = 76/193 (39%), Gaps = 21/193 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSM----------------RSLPKKKFKTGTLE 47
+P V Y ++ L +A E + ++ M L + K L
Sbjct: 496 FPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALN 555
Query: 48 RWDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
W LE PD+ ++N +++ + E A + ++KQ+ P+ T+ +ME
Sbjct: 556 LWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFY 615
Query: 104 ACGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+ + + + Q P+ ++Y + + L + +AV + D RG++ +A
Sbjct: 616 KVRDFERASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAI 675
Query: 163 LYYDLARCLCSAG 175
+ L R + G
Sbjct: 676 TWNILVRAVLDNG 688
>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
Length = 650
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 129/307 (42%), Gaps = 28/307 (9%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S YP+ +Y + L + G E F++ M KK + G D+ Y+
Sbjct: 250 SVYPNIPSYNVMINGLCKCGKFDESFEIWHRM-----KKNERGQ----------DLYTYS 294
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
+++ +GA V +++ + G P Y ++ L G+ E ++ ++K
Sbjct: 295 TLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKE 354
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
++Y +L+ L+ K DEA+S E + + + Y L LC G +AL
Sbjct: 355 GCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKAL 414
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
+++ +Y+ +I G + A + +QM K+ C PN CN ++ +
Sbjct: 415 SILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGF 474
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ E+A++ F M KG P + T+NT+++ + +R+ + +
Sbjct: 475 VRASKLEDALRFFGNMVS-----------KG-CFPTVVTYNTLINGLSKAERFSEAYALV 522
Query: 301 KRMLHHG 307
K MLH G
Sbjct: 523 KEMLHKG 529
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 117/279 (41%), Gaps = 50/279 (17%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+P I YN++LNA + +W+ A + G P+ TY +++++ +++ E
Sbjct: 111 QPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKE 170
Query: 114 FFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ ++ + P+ +Y L+N+L + G +A+ ++M RG+
Sbjct: 171 LLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVT-------------- 216
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--PNL 230
P V Y LI G+I NA+ I+ ++ S PN+
Sbjct: 217 ---------------------PDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNI 255
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+ N+M+ + G F+E+ +++ M KK D+YT++T++
Sbjct: 256 PSYNVMINGLCKCGKFDESFEIWHRM------------KKNERGQDLYTYSTLIHGLCGS 303
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
D VYK M +G+ + + M+ RAG++E
Sbjct: 304 GNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIE 342
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 108/214 (50%), Gaps = 9/214 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P++ YN ++ R+KQ++ A +L + +QG P +YG ++ + G +
Sbjct: 145 LSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDAL 204
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER--RG--IVGSAALYYDL 167
+ F ++ ++ P+ Y +L++ +++G + ++A E ER +G + + Y +
Sbjct: 205 KLFDEMPERGVTPDVACYNILIDGFFKKG---DILNASEIWERLLKGPSVYPNIPSYNVM 261
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
LC GK +E+ ++ K + +Y+ LI SGN+ A ++ +M +N
Sbjct: 262 INGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGV 321
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
SP++V N M+ YL G EE ++L++ M ++
Sbjct: 322 SPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEG 355
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 115/264 (43%), Gaps = 17/264 (6%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D++ Y + L + G++ + +++ E + R + D Y++++N
Sbjct: 393 DSMTYGVLVHGLCKNGYLNKALSILE---------------EAENGRGDLDTFAYSSMIN 437
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYIP 124
R + + VL Q+ + G KP+ V+ + K FF V K P
Sbjct: 438 GLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFP 497
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ Y L+N L + + EA + V++M +G + Y L LC K + AL
Sbjct: 498 TVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLW 557
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
+ + KP V + +I SG +++A ++++MK C PNLVT N +++ + +
Sbjct: 558 CQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKV 617
Query: 244 GLFEEAMKLFQEMAEDSNHINREY 267
FE A K++ + + + N Y
Sbjct: 618 RDFERASKIWDHILQSWSSSNCYY 641
>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
Length = 806
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 107/244 (43%), Gaps = 14/244 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+PD+ +N +L+A + E F +L Q+K +G +P +YG +++
Sbjct: 533 FKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAK 592
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E+ ++ + PN Y L+ R G A+ AVE M+ GI + Y L +
Sbjct: 593 EYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWM 652
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
C AG EEA + + V+ YT +IQ G + A F +M++ SPN
Sbjct: 653 CHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNK 712
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T ++ AY + G EEA KLF EM VIPD T+ T++ C+
Sbjct: 713 LTYTTLMYAYSKSGNSEEASKLFDEMVGSG------------VIPDNITYGTLIARCSEV 760
Query: 291 KRWD 294
D
Sbjct: 761 NSLD 764
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 124/307 (40%), Gaps = 34/307 (11%)
Query: 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACV 68
A+ V GQ +E+FD + R++ ++ Y A++ A
Sbjct: 190 AFLEALVRAGQLDAAREVFDEMRESRNVALNEYS-----------------YTAMIKALC 232
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF-FRKVQKSYIPNAL 127
+ + + F +L +L + G +P+ TY ++M+ + G+ + R Q P+ +
Sbjct: 233 KAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVV 292
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
+ +L+N L R + E +++ME+ G+ + +Y +L C G C +AL D++
Sbjct: 293 TFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEM 352
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFE 247
KP V+Y + +A G ++ A I M + + + GLF
Sbjct: 353 VLKKMKPTAVTYNLIAKALCKEGEMERAERILEDM------------LSIGMTVHCGLFN 400
Query: 248 EAMK-LFQEM--AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
+ L Q E I E +G+ D M + C K + + + +K L
Sbjct: 401 TVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFK-TL 459
Query: 305 HHGLHFN 311
+ GL N
Sbjct: 460 NKGLGVN 466
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 21/223 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS--LPKKKFKTGTL---------------- 46
PD + ++ G ++E F ++D M++ L GT+
Sbjct: 535 PDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEY 594
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E D L+P++ +YNA++ R GA ++ +K G +P+ TYG +M M
Sbjct: 595 LTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCH 654
Query: 105 CGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G F + +++ + + Y +++ + GK EAV+ E+M RGI +
Sbjct: 655 AGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLT 714
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
Y L +G EEA D++ P ++Y LI C
Sbjct: 715 YTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARC 757
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 15/229 (6%)
Query: 83 LKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS--YIPNALAYKVLVNTLWREG 140
L +G PS T +E ++ G+ + E F ++++S N +Y ++ L + G
Sbjct: 176 LSSRGAPPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALCKAG 235
Query: 141 KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYT 200
K D + ++ R G+ + Y L LC +G+ EEA ++ + P VV++
Sbjct: 236 KVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFG 295
Query: 201 GLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
LI + +M+ SPN V N ++ + G +A++LF EM
Sbjct: 296 ILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLK 355
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+ P T+N + A E + E + + ML G+
Sbjct: 356 K------------MKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGM 392
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/305 (19%), Positives = 120/305 (39%), Gaps = 35/305 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
P+ V Y + + GH + + D M + K K G +ER +
Sbjct: 324 PNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERI 383
Query: 53 LEP----DIVVYNAVLNACV-----RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
LE + V+ + N V R ++ E + ++ +G +P+ M +
Sbjct: 384 LEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELC 443
Query: 104 ACGKYN-LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
GK+ V +F+ + K N L++ L EA ++ M +GI +
Sbjct: 444 KGGKHQEAVGIWFKTLNKGLGVNLATSNALIHGLCEGKYMKEATKVIQTMLNKGIELDSI 503
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y + R C K EEA+ + + KP + ++ L+ A + G ++ ++ +QM
Sbjct: 504 TYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQM 563
Query: 223 KN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
K P++V+ ++ + + +A + E+ + +GL P+++ +N
Sbjct: 564 KTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMD-----------RGLK-PNVFIYN 611
Query: 282 TMLDA 286
++
Sbjct: 612 ALIGG 616
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+++ Y +++ ++ K +EA+ DM RRG + L C+ GK EE +
Sbjct: 501 DSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLL 560
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAA-YIFNQMKNFCSPNLVTCNIMVKAYLEH 243
D++ +P +VSY +I + +I+ A Y+ M PN+ N ++ Y +
Sbjct: 561 DQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRN 620
Query: 244 GLFEEAMKLFQEMAEDS 260
G A+ + M +
Sbjct: 621 GDISGAIDAVETMKSNG 637
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 88/213 (41%), Gaps = 8/213 (3%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L ++ NA+++ K + A V+Q + +G + + TY +++ C K + +
Sbjct: 463 LGVNLATSNALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIR---GCCKDSKME 519
Query: 113 EFFR----KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
E + ++ + P+ + L++ GK +E ++ M+ G+ Y +
Sbjct: 520 EAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTII 579
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCS 227
C A +A + ++ KP V Y LI +G+I A MK N
Sbjct: 580 DGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQ 639
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
P VT ++ GL EEA +F + E++
Sbjct: 640 PTNVTYGSLMYWMCHAGLVEEAKTIFSQARENN 672
>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
Length = 738
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/316 (22%), Positives = 137/316 (43%), Gaps = 32/316 (10%)
Query: 17 LGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGA 76
L +AG + E ++D MR+ PD+V YN ++ ++ + A
Sbjct: 234 LCEAGRLPEAVRLVDGMRAYAV----------------PDVVTYNTLIRGLCKKSMPQEA 277
Query: 77 FWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNT 135
L+++ QG P TY +++ E + V K ++P+ + Y L+N
Sbjct: 278 MHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLING 337
Query: 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL 195
L EG + A+ + + +GI +Y L + LC G AL M+++ + P
Sbjct: 338 LCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPD 397
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQ--MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253
+ +Y +I GNI +A + N MK + P++ T N ++ Y + + A++L
Sbjct: 398 IQTYNIVINGLCKMGNISDATVVMNDAIMKGYL-PDVFTFNTLIDGYCKRLKLDSALQLV 456
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK 313
+ M E + PD T+N++L+ + +++ ++ M+ G H N
Sbjct: 457 ERMWEYG------------IAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPI 504
Query: 314 RHLRMILDASRAGKVE 329
+ +I + R+ K+E
Sbjct: 505 TYNILIENFCRSNKME 520
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 95/435 (21%), Positives = 171/435 (39%), Gaps = 45/435 (10%)
Query: 8 VAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNAC 67
VAY ++ L GH + + D M + P++ +N VL+A
Sbjct: 155 VAYCTVVCGLYAHGHTHDARQLFDQM---------------LHTHVFPNLAAFNKVLHAL 199
Query: 68 VRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNAL 127
+R A +L ++ Q+G + TY + + + G+ ++ +P+ +
Sbjct: 200 CKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVV 259
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
Y L+ L ++ EA+ + M +G + Y + C +EA +
Sbjct: 260 TYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDA 319
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLF 246
P V+Y LI G+++ A +FN+ + P++V N +VK GL
Sbjct: 320 VFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLI 379
Query: 247 EEAMKLFQEMAEDSNHIN-REYD-------KKGLV---------------IPDIYTFNTM 283
A+++ EMAE+ H + + Y+ K G + +PD++TFNT+
Sbjct: 380 LHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTL 439
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL----A 339
+D + D + +RM +G+ + + ++ +AGKV + T++ +
Sbjct: 440 IDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGC 499
Query: 340 RADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQ 399
+ IT LI E FC R + S + +S S N + F N G
Sbjct: 500 HPNPITYNILI-ENFC-RSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGA 557
Query: 400 DTLIQLLHEASSSLT 414
L Q L E S T
Sbjct: 558 YLLFQKLEEKGYSAT 572
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/321 (22%), Positives = 131/321 (40%), Gaps = 30/321 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ L G ++ ++ + E ++PDIVVYN+++
Sbjct: 326 PDQVTYCSLINGLCAEGDVERALELFN---------------EAQAKGIKPDIVVYNSLV 370
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEFFRKVQKSYI 123
+ A V+ ++ ++G P TY +V+ + G + + K Y+
Sbjct: 371 KGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYL 430
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + L++ + K D A+ VE M GI Y + LC AGK E
Sbjct: 431 PDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNET 490
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ P ++Y LI+ S ++ A+ + +M + P+ V+ N ++ +
Sbjct: 491 FQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCR 550
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+G E A LFQ++ E + TFNT++ A + + E ++
Sbjct: 551 NGDLEGAYLLFQKLEEKGYSATAD------------TFNTLIGAFSGKLNMHMAEKIFDE 598
Query: 303 MLHHGLHFNAKRHLRMILDAS 323
ML G H R+++D S
Sbjct: 599 MLSKG-HRADSYTYRVLIDGS 618
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 107/240 (44%), Gaps = 19/240 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PD+ + L + + A +L+ L +G A Y V+ + A G +
Sbjct: 119 VSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGHTHDAR 174
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F ++ +++ PN A+ +++ L + G EA + + +RG+ + Y R L
Sbjct: 175 QLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGL 234
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
C AG+ EA+ +D + + P VV+Y LI+ Q A + +M N C P+
Sbjct: 235 CEAGRLPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDD 293
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T N ++ Y + + +EA +L ++ KG V PD T+ ++++ AE
Sbjct: 294 FTYNTIIDGYCKISMVQEATELLKDAV-----------FKGFV-PDQVTYCSLINGLCAE 341
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/202 (19%), Positives = 84/202 (41%), Gaps = 3/202 (1%)
Query: 49 WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY 108
W+ + PD + YN+VLN + + Q++ +G P+ TY +++E K
Sbjct: 460 WEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKM 519
Query: 109 NLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ K+ Q+ P+A+++ L+ R G + A + +E +G +A + L
Sbjct: 520 EEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTL 579
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMKNFC 226
A D++ ++ +Y LI + N+ A ++ +K
Sbjct: 580 IGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGF 639
Query: 227 SPNLVTCNIMVKAY-LEHGLFE 247
P++ T ++ + + H +F+
Sbjct: 640 IPSMSTFGRVINSLTVNHRVFQ 661
>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
Length = 687
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 133/299 (44%), Gaps = 14/299 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P V+YN ++N + + EGAF Q+K + KP TY ++ + +
Sbjct: 367 LVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQ 426
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ ++Q + + P + L++ R G+ ++ + +M+ G+ + Y +
Sbjct: 427 DLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF 486
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C GK EA+ +D + P Y +I A ++ G A + +MK N SP++
Sbjct: 487 CKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSI 546
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N+++K EA ++ + SNH +IPD ++NT++ AC
Sbjct: 547 VTYNLLIKGLCNQSQISEAEEIINSL---SNH---------RLIPDAVSYNTLISACCYR 594
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPAL 349
D + +RM +G+ + + ++I AG++ +E ++ + + + + A+
Sbjct: 595 GNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAI 653
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 131/308 (42%), Gaps = 34/308 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ L +A I D++ +E D + P + +N ++
Sbjct: 404 PDHITYNALINGLCKAERITNAQDLL---------------MEMQDNGVNPTVETFNTLI 448
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+A R Q E F VL ++++ G KP+ +YG ++ GK + K +
Sbjct: 449 DAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVL 508
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PNA Y +++ G D+A VE M+ GI S Y L + LC+ + EA
Sbjct: 509 PNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEI 568
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV-TCNIMVKAYLE 242
++ + P VSY LI AC GNI A + +M + + V T + ++
Sbjct: 569 INSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGG 628
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA---EKRWDDL--E 297
G E L+Q+M +++ V+P N M++A + E + +DL E
Sbjct: 629 AGRLIEMEYLYQKMMQNN------------VVPSNAIHNIMVEAYSKYGNEIKAEDLRKE 676
Query: 298 LVYKRMLH 305
++ KR H
Sbjct: 677 MLQKRNNH 684
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/326 (21%), Positives = 128/326 (39%), Gaps = 29/326 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ +Y + + +AG + +V D M ER + P+ + YN ++
Sbjct: 194 PNAFSYNVVIAGMWRAGRGGDAVEVFDEMT------------ERA---VLPNHITYNTMI 238
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ ++ E F + Q+ G KP+A TY +++ + G+ ++ + +
Sbjct: 239 DGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMV 298
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y +L + L R G + +S + G+ L LC GK A
Sbjct: 299 PDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEV 358
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+ + P V Y LI +G ++ A F QMK+ P+ +T N ++ +
Sbjct: 359 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 418
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
A L EM ++ V P + TFNT++DA + + +V
Sbjct: 419 AERITNAQDLLMEMQDNG------------VNPTVETFNTLIDAYGRTGQLEKCFIVLSE 466
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV 328
M +GL N + ++ + GK+
Sbjct: 467 MQENGLKPNVVSYGSIVNAFCKNGKI 492
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/301 (19%), Positives = 125/301 (41%), Gaps = 26/301 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNLVYE 113
PD +N + ACV A +L+++ + G P+A +Y +V+ M G+ E
Sbjct: 158 PDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVE 217
Query: 114 FFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F ++ +++ +PN + Y +++ + G + S + M G+ +A Y L LC
Sbjct: 218 VFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLC 277
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLV 231
AG+ E +D++ P +Y+ L +G+ + +F + +KN +
Sbjct: 278 RAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDY 337
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKG------------ 271
TC+I++ + G A ++ Q + N + Y + G
Sbjct: 338 TCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQM 397
Query: 272 ---LVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+ PD T+N +++ +R + + + M +G++ + +I R G++
Sbjct: 398 KSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQL 457
Query: 329 E 329
E
Sbjct: 458 E 458
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/304 (21%), Positives = 123/304 (40%), Gaps = 32/304 (10%)
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+A VRR AF +L G +P + ++ +A G R++ + P
Sbjct: 141 HADVRR-----AFGIL---ASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAP 192
Query: 125 --NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
NA +Y V++ +WR G+ +AV ++M R ++ + Y + G E
Sbjct: 193 PPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFS 252
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYL 241
D++ KP ++Y L+ +G + + + ++M + P+ T +I+
Sbjct: 253 LRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLS 312
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+G + + LF + K G+ I D YT + +L+ + + E V +
Sbjct: 313 RNGDSKAMLSLFGKSL-----------KNGVTIGD-YTCSILLNGLCKDGKVSIAEEVLQ 360
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA----RADRITPPALIK-----E 352
+++ GL + +I + G++E T+ + + D IT ALI E
Sbjct: 361 SLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAE 420
Query: 353 RFCN 356
R N
Sbjct: 421 RITN 424
>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 482
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 130/270 (48%), Gaps = 22/270 (8%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
+ + D V YN ++N K+ A +L+++ ++G P+ TTY +++ G+ N
Sbjct: 191 KFKADCVSYNIIVNGWCLIKRTPKALEMLKEMVERGLTPNLTTYNIMLNGYFRAGQTNEA 250
Query: 112 YEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ FF +++K + + Y +++ L G+ A + M + G++ S A + L +
Sbjct: 251 WGFFLEMKKRKCDIDVVTYTSVIHGLGVVGEIKRARNVFNQMVKDGVLPSVATFNALIQI 310
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
LC E A++ +++ K P ++Y +I+ G +Q A + +M+ + C PN
Sbjct: 311 LCKKDSVENAILIFEEMVKRGYVPNSITYNLVIRGLCHVGEMQRAMELMERMEDDDCEPN 370
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+ T NI+++ + + G E+ + LFQ+M G +P++ T+N ++++
Sbjct: 371 VQTYNILIRYFCDAGEIEKGLDLFQKMGN------------GDCLPNLDTYNILINSMFV 418
Query: 290 EKRWDDL--------ELVYKRMLHHGLHFN 311
K D+L E+V + L L FN
Sbjct: 419 RKNSDNLLVAGKLLVEMVDRGFLPRKLTFN 448
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 110/239 (46%), Gaps = 17/239 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P++ YN +LN R Q A+ ++K++ TY V+ + G+
Sbjct: 227 LTPNLTTYNIMLNGYFRAGQTNEAWGFFLEMKKRKCDIDVVTYTSVIHGLGVVGEIKRAR 286
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F + V+ +P+ + L+ L ++ + A+ E+M +RG V ++ Y + R L
Sbjct: 287 NVFNQMVKDGVLPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITYNLVIRGL 346
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C G+ + A+ M+++ +P V +Y LI+ D+G I+ +F +M N C PNL
Sbjct: 347 CHVGEMQRAMELMERMEDDDCEPNVQTYNILIRYFCDAGEIEKGLDLFQKMGNGDCLPNL 406
Query: 231 VTCNIMVKAYLEHGLFEE---AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
T NI++ + + A KL EM ++R + +P TFN +LD
Sbjct: 407 DTYNILINSMFVRKNSDNLLVAGKLLVEM------VDRGF------LPRKLTFNRVLDG 453
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 120/260 (46%), Gaps = 23/260 (8%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNT 135
A V + + G +++ +++V+ + + Y F+ ++ + + ++Y ++VN
Sbjct: 146 AVTVFMSMHEYGCFQDLSSFNTILDVLCKSKRVEMAYNLFKALKGKFKADCVSYNIIVNG 205
Query: 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA---LMQMDK-ICKVA 191
+T +A+ +++M RG+ + Y + AG+ EA ++M K C +
Sbjct: 206 WCLIKRTPKALEMLKEMVERGLTPNLTTYNIMLNGYFRAGQTNEAWGFFLEMKKRKCDID 265
Query: 192 NKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAM 250
VV+YT +I G I+ A +FNQM K+ P++ T N +++ + E A+
Sbjct: 266 ----VVTYTSVIHGLGVVGEIKRARNVFNQMVKDGVLPSVATFNALIQILCKKDSVENAI 321
Query: 251 KLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKRMLHHGLH 309
+F+EM K+G V P+ T+N ++ C + +EL+ +RM
Sbjct: 322 LIFEEMV-----------KRGYV-PNSITYNLVIRGLCHVGEMQRAMELM-ERMEDDDCE 368
Query: 310 FNAKRHLRMILDASRAGKVE 329
N + + +I AG++E
Sbjct: 369 PNVQTYNILIRYFCDAGEIE 388
>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
Length = 722
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 123/259 (47%), Gaps = 17/259 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T+ Y I L QA ++ ++++M+ +G PD + NA+L
Sbjct: 234 PNTMIYTIILSGLCQAKRTDDVHRLLNTMKV-------SGCC--------PDSITCNALL 278
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + Q + AF +LQ +++G Y +++ + +Y+ V E+ RK+ K+ I
Sbjct: 279 DGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIE 338
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y +L+ G D A++ + DM +RG+ Y L + C G ++A
Sbjct: 339 PDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSL 398
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+I K P +YT LI +G + A IFNQM+N CSP+++T N ++ +
Sbjct: 399 QLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCK 458
Query: 243 HGLFEEAMKLFQEMAEDSN 261
G EEA LF +M N
Sbjct: 459 AGELEEARHLFYKMEIGKN 477
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 117/273 (42%), Gaps = 49/273 (17%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
++ ++ A + E A ++K G KP TY ++ VM+ + L + ++
Sbjct: 133 TFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQM 192
Query: 119 QK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
K +Y PN + +L+N L + GKTD+A+ ++M ++GI + +Y + LC A +
Sbjct: 193 LKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRT 252
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIM 236
++ + N MK + C P+ +TCN +
Sbjct: 253 DD-----------------------------------VHRLLNTMKVSGCCPDSITCNAL 277
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ + + G +EA L Q ++K+G V+ I +++++D KR+D++
Sbjct: 278 LDGFCKLGQIDEAFALLQ-----------LFEKEGYVL-GIKGYSSLIDGLFRAKRYDEV 325
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ ++M G+ + + +I G V+
Sbjct: 326 QEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVD 358
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/233 (20%), Positives = 103/233 (44%), Gaps = 14/233 (6%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD+ YN++L+ V+++ + A V Q+ + P+ T+ +++ + GK + +
Sbjct: 163 KPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALK 222
Query: 114 FFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F ++ QK PN + Y ++++ L + +TD+ + M+ G + L C
Sbjct: 223 MFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFC 282
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
G+ +EA + K + Y+ LI + +M K P++V
Sbjct: 283 KLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVV 342
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
I+++ + E G+ + A+ + +M + +GL PD Y +N ++
Sbjct: 343 LYTILIRGFCEVGMVDYALNMLNDMTQ-----------RGLS-PDTYCYNALI 383
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 17/208 (8%)
Query: 31 DSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKP 90
D ++ +K FK G +EPD+V+Y ++ + A +L + Q+G P
Sbjct: 323 DEVQEWCRKMFKAG--------IEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSP 374
Query: 91 SATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAV 149
Y +++ G + ++ K+ P + Y +L+ + R G DEA
Sbjct: 375 DTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIF 434
Query: 150 EDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS 209
ME G S + L LC AG+ EEA K+ N L + + +D+
Sbjct: 435 NQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDT 494
Query: 210 GN-------IQNAAYIFNQM-KNFCSPN 229
N ++A + +QM KN C+P+
Sbjct: 495 ANGFHRVDREEDAFRVLDQMVKNGCTPS 522
>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
Length = 611
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 127/284 (44%), Gaps = 28/284 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y S+ L G + E ++D M S L+P+++ YNA++
Sbjct: 336 PTVVTYNSLVNGLCNEGKLNEAKVLLDEMLS---------------SNLKPNVITYNALI 380
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV--QKSY 122
N ++K E A + + +QG P+ T+ ++ GK + +KV +K +
Sbjct: 381 NGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAF-LLQKVMLEKGF 439
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+PNA Y L+ REGK +E + + +M+ RG+ Y L C + ++A
Sbjct: 440 LPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAAR 499
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+D++ KP ++Y L+ GN++ A + QM K N+VT N++++ Y
Sbjct: 500 LIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYC 559
Query: 242 EHGLFEEAMKLFQEMAEDSNHINR--------EYDKKGLVIPDI 277
G E+A L EM E NR E +KG +PDI
Sbjct: 560 RKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEEMMEKGF-LPDI 602
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 123/262 (46%), Gaps = 17/262 (6%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
++ P+++ +N V+N + + A V+ +K G P+ TY +++ G+ +
Sbjct: 225 KISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKM 284
Query: 112 YE----FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
Y+ V+ PN++ + VL++ ++ A+ E+M+ +G+ + Y L
Sbjct: 285 YKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSL 344
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
LC+ GK EA + +D++ KP V++Y LI ++ A +F+ + K
Sbjct: 345 VNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGL 404
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+PN++T N ++ Y + G EEA L + M E KG +P+ T+N ++
Sbjct: 405 TPNVITFNTLLHGYCKFGKMEEAFLLQKVMLE-----------KGF-LPNASTYNCLIVG 452
Query: 287 CAAEKRWDDLELVYKRMLHHGL 308
E + ++++ + M G+
Sbjct: 453 FCREGKMEEVKNLLNEMQCRGV 474
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/350 (21%), Positives = 146/350 (41%), Gaps = 37/350 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTL------ 46
P+ + + ++ L + G + + DV+D M+ +L K G +
Sbjct: 228 PNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKA 287
Query: 47 -----ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
E + ++ P+ V +N +++ + + A V ++++ QG KP+ TY ++
Sbjct: 288 DAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNG 347
Query: 102 MLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ GK N ++ S + PN + Y L+N ++ +EA +++ ++G+ +
Sbjct: 348 LCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPN 407
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
+ L C GK EEA + + + P +Y LI G ++ + N
Sbjct: 408 VITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLN 467
Query: 221 QMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
+M+ + VT NI++ A+ E ++A +L EM + KGL P T
Sbjct: 468 EMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLD-----------KGLK-PSHLT 515
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+N +L+ E + K+M G N + +I R GK+E
Sbjct: 516 YNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLE 565
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 122/294 (41%), Gaps = 58/294 (19%)
Query: 113 EFFRK--VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
EF K +++ PN + + ++N L + GK ++A V+DM+ G + Y L
Sbjct: 215 EFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDG 274
Query: 171 LCSAG------KCEEALMQM----------------DKICKVAN---------------- 192
C G K + L +M D CK N
Sbjct: 275 YCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGL 334
Query: 193 KPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMK 251
KP VV+Y L+ + G + A + ++M + PN++T N ++ Y + L EEA +
Sbjct: 335 KPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARE 394
Query: 252 LFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
LF + K+GL P++ TFNT+L + ++ L+ K ML G N
Sbjct: 395 LFDNIG-----------KQGLT-PNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPN 442
Query: 312 AKRHLRMILDASRAGKVE----LLEITWEHLARADRITPPALIKERFCNRLENK 361
A + +I+ R GK+E LL +AD +T LI +C + E K
Sbjct: 443 ASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISA-WCEKKEPK 495
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 16/203 (7%)
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F R Y + L+ L++ L +E + ++M RR I + + + LC
Sbjct: 183 FKRAGDYRYKLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCK 242
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQ---NAAYIFNQM-KNFCSPN 229
GK +A +D + P VV+Y LI G + A I +M +N SPN
Sbjct: 243 VGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPN 302
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
VT N+++ + + A+K+F+EM +GL P + T+N++++
Sbjct: 303 SVTFNVLIDGFCKDENLSAALKVFEEM-----------QSQGLK-PTVVTYNSLVNGLCN 350
Query: 290 EKRWDDLELVYKRMLHHGLHFNA 312
E + ++ +++ ML L N
Sbjct: 351 EGKLNEAKVLLDEMLSSNLKPNV 373
>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 129/300 (43%), Gaps = 27/300 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P++V+Y +++ C + A + ++ + G P+ TY ++M G +
Sbjct: 189 LSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGF 248
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ + +++S I PNA AY L++ G D+A +M +GI Y L L
Sbjct: 249 QMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGL 308
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C K EA+ + K+ KV P +V+Y LI D G + A +FNQ+K+ SP L
Sbjct: 309 CRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTL 368
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEM------------------------AEDSNHINRE 266
VT N ++ Y + A+ L +EM E + ++
Sbjct: 369 VTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSL 428
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+K GLV PD+YT++ ++ + ++K + L N+ + MI + G
Sbjct: 429 MEKSGLV-PDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEG 487
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/306 (21%), Positives = 125/306 (40%), Gaps = 29/306 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ AY + G + + F V MR +K G ++ YN ++
Sbjct: 261 PNAYAYNCLISEYCNGGMVDKAFKVFAEMR---EKGIACG------------VMTYNILI 305
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
R K++ A ++ ++ + G P+ TY +++ GK + F +++ S +
Sbjct: 306 GGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLS 365
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y L+ + A+ V++ME R I S Y L E+A
Sbjct: 366 PTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEM 425
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ K P V +Y+ LI GN++ A+ +F + PN V N M+ Y +
Sbjct: 426 HSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCK 485
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G A++L EM ++P++ +F + + +++W + EL+ +
Sbjct: 486 EGSSYRALRLLNEMVHSG------------MVPNVASFCSTIGLLCRDEKWKEAELLLGQ 533
Query: 303 MLHHGL 308
M++ GL
Sbjct: 534 MINSGL 539
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/251 (17%), Positives = 95/251 (37%), Gaps = 48/251 (19%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
+Y+ ++NA V + A L + +G P + T+ +M +++ ++ + F ++
Sbjct: 91 LYDTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWWIFNEL 150
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ + +A ++ +++ G + + +E G+
Sbjct: 151 KSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGL--------------------- 189
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
P VV YT LI C GN+ A +F +M PN T ++++
Sbjct: 190 --------------SPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLM 235
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ + GL E ++++ M K+ ++P+ Y +N ++ D
Sbjct: 236 NGFFKQGLQREGFQMYENM------------KRSGIVPNAYAYNCLISEYCNGGMVDKAF 283
Query: 298 LVYKRMLHHGL 308
V+ M G+
Sbjct: 284 KVFAEMREKGI 294
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 82/196 (41%), Gaps = 16/196 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y ++ + ++ D++ M ER + P V Y ++
Sbjct: 366 PTLVTYNTLIAGYSKVENLAGALDLVKEME------------ERC---IAPSKVTYTILI 410
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+A R E A + +++ G P TY +++ + G + F+ + + ++
Sbjct: 411 DAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQ 470
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN++ Y +++ +EG + A+ + +M G+V + A + LC K +EA +
Sbjct: 471 PNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAELL 530
Query: 184 MDKICKVANKPLVVSY 199
+ ++ KP V Y
Sbjct: 531 LGQMINSGLKPSVSLY 546
>gi|255660966|gb|ACU25652.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 376
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 139/286 (48%), Gaps = 15/286 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + ++ PD VVYNA+LN R + + F + + + +G + S +++ ++M + G
Sbjct: 15 EIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNG 73
Query: 107 KYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K + V + +++S ++ +++ Y +LV+ + G D+++ +E E++G V A Y
Sbjct: 74 KVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYS 133
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+ LC + AL ++ + K KP V Y LI + ++A +F +M
Sbjct: 134 AMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREMGTM 193
Query: 226 -CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
CSP ++T N ++ ++ +F EA L +E+ + KGL P + T++ ++
Sbjct: 194 HCSPTIITYNTLINGLCKNEMFGEAYNLVKELLD-----------KGLD-PGVITYSMLM 241
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ + + ++ +++ G + + H +I GK++L
Sbjct: 242 KGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCSVGKMQL 287
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/292 (21%), Positives = 121/292 (41%), Gaps = 29/292 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D++ Y + + G+I + S+ L + K G L D Y+A++N
Sbjct: 93 DSITYGILVHGFCKNGYIDK------SLHVLEMAEQKGGVL---------DAFAYSAMIN 137
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ + A VL + + G KP+ Y ++ + K+ FR++ + P
Sbjct: 138 GLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREMGTMHCSP 197
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ Y L+N L + EA + V+++ +G+ Y L + LC K E AL
Sbjct: 198 TIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLW 257
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
+++ KP V + LI G +Q A ++ M + C+PNLV+ N +++ + +
Sbjct: 258 NQVISKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKD 317
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
G A+ ++ + + + PDI ++N L + R D
Sbjct: 318 GDIRNALMIWARILRNG------------LEPDIISYNITLKGLCSCNRISD 357
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/137 (18%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D L+P ++ Y+ ++ + E A + Q+ +G KP + +++ + + G
Sbjct: 224 ELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCSVG 283
Query: 107 KYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K L + + + PN +++ L+ +++G A+ + R G+ Y
Sbjct: 284 KMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALMIWARILRNGLEPDIISYN 343
Query: 166 DLARCLCSAGKCEEALM 182
+ LCS + +A++
Sbjct: 344 ITLKGLCSCNRISDAIL 360
>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
Length = 724
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/387 (22%), Positives = 164/387 (42%), Gaps = 60/387 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y ++ +L + G +KE ++ S P + VYNA++
Sbjct: 214 PDEVSYTTLISSLCKLGKVKEARELAMS--------------------FTPSVPVYNALI 253
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N + +E AF +L ++ +G P+ +Y ++ + G L K+ +
Sbjct: 254 NGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCS 313
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL-- 181
PN + L+ + +G + EA+ + M R G+V + Y L LCS +A+
Sbjct: 314 PNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSV 373
Query: 182 ---MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMV 237
M+++ C P V +Y+ LI +G++ A+ ++N M + C PN+V MV
Sbjct: 374 FNQMEINGCC-----PNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMV 428
Query: 238 KAYLEHGLFEEAMKLFQEMAEDS---NHINREYDKKGL--------------------VI 274
+ +F +A L + M ++ N + KGL
Sbjct: 429 DVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCF 488
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEI 333
P+ T+N +LD+ ++R+ + + K M H G+ N + +I AG + E LE+
Sbjct: 489 PNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALEL 548
Query: 334 TWEHLARA---DRITPPALIKERFCNR 357
+ + R D IT +I + +C +
Sbjct: 549 LGKMVVRGTKPDAITVNIVI-DAYCKQ 574
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/316 (22%), Positives = 145/316 (45%), Gaps = 21/316 (6%)
Query: 24 KELF-DVIDSMRSLPKKKFKTGTLERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQ 81
++LF VI S R + T R D R++P + +YN +L+A + +++ +
Sbjct: 111 EDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYS 170
Query: 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREG 140
+K+ G +P+ TY ++++ + + + ++ ++ K P+ ++Y L+++L + G
Sbjct: 171 NMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLG 230
Query: 141 KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYT 200
K EA S +Y L +C EEA +D++ P V+SYT
Sbjct: 231 KVKEARELA-----MSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYT 285
Query: 201 GLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
+I A D+GN++ + + +M CSPNL T ++K + G EA+ + M +
Sbjct: 286 TIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIRE 345
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
V+P++ +N ++ +++ D V+ +M +G N + + +I
Sbjct: 346 G------------VVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALI 393
Query: 320 LDASRAGKVELLEITW 335
++AG ++ W
Sbjct: 394 DGYAKAGDLDGASEVW 409
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 75/343 (21%), Positives = 134/343 (39%), Gaps = 58/343 (16%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK----- 107
+EP++ YN +L A + + +GA +L ++ +G P +Y ++ + GK
Sbjct: 177 MEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEAR 236
Query: 108 ------------YNLV-------YEFFRKVQ-------KSYIPNALAYKVLVNTLWREGK 141
YN + Y F Q K PN ++Y ++N L G
Sbjct: 237 ELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGN 296
Query: 142 TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
+ +++ + M RG + + L + G EAL D++ + P VV+Y
Sbjct: 297 VELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNA 356
Query: 202 LIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
L+ ++ +A +FNQM+ N C PN+ T + ++ Y + G + A +++ M
Sbjct: 357 LMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHG 416
Query: 261 NHI--------------NREYDKKGLVI---------PDIYTFNTMLDACAAEKRWDDLE 297
H N +++ +I P+ TFNT + R D
Sbjct: 417 CHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAI 476
Query: 298 LVYKRMLHHGLHFNAKRH---LRMILDASRAGKVELLEITWEH 337
V+ +M + G N + L +L R G+ L EH
Sbjct: 477 KVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEH 519
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/392 (20%), Positives = 156/392 (39%), Gaps = 88/392 (22%)
Query: 44 GTLERWDPRL----EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM 99
G E W+ + P++V Y +++ R + A+ +++ ++ + P+ T+ +
Sbjct: 404 GASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFI 463
Query: 100 EVMLACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ + G+ + + F ++ S PN Y L+++L ++ + EA V+DME RGI
Sbjct: 464 KGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIE 523
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
+ Y + C AG EAL + K+ K
Sbjct: 524 LNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTK------------------------- 558
Query: 219 FNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
P+ +T NI++ AY + G A++L ++ H PDI
Sbjct: 559 ---------PDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWH------------PDII 597
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK------RHLRMILDASRAGKVELLE 332
+ +++ ++ + +RML G+ N RHL + +G V+ L+
Sbjct: 598 AYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL--FSNMGHSGAVQFLD 655
Query: 333 ITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVS--GSPE----FSRNAW 386
+ ++++ +F + K+ G + H VS GSP ++N +
Sbjct: 656 AS-------------SIMQPKFVVLIITKEAGGQL-----HSVSSMGSPVERAICAKNQF 697
Query: 387 LKFFKENSQHFGQDTLIQLLHEASSSLTTRNG 418
L F N +H LI + H+A+ ++T G
Sbjct: 698 L--FPLNLKH---HLLIIICHDANIQISTSCG 724
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 111/254 (43%), Gaps = 22/254 (8%)
Query: 110 LVYEFFRKV--QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
L E+F+ + KS+ L Y++++ L E + D ++ M+ GI S L+ +
Sbjct: 58 LALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISV 117
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
AG E+AL ++ KP V Y ++ A LD Q I++ M K+
Sbjct: 118 IGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGM 177
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE---DSNHIN-----REYDKKGLV----- 273
PN+ T NI++KA ++ + A KL EM+ D + ++ K G V
Sbjct: 178 EPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARE 237
Query: 274 -----IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
P + +N +++ E +++ + M++ G+ N + +I S AG V
Sbjct: 238 LAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNV 297
Query: 329 EL-LEITWEHLARA 341
EL L + + AR
Sbjct: 298 ELSLAVLAKMFARG 311
>gi|449455956|ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Cucumis sativus]
gi|449492939|ref|XP_004159147.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Cucumis sativus]
Length = 535
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 145/316 (45%), Gaps = 17/316 (5%)
Query: 21 GHIKELFDVIDSMRSLPKKKFKTGTLERWDPR----LEPDIVVYNAVLNACVRRKQWEGA 76
G + +F +++L KK G + +D + P++V Y +L V R GA
Sbjct: 187 GVVPNVFTCNILIKALCKKNDVEGARKVFDEMPSMGIVPNVVTYTTILGGYVSRGDMIGA 246
Query: 77 FWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNT 135
V +L G P ATTY ++M+ + G++ + +++++ + PN + Y V++
Sbjct: 247 KRVFGELFDHGWLPDATTYTILMDGYVKQGRFTDAVKVMDEMEENGVEPNDITYGVIILG 306
Query: 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL 195
+E K+ EA++ + DM + + ++AL + LC G+ +EA +K+ K P
Sbjct: 307 YCKERKSGEALNLLNDMLEKKYIPNSALCCKVIDVLCGEGRVKEACKMWEKLLKKNCTPD 366
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
+ LI GNI A +FN+ + +L+T N ++ E G EA +L+ +
Sbjct: 367 NAITSTLIHWLCKEGNIWEARKLFNEFERGTISSLLTYNTLIAGMCEMGELCEAARLWDD 426
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
M E KG V P+ +T+N ++ + ++ V + ML G N +
Sbjct: 427 MLE-----------KGCV-PNEFTYNMLIKGFLKVGKAKEVIKVVEEMLDKGCLLNESTY 474
Query: 316 LRMILDASRAGKVELL 331
L ++ + GK E L
Sbjct: 475 LILVEGLLKLGKREEL 490
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/180 (19%), Positives = 77/180 (42%), Gaps = 3/180 (1%)
Query: 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR--KVQKSYIPNALAYKVLVNTLWRE 139
+++ G + S + ++ ++ +++ V+ F+ K + +PN +L+ L ++
Sbjct: 146 RIQTFGVRRSVRSLNTLLNALVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKALCKK 205
Query: 140 GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSY 199
+ A ++M GIV + Y + S G A ++ P +Y
Sbjct: 206 NDVEGARKVFDEMPSMGIVPNVVTYTTILGGYVSRGDMIGAKRVFGELFDHGWLPDATTY 265
Query: 200 TGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
T L+ + G +A + ++M +N PN +T +++ Y + EA+ L +M E
Sbjct: 266 TILMDGYVKQGRFTDAVKVMDEMEENGVEPNDITYGVIILGYCKERKSGEALNLLNDMLE 325
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 4/137 (2%)
Query: 49 WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLK---QQGQKPSATTYGLVMEVMLAC 105
W+ L+ + NA+ + + EG W ++L ++G S TY ++ M
Sbjct: 355 WEKLLKKNCTPDNAITSTLIHWLCKEGNIWEARKLFNEFERGTISSLLTYNTLIAGMCEM 414
Query: 106 GKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G+ + ++K +PN Y +L+ + GK E + VE+M +G + + + Y
Sbjct: 415 GELCEAARLWDDMLEKGCVPNEFTYNMLIKGFLKVGKAKEVIKVVEEMLDKGCLLNESTY 474
Query: 165 YDLARCLCSAGKCEEAL 181
L L GK EE L
Sbjct: 475 LILVEGLLKLGKREELL 491
>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 584
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 133/308 (43%), Gaps = 31/308 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ Y + L + G K+ F V D MR ER + +IV YN +
Sbjct: 265 FPNLHTYNCVMNQLCKDGRTKDAFKVFDEMR------------ERG---VSCNIVTYNTL 309
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSY 122
+ R + A V+ Q+K G P+ TY +++ K R ++ +
Sbjct: 310 IGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGL 369
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ + Y +LV+ ++G T A V++ME RGI S Y L + E+A+
Sbjct: 370 SPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQ 429
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAY 240
+ ++ P V +Y+ LI G + A+ +F M K F PN V N MV Y
Sbjct: 430 LRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKF-EPNEVIYNTMVLGY 488
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ G A++LF+EM E + P++ ++ M++ E++ + E +
Sbjct: 489 CKEGSSYRALRLFREMEEKE------------LPPNVASYRYMIEVLCKERKSKEAEGLV 536
Query: 301 KRMLHHGL 308
++M+ G+
Sbjct: 537 EKMIDSGI 544
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/334 (21%), Positives = 144/334 (43%), Gaps = 42/334 (12%)
Query: 19 QAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFW 78
+AG I++ FD++ +R P++V+Y +++ C ++ + E A
Sbjct: 175 EAGEIEKSFDLLVELREFG---------------FSPNVVIYTTLIDGCCKKGEIEKAKD 219
Query: 79 VLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLW 137
+ ++ + G + TY +++ + G +E + K+Q+ + PN Y ++N L
Sbjct: 220 LFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLC 279
Query: 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV 197
++G+T +A ++M RG+ + Y L LC K EA MD++ P ++
Sbjct: 280 KDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLI 339
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+Y LI + A + +K+ SP+LVT NI+V + + G A K+ +EM
Sbjct: 340 TYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEM 399
Query: 257 A------------------------EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
E + + ++ GL PD++T++ ++ + R
Sbjct: 400 EERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLT-PDVHTYSVLIHGFCIKGR 458
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
++ ++K M+ N + M+L + G
Sbjct: 459 MNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEG 492
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/289 (18%), Positives = 115/289 (39%), Gaps = 49/289 (16%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
+Y ++NA V+ + + + + ++ +G P + + ++ ++ +N + FF
Sbjct: 96 LYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFF--- 152
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ + V D+ GIV + C AG+ E
Sbjct: 153 -----------------------NESKIKVVLDVYSFGIV---------IKGCCEAGEIE 180
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
++ + ++ + P VV YT LI C G I+ A +F +M F N T +++
Sbjct: 181 KSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLI 240
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
++G+ ++ +++++M E V P+++T+N +++ + R D
Sbjct: 241 HGLFKNGIKKQGFEMYEKMQEHG------------VFPNLHTYNCVMNQLCKDGRTKDAF 288
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
V+ M G+ N + +I R K + + ++D I P
Sbjct: 289 KVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQM-KSDGINP 336
>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Vitis vinifera]
Length = 666
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/387 (22%), Positives = 164/387 (42%), Gaps = 60/387 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y ++ +L + G +KE ++ S P + VYNA++
Sbjct: 214 PDEVSYTTLISSLCKLGKVKEARELAMS--------------------FTPSVPVYNALI 253
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N + +E AF +L ++ +G P+ +Y ++ + G L K+ +
Sbjct: 254 NGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCS 313
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL-- 181
PN + L+ + +G + EA+ + M R G+V + Y L LCS +A+
Sbjct: 314 PNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSV 373
Query: 182 ---MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMV 237
M+++ C P V +Y+ LI +G++ A+ ++N M + C PN+V MV
Sbjct: 374 FNQMEINGCC-----PNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMV 428
Query: 238 KAYLEHGLFEEAMKLFQEMAEDS---NHINREYDKKGL--------------------VI 274
+ +F +A L + M ++ N + KGL
Sbjct: 429 DVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCF 488
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEI 333
P+ T+N +LD+ ++R+ + + K M H G+ N + +I AG + E LE+
Sbjct: 489 PNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALEL 548
Query: 334 TWEHLARA---DRITPPALIKERFCNR 357
+ + R D IT +I + +C +
Sbjct: 549 LGKMVVRGTKPDAITVNIVI-DAYCKQ 574
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/316 (22%), Positives = 145/316 (45%), Gaps = 21/316 (6%)
Query: 24 KELF-DVIDSMRSLPKKKFKTGTLERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQ 81
++LF VI S R + T R D R++P + +YN +L+A + +++ +
Sbjct: 111 EDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYS 170
Query: 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREG 140
+K+ G +P+ TY ++++ + + + ++ ++ K P+ ++Y L+++L + G
Sbjct: 171 NMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLG 230
Query: 141 KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYT 200
K EA S +Y L +C EEA +D++ P V+SYT
Sbjct: 231 KVKEARELA-----MSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYT 285
Query: 201 GLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
+I A D+GN++ + + +M CSPNL T ++K + G EA+ + M +
Sbjct: 286 TIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIRE 345
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
V+P++ +N ++ +++ D V+ +M +G N + + +I
Sbjct: 346 G------------VVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALI 393
Query: 320 LDASRAGKVELLEITW 335
++AG ++ W
Sbjct: 394 DGYAKAGDLDGASEVW 409
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 75/343 (21%), Positives = 134/343 (39%), Gaps = 58/343 (16%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK----- 107
+EP++ YN +L A + + +GA +L ++ +G P +Y ++ + GK
Sbjct: 177 MEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEAR 236
Query: 108 ------------YNLV-------YEFFRKVQ-------KSYIPNALAYKVLVNTLWREGK 141
YN + Y F Q K PN ++Y ++N L G
Sbjct: 237 ELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGN 296
Query: 142 TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
+ +++ + M RG + + L + G EAL D++ + P VV+Y
Sbjct: 297 VELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNA 356
Query: 202 LIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
L+ ++ +A +FNQM+ N C PN+ T + ++ Y + G + A +++ M
Sbjct: 357 LMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHG 416
Query: 261 NHI--------------NREYDKKGLVI---------PDIYTFNTMLDACAAEKRWDDLE 297
H N +++ +I P+ TFNT + R D
Sbjct: 417 CHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAI 476
Query: 298 LVYKRMLHHGLHFNAKRH---LRMILDASRAGKVELLEITWEH 337
V+ +M + G N + L +L R G+ L EH
Sbjct: 477 KVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEH 519
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/247 (20%), Positives = 108/247 (43%), Gaps = 18/247 (7%)
Query: 44 GTLERWDPRL----EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM 99
G E W+ + P++V Y +++ R + A+ +++ ++ + P+ T+ +
Sbjct: 404 GASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFI 463
Query: 100 EVMLACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ + G+ + + F ++ S PN Y L+++L ++ + EA V+DME RGI
Sbjct: 464 KGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIE 523
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
+ Y + C AG EAL + K+ KP ++ +I A G + A +
Sbjct: 524 LNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQL 583
Query: 219 FNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI 277
+++ P+++ ++ H EEA+ + M + + P++
Sbjct: 584 MDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEG------------ISPNV 631
Query: 278 YTFNTML 284
T+N ++
Sbjct: 632 ATWNVLV 638
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 111/254 (43%), Gaps = 22/254 (8%)
Query: 110 LVYEFFRKV--QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
L E+F+ + KS+ L Y++++ L E + D ++ M+ GI S L+ +
Sbjct: 58 LALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISV 117
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
AG E+AL ++ KP V Y ++ A LD Q I++ M K+
Sbjct: 118 IGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGM 177
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE---DSNHIN-----REYDKKGLV----- 273
PN+ T NI++KA ++ + A KL EM+ D + ++ K G V
Sbjct: 178 EPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARE 237
Query: 274 -----IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
P + +N +++ E +++ + M++ G+ N + +I S AG V
Sbjct: 238 LAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNV 297
Query: 329 EL-LEITWEHLARA 341
EL L + + AR
Sbjct: 298 ELSLAVLAKMFARG 311
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/286 (19%), Positives = 115/286 (40%), Gaps = 22/286 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++ Y+A+++ + +GA V + G P+ Y +++V+ +N Y
Sbjct: 384 PNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCL 443
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+Q ++ PN + + + L G+ D A+ + M G + Y +L L
Sbjct: 444 IENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLK 503
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+ EA + + + +V+Y +I +G + A + +M P+ +T
Sbjct: 504 DRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAIT 563
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
NI++ AY + G A++L ++ H PDI + +++
Sbjct: 564 VNIVIDAYCKQGKVNIAIQLMDRLSAGKWH------------PDIIAYTSLISGICTHIG 611
Query: 293 WDDLELVYKRMLHHGLHFNAK------RHLRMILDASRAGKVELLE 332
++ + +RML G+ N RHL + +G V+ L+
Sbjct: 612 VEEAIVYLRRMLSEGISPNVATWNVLVRHL--FSNMGHSGAVQFLD 655
>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Glycine max]
Length = 693
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/373 (23%), Positives = 163/373 (43%), Gaps = 39/373 (10%)
Query: 5 PDTVAYRSIAV---TLGQ--------AGHIKELFDVIDSMRSLPKKKF-KTGTLER--WD 50
P+ V+YR + V LG G I+ F V ++ SL ++F + G + R W
Sbjct: 200 PNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRALWY 259
Query: 51 PR------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
R L P+++ + ++ +R + AF +L+++ +G KP+ T+ +++ +
Sbjct: 260 FRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCK 319
Query: 105 CGKYNLVYEFFRKVQKS--YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G + F K+ +S + PN L Y +++ R+ K + A + M+ +G+ +
Sbjct: 320 KGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTN 379
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ- 221
Y L C AG E A M+ + + P V +Y ++ G +Q A +
Sbjct: 380 TYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSG 439
Query: 222 MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
+N + VT I++ + + ++A+ LF +M K + PDI+++
Sbjct: 440 FRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMV------------KSGIQPDIHSYT 487
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL----LEITWEH 337
T++ EKR + E+ ++ + GL K + MI R G + L +H
Sbjct: 488 TLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDH 547
Query: 338 LARADRITPPALI 350
+D IT ALI
Sbjct: 548 GCASDSITYGALI 560
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/331 (19%), Positives = 133/331 (40%), Gaps = 35/331 (10%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSM---------------------RSLPKK 39
M P+ + + + L + G +K+ F++++ M + +K
Sbjct: 266 MGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEK 325
Query: 40 KFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM 99
F+ +P+++ Y A+++ R ++ A +L ++K+QG P+ TY ++
Sbjct: 326 AFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLI 385
Query: 100 EVMLACGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ G + YE + ++ + PN Y +V+ L ++G+ EA ++ R G+
Sbjct: 386 DGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLD 445
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
Y L C + ++AL+ +K+ K +P + SYT LI ++ +
Sbjct: 446 ADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMF 505
Query: 219 FNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI 277
F + F P T M+ Y G A+K F M++ D
Sbjct: 506 FEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHG------------CASDS 553
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
T+ ++ + + D+ +Y M+ GL
Sbjct: 554 ITYGALISGLCKQSKLDEARCLYDAMIEKGL 584
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 79/210 (37%), Gaps = 23/210 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y +I L + G ++E + V+ K F+ G L+ D V Y ++
Sbjct: 411 PNVCTYNAIVDGLCKKGRVQEAYKVL-------KSGFRNG--------LDADKVTYTILI 455
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ ++ + + A + ++ + G +P +Y ++ V + FF + V+ +
Sbjct: 456 SEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLV 515
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P Y ++ REG A+ M G + Y L LC K +EA
Sbjct: 516 PTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKLDEARCL 575
Query: 184 MDKI-------CKVANKPLVVSYTGLIQAC 206
D + C+V L Y + C
Sbjct: 576 YDAMIEKGLTPCEVTRVTLAYEYCKIDDGC 605
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 84/222 (37%), Gaps = 15/222 (6%)
Query: 130 KVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK 189
+ +V + G+ EA+ V +M +G+ S + + + G E A D++C
Sbjct: 136 QCMVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCA 195
Query: 190 VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFE 247
+P VSY ++ GN+ + M + F N T +++V+ + E G
Sbjct: 196 RGVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDN-ATLSLIVREFCEKGFVT 254
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
A+ F R + + GL P++ F M++ + + M+ G
Sbjct: 255 RALWYF-----------RRFCEMGLR-PNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRG 302
Query: 308 LHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPAL 349
N H +I + G E + L R++ P L
Sbjct: 303 WKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVL 344
>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
Length = 796
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 137/325 (42%), Gaps = 30/325 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD AY ++ +AG ++ V M D ++P +V YN VL
Sbjct: 183 PDASAYTALVSEFSRAGRFRDAVAVFRRM---------------VDGGVQPALVTYNVVL 227
Query: 65 NACVRRK-QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-Y 122
+ + W+ ++ +K+ G + TY ++ G Y + F +++ + +
Sbjct: 228 HVYSKMSVPWKEVVVLVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGF 287
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ + + L++ + + +EA+ ++ ME G S Y L G EEAL
Sbjct: 288 EPDKVTFNSLLDVYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALE 347
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
++ KP VV+YT LI G I A +++M +N CSPNL T N ++K +
Sbjct: 348 LKQEMEFRGMKPDVVTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHG 407
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G F E M +F ++ + +PD+ T+NT+L ++ V+K
Sbjct: 408 VRGKFTEMMIVFDDL------------RSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFK 455
Query: 302 RMLHHGLHFNAKRHLRMILDASRAG 326
M G ++ +I SR G
Sbjct: 456 EMKKAGYIPERDTYVSLISSYSRCG 480
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 117/253 (46%), Gaps = 14/253 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
EPD V +N++L+ + ++ E A VL++++ G PS TY ++ + G
Sbjct: 287 FEPDKVTFNSLLDVYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEAL 346
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E ++++ + P+ + Y L++ L R GK D A++ +M R G + Y L +
Sbjct: 347 ELKQEMEFRGMKPDVVTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMH 406
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNL 230
GK E ++ D + P VV++ L+ +G + +F +MK P
Sbjct: 407 GVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPER 466
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T ++ +Y GLF++AM++++ M E + PDI T+N +L A A
Sbjct: 467 DTYVSLISSYSRCGLFDQAMEIYKRMIEAG------------IYPDISTYNAVLSALARG 514
Query: 291 KRWDDLELVYKRM 303
RW E ++ M
Sbjct: 515 GRWVQAEKLFAEM 527
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 120/309 (38%), Gaps = 61/309 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKKFKTGTLERW------DPRLE- 54
PD V + ++ GQ G E+ V M+ +P++ + + D +E
Sbjct: 429 PDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEI 488
Query: 55 ----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
PDI YNAVL+A R +W A + +++ + KP +Y ++
Sbjct: 489 YKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYAN 548
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERR-------- 155
K + + + I P+ K LV + E A +++ RR
Sbjct: 549 AKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAFQELRRRRCSLDINV 608
Query: 156 ---------------------------GIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
I SAA Y L G CE+ + +I
Sbjct: 609 LNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIK 668
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS---PNLVTCNIMVKAYLEHGL 245
+P SY +I A G ++ A+ +F++MK CS P++VT NI +K+Y+ + +
Sbjct: 669 SSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMK--CSGVKPDIVTYNIFIKSYVANLM 726
Query: 246 FEEAMKLFQ 254
FEEA+ L +
Sbjct: 727 FEEAIDLVR 735
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 15/118 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +Y ++ G+ G +KE + M+ +G ++PDIV YN +
Sbjct: 674 PDRYSYNTVIYAYGRKGQMKEASRLFSEMKC-------SG--------VKPDIVTYNIFI 718
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY 122
+ V +E A +++ L QG KP+ TY ++E G+ F + K Y
Sbjct: 719 KSYVANLMFEEAIDLVRYLVAQGCKPNERTYNSILEGYCRHGRMVEAKSFLSNLPKIY 776
>gi|255660958|gb|ACU25648.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 348
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 138/283 (48%), Gaps = 15/283 (5%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ ++ PD VVYNA+LN R + + F + + + +G + S +++ ++M + GK +
Sbjct: 18 ESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNGKVD 76
Query: 110 LVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
V + +++S ++ +++ Y +LV+ + G D+++ +E E++G V A Y +
Sbjct: 77 EVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMI 136
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CS 227
LC + AL ++ + K KP V Y LI + + ++A +F +M CS
Sbjct: 137 NGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCS 196
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P ++T N ++ ++ +F EA L +E+ + KGL P + T++ ++
Sbjct: 197 PTIITYNTLINGLCKNEMFGEAYNLVKELLD-----------KGLD-PGVITYSMLMKGL 244
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ + + ++ ++ G + + H +I GK++L
Sbjct: 245 CLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQL 287
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 120/281 (42%), Gaps = 29/281 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D++ Y + + G+I + S+ L + K G L D Y+A++N
Sbjct: 93 DSITYGILVHGFCKNGYIDK------SLHVLEMAEQKGGVL---------DAFAYSAMIN 137
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ + A +VL + + G KP+ Y ++ ++ K+ FR++ + P
Sbjct: 138 GLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSP 197
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ Y L+N L + EA + V+++ +G+ Y L + LC K E AL
Sbjct: 198 TIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLW 257
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
+++ KP V + LI G +Q A ++ M + C+PNLV+ N +++ + +
Sbjct: 258 NQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKD 317
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
G A+ ++ + + + PDI ++N L
Sbjct: 318 GDIRNALVIWARILRNG------------LEPDIISYNITL 346
>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Vitis vinifera]
Length = 798
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 123/259 (47%), Gaps = 17/259 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T+ Y I L QA ++ ++++M+ +G PD + NA+L
Sbjct: 234 PNTMIYTIILSGLCQAKRTDDVHRLLNTMKV-------SGCC--------PDSITCNALL 278
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + Q + AF +LQ +++G Y +++ + +Y+ V E+ RK+ K+ I
Sbjct: 279 DGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIE 338
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y +L+ G D A++ + DM +RG+ Y L + C G ++A
Sbjct: 339 PDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSL 398
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+I K P +YT LI +G + A IFNQM+N CSP+++T N ++ +
Sbjct: 399 QLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCK 458
Query: 243 HGLFEEAMKLFQEMAEDSN 261
G EEA LF +M N
Sbjct: 459 AGELEEARHLFYKMEIGKN 477
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 117/272 (43%), Gaps = 49/272 (18%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
++ ++ A + E A ++K G KP TY ++ VM+ + L + ++
Sbjct: 134 FSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQML 193
Query: 120 K-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
K +Y PN + +L+N L + GKTD+A+ ++M ++GI + +Y + LC A + +
Sbjct: 194 KLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTD 253
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMV 237
+ + N MK + C P+ +TCN ++
Sbjct: 254 D-----------------------------------VHRLLNTMKVSGCCPDSITCNALL 278
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ + G +EA L Q ++K+G V+ I +++++D KR+D+++
Sbjct: 279 DGFCKLGQIDEAFALLQ-----------LFEKEGYVL-GIKGYSSLIDGLFRAKRYDEVQ 326
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++M G+ + + +I G V+
Sbjct: 327 EWCRKMFKAGIEPDVVLYTILIRGFCEVGMVD 358
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/326 (21%), Positives = 136/326 (41%), Gaps = 35/326 (10%)
Query: 31 DSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKP 90
D ++ +K FK G +EPD+V+Y ++ + A +L + Q+G P
Sbjct: 323 DEVQEWCRKMFKAG--------IEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSP 374
Query: 91 SATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAV 149
Y +++ G + ++ K+ P + Y +L+ + R G DEA
Sbjct: 375 DTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIF 434
Query: 150 EDMERRGIVGSAALYYDLARCLCSAGKCEEAL-----MQMDK-------ICKVANKPL-V 196
ME G S + L LC AG+ EEA M++ K + + A++ +
Sbjct: 435 NQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDT 494
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
S +++ +SG I A + Q+ + P+++T N+++ + + A KLF+E
Sbjct: 495 ASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRE 554
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
+ + PD T+ T++D R +D V +M+ +G ++ +
Sbjct: 555 LQLKGHS------------PDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVY 602
Query: 316 LRMILDASRAGKVELLEITWEHLARA 341
++ + R GK+ + W R+
Sbjct: 603 KCLMTWSCRKGKLSVAFSLWLKYLRS 628
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 78/353 (22%), Positives = 140/353 (39%), Gaps = 67/353 (18%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD+ YN++L+ V+++ + A V Q+ + P+ T+ +++ + GK + +
Sbjct: 163 KPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALK 222
Query: 114 FFRKV-QKSYIPNALAYKV----------------LVNTL-------------------W 137
F ++ QK PN + Y + L+NT+
Sbjct: 223 MFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFC 282
Query: 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV 197
+ G+ DEA + ++ E+ G V Y L L A + +E K+ K +P VV
Sbjct: 283 KLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVV 342
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
YT LI+ + G + A + N M + SP+ N ++K + + GL ++A L E+
Sbjct: 343 LYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEI 402
Query: 257 A------------------------EDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEK 291
+ +++ I + + G P I TFN ++D C A +
Sbjct: 403 SKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLG-CSPSIMTFNALIDGLCKAGE 461
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI 344
+ L YK + N LR+ A R L+ E L + I
Sbjct: 462 LEEARHLFYKMEIGK----NPSLFLRLSQGADRVMDTASLQTMVERLCESGLI 510
>gi|297739653|emb|CBI29835.3| unnamed protein product [Vitis vinifera]
Length = 852
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 131/308 (42%), Gaps = 36/308 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFK-------TGTLERWDPRLE- 54
PD Y ++ G+AG + +++D M ++P + G+ W L
Sbjct: 195 PDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNV 254
Query: 55 ----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
PD+V +N VL+A R Q+ + +K +P TT +V+ ++
Sbjct: 255 CKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVK 314
Query: 105 CGKYNLVYEFFRKVQKSY---IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
G+ + F +++ P+ + + +++ G+ + +A M G+ +
Sbjct: 315 LGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNI 374
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L S G +EA ++I K P VVSYT L+ A SG + A +F
Sbjct: 375 VSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFEL 434
Query: 222 MK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
M+ N C PNLV+ N ++ AY GL EA+++ EM + V P+I +
Sbjct: 435 MRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNG------------VQPNIVSI 482
Query: 281 NTMLDACA 288
T+L AC
Sbjct: 483 CTLLAACG 490
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 123/262 (46%), Gaps = 18/262 (6%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
+++W R +PD YNA++NA R QW A ++ + + PS +TY ++ +
Sbjct: 188 MQKW--RCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSS 245
Query: 106 GKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G + +K+ ++ + P+ + + ++++ R + + +S E M+ I
Sbjct: 246 GNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTL 305
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANK--PLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+ CL G+ +A+ + + + ++ P VV++T +I G I+N FN M
Sbjct: 306 NIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTM 365
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
PN+V+ N ++ AY HG+ +EA +F E+ ++ H PD+ ++
Sbjct: 366 LAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFH------------PDVVSYT 413
Query: 282 TMLDACAAEKRWDDLELVYKRM 303
++L+A + + V++ M
Sbjct: 414 SLLNAYGKSGKPEKAMKVFELM 435
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 103/467 (22%), Positives = 191/467 (40%), Gaps = 81/467 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V+Y ++ G G + E +++ M + G ++P+IV +L
Sbjct: 442 PNLVSYNALIDAYGSKGLLTEAVEILHEME-------RNG--------VQPNIVSICTLL 486
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
AC R Q VL + +G K + T Y + L+ G+Y+ +R ++ K
Sbjct: 487 AACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVK 546
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y VL++ + K EA+ +++M I S +Y + G+ EA
Sbjct: 547 PDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESM 606
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
K+ V +P V++YT +I A + N + A+ +F +M+ + P+ + C+ +++A+ +
Sbjct: 607 FTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNK 666
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + + L + M E N +F M+ AC+ + W ++ + K
Sbjct: 667 GGQPAKVLVLAEFMREKKIPFNNS------------SFFEMVSACSLLREWREIIGLIKL 714
Query: 303 M-----------LHHGLHFNAKRHLRMILDASRAGKVE-LLEITWEHLARADRI---TPP 347
M L+ LHF K +GK+E ++++ ++ +A I T
Sbjct: 715 MEPSISVVSIGLLNQLLHFLGK-----------SGKIETMMKLFYKIVASGAEINFYTYS 763
Query: 348 ALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLH 407
L+K N L ++ I L W+ + G + +
Sbjct: 764 ILLK----NLLAAGNWRKYIEVL--------------QWM-------EEAGLQPSVGMYR 798
Query: 408 EASSSLTTRNGSPY-PVLQNLISSCKDFLRTQSPAPVVNLTGTPLYS 453
SS R+G+ Y V+Q I S K R Q+P +N + P S
Sbjct: 799 SISSFAQNRSGAEYAAVIQERIESLKRNSRNQNPTKKLNDSLLPASS 845
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 28/249 (11%)
Query: 91 SATTYGLVMEVMLACGKYNLVYEFFR--KVQKSYIPNALAYKVLVNTLWREGKTDEAVSA 148
S + L++ + G + FR K QK+Y Y +++ R D+A
Sbjct: 125 SRKNFPLLIREITQIGSLEHSVQVFRWMKNQKNYCARNDIYNMMIRLHARHNIVDQARGL 184
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+M++ A Y L AG+ A+ MD + + A P +Y LI AC
Sbjct: 185 FFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGS 244
Query: 209 SGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ------------- 254
SGN + A + +M +N P+LVT NI++ AY + + + F+
Sbjct: 245 SGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTT 304
Query: 255 ---------EMAEDSNHI---NREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
++ ++ I N +K+ PD+ TF T++ + + ++ + +
Sbjct: 305 LNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNT 364
Query: 303 MLHHGLHFN 311
ML GL N
Sbjct: 365 MLAEGLKPN 373
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 116/290 (40%), Gaps = 24/290 (8%)
Query: 59 VYNAVLNACVRRK---QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
+YN ++ R Q G F+ +Q+ + KP A TY ++ G++
Sbjct: 164 IYNMMIRLHARHNIVDQARGLFFEMQKWRC---KPDAETYNALINAHGRAGQWRWAMNIM 220
Query: 116 RKVQKSYIPNALA-YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ ++ IP + + Y L+N G EA++ + M G VG + +++
Sbjct: 221 DDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENG-VGPDLVTHNIVLSAYKR 279
Query: 175 GKCEEALMQMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQMK---NFCSPNL 230
G ++ ++ K N +P + +I + G A IFN MK + C P++
Sbjct: 280 GNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDV 339
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT ++ Y G E F M + + P+I ++N ++ A A+
Sbjct: 340 VTFTTIIHLYSVCGQIENCQTAFNTMLAEG------------LKPNIVSYNALIGAYASH 387
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
+ V+ + +G H + + ++ ++GK E +E + R
Sbjct: 388 GMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRR 437
>gi|255660998|gb|ACU25668.1| pentatricopeptide repeat-containing protein [Mulguraea
asparagoides]
Length = 376
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 138/283 (48%), Gaps = 15/283 (5%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ ++ PD VVYNA+LN R + + F + + + +G + S +++ ++M + GK +
Sbjct: 18 ESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGNEGNR-SVSSFNIMMRGLFDKGKVD 76
Query: 110 LVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
V + ++KS ++ +++ Y +LV+ + G ++++ +E E++G V A Y +
Sbjct: 77 EVISIWELMKKSDFVEDSITYGILVHGFCKNGYINKSLHVLEMAEQKGGVLDAFAYSAMI 136
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CS 227
LC ++A+ ++ + K KP Y LI + + ++A +F +M CS
Sbjct: 137 NGLCKEANLDKAVSVLNDMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTVRCS 196
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P ++T N ++ ++ +F EA L +EM E KGL P + T++ ++
Sbjct: 197 PTIITYNTLINGLCKNEMFGEAYDLVKEMLE-----------KGLN-PSVITYSMLMKGL 244
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ + + ++ +++ G + + H +I GK +L
Sbjct: 245 CLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTQL 287
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 121/292 (41%), Gaps = 29/292 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D++ Y + + G+I + S+ L + K G L D Y+A++N
Sbjct: 93 DSITYGILVHGFCKNGYINK------SLHVLEMAEQKGGVL---------DAFAYSAMIN 137
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ + A VL + + G KP+A Y ++ ++ K+ FR++ P
Sbjct: 138 GLCKEANLDKAVSVLNDMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTVRCSP 197
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ Y L+N L + EA V++M +G+ S Y L + LC K E AL
Sbjct: 198 TIITYNTLINGLCKNEMFGEAYDLVKEMLEKGLNPSVITYSMLMKGLCLDHKVERALQLW 257
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
+++ KP V + LI G Q A ++ M + C+PNLVT N +++ + +
Sbjct: 258 NQVISKGFKPDVQMHNILIHGLCSVGKTQLALSLYJDMNRWKCAPNLVTHNTLMEGFYKD 317
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
G A+ ++ + + + PDI ++N L + R D
Sbjct: 318 GDIRNALVIWARVLRNG------------LEPDIISYNITLKGLCSCNRICD 357
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/187 (18%), Positives = 74/187 (39%), Gaps = 17/187 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P + Y ++ L + E +D++ M LE+ L P ++ Y+ ++
Sbjct: 197 PTIITYNTLINGLCKNEMFGEAYDLVKEM------------LEK---GLNPSVITYSMLM 241
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ E A + Q+ +G KP + +++ + + GK L + + +
Sbjct: 242 KGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTQLALSLYJDMNRWKCA 301
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK-CEEALM 182
PN + + L+ +++G A+ + R G+ Y + LCS + C+ L
Sbjct: 302 PNLVTHNTLMEGFYKDGDIRNALVIWARVLRNGLEPDIISYNITLKGLCSCNRICDAILF 361
Query: 183 QMDKICK 189
D + K
Sbjct: 362 LHDAVRK 368
>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 665
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 131/297 (44%), Gaps = 30/297 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y + + ++ + V+D MR+ K T P+IV YN ++
Sbjct: 170 PSVVTYTVLLEAVCKSSGFGQAMKVLDEMRA------KGCT---------PNIVTYNVII 214
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYI 123
N R + + A +L +L G +P +Y V++ + A ++ V F V+ + +
Sbjct: 215 NGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCV 274
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + +LV R G + A+ ++ M G + L + +C G+ ++A
Sbjct: 275 PNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEF 334
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + P +SYT +++ +G ++A + N+M + C PN VT N + +
Sbjct: 335 LNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQ 394
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD-LEL 298
GL ++A+ L ++M E + I T+N +++ + R D LEL
Sbjct: 395 KGLIDQAILLIEQMPEYGCSVG------------IVTYNALVNGFCVQGRVDSALEL 439
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 77/371 (20%), Positives = 154/371 (41%), Gaps = 74/371 (19%)
Query: 1 MSSY---PDTVAYRSIAVTLGQAGH---IKELFDVIDSMRSLPKKKFKTGTLERWDPRLE 54
+SSY PDTV+Y ++ L A ++ LF E +
Sbjct: 233 LSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLF------------------CEMVENNCV 274
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ V ++ ++ R E A VL ++ + G + T +V+ + G+ + +EF
Sbjct: 275 PNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEF 334
Query: 115 FRKVQKSY--IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ SY P+ ++Y ++ L R G+ ++A + +M R+ + + LC
Sbjct: 335 LNNM-GSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILC 393
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ----------- 221
G ++A++ ++++ + +V+Y L+ G + +A +FN
Sbjct: 394 QKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSLPCEPNTITYT 453
Query: 222 ----------------------MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
M+N C N+VT N++V + + G EEA++L Q+M E
Sbjct: 454 TLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEH 513
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD-LELVYKRMLHHGLHFNAKRHLRM 318
P++ TFNT+LD + ++ LEL++ ++ G+ + + +
Sbjct: 514 G------------CTPNLITFNTLLDGITEDCNSEEALELLHG-LVSKGISLDTITYSSI 560
Query: 319 ILDASRAGKVE 329
+ SR ++E
Sbjct: 561 VDVLSREDRIE 571
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 112/286 (39%), Gaps = 51/286 (17%)
Query: 46 LERWDPRLE-PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ER R E PD+ + ++ RR + A VL+ + G Y ++
Sbjct: 58 VERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCR 117
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G+ + + P+A Y L+ L G+ +A+S ++DM RR
Sbjct: 118 YGRLDAARRLIASMPVP--PDAYTYTPLIRGLCDRGRVGDALSLLDDMLRR--------- 166
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK- 223
+C+ P VV+YT L++A S A + ++M+
Sbjct: 167 -----------ECQ---------------PSVVTYTVLLEAVCKSSGFGQAMKVLDEMRA 200
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
C+PN+VT N+++ ++A ++ ++ PD ++ T+
Sbjct: 201 KGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQ------------PDTVSYTTV 248
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
L A KRW+D+E+++ M+ + N ++ R G VE
Sbjct: 249 LKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVE 294
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 99/241 (41%), Gaps = 31/241 (12%)
Query: 116 RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
R + P+ L+ L R G+T +A + E G Y L C G
Sbjct: 60 RSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCRYG 119
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCN 234
+ + A I + P +YT LI+ D G + +A + + M + C P++VT
Sbjct: 120 RLDAA---RRLIASMPVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYT 176
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
++++A + F +AMK+ EM KG P+I T+N +++ E R D
Sbjct: 177 VLLEAVCKSSGFGQAMKVLDEMR-----------AKGCT-PNIVTYNVIINGMCREDRVD 224
Query: 295 DLELVYKRMLHHGLHFNAKRH---LRMILDASRAGKVELL------------EITWEHLA 339
D + R+ +G + + L+ + A R VE+L E+T++ L
Sbjct: 225 DARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLV 284
Query: 340 R 340
R
Sbjct: 285 R 285
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/274 (19%), Positives = 105/274 (38%), Gaps = 25/274 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLE------------RWDPR 52
P+ V + + L Q G I + +I+ M P+ G + R D
Sbjct: 380 PNEVTFNTFICILCQKGLIDQAILLIEQM---PEYGCSVGIVTYNALVNGFCVQGRVDSA 436
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
LE P+ + Y +L ++ + A +L ++ Q + T+ +++
Sbjct: 437 LELFNSLPCEPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQ 496
Query: 105 CGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G E +++ + PN + + L++ + + ++EA+ + + +GI
Sbjct: 497 KGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTIT 556
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y + L + EEA+ + + +P V Y ++ A A F M
Sbjct: 557 YSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMV 616
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
N C PN T I+++ GL +EA + E+
Sbjct: 617 SNSCMPNESTYVILIEGLAREGLLKEARYVLSEL 650
>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 445
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 136/308 (44%), Gaps = 32/308 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V+Y ++ L +AG K V +R L K PD+V+YN ++N
Sbjct: 162 DQVSYGTLINGLCKAGETKA---VARLLRKLEGHSVK------------PDVVMYNTIIN 206
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIP 124
+ + K A V ++ +G P TY ++ GK + +++ K+ P
Sbjct: 207 SLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINP 266
Query: 125 NALAYKVLVNTLWREGK---TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+ + VL++ L +EGK DEA+S E+M+ + ++ Y L LC E A+
Sbjct: 267 DVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAI 326
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAY 240
+ ++ + +P V SYT L+ G ++ A F + C N+ N+M+
Sbjct: 327 ALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGL 386
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ GLF EAM L +M + KG +P+ TF T++ A + + D E +
Sbjct: 387 CKAGLFGEAMDLKSKM-----------EGKG-CMPNAITFRTIICALSEKDENDKAEKIL 434
Query: 301 KRMLHHGL 308
+ M+ GL
Sbjct: 435 REMIARGL 442
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 122/280 (43%), Gaps = 19/280 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
PD + N ++ R + + + Q+ QG + +YG ++ + G+ V
Sbjct: 124 FHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGLCKAGETKAVA 183
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
RK++ S P+ + Y ++N+L + +A +M +GI Y L
Sbjct: 184 RLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGF 243
Query: 172 CSAGKCEEALMQMDKICKVAN-KPLVVSYTGLIQACLDSGN---IQNAAYIFNQMKN-FC 226
C GK +EA ++++ K+ N P V +++ LI A G + A +F +MK+
Sbjct: 244 CIMGKMKEAFSLLNEM-KLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNM 302
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
P++VT N ++ ++ E A+ L +EM E + PD+Y++ +LD
Sbjct: 303 IPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHG------------IQPDVYSYTILLDG 350
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
R + + ++ +L G H N + MI +AG
Sbjct: 351 LCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAG 390
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 134/299 (44%), Gaps = 18/299 (6%)
Query: 46 LERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
++++P + PD+ + ++N + AF V + ++G P A T +++ +
Sbjct: 81 FKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCF 140
Query: 105 CGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ F +V + + + ++Y L+N L + G+T + +E + +
Sbjct: 141 RGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVM 200
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + LC +A ++ P VV+YT LI G ++ A + N+MK
Sbjct: 201 YNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMK 260
Query: 224 -NFCSPNLVTCNIMVKAYLEHG---LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
+P++ T ++++ A + G + +EAM LF+EM + +IPDI T
Sbjct: 261 LKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKN------------MIPDIVT 308
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
+N+++D + + K M HG+ + + ++ + G++E+ + ++HL
Sbjct: 309 YNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQHL 367
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 24/184 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDV-------------------IDSMRSLPKKKFKTGT 45
PD V Y ++ G +KE F + ID++ KKK
Sbjct: 231 PDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEA 290
Query: 46 LERWD----PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
+ ++ + PDIV YN++++ + E A +L+++K+ G +P +Y ++++
Sbjct: 291 MSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDG 350
Query: 102 MLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ G+ + EFF+ + K N Y V++N L + G EA+ ME +G + +
Sbjct: 351 LCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPN 410
Query: 161 AALY 164
A +
Sbjct: 411 AITF 414
>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
Length = 882
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 130/280 (46%), Gaps = 16/280 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
LEP+++ Y +++A + + E A ++ ++ + P TY +M + GK
Sbjct: 83 LEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAK 142
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
FR++++ +PN +Y L+++L++EG EA M RGI +Y L L
Sbjct: 143 SVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGL 202
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
AG A + + + P V+Y+ LI G++ + +M + PN+
Sbjct: 203 FKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNV 262
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAA 289
+ + +V Y + GL EAM + ++M + + ++P+++ + T++D A
Sbjct: 263 IVYSSIVDGYTKKGLLNEAMDVMRKMVQRN------------ILPNVFVYGTLIDGYFKA 310
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++R L+L +K M GL N + + R+G++E
Sbjct: 311 DQRGIALDL-FKEMKSRGLEENNFVIDSFVNNLKRSGRME 349
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/353 (20%), Positives = 147/353 (41%), Gaps = 34/353 (9%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ + Y SI + G + E DV MR + ++ + P++ VY +
Sbjct: 259 FPNVIVYSSIVDGYTKKGLLNEAMDV---MRKMVQR------------NILPNVFVYGTL 303
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSY 122
++ + Q A + +++K +G + + + + G+ E F+ + +
Sbjct: 304 IDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGL 363
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P+ + Y +++ ++ GK +A + ++M + Y L L GK E
Sbjct: 364 LPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESF 423
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYL 241
+ ++ P ++ +I A GN+ NA + N+MK++ PN +TCNI+V+
Sbjct: 424 HTG-MRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLC 482
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G E+ M L +M H P T +LDA + +R D + +
Sbjct: 483 AAGEIEKTMDLLNDMLVMGFH------------PTPTTHKAVLDASSKSRRADVILHXHD 530
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR----ADRITPPALI 350
+++ G+ + + +I R G + + ++ + AD IT ALI
Sbjct: 531 QLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALI 583
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 126/279 (45%), Gaps = 16/279 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + + P+++VY+++++ ++ A V++++ Q+ P+ YG +++
Sbjct: 252 EMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKAD 311
Query: 107 KYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ + + F++++ + N VN L R G+ +EA +DM RG++ Y
Sbjct: 312 QRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYT 371
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+ AGK +A ++ + ++ VV+Y LI G ++ ++ +
Sbjct: 372 SMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLG 431
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
+P+ T N M+ AY + G A+KL EM + Y K P+ T N ++
Sbjct: 432 LAPDSATFNTMINAYCKEGNLGNALKLLNEM--------KSYGLK----PNSITCNILVQ 479
Query: 286 -ACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDAS 323
CAA + ++L+ ML G H H + +LDAS
Sbjct: 480 RLCAAGEIEKTMDLL-NDMLVMGFHPTPTTH-KAVLDAS 516
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 17/227 (7%)
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
+ VL++ R G+ AV +E M+ G Y L C G A M +I
Sbjct: 20 FNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEIS 79
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFE 247
V +P V++YT LI A S +++A Y++++M P++VT ++ + G E
Sbjct: 80 LVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVE 139
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
EA +F+EM E V+P+ +++ T++D+ E + ++ RM+ G
Sbjct: 140 EAKSVFREMEEVG------------VVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRG 187
Query: 308 LHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPALI 350
+ F+ + ++ +AG ++ ++ E + +T ALI
Sbjct: 188 IGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALI 234
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/347 (20%), Positives = 142/347 (40%), Gaps = 35/347 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLER---- 48
P+ +Y ++ +L + G++ E F + M +L FK G
Sbjct: 155 PNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDM 214
Query: 49 ----WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ L P+ V Y+A+++ + +LQ+++++ P+ Y +++
Sbjct: 215 FQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTK 274
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G N + RK VQ++ +PN Y L++ ++ + A+ ++M+ RG+ + +
Sbjct: 275 KGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFV 334
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
L +G+ EEA + P V+YT ++ +G +A I +M
Sbjct: 335 IDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMT 394
Query: 224 NFCSP-NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
S ++V N+++ + G +E S + + GL PD TFNT
Sbjct: 395 EKSSGFDVVAYNVLINGLFKLGKYE------------SESFHTGMRQLGLA-PDSATFNT 441
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
M++A E + + M +GL N+ ++ AG++E
Sbjct: 442 MINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIE 488
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/367 (21%), Positives = 134/367 (36%), Gaps = 68/367 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLERWDPR 52
PD V Y S+ +AG + F++ M L FK G E
Sbjct: 365 PDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFH 424
Query: 53 -------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
L PD +N ++NA + A +L ++K G KP++ T ++++ + A
Sbjct: 425 TGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAA 484
Query: 106 GKYNLVYEFFRKV-------------------QKSYIPNAL-----------------AY 129
G+ + + KS + + Y
Sbjct: 485 GEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHXHDQLVGMGVKLDLSTY 544
Query: 130 KVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK 189
L++T R G A +DM +GI+ Y L C + ++A ++
Sbjct: 545 NTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLT 604
Query: 190 VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEE 248
P V +Y L+ + I+ AA + NQMK PN T +I+V + + G +E
Sbjct: 605 EGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKE 664
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+KL+ EM KG V P T+N ++ A K+ + + + M G+
Sbjct: 665 CVKLYCEMI-----------TKGFV-PKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGI 712
Query: 309 HFNAKRH 315
N+ +
Sbjct: 713 PPNSSTY 719
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/333 (20%), Positives = 133/333 (39%), Gaps = 35/333 (10%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S PD V Y I L ++G ++E V M + + P+ Y
Sbjct: 117 SLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVG---------------VVPNRFSYA 161
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQK 120
++++ + AF + ++ +G Y +M+ + G N + F+ +++
Sbjct: 162 TLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEE 221
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
S +PN + Y L++ + G ++ +++ME + I + +Y + G EA
Sbjct: 222 SLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEA 281
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240
+ M K+ + P V Y LI + A +F +MK S L N ++ ++
Sbjct: 282 MDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMK---SRGLEENNFVIDSF 338
Query: 241 LEH----GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ + G EEA +LF++M +GL +PD + +M+D + D
Sbjct: 339 VNNLKRSGRMEEADELFKDMMS-----------RGL-LPDRVNYTSMMDGFFKAGKESDA 386
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + M F+ + +I + GK E
Sbjct: 387 FNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYE 419
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/333 (17%), Positives = 135/333 (40%), Gaps = 35/333 (10%)
Query: 29 VIDSMRSLPKKKFKTGTLERWDP--------RLEPDIVVYNAVLNACVRRKQWEGAFWVL 80
VIDS + K+ +G +E D L PD V Y ++++ + + AF +
Sbjct: 334 VIDSFVNNLKR---SGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIA 390
Query: 81 QQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREG 140
Q++ ++ Y +++ + GKY Q P++ + ++N +EG
Sbjct: 391 QEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFNTMINAYCKEG 450
Query: 141 KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYT 200
A+ + +M+ G+ ++ L + LC+AG+ E+ + ++ + + P ++
Sbjct: 451 NLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHK 510
Query: 201 GLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
++ A S + +Q+ +L T N ++ + G+ A +F++M
Sbjct: 511 AVLDASSKSRRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGK 570
Query: 260 ------------------SNHINREYDKKGLVI-----PDIYTFNTMLDACAAEKRWDDL 296
S+H+ + + ++ P++ T+N +L +A + +
Sbjct: 571 GILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEA 630
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ +M GL NA + ++ + G ++
Sbjct: 631 AGLVNQMKERGLVPNATTYDILVSGHGKIGNMK 663
>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
Length = 700
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 134/288 (46%), Gaps = 14/288 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P V+YN ++N + + GAF + +Q+K + +P TY ++ +
Sbjct: 365 LVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAE 424
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +++KS + P+ + L++ G+ ++ + + DM+++GI + + +
Sbjct: 425 DLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAF 484
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C GK EA+ +D + P Y +I A ++SG+ + A + +MKN S ++
Sbjct: 485 CKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASI 544
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N+++K +EA +L + +GL PD+ ++NT++ AC +
Sbjct: 545 VTYNLLLKGLCRSSQIDEAEELIYTLR-----------NQGLR-PDVVSYNTIISACCNK 592
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
D + + M +G+ + + ++ + AG+V +E ++ +
Sbjct: 593 GDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQM 640
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 124/306 (40%), Gaps = 29/306 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +Y + L ++G + V D M + G + W + YN ++
Sbjct: 192 PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDM-------GVVPNW--------ITYNTMI 236
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ V+ E F + Q+ G KP+ TY +++ + G+ + ++ S
Sbjct: 237 DGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMF 296
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y +L + L R G++ +S + ++G++ A L LC GK +A
Sbjct: 297 PDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQV 356
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
++ + P V Y LI +++ A IF QMK+ P+ +T N ++ +
Sbjct: 357 LEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCK 416
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ +A L EM +K V P + TFNT++DA + + V
Sbjct: 417 LEMVTKAEDLVMEM------------EKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSD 464
Query: 303 MLHHGL 308
M G+
Sbjct: 465 MQQKGI 470
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 101/244 (41%), Gaps = 19/244 (7%)
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY---IPN 125
R AF +L G +P + V++ +A G ++ R++ +S P+
Sbjct: 137 RHADVRAAFGLLVA---AGARPDTFAWNKVVQACVAAGDLDVALAMVRRMGRSEGAPPPD 193
Query: 126 ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMD 185
A +Y V++ LWR GK +A+ ++M G+V + Y + G E D
Sbjct: 194 AFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRD 253
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEHG 244
++ KP +V+Y L+ +G + + ++M + P+ T +I+ G
Sbjct: 254 QMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTG 313
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
+ LF E KKG+++ YT + +L+ + + E V + ++
Sbjct: 314 ESRTMLSLFAESL-----------KKGVML-GAYTCSILLNGLCKDGKVAKAEQVLEMLV 361
Query: 305 HHGL 308
H GL
Sbjct: 362 HTGL 365
>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62914, mitochondrial; Flags: Precursor
gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats. EST gb|AA728420 comes from this gene
[Arabidopsis thaliana]
gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 528
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/374 (19%), Positives = 158/374 (42%), Gaps = 64/374 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V S+ I + ++D M + K PD V + ++
Sbjct: 146 PDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYK---------------PDTVTFTTLI 190
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + A ++ ++ Q+G +P TYG V+ + G +L K++ + I
Sbjct: 191 HGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIE 250
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + Y ++++L + D+A++ +ME +G+ + Y L CLC+ G+ +A
Sbjct: 251 ANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRL 310
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--------------------- 222
+ + + P +V+++ LI A + G + A ++ +M
Sbjct: 311 LSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCM 370
Query: 223 ---------------KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
+ C PN+VT N ++ + + ++ M+LF+EM++
Sbjct: 371 LDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQ--------- 421
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
+GLV + T+ T++ + D+ ++V+K+M+ G+H N + ++ + GK
Sbjct: 422 --RGLV-GNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGK 478
Query: 328 VELLEITWEHLARA 341
+ + +E+L R+
Sbjct: 479 LAKAMVVFEYLQRS 492
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 136/291 (46%), Gaps = 25/291 (8%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPDIV N++LN + A ++ Q+ + G KP T+ ++ + K +
Sbjct: 145 EPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVA 204
Query: 114 FF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R VQ+ P+ + Y +VN L + G TD A++ + ME I + +Y + LC
Sbjct: 205 LIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLC 264
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
++AL ++ +P V++Y+ LI + G +A+ + + M + +PNLV
Sbjct: 265 KYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLV 324
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAE---DSN------------HINREYDKKGLV--- 273
T + ++ A+++ G +A KL++EM + D N ++R + K ++
Sbjct: 325 TFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELM 384
Query: 274 -----IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
+P++ T+NT+++ KR D +++ M GL N + +I
Sbjct: 385 IRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLI 435
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 138/314 (43%), Gaps = 40/314 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR----------------SLPKKKFKTGTL-- 46
PD V Y ++ L + G ++++ M SL K + + L
Sbjct: 216 PDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNL 275
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E + + P+++ Y+++++ +W A +L + ++ P+ T+ +++ +
Sbjct: 276 FTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVK 335
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK + + + +++S PN Y L+N + EA +E M R+ + +
Sbjct: 336 KGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVT 395
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLV---VSYTGLIQACLDSGNIQNAAYIFN 220
Y L C A + ++ M+ +++ + LV V+YT LI + + NA +F
Sbjct: 396 YNTLINGFCKAKRVDKG---MELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFK 452
Query: 221 QMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
QM + PN++T NI++ ++G +AM +F EY ++ + PDIYT
Sbjct: 453 QMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVF------------EYLQRSTMEPDIYT 500
Query: 280 FNTMLDACAAEKRW 293
+N M++ +W
Sbjct: 501 YNIMIEGMCKAGKW 514
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/288 (19%), Positives = 125/288 (43%), Gaps = 14/288 (4%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P I+ ++ +L+A + +++ ++++ G + TY +++ C + +L
Sbjct: 76 PSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALAL 135
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y P+ + L+N + +AV+ V+ M G + L L
Sbjct: 136 LGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFL 195
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
K EA+ +D++ + +P +V+Y ++ G+ A + N+M+ N+V
Sbjct: 196 HNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVI 255
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+ ++ + ++ ++A+ LF EM + KG V P++ T+++++ R
Sbjct: 256 YSTVIDSLCKYRHEDDALNLFTEM-----------ENKG-VRPNVITYSSLISCLCNYGR 303
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
W D + M+ ++ N +I + GK+ E +E + +
Sbjct: 304 WSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIK 351
>gi|296088227|emb|CBI35741.3| unnamed protein product [Vitis vinifera]
Length = 437
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 4/212 (1%)
Query: 222 MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGL-VIPDIYTF 280
MK CSPN+ T N M+K Y + +F +A +LF+E + N D + ++PD+YT+
Sbjct: 1 MKYHCSPNIGTINAMLKVYGRNDMFSKAKELFEETKRSTFASNTCMDDGSISLVPDLYTY 60
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
++ML+A A+ +W+ E VYK M G + +H ++ ASRAGK LLE ++ +
Sbjct: 61 SSMLEASASAHQWEFFEYVYKEMTLSGYQLDQSKHALLLGKASRAGKWHLLEHAFDTILE 120
Query: 341 ADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQ--HFG 398
A I P++ E C +Y A++ L++ S W F + +
Sbjct: 121 AGEIPHPSIFTEMICQATAQHNYERAVT-LINAMAHAPFVVSEKQWTDLFVTDDRISRVN 179
Query: 399 QDTLIQLLHEASSSLTTRNGSPYPVLQNLISS 430
+ L+ LH + + Y LQ+L S
Sbjct: 180 LEKLLDSLHNCDVAEEATVSNLYKSLQSLCGS 211
>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata]
gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata]
Length = 1202
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 154/345 (44%), Gaps = 34/345 (9%)
Query: 37 PKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG 96
P+K FK + D +EP ++ +N +L + E A VL ++K QG P A T+
Sbjct: 638 PEKSFKVRERMKAD-NIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFS 696
Query: 97 LVMEVMLACGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERR 155
++ + + K + + S + NA +L+N L +EG+ ++A + +
Sbjct: 697 ILFDGYSSNDKADAALGVYETAVDSGLKMNAYTCSILLNALCKEGQIEKAEEILGREMAK 756
Query: 156 GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA 215
G+V + LY + G A M++D + K KP ++Y LI+ + G+++NA
Sbjct: 757 GLVPNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENA 816
Query: 216 AYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN---------- 264
N+MK SP++ T NI++ Y F++ L +EM ++ N
Sbjct: 817 EQEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINC 876
Query: 265 --------------REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHF 310
R+ + +G V P++ +N ++D C ++ + +D + M G+
Sbjct: 877 LCKGSKLLEAQIVKRDMEDRG-VSPNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIEL 935
Query: 311 NAKRHLRMILDASRAGKVE-----LLEITWEHLARADRITPPALI 350
N + +I S GK+ LLEI+ + L + D T +LI
Sbjct: 936 NLVTYNTLIDGLSMNGKLAEAEDMLLEISRKGL-KPDVFTYNSLI 979
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 86/369 (23%), Positives = 161/369 (43%), Gaps = 43/369 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +AY + T + G D+ ++ + + K K K + P + YN ++
Sbjct: 795 PDHLAYNCLIRTFCELG------DMENAEQEVNKMKLKG---------VSPSVETYNILI 839
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
R+ +++ F +L++++ G P+ +YG ++ + K R ++ +
Sbjct: 840 GGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVS 899
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y +L++ +GK ++A E+M ++GI + Y L L GK EA
Sbjct: 900 PNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDM 959
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ +I + KP V +Y LI +GN+Q ++ +MK + P L T ++++ +
Sbjct: 960 LLEISRKGLKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTSGIKPTLKTYHLLISLCTK 1019
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G+ E K+F EM+ + PD+ +N +L A D + K+
Sbjct: 1020 EGI-ELTKKIFGEMS---------------LQPDLLVYNGVLHCYAVHGDMDKAFNLQKQ 1063
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARADRITPPA----LIKERFCNR 357
M+ + + + +IL + GK+ E+ + E AR + P A +I + C
Sbjct: 1064 MIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMKAR--EMEPEADTYDIIVKGHC-- 1119
Query: 358 LENKDYGSA 366
E KDY A
Sbjct: 1120 -EMKDYMGA 1127
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/280 (20%), Positives = 120/280 (42%), Gaps = 21/280 (7%)
Query: 37 PKKKFKTGTLERWDPRLEPDI--VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATT 94
PK+ F +L P L+ D ++ + +LN + F+ L + +G PS+ +
Sbjct: 465 PKELFSAFSLS--SPSLKHDFSYLLLSVLLNESKMISEAADLFFAL---RNEGIFPSSDS 519
Query: 95 YGLVMEVMLACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDME 153
L+++ ++ ++ + F + +S + P+ Y + + + + M+
Sbjct: 520 LTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMK 579
Query: 154 RRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQ 213
I + +Y L LC + ++A D++ P +++Y LI GN +
Sbjct: 580 HDRISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITYNTLIDGYCKDGNPE 639
Query: 214 NAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGL 272
+ + +MK + P+L+T N ++K + G+ E+A + EM +
Sbjct: 640 KSFKVRERMKADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQG------------ 687
Query: 273 VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
+PD +TF+ + D ++ + D VY+ + GL NA
Sbjct: 688 FVPDAFTFSILFDGYSSNDKADAALGVYETAVDSGLKMNA 727
Score = 38.1 bits (87), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 75/173 (43%), Gaps = 7/173 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD+ YN++++ + + +++K G KP+ TY L++ + C K +
Sbjct: 968 LKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTSGIKPTLKTYHLLISL---CTKEGI-- 1022
Query: 113 EFFRKV--QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
E +K+ + S P+ L Y +++ G D+A + + M + I Y L
Sbjct: 1023 ELTKKIFGEMSLQPDLLVYNGVLHCYAVHGDMDKAFNLQKQMIEKSIGLDKTTYNSLILG 1082
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
GK E +D++ +P +Y +++ + + A + +M+
Sbjct: 1083 QLKVGKLCEVRSLIDEMKAREMEPEADTYDIIVKGHCEMKDYMGAYVWYREMQ 1135
>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
Length = 1099
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/365 (23%), Positives = 152/365 (41%), Gaps = 56/365 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS----------------LPKKK-------F 41
P V Y ++ + G I + F+++D M S L KK+
Sbjct: 367 PSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMAL 426
Query: 42 KTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
LER +L P ++ YN++++ + E A+ +L + + G P TY + ++
Sbjct: 427 LNKMLER---KLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDT 483
Query: 102 MLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ G+ F V+ K N + Y L++ + GK D A S +E M + +
Sbjct: 484 LCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPN 543
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
+ Y L LC K +EA + K+ + KP VV+YT LI L G +A +FN
Sbjct: 544 SYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFN 603
Query: 221 QMKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
M + P++ T + AY G+ EE + +M E+ ++PD+ T
Sbjct: 604 HMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEG------------ILPDLVT 651
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
+ ++D Y R+ GL A L+ ++D + ++ I ++L+
Sbjct: 652 YTVLIDG-------------YARL---GLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLS 695
Query: 340 RADRI 344
+R+
Sbjct: 696 HENRM 700
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/364 (21%), Positives = 143/364 (39%), Gaps = 54/364 (14%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD Y +++ R K + A+ V + Q+G + + +Y ++ + G+ N
Sbjct: 225 LHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEAL 284
Query: 113 EFF--------------------------RKVQ----------KSYIPNALAYKVLVNTL 136
+ F RKV+ K PN Y VL++ L
Sbjct: 285 KLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGL 344
Query: 137 WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV 196
+E K DEA + +M +G++ S Y L C G ++A +D + + P
Sbjct: 345 CKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNT 404
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
+Y LI + A + N+M + SP+L+T N ++ + E A +L
Sbjct: 405 RTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSL 464
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
M E+ ++PD +T++ +D E R ++ ++ + G+ N +
Sbjct: 465 MNENG------------LVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIY 512
Query: 316 LRMILDASRAGKVE----LLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLV 371
+I + GK++ LLE + T LI E C + K+ S ++ ++
Sbjct: 513 TALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLI-EGLCKEKKMKEASSLVAKML 571
Query: 372 SHPV 375
+ V
Sbjct: 572 TMGV 575
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/328 (19%), Positives = 136/328 (41%), Gaps = 40/328 (12%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+ V+Y ++ L +AG I E + M + P + Y ++
Sbjct: 263 NEVSYTNLIHGLCEAGRINEALKLFADMT---------------EDNCCPTVRTYTVLIY 307
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIP 124
A + A + ++K++G +P+ TY ++++ + K + + ++ +K IP
Sbjct: 308 ALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIP 367
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ + Y L++ +EG D+A ++ ME + Y +L LC K +A+ +
Sbjct: 368 SVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALL 427
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
+K+ + P +++Y LI ++++A + + M +N P+ T ++ + +
Sbjct: 428 NKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKE 487
Query: 244 GLFEEAMKLFQEMAEDSNHINR--------EYDKKGLV---------------IPDIYTF 280
G EEA LF + N Y K G + +P+ YT+
Sbjct: 488 GRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTY 547
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGL 308
N +++ EK+ + + +ML G+
Sbjct: 548 NVLIEGLCKEKKMKEASSLVAKMLTMGV 575
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 130/311 (41%), Gaps = 30/311 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y +I ++L + F +ID M KT LE + ++ P+I +NA++
Sbjct: 157 PTLRCYNTILMSLSK-------FLLIDEM--------KTVYLELLNNQISPNIYTFNAMV 201
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY-GLVMEVMLACGKYNLVYEFFRKVQKSYI 123
N + A ++ Q G P TY L++ G N F QK
Sbjct: 202 NGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQ 261
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N ++Y L++ L G+ +EA+ DM + Y L L +G+ EAL
Sbjct: 262 RNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNL 321
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+++ + +P V +YT LI + A + ++M + P++VT N ++ Y +
Sbjct: 322 FNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCK 381
Query: 243 HGLFEEAMKLFQEMAEDSNHIN-REYD-------KKGLVIPDIYTFNTMLDACAAEKRWD 294
G+ ++A ++ M +S N R Y+ KK V + N ML E++
Sbjct: 382 EGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKML-----ERKLS 436
Query: 295 DLELVYKRMLH 305
+ Y ++H
Sbjct: 437 PSLITYNSLIH 447
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 108/286 (37%), Gaps = 48/286 (16%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + G ++E+ DVI M + G L PD+V Y ++
Sbjct: 612 PDVCTYTAFLHAYFSQGMLEEVDDVIAKMN-------EEGIL--------PDLVTYTVLI 656
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM----------EVMLACG-------- 106
+ R AF L+ + G KPS +++ E G
Sbjct: 657 DGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVN 716
Query: 107 -----------KYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
+Y + + F K V+ + Y L+ ++ + +EA V M+
Sbjct: 717 SVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKE 776
Query: 155 RGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQN 214
RG+ S +Y L C C G EA+ +D + + PL+ SY L+ G+ +
Sbjct: 777 RGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEK 836
Query: 215 AAYIFNQMKNFCSPNL--VTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
A +F+ + + C N V +++ L+ L +E +L M E
Sbjct: 837 AKAVFHGLLS-CGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEE 881
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 87/211 (41%), Gaps = 12/211 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD+ Y A L+A + E V+ ++ ++G P TY ++++ G + ++
Sbjct: 611 QPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFD 670
Query: 114 FFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVS--AVEDMERRGIVGSAALYYDLARC 170
F + V P+ +L+ L E + E S ++ + V A ++ L
Sbjct: 671 FLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTL--- 727
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPN 229
+ E AL +K+ + V Y LI ++ A + + MK SP+
Sbjct: 728 -----EYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPS 782
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
N ++ + G++ EA++L M E+
Sbjct: 783 EDIYNSLLDCCCKLGVYAEAVRLVDAMVENG 813
>gi|357121540|ref|XP_003562477.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Brachypodium distachyon]
Length = 556
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 140/327 (42%), Gaps = 29/327 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y + L +AG I ++ V D M K+K G D+ Y+AV+
Sbjct: 216 PTVGTYTILVDGLSRAGDISKVEAVYDEM----KRKNVAG-----------DVYFYSAVI 260
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
NA R A V + G +P+ TYG ++ G+ +Q +
Sbjct: 261 NAYCRGGNVRRASEVFDECVGHGVEPNERTYGALINGFCKIGQIEAAEMLLADMQLRGVG 320
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + + +++ R G ++A+ ME+ GI Y LA LC + E+A
Sbjct: 321 HNQIVFNTMIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKL 380
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLE 242
+ + + P VSYT LI G++ A +F M+ S P++VT N+M+ Y++
Sbjct: 381 LHIMAEKGVAPNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIK 440
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+G EA + +EM +KKGLV PDIYT+ ++ + D +++
Sbjct: 441 NGSIREAERFKKEM-----------EKKGLV-PDIYTYAGLVHGHCVNGKVDVALRLFEE 488
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
M H G N + ++ ++ G+ E
Sbjct: 489 MKHRGTKPNVVAYTALVSGLAKEGRSE 515
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 1/171 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+E DI YN + R + E A +L + ++G P+ +Y ++ + G
Sbjct: 354 IELDIYTYNTLACGLCRVNRMEDAKKLLHIMAEKGVAPNYVSYTTLISIHAKEGDMVEAR 413
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
FR ++ K P+ + Y V+++ + G EA ++ME++G+V Y L
Sbjct: 414 RLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAERFKKEMEKKGLVPDIYTYAGLVHGH 473
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
C GK + AL +++ KP VV+YT L+ G + A +++ M
Sbjct: 474 CVNGKVDVALRLFEEMKHRGTKPNVVAYTALVSGLAKEGRSEEAFQLYDDM 524
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 12/206 (5%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG--KYNLVYEFF 115
+V+N +++ R E A + +++ G + TY LACG + N + +
Sbjct: 324 IVFNTMIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYN-----TLACGLCRVNRMEDAK 378
Query: 116 R----KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +K PN ++Y L++ +EG EA DME +G S Y +
Sbjct: 379 KLLHIMAEKGVAPNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGY 438
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNL 230
G EA ++ K P + +Y GL+ +G + A +F +MK+ + PN+
Sbjct: 439 IKNGSIREAERFKKEMEKKGLVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNV 498
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEM 256
V +V + G EEA +L+ +M
Sbjct: 499 VAYTALVSGLAKEGRSEEAFQLYDDM 524
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 1/152 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P+ V Y +++ + A + + ++ +G +PS TY ++++ + G
Sbjct: 389 VAPNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAE 448
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F ++++K +P+ Y LV+ GK D A+ E+M+ RG + Y L L
Sbjct: 449 RFKKEMEKKGLVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNVVAYTALVSGL 508
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLI 203
G+ EEA D + P Y+ L+
Sbjct: 509 AKEGRSEEAFQLYDDMLAAGLTPDDTLYSVLV 540
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 85/217 (39%), Gaps = 52/217 (23%)
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
NA Y L+++ R+ D +++ME RG+ + Y L L AG +
Sbjct: 182 NACCYNSLLDSYTRQRNDDAVAGLLKEMENRGVEPTVGTYTILVDGLSRAGDISKVEAVY 241
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ----------------MKNFC-- 226
D++ + V Y+ +I A GN++ A+ +F++ + FC
Sbjct: 242 DEMKRKNVAGDVYFYSAVINAYCRGGNVRRASEVFDECVGHGVEPNERTYGALINGFCKI 301
Query: 227 ------------------SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD 268
N + N M+ Y HG+ E+A+++ M +
Sbjct: 302 GQIEAAEMLLADMQLRGVGHNQIVFNTMIDGYCRHGMVEKALEIKAVM-----------E 350
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
K G+ + DIYT+NT+ R +D K++LH
Sbjct: 351 KMGIEL-DIYTYNTLACGLCRVNRMEDA----KKLLH 382
>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
Length = 1320
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 133/307 (43%), Gaps = 29/307 (9%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD V Y ++ + G++ + D MR +KK + PDIV Y +V
Sbjct: 344 FPDNVVYTTVISGFCKLGNVSAACKLFDEMR---RKK------------IVPDIVTYTSV 388
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSY 122
++ + + A + ++ +G +P TY +++ G+ + + VQK
Sbjct: 389 IHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGL 448
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN + Y L + L + G+ D A + +M R+G+ + Y + LC G E+ +
Sbjct: 449 TPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVK 508
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYL 241
M+++ P ++YT L+ A G + A + M N P LVT N+++ +
Sbjct: 509 LMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFC 568
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G+ E+ +L + M E KG ++P+ TFN+++ + +YK
Sbjct: 569 MSGMLEDGERLIEWMLE-----------KG-IMPNATTFNSLMKQYCIKNNMRATTEIYK 616
Query: 302 RMLHHGL 308
M G+
Sbjct: 617 AMHDRGV 623
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 14/236 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD +YN ++ + + A +L+ +++ G P Y V+ G +
Sbjct: 308 LKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAAC 367
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F ++ +K +P+ + Y +++ + + GK EA +M +G+ Y L
Sbjct: 368 KLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGY 427
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C AG+ +EA +++ + P VV+YT L +G I A + ++M + PN+
Sbjct: 428 CKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNV 487
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
T N +V + G E+ +KL +EM D G PD T+ T++DA
Sbjct: 488 YTYNTIVNGLCKIGNIEQTVKLMEEM-----------DLAGFY-PDTITYTTLMDA 531
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 111/234 (47%), Gaps = 14/234 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V Y V++ R + + ++ +LK +G KP Y ++ ++ G+ +
Sbjct: 275 PDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQL 334
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
R ++K P+ + Y +++ + G A ++M R+ IV Y + +C
Sbjct: 335 LRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICK 394
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+GK EA +++ +P V+YT LI +G ++ A + NQM + +PN+VT
Sbjct: 395 SGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVT 454
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+ ++G + A +L EM+ +KGL P++YT+NT+++
Sbjct: 455 YTALADGLCKNGEIDVANELLHEMS-----------RKGLQ-PNVYTYNTIVNG 496
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 126/318 (39%), Gaps = 37/318 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTL------ 46
PD V Y ++ +AG +KE F V + M +L K G +
Sbjct: 415 PDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANEL 474
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E L+P++ YN ++N + E +++++ G P TY +M+
Sbjct: 475 LHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCK 534
Query: 105 CGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ +E R + K P + + VL+N G ++ +E M +GI+ +A
Sbjct: 535 MGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATT 594
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
+ L + C + P +Y LI+ + N++ A ++ +M
Sbjct: 595 FNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMV 654
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI-PDIYTFN 281
+ S T + +++ + + F EA KLF+EM K GLV DIY +
Sbjct: 655 EKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMR-----------KHGLVAEKDIY--D 701
Query: 282 TMLDACAAEKRWD-DLEL 298
+D E W+ LEL
Sbjct: 702 IFVDVNYEEGNWEITLEL 719
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 111/271 (40%), Gaps = 14/271 (5%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ- 119
N VL+ + + A +L Q+ +G P +YG+V+ G+ + V + +++
Sbjct: 246 NIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKG 305
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K P+ Y ++ L + G+ EA + M + G+ +Y + C G
Sbjct: 306 KGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSA 365
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A D++ + P +V+YT +I SG + A +FN+M P+ VT ++
Sbjct: 366 ACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALID 425
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
Y + G +EA + +M + KGL P++ T+ + D D
Sbjct: 426 GYCKAGEMKEAFSVHNQMVQ-----------KGLT-PNVVTYTALADGLCKNGEIDVANE 473
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ M GL N + ++ + G +E
Sbjct: 474 LLHEMSRKGLQPNVYTYNTIVNGLCKIGNIE 504
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 76/197 (38%), Gaps = 51/197 (25%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPDT+ Y ++ + G + + +++ M + RL+P +V +N +
Sbjct: 519 YPDTITYTTLMDAYCKMGEMAKAHELLRIML---------------NKRLQPTLVTFNVL 563
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME----------------------V 101
+N E +++ + ++G P+ATT+ +M+ V
Sbjct: 564 MNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGV 623
Query: 102 MLACGKYNLVYE------------FFRK--VQKSYIPNALAYKVLVNTLWREGKTDEAVS 147
M YN++ + F K V+K Y A Y L+ ++ K EA
Sbjct: 624 MPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARK 683
Query: 148 AVEDMERRGIVGSAALY 164
E+M + G+V +Y
Sbjct: 684 LFEEMRKHGLVAEKDIY 700
>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera]
gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/365 (23%), Positives = 152/365 (41%), Gaps = 56/365 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS----------------LPKKK-------F 41
P V Y ++ + G I + F+++D M S L KK+
Sbjct: 367 PSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMAL 426
Query: 42 KTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
LER +L P ++ YN++++ + E A+ +L + + G P TY + ++
Sbjct: 427 LNKMLER---KLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDT 483
Query: 102 MLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ G+ F V+ K N + Y L++ + GK D A S +E M + +
Sbjct: 484 LCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPN 543
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
+ Y L LC K +EA + K+ + KP VV+YT LI L G +A +FN
Sbjct: 544 SYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFN 603
Query: 221 QMKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
M + P++ T + AY G+ EE + +M E+ ++PD+ T
Sbjct: 604 HMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEG------------ILPDLVT 651
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
+ ++D Y R+ GL A L+ ++D + ++ I ++L+
Sbjct: 652 YTVLIDG-------------YARL---GLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLS 695
Query: 340 RADRI 344
+R+
Sbjct: 696 HENRM 700
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/364 (21%), Positives = 143/364 (39%), Gaps = 54/364 (14%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD Y +++ R K + A+ V + Q+G + + +Y ++ + G+ N
Sbjct: 225 LHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEAL 284
Query: 113 EFF--------------------------RKVQ----------KSYIPNALAYKVLVNTL 136
+ F RKV+ K PN Y VL++ L
Sbjct: 285 KLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGL 344
Query: 137 WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV 196
+E K DEA + +M +G++ S Y L C G ++A +D + + P
Sbjct: 345 CKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNT 404
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
+Y LI + A + N+M + SP+L+T N ++ + E A +L
Sbjct: 405 RTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSL 464
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
M E+ ++PD +T++ +D E R ++ ++ + G+ N +
Sbjct: 465 MNENG------------LVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIY 512
Query: 316 LRMILDASRAGKVE----LLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLV 371
+I + GK++ LLE + T LI E C + K+ S ++ ++
Sbjct: 513 TALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLI-EGLCKEKKMKEASSLVAKML 571
Query: 372 SHPV 375
+ V
Sbjct: 572 TMGV 575
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/328 (19%), Positives = 136/328 (41%), Gaps = 40/328 (12%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+ V+Y ++ L +AG I E + M + P + Y ++
Sbjct: 263 NEVSYTNLIHGLCEAGRINEALKLFADMT---------------EDNCCPTVRTYTVLIY 307
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIP 124
A + A + ++K++G +P+ TY ++++ + K + + ++ +K IP
Sbjct: 308 ALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIP 367
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ + Y L++ +EG D+A ++ ME + Y +L LC K +A+ +
Sbjct: 368 SVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALL 427
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
+K+ + P +++Y LI ++++A + + M +N P+ T ++ + +
Sbjct: 428 NKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKE 487
Query: 244 GLFEEAMKLFQEMAEDSNHINR--------EYDKKGLV---------------IPDIYTF 280
G EEA LF + N Y K G + +P+ YT+
Sbjct: 488 GRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTY 547
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGL 308
N +++ EK+ + + +ML G+
Sbjct: 548 NVLIEGLCKEKKMKEASSLVAKMLTMGV 575
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 116/268 (43%), Gaps = 18/268 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y +I ++L + F +ID M KT LE + ++ P+I +NA++
Sbjct: 157 PTLRCYNTILMSLSK-------FLLIDEM--------KTVYLELLNNQISPNIYTFNAMV 201
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY-GLVMEVMLACGKYNLVYEFFRKVQKSYI 123
N + A ++ Q G P TY L++ G N F QK
Sbjct: 202 NGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQ 261
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N ++Y L++ L G+ +EA+ DM + Y L L +G+ EAL
Sbjct: 262 RNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNL 321
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+++ + +P V +YT LI + A + ++M + P++VT N ++ Y +
Sbjct: 322 FNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCK 381
Query: 243 HGLFEEAMKLFQEMAEDSNHIN-REYDK 269
G+ ++A ++ M +S N R Y++
Sbjct: 382 EGMIDDAFEILDLMESNSCGPNTRTYNE 409
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 108/275 (39%), Gaps = 37/275 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + G ++E+ DVI M + G L PD+V Y ++
Sbjct: 612 PDVCTYTAFLHAYFSQGMLEEVDDVIAKMN-------EEGIL--------PDLVTYTVLI 656
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM--------------EVMLACGKYNL 110
+ R AF L+ + G KPS +++ E+ + L
Sbjct: 657 DGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTL 716
Query: 111 VYE-----FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
YE F + V+ + Y L+ ++ + +EA V M+ RG+ S +Y
Sbjct: 717 EYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYN 776
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
L C C G EA+ +D + + PL+ SY L+ G+ + A +F+ + +
Sbjct: 777 SLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLS- 835
Query: 226 CSPNL--VTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
C N V +++ L+ L +E +L M E
Sbjct: 836 CGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEE 870
>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Vitis vinifera]
Length = 835
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 130/280 (46%), Gaps = 16/280 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
LEP+++ Y +++A + + E A ++ ++ + P TY +M + GK
Sbjct: 83 LEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAK 142
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
FR++++ +PN +Y L+++L++EG EA M RGI +Y L L
Sbjct: 143 SVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGL 202
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
AG A + + + P V+Y+ LI G++ + +M + PN+
Sbjct: 203 FKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNV 262
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAA 289
+ + +V Y + GL EAM + ++M + + ++P+++ + T++D A
Sbjct: 263 IVYSSIVDGYTKKGLLNEAMDVMRKMVQRN------------ILPNVFVYGTLIDGYFKA 310
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++R L+L +K M GL N + + R+G++E
Sbjct: 311 DQRGIALDL-FKEMKSRGLEENNFVIDSFVNNLKRSGRME 349
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/353 (20%), Positives = 148/353 (41%), Gaps = 34/353 (9%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ + Y SI + G + E DV MR + ++ + P++ VY +
Sbjct: 259 FPNVIVYSSIVDGYTKKGLLNEAMDV---MRKMVQR------------NILPNVFVYGTL 303
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSY 122
++ + Q A + +++K +G + + + + G+ E F+ + +
Sbjct: 304 IDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGL 363
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P+ + Y +++ ++ GK +A + ++M + Y L L GK E
Sbjct: 364 LPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESF 423
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYL 241
+ ++ P ++ +I A GN+ NA + N+MK++ PN +TCNI+V+
Sbjct: 424 HTG-MRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLC 482
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G E+ M L +M H P T +LDA + +R D + ++
Sbjct: 483 AAGEIEKTMDLLNDMLVMGFH------------PTPTTHKAVLDASSKSRRADVILHMHD 530
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR----ADRITPPALI 350
+++ G+ + + +I R G + + ++ + AD IT ALI
Sbjct: 531 QLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALI 583
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 126/279 (45%), Gaps = 16/279 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + + P+++VY+++++ ++ A V++++ Q+ P+ YG +++
Sbjct: 252 EMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKAD 311
Query: 107 KYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ + + F++++ + N VN L R G+ +EA +DM RG++ Y
Sbjct: 312 QRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYT 371
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+ AGK +A ++ + ++ VV+Y LI G ++ ++ +
Sbjct: 372 SMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLG 431
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
+P+ T N M+ AY + G A+KL EM + Y K P+ T N ++
Sbjct: 432 LAPDSATFNTMINAYCKEGNLGNALKLLNEM--------KSYGLK----PNSITCNILVQ 479
Query: 286 -ACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDAS 323
CAA + ++L+ ML G H H + +LDAS
Sbjct: 480 RLCAAGEIEKTMDLL-NDMLVMGFHPTPTTH-KAVLDAS 516
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 17/227 (7%)
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
+ VL++ R G+ AV +E M+ G Y L C G A M +I
Sbjct: 20 FNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEIS 79
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFE 247
V +P V++YT LI A S +++A Y++++M P++VT ++ + G E
Sbjct: 80 LVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVE 139
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
EA +F+EM E V+P+ +++ T++D+ E + ++ RM+ G
Sbjct: 140 EAKSVFREMEEVG------------VVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRG 187
Query: 308 LHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPALI 350
+ F+ + ++ +AG ++ ++ E + +T ALI
Sbjct: 188 IGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALI 234
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/347 (20%), Positives = 142/347 (40%), Gaps = 35/347 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLER---- 48
P+ +Y ++ +L + G++ E F + M +L FK G
Sbjct: 155 PNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDM 214
Query: 49 ----WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ L P+ V Y+A+++ + +LQ+++++ P+ Y +++
Sbjct: 215 FQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTK 274
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G N + RK VQ++ +PN Y L++ ++ + A+ ++M+ RG+ + +
Sbjct: 275 KGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFV 334
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
L +G+ EEA + P V+YT ++ +G +A I +M
Sbjct: 335 IDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMT 394
Query: 224 NFCSP-NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
S ++V N+++ + G +E S + + GL PD TFNT
Sbjct: 395 EKSSGFDVVAYNVLINGLFKLGKYE------------SESFHTGMRQLGLA-PDSATFNT 441
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
M++A E + + M +GL N+ ++ AG++E
Sbjct: 442 MINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIE 488
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/367 (21%), Positives = 134/367 (36%), Gaps = 68/367 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLERWDPR 52
PD V Y S+ +AG + F++ M L FK G E
Sbjct: 365 PDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFH 424
Query: 53 -------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
L PD +N ++NA + A +L ++K G KP++ T ++++ + A
Sbjct: 425 TGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAA 484
Query: 106 GKYNLVYEFFRKV-------------------QKSYIPNAL-----------------AY 129
G+ + + KS + + Y
Sbjct: 485 GEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTY 544
Query: 130 KVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK 189
L++T R G A +DM +GI+ Y L C + ++A ++
Sbjct: 545 NTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLT 604
Query: 190 VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEE 248
P V +Y L+ + I+ AA + NQMK PN T +I+V + + G +E
Sbjct: 605 EGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKE 664
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+KL+ EM KG V P T+N ++ A K+ + + + M G+
Sbjct: 665 CVKLYCEMI-----------TKGFV-PKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGI 712
Query: 309 HFNAKRH 315
N+ +
Sbjct: 713 PPNSSTY 719
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/296 (18%), Positives = 123/296 (41%), Gaps = 24/296 (8%)
Query: 29 VIDSMRSLPKKKFKTGTLERWDP--------RLEPDIVVYNAVLNACVRRKQWEGAFWVL 80
VIDS + K+ +G +E D L PD V Y ++++ + + AF +
Sbjct: 334 VIDSFVNNLKR---SGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIA 390
Query: 81 QQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREG 140
Q++ ++ Y +++ + GKY Q P++ + ++N +EG
Sbjct: 391 QEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFNTMINAYCKEG 450
Query: 141 KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYT 200
A+ + +M+ G+ ++ L + LC+AG+ E+ + ++ + + P ++
Sbjct: 451 NLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHK 510
Query: 201 GLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
++ A S ++ +Q+ +L T N ++ + G+ A +F++M
Sbjct: 511 AVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMM-- 568
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
KG ++ DI T+N ++ V+ +ML G+ N + +
Sbjct: 569 ---------GKG-ILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETY 614
>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Brachypodium distachyon]
Length = 904
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 118/254 (46%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P A+R I AG +K +++D MR ++G P ++ YNA++
Sbjct: 547 PSNRAFRPIIEGFAVAGDMKRALNILDLMR-------RSGCA--------PTVMTYNALI 591
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ +++ Q E A VL ++ G P+ TY ++M A G +E+F K+++ +
Sbjct: 592 HGLIKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLK 651
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ Y+ L+ + G+ A++ +M + I + +Y L G EA
Sbjct: 652 LDVYIYETLLRACCKSGRMQSALAVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADL 711
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
M ++ + P + +YT I AC +G++Q A + +M + PNL T ++K + +
Sbjct: 712 MKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEMADVGLKPNLKTYTTLIKGWAK 771
Query: 243 HGLFEEAMKLFQEM 256
L + A+K F+EM
Sbjct: 772 ASLPDRALKSFEEM 785
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 121/275 (44%), Gaps = 14/275 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD +YN ++ A + + A +L++++++ +PS + ++E G
Sbjct: 510 LQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRAL 569
Query: 113 EFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+++S P + Y L++ L ++ + + AVS + M GI + Y + R
Sbjct: 570 NILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGY 629
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
+ G +A KI + K V Y L++AC SG +Q+A + +M + N
Sbjct: 630 AANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQKIARNT 689
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
NI++ + G EA L ++M ED V P+I+T+ + ++AC
Sbjct: 690 FVYNILIDGWARRGDVWEAADLMKQMKEDG------------VPPNIHTYTSYINACCKA 737
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRA 325
+ V + M GL N K + +I ++A
Sbjct: 738 GDMQRAQKVIEEMADVGLKPNLKTYTTLIKGWAKA 772
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 111/251 (44%), Gaps = 14/251 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P I+ Y ++N ++ + A + ++++ G K + TY +++ + + +
Sbjct: 442 PSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFANAFSI 501
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F ++ KS + P+ Y +L+ + G D A+ +E M++ + S + +
Sbjct: 502 FEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAV 561
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVT 232
AG + AL +D + + P V++Y LI + ++ A + N+M +PN T
Sbjct: 562 AGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHT 621
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
I+++ Y +G +A + F ++ K+G + D+Y + T+L AC R
Sbjct: 622 YTIIMRGYAANGDIGKAFEYFTKI------------KEGGLKLDVYIYETLLRACCKSGR 669
Query: 293 WDDLELVYKRM 303
V + M
Sbjct: 670 MQSALAVTREM 680
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 1/165 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+ D+ +Y +L AC + + + A V +++ Q + Y ++++ G
Sbjct: 650 LKLDVYIYETLLRACCKSGRMQSALAVTREMSTQKIARNTFVYNILIDGWARRGDVWEAA 709
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +++++ +P N Y +N + G A +E+M G+ + Y L +
Sbjct: 710 DLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEMADVGLKPNLKTYTTLIKGW 769
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
A + AL +++ KP +Y L+ + L + +
Sbjct: 770 AKASLPDRALKSFEEMKLAGLKPDEAAYHCLVTSLLSRATVMEGS 814
>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Cucumis sativus]
Length = 749
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 116/264 (43%), Gaps = 14/264 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + + P++ YN ++ E ++++ G P+ TY +++
Sbjct: 193 EMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLR 252
Query: 107 KYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K ++ R + K PN ++Y V++N L REG+ E +E+M +R V +
Sbjct: 253 KIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFN 312
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN- 224
L C+ G +AL+ ++ K P VV+YT LI + +GN+ A +QM++
Sbjct: 313 TLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDR 372
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
PN T ++ + + G ++A ++ +EM E+ P I T+N ++
Sbjct: 373 GLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENG------------FTPTIITYNALI 420
Query: 285 DACAAEKRWDDLELVYKRMLHHGL 308
+ R +D + + M+ G
Sbjct: 421 NGHCILGRMEDASGLLQEMIERGF 444
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/343 (19%), Positives = 151/343 (44%), Gaps = 46/343 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ ++ +AG++ + +D MR D L P+ Y ++
Sbjct: 341 PNVVTYTTLINSMCKAGNLNRAMEFLDQMR---------------DRGLHPNGRTYTTLI 385
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ ++ + A+ +++++ + G P+ TY ++ G+ ++ +++ +I
Sbjct: 386 DGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFI 445
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++Y +++ R + ++A +M +GI A Y L + LC + E
Sbjct: 446 PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDL 505
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
++ + P V+YT LI A G++ A + ++M K F SP++VT N+++ +
Sbjct: 506 FQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGF-SPDIVTYNVLINGFN 564
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC-------------- 287
+ +EA +L ++ + + +P+ T+NT++D C
Sbjct: 565 KQSRTKEAKRLLLKLLYEES------------VPNEITYNTLIDNCNNLEFKSALALMKG 612
Query: 288 -AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ ++ + V + ML G N + + +I S+ G +E
Sbjct: 613 FCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIE 655
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/364 (21%), Positives = 151/364 (41%), Gaps = 37/364 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ ++Y + L + G +KE ++++ M R PD V +N ++
Sbjct: 271 PNLISYNVVINGLCREGQMKETSEILEEMSK---------------RRYVPDRVTFNTLI 315
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
N + A + ++ + G P+ TY ++ M G N EF +++ +
Sbjct: 316 NGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLH 375
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y L++ ++G +A +++M G + Y L C G+ E+A
Sbjct: 376 PNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGL 435
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ ++ + P VVSY+ +I + ++ A + +M SP++ T + +++ +
Sbjct: 436 LQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCK 495
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
E LFQEM GL PD T+ ++++A E D ++
Sbjct: 496 QRRLGEVCDLFQEML-----------SLGLP-PDEVTYTSLINAYCIEGDLDKALRLHDE 543
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE-----LLEITWEHLARADRITPPALIKERFCNR 357
M+ G + + +I ++ + + LL++ +E + + IT LI CN
Sbjct: 544 MIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEE-SVPNEITYNTLIDN--CNN 600
Query: 358 LENK 361
LE K
Sbjct: 601 LEFK 604
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 113/272 (41%), Gaps = 17/272 (6%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE--FFR 116
V++ V+ +C R A ++ K G P +Y +++ ++ + + E F
Sbjct: 134 VFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKE 193
Query: 117 KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
V+ PN Y +L+ G + + +MER G + + Y + C K
Sbjct: 194 MVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRK 253
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNI 235
EA + + P ++SY +I G ++ + I +M K P+ VT N
Sbjct: 254 IGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNT 313
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWD 294
++ Y G F +A+ L EM K GL P++ T+ T++++ C A
Sbjct: 314 LINGYCNVGNFHQALVLHAEMV-----------KNGLS-PNVVTYTTLINSMCKAGNLNR 361
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+E + +M GLH N + + +I S+ G
Sbjct: 362 AMEFL-DQMRDRGLHPNGRTYTTLIDGFSQQG 392
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 21/170 (12%)
Query: 194 PLVVSYTGLIQACLDSG-NIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMK 251
P V+SY ++ A + + +++ A IF +M ++ SPN+ T NI+++ + G E +
Sbjct: 165 PGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLX 224
Query: 252 LFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKRMLHHGLHF 310
F EM + +P++ T+NT++DA C K + +L+ + M GL+
Sbjct: 225 FFGEMERNG------------CLPNVVTYNTIIDAYCKLRKIGEAFKLL-RLMALKGLNP 271
Query: 311 NAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPALIKERFCN 356
N + +I R G++ E+LE + DR+T LI +CN
Sbjct: 272 NLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLIN-GYCN 320
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 89/237 (37%), Gaps = 39/237 (16%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSL--PKKKFKTGTL---------------- 46
PD Y S+ L + + E+ D+ M SL P + +L
Sbjct: 481 PDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRL 540
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME---- 100
E PDIV YN ++N ++ + + A +L +L + P+ TY +++
Sbjct: 541 HDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNN 600
Query: 101 --------VMLACGKYNLVYEFFR----KVQKSYIPNALAYKVLVNTLWREGKTDEAVSA 148
+M L+ E R +QK Y N Y V+++ + G ++A +
Sbjct: 601 LEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNL 660
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMD---KICKVANKPLVVSYTGL 202
++M G + LA+ L GK E +D K C++ L G+
Sbjct: 661 YKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGI 717
>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Brachypodium distachyon]
Length = 628
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 148/305 (48%), Gaps = 35/305 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKE---LFDVIDSMRSLP-------------KKKFKTGTLER 48
PDTV ++ LG+AG + + LF+ + +++ +P + K + +
Sbjct: 329 PDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISS 388
Query: 49 WDPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
W R++ P Y+ +++ + + E A +L+++ ++G P Y +++ +
Sbjct: 389 WFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALG 448
Query: 104 ACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+Y++ +E F++++++ +A Y V++ L + G+ D+AV+ ++M + G +
Sbjct: 449 KAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVY 508
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y L L AG +EAL M ++ + P + SY ++ +G A + + M
Sbjct: 509 AYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNM 568
Query: 223 K-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
K + P+ V+ N ++ A GLFEEA KL +EM N + EY D+ T++
Sbjct: 569 KQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEM----NVLGFEY--------DLITYS 616
Query: 282 TMLDA 286
++L+A
Sbjct: 617 SILEA 621
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/328 (21%), Positives = 152/328 (46%), Gaps = 29/328 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P AY S+ + L G +++ ++ + M + + PD V Y+A++
Sbjct: 188 PTAQAYNSMIIMLMHEGQYEKVHELYNEMSN--------------EGHCFPDTVTYSALI 233
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+A + + + A +L ++K G +P+A Y +++ + + F +++ Y
Sbjct: 234 SAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCR 293
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y L+ L + G+ DEA + +M R G + ++ L AG+ ++A+
Sbjct: 294 PDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKL 353
Query: 184 MDKICKVANKPLVVSYTGLIQACLDS-GNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYL 241
+++ + P VV+Y +I+A +S I + F +MK + SP+ T +I++ +
Sbjct: 354 FEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFC 413
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ E+AM L +EM D+KG P + +++DA KR+D +++
Sbjct: 414 KTNRTEKAMMLLEEM-----------DEKGFP-PCPAAYCSLIDALGKAKRYDIAHELFQ 461
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + +A+ + MI +AG+++
Sbjct: 462 ELKENCGSSSARVYAVMIKHLGKAGRLD 489
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 112/242 (46%), Gaps = 16/242 (6%)
Query: 71 KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV--QKSYIPNALA 128
K A + Q+K + +P+A Y ++ +++ G+Y V+E + ++ + P+ +
Sbjct: 169 KMISKAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVT 228
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
Y L++ + G+ D A+ + +M+ G+ +A +Y L AL +++
Sbjct: 229 YSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMR 288
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFE 247
+P V +YT LI+ +G A F++M + C P+ V N M+ + G +
Sbjct: 289 HQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLD 348
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK-RWDDLELVYKRMLHH 306
+A+KLF+EM IP + T+NT++ A K R ++ ++RM
Sbjct: 349 DAVKLFEEMGTLQ------------CIPSVVTYNTIIKALFESKSRISEISSWFERMKGS 396
Query: 307 GL 308
G+
Sbjct: 397 GI 398
>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g12100, mitochondrial; Flags: Precursor
gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 816
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 153/345 (44%), Gaps = 34/345 (9%)
Query: 37 PKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG 96
P+K FK + D +EP ++ +N +L + E A VL+++K G P A T+
Sbjct: 265 PEKSFKVRERMKAD-HIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFS 323
Query: 97 LVMEVMLACGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERR 155
++ + + K + S + NA +L+N L +EGK ++A + +
Sbjct: 324 ILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAK 383
Query: 156 GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA 215
G+V + +Y + C G A M+++ + K KP ++Y LI+ + G ++NA
Sbjct: 384 GLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENA 443
Query: 216 AYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN---------- 264
N+MK SP++ T NI++ Y F++ + +EM ++ N
Sbjct: 444 EKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINC 503
Query: 265 --------------REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHF 310
R+ + +G V P + +N ++D C ++ + +D K ML G+
Sbjct: 504 LCKGSKLLEAQIVKRDMEDRG-VSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIEL 562
Query: 311 NAKRHLRMILDASRAGKVE-----LLEITWEHLARADRITPPALI 350
N + +I S GK+ LLEI+ + L + D T +LI
Sbjct: 563 NLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGL-KPDVFTYNSLI 606
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/369 (22%), Positives = 160/369 (43%), Gaps = 43/369 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +AY + + G ++ ++ + + K K K + P + YN ++
Sbjct: 422 PDHLAYNCLIRRFCELGEME------NAEKEVNKMKLKG---------VSPSVETYNILI 466
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
R+ +++ F +L++++ G P+ +YG ++ + K R ++ +
Sbjct: 467 GGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVS 526
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P Y +L++ +GK ++A ++M ++GI + Y L L GK EA
Sbjct: 527 PKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDL 586
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ +I + KP V +Y LI +GN+Q ++ +MK + P L T ++++ +
Sbjct: 587 LLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTK 646
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G+ E +LF EM+ + PD+ +N +L A + + K+
Sbjct: 647 EGI-ELTERLFGEMS---------------LKPDLLVYNGVLHCYAVHGDMEKAFNLQKQ 690
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARADRITPPA----LIKERFCNR 357
M+ + + + +IL + GK+ E+ + E AR + P A +I + C
Sbjct: 691 MIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAR--EMEPEADTYNIIVKGHC-- 746
Query: 358 LENKDYGSA 366
E KDY SA
Sbjct: 747 -EVKDYMSA 754
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 111/246 (45%), Gaps = 26/246 (10%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PD + YN ++ + E A + ++K +G PS TY +++ G Y Y
Sbjct: 420 MKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILI------GGYGRKY 473
Query: 113 EF------FRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
EF ++++ + +PN ++Y L+N L + K EA DME RG+ +Y
Sbjct: 474 EFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYN 533
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KN 224
L CS GK E+A ++ K + +V+Y LI +G + A + ++ +
Sbjct: 534 MLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRK 593
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
P++ T N ++ Y G + + L++EM K+ + P + T++ ++
Sbjct: 594 GLKPDVFTYNSLISGYGFAGNVQRCIALYEEM------------KRSGIKPTLKTYHLLI 641
Query: 285 DACAAE 290
C E
Sbjct: 642 SLCTKE 647
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/310 (20%), Positives = 134/310 (43%), Gaps = 22/310 (7%)
Query: 37 PKKKFKTGTLERWDPRLEPDI--VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATT 94
PK+ F +L P L+ D ++ + +LN + F+ L + +G PS+ +
Sbjct: 92 PKELFSAFSLS--SPSLKHDFSYLLLSVLLNESKMISEAADLFFAL---RNEGIYPSSDS 146
Query: 95 YGLVMEVMLACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDME 153
L+++ ++ ++ + F + +S + P+ Y + + + + M+
Sbjct: 147 LTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMK 206
Query: 154 RRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQ 213
I S +Y L LC + +A D++ P +++Y LI +GN +
Sbjct: 207 HDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPE 266
Query: 214 NAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGL 272
+ + +MK + P+L+T N ++K + G+ E+A + +EM +
Sbjct: 267 KSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLG------------ 314
Query: 273 VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELL- 331
+PD +TF+ + D ++ ++ + VY+ + G+ NA ++ + GK+E
Sbjct: 315 FVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAE 374
Query: 332 EITWEHLARA 341
EI +A+
Sbjct: 375 EILGREMAKG 384
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 122/295 (41%), Gaps = 61/295 (20%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY- 108
D + P + +YN +++ C + + E AF +++ ++G + + TY +++ + GK
Sbjct: 522 DRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLS 581
Query: 109 ---NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+L+ E RK K P+ Y L++ G ++ E+M+R GI + Y+
Sbjct: 582 EAEDLLLEISRKGLK---PDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYH 638
Query: 166 DLARCLCSAGKCEEALMQMDKI-CKVANKPLVVSYTGLIQACLDSGNIQNA--------- 215
L LC+ +E + +++ +++ KP ++ Y G++ G+++ A
Sbjct: 639 -LLISLCT----KEGIELTERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIE 693
Query: 216 -----------AYIFNQMK--NFCS--------------PNLVTCNIMVKAYLEHGLFEE 248
+ I Q+K C P T NI+VK + E +
Sbjct: 694 KSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMS 753
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
A ++EM E KG ++ D+ N ++ E R + E+V M
Sbjct: 754 AYVWYREMQE-----------KGFLL-DVCIGNELVSGLKEEWRSKEAEIVISEM 796
>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
Length = 747
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 145/324 (44%), Gaps = 23/324 (7%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E ++ P++ YN ++ + A +++++G P+ TY +++
Sbjct: 195 EMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLR 254
Query: 107 KYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K + +E R + K PN ++Y V++N L REG+ E + +M +RG Y
Sbjct: 255 KIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYN 314
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--K 223
L + C G +AL+ ++ + P V++YT LI + +GN+ A +QM +
Sbjct: 315 TLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVR 374
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
C PN T +V + + G EA ++ +EM ++ P + T+N +
Sbjct: 375 GLC-PNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNG------------FSPSVVTYNAL 421
Query: 284 LDA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARA 341
++ C A K D + V + M GL + + ++ R+ V E L + + +A+
Sbjct: 422 INGHCIAGKMVDAIA-VLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKG 480
Query: 342 ---DRITPPALIKERFCNRLENKD 362
D IT +LI + FC + K+
Sbjct: 481 IKPDTITYSSLI-QGFCEQRRTKE 503
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 135/310 (43%), Gaps = 34/310 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTL------ 46
P+ ++Y + L + G +KE+ V+ M +L K K G
Sbjct: 273 PNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVM 332
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E L P ++ Y +++++ + A L Q++ +G P+ TY +++
Sbjct: 333 HAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQ 392
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G N Y ++ + + P+ + Y L+N GK +A++ +EDM+ +G+
Sbjct: 393 KGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVS 452
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y + C + +EAL K+ KP ++Y+ LIQ + + A +F++M
Sbjct: 453 YSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEML 512
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ P+ T ++ AY G ++A++L EM E KG V+PD+ T++
Sbjct: 513 RVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVE-----------KG-VLPDVVTYSV 560
Query: 283 MLDACAAEKR 292
+++ + R
Sbjct: 561 LINGLNKQAR 570
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 114/278 (41%), Gaps = 30/278 (10%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE---FF 115
V++ V+ + R + A ++ + G P +Y V++ + K N+ + F
Sbjct: 136 VFDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIR-SKRNISFAENVFK 194
Query: 116 RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
+Q PN Y +L+ G D A+ + ME++G + + Y L C
Sbjct: 195 EMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLR 254
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCN 234
K ++ + + +P ++SY +I G ++ +++ +M K S + VT N
Sbjct: 255 KIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYN 314
Query: 235 IMVKAYLEHGLFEEAMKLFQEM---------------------AEDSNHINREYDK---K 270
++K Y + G F +A+ + EM A + N D+ +
Sbjct: 315 TLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVR 374
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
GL P+ T+ T++D + + ++ V K M+ +G
Sbjct: 375 GLC-PNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGF 411
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 70/338 (20%), Positives = 130/338 (38%), Gaps = 47/338 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y ++ AG + + V++ M+ + L PD+V Y+ VL
Sbjct: 413 PSVVTYNALINGHCIAGKMVDAIAVLEDMK---------------EKGLTPDVVSYSTVL 457
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ R + A V +++ +G KP TY +++ + + F ++ + +P
Sbjct: 458 SGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLP 517
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ Y L+N EG +A+ +M +G++ Y L L + EA
Sbjct: 518 PDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRL 577
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
+ K+ + P V+Y LI+ C NI+ + + + +K FC
Sbjct: 578 LLKLFYEESVPSDVTYHTLIENC---SNIEFKS-VVSLIKGFCMK--------------- 618
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G+ EA ++F+ M E NH PD +N M+ +YK M
Sbjct: 619 GMMTEADQVFESMLE-KNH-----------KPDGTAYNVMIHGHCRGGDIRKAYSLYKEM 666
Query: 304 LHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
+ G + + ++ + GKV L ++ R+
Sbjct: 667 VKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANVLRS 704
>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Brachypodium distachyon]
Length = 676
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 87/376 (23%), Positives = 161/376 (42%), Gaps = 45/376 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS-----------------LPKKKFKTGT-- 45
PD ++R++ V + G ++E+ ++ M+ K +F+ +
Sbjct: 183 PDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDNATCTVIVRVFCQKGRFRDVSEL 242
Query: 46 ----LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
LE P P++V Y A ++ +R + AF+VL+++ +G KP+ T+ ++
Sbjct: 243 FRRMLEMGTP---PNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLING 299
Query: 102 MLACGKYNLVYEFFRKVQKS--YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+ G + F K+ KS Y PN Y V++ +EGK A + M +G+
Sbjct: 300 LCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAP 359
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219
+ Y L C G A M+K+ + +P + +Y LI G IQ A +
Sbjct: 360 NTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVL 419
Query: 220 NQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
N + VT +M+ + + G A+ LF MAE+ H PDI+
Sbjct: 420 RMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCH------------PDIH 467
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEIT 334
T+ T++ +++ ++ + ++ + L L + + MI + GK + + E
Sbjct: 468 TYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFERM 527
Query: 335 WEHLARADRITPPALI 350
++ +AD IT ALI
Sbjct: 528 VQNGCQADSITYGALI 543
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 84/379 (22%), Positives = 152/379 (40%), Gaps = 45/379 (11%)
Query: 9 AYRSIAVTLGQAGHIKELFDVIDSMRS--LP---------------------KKKFKTGT 45
A R + +AG + E D++ MRS LP +K G
Sbjct: 116 AMRRMVAAFAEAGRLPEAADMVFEMRSHGLPFCVETANWVLRAGLDTGSFAYARKVFDGM 175
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
+ R L PD + A++ C R + E +L ++ QG T +++ V
Sbjct: 176 VTRGG--LLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDNATCTVIVRVFCQK 233
Query: 106 GKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G++ V E FR+ ++ PN + Y ++ L + +A +E+M +G+ + +
Sbjct: 234 GRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTH 293
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
L LC G E A K+ K ++ KP V +YT +I G + A + +M
Sbjct: 294 TSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMV 353
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ +PN T ++ + + G F A +L +M + P+IYT+N
Sbjct: 354 EQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQ------------PNIYTYNA 401
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHL 338
++D + + + V + + GL + + MI + + G + +L E+
Sbjct: 402 LIDGLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENG 461
Query: 339 ARADRITPPALIKERFCNR 357
D T LI R+C +
Sbjct: 462 CHPDIHTYTTLIA-RYCQQ 479
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 86/206 (41%), Gaps = 2/206 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P+ Y +++ + + AF ++ +++++G +P+ TY +++ + GK Y
Sbjct: 357 LAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAY 416
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ R + + + Y V++ ++G A+ M G Y L
Sbjct: 417 KVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCHPDIHTYTTLIARY 476
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C + EE+ DK + P +YT +I G +A +F +M +N C +
Sbjct: 477 CQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADS 536
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEM 256
+T ++ + EEA L++ M
Sbjct: 537 ITYGALISGLCKESRLEEARALYEGM 562
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/232 (18%), Positives = 93/232 (40%), Gaps = 19/232 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T Y ++ + G F++++ MR ++ F +P+I YNA++
Sbjct: 359 PNTNTYTTLISGHCKEGSFNCAFELMNKMR---REGF------------QPNIYTYNALI 403
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYI 123
+ ++ + + A+ VL+ QG + TY +++ G + F R +
Sbjct: 404 DGLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCH 463
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y L+ ++ + +E+ + +V + Y + C GK AL
Sbjct: 464 PDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRV 523
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNI 235
+++ + + ++Y LI ++ A ++ M + LV C +
Sbjct: 524 FERMVQNGCQADSITYGALISGLCKESRLEEARALYEGMLD---KRLVPCEV 572
>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
gi|219887141|gb|ACL53945.1| unknown [Zea mays]
Length = 522
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 134/288 (46%), Gaps = 14/288 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P V+YN ++N + + GAF + +Q+K + +P TY ++ +
Sbjct: 187 LVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAE 246
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +++KS + P+ + L++ G+ ++ + + DM+++GI + + +
Sbjct: 247 DLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAF 306
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C GK EA+ +D + P Y +I A ++SG+ + A + +MKN S ++
Sbjct: 307 CKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASI 366
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N+++K +EA +L + +GL PD+ ++NT++ AC +
Sbjct: 367 VTYNLLLKGLCRSSQIDEAEELIYTLR-----------NQGLR-PDVVSYNTIISACCNK 414
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
D + + M +G+ + + ++ + AG+V +E ++ +
Sbjct: 415 GDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQM 462
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 124/306 (40%), Gaps = 29/306 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +Y + L ++G + V D M + G + W + YN ++
Sbjct: 14 PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDM-------GVVPNW--------ITYNTMI 58
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ V+ E F + Q+ G KP+ TY +++ + G+ + ++ S
Sbjct: 59 DGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMF 118
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y +L + L R G++ +S + ++G++ A L LC GK +A
Sbjct: 119 PDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQV 178
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
++ + P V Y LI +++ A IF QMK+ P+ +T N ++ +
Sbjct: 179 LEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCK 238
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ +A L EM +K V P + TFNT++DA + + V
Sbjct: 239 LEMVTKAEDLVMEM------------EKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSD 286
Query: 303 MLHHGL 308
M G+
Sbjct: 287 MQQKGI 292
>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 917
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 128/285 (44%), Gaps = 30/285 (10%)
Query: 5 PDTVAYRSIAVTLGQAG-HIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
P+ V Y ++ G+ G K++ D M+ ++PD + +N++
Sbjct: 301 PNLVTYNAVIDACGKGGMEFKQVAKFFDEMQR---------------NCVQPDRITFNSL 345
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSY 122
L C R WE A + ++ + + +Y +++ + G+ +L +E ++ K
Sbjct: 346 LAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRI 405
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+PN ++Y +++ + G+ DEA++ +M I Y L G+ EEAL
Sbjct: 406 MPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRSEEALD 465
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYL 241
+ ++ V K VV+Y L+ G +F +MK PNL+T + ++ Y
Sbjct: 466 ILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYS 525
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+ GL++EAM++F RE+ GL D+ ++ ++DA
Sbjct: 526 KGGLYKEAMEVF-----------REFKSAGLR-ADVVLYSALIDA 558
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 134/318 (42%), Gaps = 42/318 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V+Y ++ +AG E ++ MR L + D V YN +L
Sbjct: 407 PNVVSYSTVIDGFAKAGRFDEALNLFGEMRYL---------------NIALDRVSYNTLL 451
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + E A +L+++ G K TY ++ GKY+ V + F ++++ ++
Sbjct: 452 SIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVL 511
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN L Y L++ + G EA+ + + G+ LY L LC G A+
Sbjct: 512 PNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSL 571
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAA-YIFNQMKNFCSPNLVTCNIMVKAYLE 242
+D++ K P VV+Y +I A S ++ +A Y F S L + L
Sbjct: 572 IDEMTKEGISPNVVTYNSIIDAFGRSATMERSADYSNGGSLPFSSSAL--------SELT 623
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGL-----------------VIPDIYTFNTMLD 285
++LF ++ + N+ + K+G+ + P++ TF+ +L+
Sbjct: 624 ETEGNRVIQLFGQLTSEGNNRMTKDCKEGMQELSCILEVFRKMHQLEIKPNVVTFSAILN 683
Query: 286 ACAAEKRWDDLELVYKRM 303
AC+ ++D ++ + +
Sbjct: 684 ACSRCNSFEDASMLLEEL 701
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 14/192 (7%)
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
C K YEF K ++ +++TL R GK A E G + +
Sbjct: 212 CDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRIFETAFSGGYGNTVYAF 271
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG-NIQNAAYIFNQMK 223
L +G EEA+ + + + +P +V+Y +I AC G + A F++M+
Sbjct: 272 SALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQ 331
Query: 224 NFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
C P+ +T N ++ GL+E A LF EM+ NR ++ D++++NT
Sbjct: 332 RNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMS------NRRIEQ------DVFSYNT 379
Query: 283 MLDACAAEKRWD 294
+LDA + D
Sbjct: 380 LLDAICKGGQMD 391
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 100/225 (44%), Gaps = 29/225 (12%)
Query: 132 LVNTLWREGKTDEAVS----AVEDMERRGIVG--SAALYYDLARCLCSAGKCEEALMQMD 185
++ L G+ D+AV AV+ R+ G ++A+ L R GK A +
Sbjct: 202 IIRELGNRGECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRY----GKVTIAKRIFE 257
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHG 244
V +++ LI A SG + A +FN MK + PNLVT N ++ A + G
Sbjct: 258 TAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGG 317
Query: 245 L-FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
+ F++ K F EM ++ V PD TFN++L C+ W+ ++ M
Sbjct: 318 MEFKQVAKFFDEM------------QRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEM 365
Query: 304 LHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR--ADRITP 346
+ + + + ++ + G+++L +E LA+ A RI P
Sbjct: 366 SNRRIEQDVFSYNTLLDAICKGGQMDL---AFEILAQMPAKRIMP 407
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P++V ++A+LNAC R +E A +L++L+ K +GL+M G+ V+
Sbjct: 671 IKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLM------GQRENVW 724
Query: 113 ----EFFRKVQKSYIPNALA-YKVLVNTLWREGKTDEA-VSAVEDMERR 155
F KV + A A Y L + LW G+ A + A+E R+
Sbjct: 725 LQAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEGRSRQ 773
>gi|359481811|ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Vitis vinifera]
Length = 848
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 131/308 (42%), Gaps = 36/308 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFK-------TGTLERWDPRLE- 54
PD Y ++ G+AG + +++D M ++P + G+ W L
Sbjct: 195 PDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNV 254
Query: 55 ----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
PD+V +N VL+A R Q+ + +K +P TT +V+ ++
Sbjct: 255 CKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVK 314
Query: 105 CGKYNLVYEFFRKVQKSY---IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
G+ + F +++ P+ + + +++ G+ + +A M G+ +
Sbjct: 315 LGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNI 374
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L S G +EA ++I K P VVSYT L+ A SG + A +F
Sbjct: 375 VSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFEL 434
Query: 222 MK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
M+ N C PNLV+ N ++ AY GL EA+++ EM + V P+I +
Sbjct: 435 MRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNG------------VQPNIVSI 482
Query: 281 NTMLDACA 288
T+L AC
Sbjct: 483 CTLLAACG 490
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 117/245 (47%), Gaps = 18/245 (7%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
+++W R +PD YNA++NA R QW A ++ + + PS +TY ++ +
Sbjct: 188 MQKW--RCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSS 245
Query: 106 GKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G + +K+ ++ + P+ + + ++++ R + + +S E M+ I
Sbjct: 246 GNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTL 305
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANK--PLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+ CL G+ +A+ + + + ++ P VV++T +I G I+N FN M
Sbjct: 306 NIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTM 365
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
PN+V+ N ++ AY HG+ +EA +F E+ ++ H PD+ ++
Sbjct: 366 LAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFH------------PDVVSYT 413
Query: 282 TMLDA 286
++L+A
Sbjct: 414 SLLNA 418
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 133/301 (44%), Gaps = 29/301 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V+Y ++ G G + E +++ M + G ++P+IV +L
Sbjct: 442 PNLVSYNALIDAYGSKGLLTEAVEILHEME-------RNG--------VQPNIVSICTLL 486
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
AC R Q VL + +G K + T Y + L+ G+Y+ +R ++ K
Sbjct: 487 AACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVK 546
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y VL++ + K EA+ +++M I S +Y + G+ EA
Sbjct: 547 PDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESM 606
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
K+ V +P V++YT +I A + N + A+ +F +M+ + P+ + C+ +++A+ +
Sbjct: 607 FTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNK 666
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + + L + M E N +F M+ AC+ + W ++ + K
Sbjct: 667 GGQPAKVLVLAEFMREKKIPFNNS------------SFFEMVSACSLLREWREIIGLIKL 714
Query: 303 M 303
M
Sbjct: 715 M 715
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 28/249 (11%)
Query: 91 SATTYGLVMEVMLACGKYNLVYEFFR--KVQKSYIPNALAYKVLVNTLWREGKTDEAVSA 148
S + L++ + G + FR K QK+Y Y +++ R D+A
Sbjct: 125 SRKNFPLLIREITQIGSLEHSVQVFRWMKNQKNYCARNDIYNMMIRLHARHNIVDQARGL 184
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+M++ A Y L AG+ A+ MD + + A P +Y LI AC
Sbjct: 185 FFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGS 244
Query: 209 SGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ------------- 254
SGN + A + +M +N P+LVT NI++ AY + + + F+
Sbjct: 245 SGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTT 304
Query: 255 ---------EMAEDSNHI---NREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
++ ++ I N +K+ PD+ TF T++ + + ++ + +
Sbjct: 305 LNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNT 364
Query: 303 MLHHGLHFN 311
ML GL N
Sbjct: 365 MLAEGLKPN 373
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 116/290 (40%), Gaps = 24/290 (8%)
Query: 59 VYNAVLNACVRRK---QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
+YN ++ R Q G F+ +Q+ + KP A TY ++ G++
Sbjct: 164 IYNMMIRLHARHNIVDQARGLFFEMQKWRC---KPDAETYNALINAHGRAGQWRWAMNIM 220
Query: 116 RKVQKSYIPNALA-YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ ++ IP + + Y L+N G EA++ + M G VG + +++
Sbjct: 221 DDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENG-VGPDLVTHNIVLSAYKR 279
Query: 175 GKCEEALMQMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQMK---NFCSPNL 230
G ++ ++ K N +P + +I + G A IFN MK + C P++
Sbjct: 280 GNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDV 339
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT ++ Y G E F M + + P+I ++N ++ A A+
Sbjct: 340 VTFTTIIHLYSVCGQIENCQTAFNTMLAEG------------LKPNIVSYNALIGAYASH 387
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
+ V+ + +G H + + ++ ++GK E +E + R
Sbjct: 388 GMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRR 437
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 5/160 (3%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG---KYNLV 111
PD++ Y A+++A + WE A + +++ +P + +M G K ++
Sbjct: 617 PDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVL 676
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
EF R+ + + ++ V +L RE + E + ++ ME V S L L L
Sbjct: 677 AEFMREKKIPFNNSSFFEMVSACSLLREWR--EIIGLIKLMEPSISVVSIGLLNQLLHFL 734
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
+GK E + KI + +Y+ L++ L +GN
Sbjct: 735 GKSGKIETMMKLFYKIVASGAEINFYTYSILLKNLLAAGN 774
>gi|255660962|gb|ACU25650.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
Length = 376
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 138/286 (48%), Gaps = 15/286 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + ++ PD VVYNA+LN R + + F + + + +G + S +++ ++M + G
Sbjct: 15 EIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNG 73
Query: 107 KYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K + V + +++S ++ +++ Y +LV+ + G D+++ +E E++G V A Y
Sbjct: 74 KVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYS 133
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+ LC + AL ++ + K KP V Y LI + ++A +F +M
Sbjct: 134 AMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREMGTM 193
Query: 226 -CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
CSP ++T N ++ ++ +F EA L +E+ + KGL P + T++ ++
Sbjct: 194 HCSPTIITYNTLINGLCKNEMFGEAYNLVKELLD-----------KGLD-PGVITYSMLM 241
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ + + ++ ++ G + + H +I GK++L
Sbjct: 242 KGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKIQL 287
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 121/292 (41%), Gaps = 29/292 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D++ Y + + G+I + S+ L + K G L D Y+A++N
Sbjct: 93 DSITYGILVHGFCKNGYIDK------SLHVLEMAEQKGGVL---------DAFAYSAMIN 137
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ + A VL + + G KP+ Y ++ + K+ FR++ + P
Sbjct: 138 GLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREMGTMHCSP 197
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ Y L+N L + EA + V+++ +G+ Y L + LC K E AL
Sbjct: 198 TIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLW 257
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
+++ KP V + LI G IQ A ++ M + C+PNLV+ N +++ + +
Sbjct: 258 NQVTSKGFKPDVQMHNILIHGLCSVGKIQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKD 317
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
G A+ ++ + + + PDI ++N L + R D
Sbjct: 318 GDIRNALVIWARILRNG------------LEPDIISYNITLKGLCSCNRISD 357
Score = 44.7 bits (104), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/137 (18%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D L+P ++ Y+ ++ + E A + Q+ +G KP + +++ + + G
Sbjct: 224 ELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVG 283
Query: 107 KYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K L + + + PN +++ L+ +++G A+ + R G+ Y
Sbjct: 284 KIQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343
Query: 166 DLARCLCSAGKCEEALM 182
+ LCS + +A++
Sbjct: 344 ITLKGLCSCNRISDAIL 360
>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
Length = 953
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 98/407 (24%), Positives = 159/407 (39%), Gaps = 75/407 (18%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLERWDPRL 53
D V Y ++ LG+ G I+E DV+ S L + G ++ + L
Sbjct: 363 DLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQML 422
Query: 54 --------EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
P++V ++++LN V+R A ++++K G P+ TYG +++ C
Sbjct: 423 LQMEEKSVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKC 482
Query: 106 GKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI------- 157
+ +R + + N LVN L + G +EA + +DM RG+
Sbjct: 483 QGQEAALDVYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNY 542
Query: 158 ------------------VG----------SAALYYDLARCLCSAGKCEEALMQMDKICK 189
VG A +Y CLC GK EA + ++
Sbjct: 543 ATLMDGLFKTGNMPAALKVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRN 602
Query: 190 VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEE 248
+P +Y +I A GN A + N+MK + PNL+T +V LE G+ E+
Sbjct: 603 TGLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEK 662
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
A L EMA P T+ +L AC+ + + V++ M+ GL
Sbjct: 663 AKYLLNEMASAG------------FTPTPLTYRRVLQACSGSRSPYVILEVHELMMGAGL 710
Query: 309 H-----FNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
H +N H+ +R + L E+ +A D IT ALI
Sbjct: 711 HADITVYNTLVHVLCCHGMTRKATIVLDEMLGRGIA-PDTITFNALI 756
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 140/311 (45%), Gaps = 35/311 (11%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V Y ++ +G ++V + M++ +EP +V + ++
Sbjct: 223 DVVGYNTLVAGFFYSGDADAAWEVAERMKA---------------DGVEPSVVTHTTLIG 267
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ K+ E AF + + + + G P T +++ + G+++ Y FR++ K + P
Sbjct: 268 EYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAP 327
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N + Y +++L + + +E++ + +M RG+ +Y + L GK EEA +
Sbjct: 328 NHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVL 387
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
P V+YT L+ A +GNI A + QM + SPN+VT + ++ ++
Sbjct: 388 RHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKR 447
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA---CAAEKRWDDLELVY 300
G +A ++M +DS + P++ T+ T++D C ++ D VY
Sbjct: 448 GCIAKAAGYMRKM-KDSG-----------IAPNVVTYGTLIDGFFKCQGQEAALD---VY 492
Query: 301 KRMLHHGLHFN 311
+ MLH G+ N
Sbjct: 493 RDMLHEGVEAN 503
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/313 (20%), Positives = 128/313 (40%), Gaps = 49/313 (15%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+E + + ++++N + E A + + + ++G Y +M+ + G
Sbjct: 500 VEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAAL 559
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +++ +++ P+A+ Y V +N L R GK EA S +++M G+ A Y +
Sbjct: 560 KVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQ 619
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF------ 225
C G +AL ++++ + KP +++YT L+ L++G ++ A Y+ N+M +
Sbjct: 620 CREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTP 679
Query: 226 ---------CS---------------------PNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
CS ++ N +V HG+ +A + E
Sbjct: 680 LTYRRVLQACSGSRSPYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDE 739
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
M + R + PD TFN ++ D+ Y +MLH GL N
Sbjct: 740 M------LGRG------IAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATF 787
Query: 316 LRMILDASRAGKV 328
++ AG++
Sbjct: 788 NTLLGGLESAGRI 800
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/360 (18%), Positives = 154/360 (42%), Gaps = 38/360 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V + ++ + I+E F + + M ++G L PD+V +A++
Sbjct: 257 PSVVTHTTLIGEYCKMKRIEEAFTLYEGM-------VRSGVL--------PDVVTLSALV 301
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ R ++ A+ + +++ + G P+ TY ++ + + N + V +
Sbjct: 302 DGLCRDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVA 361
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK---CEEA 180
+ + Y +++ L +EGK +EA + I + Y L C AG E+
Sbjct: 362 MDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQM 421
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
L+QM+ + + P VV+++ ++ + G I AA +MK+ +PN+VT ++
Sbjct: 422 LLQME---EKSVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDG 478
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ + E A+ ++++M + N + +++++ ++ E +
Sbjct: 479 FFKCQGQEAALDVYRDMLHEGVEANN------------FIVDSLVNGLRKNGNIEEAEAL 526
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARADRITPPALIKERFCNRL 358
+K M GL + + ++ + G + L++ E + R ++P A++ F N L
Sbjct: 527 FKDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMER--NLSPDAVVYNVFINCL 584
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 68/161 (42%), Gaps = 16/161 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT+ + ++ + ++ H+ F M L P+I +N +L
Sbjct: 747 PDTITFNALILGHCKSSHLDNAFATYAQM---------------LHQGLSPNIATFNTLL 791
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYG-LVMEVMLACGKYNLVYEFFRKVQKSYI 123
+ A V+ ++K+ G +P+ TY LV K + + V K +I
Sbjct: 792 GGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFI 851
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
P A Y L++ + G ++A +M+RRG++ +++ Y
Sbjct: 852 PKASTYNSLISDFAKAGMMNQAKELFSEMKRRGVLHTSSTY 892
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 85/206 (41%), Gaps = 2/206 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PD + +NA++ + + AF Q+ QG P+ T+ ++ + + G+
Sbjct: 745 IAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGRIGEAD 804
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+++K + PN L Y +LV ++ EA+ +M +G + A+ Y L
Sbjct: 805 TVICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLISDF 864
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNL 230
AG +A ++ + +Y L+ N + MK P+
Sbjct: 865 AKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGTEVRILLKDMKELGFKPSK 924
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEM 256
T + M +A+ + G+ EA +L + +
Sbjct: 925 GTISSMSRAFSKPGMTWEARRLLKTL 950
Score = 38.1 bits (87), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 37/187 (19%), Positives = 73/187 (39%), Gaps = 16/187 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + ++ L AG I E VI M+ + LEP+ + Y+ ++
Sbjct: 782 PNIATFNTLLGGLESAGRIGEADTVICEMKKM---------------GLEPNNLTYDILV 826
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
++ A + ++ +G P A+TY ++ G N E F ++++ +
Sbjct: 827 TGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLISDFAKAGMMNQAKELFSEMKRRGVL 886
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ Y +L+N + E ++DM+ G S ++R G EA
Sbjct: 887 HTSSTYDILLNGWSKLRNGTEVRILLKDMKELGFKPSKGTISSMSRAFSKPGMTWEARRL 946
Query: 184 MDKICKV 190
+ + KV
Sbjct: 947 LKTLFKV 953
>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
Length = 545
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 126/279 (45%), Gaps = 25/279 (8%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLERW-- 49
YPD V Y ++ LG+ +KE +D+ + R ++ K G +E
Sbjct: 237 YPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALT 296
Query: 50 -------DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
+P L+PD+ Y+A++N + E A+ + +++ G P TY +++ +
Sbjct: 297 LYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGL 356
Query: 103 LACGKYNLVYEFFRKVQKSYI--PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
G + E FRK+ + PN + Y VL++ + + +AV ++ME R ++
Sbjct: 357 CKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPD 416
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
A + + + LC + +EA + I K KP V + ++ I +A + +
Sbjct: 417 AVTFTTVIQKLCKESRIDEAHELFESIGKTC-KPDSVLFNTMLAGYCKITRIDDAKKLHD 475
Query: 221 QM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
+M + C+P L T +V + G + +A+ ++ EM E
Sbjct: 476 RMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIE 514
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 128/283 (45%), Gaps = 19/283 (6%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY- 108
D + PD+V Y A+++ ++++ + A+ + ++ + +G P+ TY +++ + CG+
Sbjct: 233 DKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIE 292
Query: 109 NLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
N + + V++ ++ P+ Y L+N L + ++A E+M G Y L
Sbjct: 293 NALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTL 352
Query: 168 ARCLCSAGKCEEALMQMDKICKVAN--KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN- 224
LC +G CE+ M++ + V N P V++YT LI + +A + +M+
Sbjct: 353 LDGLCKSG-CEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGR 411
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
P+ VT +++ + +EA +LF+ + + PD FNTML
Sbjct: 412 SLLPDAVTFTTVIQKLCKESRIDEAHELFESIGKTCK-------------PDSVLFNTML 458
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
R DD + ++ RML G + ++ R G+
Sbjct: 459 AGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGR 501
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 114/253 (45%), Gaps = 15/253 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
EPD V YN ++N + + A + ++K G ++ +V+ + + GK ++ +
Sbjct: 133 FEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGIA-VLRSHNIVLRGLCSGGKISMAW 191
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
E F+ + + PN ++Y ++++ L + K D+A++ + M + I Y L L
Sbjct: 192 EVFKDMSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLG 251
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNL 230
+ +EA ++ P VV+Y +I G I+NA +++ M + P++
Sbjct: 252 KQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDM 311
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T + ++ E+A +L++EM + PD+ T+NT+LD
Sbjct: 312 FTYSALINGLNLSNRGEKAYELYEEMLDTG------------CSPDVVTYNTLLDGLCKS 359
Query: 291 KRWDDLELVYKRM 303
D ++++M
Sbjct: 360 GCEDKAMEIFRKM 372
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/225 (18%), Positives = 84/225 (37%), Gaps = 46/225 (20%)
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--------- 224
A + E+A + K +P VSY L+ +G+++ A +F +MK+
Sbjct: 115 ARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGIAVLRSH 174
Query: 225 ------FC-------------------SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
C SPNL++ IM+ + ++A+ LF++M +
Sbjct: 175 NIVLRGLCSGGKISMAWEVFKDMSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDK 234
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
+ + PD+ T+ ++D ++R + +++ G H + MI
Sbjct: 235 A------------IYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMI 282
Query: 320 LDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYG 364
+ G++E ++ + R + P N L + G
Sbjct: 283 DGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRG 327
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/190 (16%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ L ++G + ++ +K G + +P+++ Y ++
Sbjct: 344 PDVVTYNTLLDGLCKSGCEDKAMEIF--------RKMGVGNV------CDPNVITYTVLI 389
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + + A + ++++ + P A T+ V++ + + + +E F + K+ P
Sbjct: 390 DRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESIGKTCKP 449
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+++ + ++ + + D+A + M G + A Y L C G+ +AL+
Sbjct: 450 DSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMY 509
Query: 185 DKICKVANKP 194
++ ++ P
Sbjct: 510 HEMIEMGFPP 519
>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g11690-like [Glycine max]
Length = 556
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 140/318 (44%), Gaps = 43/318 (13%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P++V+Y +++ C + A + ++ + G P+ TY ++M G +
Sbjct: 189 LSPNVVIYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGF 248
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ + + +S I PNA AY L++ +G D+A +M +GI Y L L
Sbjct: 249 QMYENMNRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGL 308
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C K EA+ + K+ KV P +V+Y LI D G + A +FNQ+K+ SP L
Sbjct: 309 CRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTL 368
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDS------------------NHINRE------ 266
VT N ++ Y + A+ L +EM E N+ ++
Sbjct: 369 VTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDAFARLNYTDKACEMHSL 428
Query: 267 YDKKGLVIPDIYTFNTMLDA-CA------AEKRWDDL--------ELVYKRMLH-HGLHF 310
+K GLV PD+YT++ ++ C A K + L ++Y M+H +
Sbjct: 429 MEKSGLV-PDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCKEG 487
Query: 311 NAKRHLRMILDASRAGKV 328
++ R LR++ + +G V
Sbjct: 488 SSYRALRLLNEMVHSGMV 505
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/306 (21%), Positives = 125/306 (40%), Gaps = 29/306 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ AY + G + + F V MR +K G ++ YN ++
Sbjct: 261 PNAYAYNCLISEYCNDGMVDKAFKVFAEMR---EKGIACG------------VMTYNILI 305
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
R K++ A ++ ++ + G P+ TY +++ GK + F +++ S +
Sbjct: 306 GGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLS 365
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y L+ + A+ V++ME R I S Y L ++A
Sbjct: 366 PTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDAFARLNYTDKACEM 425
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ K P V +Y+ LI +GN++ A+ F + PN V N M+ Y +
Sbjct: 426 HSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCK 485
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G A++L EM ++P++ +F + + +++W + EL+ +
Sbjct: 486 EGSSYRALRLLNEMVHSG------------MVPNVASFCSTMGLLCRDEKWKEAELLLGQ 533
Query: 303 MLHHGL 308
M++ GL
Sbjct: 534 MINSGL 539
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/248 (19%), Positives = 107/248 (43%), Gaps = 20/248 (8%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
+Y+A++NA V + A L + +G P + T+ ++ +++ ++ + F +
Sbjct: 91 LYDAIVNAYVHSHSTDQALTFLHHMIHEGHAPLSNTFNNLLCLLIRSNYFDKAWWIFNVL 150
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ + NA ++ +++ G + +E G+ + +Y L C G
Sbjct: 151 KSKVVLNAYSFGIMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDGCCKNGDVM 210
Query: 179 EA---LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCN 234
A +MD++ V N+ +Y+ L+ G + ++ M ++ PN N
Sbjct: 211 LAKNLFCKMDRLGLVPNQH---TYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYN 267
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRW 293
++ Y G+ ++A K+F EM E KG+ + T+N ++ C +K
Sbjct: 268 CLISEYCNDGMVDKAFKVFAEMRE-----------KGIAC-GVMTYNILIGGLCRGKKFG 315
Query: 294 DDLELVYK 301
+ ++LV+K
Sbjct: 316 EAVKLVHK 323
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/196 (19%), Positives = 81/196 (41%), Gaps = 16/196 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y ++ + ++ D++ M ER R + V Y ++
Sbjct: 366 PTLVTYNTLIAGYSKVENLAGALDLVKEME------------ERCIARSK---VTYTILI 410
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+A R + A + +++ G P TY +++ G + F+ + + ++
Sbjct: 411 DAFARLNYTDKACEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQ 470
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN++ Y +++ +EG + A+ + +M G+V + A + LC K +EA +
Sbjct: 471 PNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTMGLLCRDEKWKEAELL 530
Query: 184 MDKICKVANKPLVVSY 199
+ ++ KP V Y
Sbjct: 531 LGQMINSGLKPSVSLY 546
>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 839
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/350 (23%), Positives = 152/350 (43%), Gaps = 42/350 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT Y S+ + + G++ F++ D M K G +P+ V Y+A++
Sbjct: 235 PDTFTYTSLIIGHCKNGNLDLAFEMFDRM-------VKDGC--------DPNSVTYSALI 279
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + E A +L+++ +G +P+ Y + + + G+ + K++K
Sbjct: 280 NGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCG 339
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y L++ L R+GK + A+ M G+V +A Y L L G+ E AL
Sbjct: 340 PNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTI 399
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + + P +Y +I+ G IQ A IF+QM K SPN++T NI++ Y +
Sbjct: 400 FEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFK 459
Query: 243 HGLFEEAMKLFQEMA------------------------EDSNHINREYDKKGLVIPDIY 278
G AM+L + M E + + E + G + P++
Sbjct: 460 QGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHG-ISPNVV 518
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
T+N +++ + DD ++ +M+ G ++ + MI S+ ++
Sbjct: 519 TYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRI 568
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 145/334 (43%), Gaps = 29/334 (8%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
+E + + P++ +NA++ + + + A ++ + G P TY ++
Sbjct: 191 IEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKN 250
Query: 106 GKYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G +L +E F R V+ PN++ Y L+N L EG+ +EA+ +E+M +GI + Y
Sbjct: 251 GNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAY 310
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-K 223
LC AG+ EA+ + K+ K P V +YT LI G + A ++++M
Sbjct: 311 TIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLA 370
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE-------------YDKK 270
+ P VT + ++ G FE A+ +F+ M + N E Y +K
Sbjct: 371 DGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQK 430
Query: 271 GLVI----------PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMIL 320
I P++ T+N ++ + ++ + + M +GL + + +I
Sbjct: 431 ATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLIS 490
Query: 321 DASRAGKVE----LLEITWEHLARADRITPPALI 350
SR GK+E L EH + +T A+I
Sbjct: 491 GFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAII 524
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 132/331 (39%), Gaps = 37/331 (11%)
Query: 3 SYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNA 62
S P+T Y I G+I++ + D M K G P+++ YN
Sbjct: 408 SLPNTETYNVIIKGFCSIGYIQKATAIFDQM-------LKAGP--------SPNVITYNI 452
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKS 121
+++ ++ A +L+ +K G K TY ++ GK + F + V+
Sbjct: 453 IIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHG 512
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
PN + Y ++N K D+A++ M G V S+ Y + + EA
Sbjct: 513 ISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAE 572
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN---FCSPNLVTCNIMVK 238
K+ K P V++YT I +G A IF++MK F PNL T + ++
Sbjct: 573 NFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYF--PNLCTYSSLID 630
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G E+A +L + E P++ T+ T++ + R + +
Sbjct: 631 GLCQEGQAEDAERLLDDGCE----------------PNVDTYTTLVRGLCGKGRCYEADQ 674
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + M GL + + + +++ + +VE
Sbjct: 675 LVESMKKKGLQPSEEIYRALLVGQCKNLEVE 705
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/288 (20%), Positives = 116/288 (40%), Gaps = 56/288 (19%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
DT Y ++ + G ++ F + + M + + P++V YNA++N
Sbjct: 481 DTWTYANLISGFSRGGKLEHAFSLFNEM---------------VEHGISPNVVTYNAIIN 525
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM----------EVMLACGKY------- 108
+ + + A + ++ + G PS+ TY +++ E CGK
Sbjct: 526 GYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLP 585
Query: 109 ------------------NLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAV 149
+L ++ F +++K Y PN Y L++ L +EG+ ++A +
Sbjct: 586 NVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLL 645
Query: 150 EDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS 209
+D G + Y L R LC G+C EA ++ + K +P Y L+ +
Sbjct: 646 DD----GCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKN 701
Query: 210 GNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+++A IF+ M P L ++ A + ++A +FQ M
Sbjct: 702 LEVESALKIFDSMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTM 749
>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 529
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 133/311 (42%), Gaps = 29/311 (9%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD + Y ++ G + F ++D M + P + +YN +
Sbjct: 182 FPDAITYTTLIYGFCLLGQLMGAFSLLDEM---------------ILKNINPGVYIYNIL 226
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSY 122
+NA + + A +L + ++G KP TY +M+ G+ + F VQ
Sbjct: 227 INALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGV 286
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN +Y +++N L + + DEA++ + +M + +V Y L LC +G+ AL
Sbjct: 287 NPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALN 346
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYL 241
M+++ VV+YT L+ A + N+ A +F +MK P + T ++
Sbjct: 347 LMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLC 406
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G + A +LFQ + KG I D++T+ M+ E +D+ +
Sbjct: 407 KGGRLKNAQELFQHLLV-----------KGCCI-DVWTYTVMISGLCKEGMFDEALAIKS 454
Query: 302 RMLHHGLHFNA 312
+M +G NA
Sbjct: 455 KMEDNGCIPNA 465
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 127/305 (41%), Gaps = 29/305 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT+ ++ L G +K+ D + + + D V Y +L
Sbjct: 78 PDTITLNTLMKGLCLKGEVKKSLHFHDKVVA---------------QGFQMDHVSYGTLL 122
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
N + + A +L+ ++ + +P+ Y +++ + N Y+ + ++ +
Sbjct: 123 NGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIF 182
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+A+ Y L+ G+ A S +++M + I +Y L LC G +EA
Sbjct: 183 PDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNL 242
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ + K KP VV+Y+ L+ G +QNA IF+ M +PN+ + NIM+ +
Sbjct: 243 LAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCK 302
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+EAM L +EM + ++PD T+N+++D R +
Sbjct: 303 CKRVDEAMNLLREMLHKN------------MVPDTVTYNSLIDGLCKSGRITSALNLMNE 350
Query: 303 MLHHG 307
M H G
Sbjct: 351 MHHRG 355
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/292 (20%), Positives = 118/292 (40%), Gaps = 16/292 (5%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D P++V+YN +++ + K A+ + ++ +G P A TY ++ G+
Sbjct: 143 DRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLM 202
Query: 110 LVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
+ + + K+ P Y +L+N L +EG EA + + M + GI Y L
Sbjct: 203 GAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLM 262
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFC 226
C G+ + A + ++ P V SY +I + A + +M KN
Sbjct: 263 DGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMV 322
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
P+ VT N ++ + G A+ L EM D+ T+ ++LDA
Sbjct: 323 -PDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQP------------ADVVTYTSLLDA 369
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
+ D ++ +M G+ + +I + G+++ + ++HL
Sbjct: 370 LCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHL 421
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 77/356 (21%), Positives = 141/356 (39%), Gaps = 55/356 (15%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ + V N ++N Q +F VL ++ + G +P T +M+ + G+
Sbjct: 41 IRANFVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSL 100
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKT----------------------------- 142
F KV + + + ++Y L+N L + G+T
Sbjct: 101 HFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGL 160
Query: 143 ------DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV 196
+EA +M+ RGI A Y L C G+ A +D++ P V
Sbjct: 161 CKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGV 220
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
Y LI A GN++ A + M K P +VT + ++ Y G + A ++F
Sbjct: 221 YIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHA 280
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
M + V P++Y++N M++ KR D+ + + MLH + + +
Sbjct: 281 MVQMG------------VNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTY 328
Query: 316 LRMILDASRAGKV-ELLEITWEHLAR---ADRITPPALIKERFCNRLENKDYGSAI 367
+I ++G++ L + E R AD +T +L+ + C +N D +A+
Sbjct: 329 NSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLL-DALCKN-QNLDKATAL 382
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV Y S+ L ++G I ++++ M R P D+V Y ++L
Sbjct: 323 PDTVTYNSLIDGLCKSGRITSALNLMNEMH------------HRGQP---ADVVTYTSLL 367
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+A + + + A + ++K++G +P+ TY +++ + G+ E F+ + K
Sbjct: 368 DALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCC 427
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ Y V+++ L +EG DEA++ ME G + +A + + R L
Sbjct: 428 IDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSL 475
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 80/213 (37%), Gaps = 39/213 (18%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + PD V YN++++ + + A ++ ++ +GQ TY +++ + C
Sbjct: 315 EMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDAL--CK 372
Query: 107 KYNL--VYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
NL F K+++ I P Y L++ L + G+ A + + +G
Sbjct: 373 NQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWT 432
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + LC G +EAL K+
Sbjct: 433 YTVMISGLCKEGMFDEALAIKSKM----------------------------------ED 458
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
N C PN VT I++++ E ++A KL EM
Sbjct: 459 NGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEM 491
>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 694
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 134/306 (43%), Gaps = 29/306 (9%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD + Y ++ AG + F +++ M TL+ + PD+ Y +
Sbjct: 304 FPDVITYSTLICGFCLAGQLMGAFSLLNEM-----------TLKN----INPDVYTYTIL 348
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK-YNLVYEFFRKVQKSY 122
++A + + + A +L + ++G KP+ TY +M+ G+ +N F VQ
Sbjct: 349 IDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEV 408
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ +Y +++N L + DEA++ + +M + +V + Y L LC +G+ AL
Sbjct: 409 NPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALD 468
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYL 241
M ++ V++YT L+ + N+ A +F +MK PN T ++
Sbjct: 469 LMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLC 528
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ + A KLFQ + KG I D+YT+N M+ E D+ +
Sbjct: 529 KGARLKNAQKLFQHILV-----------KGCCI-DVYTYNVMIGGLCKEGMLDEALAMKS 576
Query: 302 RMLHHG 307
+M +G
Sbjct: 577 KMEDNG 582
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 115/252 (45%), Gaps = 17/252 (6%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
V Y +LN + + A +L+ ++ + +P Y +++ + N Y+F+ +
Sbjct: 238 VSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTE 297
Query: 118 VQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
+ + P+ + Y L+ G+ A S + +M + I Y L LC GK
Sbjct: 298 MNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGK 357
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNI 235
+EA + + K KP VV+Y+ L+ G + NA IF+ M + +P++ + NI
Sbjct: 358 LKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNI 417
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWD 294
M+ + +EAM L +EM + V+P+ T+N+++D C + +
Sbjct: 418 MINGLCKGKSVDEAMNLLREMLHKN------------VVPNTVTYNSLIDGLCKSGRITS 465
Query: 295 DLELVYKRMLHH 306
L+L+ + LHH
Sbjct: 466 ALDLM--KELHH 475
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/292 (19%), Positives = 118/292 (40%), Gaps = 16/292 (5%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D PD+V+YN +++ + K A+ ++ +G P TY ++ G+
Sbjct: 265 DRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLM 324
Query: 110 LVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
+ ++ K+ P+ Y +L++ L +EGK EA + + M + G+ + Y L
Sbjct: 325 GAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLM 384
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFC 226
C G+ A + + P V SY +I ++ A + +M KN
Sbjct: 385 DGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVV 444
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
PN VT N ++ + G A+ L +E+ D+ T+ ++LD
Sbjct: 445 -PNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQP------------ADVITYTSLLDG 491
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
+ D ++ +M G+ N + +I + +++ + ++H+
Sbjct: 492 LCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHI 543
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 75/357 (21%), Positives = 144/357 (40%), Gaps = 57/357 (15%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSA-------------------- 92
+EPD+V + ++N Q +F VL ++ + G +P+
Sbjct: 163 IEPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSL 222
Query: 93 ---------------TTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTL 136
+YG ++ + G+ + R ++ +S P+ + Y +++ L
Sbjct: 223 HFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGL 282
Query: 137 WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV 196
++ +EA +M RGI Y L C AG+ A ++++ P V
Sbjct: 283 CKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDV 342
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
+YT LI A G ++ A + M K PN+VT + ++ Y G A ++F
Sbjct: 343 YTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHA 402
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
M + V P + ++N M++ K D+ + + MLH + N +
Sbjct: 403 MVQTE------------VNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTY 450
Query: 316 LRMILDASRAGKV-ELLEITWEHLAR---ADRITPPALIKERFCNRLENKDYGSAIS 368
+I ++G++ L++ E R AD IT +L+ + C +N++ AI+
Sbjct: 451 NSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLL-DGLC---KNQNLDKAIA 503
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/179 (19%), Positives = 75/179 (41%), Gaps = 5/179 (2%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + P+ V YN++++ + + A ++++L +GQ TY +++ + C
Sbjct: 437 EMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGL--CK 494
Query: 107 KYNL---VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
NL + F + ++ PN Y L++ L + + A + + +G
Sbjct: 495 NQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYT 554
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y + LC G +EAL K+ P V++ +I++ + A + ++M
Sbjct: 555 YNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEM 613
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 39/207 (18%), Positives = 86/207 (41%), Gaps = 15/207 (7%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + ++ +L + A+S + ME +GI L C C G+ +
Sbjct: 130 PSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSV 189
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
+ KI K+ +P + T L++ G ++ + + +++ + F N V+ ++
Sbjct: 190 LGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGF-QMNQVSYGTLLNGLC 248
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G A+KL + + + S PD+ +NT++D +K ++ Y
Sbjct: 249 KIGETRCAIKLLRMIEDRSTR------------PDVVMYNTIIDGLCKDKLVNEAYDFYT 296
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKV 328
M G+ + + +I AG++
Sbjct: 297 EMNSRGIFPDVITYSTLICGFCLAGQL 323
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 42/234 (17%), Positives = 91/234 (38%), Gaps = 47/234 (20%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R P I+ + +L + V+ K + A + +Q++ +G +P T
Sbjct: 127 RNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTL---------------- 170
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+L+N G+ + S + + + G + + L + L
Sbjct: 171 ------------------SILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGL 212
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNL 230
C G+ +++L DK+ + VSY L+ G + A + +++ + P++
Sbjct: 213 CLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDV 272
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
V N ++ + L EA + EM + +G + PD+ T++T++
Sbjct: 273 VMYNTIIDGLCKDKLVNEAYDFYTEM-----------NSRG-IFPDVITYSTLI 314
>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
Length = 886
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 117/254 (46%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P +R I AG +K FD +D MR ++G P ++ YNA++
Sbjct: 529 PSNRTFRPIIEGFAVAGDMKRAFDTLDLMR-------RSGCA--------PTVMTYNALI 573
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ VR+ Q E A VL ++ G P+ TY ++M A G +E+F K+++S +
Sbjct: 574 HGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLK 633
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ Y+ L+ + G+ A++ +M + I + +Y L G EA
Sbjct: 634 LDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADL 693
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ ++ + P + ++T I AC +G++Q A + +M + PN+ T ++K +
Sbjct: 694 LKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWAR 753
Query: 243 HGLFEEAMKLFQEM 256
L + A+K F+EM
Sbjct: 754 VSLPDRALKCFEEM 767
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 124/274 (45%), Gaps = 14/274 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD +YN ++ A + + A + ++++++ +PS T+ ++E G +
Sbjct: 492 LQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRPIIEGFAVAGDMKRAF 551
Query: 113 EFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +++S P + Y L++ L R+ + ++AVS ++ M GI + Y + R
Sbjct: 552 DTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGY 611
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NL 230
++G +A KI + K V Y L++AC SG +Q+A + +M P N
Sbjct: 612 AASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNT 671
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
NI++ + G EA L ++M ED + P+I+TF + ++AC
Sbjct: 672 FIYNILIDGWARRGDVWEAADLLKQMKEDG------------IPPNIHTFTSYINACCKA 719
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASR 324
E V + M GL N K +I +R
Sbjct: 720 GDMQRAENVIQEMADVGLKPNVKTFTTLIKGWAR 753
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/272 (19%), Positives = 115/272 (42%), Gaps = 15/272 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+EP+ V+ ++++A GA ++++K +G + + TY +++
Sbjct: 282 IEPNAFVFTSLVHAYAVAGDMRGALSCVEEMKSEGIEMTVVTYSILISGYGKTNDAQSAD 341
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F++ + N + Y +++ + G D A V +ME GI +Y+ +
Sbjct: 342 NLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGY 401
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
++ L+ +++ + KP ++SY LI + G + A I +M++ N
Sbjct: 402 TVVQDEKKCLIVFERLKECGFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNN 461
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T ++++ ++ F A +F++M K GL PD +N +++A
Sbjct: 462 KTYSMLINGFIHLHDFANAFSIFEDMI-----------KSGLQ-PDRAIYNLLVEAFCKM 509
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDA 322
D +++RM + + R R I++
Sbjct: 510 GNMDRAIRIFERMQKERMQ-PSNRTFRPIIEG 540
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 59/334 (17%), Positives = 131/334 (39%), Gaps = 66/334 (19%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME---VMLACGKYNLVYEF 114
++Y+ +++A + + A +++++++ G Y +M V+ K +V+E
Sbjct: 357 IIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFER 416
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAV---------------------------- 146
++ + P ++Y L+N + GK +A+
Sbjct: 417 LKEC--GFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHL 474
Query: 147 -------SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSY 199
S EDM + G+ A+Y L C G + A+ +++ K +P ++
Sbjct: 475 HDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTF 534
Query: 200 TGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA- 257
+I+ +G+++ A + M ++ C+P ++T N ++ + E+A+ + +M+
Sbjct: 535 RPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSI 594
Query: 258 -----------------EDSNHINREYD------KKGLVIPDIYTFNTMLDACAAEKRWD 294
S I + ++ + GL + D+Y + T+L AC R
Sbjct: 595 AGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKL-DVYIYETLLRACCKSGRMQ 653
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
V + M + N + +I +R G V
Sbjct: 654 SALAVTREMSFQKIPRNTFIYNILIDGWARRGDV 687
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 4/154 (2%)
Query: 108 YNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ V F ++ K P+ + ++V + G A + E+M RGI +A ++ L
Sbjct: 236 WQAVVSAFERIPK---PSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSL 292
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FC 226
AG AL ++++ + VV+Y+ LI + + Q+A +F + K
Sbjct: 293 VHAYAVAGDMRGALSCVEEMKSEGIEMTVVTYSILISGYGKTNDAQSADNLFKEAKTKLD 352
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
+ N + + ++ A+ + G + A +L +EM ED
Sbjct: 353 NLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDG 386
>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic [Vitis vinifera]
Length = 1022
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 141/322 (43%), Gaps = 35/322 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D + Y ++ + G ++E F + M K G +EPD YN +++
Sbjct: 592 DKITYNTLISGCCKEGKVEEGFKLRGEM-------VKQG--------IEPDTFTYNLLIH 636
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP- 124
R + + A + + K + P+ TYG++++ K + F ++ +
Sbjct: 637 GMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLEL 696
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N++ Y L+ R G T EA +DM +GI + A Y L +C+ G+ E+A +
Sbjct: 697 NSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLI 756
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
D++ K P VV YT LI G + + +M ++ PN +T +M+ Y +
Sbjct: 757 DEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKS 816
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G + A KL EM KG ++PD T+N + + E + ++ +L +
Sbjct: 817 GDMKTAAKLLHEMV-----------GKG-IVPDTVTYNVLTNGFCKEGKIEEGKL----L 860
Query: 304 LHHGLHFNAKRHLRMILDASRA 325
G+ FN+ L +I +A RA
Sbjct: 861 AEDGVGFNSP--LFLIHEAFRA 880
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 102/245 (41%), Gaps = 15/245 (6%)
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALA 128
R + A V + L +G P+ T ++ ++ + Y F +++ P+
Sbjct: 256 RNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYL 315
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
+ +N + GK ++A+ DME+ G+ + Y +L LC G +EA +K+
Sbjct: 316 FSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMV 375
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLF 246
K +++Y+ LI + A + + K F +PN V N ++ Y + G
Sbjct: 376 KDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGF-TPNEVVYNTLIDGYCKMGNL 434
Query: 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306
+A+++ +M S IN P+ T N+++ + + E + + ML
Sbjct: 435 GDALRIRGDMV--SKGIN----------PNSVTLNSIIQGFCKIGQMEQAECILEEMLSR 482
Query: 307 GLHFN 311
G N
Sbjct: 483 GFSIN 487
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 121/295 (41%), Gaps = 25/295 (8%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE-FFRKV 118
+ +++ ++E A L+++ + +P+ ++ + GK++ E +FR +
Sbjct: 491 FTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLL 550
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+K + N + L++ L + G EAV ++ M RG V Y L C GK E
Sbjct: 551 EKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVE 610
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
E ++ K +P +Y LI G + A ++N+ K+ PN+ T +M+
Sbjct: 611 EGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMI 670
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHIN--------REYDKKGLVI--------------- 274
Y + EE KLF E+ + +N R Y + G +
Sbjct: 671 DGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIP 730
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
P T+++++ R +D + + M GL N + +I + G+++
Sbjct: 731 PTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMD 785
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/342 (19%), Positives = 141/342 (41%), Gaps = 29/342 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L + G++ E F +K K G + ++ Y+ ++
Sbjct: 346 PNVVTYNNLIHGLCKHGNLDEAF-------RFKEKMVKDG--------VNATLITYSVLI 390
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N ++ +++ A VL++ ++G P+ Y +++ G V K
Sbjct: 391 NGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGIN 450
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN++ ++ + G+ ++A +E+M RG + + + LC + E AL
Sbjct: 451 PNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRF 510
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI-FNQMKNFCSPNLVTCNIMVKAYLE 242
+ ++ +P T L+ G +A + F ++ NLVT N ++ +
Sbjct: 511 LREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCK 570
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +EA++L ++M E +G V+ D T+NT++ C E + ++ +
Sbjct: 571 TGNMQEAVRLLKKMLE-----------RGFVL-DKITYNTLISGCCKEGKVEEGFKLRGE 618
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI 344
M+ G+ + + +I R GK++ W D +
Sbjct: 619 MVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLV 660
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 126/306 (41%), Gaps = 22/306 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PD+ +++ +NA + + E A + +++ G P+ TY ++ + G + +
Sbjct: 309 VSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAF 368
Query: 113 EFFRKVQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F K+ K + L Y VL+N L + K +EA S +++ +G + +Y L
Sbjct: 369 RFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGY 428
Query: 172 CSAGKCEEAL-MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSP 228
C G +AL ++ D + K N P V+ +IQ G ++ A I +M + F S
Sbjct: 429 CKMGNLGDALRIRGDMVSKGIN-PNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGF-SI 486
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
N ++ + FE A++ +EM + P+ T++
Sbjct: 487 NPGAFTTIIHWLCMNSRFESALRFLREMLLRNMR------------PNDGLLTTLVGGLC 534
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEITWEHLARADRI 344
E + D ++ R+L G N +I + G V LL+ E D+I
Sbjct: 535 KEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKI 594
Query: 345 TPPALI 350
T LI
Sbjct: 595 TYNTLI 600
>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
Length = 795
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 130/280 (46%), Gaps = 16/280 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
LEP+++ Y +++A + + E A ++ ++ + P TY +M + GK
Sbjct: 83 LEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAK 142
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
FR++++ +PN +Y L+++L++EG EA M RGI +Y L L
Sbjct: 143 SVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGL 202
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
AG A + + + P V+Y+ LI G++ + +M + PN+
Sbjct: 203 FKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNV 262
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAA 289
+ + +V Y + GL EAM + ++M + + ++P+++ + T++D A
Sbjct: 263 IVYSSIVDGYTKKGLLNEAMDVMRKMVQRN------------ILPNVFVYGTLIDGYFKA 310
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++R L+L +K M GL N + + R+G++E
Sbjct: 311 DQRGIALDL-FKEMKSRGLEENNFVIDSFVNNLKRSGRME 349
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/353 (20%), Positives = 148/353 (41%), Gaps = 34/353 (9%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ + Y SI + G + E DV MR + ++ + P++ VY +
Sbjct: 259 FPNVIVYSSIVDGYTKKGLLNEAMDV---MRKMVQR------------NILPNVFVYGTL 303
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSY 122
++ + Q A + +++K +G + + + + G+ E F+ + +
Sbjct: 304 IDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGL 363
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P+ + Y +++ ++ GK +A + ++M + Y L L GK E
Sbjct: 364 LPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESF 423
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYL 241
+ ++ P ++ +I A GN+ NA + N+MK++ PN +TCNI+V+
Sbjct: 424 HTG-MRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLC 482
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G E+ M L +M H P T +LDA + +R D + ++
Sbjct: 483 AAGEIEKTMDLLNDMLVMGFH------------PTPTTHKAVLDASSKSRRADVILHMHD 530
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR----ADRITPPALI 350
+++ G+ + + +I R G + + ++ + AD IT ALI
Sbjct: 531 QLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALI 583
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 126/279 (45%), Gaps = 16/279 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + + P+++VY+++++ ++ A V++++ Q+ P+ YG +++
Sbjct: 252 EMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKAD 311
Query: 107 KYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ + + F++++ + N VN L R G+ +EA +DM RG++ Y
Sbjct: 312 QRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYT 371
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+ AGK +A ++ + ++ VV+Y LI G ++ ++ +
Sbjct: 372 SMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLG 431
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
+P+ T N M+ AY + G A+KL EM + Y K P+ T N ++
Sbjct: 432 LAPDSATFNTMINAYCKEGNLGNALKLLNEM--------KSYGLK----PNSITCNILVQ 479
Query: 286 -ACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDAS 323
CAA + ++L+ ML G H H + +LDAS
Sbjct: 480 RLCAAGEIEKTMDLL-NDMLVMGFHPTPTTH-KAVLDAS 516
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 17/227 (7%)
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
+ VL++ R G+ AV +E M+ G Y L C G A M +I
Sbjct: 20 FNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEIS 79
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFE 247
V +P V++YT LI A S +++A Y++++M P++VT ++ + G E
Sbjct: 80 LVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVE 139
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
EA +F+EM E V+P+ +++ T++D+ E + ++ RM+ G
Sbjct: 140 EAKSVFREMEEVG------------VVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRG 187
Query: 308 LHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPALI 350
+ F+ + ++ +AG ++ ++ E + +T ALI
Sbjct: 188 IGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALI 234
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/347 (20%), Positives = 142/347 (40%), Gaps = 35/347 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLER---- 48
P+ +Y ++ +L + G++ E F + M +L FK G
Sbjct: 155 PNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDM 214
Query: 49 ----WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ L P+ V Y+A+++ + +LQ+++++ P+ Y +++
Sbjct: 215 FQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTK 274
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G N + RK VQ++ +PN Y L++ ++ + A+ ++M+ RG+ + +
Sbjct: 275 KGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFV 334
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
L +G+ EEA + P V+YT ++ +G +A I +M
Sbjct: 335 IDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMT 394
Query: 224 NFCSP-NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
S ++V N+++ + G +E S + + GL PD TFNT
Sbjct: 395 EKSSGFDVVAYNVLINGLFKLGKYE------------SESFHTGMRQLGLA-PDSATFNT 441
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
M++A E + + M +GL N+ ++ AG++E
Sbjct: 442 MINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIE 488
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/367 (21%), Positives = 134/367 (36%), Gaps = 68/367 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLERWDPR 52
PD V Y S+ +AG + F++ M L FK G E
Sbjct: 365 PDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFH 424
Query: 53 -------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
L PD +N ++NA + A +L ++K G KP++ T ++++ + A
Sbjct: 425 TGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAA 484
Query: 106 GKYNLVYEFFRKV-------------------QKSYIPNAL-----------------AY 129
G+ + + KS + + Y
Sbjct: 485 GEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTY 544
Query: 130 KVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK 189
L++T R G A +DM +GI+ Y L C + ++A ++
Sbjct: 545 NTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLT 604
Query: 190 VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEE 248
P V +Y L+ + I+ AA + NQMK PN T +I+V + + G +E
Sbjct: 605 EGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKE 664
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+KL+ EM KG V P T+N ++ A K+ + + + M G+
Sbjct: 665 CVKLYCEMI-----------TKGFV-PKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGI 712
Query: 309 HFNAKRH 315
N+ +
Sbjct: 713 PPNSSTY 719
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/296 (18%), Positives = 123/296 (41%), Gaps = 24/296 (8%)
Query: 29 VIDSMRSLPKKKFKTGTLERWDP--------RLEPDIVVYNAVLNACVRRKQWEGAFWVL 80
VIDS + K+ +G +E D L PD V Y ++++ + + AF +
Sbjct: 334 VIDSFVNNLKR---SGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIA 390
Query: 81 QQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREG 140
Q++ ++ Y +++ + GKY Q P++ + ++N +EG
Sbjct: 391 QEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFNTMINAYCKEG 450
Query: 141 KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYT 200
A+ + +M+ G+ ++ L + LC+AG+ E+ + ++ + + P ++
Sbjct: 451 NLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHK 510
Query: 201 GLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
++ A S ++ +Q+ +L T N ++ + G+ A +F++M
Sbjct: 511 AVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMM-- 568
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
KG ++ DI T+N ++ V+ +ML G+ N + +
Sbjct: 569 ---------GKG-ILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETY 614
>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Brachypodium distachyon]
Length = 897
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 122/276 (44%), Gaps = 25/276 (9%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
V YN +++ R E AF +++ G P A TYG +M + G+ +
Sbjct: 281 VTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDE 340
Query: 118 VQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
+ S + PN + Y LV+ +EGK EA + +M G+ + +Y +L R LC G+
Sbjct: 341 MSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQ 400
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNI 235
A ++++ KV ++P +Y L+Q + A + N+M+N PN T I
Sbjct: 401 LGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGI 460
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDS------------------NHI-----NREYDKKGL 272
M+ ++G +EA L +EM + HI + E K
Sbjct: 461 MINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKAN 520
Query: 273 VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
V+PD++ +N+++ + R ++ E Y ++ GL
Sbjct: 521 VLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGL 556
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 127/305 (41%), Gaps = 29/305 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y S+ L G I+E +++ +R L PD Y+ ++
Sbjct: 523 PDLFCYNSLIKGLSTVGRIEE------------AEEYYAQVQKRG---LVPDEFTYSGLI 567
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-I 123
+ + + E A +LQQ+ G KP+A TY ++E + V + + S
Sbjct: 568 HGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDK 627
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y +++ L R + A + ++E+ G+V +Y L LC E+A+
Sbjct: 628 PDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGL 687
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLE 242
+D++ K +P +V Y LI SG+I A +F+ + PN VT ++ +
Sbjct: 688 LDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCK 747
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+G +A L+++M + + PD + +N + C+ + + +
Sbjct: 748 NGDITDAFDLYKDMLDRG------------IAPDAFVYNVLATGCSDAADLEQALFLTEE 795
Query: 303 MLHHG 307
M + G
Sbjct: 796 MFNRG 800
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/329 (23%), Positives = 137/329 (41%), Gaps = 53/329 (16%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLERWDPR 52
P+ V Y ++ + G E FD+++ M S L + K G L R
Sbjct: 348 PNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKL 407
Query: 53 L--------EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L PD Y+ ++ + +GAF +L +++ G P+A TYG+++ +
Sbjct: 408 LNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQ 467
Query: 105 CGKY----NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
G+ NL+ E + + PNA Y L+ +EG A ++E+M + ++
Sbjct: 468 NGESKEAGNLLEEM---ISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPD 524
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y L + L + G+ EEA ++ K P +Y+GLI + N++ A +
Sbjct: 525 LFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQ 584
Query: 221 QMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA----EDSNHIN----------- 264
QM N PN T +++ Y + E+ + Q M + NHI
Sbjct: 585 QMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSE 644
Query: 265 ---------REYDKKGLVIPDIYTFNTML 284
E +K GLV PD++ +++++
Sbjct: 645 NMEVAFMVLTEVEKNGLV-PDLHIYSSLI 672
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 132/323 (40%), Gaps = 25/323 (7%)
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L D L P N +L +R E + + ++ G P TY +E
Sbjct: 198 VLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYSTFLEAHCK 257
Query: 105 CGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
++ + F ++++ N + Y V+++ L R G +EA E+M G+ A
Sbjct: 258 ARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFT 317
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L LC G+ +EA +D++ KP VV Y L+ + G A I N+M
Sbjct: 318 YGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMI 377
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN------------REYDKK 270
+ PN + + +++ + G A KL EM + + + + YDK
Sbjct: 378 SAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKD 437
Query: 271 GL-----------VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
G ++P+ YT+ M++ + + + M+ GL NA + +I
Sbjct: 438 GAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLI 497
Query: 320 LDASRAGKVELLEITWEHLARAD 342
+ S+ G + L + E++ +A+
Sbjct: 498 IGHSKEGHISLACESLENMTKAN 520
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 136/317 (42%), Gaps = 29/317 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y ++ L + G +KE ++D M L+P++VVY ++
Sbjct: 313 PDAFTYGALMNGLCKGGRLKEAKALLDEMSC---------------SGLKPNVVVYATLV 357
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ ++ + AF +L ++ G +P+ Y ++ + G+ + ++ K +
Sbjct: 358 DGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHR 417
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y L+ ++ D A + +M GI+ +A Y + LC G+ +EA
Sbjct: 418 PDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNL 477
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAA-YIFNQMKNFCSPNLVTCNIMVKAYLE 242
++++ KP Y LI G+I A + N K P+L N ++K
Sbjct: 478 LEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLST 537
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G EEA + + ++ K+GLV PD +T++ ++ + + + + ++
Sbjct: 538 VGRIEEAEEYYAQV-----------QKRGLV-PDEFTYSGLIHGYCKTRNLEKADQLLQQ 585
Query: 303 MLHHGLHFNAKRHLRMI 319
ML+ GL NA + ++
Sbjct: 586 MLNSGLKPNADTYTDLL 602
>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 504
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 133/292 (45%), Gaps = 16/292 (5%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK-YNLVYEFFRKVQ 119
N +LN R Q A L ++ + G +P T+G ++ + Y+ +Y F R V+
Sbjct: 120 NILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVE 179
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
Y PN + Y +++ L + + D A+ + ME GI A Y L LC++G+ ++
Sbjct: 180 MGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDD 239
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A + + K P V ++ LI AC+ G I A ++ +M + P++VT ++++
Sbjct: 240 ATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIY 299
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ +EA ++F M KG PD+ T++ +++ K+ +
Sbjct: 300 GLCMYSRLDEAEQMFGFMVS-----------KG-CFPDVVTYSILINGYCKSKKVEHGMK 347
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
++ M G+ N + +I RAGK+ + E ++ + PP +I
Sbjct: 348 LFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCG--VPPNII 397
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/326 (21%), Positives = 134/326 (41%), Gaps = 29/326 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + S+ + I + + D M + EP++V+YN ++
Sbjct: 149 PDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMG---------------YEPNVVIYNTII 193
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + KQ + A +L +++ G +P A TY ++ + G+++ + K I
Sbjct: 194 DGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIY 253
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + L++ +EG+ EA E+M RR + Y L LC + +EA
Sbjct: 254 PDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQM 313
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ P VV+Y+ LI S +++ +F +M + N VT ++++ Y
Sbjct: 314 FGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCR 373
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G A ++F+ M V P+I T+N +L + + ++
Sbjct: 374 AGKLNVAEEIFKWMVFCG------------VPPNIITYNVLLHGLCDNGKIEKALVILAD 421
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV 328
M G+ + + +I +AG+V
Sbjct: 422 MQKSGMDADIVTYNIIIRGMCKAGEV 447
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 123/278 (44%), Gaps = 14/278 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPDIV + ++LN R + A ++ ++ + G +P+ Y +++ + + + +
Sbjct: 148 EPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALD 207
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+++ I P+A+ Y L++ L G+ D+A V M +R I + L
Sbjct: 208 LLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACV 267
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
G+ EA +++ + + P +V+Y+ LI + A +F M C P++V
Sbjct: 268 KEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVV 327
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T +I++ Y + E MKLF EM++ V+ + T+ ++
Sbjct: 328 TYSILINGYCKSKKVEHGMKLFCEMSQRG------------VVRNTVTYTVLIQGYCRAG 375
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + E ++K M+ G+ N + ++ GK+E
Sbjct: 376 KLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIE 413
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 71/337 (21%), Positives = 141/337 (41%), Gaps = 48/337 (14%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P+ V Y +I L ++ + D+++ M + PD V Y
Sbjct: 180 MGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEV---------------DGIRPDAVTY 224
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQ 119
N++++ +W+ A ++ + ++ P T+ +++ + G+ + E + + ++
Sbjct: 225 NSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIR 284
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+S P+ + Y +L+ L + DEA M +G Y L C + K E
Sbjct: 285 RSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEH 344
Query: 180 ALMQMDKICKVANKPLV---VSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--PNLVTCN 234
M C+++ + +V V+YT LIQ +G + A IF M FC PN++T N
Sbjct: 345 G---MKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMV-FCGVPPNIITYN 400
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKGLV------------- 273
+++ ++G E+A+ + +M + N I R K G V
Sbjct: 401 VLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLK 460
Query: 274 --IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
PDI+T+ M+ + + + ++++M G+
Sbjct: 461 GLTPDIWTYTAMMLGLYKKGLRGEADALFRKMKEDGI 497
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 112/251 (44%), Gaps = 14/251 (5%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
Y +L +R + + + + + Q PS + ++ + KY++V + ++Q
Sbjct: 49 YREMLRNGIRYMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQ 108
Query: 120 KSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
IP N +L+N R + A+S + M + G + L C +
Sbjct: 109 MLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIY 168
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMV 237
+AL D++ ++ +P VV Y +I S + NA + N+M+ + P+ VT N ++
Sbjct: 169 DALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLI 228
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
G +++A ++ M + RE + PD++TFN ++DAC E R + E
Sbjct: 229 SGLCNSGRWDDATRMVSCMTK------RE------IYPDVFTFNALIDACVKEGRISEAE 276
Query: 298 LVYKRMLHHGL 308
+Y+ M+ L
Sbjct: 277 ELYEEMIRRSL 287
>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
Length = 797
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 131/311 (42%), Gaps = 36/311 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM-----RSLPKKKFKTGTLERWDPRLEPDIVV 59
PD V+Y ++ +E +++ M RS P P++V
Sbjct: 163 PDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCP-----------------PNVVS 205
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-V 118
Y V+N Q + A+ + ++ +G +P+ TY V++ + + F++ +
Sbjct: 206 YATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMI 265
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
K P+ Y L++ GK E V +E+M G+ Y L LC+ G+C
Sbjct: 266 DKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCR 325
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMV 237
EA D + + KP V Y LI G + + N M +N SP+ NI+
Sbjct: 326 EARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIF 385
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
AY + + +EAM +F +M + +GL PD+ F ++DA R DD
Sbjct: 386 TAYAKKAMIDEAMHIFNKMKQ-----------QGLS-PDVVNFGALIDALCKLGRVDDAV 433
Query: 298 LVYKRMLHHGL 308
L + +M++ G+
Sbjct: 434 LKFNQMMNEGV 444
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 131/306 (42%), Gaps = 29/306 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V+Y ++ G + + +++ LE D ++P++V Y V+
Sbjct: 201 PNVVSYATVINGFFTEGQVDKAYNLF---------------LEMMDRGIQPNVVTYTTVI 245
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + + A V QQ+ +G KP TY ++ L+ GK+ V ++ +
Sbjct: 246 DGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLK 305
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y L+N L G+ EA + M R+GI + A+Y L + G E
Sbjct: 306 PDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDL 365
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
++ + + P + + A I A +IFN+MK SP++V ++ A +
Sbjct: 366 LNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCK 425
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G ++A+ F +M + V P+I+ FN+++ +W+ + Y
Sbjct: 426 LGRVDDAVLKFNQMMNEG------------VAPNIFVFNSLVYGLCTVDKWEKAKEFYFE 473
Query: 303 MLHHGL 308
ML+ G+
Sbjct: 474 MLNQGI 479
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 95/214 (44%), Gaps = 2/214 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD+V + A+++A + + + A Q+ +G P+ + ++ + K+
Sbjct: 409 LSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAK 468
Query: 113 EF-FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
EF F + + P+ + + ++ L +G+ +A ++ MER G Y L
Sbjct: 469 EFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGH 528
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C G+ +EA +D + V KP +Y L+ +G I +A +F +M +N +P +
Sbjct: 529 CLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGV 588
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
VT + ++ F EA +L+ M N
Sbjct: 589 VTYSTILHGLFTTRRFSEAKELYLNMITSGKQWN 622
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 67/344 (19%), Positives = 131/344 (38%), Gaps = 64/344 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y S+ L G +E DSM + G ++P++ +Y ++
Sbjct: 306 PDCYTYGSLLNYLCNNGRCREARFFFDSM-------IRKG--------IKPNVAIYGILI 350
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + +L + + G P + ++ + F K+ Q+
Sbjct: 351 HGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLS 410
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA--- 180
P+ + + L++ L + G+ D+AV M G+ + ++ L LC+ K E+A
Sbjct: 411 PDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEF 470
Query: 181 ----------------------------LMQ----MDKICKVANKPLVVSYTGLIQACLD 208
+M+ +D + +V +P V+SYT LI
Sbjct: 471 YFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCL 530
Query: 209 SGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
G I AA + M + P+ T N ++ Y G ++A +F+EM +
Sbjct: 531 VGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNG------- 583
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
+ P + T++T+L +R+ + + +Y M+ G +N
Sbjct: 584 -----ITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWN 622
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 117/282 (41%), Gaps = 31/282 (10%)
Query: 84 KQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTD 143
+ G++ S T LV+ +L R+ P+ Y +L+ R G+ +
Sbjct: 61 RVSGRRSSTTESELVV---------SLFNRMIRECTIKVTPDLCTYSILIGCFCRMGRLE 111
Query: 144 EAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL-MQMDKICKVANKPLVVSYTGL 202
+ + + G + + L + LC A + EA+ + + ++ ++ P VVSY L
Sbjct: 112 HGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAMDILIKRMPELGCTPDVVSYNTL 171
Query: 203 IQACLDSGNIQNAAYIFNQMKN----FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
++ + + A + + M + C PN+V+ ++ + G ++A LF EM +
Sbjct: 172 LKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMD 231
Query: 259 DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRM 318
+ P++ T+ T++D + D E V+++M+ G+ + + +
Sbjct: 232 RG------------IQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCL 279
Query: 319 ILDASRAGK----VELLEITWEHLARADRITPPALIKERFCN 356
I GK V +LE H + D T +L+ CN
Sbjct: 280 IHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLN-YLCN 320
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 106/262 (40%), Gaps = 17/262 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + +I L G + + +ID M ER R PD++ Y ++
Sbjct: 481 PDVVFFNTILCNLCTKGQVMKAQRLIDLM-------------ERVGTR--PDVISYTTLI 525
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + A L + G KP TY ++ G+ + Y FR++ ++ I
Sbjct: 526 GGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGIT 585
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y +++ L+ + EA +M G + +Y + L +EA
Sbjct: 586 PGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKL 645
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+C + + ++ +I A SG ++A ++F + ++ P++ T ++ + +E
Sbjct: 646 FQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIE 705
Query: 243 HGLFEEAMKLFQEMAEDSNHIN 264
G EE LF M + N
Sbjct: 706 EGYLEEFDDLFSAMEKSGTTPN 727
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 1/133 (0%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
+I +YN +LN + + AF + Q L + + TT+ +++ + G+ F
Sbjct: 622 NIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLF 681
Query: 116 RKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ +P+ Y ++ L EG +E ME+ G ++ + L R L
Sbjct: 682 ATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHR 741
Query: 175 GKCEEALMQMDKI 187
G A + K+
Sbjct: 742 GDITRAGAYLSKL 754
>gi|255546727|ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546418|gb|EEF47918.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 809
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 128/285 (44%), Gaps = 31/285 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ G + + ++ M+ + K PDIV YN +
Sbjct: 427 PDIINYTTVISGYFLKGKVVDALNIYREMKDIGHK---------------PDIVTYNVLA 471
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
R + A +L ++ QG KP T+ +++E + GK + FF +++ +
Sbjct: 472 GGFSRNGLTQEALSLLNYMETQGVKPDTVTHNMIIEGLCIGGKVDDAQAFFDNLEEKCLE 531
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N Y +VN ++A + + + ++G + A ++ L LCS G E+AL +
Sbjct: 532 N---YSAMVNGYCEANHVNKAFALLIRLSKQGRILKKASFFKLLGNLCSEGDSEKALCLL 588
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEH 243
+ + + P ++ Y+ +I A +G ++ A Y+FN + + +P+++T IM+ Y
Sbjct: 589 ETMVALNINPTMIMYSKVIGALFQAGEMEKAQYVFNMLVDRGLAPDVITYTIMINGYCRM 648
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
+EA + +M NR + PD+ T+ +L+ C+
Sbjct: 649 NKMKEAWHVLGDMK------NRGIE------PDVITYTVLLNNCS 681
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 109/258 (42%), Gaps = 18/258 (6%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ ++ D+ Y V+ + + A +L+++++QG P Y ++ G N
Sbjct: 282 NAKIPMDVFAYTVVIRGFCSEMKLKEAESILREMEKQGFAPDVYVYCALISGYCMVG--N 339
Query: 110 LVYEFF---RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
L+ V K N + ++ L + G E + ++ ++ GI A Y
Sbjct: 340 LLKALALHDEMVSKGVKTNCVILSSILQGLSQMGMASEVANQFKEFKKMGIFFDEACYNV 399
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC 226
+ LC GK EEA+ + ++ P +++YT +I G + +A I+ +MK+
Sbjct: 400 VMDALCKLGKVEEAVELLVEMKGKKMVPDIINYTTVISGYFLKGKVVDALNIYREMKDIG 459
Query: 227 -SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
P++VT N++ + +GL +EA+ L M V PD T N +++
Sbjct: 460 HKPDIVTYNVLAGGFSRNGLTQEALSLLNYMETQG------------VKPDTVTHNMIIE 507
Query: 286 ACAAEKRWDDLELVYKRM 303
+ DD + + +
Sbjct: 508 GLCIGGKVDDAQAFFDNL 525
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 13/247 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P I+ N ++N V ++ + A + +QLK G P+ TY + ++ G +
Sbjct: 182 PQILSCNFLMNRLVESRKVDMAIAIYRQLKAFGLNPNDYTYTIAIKGFCRKGNLAEAIDV 241
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
FR +++S + PN+ +Y + L G++D ++D+ I Y + R CS
Sbjct: 242 FRDMEESGVTPNSFSYTTFIEGLCLHGRSDLGFKVLQDVINAKIPMDVFAYTVVIRGFCS 301
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTC 233
K +EA + ++ K P V Y LI GN+ A + ++M V
Sbjct: 302 EMKLKEAESILREMEKQGFAPDVYVYCALISGYCMVGNLLKALALHDEM----VSKGVKT 357
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKR 292
N ++ + + GL + M +E +N +E+ K G+ D +N ++DA C K
Sbjct: 358 NCVILSSILQGLSQMGMA-----SEVANQF-KEFKKMGIFF-DEACYNVVMDALCKLGKV 410
Query: 293 WDDLELV 299
+ +EL+
Sbjct: 411 EEAVELL 417
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 85/201 (42%), Gaps = 2/201 (0%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
V +A++ CV ++ AF VL Q K G P + +M ++ K ++ +R++
Sbjct: 151 VSDALIKVCVASGMFDQAFDVLLQTKHCGFAPQILSCNFLMNRLVESRKVDMAIAIYRQL 210
Query: 119 QKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+ + PN Y + + R+G EA+ DME G+ ++ Y LC G+
Sbjct: 211 KAFGLNPNDYTYTIAIKGFCRKGNLAEAIDVFRDMEESGVTPNSFSYTTFIEGLCLHGRS 270
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIM 236
+ + + V +YT +I+ ++ A I +M K +P++ +
Sbjct: 271 DLGFKVLQDVINAKIPMDVFAYTVVIRGFCSEMKLKEAESILREMEKQGFAPDVYVYCAL 330
Query: 237 VKAYLEHGLFEEAMKLFQEMA 257
+ Y G +A+ L EM
Sbjct: 331 ISGYCMVGNLLKALALHDEMV 351
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 37/197 (18%)
Query: 41 FKTGTLER--------WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSA 92
F+ G +E+ D L PD++ Y ++N R + + A+ VL +K +G +P
Sbjct: 611 FQAGEMEKAQYVFNMLVDRGLAPDVITYTIMINGYCRMNKMKEAWHVLGDMKNRGIEPDV 670
Query: 93 TTYGLVMEVMLACGKYNL-----VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVS 147
TY +++ C K +L + + + P+AL W E K
Sbjct: 671 ITYTVLLN---NCSKIDLRSSSSSLDAMKSKENMMDPSAL---------WSEMK------ 712
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
DM+ I Y L C ++A+ +++ P V+YT L+
Sbjct: 713 ---DMD---IKPDVICYTVLIDKHCKTNNIQDAINLFNEMIDRGLAPDTVTYTALLSGYC 766
Query: 208 DSGNIQNAAYIFNQMKN 224
+ GNI+ A +F++M N
Sbjct: 767 NVGNIKKAVVLFDEMLN 783
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 78/180 (43%), Gaps = 4/180 (2%)
Query: 80 LQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWR 138
++ K+ G Y +VM+ + GK E +++ K +P+ + Y +++ +
Sbjct: 382 FKEFKKMGIFFDEACYNVVMDALCKLGKVEEAVELLVEMKGKKMVPDIINYTTVISGYFL 441
Query: 139 EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
+GK +A++ +M+ G Y LA G +EAL ++ + KP V+
Sbjct: 442 KGKVVDALNIYREMKDIGHKPDIVTYNVLAGGFSRNGLTQEALSLLNYMETQGVKPDTVT 501
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
+ +I+ G + +A F+ ++ C N + MV Y E +A L +++
Sbjct: 502 HNMIIEGLCIGGKVDDAQAFFDNLEEKCLENY---SAMVNGYCEANHVNKAFALLIRLSK 558
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 48/233 (20%), Positives = 94/233 (40%), Gaps = 39/233 (16%)
Query: 70 RKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAY 129
R + AF QLK+ G TY ++ ++ G + RK+
Sbjct: 70 RNEPSLAFSYFNQLKESGYSHDPYTYAAIVRILCFWG-------WSRKLD---------- 112
Query: 130 KVLVNTLWREGKTDEAVSAVEDMERRGIVGSA-----ALYYDLARCLCSAGKCEEA--LM 182
+L+ + ++G D + + + GI + + L + ++G ++A ++
Sbjct: 113 SILMEIIKKDGNLDFGIVNLFEALGDGIANESFSVLVQVSDALIKVCVASGMFDQAFDVL 172
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYL 241
K C A P ++S L+ ++S + A I+ Q+K F +PN T I +K +
Sbjct: 173 LQTKHCGFA--PQILSCNFLMNRLVESRKVDMAIAIYRQLKAFGLNPNDYTYTIAIKGFC 230
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
G EA+ +F++M E V P+ +++ T ++ R D
Sbjct: 231 RKGNLAEAIDVFRDMEESG------------VTPNSFSYTTFIEGLCLHGRSD 271
>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
Length = 585
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 142/337 (42%), Gaps = 29/337 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L + G+ ++ SM +PD+VVY +++
Sbjct: 170 PNVVTYGTLINGLCKVGNTNAAIRLLRSMEQ---------------GNCQPDVVVYTSII 214
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
++ + +Q AF + ++ QG P TY ++ + ++ V ++ S I
Sbjct: 215 DSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIM 274
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + +V+ L +EGK EA V+ M RG+ + Y L C + +EA+
Sbjct: 275 PDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKV 334
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
D + P V+SY LI + A Y+F +M + PN VT N ++
Sbjct: 335 FDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCH 394
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G ++A+ LF EM IPD+ T+ +LD + D+ + K
Sbjct: 395 VGRLQDAIALFHEMVAHGQ------------IPDLATYRILLDYLCKKSHLDEAMALLKT 442
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
+ + + + + +I RAG++E + +L+
Sbjct: 443 IEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLS 479
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 128/306 (41%), Gaps = 29/306 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + ++ L + G I E DV+D M + R +EP++V YNA++
Sbjct: 275 PDVVIFSTVVDALCKEGKITEAHDVVDMM------------IIRG---VEPNVVTYNALM 319
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN-LVYEFFRKVQKSYI 123
+ + + + A V + G P+ +Y ++ + + Y F QK I
Sbjct: 320 DGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELI 379
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L++ L G+ +A++ +M G + A Y L LC +EA+
Sbjct: 380 PNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMAL 439
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+ I P + YT +I +G ++ A IF+ + + PN+ T IM+
Sbjct: 440 LKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCR 499
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
GL +EA KLF EM D N + PD T+NT+ K + +
Sbjct: 500 RGLLDEANKLFMEM--DGNGCS----------PDGCTYNTITQGLLQNKEALRAIQLLQE 547
Query: 303 MLHHGL 308
ML G
Sbjct: 548 MLARGF 553
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 127/309 (41%), Gaps = 29/309 (9%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P TV + + ++ + +F + + M S + PD+
Sbjct: 61 MHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSF---------------GIPPDVYTL 105
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQ 119
N ++N+ + AF VL ++ + G +P T+ ++ + GK F K +
Sbjct: 106 NILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIG 165
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ + PN + Y L+N L + G T+ A+ + ME+ +Y + LC + E
Sbjct: 166 EGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTE 225
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVK 238
A K+ P + +YT LI + + ++ + NQM N P++V + +V
Sbjct: 226 AFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVD 285
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
A + G EA + M +G V P++ T+N ++D + D+
Sbjct: 286 ALCKEGKITEAHDVVDMMI-----------IRG-VEPNVVTYNALMDGHCLQSEMDEAVK 333
Query: 299 VYKRMLHHG 307
V+ M+H+G
Sbjct: 334 VFDTMVHNG 342
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 125/306 (40%), Gaps = 31/306 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT + ++ L G I + + D M +P++V Y ++
Sbjct: 135 PDTATFTTLIRGLCVEGKIGDALHLFDKM---------------IGEGFQPNVVTYGTLI 179
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + A +L+ ++Q +P Y +++ + + + F K V +
Sbjct: 180 NGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGIS 239
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y L+++L + + + M I+ ++ + LC GK EA
Sbjct: 240 PDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDV 299
Query: 184 MDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+D + +P VV+Y L+ CL S + A +F+ M N +PN+++ N ++ Y
Sbjct: 300 VDMMIIRGVEPNVVTYNALMDGHCLQS-EMDEAVKVFDTMVHNGYAPNVISYNTLINGYC 358
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ ++A LF+EM + +IP+ T+NT++ R D ++
Sbjct: 359 KIQRMDKATYLFEEMCQKE------------LIPNTVTYNTLMHGLCHVGRLQDAIALFH 406
Query: 302 RMLHHG 307
M+ HG
Sbjct: 407 EMVAHG 412
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/218 (18%), Positives = 84/218 (38%), Gaps = 16/218 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+TV Y ++ L G +++ + M + + PD+ Y +L
Sbjct: 380 PNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQI---------------PDLATYRILL 424
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ ++ + A +L+ ++ P Y +V++ M G+ + F + K
Sbjct: 425 DYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLR 484
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y +++N L R G DEA +M+ G Y + + L + A+
Sbjct: 485 PNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQL 544
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
+ ++ V + T L++ D Q+ I ++
Sbjct: 545 LQEMLARGFSADVSTTTLLVEMLCDDKLDQSVKQILSE 582
>gi|255660954|gb|ACU25646.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 375
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 137/283 (48%), Gaps = 15/283 (5%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ ++ PD VVYNA+LN R + + F + + + +G + S +++ ++M + GK +
Sbjct: 18 ESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNGKVD 76
Query: 110 LVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
V + +++S ++ +++ Y +LV+ + G D+++ +E E++G V A Y +
Sbjct: 77 EVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMI 136
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CS 227
LC + AL ++ + K KP V Y LI + + ++A +F +M CS
Sbjct: 137 NGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCS 196
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P ++T N ++ + +F EA L +E+ + KGL P + T++ ++
Sbjct: 197 PTIITYNTLINGLCKKEMFGEAYNLVKELLD-----------KGLD-PGVITYSMLMKGL 244
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ + + ++ ++ G + + H +I GK++L
Sbjct: 245 CLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQL 287
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 123/292 (42%), Gaps = 29/292 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D++ Y + + G+I + S+ L + K G L D Y+A++N
Sbjct: 93 DSITYGILVHGFCKNGYIDK------SLHVLEMAEQKGGVL---------DAFAYSAMIN 137
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ + A +VL + + G KP+ Y ++ ++ K+ FR++ + P
Sbjct: 138 GLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSP 197
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ Y L+N L ++ EA + V+++ +G+ Y L + LC K E AL
Sbjct: 198 TIITYNTLINGLCKKEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLW 257
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
+++ KP V + LI G +Q A ++ M + +PNLV+ N +++ + +
Sbjct: 258 NQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKYAPNLVSHNTLMEGFYKD 317
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
G A+ ++ + + + PDI ++N L + R D
Sbjct: 318 GDIRNALVIWARILRNG------------LEPDIISYNITLKGLCSCNRISD 357
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/137 (19%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D L+P ++ Y+ ++ + E A + Q+ +G KP + +++ + + G
Sbjct: 224 ELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVG 283
Query: 107 KYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K L + + + Y PN +++ L+ +++G A+ + R G+ Y
Sbjct: 284 KMQLALSLYFDMNRWKYAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343
Query: 166 DLARCLCSAGKCEEALM 182
+ LCS + +A++
Sbjct: 344 ITLKGLCSCNRISDAIL 360
>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 806
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 145/347 (41%), Gaps = 59/347 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y ++ ++ + G + D R L K EP + VYNA++
Sbjct: 212 PDDVSYTTVISSMCKLGDV-------DKARELAMK-------------FEPVVPVYNALI 251
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYI 123
+ + +++ AF ++ ++ +G P+ +Y V+ + G L F R +
Sbjct: 252 HGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCR 311
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + L+ + G+ +AV M R G+ + Y L LCS G +EA+
Sbjct: 312 PNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISV 371
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+++ K + +P V +Y+ +I SG++ +A +N+M N C PN+V MV +
Sbjct: 372 WNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQ 431
Query: 243 HGLFEEAMKLFQEMAEDS--------NHINREYDKKGLV---------------IPDIYT 279
+F++A L M D N+ + + G V +P+I T
Sbjct: 432 MSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRT 491
Query: 280 FNTMLD----------ACA----AEKRWDDLELVYKRMLHHGLHFNA 312
+N +LD AC E+R + + V + +G FN
Sbjct: 492 YNELLDGLFRANAFREACGLIRELEERKVEFDCVTYNTIMYGFSFNG 538
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 24/252 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
LEP++ YN +L A + + +GA +L ++ +G P +Y V+ M G +
Sbjct: 175 LEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKAR 234
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
E K + P Y L++ + +E + EA + +M RG+ + Y + CL
Sbjct: 235 ELAMKFE----PVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLS 290
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
G E +L ++ +P V ++T LI+ G + +A ++N M + SPN+V
Sbjct: 291 DMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVV 350
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML------- 284
N ++ G +EA+ ++ +M +DS + P++ T++T++
Sbjct: 351 AYNTLIHGLCSDGNMDEAISVWNQMEKDS------------IRPNVTTYSTIIYGFAKSG 398
Query: 285 DACAAEKRWDDL 296
D +A + W+ +
Sbjct: 399 DLVSACETWNKM 410
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/287 (20%), Positives = 130/287 (45%), Gaps = 19/287 (6%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP + +YN VL+A + + ++ + +K +G +P+ TY ++++ + GK + +
Sbjct: 141 EPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGACK 200
Query: 114 FFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++ K P+ ++Y +++++ + G D+A E +Y L +C
Sbjct: 201 LLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARELAMKFEP-----VVPVYNALIHGVC 255
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
+ +EA M+++ P V+SY+ +I D GN++ + +F +M C PN+
Sbjct: 256 KECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQ 315
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T ++K + G +A+ L+ M + V P++ +NT++ ++
Sbjct: 316 TFTSLIKGFFVRGRVGDAVGLWNLMIREG------------VSPNVVAYNTLIHGLCSDG 363
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
D+ V+ +M + N + +I +++G + TW +
Sbjct: 364 NMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKM 410
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 104/239 (43%), Gaps = 21/239 (8%)
Query: 113 EFFRKVQKS--YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
E+F+ + S + L Y+ +++ L R + D ++ M+ + S L+ + +C
Sbjct: 59 EYFKSLSNSGTFKHTHLTYETMIDKLGRNNEMDGVSYLLQQMKLENVPCSQELFQFVIKC 118
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPN 229
+ E+ L +I + +P V Y ++ A L + ++N MK+ PN
Sbjct: 119 YRRSNLGEQGLKMFYRIREFGCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPN 178
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAE---DSNHIN-----------REYDK-KGLVI 274
+ T N+++KA ++G + A KL EM+ D + ++ + DK + L +
Sbjct: 179 VFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARELAM 238
Query: 275 ---PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
P + +N ++ E R+ + + M+ G+ N + +I S G VEL
Sbjct: 239 KFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVEL 297
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/242 (19%), Positives = 94/242 (38%), Gaps = 22/242 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y + L Q + FD+ID+M S P ++ +N +
Sbjct: 417 PNVVVYTCMVDVLCQMSMFDQAFDLIDNMIS---------------DGCPPTVITFNNFI 461
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
R + E A VL Q+++ P+ TY +++ + + R++++ +
Sbjct: 462 KGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVE 521
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y ++ G + + + M GI C GK + A+
Sbjct: 522 FDCVTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVNAYCKLGKVKTAIKV 581
Query: 184 MDKICKVANKPL---VVSYTGLIQA-CLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKA 239
+D I A K ++++T ++ C G + Y+ +K PN+ T N++V+
Sbjct: 582 LDNIS--AEKEFRADIITHTIILWGICNWLGTEEAVVYLHEMLKRGIFPNIATWNVLVRG 639
Query: 240 YL 241
+
Sbjct: 640 FF 641
>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 92/366 (25%), Positives = 147/366 (40%), Gaps = 43/366 (11%)
Query: 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACV 68
A S+ + G G ++EL V M+ + +EP + YN +LN V
Sbjct: 134 AANSLIKSFGSLGMVEELLWVWRGMK---------------ENGVEPSLFTYNFLLNGLV 178
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIPNAL 127
E A VL+ ++ P TY +++ GK +E FR ++ ++ P+ +
Sbjct: 179 NSVFIESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDMELRNVAPDKI 238
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
Y L+ + EG D +S +M+ G+ Y + LC GKC E +K+
Sbjct: 239 TYMTLIQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKM 298
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLF 246
+ K V YT LI + GN+ A +F +MK P++VT ++V + G
Sbjct: 299 IQKGCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEGLEPDVVTYGVVVNCMCKSGRL 358
Query: 247 EEAMK---------------LFQEMAEDSNHINR---------EYDKKGLVIPDIYTFNT 282
+EAM+ L+ + + R E KKG PD Y +N
Sbjct: 359 DEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKKG-CPPDSYCYNA 417
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARAD 342
++DA A + D+ +KRM G + MI R K E W+ +
Sbjct: 418 LIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGLFREHKNEEALKMWDMMIDKG 477
Query: 343 RITPPA 348
ITP A
Sbjct: 478 -ITPTA 482
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 3/213 (1%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
LEPD+V Y V+N + + + A L+ + G +A Y +++ + G+ +
Sbjct: 338 LEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAE 397
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F + V+K P++ Y L++ L + GKTDEA++ + ME G + Y + L
Sbjct: 398 KLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGL 457
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGL-IQACLDSGNIQNAAYIFNQMKNFCSPNL 230
K EEAL D + P ++ L I CL SG + A + +++
Sbjct: 458 FREHKNEEALKMWDMMIDKGITPTAAAFRALSIGLCL-SGKVARACKLLDELAPMGVIPE 516
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
M+ + G +EA KL + I
Sbjct: 517 TAFEDMLNVLCKAGRIKEACKLADGFVDRGREI 549
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 17/207 (8%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+ + Y S+ LG+AG + E + + M K G PD YNA+++
Sbjct: 376 NAMLYSSLIDGLGKAGRVHEAEKLFEEM-------VKKGC--------PPDSYCYNALID 420
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYIP 124
A + + + A ++++ +G + TY +++ + K + + + K P
Sbjct: 421 ALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGLFREHKNEEALKMWDMMIDKGITP 480
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
A A++ L L GK A ++++ G++ A + D+ LC AG+ +EA
Sbjct: 481 TAAAFRALSIGLCLSGKVARACKLLDELAPMGVIPETA-FEDMLNVLCKAGRIKEACKLA 539
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGN 211
D + T LI A +GN
Sbjct: 540 DGFVDRGREIPGRVRTVLINALRKAGN 566
>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Brachypodium distachyon]
Length = 791
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 151/322 (46%), Gaps = 31/322 (9%)
Query: 24 KELFDVIDSMRSLPKKKFKTGT-LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQ 82
KE+ ++DSMR K G L+R+ YN +++ C RR ++ A V +
Sbjct: 229 KEVLALVDSMR-------KDGIPLDRY---------TYNTLISCCRRRALYKEAAKVFDE 272
Query: 83 LKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGK 141
++ G +P T +++V +Y+ +++++ P + + Y L+++ ++G
Sbjct: 273 MRAAGFEPDKVTLNSLLDVYGKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGL 332
Query: 142 TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
+EA E+ME +GI Y L L AGK + A+ +++ + KP + +Y
Sbjct: 333 LEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNA 392
Query: 202 LIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
LI+ G +F+++++ P++VT N ++ + ++GL E +F+EM
Sbjct: 393 LIKLHGVRGKFPEMMIVFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEM---- 448
Query: 261 NHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMIL 320
KK +P+ T+ +++ + + +D +YKRM+ G+H + + ++
Sbjct: 449 --------KKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLS 500
Query: 321 DASRAGKVELLEITWEHLARAD 342
+R G+ E E + + D
Sbjct: 501 ALARGGRWEQAEKLFAEMENLD 522
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 128/311 (41%), Gaps = 50/311 (16%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV------------ 101
+PD Y A+++A R ++ A V +++ G P+ TY +V+ V
Sbjct: 173 DPDASAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVL 232
Query: 102 --------------------MLACGKYNLVYEFFRKV-----QKSYIPNALAYKVLVNTL 136
+++C + +Y+ KV + P+ + L++
Sbjct: 233 ALVDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVY 292
Query: 137 WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV 196
+ + DEA+ +++ME+ G S Y L G EEA +++ +P V
Sbjct: 293 GKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDV 352
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
++YT L+ +G I A +N+M +N C PNL T N ++K + G F E M +F E
Sbjct: 353 ITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDE 412
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
+ + +PD+ T+NT+L ++ V+K M G +
Sbjct: 413 I------------RSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTY 460
Query: 316 LRMILDASRAG 326
+ +I SR G
Sbjct: 461 VSLISSYSRCG 471
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 88/399 (22%), Positives = 152/399 (38%), Gaps = 93/399 (23%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKKFKTGTLERW------------ 49
PD V + ++ GQ G E+ V M+ +P++ + +
Sbjct: 420 PDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEI 479
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY--------- 95
+ + PDI YNAVL+A R +WE A + +++ +P +Y
Sbjct: 480 YKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYAN 539
Query: 96 -----------------------GLVMEVMLACGKYNLVYEF------FRKVQKSYIPNA 126
GLV ++L K N + + R+ + S N
Sbjct: 540 AKKLDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSDTEKAFLELRRRRCSLDINV 599
Query: 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK 186
L +++ + G + + M+ I S A Y L G CE+ + +
Sbjct: 600 L--NAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKCENILTE 657
Query: 187 ICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS---PNLVTCNIMVKAYLEH 243
I +P SY +I A G ++ A+ +F++MK CS P++VT NI VK+Y+ +
Sbjct: 658 IKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMK--CSGLVPDIVTYNIFVKSYVAN 715
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
+FEEA+ L + M P+ T+NT+L + R D + +
Sbjct: 716 SMFEEAIDLVRYMVTHG------------CKPNERTYNTILQEYCSHGRIADGKSFISNL 763
Query: 304 --LHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
LH G+ S+ + LLE+ +H +R
Sbjct: 764 PELHPGI--------------SKREQQRLLELLAKHTSR 788
>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Brachypodium distachyon]
Length = 627
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 142/309 (45%), Gaps = 31/309 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ L A + + +++ M + +EP++VVY+ +L
Sbjct: 146 PDVVTYGTLIRGLCDAADVDKAVELLREM---------------CESGIEPNVVVYSCLL 190
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ +WE V +++ +G +P Y +++ + GK + K+ ++
Sbjct: 191 QGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLE 250
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y VL+N++ +EG EA+S +M +G+ A Y L L + +EA+
Sbjct: 251 PNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGL 310
Query: 184 MDKIC--KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
++++ + +P VV++ +I +G ++ A + + M +N C+ NLVT N+++
Sbjct: 311 LEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGL 370
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
L ++AM+L EMA + PD +T++ +++ + D E +
Sbjct: 371 LRVHKVKKAMELMDEMASSG------------LEPDSFTYSILINGFCKMWQVDRAESLL 418
Query: 301 KRMLHHGLH 309
+M G+
Sbjct: 419 SKMRRDGIE 427
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 115/252 (45%), Gaps = 14/252 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D V YN VL A R+ A L ++ +P+A +Y +M + A +
Sbjct: 77 DAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLL 136
Query: 116 RKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
R +Q S + P+ + Y L+ L D+AV + +M GI + +Y L + C A
Sbjct: 137 RDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKA 196
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTC 233
G+ E +++ +P VV YTGLI + G ++ A + ++ M+ PN+VT
Sbjct: 197 GRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTY 256
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N+++ + + G +EAM L M E KG+ + D T+NT++ +
Sbjct: 257 NVLINSMCKEGSVKEAMSLRNNMLE-----------KGVAL-DAVTYNTLITGLSGVLEM 304
Query: 294 DDLELVYKRMLH 305
D+ + + M+H
Sbjct: 305 DEAMGLLEEMIH 316
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 130/312 (41%), Gaps = 40/312 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + +L + G +K+ V+D M +ER LEP++V YN ++
Sbjct: 216 PDVVMYTGLIDSLCREGKVKKATQVMDKM------------MERG---LEPNVVTYNVLI 260
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GL--VMEVMLACGKYNLVYEFFRK 117
N+ + + A + + ++G A TY GL V+E+ A G L+ E
Sbjct: 261 NSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMG---LLEEMIHG 317
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+ PN + + +++ L + G+ +A + M G + + L L K
Sbjct: 318 -ETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKV 376
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIM 236
++A+ MD++ +P +Y+ LI + A + ++M+ + P LV +
Sbjct: 377 KKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPL 436
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ A E G+ E+A F EM H N + D+ ++TM+ +
Sbjct: 437 LAALCEQGMMEQARNFFDEM-----HKNCKL--------DVVAYSTMIHGACRLRDRKSA 483
Query: 297 ELVYKRMLHHGL 308
E K ML GL
Sbjct: 484 EEFLKHMLDEGL 495
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 134/333 (40%), Gaps = 64/333 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR----SLPKKKFKT------GTLE------- 47
P+ V Y + ++ + G +KE + ++M +L + T G LE
Sbjct: 251 PNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGL 310
Query: 48 -----RWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
+ +EP++V +N+V++ + + AF V + + G + T+ L++ +
Sbjct: 311 LEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGL 370
Query: 103 LACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
L K E ++ S + P++ Y +L+N + + D A S + M R GI
Sbjct: 371 LRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPEL 430
Query: 162 ALYYDLARCLCSAGKCEEA---LMQMDKICK---VANKPLV------------------- 196
Y L LC G E+A +M K CK VA ++
Sbjct: 431 VHYIPLLAALCEQGMMEQARNFFDEMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHM 490
Query: 197 ---------VSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLF 246
V+Y+ LI +SG++ A + QM + P++ + ++K Y G
Sbjct: 491 LDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDT 550
Query: 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
E+ ++L +EM ++ + +I IYT
Sbjct: 551 EKVLELIREMTAKDIALDSK------IISTIYT 577
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 76/173 (43%), Gaps = 13/173 (7%)
Query: 158 VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAA 216
V A Y + LC G C +A + + ++ +P VSYT L++A C + Q
Sbjct: 75 VRDAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVG 134
Query: 217 YIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
+ + + P++VT +++ + ++A++L +EM E + P+
Sbjct: 135 LLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESG------------IEPN 182
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ ++ +L RW+ + V++ M G+ + + +I R GKV+
Sbjct: 183 VVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVK 235
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/117 (17%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D+V Y+ +++ R + + A L+ + +G P + TY +++ + G
Sbjct: 463 DVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVL 522
Query: 116 RKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+++ S ++P+ + L+ +G T++ + + +M + I + + + CL
Sbjct: 523 KQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREMTAKDIALDSKIISTIYTCL 579
>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 592
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 139/347 (40%), Gaps = 34/347 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL---------ERWDPRL 53
PDT + ++ L G I E + D M GTL R RL
Sbjct: 142 PDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRL 201
Query: 54 ---------EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
EP+++ YN +++ + +Q A + ++ +G P+ +TY ++ +
Sbjct: 202 LRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCK 261
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
++ V ++ S I PN + + LV+ L +EG A V+ M +RG+
Sbjct: 262 FSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVT 321
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y L C + +EA D + + P V+SY+ LI I A Y+F +M
Sbjct: 322 YTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMC 381
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ PN+VT N ++ G +A+ LF EM IPD+ T+
Sbjct: 382 QRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQ------------IPDLVTYRI 429
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+LD + D + K + L + + + +I R G++E
Sbjct: 430 LLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELE 476
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 76/347 (21%), Positives = 149/347 (42%), Gaps = 54/347 (15%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLER-WDPRLEPDIVV 59
M Y ++ +LG + L VI+S L + F L + + +PD
Sbjct: 87 MKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTAT 146
Query: 60 YNAVLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK- 117
+ ++ CV K E A + ++ +G +P+ TYG ++ + G R
Sbjct: 147 FTTLIRGLCVEGKIGE-ALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSM 205
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK- 176
VQK+ PN + Y +++ L+++ + +EA++ +M +GI + + Y + LC +
Sbjct: 206 VQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEW 265
Query: 177 -----------------------------CEEALMQM-----DKICKVANKPLVVSYTGL 202
C+E ++ + D + + +P VV+YT L
Sbjct: 266 KHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTAL 325
Query: 203 IQA-CLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
+ CL S + A +F+ M + C+PN+++ + ++ Y + ++AM LF+EM +
Sbjct: 326 MDGHCLRS-EMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQ-- 382
Query: 261 NHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
RE ++P+I T+NT++ R D ++ M+ G
Sbjct: 383 ----RE------LVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASG 419
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 113/258 (43%), Gaps = 17/258 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V + ++ L + G + DV+D M ++R +EPD+V Y A++
Sbjct: 282 PNVVIFTTLVDALCKEGMVTIAHDVVDVM------------IQRG---VEPDVVTYTALM 326
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN-LVYEFFRKVQKSYI 123
+ R + + A V + ++G P+ +Y ++ + + +Y F Q+ +
Sbjct: 327 DGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELV 386
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L++ L G+ +A++ +M G + Y L LC ++A+
Sbjct: 387 PNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAM 446
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+ I P + SY +I G ++ A +F+ + + P++ T IM+
Sbjct: 447 LKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCL 506
Query: 243 HGLFEEAMKLFQEMAEDS 260
GL EA KLF+EM D
Sbjct: 507 QGLLAEATKLFREMNTDG 524
>gi|218200855|gb|EEC83282.1| hypothetical protein OsI_28637 [Oryza sativa Indica Group]
Length = 662
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 106/238 (44%), Gaps = 14/238 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+PD+ +N +L+A + E F +L Q+K +G +P +YG +++
Sbjct: 305 FKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAK 364
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E+ ++ + PN Y L+ R G A+ AVE M+ GI + Y L +
Sbjct: 365 EYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWM 424
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
C AG EEA + + V+ YT +IQ G + A F +M++ SPN
Sbjct: 425 CHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNK 484
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
+T ++ AY + G EEA KLF EM VIPD T+ T++ C+
Sbjct: 485 LTYTTLMYAYSKSGNSEEASKLFDEMVGSG------------VIPDNITYGTLIARCS 530
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 95/228 (41%), Gaps = 21/228 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS--LPKKKFKTGTL---------------- 46
PD + ++ G ++E F ++D M++ L GT+
Sbjct: 307 PDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEY 366
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E D L+P++ +YNA++ R GA ++ +K G +P+ TYG +M M
Sbjct: 367 LTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCH 426
Query: 105 CGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G F + +++ + + Y +++ + GK EAV+ E+M RGI +
Sbjct: 427 AGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLT 486
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
Y L +G EEA D++ P ++Y LI C + G
Sbjct: 487 YTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSEKGG 534
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 78/164 (47%), Gaps = 1/164 (0%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF-FRKV 118
Y A++ A + + + F +L +L + G +P+ TY ++M+ + G+ + R
Sbjct: 14 YTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRME 73
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
Q P+ + + +L+N L R + E +++ME+ G+ + +Y +L C G C
Sbjct: 74 QGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCS 133
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+AL D++ KP V+Y + +A G ++ A I M
Sbjct: 134 QALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDM 177
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 124/295 (42%), Gaps = 67/295 (22%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E W L+P +V YN +++A + + E AF + +++Q G PS T+G+++ +
Sbjct: 36 ELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGE 95
Query: 107 KYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
++ V +++++ + PN + Y L+ R+G +A+ ++M + + +A Y
Sbjct: 96 RFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYN 155
Query: 166 DLARCLCSAGKCEEALMQMDKI--------CKVANKPL------------VVSYTG---- 201
+A+ LC G+ E A ++ + C + N + VVS T
Sbjct: 156 LIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVT 215
Query: 202 --------LIQACL----DSGNIQNAAYIF------------------NQMKNFCSPNLV 231
L+ AC+ G Q A I+ + + +
Sbjct: 216 RGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGKYMKEATKVIQTMLNKGIELDSI 275
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
T NIM++ + EEA+KL +M ++G PD++TFNT+L A
Sbjct: 276 TYNIMIRGCCKDSKMEEAIKLHGDMT-----------RRGFK-PDLFTFNTLLHA 318
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 113/296 (38%), Gaps = 40/296 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
P+ V Y + + GH + + D M + K K G +ER +
Sbjct: 114 PNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERI 173
Query: 53 LEP----DIVVYNAVLNACV-----RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
LE + V+ + N V R ++ E + ++ +G +P+ M +
Sbjct: 174 LEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELC 233
Query: 104 ACGKYN-LVYEFFRKVQKS-YIPNA----------------LAYKVLVNTLWREGKTDEA 145
GK+ V +F+ + K Y+ A + Y +++ ++ K +EA
Sbjct: 234 KGGKHQEAVGIWFKTLNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEA 293
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+ DM RRG + L C+ GK EE +D++ +P +VSY +I
Sbjct: 294 IKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDG 353
Query: 206 CLDSGNIQNAA-YIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
+ +I+ A Y+ M PN+ N ++ Y +G A+ + M +
Sbjct: 354 HCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNG 409
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 74/185 (40%), Gaps = 13/185 (7%)
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N +Y ++ L + GK D + ++ R G+ + Y L LC +G+ EEA
Sbjct: 10 NEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLK 69
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
++ + P VV++ LI + +M+ SPN V N ++ +
Sbjct: 70 GRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRK 129
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G +A++LF EM + P T+N + A E + E + + M
Sbjct: 130 GHCSQALRLFDEMVLKK------------MKPTAVTYNLIAKALCKEGEMERAERILEDM 177
Query: 304 LHHGL 308
L G+
Sbjct: 178 LSIGM 182
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 153 ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI 212
E R + + Y + + LC AGK + + ++ + +P VV+Y L+ A SG +
Sbjct: 3 ESRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRV 62
Query: 213 QNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
+ A + +M + +P++VT I++ F E + QEM +
Sbjct: 63 EEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQ 109
>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 592
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 118/257 (45%), Gaps = 14/257 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PD + N V+N+ K F VL + + G +PS T+ +++ + G
Sbjct: 107 IKPDTFILNVVINSLCHLKLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAV 166
Query: 113 EFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E V+K+ Y + Y VL+N L + GKT EAV + ME R + +Y + L
Sbjct: 167 ELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGL 226
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNL 230
C G EAL ++ KP +V+YT LIQ + G + A + ++ MK P+L
Sbjct: 227 CKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDL 286
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+ NI+V + G +A + M +PD++T+N+++D +
Sbjct: 287 QSLNILVDVLCKEGKIMQAKSVIGFMILVGE------------VPDVFTYNSLIDRYCLQ 334
Query: 291 KRWDDLELVYKRMLHHG 307
+ D+ V++ M+ G
Sbjct: 335 NQMDEATRVFELMVSRG 351
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 136/330 (41%), Gaps = 35/330 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L + G + E + LE ++P++V Y ++
Sbjct: 214 PNVVVYSTVMDGLCKDGLVSEALGL---------------CLEMSGKGIKPNLVTYTCLI 258
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY---NLVYEFFRKVQKS 121
+W+ A +L ++ + G P + ++++V+ GK V F V +
Sbjct: 259 QGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGE- 317
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+P+ Y L++ + + DEA E M RG + Y L C +A+
Sbjct: 318 -VPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAM 376
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAY 240
+D++ KV P VV++T LI G A +F M + PNL TC I++
Sbjct: 377 HLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGL 436
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELV 299
+ L EA+ LF M + + +N I ++ +LD C+A K LEL
Sbjct: 437 CKSQLLSEALSLFHAMEKSNLDLN------------IVIYSIILDGMCSAGKLNTALEL- 483
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + GL N + MI ++ G ++
Sbjct: 484 FSCLPAKGLQINVYAYTIMINGFAKQGLLD 513
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++ +L+ + + A + +++ + Y ++++ M + GK N E
Sbjct: 424 PNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALEL 483
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
F + K N AY +++N ++G D+A + +ME G + + Y
Sbjct: 484 FSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTY 534
>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
Length = 556
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/337 (22%), Positives = 142/337 (42%), Gaps = 40/337 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y ++ L ++G++++ ++++ M R + PDIV YN ++
Sbjct: 130 PDIFTYNTVISGLCKSGNLEKARELLEEMI-------------RRGGKSAPDIVTYNTLI 176
Query: 65 NACV-RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
NA + + E A +L +K G P TY ++ + G+ E + + S
Sbjct: 177 NAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMSCS-- 234
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + L++ + G A+ +E+M R I+ Y L LC G+ + A
Sbjct: 235 PDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYL 294
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-----------NFCSPNLVT 232
+++I + P V++YT L+ SG I+ A + +M N P L T
Sbjct: 295 LEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPP-LFT 353
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
NI++ ++ G +A+ L ++ + R Y +PD+ T+NT++D R
Sbjct: 354 YNIVLGGLIKDGSISKAVSLISDL------VARGY------VPDVVTYNTLIDGLCKANR 401
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + M G N ++ R G+V+
Sbjct: 402 VREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVD 438
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/349 (21%), Positives = 146/349 (41%), Gaps = 42/349 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y SI L AG + E +++ +M PD+V +N +L
Sbjct: 203 PDVITYNSIIHALCVAGRVVEAAEILKTMSC------------------SPDLVTFNTLL 244
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + A VL+++ ++ P TY +++ + G+ + + + V++ YI
Sbjct: 245 DGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYI 304
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA---------LYYDLARCLCSA 174
P+ +AY LV+ L + G+ +EA V++M R I+ Y + L
Sbjct: 305 PDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKD 364
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
G +A+ + + P VV+Y LI + ++ A + ++M + C PN VT
Sbjct: 365 GSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTL 424
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
+V G ++A L EM+ + P++ + +++D R
Sbjct: 425 GSVVFGLCRVGRVDDAWSLVVEMSRKRHA------------PNVVVYTSLIDGLCKSDRM 472
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARA 341
DD +V M G+ + + ++I+ G+V E + + E +AR
Sbjct: 473 DDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARG 521
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 131/292 (44%), Gaps = 24/292 (8%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D+ YN +L+ V+ V + L G P+ T+ +++ G+ EF
Sbjct: 26 DVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRALEFL 85
Query: 116 RKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
R + + S P+ + L++ L+++G D+AV E+ME + Y + LC +
Sbjct: 86 RALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKS 145
Query: 175 GKCEEALMQMDKICKVANK--PLVVSYTGLIQA--CLDSGNIQNAAYIFNQMK-NFCSPN 229
G E+A ++++ + K P +V+Y LI A C D G+++ A I + MK +P+
Sbjct: 146 GNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKD-GDVEEALEILDGMKLAGPAPD 204
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CA 288
++T N ++ A G EA ++ + M+ PD+ TFNT+LD C
Sbjct: 205 VITYNSIIHALCVAGRVVEAAEILKTMS---------------CSPDLVTFNTLLDGFCK 249
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
A LE V + M + + + ++ R G+V++ E + R
Sbjct: 250 AGMLPRALE-VLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVR 300
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 13/181 (7%)
Query: 109 NLVYEFFR--KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
+L +FF Q Y + +Y L++ L + G +D+ G + +
Sbjct: 8 DLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKI 67
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF- 225
L R C AG+ AL + + + + P V + LI GN A +F M++
Sbjct: 68 LIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSR 127
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
+P++ T N ++ + G E+A +L +EM + G PDI T+NT+++
Sbjct: 128 VNPDIFTYNTVISGLCKSGNLEKARELLEEMIR----------RGGKSAPDIVTYNTLIN 177
Query: 286 A 286
A
Sbjct: 178 A 178
>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 477
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 130/299 (43%), Gaps = 25/299 (8%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P++ N ++N AF V + ++G P A T +++ + CG+
Sbjct: 124 VTPNLCTLNILINCFCHLAHITFAFSVFANILKRGYHPDAITLNTLIKGLCFCGEIKRAL 183
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F KV + + + ++Y L+N L + G+T + +E + +Y + CL
Sbjct: 184 YFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCL 243
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C + +A ++ P V +Y LI GN++ A + N+MK +P++
Sbjct: 244 CKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDV 303
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAE------------------DSNHINREYD---- 268
T NI++ A + G +EA+ LF+EM ++H+ R
Sbjct: 304 YTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKK 363
Query: 269 -KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
K+ + PD+Y++ +LDA R ++ + ++ +L G H N + + MI +AG
Sbjct: 364 MKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAG 422
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 135/306 (44%), Gaps = 31/306 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V+Y ++ L +AG K V +R L K PD+V+Y +++
Sbjct: 197 DQVSYGTLINGLCKAGETKA---VARLLRKLEGHSVK------------PDVVMYTTIIH 241
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIP 124
+ K+ A + ++ +G P+ TY ++ G + +++ K+ P
Sbjct: 242 CLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINP 301
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ + +L++ L +EGK DEA+S E+M+ + + + Y L LC E A+
Sbjct: 302 DVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALC 361
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLE 242
K+ + +P V SYT L+ A G ++NA F + K + N+ T N+M+ +
Sbjct: 362 KKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGY-HLNVRTYNVMINGLCK 420
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
GLF + M L +M + KG +PD TF T++ A + D E +
Sbjct: 421 AGLFGDVMDLKSKM-----------EGKG-CMPDAITFKTIICALFEKDENDKAEKFLRE 468
Query: 303 MLHHGL 308
M+ GL
Sbjct: 469 MIARGL 474
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 21/175 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLERW--- 49
PD + + LG+ G I E + + M+ SL K LER
Sbjct: 301 PDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIAL 360
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ ++PD+ Y +L+A + + E A Q L +G + TY +++ +
Sbjct: 361 CKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCK 420
Query: 105 CGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
G + V + K++ K +P+A+ +K ++ L+ + + D+A + +M RG++
Sbjct: 421 AGLFGDVMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKFLREMIARGLL 475
>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 129/285 (45%), Gaps = 14/285 (4%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + +E D+ VY ++++ R + A + ++ +G PSA TYG ++ + G
Sbjct: 324 EMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAG 383
Query: 107 KYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ ++Q I N + + L++ G DEA+ ME++G+ Y
Sbjct: 384 QMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYN 443
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+A LC + +EA + + + P +S+T LI GN A +F +M+
Sbjct: 444 SIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEK 503
Query: 226 CS-PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
+ PN++T N+++ Y + G +EA KL E+ + +GL IPD+YT +++
Sbjct: 504 GNVPNIITYNVLIDGYSKRGNMKEAHKLKDEL-----------ENRGL-IPDVYTCTSLI 551
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + D ++ M GL N + MI S+ G+ E
Sbjct: 552 HGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSE 596
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 122/282 (43%), Gaps = 27/282 (9%)
Query: 53 LEPDIVVYN--AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
L+ ++ VY+ VL+ +R E ++ ++ +G K + TY +E
Sbjct: 223 LDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGG 282
Query: 111 VYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
V E ++K + N + Y +L++ GK +EA E+M +GI +Y +
Sbjct: 283 VAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIIS 342
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSP 228
C C +G + AL+ D++ P +Y LI +G ++ A + N+M+
Sbjct: 343 CNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDL 402
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKL---------------FQEMAEDSNHINREYDKKGL- 272
N V N ++ Y E G+ +EA++L + +A +NR+ + KGL
Sbjct: 403 NPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLL 462
Query: 273 -------VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
V P+ +F T++D E + + + V++ M G
Sbjct: 463 FSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKG 504
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 84/172 (48%), Gaps = 1/172 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
LE D+ YN++ + + + + A +L + ++G P+ ++ ++++ G +
Sbjct: 435 LESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAK 494
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
FR+++ K +PN + Y VL++ + G EA +++E RG++ L
Sbjct: 495 RVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGE 554
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
C GK + AL D++ + P VV+YT +I G + A ++++MK
Sbjct: 555 CIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMK 606
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 69/140 (49%), Gaps = 3/140 (2%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+I+ YN +++ +R + A + +L+ +G P T ++ GK ++ +
Sbjct: 507 PNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKL 566
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F ++ Q+ +PN + Y +++ L ++G+++EA ++M+ G+ +Y L L S
Sbjct: 567 FDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHS 626
Query: 174 AGKCEEALMQMDKICKVANK 193
A E MQ+ ANK
Sbjct: 627 AD--ESISMQIQGSQVKANK 644
>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
Group]
gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
Length = 796
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 89/406 (21%), Positives = 172/406 (42%), Gaps = 73/406 (17%)
Query: 1 MSSY---PDTVAYRSIAVTLGQAGHIKELFDVIDSMR----SLP-------------KKK 40
M++Y PD Y +AV L QAG + E F + D M +LP K +
Sbjct: 304 MTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWR 363
Query: 41 FKTGTL----ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG 96
+ L E D ++P +V +N V+ + + + E A L+++ ++G P TY
Sbjct: 364 CSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYN 423
Query: 97 LVMEVMLACGK---------------------------YNLV----YEFFRKV-----QK 120
+++ G YNL YE ++ Q+
Sbjct: 424 TLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQR 483
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
++P+ ++Y ++ ++E + A+ + M R ++ S + Y L + LC + +EA
Sbjct: 484 GFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEA 543
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
+ +++++ + P +Y +I A G+++NA N+M +N P++VTCN ++
Sbjct: 544 IDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNG 603
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
HG ++A+KLF+ E + D+ T+NT++ + D
Sbjct: 604 LCLHGKLDKALKLFESWVEKGKKV------------DVITYNTLIQSMCKVGDVDTALHF 651
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRIT 345
+ M GL +A + ++ S AG+ E LA + +++
Sbjct: 652 FDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLS 697
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 109/242 (45%), Gaps = 16/242 (6%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
RL P+ +N +++ + A L ++ G P A TY ++ G
Sbjct: 203 RLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEA 262
Query: 112 YEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
++++ I P Y LV+ R G +A VE M G Y LA
Sbjct: 263 RALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVG 322
Query: 171 LCSAGKCEEALMQMDKICKVANK-PLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSP 228
LC AGK +EA D++ +++ P VV+Y L+ AC +A + +M++ P
Sbjct: 323 LCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKP 382
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-C 287
LVT NI+VK+ + G EEA+ +++AE+ + PD+ T+NT++DA C
Sbjct: 383 TLVTHNIVVKSLCKEGKLEEALGKLEKIAEEG------------LAPDVITYNTLIDAYC 430
Query: 288 AA 289
A
Sbjct: 431 KA 432
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 139/341 (40%), Gaps = 90/341 (26%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGL--------------- 97
L PD V YN +LNA R+ A +L ++K+ G P+ TY
Sbjct: 239 LSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQAT 298
Query: 98 -VMEVMLACG------KYNL----------VYEFFRKVQK-----SYIPNALAYKVLVNT 135
V+E M A G YN+ V E FR + + +P+ + Y LV+
Sbjct: 299 KVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDA 358
Query: 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL 195
++ + +A+ +E+M +G+ + + + + LC GK EEAL +++KI + P
Sbjct: 359 CFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPD 418
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQMK----------------NFCS------------ 227
V++Y LI A +GN+ A + ++M N C
Sbjct: 419 VITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLH 478
Query: 228 --------PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
P+ V+ ++ AY + E A++L+ +M E +IP I T
Sbjct: 479 SPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERK------------LIPSIST 526
Query: 280 FNTMLDA-CAAEKRWDDL----ELVYKRMLHHGLHFNAKRH 315
+NT++ C E+ + + ELV K ++ +N H
Sbjct: 527 YNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIH 567
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 131/311 (42%), Gaps = 23/311 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ-GQKPSATTYGLVMEVMLACGKY--NLV 111
P + +A L+A R + A +L L+++ G +PS V+ +
Sbjct: 133 PTSPLADAALSAYARLRLPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQAS 192
Query: 112 YEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ FR ++ PN + +LV+T +G +A++ + M+ G+ A Y L
Sbjct: 193 LDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNA 252
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPN 229
C G EA + ++ + P +Y L+ A G I+ A + M + P+
Sbjct: 253 HCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPD 312
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
L T N++ + G +EA +L EM ++ +PD+ T+NT++DAC
Sbjct: 313 LRTYNVLAVGLCQAGKVDEAFRLKDEM-----------ERLSTALPDVVTYNTLVDACFK 361
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE-----LLEITWEHLARADRI 344
+ D + + M G+ H ++ + GK+E L +I E LA D I
Sbjct: 362 WRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLA-PDVI 420
Query: 345 TPPALIKERFC 355
T LI + +C
Sbjct: 421 TYNTLI-DAYC 430
>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 878
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 149/333 (44%), Gaps = 51/333 (15%)
Query: 3 SYPDTV-AYRSIAVTLGQAGHIKELFDVIDSMRS---LPK---------------KKFKT 43
Y TV A+ ++ G++G+ E V DSM+S +P +FK
Sbjct: 220 GYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVEFKK 279
Query: 44 GTLERWDPRL----EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM 99
+E +D L +PD + +N++L C R WE A + + +G TY ++
Sbjct: 280 -VVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLL 338
Query: 100 EVMLACGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ + G+ +L +E ++ K+ +PN + Y +++ + G+ D+A++ +M+ G+
Sbjct: 339 DAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVG 398
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
Y L G+ E+AL ++ + VV+Y L+ +
Sbjct: 399 LDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRV 458
Query: 219 FNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE---------------------- 255
F +MK SPNL+T + ++ Y + GL++EAM++F+E
Sbjct: 459 FEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCK 518
Query: 256 --MAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+ E S + E K+G + P++ T+N+++DA
Sbjct: 519 NGLVESSVTLLDEMTKEG-IRPNVVTYNSIIDA 550
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 62/318 (19%), Positives = 138/318 (43%), Gaps = 36/318 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ + G + + ++ + M KF L+R V YN +L
Sbjct: 364 PNVVTYSTMIDGYAKVGRLDDALNMFNEM------KFLGVGLDR---------VSYNTLL 408
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + ++E A V ++++ G + TY ++ +Y+ V F ++++ +
Sbjct: 409 SVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVS 468
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN L Y L++ + G EA+ + ++ G+ LY L LC G E ++
Sbjct: 469 PNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVESSVTL 528
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
+D++ K +P VV+Y +I A S + Q + +L +I+V+ +E
Sbjct: 529 LDEMTKEGIRPNVVTYNSIIDAFGRSASAQCVVDDSGETTALQVESL--SSIVVQEAIES 586
Query: 244 GLFEEA----MKLFQEMAEDSNHINREYDKKGL--------------VIPDIYTFNTMLD 285
++ +++F ++A + + K+ + + P++ TF+ +L+
Sbjct: 587 QAADKEDNRIIEIFGKLAAEKACEAKNSGKQEILCILGVFQKMHELKIKPNVVTFSAILN 646
Query: 286 ACAAEKRWDDLELVYKRM 303
AC+ ++D ++ + +
Sbjct: 647 ACSRCDSFEDASMLLEEL 664
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 14/200 (7%)
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA 191
+++TL R GK + A + + + G + + L +G C EA+ D +
Sbjct: 196 MISTLGRLGKVELAKAVFDTALKEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKSNG 255
Query: 192 NKPLVVSYTGLIQACLDSG-NIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEA 249
P +V+Y +I AC G + IF+ M N P+ +T N ++ GL+E A
Sbjct: 256 LMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAA 315
Query: 250 MKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH 309
+LF M + KG + DI+T+NT+LDA + D + M +
Sbjct: 316 RRLFSAMVD-----------KG-IDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNIL 363
Query: 310 FNAKRHLRMILDASRAGKVE 329
N + MI ++ G+++
Sbjct: 364 PNVVTYSTMIDGYAKVGRLD 383
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 17/213 (7%)
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERR--GIVGSAALYYDLARCLCSAGKCEEALMQMDK 186
Y L+ L G + +AV E RR G L + L GK E A D
Sbjct: 156 YTFLLRELGNRGDSAKAVRCFEFAVRRESGKNEQGKLASAMISTLGRLGKVELAKAVFDT 215
Query: 187 ICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGL 245
K V +++ LI A SG A +F+ MK N PNLVT N ++ A + G+
Sbjct: 216 ALKEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGV 275
Query: 246 -FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
F++ +++F M + V PD TFN++L C+ W+ ++ M+
Sbjct: 276 EFKKVVEIFDGMLSNG------------VQPDRITFNSLLAVCSRGGLWEAARRLFSAMV 323
Query: 305 HHGLHFNAKRHLRMILDASRAGKVEL-LEITWE 336
G+ + + ++ + G+++L EI E
Sbjct: 324 DKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSE 356
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/287 (19%), Positives = 122/287 (42%), Gaps = 44/287 (15%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V+Y ++ + G ++ DV M + +K D+V YNA+L
Sbjct: 400 DRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRK---------------DVVTYNALLA 444
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
++ +++ V +++K+ P+ TY +++V G Y E FR+ +++ +
Sbjct: 445 GYGKQYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKA 504
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL--CSAGKC----- 177
+ + Y L++ L + G + +V+ +++M + GI + Y + ++ +C
Sbjct: 505 DVVLYSALIDALCKNGLVESSVTLLDEMTKEGIRPNVVTYNSIIDAFGRSASAQCVVDDS 564
Query: 178 -EEALMQMDKICKVANKPLVVSYTG------LIQ---------AC--LDSGN--IQNAAY 217
E +Q++ + + + + S +I+ AC +SG I
Sbjct: 565 GETTALQVESLSSIVVQEAIESQAADKEDNRIIEIFGKLAAEKACEAKNSGKQEILCILG 624
Query: 218 IFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
+F +M PN+VT + ++ A FE+A L +E+ N +
Sbjct: 625 VFQKMHELKIKPNVVTFSAILNACSRCDSFEDASMLLEELRLFDNQV 671
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
+++P++V ++A+LNAC R +E A +L++L+ + +GL+M G V
Sbjct: 633 KIKPNVVTFSAILNACSRCDSFEDASMLLEELRLFDNQVYGVAHGLLM------GYRENV 686
Query: 112 Y----EFFRKVQKSYIPNALA-YKVLVNTLWREGKTDEAVSAVEDMERRGI 157
+ F +V+ A A Y L + LW G+ A V + +RR +
Sbjct: 687 WLQAQSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQV 737
>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 142/327 (43%), Gaps = 30/327 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P + ++ + G + ++D M+S L+ DIV+YN +
Sbjct: 201 PTVHLFTTLIRGFAKEGRVDSALSLLDEMKS---------------SSLDADIVLYNVCI 245
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-I 123
++ + + + A+ +++ G KP TY ++ V+ + + E F ++K+ +
Sbjct: 246 DSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRV 305
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P AY ++ GK DEA S +E +G + S Y + CL GK +EAL
Sbjct: 306 PCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKV 365
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+++ K A P + +Y LI +G + A + + M K PN+ T NIMV +
Sbjct: 366 FEEMKKDA-APNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCK 424
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+EA +F+EM D K + PD TF +++D R DD VY++
Sbjct: 425 SQKLDEACAMFEEM-----------DYK-VCTPDEITFCSLIDGLGKVGRVDDAYKVYEK 472
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
ML N+ + +I + G+ E
Sbjct: 473 MLDSDCRTNSIVYTSLIKNFFNHGRKE 499
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 121/282 (42%), Gaps = 28/282 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ L +A + E ++ + + R P YN ++
Sbjct: 271 PDEVTYTSMIGVLCKANRLDEAVEMFEHLEK---------------NRRVPCTYAYNTMI 315
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+++ A+ +L++ + +G PS Y ++ + GK + + F +++K P
Sbjct: 316 MGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAP 375
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N Y +L++ L R GK D A + M++ G+ + + LC + K +EA
Sbjct: 376 NLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMF 435
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
+++ P +++ LI G + +A ++ +M + C N + ++K + H
Sbjct: 436 EEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNH 495
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
G E+ K++++M IN+ PD+ NT +D
Sbjct: 496 GRKEDGHKIYKDM------INQNCS------PDLQLLNTYMD 525
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/301 (19%), Positives = 127/301 (42%), Gaps = 29/301 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + + S+ LG+ G + + + V + M D + +VY +++
Sbjct: 445 PDEITFCSLIDGLGKVGRVDDAYKVYEKM---------------LDSDCRTNSIVYTSLI 489
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ E + + + Q P M+ M G+ F +++ + ++
Sbjct: 490 KNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFV 549
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+A +Y +L++ L + G +E M+ +G V Y + C GK +A
Sbjct: 550 PDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQL 609
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
++++ +P VV+Y +I + A +F + K+ N+V + ++ + +
Sbjct: 610 LEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGK 669
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +EA + +E+ + KGL P++YT+N++LDA + ++ + ++
Sbjct: 670 VGRIDEAYLILEELMQ-----------KGLT-PNLYTWNSLLDALVKAEEINEALVCFQS 717
Query: 303 M 303
M
Sbjct: 718 M 718
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 121/288 (42%), Gaps = 52/288 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +Y + L +AG E +++ SM+ + G + D YN V+
Sbjct: 550 PDARSYSILIHGLIKAGFANETYELFYSMK-------EQGCV--------LDTRAYNIVI 594
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + + A+ +L+++K +G +P+ TYG V++ + + + Y F + + I
Sbjct: 595 DGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIE 654
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL-- 181
N + Y L++ + G+ DEA +E++ ++G+ + + L L A + EAL
Sbjct: 655 LNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVC 714
Query: 182 -----------------MQMDKICKV----------------ANKPLVVSYTGLIQACLD 208
+ ++ +CKV KP +SYT +I
Sbjct: 715 FQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAK 774
Query: 209 SGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
+GNI A +F++ K N P+ N M++ +A LF+E
Sbjct: 775 AGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEE 822
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/372 (19%), Positives = 150/372 (40%), Gaps = 45/372 (12%)
Query: 13 IAVTLG--QAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRR 70
I + LG +A ++E +DV+ MR KFK P Y ++ A
Sbjct: 137 IEMVLGCVKANKLREGYDVVQMMR-----KFK----------FRPAFSAYTTLIGAFSAV 181
Query: 71 KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAY 129
+ + QQ+++ G +P+ + ++ G+ + +++ S + + + Y
Sbjct: 182 NHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLY 241
Query: 130 KVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK 189
V +++ + GK D A ++E G+ Y + LC A + +EA+ + + K
Sbjct: 242 NVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEK 301
Query: 190 VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEHGLFEE 248
P +Y +I +G A + + + S P+++ N ++ + G +E
Sbjct: 302 NRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDE 361
Query: 249 AMKLFQEMAEDSNHINREYD----------------------KKGLVIPDIYTFNTMLDA 286
A+K+F+EM +D+ Y+ +K + P++ T N M+D
Sbjct: 362 ALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDR 421
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL----ARAD 342
++ D+ +++ M + + +I + G+V+ +E + R +
Sbjct: 422 LCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTN 481
Query: 343 RITPPALIKERF 354
I +LIK F
Sbjct: 482 SIVYTSLIKNFF 493
>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Vitis vinifera]
Length = 625
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 129/285 (45%), Gaps = 14/285 (4%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + +E D+ VY ++++ R + A + ++ +G PSA TYG ++ + G
Sbjct: 320 EMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAG 379
Query: 107 KYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ ++Q I N + + L++ G DEA+ ME++G+ Y
Sbjct: 380 QMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYN 439
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+A LC + +EA + + + P +S+T LI GN A +F +M+
Sbjct: 440 SIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEK 499
Query: 226 CS-PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
+ PN++T N+++ Y + G +EA KL E+ + +GL IPD+YT +++
Sbjct: 500 GNVPNIITYNVLIDGYSKRGNMKEAHKLKDEL-----------ENRGL-IPDVYTCTSLI 547
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + D ++ M GL N + MI S+ G+ E
Sbjct: 548 HGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSE 592
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 122/282 (43%), Gaps = 27/282 (9%)
Query: 53 LEPDIVVYN--AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
L+ ++ VY+ VL+ +R E ++ ++ +G K + TY +E
Sbjct: 219 LDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGG 278
Query: 111 VYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
V E ++K + N + Y +L++ GK +EA E+M +GI +Y +
Sbjct: 279 VAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIIS 338
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSP 228
C C +G + AL+ D++ P +Y LI +G ++ A + N+M+
Sbjct: 339 CNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDL 398
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKL---------------FQEMAEDSNHINREYDKKGL- 272
N V N ++ Y E G+ +EA++L + +A +NR+ + KGL
Sbjct: 399 NPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLL 458
Query: 273 -------VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
V P+ +F T++D E + + + V++ M G
Sbjct: 459 FSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKG 500
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 84/172 (48%), Gaps = 1/172 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
LE D+ YN++ + + + + A +L + ++G P+ ++ ++++ G +
Sbjct: 431 LESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAK 490
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
FR+++ K +PN + Y VL++ + G EA +++E RG++ L
Sbjct: 491 RVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGE 550
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
C GK + AL D++ + P VV+YT +I G + A ++++MK
Sbjct: 551 CIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMK 602
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+I+ YN +++ +R + A + +L+ +G P T ++ GK ++ +
Sbjct: 503 PNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKL 562
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F ++ Q+ +PN + Y +++ L ++G+++EA ++M+ G+ +Y L L S
Sbjct: 563 FDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHS 622
Query: 174 A 174
A
Sbjct: 623 A 623
>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 119/257 (46%), Gaps = 14/257 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPD++ Y+ ++N + A +L++++++G KP+ Y +++ + +
Sbjct: 42 EPDVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMD 101
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
FF ++ K I P+ Y +++ G+ +EA S + M R ++ + + L LC
Sbjct: 102 FFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLC 161
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
EA + + + + +P V +Y L+ + A +FN M + C+PN+
Sbjct: 162 KKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVR 221
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
+ NI++ + + G +EA L EM+ S + PDI+T++T++
Sbjct: 222 SYNILINGHCKSGRIDEAKGLLAEMSHKS------------LTPDIFTYSTLMRGFCQVG 269
Query: 292 RWDDLELVYKRMLHHGL 308
R + + + K M +GL
Sbjct: 270 RPQEAQELLKEMCSYGL 286
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 2/205 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++ YN ++N + + + A +L ++ + P TY +M G+ E
Sbjct: 218 PNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQEL 277
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++ +PN + Y ++++ L + G DEA ++ M+ I + +Y L +C+
Sbjct: 278 LKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCT 337
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVT 232
GK E A + +P VV+YT +I L G A +F +M N C PN T
Sbjct: 338 FGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCT 397
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMA 257
N++++ +L +G A++L +EM
Sbjct: 398 YNVIIQGFLRNGDTPNAVRLIEEMV 422
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 117/275 (42%), Gaps = 22/275 (8%)
Query: 5 PDTVAYRSIA---VTLGQAGHIKELFDVIDSMRSLPKKKFKTGTL----------ERW-- 49
PD Y SI LG+ LF + +P K T + E W
Sbjct: 113 PDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLV 172
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ LEPD+ YNA+++ R Q + A + + ++G P+ +Y +++
Sbjct: 173 FETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCK 232
Query: 105 CGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ + ++ KS P+ Y L+ + G+ EA +++M G++ +
Sbjct: 233 SGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLIT 292
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQM 222
Y + LC G +EA + + + +P + YT LI+ G ++ A +F N
Sbjct: 293 YSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLF 352
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
P +VT +M+ L+ GL EA +LF+EMA
Sbjct: 353 VKGIQPTVVTYTVMISGLLKGGLSNEACELFREMA 387
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 112/245 (45%), Gaps = 14/245 (5%)
Query: 87 GQKPSATTYGLVMEVMLACGK-YNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEA 145
G +P+ T+ ++ + + K + V F V+ + P+ + Y ++N L + G T A
Sbjct: 5 GLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMA 64
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+ ++ ME +G + Y + LC EA+ ++ K P V +Y+ ++
Sbjct: 65 LQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHG 124
Query: 206 CLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
+ G + A +F QM + PN VT I++ + + EA +F+ M E
Sbjct: 125 FCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTE------ 178
Query: 265 REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASR 324
KGL PD+YT+N ++D + + D+ + ++ M G N + + +I +
Sbjct: 179 -----KGLE-PDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCK 232
Query: 325 AGKVE 329
+G+++
Sbjct: 233 SGRID 237
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/363 (18%), Positives = 136/363 (37%), Gaps = 64/363 (17%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M PD + Y +I L + G+ ++ M + +P++V Y
Sbjct: 39 MGHEPDVITYSTIINGLCKMGNTTMALQLLKKME---------------EKGCKPNVVAY 83
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQ 119
N ++++ + + A ++ ++G P TY ++ G+ N F++ V+
Sbjct: 84 NTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVE 143
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
++ IPN + + +L++ L ++ EA E M +G+ Y L CS + +E
Sbjct: 144 RNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDE 203
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM----------------K 223
A + + + P V SY LI SG I A + +M +
Sbjct: 204 AQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMR 263
Query: 224 NFCS--------------------PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
FC PNL+T +I++ +HG +EA +L + M E
Sbjct: 264 GFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESK--- 320
Query: 264 NREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDAS 323
+ P+I+ + +++ + + ++ + G+ + MI
Sbjct: 321 ---------IEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLL 371
Query: 324 RAG 326
+ G
Sbjct: 372 KGG 374
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 19/172 (11%)
Query: 1 MSSY---PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDI 57
M SY P+ + Y + L + GH+ E F+++ +M+ + ++EP+I
Sbjct: 281 MCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQ---------------ESKIEPNI 325
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
+Y ++ + E A + L +G +P+ TY +++ +L G N E FR+
Sbjct: 326 FIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFRE 385
Query: 118 VQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
+ +PN+ Y V++ R G T AV +E+M +G ++ + L+
Sbjct: 386 MAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFRMLS 437
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 76/158 (48%), Gaps = 13/158 (8%)
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
M + G+ + + L LCS K +A+ D++ K+ ++P V++Y+ +I GN
Sbjct: 1 MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60
Query: 212 IQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270
A + +M + C PN+V N ++ + + L EAM F EM ++
Sbjct: 61 TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEG---------- 110
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+ PD++T++++L R ++ ++K+M+ +
Sbjct: 111 --IPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNV 146
>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
Length = 602
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/331 (22%), Positives = 144/331 (43%), Gaps = 29/331 (8%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P+ Y + TL + G +++ V+D M L R PD+V Y
Sbjct: 161 MPVQPNAYTYNPLIHTLCERGQVRDALSVLDDM------------LCRG---CAPDVVTY 205
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N +L A + + + A ++ ++ +G P+ TY ++M+ M G + E R +
Sbjct: 206 NILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPS 265
Query: 121 SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
P+ + Y ++ L + +A V +M R + A + + LC G ++
Sbjct: 266 HGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQ 325
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVK 238
A+ ++K+ K +V+Y +I + N+ A + ++MK++ C P++VT N ++K
Sbjct: 326 AIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLK 385
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ +A +L M ++ +PD TFNT++ + D
Sbjct: 386 GLCSAAQWVDAEELMDNMTQNG------------CLPDNVTFNTLIGFLCQKGLMVDAIE 433
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
V+K+M G N+ + +I ++A K++
Sbjct: 434 VFKQMPDKGCTPNSITYSTIISGLAKATKLD 464
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 113/265 (42%), Gaps = 17/265 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y + + G + D ++ +R+LP K P V YN VL
Sbjct: 235 PNNVTYNVLMDGMCGEGDVD---DALELLRNLPSHGCK------------PSTVNYNTVL 279
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
++W A ++ ++ ++ P+ T+ +V+ + G + K+ K
Sbjct: 280 KGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCT 339
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + Y ++N L + D A+ + M+ G Y L + LCSA + +A
Sbjct: 340 ANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEEL 399
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
MD + + P V++ LI G + +A +F QM + C+PN +T + ++ +
Sbjct: 400 MDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAK 459
Query: 243 HGLFEEAMKLFQEMAEDSNHINREY 267
++A++LF EM + ++ Y
Sbjct: 460 ATKLDQALELFNEMGHKGFNPDKIY 484
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 95/229 (41%), Gaps = 20/229 (8%)
Query: 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK 186
+AY L + R G+ +A V M + +A Y L LC G+ +AL +D
Sbjct: 136 VAYGALTDGYCRAGRLGDARRVVGGMP---VQPNAYTYNPLIHTLCERGQVRDALSVLDD 192
Query: 187 ICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGL 245
+ P VV+Y L++A + A + + M+ C+PN VT N+++ G
Sbjct: 193 MLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGD 252
Query: 246 FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
++A++L + + P +NT+L + +RW D + + ML
Sbjct: 253 VDDALELLRNLPSHGCK------------PSTVNYNTVLKGLCSAERWGDADELVTEMLR 300
Query: 306 HGLHFNAKRHLRMILDASRAG----KVELLEITWEHLARADRITPPALI 350
N +I R G ++LLE +H A+ +T A+I
Sbjct: 301 ENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAII 349
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 106/243 (43%), Gaps = 24/243 (9%)
Query: 1 MSSY---PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDI 57
M SY PD V Y ++ L A + +++D+M + G L PD
Sbjct: 368 MKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNM-------TQNGCL--------PDN 412
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
V +N ++ ++ A V +Q+ +G P++ TY ++ + K + E F +
Sbjct: 413 VTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNE 472
Query: 118 V-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
+ K + P+ + Y++L L + +EA+ V ++ GI LY + LC GK
Sbjct: 473 MGHKGFNPDKI-YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGK 531
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIM 236
E A+ M + P ++Y LI+ G + A + ++ CS +++ N +
Sbjct: 532 TEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKL---CSRDVLV-NSL 587
Query: 237 VKA 239
+K+
Sbjct: 588 IKS 590
>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 729
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 130/296 (43%), Gaps = 16/296 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDIV YN +++A + E AF ++ + +G P TY V+ + GKY E
Sbjct: 268 PDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEV 327
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F ++ +S + P++ Y+ L+ ++G E DM R +V + +
Sbjct: 328 FAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTR 387
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+G ++ALM + + + P V YT LIQ G I A + N+M + C+ ++VT
Sbjct: 388 SGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVT 447
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEK 291
N ++ + + EA KLF EM E + + PD YT ++D C
Sbjct: 448 YNTILHGLCKRKMLGEADKLFNEMTERA------------LFPDSYTLTILIDGHCKLGN 495
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPP 347
+ +EL +++M + + + ++ + G ++ + W + + + P
Sbjct: 496 LQNAMEL-FQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTP 550
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 135/305 (44%), Gaps = 42/305 (13%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD V Y ++ G ++E F+++++M P K F P + YN V
Sbjct: 267 YPDIVTYNTLISAYSSKGLMEEAFELMNAM---PGKGF------------SPGVYTYNTV 311
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-GLVMEVMLACGKYNLVYE---FFRKVQ 119
+N + ++E A V ++ + G P +TTY L+ME AC K ++V F
Sbjct: 312 INGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLME---ACKKGDVVETEKVFSDMRS 368
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ +P+ + + +++ R G D+A+ ++ G++ +Y L + C G
Sbjct: 369 RDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISV 428
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A+ +++ + VV+Y ++ + A +FN+M + P+ T I++
Sbjct: 429 AMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILID 488
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA-------AEK 291
+ + G + AM+LFQ+M E + D+ T+NT+LD A++
Sbjct: 489 GHCKLGNLQNAMELFQKMKEKRIRL------------DVVTYNTLLDGFGKVGDIDTAKE 536
Query: 292 RWDDL 296
W D+
Sbjct: 537 IWADM 541
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 130/290 (44%), Gaps = 15/290 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D+V YN +L+ +RK A + ++ ++ P + T ++++ G E F
Sbjct: 444 DVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELF 503
Query: 116 RKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+K+++ I + + Y L++ + G D A DM + I+ + Y L LCS
Sbjct: 504 QKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSK 563
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVT 232
G EA D++ KP V+ +I+ SGN + +M + F P+ ++
Sbjct: 564 GHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFV-PDCIS 622
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ ++ +A L ++M E+ +G ++PD++T+N++L + +
Sbjct: 623 YNTLIYGFVREENMSKAFGLVKKMEEE----------QGGLVPDVFTYNSILHGFCRQNQ 672
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILD-ASRAGKVELLEITWEHLARA 341
+ E+V ++M+ G++ + + MI S+ E I E L R
Sbjct: 673 MKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRG 722
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 118/302 (39%), Gaps = 20/302 (6%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
++ N ++NA + + E L Q++++G P TY ++ + G +E
Sbjct: 234 NVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELM 293
Query: 116 RKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ K + P Y ++N L + GK + A +M R G+ + Y L C
Sbjct: 294 NAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKK 353
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
G E + P +V ++ ++ SGN+ A FN +K P+ V
Sbjct: 354 GDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIY 413
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
I+++ Y G+ AM L EM + + D+ T+NT+L K
Sbjct: 414 TILIQGYCRKGMISVAMNLRNEMLQQGCAM------------DVVTYNTILHGLCKRKML 461
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILD-----ASRAGKVELLEITWEHLARADRITPPA 348
+ + ++ M L F L +++D + +EL + E R D +T
Sbjct: 462 GEADKLFNEMTERAL-FPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNT 520
Query: 349 LI 350
L+
Sbjct: 521 LL 522
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/252 (19%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
V++ ++ V+ ++ A L+ +G S ++ ++ G L + ++++
Sbjct: 167 VFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEI 226
Query: 119 QKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+S + N ++VN L ++GK ++ + + ++ +G+ Y L S G
Sbjct: 227 SRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLM 286
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIM 236
EEA M+ + P V +Y +I G + A +F +M ++ SP+ T +
Sbjct: 287 EEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSL 346
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ + G E K+F +M R D V+PD+ F++M+ D
Sbjct: 347 LMEACKKGDVVETEKVFSDM--------RSRD----VVPDLVCFSSMMSLFTRSGNLDKA 394
Query: 297 ELVYKRMLHHGL 308
+ + + GL
Sbjct: 395 LMYFNSVKEAGL 406
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 23/175 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
P ++Y + L GH+ E F V D M S+ K ++G +
Sbjct: 548 PTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESF 607
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQL--KQQGQKPSATTYGLVMEVM 102
LE PD + YN ++ VR + AF +++++ +Q G P TY ++
Sbjct: 608 LEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGF 667
Query: 103 LACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
+ RK +++ P+ Y ++N + EA ++M +RG
Sbjct: 668 CRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRG 722
>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula]
gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula]
Length = 603
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 83/373 (22%), Positives = 160/373 (42%), Gaps = 39/373 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKEL-----------FDVIDSMRSLPKKKFKT---GTLERW- 49
PD+++YR + V + G+I E F V ++ +L +F T W
Sbjct: 203 PDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRALWY 262
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
D LEP+++ + ++ +R + AF +L+++ +G KP+ T+ +++ +
Sbjct: 263 FRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCK 322
Query: 105 CGKYNLVYEFFRKVQKS--YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G + F K+ +S + PN L Y +++ RE K + A + M+ +G+V +
Sbjct: 323 KGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTN 382
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQ 221
Y L C AG E A M+ + P + +Y ++ G +Q A + +
Sbjct: 383 TYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDG 442
Query: 222 MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
+N P+ T NI++ + + +A+ LF +M + + PDI+++
Sbjct: 443 FQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIG------------IQPDIHSYT 490
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL----LEITWEH 337
T++ E R + E+ ++ + G+ K + MI R G + L +H
Sbjct: 491 TLIAVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDH 550
Query: 338 LARADRITPPALI 350
D IT A+I
Sbjct: 551 GCAPDSITYGAII 563
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 132/331 (39%), Gaps = 35/331 (10%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLER 48
M P+ + + + L + G IK+ F++++ M SL K G E+
Sbjct: 269 MGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEK 328
Query: 49 W---------DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM 99
+P+++ Y A+++ R + A +L ++K+QG P+ TY ++
Sbjct: 329 AFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLI 388
Query: 100 EVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ G + Y+ + + + PN Y +VN L + G+ EA +ED + G+
Sbjct: 389 DGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLK 448
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
Y L C +AL +K+ K+ +P + SYT LI ++ +
Sbjct: 449 PDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMF 508
Query: 219 FNQ-MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI 277
F + ++ P T M+ Y G AMK F +++ PD
Sbjct: 509 FEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHG------------CAPDS 556
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
T+ ++ + + D+ +Y M+ GL
Sbjct: 557 ITYGAIISGLCKQSKRDEARSLYDSMIEKGL 587
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 87/232 (37%), Gaps = 55/232 (23%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T Y ++ +AG+ + +D+++ M S P++ YNA++
Sbjct: 379 PNTNTYTTLIDGHCKAGNFERAYDLMNLMSS---------------EGFSPNLCTYNAIV 423
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL--VYEFFRKVQKSY 122
N +R + + A+ +L+ Q G KP TY ++M C + N+ F K+ K
Sbjct: 424 NGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSE--HCKQENIRQALALFNKMLKIG 481
Query: 123 I-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL--ARC--------- 170
I P+ +Y L+ RE + E+ E+ R GI+ + Y + C
Sbjct: 482 IQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAM 541
Query: 171 ------------------------LCSAGKCEEALMQMDKICKVANKPLVVS 198
LC K +EA D + + P V+
Sbjct: 542 KFFHRLSDHGCAPDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLVPCEVT 593
>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
Length = 734
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 107/214 (50%), Gaps = 4/214 (1%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + +EP++VVY+++L + +WE V ++ ++G +P Y +++ + G
Sbjct: 175 EMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVG 234
Query: 107 KYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K + V++ PN + Y VL+N + +EG EA+ ++ M +G+ Y
Sbjct: 235 KAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYN 294
Query: 166 DLARCLCSAGKCEEALMQMDKICKVAN--KPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
L + L + +EA+ ++++ + N KP VV++ +IQ D G ++ A + M+
Sbjct: 295 TLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMME 354
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
C NLVT N+++ L +AM+L EM
Sbjct: 355 ETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEM 388
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 105/216 (48%), Gaps = 4/216 (1%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ D+V Y ++ + + A ++ ++ + G +P+ Y +++ G++ V
Sbjct: 146 VRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVG 205
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F ++ +K P+ + Y L+++L + GK +A ++ M RRG+ + Y L C+
Sbjct: 206 KVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCM 265
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM---KNFCSP 228
C G +EA+ + K+ + P VV+Y LI+ D + A ++ +M KN P
Sbjct: 266 CKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKP 325
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
N+VT N +++ + G +A ++ M E +N
Sbjct: 326 NVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVN 361
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 106/265 (40%), Gaps = 79/265 (29%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D V YN VL A RR + A +L+ + +E AC
Sbjct: 76 DAVSYNTVLTALCRRGHHDRAGALLRAMS--------------LEPHPACR--------- 112
Query: 116 RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
PNA++Y VL+ L + D+AV + M G+ Y L R LC A
Sbjct: 113 --------PNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAA 164
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK------------ 223
+ ++A+ M ++C+ +P VV Y+ L+Q SG ++ +F +M
Sbjct: 165 EVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYT 224
Query: 224 ----NFC--------------------SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
+ C PN+VT N+++ + G +EA+ + ++M+E
Sbjct: 225 GLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSE- 283
Query: 260 SNHINREYDKKGLVIPDIYTFNTML 284
KG V PD+ T+NT++
Sbjct: 284 ----------KG-VAPDVVTYNTLI 297
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 142/331 (42%), Gaps = 36/331 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + +L + G K+ V+D M + G LEP++V YN ++
Sbjct: 218 PDVVMYTGLIDSLCKVGKAKKAHGVMDMM-------VRRG--------LEPNVVTYNVLI 262
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM---LACGKYNLVYEFFRKVQKS 121
N + + A VL+++ ++G P TY +++ + L + + E + +
Sbjct: 263 NCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNI 322
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
PN + + ++ L G+ +A ME G + + Y L L K +A+
Sbjct: 323 VKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAM 382
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAY 240
MD++ + +P +Y+ LI+ + A + + M++ P L ++ A
Sbjct: 383 ELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAM 442
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTML-DACAAEKRWDDLEL 298
E G+ E A LF EM D+N P D+ ++TM+ AC A EL
Sbjct: 443 CEQGMMERARNLFNEM--DNN------------FPLDVVAYSTMIHGACKAGDLKTAKEL 488
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ K ++ GL +A + +I +++G +E
Sbjct: 489 L-KSIVDEGLTPDAVTYSIVINMFAKSGDME 518
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/255 (19%), Positives = 106/255 (41%), Gaps = 20/255 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V + S+ L G +++ F V M +TG + ++V YN ++
Sbjct: 325 PNVVTFNSVIQGLCDIGRMRQAFQVRAMME-------ETGCM--------VNLVTYNLLI 369
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+R + A ++ ++ G +P + TY ++++ + + + ++ I
Sbjct: 370 GGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIE 429
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P Y L+ + +G + A + +M+ + A Y + C AG + A
Sbjct: 430 PELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVA-YSTMIHGACKAGDLKTAKEL 488
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
+ I P V+Y+ +I SG+++ A + QM F P++ + +++ Y
Sbjct: 489 LKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFL-PDVAVFDSLIQGYS 547
Query: 242 EHGLFEEAMKLFQEM 256
G + ++L +EM
Sbjct: 548 TKGEINKVLELIREM 562
>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
Length = 468
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 94/373 (25%), Positives = 156/373 (41%), Gaps = 67/373 (17%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S P V Y + + AG + D+ SM+ + R+EPD YN
Sbjct: 40 SCVPSLVTYNVLINSRCNAGEFGKALDLFQSMKR--------------EKRVEPDRWTYN 85
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGL----------------VMEVMLAC 105
+++ EGA +L +++ + + TY V+E M+A
Sbjct: 86 TLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAA 145
Query: 106 G------KYNLVYEFFRK--------------VQKSYIPNALAYKVLVNTLWREGKTDEA 145
G +N V + F + V+ Y P+ ++Y +L++ L + GK DE+
Sbjct: 146 GCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDES 205
Query: 146 VSAVEDMERR--GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLI 203
+ + +M R G V + + L LC G+ E+AL + + KP +YT LI
Sbjct: 206 LKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLI 265
Query: 204 QACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNH 262
+ + A +F +M C P+ V N ++ Y + G +EA KL++EM+ +
Sbjct: 266 AGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAG- 324
Query: 263 INREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILD 321
+ P I TFNT++D C K ELV + M GL + + +I
Sbjct: 325 ----------LQPTIVTFNTLIDGFCKLGKLGRANELVAE-MGTKGLAADTCTYRILIAG 373
Query: 322 ASRAGKV-ELLEI 333
SRA K+ E LE+
Sbjct: 374 LSRATKLDEALEV 386
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 120/298 (40%), Gaps = 17/298 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+ +N V+ R E A V Q + + G KP +Y +++ + GK + +
Sbjct: 149 PDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKI 208
Query: 115 FRKVQ---KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++ Y+PN + + L++ L R G+ ++A+ M G + Y L L
Sbjct: 209 LSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGL 268
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--PN 229
C A K +A +K+ + P V+Y LI G++ A ++ +M P
Sbjct: 269 CRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPT 328
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+VT N ++ + + G A +L EM KGL D T+ ++ +
Sbjct: 329 IVTFNTLIDGFCKLGKLGRANELVAEMG-----------TKGLA-ADTCTYRILIAGLSR 376
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPP 347
+ D+ VYK+M + + + + G ++ +E ++ + P
Sbjct: 377 ATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNP 434
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/305 (21%), Positives = 131/305 (42%), Gaps = 18/305 (5%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR--K 117
Y+ V+ + + A V + +K + PS TY +++ G++ + F+ K
Sbjct: 13 YDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMK 72
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+K P+ Y L++ L G T+ A + +M + I + Y + + L K
Sbjct: 73 REKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKP 132
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIM 236
EE+ ++++ P V ++ G++Q S N++ A ++ M ++ P+ V+ +I+
Sbjct: 133 EESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHIL 192
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ + G +E++K+ EMA + +P++ TF+T++ +
Sbjct: 193 IHGLAKIGKLDESLKILSEMAM----------RAAGYVPNVITFSTLIHGLCRTGELEKA 242
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPALIKE 352
V+ ML G N + +I RA KV EL E + D + +LI
Sbjct: 243 LEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIA- 301
Query: 353 RFCNR 357
+C R
Sbjct: 302 GYCKR 306
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 111/291 (38%), Gaps = 57/291 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y + L + G + E ++ M P+++ ++ ++
Sbjct: 184 PDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYV-------------PNVITFSTLI 230
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ R + E A V + + G KP+ TY ++ + K E F K+ ++ IP
Sbjct: 231 HGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIP 290
Query: 125 -NALAYKVLV------------NTLWRE------------------------GKTDEAVS 147
+A+AY L+ L+RE GK A
Sbjct: 291 PDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANE 350
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL---MQMDKICKVANKPLVVSYTGLIQ 204
V +M +G+ Y L L A K +EAL QM + + + VS+ G
Sbjct: 351 LVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVG--- 407
Query: 205 ACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
+GNI A +F K+ PN T I+ ++ ++ G E+A KL +
Sbjct: 408 GLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLME 458
>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 575
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/334 (21%), Positives = 145/334 (43%), Gaps = 42/334 (12%)
Query: 19 QAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFW 78
+AG I++ FD++ +R P++V+Y +++ C ++ + E A
Sbjct: 175 EAGEIEKSFDLLVELREFG---------------FSPNVVIYTTLIDGCCKKGEIEKAKD 219
Query: 79 VLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLW 137
+ ++ + G + TY +++ + G +E + K+Q+ PN Y ++N L
Sbjct: 220 LFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLC 279
Query: 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV 197
++G+T +A ++M RG+ + Y L LC K EA MD++ P ++
Sbjct: 280 KDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLI 339
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+Y LI G + A + +K+ SP+LVT N++V + G A K+ +EM
Sbjct: 340 TYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEM 399
Query: 257 ------------------------AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
E + + ++ GLV PD++T++ ++ + +
Sbjct: 400 EERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLV-PDVHTYSVLIHGFCIKGQ 458
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
++ ++K M+ L N + MIL + G
Sbjct: 459 MNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEG 492
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 132/307 (42%), Gaps = 29/307 (9%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ Y + L + G K+ F V D MR ER + +IV YN +
Sbjct: 265 FPNLYTYNCVMNQLCKDGRTKDAFKVFDEMR------------ERG---VSCNIVTYNTL 309
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSY 122
+ R + A V+ Q+K P+ TY +++ + GK R ++ +
Sbjct: 310 IGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGL 369
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ + Y VLV+ R+G T A V++ME RGI S Y L + E A+
Sbjct: 370 SPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQ 429
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ ++ P V +Y+ LI G + A+ +F M + PN V N M+ Y
Sbjct: 430 LRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYC 489
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G A++LF++M E + P++ +++ ++ E++ + E + +
Sbjct: 490 KEGSSYRALRLFRDMEEKE------------LAPNVASYSYLIRVLCKERKLKEAEDLVE 537
Query: 302 RMLHHGL 308
+M+ G+
Sbjct: 538 KMIDSGI 544
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 86/189 (45%), Gaps = 2/189 (1%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P +V YN +++ R+ GA ++++++++G KPS TY ++++
Sbjct: 369 LSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAI 428
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +++ +P+ Y VL++ +G+ +EA + M + + + +Y +
Sbjct: 429 QLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGY 488
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C G AL + + P V SY+ LI+ ++ A + +M + P+
Sbjct: 489 CKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPSD 548
Query: 231 VTCNIMVKA 239
CN++ +A
Sbjct: 549 TICNLISRA 557
>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
Length = 728
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 137/308 (44%), Gaps = 35/308 (11%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S PD Y + + G I E + + M +L +L PD+V YN
Sbjct: 297 SVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENL---------------KLSPDVVTYN 341
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
++N C E F ++++++ +G KP++ TY ++++ + GK + V + RK+++S
Sbjct: 342 TLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEES 401
Query: 122 -YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+P+ + Y L++ + GK DEA +++M R+G+ + R LC K +EA
Sbjct: 402 GCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEA 461
Query: 181 LMQMDKICKVANKPLV---VSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIM 236
D +C + VSY LI A ++++MK P+++T N M
Sbjct: 462 ---HDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSM 518
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ + G +A+ E+ E ++PD T+NT++ E + +
Sbjct: 519 IAGLCQMGKTNQAIDKLDELLESG------------LVPDEITYNTIIHGYCQEGQVEKA 566
Query: 297 ELVYKRML 304
+ +M+
Sbjct: 567 FQFHNKMV 574
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 112/254 (44%), Gaps = 14/254 (5%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
+N +++ ++ A VL +++ G P TY +++ + G+ N + ++
Sbjct: 200 FNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMK 259
Query: 120 -KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
K PN + +LV R G EA + +E M + +V A Y + C G+
Sbjct: 260 NKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIA 319
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMV 237
EA+ +++ + P VV+Y LI C + G+ + + +M+ PN VT N+MV
Sbjct: 320 EAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMV 379
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
K +++ G +E K ++M E +PDI T+NT++ + D+
Sbjct: 380 KWFVKKGKMDEVDKTVRKMEESG------------CLPDIVTYNTLISWHCKVGKMDEAF 427
Query: 298 LVYKRMLHHGLHFN 311
+ M GL +
Sbjct: 428 RLMDEMGRKGLKMD 441
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 116/246 (47%), Gaps = 20/246 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD + YN +L+ ++ + A +L +K +G P+ TT+ + +++ C + + E
Sbjct: 230 PDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNI---LVVGCCRLGWLKEA 286
Query: 115 FRKV----QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ Q S +P+A Y V+++ ++G+ EA+ E+ME + Y L
Sbjct: 287 ANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLING 346
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
G EE ++++ KP V+Y +++ + G + +M ++ C P+
Sbjct: 347 CFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPD 406
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+VT N ++ + + G +EA +L EM +KGL + D+ T NTML A
Sbjct: 407 IVTYNTLISWHCKVGKMDEAFRLMDEMG-----------RKGLKMDDV-TLNTMLRALCR 454
Query: 290 EKRWDD 295
E++ D+
Sbjct: 455 ERKLDE 460
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 128/305 (41%), Gaps = 29/305 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ + G + E F ++D M +K K D V N +L
Sbjct: 405 PDIVTYNTLISWHCKVGKMDEAFRLMDEM---GRKGLKM------------DDVTLNTML 449
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
A R ++ + A +L +++G +YG ++ K + + ++ +K I
Sbjct: 450 RALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEII 509
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y ++ L + GKT++A+ ++++ G+V Y + C G+ E+A
Sbjct: 510 PSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQF 569
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLE 242
+K+ + KP VV+ L+ G ++ A +FN + + V+ N ++ + +
Sbjct: 570 HNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCK 629
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
F EA L +EM E + PD YT+N +L R D E +
Sbjct: 630 EKRFGEAFDLLEEMEEKK------------LGPDCYTYNAILGGLTDAGRMKDAEEFISK 677
Query: 303 MLHHG 307
+ G
Sbjct: 678 IAEKG 682
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 127/305 (41%), Gaps = 40/305 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y +I L + G + E D++ M+ + L P+ +N ++
Sbjct: 230 PDNITYNTILDGLCKKGRLNEARDLLLDMK---------------NKGLFPNRTTFNILV 274
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
C R + A V++ + Q P A TY +++ G+ +++ +
Sbjct: 275 VGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLS 334
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L+N + G ++E +E+ME RG+ ++ Y + + GK +E
Sbjct: 335 PDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKT 394
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ K+ + P +V+Y LI G + A + ++M + + VT N M++A
Sbjct: 395 VRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCR 454
Query: 243 HGLFEEAMKLF----------QEMA-----------EDSNHINREYD--KKGLVIPDIYT 279
+EA L E++ E ++ R +D K+ +IP I T
Sbjct: 455 ERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIIT 514
Query: 280 FNTML 284
+N+M+
Sbjct: 515 YNSMI 519
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 117/277 (42%), Gaps = 26/277 (9%)
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML---ACGKYNLVYEFFRKVQKSY 122
AC R Q A + ++K+ G +P+ T ++ ++ + L F K
Sbjct: 136 ACGRPHQ---AAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIKIG 192
Query: 123 IP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+ N ++ +L++ E + EA+ + M G Y + LC G+ EA
Sbjct: 193 VKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEA- 251
Query: 182 MQMDKICKVANKPLV---VSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMV 237
D + + NK L ++ L+ C G ++ AA + M +N P+ T N+M+
Sbjct: 252 --RDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMI 309
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ + G EAM+L +EM + PD+ T+NT+++ C ++
Sbjct: 310 SGFCKQGRIAEAMRLREEMENLK------------LSPDVVTYNTLINGCFEHGSSEEGF 357
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEIT 334
+ + M G+ N+ + M+ + GK++ ++ T
Sbjct: 358 KLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKT 394
>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
Length = 791
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 143/340 (42%), Gaps = 48/340 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLERWDPR 52
PD V Y S+ L + G E + DSM +L + G L
Sbjct: 299 PDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHAL 358
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L+ PD V+N ++ A ++++ + A V +++Q G P+ TYG V+ ++
Sbjct: 359 LDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCK 418
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + +F + + + PN + Y L+++L K D+A + +M RGI +
Sbjct: 419 SGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIF 478
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ + C G+ E+ D + ++ KP V++Y+ LI +G + A + + M
Sbjct: 479 FNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMF 538
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ P+ VT N ++ Y ++A+ LF+EM V P+I T+N
Sbjct: 539 SVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSG------------VSPNIITYNI 586
Query: 283 MLD--------ACAAE------KRWDDLELVYKRMLHHGL 308
+L A A E K LEL ++ HGL
Sbjct: 587 ILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGL 626
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 146/341 (42%), Gaps = 29/341 (8%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S PD V+Y ++ I F DS K + T E D R+ PD+V Y+
Sbjct: 191 GSAPDVVSYTTV---------INGFFKEGDS-----DKAYST-YHEMLDRRISPDVVTYS 235
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
+++ A + + + A VL + + G P+ TY ++ + + F +K++
Sbjct: 236 SIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSD 295
Query: 122 YI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ P+ + Y L++ L + G++ EA + M +RG+ A Y L + + G E
Sbjct: 296 GVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEM 355
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
+D + + P + LI A + A +F++M+ +PN+VT ++
Sbjct: 356 HALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGI 415
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ G ++AM F++M ++ + P+I + +++ + +WD E +
Sbjct: 416 LCKSGSVDDAMLYFEQMIDEG------------LTPNIIVYTSLIHSLCIFDKWDKAEEL 463
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
ML G+ N +I + G+V E ++ + R
Sbjct: 464 ILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVR 504
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 129/301 (42%), Gaps = 18/301 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQL---KQQGQKPSATTYGLVMEVMLACGKYNLV 111
PD+ +L + + A +L + + G P +Y V+ G +
Sbjct: 156 PDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKA 215
Query: 112 YEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
Y + ++ I P+ + Y ++ L + D+A+ + M + G++ + Y +
Sbjct: 216 YSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHG 275
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
CS+ + +EA+ + K+ +P VV+Y L+ +G A IF+ M K P+
Sbjct: 276 YCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPD 335
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+ T +++ Y G E L M + H PD + FN ++ A A
Sbjct: 336 IATYCTLLQGYATKGALVEMHALLDLMVRNGIH------------PDHHVFNILICAYAK 383
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPAL 349
+++ D+ LV+ +M HGL+ N + +I ++G V+ + +E + + +TP +
Sbjct: 384 QEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMID-EGLTPNII 442
Query: 350 I 350
+
Sbjct: 443 V 443
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/364 (19%), Positives = 142/364 (39%), Gaps = 69/364 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR-------------------SLPKKKFKTGT 45
PD V Y SI L + + + +V+ +M S + K G
Sbjct: 229 PDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGF 288
Query: 46 LERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L++ +EPD+V YN++++ + + A + + ++G +P TY +++
Sbjct: 289 LKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYAT 348
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G ++ + ++ I P+ + +L+ ++ K DEA+ M + G+ +
Sbjct: 349 KGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVT 408
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC----------------L 207
Y + LC +G ++A++ +++ P ++ YT LI + L
Sbjct: 409 YGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEML 468
Query: 208 DSGNIQNAAYIFNQMKNFC--------------------SPNLVTCNIMVKAYLEHGLFE 247
D G N + + + + C PN++T + ++ Y G +
Sbjct: 469 DRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMD 528
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
EA KL M + PD T+NT+++ R DD ++K M+ G
Sbjct: 529 EATKLLSSMFSVG------------MKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSG 576
Query: 308 LHFN 311
+ N
Sbjct: 577 VSPN 580
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 101/243 (41%), Gaps = 11/243 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P+++ Y+ +++ + + A +L + G KP TY ++ + +
Sbjct: 507 VKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDAL 566
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F+++ S + PN + Y +++ L+ +T A + + G + Y + L
Sbjct: 567 ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGL 626
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C +EAL +C + ++ +I A L G A +F N PN
Sbjct: 627 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNY 686
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKGLVIPDIYTFNT 282
T +M + + GL EE +LF M ++ N I RE ++G I T+ +
Sbjct: 687 WTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDSGMLNFIVRELLQRG-EITRAGTYLS 745
Query: 283 MLD 285
M+D
Sbjct: 746 MID 748
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 14/165 (8%)
Query: 145 AVSAVEDMERRG---IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
AVS M R G + + Y L C C AG+ + + + K + +++T
Sbjct: 68 AVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTP 127
Query: 202 LIQA-CLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
L++ C D + +M C P++ +C I++K + +EA++L MA+
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMAD- 186
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
D+ G PD+ ++ T+++ E D Y ML
Sbjct: 187 --------DRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEML 223
>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
Length = 651
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 132/311 (42%), Gaps = 38/311 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPR-LEPDIVVYNAV 63
PD + Y ++ L +AG E G L R PD V ++ +
Sbjct: 76 PDVMTYTALVHALCKAGKFDE----------------AQGMLREMIARGCAPDTVTFSTL 119
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV----- 118
++ + E AF VL+ + Q+G S + +++ + C KYN V E KV
Sbjct: 120 IDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRL--CNKYNSV-ELASKVLGVVI 176
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
K + P L + +++N + D A +E M +G V + + L LC A +
Sbjct: 177 AKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVG 236
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMV 237
EA ++K+ P VV+Y+ +I G + +A +F M + C PN+VT NI++
Sbjct: 237 EAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILI 296
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ EEA +L+ M E PDI T+N+++D + D+
Sbjct: 297 DGLCKAKRIEEARQLYHRMRETG------------CAPDIITYNSLIDGLCKSFQVDEAF 344
Query: 298 LVYKRMLHHGL 308
+++ + G+
Sbjct: 345 QLFQTIPESGV 355
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/299 (20%), Positives = 130/299 (43%), Gaps = 18/299 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ Y ++ + A +L+++K G + +A + +M+ + G+ E
Sbjct: 7 PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEH 66
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
FR + K P+ + Y LV+ L + GK DEA + +M RG + L LC
Sbjct: 67 FRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKF 126
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQ-ACLDSGNIQNAAYIFNQM--KNFCSPNLV 231
G E+A ++ + + ++ +IQ C +++ A+ + + K F +P ++
Sbjct: 127 GSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGF-TPTVL 185
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
N+++ + + + A KL + M E KG V P+++TF ++
Sbjct: 186 MFNLVINGFCKAKDLDSAYKLLEVMIE-----------KGCV-PNVFTFTILITGLCKAN 233
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
R + + + ++M+ G N + +I + G+V+ ++ + R R PP ++
Sbjct: 234 RVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMER--RNCPPNVV 290
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 104/233 (44%), Gaps = 15/233 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P ++++N V+N + K + A+ +L+ + ++G P+ T+ +++ + + +
Sbjct: 182 PTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQL 241
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K V PN + Y ++N L ++G+ D+A + MERR + + L LC
Sbjct: 242 LEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCK 301
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLV 231
A + EEA ++ + P +++Y LI S + A +F + + N V
Sbjct: 302 AKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAV 361
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
T + + Y G +A ++F + + KG PD+ T+ +++
Sbjct: 362 TYSTLFHGYAALGRMADACRIFSMLVD-----------KGFS-PDLATYTSLI 402
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 90/209 (43%), Gaps = 5/209 (2%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN----L 110
P + +AVL E A + + +G A Y LV+E M K+N +
Sbjct: 428 PRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAV 487
Query: 111 VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ + K + + P++ A LV +L + G+TD+A + M RG + + Y L
Sbjct: 488 LEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSG 547
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPN 229
L + +EA + + P + + +I + + +A + +M C P+
Sbjct: 548 LSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPD 607
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
+ TCN ++ Y + G + A KL +EM E
Sbjct: 608 IETCNTLIGGYCKSGRADLARKLLEEMTE 636
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 98/239 (41%), Gaps = 30/239 (12%)
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+PN Y +L+ G D A+ +E+M+ G G+A ++ L + LC AG+ EAL
Sbjct: 6 MPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALE 65
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ K P V++YT L+ A +G A + +M C+P+ VT + ++
Sbjct: 66 HFRAMAKDC-APDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLC 124
Query: 242 EHGLFEEAMK-------------------LFQEMAEDSNHINREYDKKGLVI-----PDI 277
+ G E+A + + Q + N + G+VI P +
Sbjct: 125 KFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTV 184
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLE 332
FN +++ K D + + M+ G N +I +A +V +LLE
Sbjct: 185 LMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLE 243
>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic [Vitis vinifera]
Length = 867
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/351 (23%), Positives = 152/351 (43%), Gaps = 36/351 (10%)
Query: 3 SYPDTV-AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKK------------FKTGT---- 45
Y +TV A+ ++ G++G+ E V ++M+S K K G
Sbjct: 215 GYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNR 274
Query: 46 -LERWDPRL----EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
E +D L +PD + +N++L C R WE A + ++ +G + TY +++
Sbjct: 275 AAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLD 334
Query: 101 VMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+ G+ +L ++ ++ + +I PN + Y +++ + G+ DEA++ +M+ I
Sbjct: 335 AVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGL 394
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219
Y L G+ EEAL ++ K V+Y L+ G + +F
Sbjct: 395 DRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVF 454
Query: 220 NQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
+MK PNL+T + ++ Y + GL++EAM++F RE+ K GL D+
Sbjct: 455 EEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVF-----------REFKKAGLK-ADVV 502
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++ ++DA + M G+ N + +I R+G E
Sbjct: 503 LYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGSAE 553
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 142/319 (44%), Gaps = 36/319 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ +AG + E ++ + M KF + L+R V YN +L
Sbjct: 359 PNVVTYSTVIDGYAKAGRLDEALNLFNEM------KFASIGLDR---------VSYNTLL 403
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + ++E A V ++++ G K A TY ++ GKY V F +++ I
Sbjct: 404 SIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIF 463
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN L Y L++ + G EA+ + ++ G+ LY L LC G E A+
Sbjct: 464 PNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSF 523
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQ---NAAYIFNQMKNFCSPNLVTCNIMVKAY 240
+D++ K +P VV+Y +I A SG+ + + Y N K S +L ++
Sbjct: 524 LDEMTKEGIRPNVVTYNSIIDAFGRSGSAECVIDPPYETNVSK-MSSSSLKVVEDATESE 582
Query: 241 LEHGLFEEAMKLFQEM-AEDSNHINREYDKKGLVI---------------PDIYTFNTML 284
+ + +K+F ++ AE + H +E + ++ P++ TF+ +L
Sbjct: 583 VGDKEDNQIIKIFGQLAAEKTCHAKKENRGRQEILCILAVFHKMHELDIKPNVVTFSAIL 642
Query: 285 DACAAEKRWDDLELVYKRM 303
+AC+ ++D ++ + +
Sbjct: 643 NACSRCNSFEDASMLLEEL 661
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 16/221 (7%)
Query: 112 YEF-FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+EF R+ Q+ LA +++ L R G+ + A + E G + + L
Sbjct: 171 FEFAVRREQRRNEQGKLA-SAMISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISA 229
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG-NIQNAAYIFNQM-KNFCSP 228
+G C+EA+ + + KP +V+Y +I AC G + AA IF++M +N P
Sbjct: 230 YGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQP 289
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
+ +T N ++ GL+E A LF EM + R ++ DI+T+NT+LDA
Sbjct: 290 DRITFNSLLAVCGRGGLWEAARNLFSEM------LYRGIEQ------DIFTYNTLLDAVC 337
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ D + M + N + +I ++AG+++
Sbjct: 338 KGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLD 378
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 87/208 (41%), Gaps = 20/208 (9%)
Query: 129 YKVLVNTLWREGKTDEAVS----AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
Y L+ L G+ +A+ AV +RR G L + L G+ E A
Sbjct: 151 YTFLLRELGNRGEWAKAIRCFEFAVRREQRRNEQGK--LASAMISILGRLGQVELAKNVF 208
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
+ V +++ LI A SG A +F MK+ PNLVT N ++ A +
Sbjct: 209 ETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKG 268
Query: 244 GL-FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G+ F A ++F EM + V PD TFN++L C W+ ++
Sbjct: 269 GVDFNRAAEIFDEMLRNG------------VQPDRITFNSLLAVCGRGGLWEAARNLFSE 316
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVEL 330
ML+ G+ + + ++ + G+++L
Sbjct: 317 MLYRGIEQDIFTYNTLLDAVCKGGQMDL 344
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 11/110 (10%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P++V ++A+LNAC R +E A +L++L+ + +GL+M G + V+
Sbjct: 631 IKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLM------GYGDNVW 684
Query: 113 ----EFFRKVQKSYIPNALA-YKVLVNTLWREGKTDEAVSAVEDMERRGI 157
F +V++ A A Y L + LW G+ A V + +RR +
Sbjct: 685 VQAQSLFDEVKQMDSSTASAFYNALTDMLWHFGQRRGAQLVVLEGKRRHV 734
>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At2g02150-like [Cucumis
sativus]
Length = 822
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 128/277 (46%), Gaps = 14/277 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD+V YN++++ + E + ++K G P TY ++ K +
Sbjct: 261 LSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAF 320
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E+F +++ + + PN + Y L++ +EG A+ + DM R G++ + Y L
Sbjct: 321 EYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDAN 380
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C AG EA ++ + + K +V+YT L+ +G + A +F M K+ SPN
Sbjct: 381 CKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQ 440
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+V Y++ E+AMK+ ++M E + + PD+ + +++ ++
Sbjct: 441 QVYTALVHGYIKAERMEDAMKILKQMTECN------------IKPDLILYGSIIWGHCSQ 488
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
++ ++ +L+ + M G+ N +I +AGK
Sbjct: 489 RKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGK 525
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 118/255 (46%), Gaps = 17/255 (6%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+ V Y ++ L +AG + E +V SM K G + P+ VY A+++
Sbjct: 404 NIVTYTALLDGLCKAGRMIEAEEVFRSM-------LKDG--------ISPNQQVYTALVH 448
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
++ ++ E A +L+Q+ + KP YG ++ + K +++ I
Sbjct: 449 GYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISA 508
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N + +++ ++ GK+ +A++ ++M+ G+ + Y L LC AG E A+
Sbjct: 509 NPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYF 568
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEH 243
++ + +P V YT LI + I++A +F++M+ +P++ ++ L+H
Sbjct: 569 CRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKH 628
Query: 244 GLFEEAMKLFQEMAE 258
G +EA+ L M E
Sbjct: 629 GNLQEALVLISRMTE 643
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 19/255 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPR-LEPDIVVYNAV 63
PD + Y SI GH S R L + K LE R + + V+ +
Sbjct: 473 PDLILYGSII-----WGHC--------SQRKLEETKL---ILEEMKSRGISANPVISTTI 516
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSY 122
++A + + A Q+++ G + + TY ++++ + G L ++F R +
Sbjct: 517 IDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGL 576
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN Y L++ L + A ++M+ RG+ + L G +EAL+
Sbjct: 577 QPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALV 636
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ ++ ++A + + YT L+ G + A FN+M + P V C +++ Y
Sbjct: 637 LISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYY 696
Query: 242 EHGLFEEAMKLFQEM 256
+ G +EA++L EM
Sbjct: 697 KRGQLDEAIELKNEM 711
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 13/207 (6%)
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P A + L++ L + G DM GI S Y + LC G E +
Sbjct: 192 LPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRR 251
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYL 241
++ ++ P VV+Y LI G+++ A +FN+MK+ C P+++T N ++ Y
Sbjct: 252 LFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYC 311
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ A + F EM + + P++ T++T++DA E +
Sbjct: 312 KFEKMPRAFEYFSEMKNNG------------LKPNVVTYSTLIDAFCKEGMMQGAIKLLX 359
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKV 328
M GL N + +I +AG +
Sbjct: 360 DMRRTGLLPNEFTYTSLIDANCKAGNL 386
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/103 (19%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PDI + A+++ ++ + A ++ ++ + + Y ++ CG+ +
Sbjct: 611 MTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQAR 670
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
+FF + ++K +P + L+ ++ G+ DEA+ +MER
Sbjct: 671 KFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMER 713
>gi|357159753|ref|XP_003578548.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At4g17915-like [Brachypodium distachyon]
Length = 460
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 143/323 (44%), Gaps = 26/323 (8%)
Query: 42 KTGTLERWDPRL--------EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSAT 93
++G+LER + L PD+V YN +L A R + F VL+++++ G P+A
Sbjct: 22 RSGSLERAESVLIDAILLGMPPDVVTYNTLLAAHCRAAGLDAGFAVLRRMREAGVWPNAV 81
Query: 94 TYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDM 152
TY ++ G + F ++ ++ I P+A +Y VL++ L+R G ++A DM
Sbjct: 82 TYNSLIVAASRVGLTMRALDLFDEMLRAGIAPDAWSYNVLMHCLFRSGHPEDAYRVFADM 141
Query: 153 ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI 212
+G+ Y L L AG A + +V +V+Y +I SG +
Sbjct: 142 AEKGVTPCTTTYNTLLDGLFKAGHATNAYRMFRYLQRVGLPVGIVTYNTMINGLCRSGKV 201
Query: 213 QNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKG 271
A I ++ + +PN VT ++K +G F++ ++ F + E +
Sbjct: 202 GYARMILRELGRTEHTPNAVTYTTVMKCCFRYGRFDQGLETFLSLLEGGH---------- 251
Query: 272 LVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV--- 328
IPD++ + T++ A + R ++ + M+ G + + +I + GK+
Sbjct: 252 --IPDVFPYCTVISALVKKGRVEEANAYSELMIQSGSRLDTACYNTLIHLRCQEGKLDDA 309
Query: 329 -ELLEITWEHLARADRITPPALI 350
ELL + E +D T L+
Sbjct: 310 FELLSMMEEGGLESDEYTFSILV 332
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 125/304 (41%), Gaps = 36/304 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ V Y S+ V + G D+ D M + G + PD YN +
Sbjct: 77 WPNAVTYNSLIVAASRVGLTMRALDLFDEM-------LRAG--------IAPDAWSYNVL 121
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
++ R E A+ V + ++G P TTY +++ + G Y FR +Q+ +
Sbjct: 122 MHCLFRSGHPEDAYRVFADMAEKGVTPCTTTYNTLLDGLFKAGHATNAYRMFRYLQRVGL 181
Query: 124 P-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P + Y ++N L R GK A + ++ R +A Y + +C G+ ++ L
Sbjct: 182 PVGIVTYNTMINGLCRSGKVGYARMILRELGRTEHTPNAVTYTTVMKCCFRYGRFDQGLE 241
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMKNFCSPNLVTCNIMVKAYL 241
+ + + P V Y +I A + G ++ A AY +++ + N ++
Sbjct: 242 TFLSLLEGGHIPDVFPYCTVISALVKKGRVEEANAYSELMIQSGSRLDTACYNTLIHLRC 301
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC-------AAEKRWD 294
+ G ++A +L M E G + D YTF+ +++ AAEK+
Sbjct: 302 QEGKLDDAFELLSMMEE------------GGLESDEYTFSILVNGLCKLGHIEAAEKQLC 349
Query: 295 DLEL 298
+E+
Sbjct: 350 YMEM 353
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 89/213 (41%), Gaps = 26/213 (12%)
Query: 15 VTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEP--------DIVVYNAVLNA 66
++L + GHI ++F + +L KK G +E + E D YN +++
Sbjct: 244 LSLLEGGHIPDVFPYCTVISALVKK----GRVEEANAYSELMIQSGSRLDTACYNTLIHL 299
Query: 67 CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG-----KYNLVYEFFRKVQKS 121
+ + + AF +L +++ G + T+ +++ + G + L Y R ++
Sbjct: 300 RCQEGKLDDAFELLSMMEEGGLESDEYTFSILVNGLCKLGHIEAAEKQLCYMEMRDMES- 358
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
N +AY LV+ L + + D A+ + DM+ + Y L LC G+ A
Sbjct: 359 ---NVVAYNCLVDALCKSDQVDAAIRLLHDMKLK----DDFTYTSLVHGLCRVGRYHMA- 410
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQN 214
+ +IC ++ S + A L S +N
Sbjct: 411 SKFLRICLREGNNVLASAKRAVIAGLRSAGFKN 443
>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 744
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 141/327 (43%), Gaps = 29/327 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L + G+ ++ SM +PD+V+Y +++
Sbjct: 159 PNVVTYGTLINGLCKVGNTSAAIRLLRSMEQ---------------GNCQPDVVIYTSII 203
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
++ + +Q AF + Q+ QG P TY ++ + ++ V ++ S I
Sbjct: 204 DSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKIL 263
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + +V+ L +EGK EA V+ M +RG+ Y L C + +EA+
Sbjct: 264 PDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKV 323
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
D + + P V+SYT LI I A Y+F +M + P+ T N ++
Sbjct: 324 FDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCH 383
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G ++A+ LF EM +PD+ T++ +LD+ ++ + K
Sbjct: 384 VGRLQDAIALFHEMVARGQ------------MPDLVTYSILLDSLCKNCHLEEAMALLKA 431
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
+ L+ + + + +I RAG++E
Sbjct: 432 IEASNLNPDIQVYNIIIDGMCRAGELE 458
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 131/307 (42%), Gaps = 29/307 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y SI +L + + E F++ M + PDI Y +++
Sbjct: 194 PDVVIYTSIIDSLCKDRQVTEAFNLFSQMVG---------------QGISPDIFTYTSLV 238
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYI 123
+A +W+ +L Q+ P + V++ + GK +E +Q+
Sbjct: 239 HALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVE 298
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ + + DEAV + M R+G Y L C K ++A+
Sbjct: 299 PDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYL 358
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+++C+ P +Y L+ G +Q+A +F++M P+LVT +I++ + +
Sbjct: 359 FEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCK 418
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ EEAM L + A +++++N PDI +N ++D + ++
Sbjct: 419 NCHLEEAMALLK--AIEASNLN----------PDIQVYNIIIDGMCRAGELEAARDLFSN 466
Query: 303 MLHHGLH 309
+ GLH
Sbjct: 467 LSSKGLH 473
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 123/292 (42%), Gaps = 14/292 (4%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++ N ++N+ + AF VL ++ + G +P TT+ ++ + GK
Sbjct: 89 PNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHL 148
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F K + + + PN + Y L+N L + G T A+ + ME+ +Y + LC
Sbjct: 149 FDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCK 208
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
+ EA ++ P + +YT L+ A + ++ + NQM N P++V
Sbjct: 209 DRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVI 268
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+ +V A + G EA ++ M + V PD+ T+ T++D +
Sbjct: 269 FSTVVDALCKEGKVTEAHEIVDMMIQRG------------VEPDVVTYTTLMDGHCLQSE 316
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI 344
D+ V+ M+ G + + +I + K++ +E + R + I
Sbjct: 317 MDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWI 368
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 123/281 (43%), Gaps = 29/281 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + ++ L + G + E +++D M ++R +EPD+V Y ++
Sbjct: 264 PDVVIFSTVVDALCKEGKVTEAHEIVDMM------------IQR---GVEPDVVTYTTLM 308
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN-LVYEFFRKVQKSYI 123
+ + + + A V + ++G P +Y ++ K + +Y F +K +I
Sbjct: 309 DGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWI 368
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y L++ L G+ +A++ +M RG + Y L LC EEA+
Sbjct: 369 PDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMAL 428
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+ I P + Y +I +G ++ A +F+ + + P++ T NIM+ +
Sbjct: 429 LKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCK 488
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
GL EA KLF EM D N + PD T+NT+
Sbjct: 489 RGLLNEANKLFMEM--DGNDCS----------PDGCTYNTI 517
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 127/307 (41%), Gaps = 33/307 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + ++ L G I E + D M D +P++V Y ++
Sbjct: 124 PDPTTFTTLIRGLCVEGKIGEALHLFDKM---------------IDEGFQPNVVTYGTLI 168
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + A +L+ ++Q +P Y +++ + + + F + V +
Sbjct: 169 NGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGIS 228
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y LV+ L + + + M I+ ++ + LC GK EA
Sbjct: 229 PDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEI 288
Query: 184 MDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAY 240
+D + + +P VV+YT L+ CL S + A +F+ M K F +P++++ ++ Y
Sbjct: 289 VDMMIQRGVEPDVVTYTTLMDGHCLQS-EMDEAVKVFDMMVRKGF-APDVISYTTLINGY 346
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ ++AM LF+EM +E+ IPD T+NT++ R D ++
Sbjct: 347 CKIHKIDKAMYLFEEMCR------KEW------IPDTKTYNTLMHGLCHVGRLQDAIALF 394
Query: 301 KRMLHHG 307
M+ G
Sbjct: 395 HEMVARG 401
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 16/172 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + +L + H++E ++ ++ + L PDI VYN ++
Sbjct: 404 PDLVTYSILLDSLCKNCHLEEAMALLKAIEA---------------SNLNPDIQVYNIII 448
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ R + E A + L +G PS TY +++ + G N + F ++ +
Sbjct: 449 DGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCS 508
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
P+ Y + + +T A+ +E+M RG + L L G
Sbjct: 509 PDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVSTTTLLVEMLSDDG 560
>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
Length = 638
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 145/305 (47%), Gaps = 35/305 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKE---LFDVIDSMRSLP-------------KKKFKTGTLER 48
PDTV ++ LG+AG + + LF + ++R +P + K + +
Sbjct: 333 PDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPS 392
Query: 49 WDPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
W R++ P Y+ +++ + + E A +L+++ ++G P Y +++ +
Sbjct: 393 WFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALG 452
Query: 104 ACGKYNLVYEFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+Y+L E F++++++ +A Y V++ L + G+ D+A++ ++M + G
Sbjct: 453 KAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVY 512
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y L L G +EAL M ++ + P + SY ++ +G A + + M
Sbjct: 513 AYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNM 572
Query: 223 K-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
K + P++V+ N ++ A G+FEEA KL +EM N + EY D+ T++
Sbjct: 573 KQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEM----NTLGFEY--------DLITYS 620
Query: 282 TMLDA 286
++L+A
Sbjct: 621 SILEA 625
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/331 (21%), Positives = 150/331 (45%), Gaps = 35/331 (10%)
Query: 5 PDTVAYRSIAVTL---GQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
P AY S+ + L GQ G + EL++ + + + PD + Y+
Sbjct: 192 PTAQAYNSMIIMLMHEGQYGKVHELYNEMST-----------------EGHCFPDTMTYS 234
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
A+++A + + + A +L ++K+ G +P+ Y +++ + + F +++
Sbjct: 235 ALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQ 294
Query: 122 YI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
Y P+ Y L+ L + G+ DEA +M+R G + ++ L AG+ ++A
Sbjct: 295 YCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDA 354
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDS-GNIQNAAYIFNQMK-NFCSPNLVTCNIMVK 238
+ ++ + P VV+Y +I+A +S F +MK + SP+ T +I++
Sbjct: 355 MKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILID 414
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ + E+AM L +EM D+KG P + +++DA KR+D
Sbjct: 415 GFCKTNRMEKAMMLLEEM-----------DEKGFP-PCPAAYCSLIDALGKAKRYDLACE 462
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+++ + + +A+ + MI +AG+++
Sbjct: 463 LFQELKENCGSSSARVYAVMIKHLGKAGRLD 493
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 118/262 (45%), Gaps = 20/262 (7%)
Query: 55 PDIVVYNAVLNACVRR----KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
P VV L+ VR K A + Q+K + +P+A Y ++ +++ G+Y
Sbjct: 153 PICVVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGK 212
Query: 111 VYEFFRKV--QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
V+E + ++ + P+ + Y L++ + G+ D A + +M+ G+ + +Y L
Sbjct: 213 VHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLI 272
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
AL +++ +P V +YT LI+ +G I A + F +M + C
Sbjct: 273 TLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCR 332
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P+ V N M+ + G ++AMKLFQEM IP + T+NT++ A
Sbjct: 333 PDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLR------------CIPSVVTYNTIIKAL 380
Query: 288 AAEK-RWDDLELVYKRMLHHGL 308
K R ++ ++RM G+
Sbjct: 381 FESKSRASEVPSWFERMKESGI 402
>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 131/285 (45%), Gaps = 30/285 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y S+ L G + E + D M + L+P+I+ +NA+L
Sbjct: 269 PNVVTYNSLINGLCNNGKVNEATALRDQM---------------VNSCLKPNIITHNALL 313
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL--VYEFFR-KVQKS 121
N + K + A + + +QG P+ TTY ++++ C N+ + +R + K
Sbjct: 314 NGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAY--CKDENMEDAFALYRIMLGKG 371
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
P+ Y L+ L R+G + A + V +M+ + + Y L LC+ G+ ++AL
Sbjct: 372 VCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKAL 431
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAY 240
+D++C+ KP ++Y +I GN++ A + +QM+ N+ T N+++K +
Sbjct: 432 RLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGF 491
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINR--------EYDKKGLVIPDI 277
+ E+A L EM E NR E +KG V PDI
Sbjct: 492 CKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKGFV-PDI 535
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 151/331 (45%), Gaps = 59/331 (17%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEFFRKVQKSYIPNALAYKVLVN 134
F ++ G K S T+ +M ++ G+ ++ + + +++ P +++ +++N
Sbjct: 112 GFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVIN 171
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC-----EEALMQ------ 183
L + GK ++A +EDM+ RG+ + Y L C GK +A+++
Sbjct: 172 GLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADG 231
Query: 184 -----------MDKICKVAN----------------KPLVVSYTGLIQACLDSGNIQNAA 216
+D CK N KP VV+Y LI ++G + A
Sbjct: 232 ICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEAT 291
Query: 217 YIFNQMKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
+ +QM N C PN++T N ++ + ++ + ++A +LF +M K+G + P
Sbjct: 292 ALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMP-----------KQG-ITP 339
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE-----L 330
++ T+N ++DA ++ +D +Y+ ML G+ + + +I R G +E +
Sbjct: 340 NVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLV 399
Query: 331 LEITWEHLARADRITPPALIKERFCNRLENK 361
E+ +HL +AD IT LI + CN+ E K
Sbjct: 400 SEMDTKHL-KADLITYNILI-DSLCNKGEMK 428
>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 777
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 128/292 (43%), Gaps = 29/292 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D+++Y ++ + + G ++E F K K + R ++PD+ YN +L+
Sbjct: 476 DSISYNTLILACCKEGKVEEGF------------KLKEEMVRRG---IQPDMYTYNMLLH 520
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP- 124
+ E A + + K+ G P A TYG++++ + + F+++ I
Sbjct: 521 GLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQ 580
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
NA+ Y L+ G EA +DM RGI ++A Y L L + G + A +
Sbjct: 581 NAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLL 640
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEH 243
D++ K P VV YT LI G + I +M N PN +T IM+ + +
Sbjct: 641 DEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKL 700
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
G + A KL EMA+ KG+V PD T+N + + E + ++
Sbjct: 701 GNMKAAAKLLNEMAQ-----------KGIV-PDAVTYNALTNGFCKEGKMEE 740
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 128/304 (42%), Gaps = 18/304 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P + N +L++ V+ + + ++ V + G P + ++ G+ +
Sbjct: 158 LFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAI 217
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E FRK++K + PN + Y +++ L + G+ DEA E ME+ + S Y L L
Sbjct: 218 ELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGL 277
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
+ +EA + ++ P V Y LI GNI A I + M N SPN
Sbjct: 278 VKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNS 337
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VTCN +++ Y + E A L +EM IN+ TF +++ +
Sbjct: 338 VTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQG------------TFTSVIHRLCLK 385
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLAR---ADRITP 346
R+D L ML N ++ + GK E +E+ + L + A+ +T
Sbjct: 386 CRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTS 445
Query: 347 PALI 350
ALI
Sbjct: 446 NALI 449
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 120/277 (43%), Gaps = 26/277 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
P+ V Y ++ + G+I + D M SL + K+ +E +
Sbjct: 300 PNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHL 359
Query: 53 LEPDIV--------VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
LE + + +V++ + +++ A + ++ + KP+ L++ +
Sbjct: 360 LEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQ 419
Query: 105 CGKYNLVYEF-FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK + E +R ++K + N + L++ L G +EA +++M RG+V +
Sbjct: 420 NGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSIS 479
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L C GK EE +++ + +P + +Y L+ + G I+ A ++++ K
Sbjct: 480 YNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECK 539
Query: 224 ---NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
NF P+ T IM+ Y + EE KLFQEM
Sbjct: 540 KNGNF--PDAYTYGIMIDGYCKANRVEEGEKLFQEMV 574
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 78/364 (21%), Positives = 158/364 (43%), Gaps = 38/364 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y +I L + G + E F + M R++P +V Y ++
Sbjct: 230 PNVVTYNNIIHGLCKNGRLDEAFQFKEKMEK---------------ERVKPSLVTYGVLI 274
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N V+ ++++ A +L+++ +G P+ Y +++ G + + + + I
Sbjct: 275 NGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGIS 334
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN++ L+ + + + A +E+M G V + + + LC + + AL+
Sbjct: 335 PNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLF 394
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
+ ++ KP T L+ +G A ++ ++ K F + N VT N ++
Sbjct: 395 IMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGF-AANTVTSNALIHGLC 453
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
E G EEA KL +EM E +GLV+ I ++NT++ AC E + ++ + +
Sbjct: 454 EAGSKEEAAKLLKEMLE-----------RGLVLDSI-SYNTLILACCKEGKVEEGFKLKE 501
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPA----LIKERFC-- 355
M+ G+ + + ++ GK+E W H + + P A ++ + +C
Sbjct: 502 EMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLW-HECKKNGNFPDAYTYGIMIDGYCKA 560
Query: 356 NRLE 359
NR+E
Sbjct: 561 NRVE 564
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 91/205 (44%), Gaps = 24/205 (11%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+ V Y ++ + G+++E F + D MRS R P+ Y+++++
Sbjct: 581 NAVVYGTLIRAYCENGNMREAFRLRDDMRS------------RGIPQTS---ATYSSLIH 625
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ A +L +++++G P+ Y ++ G+ + V +++ + + P
Sbjct: 626 GLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHP 685
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N + Y +++N + G A + +M ++GIV A Y L C GK EEAL
Sbjct: 686 NKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEAL--- 742
Query: 185 DKICKVANKPLV----VSYTGLIQA 205
K+C + + + ++YT LI
Sbjct: 743 -KVCDLMSTGGISLDDITYTTLIDG 766
>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Cucumis sativus]
Length = 786
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 127/277 (45%), Gaps = 14/277 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD+V YN++++ + E + ++K G P TY ++ K +
Sbjct: 320 LSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAF 379
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E+F +++ + + PN + Y L++ +EG A+ DM R G++ + Y L
Sbjct: 380 EYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDAN 439
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C AG EA ++ + + K +V+YT L+ +G + A +F M K+ SPN
Sbjct: 440 CKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQ 499
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+V Y++ E+AMK+ ++M E + + PD+ + +++ ++
Sbjct: 500 QVYTALVHGYIKAERMEDAMKILKQMTECN------------IKPDLILYGSIIWGHCSQ 547
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
++ ++ +L+ + M G+ N +I +AGK
Sbjct: 548 RKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGK 584
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 118/255 (46%), Gaps = 17/255 (6%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+ V Y ++ L +AG + E +V SM K G + P+ VY A+++
Sbjct: 463 NIVTYTALLDGLCKAGRMIEAEEVFRSM-------LKDG--------ISPNQQVYTALVH 507
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
++ ++ E A +L+Q+ + KP YG ++ + K +++ I
Sbjct: 508 GYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISA 567
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N + +++ ++ GK+ +A++ ++M+ G+ + Y L LC AG E A+
Sbjct: 568 NPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYF 627
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEH 243
++ + +P V YT LI + I++A +F++M+ +P++ ++ L+H
Sbjct: 628 CRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKH 687
Query: 244 GLFEEAMKLFQEMAE 258
G +EA+ L M E
Sbjct: 688 GNLQEALVLISRMTE 702
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 110/255 (43%), Gaps = 19/255 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPR-LEPDIVVYNAV 63
PD + Y SI GH S R L + K LE R + + V+ +
Sbjct: 532 PDLILYGSII-----WGHC--------SQRKLEETKL---ILEEMKSRGISANPVISTTI 575
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSY 122
++A + + A Q+++ G + + TY ++++ + G L ++F R +
Sbjct: 576 IDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGL 635
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN Y L++ L + + A ++M+ RG+ + L G +EAL+
Sbjct: 636 QPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALV 695
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ ++ ++A + + YT L+ G + A FN+M + P V C +++ Y
Sbjct: 696 LISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYY 755
Query: 242 EHGLFEEAMKLFQEM 256
+ G +EA++L EM
Sbjct: 756 KRGQLDEAIELKNEM 770
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 13/207 (6%)
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P A + L++ L + G DM GI S Y + LC G E +
Sbjct: 251 LPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRR 310
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYL 241
++ ++ P VV+Y LI G+++ A +FN+MK+ C P+++T N ++ Y
Sbjct: 311 LFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYC 370
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ A + F EM K + P++ T++T++DA E ++
Sbjct: 371 KFEKMPRAFEYFSEM------------KNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFV 418
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKV 328
M GL N + +I +AG +
Sbjct: 419 DMRRTGLLPNEFTYTSLIDANCKAGNL 445
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PDI + A+++ ++ + A ++ ++ + + Y ++ CG+ +
Sbjct: 670 MTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQAR 729
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+FF + ++K +P + L+ ++ G+ DEA+ +MER G++ +A
Sbjct: 730 KFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMGLITESA 780
>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
Length = 1031
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 148/371 (39%), Gaps = 66/371 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
PD V Y +A L + G I E F+++ M +L K E+
Sbjct: 364 PDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYEL 423
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
LE PD+V Y +++ + + + A +++ + ++G PS TY +ME +
Sbjct: 424 LESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCR 483
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWR------------------------- 138
G+ + + F++ V K +ALAY LVN +
Sbjct: 484 TGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNA 543
Query: 139 -------EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA 191
EG+ DE + EDM RG V + Y + LC GK +EA ++ +
Sbjct: 544 LMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAG 603
Query: 192 NKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAM 250
P VVSY +I + + A + +QM + P+ VT N ++ + + F++A+
Sbjct: 604 CVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAV 663
Query: 251 KLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHF 310
+ + M K V PD T+NT++ + R D + ML +G
Sbjct: 664 GILKNMI------------KAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVV 711
Query: 311 NAKRHLRMILD 321
+A I+D
Sbjct: 712 SACTTYNTIID 722
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 142/327 (43%), Gaps = 32/327 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV + SI L +AG + ++ M ER P YN ++
Sbjct: 294 PDTVTFNSIMDGLCKAGKFERAHSLLAVMA------------ER---NCRPSCCTYNTLI 338
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ +++ + A ++ + G P TY ++ + + G+ + +E +++ K
Sbjct: 339 SGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCT 398
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L++ L + KT++A +E + G V Y + LC G+ ++AL
Sbjct: 399 PNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKM 458
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + K P V++YT L++ +G + A +IF +M C+ + + +V Y +
Sbjct: 459 VEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCK 518
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+EA K+ + +G P I +N ++D E R D++ V++
Sbjct: 519 SSRTKEAQKVVDGI-------------RG--TPYIDVYNALMDGYCKEGRLDEIPNVFED 563
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
M G N K + ++ + GKV+
Sbjct: 564 MACRGCVPNIKTYNIVMDGLCKHGKVD 590
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 116/284 (40%), Gaps = 46/284 (16%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D PD Y+ V+ + + Q + AF +L + K +G KP + Y ++ G+
Sbjct: 153 DAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLK 212
Query: 110 LVYEFFRKV--------------------------------QKSYIPNALAYKVLVNTLW 137
E FR + ++ P+ Y +L++ L
Sbjct: 213 DALEIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLC 272
Query: 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV 197
+ KTD+A + +M RG+ + + LC AGK E A + + + +P
Sbjct: 273 KASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCC 332
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+Y LI N+ A + ++ + + P++VT +I+ + G +EA +L +EM
Sbjct: 333 TYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEM 392
Query: 257 AEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELV 299
+ KG P++ T+NT++D C A K EL+
Sbjct: 393 S-----------GKGCT-PNLVTYNTLIDGLCKASKTEKAYELL 424
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 130/305 (42%), Gaps = 30/305 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y + L + G + E F ++SM S G + PD+V YN ++
Sbjct: 571 PNIKTYNIVMDGLCKHGKVDEAFPFLESMHS-------AGCV--------PDVVSYNIII 615
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + + A VL Q+ Q G P A TY +M +++ + + K+ +
Sbjct: 616 DGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVD 675
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD-LARCLCSAGKCEEALM 182
P+ + Y L++ L + + +A + +M R G V SA Y+ + LC G ++AL+
Sbjct: 676 PDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALL 735
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLE 242
MD + + V+Y I G + A+ + ++M + V+ ++ +
Sbjct: 736 LMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTL--RDEVSYTTVIIGLCK 793
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ A KL +EM KGL I +TFN ++DA KR D+ +
Sbjct: 794 AEQLDRASKLAREMVA----------VKGLCITS-HTFNLLIDAFTKTKRLDEALTLLGL 842
Query: 303 MLHHG 307
M+ G
Sbjct: 843 MVQRG 847
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 126/293 (43%), Gaps = 26/293 (8%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S P + S A L ++ +++ DV+D + L LE+W L+P +V +
Sbjct: 42 SGIPHRQLHLSTARKLARSESLQQ--DVLDLLGLLQSGSNIRERLEQWRGTLQPAVV--S 97
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQK 120
VL R K + A +G K S T ++ +L G + + F R +
Sbjct: 98 RVLQ---RLKDPQTAIVFFVWAGDRGFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDA 154
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
Y P++ Y +++ +L + + D+A + ++ + RG ++Y L R C G+ ++A
Sbjct: 155 GYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDA 214
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
L +I + P ++Y +I + A +M + +P++ T NI++
Sbjct: 215 L----EIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDG 270
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEK 291
+ ++A ++ EM + V PD TFN+++D C A K
Sbjct: 271 LCKASKTDKASEMLHEMVDRG------------VTPDTVTFNSIMDGLCKAGK 311
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 120/289 (41%), Gaps = 51/289 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y I L +A KE V+D M + G + PD V YN ++
Sbjct: 606 PDVVSYNIIIDGLFKASKPKEARQVLDQM-------IQAG--------IPPDAVTYNTLM 650
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS--Y 122
+ ++++ A +L+ + + G P TY ++ + + YE ++ ++
Sbjct: 651 AQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCV 710
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA-- 180
+ Y +++ L +EG +A+ ++ M G+ + Y LC G+ +EA
Sbjct: 711 VSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASS 770
Query: 181 -LMQMDKI-------------CK--------------VANKPLVVS---YTGLIQACLDS 209
L +MD + CK VA K L ++ + LI A +
Sbjct: 771 LLSEMDTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKT 830
Query: 210 GNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
+ A + M + CSP+++T N+++ + ++A +LF EMA
Sbjct: 831 KRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMA 879
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 92/223 (41%), Gaps = 19/223 (8%)
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA 191
+ TL G +D + E M G + Y+ + + LC + ++A +DK
Sbjct: 131 FLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRG 190
Query: 192 NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMK 251
KP V YT L +A +G +++A IF +N SP+ + N ++ + + A++
Sbjct: 191 FKPEVSVYTILTRAFCKTGRLKDALEIF---RNIPSPDAIAYNAIIHGHCRKNDCDGALE 247
Query: 252 LFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
+EM E V PD++T+N ++D + D + M+ G+ +
Sbjct: 248 FLKEMNERK------------VAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPD 295
Query: 312 AKRHLRMILDASRAGKVE----LLEITWEHLARADRITPPALI 350
++ +AGK E LL + E R T LI
Sbjct: 296 TVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLI 338
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 48/238 (20%), Positives = 94/238 (39%), Gaps = 55/238 (23%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM-------------RSLPKKKFKTGTLER--- 48
PD V Y ++ L Q + + ++++ M ++ + K G L++
Sbjct: 676 PDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALL 735
Query: 49 -----WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY--GL---- 97
+E + V YN ++ + + + A +L ++ + S TT GL
Sbjct: 736 LMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGLCKAE 795
Query: 98 --------------VMEVMLACGKYNLVYEFFRK--------------VQKSYIPNALAY 129
V + + +NL+ + F K VQ+ P+ + Y
Sbjct: 796 QLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITY 855
Query: 130 KVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
+++ L + K D+A ++M RGIV S+ Y L LC G+ +EAL ++++
Sbjct: 856 NMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEM 913
>gi|414888267|tpg|DAA64281.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
Length = 873
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 150/349 (42%), Gaps = 33/349 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV+YR I AG++ ++ M + TG D Y ++
Sbjct: 284 PDTVSYRHIVDAFASAGNLSRAAELFSEMAA-------TGH--------TADASAYLGLM 328
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
A R A VL+Q++ G P+A TY +++++ G+++ V + FR+++ + P
Sbjct: 329 EAHTRVGATADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTAVPP 388
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ Y VL G E V DM + G+ ++ G +A +
Sbjct: 389 DTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVL 448
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEH 243
+ + + P +YTGL++A + + A FN M S P L T N + AY
Sbjct: 449 EYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARG 508
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
GLF+EA +F M+ ++ I + D +F+ +++A R DD Y M
Sbjct: 509 GLFQEAEAIFSRMSNNAG-IQKSKD----------SFDALIEAYCQGSRLDDAVKAYMEM 557
Query: 304 LHHGLHFNA-KRHLRMILDA-SRAGKVELLEITWEHLARADRITPPALI 350
FN +R L +L+A AG ++ + +E L + +T P++I
Sbjct: 558 RKS--RFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSS--VTMPSVI 602
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 95/211 (45%), Gaps = 3/211 (1%)
Query: 51 PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
P + PD+ YN +L A R + + +L + + G P +Y +++ + G +
Sbjct: 245 PSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDAFASAGNLSR 304
Query: 111 VYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
E F ++ + + +A AY L+ R G T +AV+ + M+ G +AA Y L
Sbjct: 305 AAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPTAATYRVLLD 364
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSP 228
G+ + + Q+ + + A P +Y L + D G + +F+ M K P
Sbjct: 365 LYGRQGRF-DGVRQLFREMRTAVPPDTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQP 423
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
++VTC ++ A GL +A ++ + M +
Sbjct: 424 DMVTCENVMAACGHGGLHGDAREVLEYMTRE 454
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 103/262 (39%), Gaps = 28/262 (10%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK-------YNLVY 112
Y +++ A R E A +L Q+K G P+A TY V+ AC + ++++
Sbjct: 177 YTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLA---ACARATDPPVPFDMLL 233
Query: 113 EFFRKVQK----SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
F +++ S P+ Y L+ D++ + M G+ Y +
Sbjct: 234 GLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIV 293
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCS 227
SAG A ++ + +Y GL++A G +A + QM+ + C+
Sbjct: 294 DAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCA 353
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P T +++ Y G F+ +LF+EM + V PD T+N +
Sbjct: 354 PTAATYRVLLDLYGRQGRFDGVRQLFREM-------------RTAVPPDTATYNVLFRVF 400
Query: 288 AAEKRWDDLELVYKRMLHHGLH 309
+ ++ ++ ML G+
Sbjct: 401 GDGGFFKEVVELFHDMLKTGVQ 422
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 67/327 (20%), Positives = 130/327 (39%), Gaps = 45/327 (13%)
Query: 15 VTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWE 74
V G A + E+ +ID + +LP + LE RL + + AV RR W+
Sbjct: 63 VPSGNARNSYEVESLIDRLSNLPPRGSIARCLETARHRLT--LQDFAAVYREFSRRGDWQ 120
Query: 75 GAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNL--VYEFFRKVQKSYIPNALAYKV 131
+ + + +++Q +P + +V+ V+ G L E F + AL+Y
Sbjct: 121 RSLRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPAES-RTALSYTS 179
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV- 190
L+ R +EA + ++ M+ G+ +AA Y + L + + + + D + +
Sbjct: 180 LIAAYARNALHEEARALLDQMKATGVAPTAATYNTV---LAACARATDPPVPFDMLLGLF 236
Query: 191 ---------ANKPLVVSYTGLI-QACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240
+ +P + +Y L+ A + S Q+ + ++ SP+ V+ +V A+
Sbjct: 237 AEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDAF 296
Query: 241 LEHGLFEEAMKLFQEMA------------------------EDSNHINREYDKKGLVIPD 276
G A +LF EMA D+ + R+ G P
Sbjct: 297 ASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCA-PT 355
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRM 303
T+ +LD + R+D + +++ M
Sbjct: 356 AATYRVLLDLYGRQGRFDGVRQLFREM 382
>gi|83744090|gb|ABC42331.1| PPR protein [Oryza sativa Indica Group]
Length = 506
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 115/261 (44%), Gaps = 16/261 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK--PSATTYGLVMEVMLACGKYNLVY 112
P++ + +L + + A +L + G P+ +Y V + +L G + Y
Sbjct: 159 PNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVTDGLLKGGDPDKAY 218
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+R+ + + +PN + Y ++ L + D+A+ + M + G+ + Y L
Sbjct: 219 ATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGF 278
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
CS+G+ EA+ ++K+C +P VV+Y+ + +G A IF M K P++
Sbjct: 279 CSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPDI 338
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T + ++ Y G E LF M + PD Y FNT++ A A +
Sbjct: 339 TTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQ------------PDHYVFNTLIYASAKQ 386
Query: 291 KRWDDLELVYKRMLHHGLHFN 311
+ D+ LV+ +M H GL N
Sbjct: 387 GKVDEAMLVFSKMRHQGLKPN 407
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 125/305 (40%), Gaps = 29/305 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V+Y ++ L + G P K + T E D R+ P++V Y++++
Sbjct: 196 PNVVSYSTVTDGLLKGGD--------------PDKAYAT-YREMLDRRILPNVVTYSSII 240
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
A + + + A V ++ + G P+ TY ++ + G+ +F K+ + +
Sbjct: 241 AALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVE 300
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y ++ L + G+ EA M +RG+ Y L G E
Sbjct: 301 PNVVTYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGL 360
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
D + + +P + LI A G + A +F++M++ PN VT N ++ Y +
Sbjct: 361 FDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRHQGLKPNCVTYNTLINGYCK 420
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
E A+ LFQEM + V P+ T+N ML R + Y +
Sbjct: 421 ITRMENALALFQEMVSNG------------VSPNFITYNIMLQGLFRTGRTGTAKEFYVQ 468
Query: 303 MLHHG 307
++ G
Sbjct: 469 IIKSG 473
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/209 (18%), Positives = 97/209 (46%), Gaps = 16/209 (7%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL-M 182
P Y +L+ G+ D +A+ + ++G ++ L + LC+ + ++A+ +
Sbjct: 88 PTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDI 147
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN---FCSPNLVTCNIMVKA 239
+ + ++ P V S+T +++ Q A + + M + C PN+V+ + +
Sbjct: 148 VLRGMTELGCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVTDG 207
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
L+ G ++A ++EM D++ ++P++ T+++++ A + D V
Sbjct: 208 LLKGGDPDKAYATYREM----------LDRR--ILPNVVTYSSIIAALCKGQAMDKAMEV 255
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+ RM+ +G+ N + ++ +G++
Sbjct: 256 HDRMVKNGVTPNCFTYTSLVHGFCSSGQL 284
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 15/165 (9%)
Query: 145 AVSAVEDMERRG---IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
AVS M R G + + Y L C CSAG+ + + + K + + +
Sbjct: 71 AVSRFNRMARAGASMVTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNP 130
Query: 202 LIQA-CLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
L++ C D + M C PN+ + I++K +EA++L MA+D
Sbjct: 131 LLKGLCADKRTDDAMDIVLRGMTELGCVPNVFSHTIILKGLCHENRSQEALELLHMMADD 190
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
G +P++ +++T+ D D Y+ ML
Sbjct: 191 G----------GGCLPNVVSYSTVTDGLLKGGDPDKAYATYREML 225
>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
Length = 569
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 136/299 (45%), Gaps = 19/299 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P +++N V+ R + A V +Q+ P TY ++ + G+
Sbjct: 111 MNPGTLLHNVVIGGLCRAGRLRHALGVYRQM-NDAHPPDFLTYTKLVHGLSKAGRLRDAV 169
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ ++ V ++P+ V+V +L + D+A VE+M RG+ +A Y L L
Sbjct: 170 QVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGL 229
Query: 172 CSAGKCEEAL-MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNL 230
C + +EA+ + + ++ + P +V+Y+ +I +G +++A IF +M C+P
Sbjct: 230 CKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS--CAPTA 287
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T N ++ Y G +EA++L +M +D+ PD+ T+ T++ A
Sbjct: 288 ITYNSLIGGYCRAGDMDEAIRLLGKMVDDN------------CAPDVITYTTLMSAFCKM 335
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPAL 349
R DD ++++M+ + L + ++ G++E E + R R PP +
Sbjct: 336 GRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITR--RGCPPTI 392
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 130/275 (47%), Gaps = 19/275 (6%)
Query: 29 VIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ 88
VI + + + G + + PD + Y +++ + + A VLQ++
Sbjct: 121 VIGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARH 180
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVS 147
P TT +V++ + + + E + + + NA+ Y LV+ L + + DEAV+
Sbjct: 181 VPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVA 240
Query: 148 AV-EDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
+ ++ RRG Y + LC AG+ +A+ D +++ P ++Y LI
Sbjct: 241 LLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAV---DIFEEMSCAPTAITYNSLIGGY 297
Query: 207 LDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
+G++ A + +M + C+P+++T ++ A+ + G ++A +LFQ+M +N ++
Sbjct: 298 CRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMV--ANKLS- 354
Query: 266 EYDKKGLVIPDIYTFNTMLDACAAEKRWDD-LELV 299
PD+ TF +++D E R +D LEL+
Sbjct: 355 ---------PDVVTFTSLVDGLCGEGRMEDALELL 380
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/256 (19%), Positives = 117/256 (45%), Gaps = 19/256 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ + G + + +++ M + +L PD+V + +++
Sbjct: 320 PDVITYTTLMSAFCKMGRLDDAYELFQQMVA---------------NKLSPDVVTFTSLV 364
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ + E A +L+++ ++G P+ TY V++ + E + + ++
Sbjct: 365 DGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFV 424
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRG--IVGSAALYYDLARCLCSAGKCEEAL 181
PN + Y +LV R G+TD+A+ ++ + G S A+Y + LC G+ ++A+
Sbjct: 425 PNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAV 484
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAY 240
+++ + P ++ ++ A + Q A + +M + +P TC+ +V AY
Sbjct: 485 QFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAY 544
Query: 241 LEHGLFEEAMKLFQEM 256
G+ ++A +L E+
Sbjct: 545 CRAGMIQKADELASEL 560
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 129/314 (41%), Gaps = 40/314 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM---RSLPKKKFKTGTLERW-------DPR-- 52
PD + Y + L +AG +++ V+ M R +P T ++ D R
Sbjct: 147 PDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDAREL 206
Query: 53 --------LEPDIVVYNAVLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
+ + + Y+A+++ C + E +L ++ ++G P TY V++ +
Sbjct: 207 VEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLC 266
Query: 104 ACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ + F ++ S P A+ Y L+ R G DEA+ + M
Sbjct: 267 KAGRLRDAVDIFEEM--SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVIT 324
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANK--PLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L C G+ ++A ++ VANK P VV++T L+ G +++A + +
Sbjct: 325 YTTLMSAFCKMGRLDDAYELFQQM--VANKLSPDVVTFTSLVDGLCGEGRMEDALELLEE 382
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
+ + C P + T N +V Y + +A +L ++ +G V P+ T+
Sbjct: 383 ITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVA-----------DFRSRGFV-PNTVTY 430
Query: 281 NTMLDACAAEKRWD 294
N ++ C R D
Sbjct: 431 NILVAGCCRAGRTD 444
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 108/226 (47%), Gaps = 22/226 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTLERWDPRLEPDIVVYNA 62
PD V + S+ L G +++ ++++ + R P P I YN
Sbjct: 355 PDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCP-----------------PTIYTYNC 397
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV--QK 120
V++ + Q A ++ + +G P+ TY +++ G+ + ++ ++ +
Sbjct: 398 VVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEG 457
Query: 121 SYIPNALA-YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
P ++A Y ++++ L R+G+TD+AV E+M +RG V +AA + + LC A + ++
Sbjct: 458 GPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQ 517
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
A ++++ K + P + ++ A +G IQ A + ++++ +
Sbjct: 518 AHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELRLY 563
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 96/230 (41%), Gaps = 19/230 (8%)
Query: 87 GQKPSATTYGLVMEVMLACGKYN----LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKT 142
G ++T+ +V+ + A K L+ + R + P+ + ++ L T
Sbjct: 5 GYPSDSSTFAVVLRGLHASAKLRHLGPLLLDEIR--DRGLSPDPVELNTILAELCDARDT 62
Query: 143 DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGL 202
A++ + M G V YY+L LC A +EA+ + + P + + +
Sbjct: 63 TTAMALFDKMAELGAVNHTT-YYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVV 121
Query: 203 IQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNH 262
I +G +++A ++ QM + P+ +T +V + G +A+++ QEM + H
Sbjct: 122 IGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVS-ARH 180
Query: 263 INREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
+PD T ++ + R DD + + MLH G+ NA
Sbjct: 181 -----------VPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANA 219
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/255 (20%), Positives = 102/255 (40%), Gaps = 34/255 (13%)
Query: 78 WVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLW 137
+L +++ +G P ++ + F K+ + N Y L++ L
Sbjct: 32 LLLDEIRDRGLSPDPVELNTILAELCDARDTTTAMALFDKMAELGAVNHTTYYNLIHPLC 91
Query: 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL---MQMDKICKVANKP 194
+ DEA+ + DM+ RG+ L+ + LC AG+ AL QM+ A+ P
Sbjct: 92 KARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMND----AHPP 147
Query: 195 LVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEHGLFEEAMKLF 253
++YT L+ +G +++A + +M + P+ T ++V++ ++A +L
Sbjct: 148 DFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELV 207
Query: 254 QEMAEDSNHINR-------------------------EYDKKGLVIPDIYTFNTMLDACA 288
+EM N E ++G PDI T++T++D
Sbjct: 208 EEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFT-PDIVTYSTVIDGLC 266
Query: 289 AEKRWDDLELVYKRM 303
R D +++ M
Sbjct: 267 KAGRLRDAVDIFEEM 281
>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
gi|224030695|gb|ACN34423.1| unknown [Zea mays]
gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
Length = 756
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 116/283 (40%), Gaps = 29/283 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
DT Y + L + +K L V + M D ++PD+V N ++
Sbjct: 159 DTAVYNHLLNVLAEGSRMKLLESVYNEM---------------TDRGIQPDVVTLNTLIK 203
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
A R Q A +L+++ P TT+ +M+ + G K+ ++ P
Sbjct: 204 ALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSP 263
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ VL+N + G+ ++A+ ++ G Y CLC G AL M
Sbjct: 264 TRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVM 323
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEH 243
D + + + P V +Y +I +G + A I NQM + C P+ T N ++ A
Sbjct: 324 DLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQ 383
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
EEA+ L RE KGL PD+YTFN +++A
Sbjct: 384 NRLEEALDL-----------ARELTVKGLS-PDVYTFNILINA 414
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 122/277 (44%), Gaps = 14/277 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P V N ++N + + E A +Q+ G +P TY + + G + +
Sbjct: 263 PTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKV 322
Query: 115 FR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+Q+ + P+ Y ++N L + G+ DEA V M RG + + L LCS
Sbjct: 323 MDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCS 382
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
+ EEAL ++ P V ++ LI A G+ +F +MK+ C+P+ VT
Sbjct: 383 QNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVT 442
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
NI++ G A+ L +EM +SN R T+NT++DA + R
Sbjct: 443 YNILIDHLCSMGKLVNALDLLKEM--ESNGCPRS----------TVTYNTIIDALCKQMR 490
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++ E V+ +M HG+ +A +I +A +++
Sbjct: 491 IEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRID 527
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/347 (21%), Positives = 143/347 (41%), Gaps = 30/347 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + L Q GH+ V+D M + G +PD+ YN V+
Sbjct: 298 PDQVTYNTFVHCLCQNGHVSHALKVMDLM-------LQEGH--------DPDVFTYNTVI 342
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
N + + + A ++ Q+ +G P TT+ ++ + + + + R++ K
Sbjct: 343 NCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLS 402
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + +L+N L + G + E+M+ G Y L LCS GK AL
Sbjct: 403 PDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDL 462
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ ++ V+Y +I A I+ A +F+QM + S + VT N ++ +
Sbjct: 463 LKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCK 522
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
++A +L ++M K+GL P T+N++L + + +
Sbjct: 523 AKRIDDATELIEQMV-----------KEGLQ-PSNITYNSILTHYCKQGDLKKAADILET 570
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVEL-LEITWEHLARADRITPPA 348
M +G + + +I +AG+ ++ L++ + R TP A
Sbjct: 571 MTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKA 617
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/282 (19%), Positives = 120/282 (42%), Gaps = 30/282 (10%)
Query: 56 DIVVYNAVLNACVRRKQWEGAF----WVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
D AV +++ GAF ++++++++G + A +E +++
Sbjct: 84 DFAPSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVRSFVESYARLRRFDDA 143
Query: 112 YEFFRKVQKSYIPNA--LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
+ R ++ A Y L+N L + S +M RGI L +
Sbjct: 144 VDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIK 203
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSP 228
LC A + A++ ++++ A P ++T L+Q ++ G+I+ A + + M+ CSP
Sbjct: 204 ALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSP 263
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAED------------------SNHINREYDKK 270
VT N+++ Y + G E+A+ Q+ D + H++
Sbjct: 264 TRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVM 323
Query: 271 GLVI-----PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
L++ PD++T+NT+++ + D+ + + +M+ G
Sbjct: 324 DLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRG 365
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 103/255 (40%), Gaps = 18/255 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + L G + D++ M S PR V YN ++
Sbjct: 438 PDEVTYNILIDHLCSMGKLVNALDLLKEMES------------NGCPR---STVTYNTII 482
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+A ++ + E A V Q+ G SA T+ +++ + + + E + V++
Sbjct: 483 DALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQ 542
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y ++ ++G +A +E M G Y L LC AG+ + AL
Sbjct: 543 PSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKL 602
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLE 242
+ + +P +Y +IQ+ N+++A +F +M P+ +T I+ +
Sbjct: 603 LRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCR 662
Query: 243 -HGLFEEAMKLFQEM 256
G +EA EM
Sbjct: 663 GGGPIKEAFDFLVEM 677
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 17/147 (11%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V Y ++ L +AG + ++ MR + P YN V+
Sbjct: 579 DVVTYGTLINGLCKAGRTQVALKLLRGMRI---------------KGIRPTPKAYNPVIQ 623
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML-ACGKYNLVYEFF-RKVQKSYI 123
+ RR A + +++ + G+ P A TY +V + G ++F V K ++
Sbjct: 624 SLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFM 683
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVE 150
P ++++L L G D +SA+E
Sbjct: 684 PEFSSFRMLAEGLLNLGMDDYLISAIE 710
>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g22470, mitochondrial-like [Glycine max]
Length = 468
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 138/313 (44%), Gaps = 31/313 (9%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPR-LEPDIVVY 60
S+ P+ V Y +I L + + E +D+ M D R + P+++ Y
Sbjct: 145 STRPNVVMYSAIIDGLCKDKLVNEAYDLYSEM----------------DAREIFPNVITY 188
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N ++ A Q GAF +L ++ + P T+ ++++ + GK N F VQ
Sbjct: 189 NTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGK-NAKQIFHAMVQM 247
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
PN +Y +++N L + + DEA++ + +M + +V Y L LC +G+ A
Sbjct: 248 GVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSA 307
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKA 239
L M+++ VV+YT L+ A + N+ A +F +MK P + T ++
Sbjct: 308 LNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDG 367
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ G + A +LFQ + KG I D++T+ M+ E +D+ +
Sbjct: 368 LCKGGRLKNAQELFQHLLV-----------KGCCI-DVWTYTVMISGLCKEGMFDEALAI 415
Query: 300 YKRMLHHGLHFNA 312
+M +G NA
Sbjct: 416 KSKMEDNGCIPNA 428
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/322 (22%), Positives = 149/322 (46%), Gaps = 24/322 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+E ++V + ++N Q +F +L ++ + G P+ T+ +M+ + G+ +
Sbjct: 41 IEQNLVTLSILINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLL 100
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F KV +++ N ++Y L+N L + G+T A+ + +E R + +Y + L
Sbjct: 101 HFHDKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGL 160
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPN 229
C EA ++ P V++Y LI A +G + A + ++M KN +P+
Sbjct: 161 CKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNI-NPD 219
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+ T +I++ A + G + A ++F M + V P++Y++N M++
Sbjct: 220 VYTFSILIDALCKEG--KNAKQIFHAMVQMG------------VNPNVYSYNIMINGLCK 265
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLAR---ADRIT 345
KR D+ + + MLH + + + +I ++G++ L + E R AD +T
Sbjct: 266 CKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVT 325
Query: 346 PPALIKERFCNRLENKDYGSAI 367
+L+ + C +N D +A+
Sbjct: 326 YTSLL-DALCKN-QNLDKATAL 345
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV Y S+ L ++G I ++++ M R P D+V Y ++L
Sbjct: 286 PDTVTYNSLIDGLCKSGRITSALNLMNEMH------------HRGQP---ADVVTYTSLL 330
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+A + + + A + ++K++G +P+ TY +++ + G+ E F+ + K
Sbjct: 331 DALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCC 390
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ Y V+++ L +EG DEA++ ME G + +A + + R L
Sbjct: 391 IDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSL 438
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 80/213 (37%), Gaps = 39/213 (18%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + PD V YN++++ + + A ++ ++ +GQ TY +++ + C
Sbjct: 278 EMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDAL--CK 335
Query: 107 KYNL--VYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
NL F K+++ I P Y L++ L + G+ A + + +G
Sbjct: 336 NQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWT 395
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + LC G +EAL K+
Sbjct: 396 YTVMISGLCKEGMFDEALAIKSKM----------------------------------ED 421
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
N C PN VT I++++ E ++A KL EM
Sbjct: 422 NGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEM 454
>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
Length = 762
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 143/340 (42%), Gaps = 48/340 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLERWDPR 52
PD V Y S+ L + G E + DSM +L + G L
Sbjct: 299 PDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHAL 358
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L+ PD V+N ++ A ++++ + A V +++Q G P+ TYG V+ ++
Sbjct: 359 LDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCK 418
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + +F + + + PN + Y L+++L K D+A + +M RGI +
Sbjct: 419 SGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIF 478
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ + C G+ E+ D + ++ KP V++Y+ LI +G + A + + M
Sbjct: 479 FNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMF 538
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ P+ VT N ++ Y ++A+ LF+EM V P+I T+N
Sbjct: 539 SVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSG------------VSPNIITYNI 586
Query: 283 MLD--------ACAAE------KRWDDLELVYKRMLHHGL 308
+L A A E K LEL ++ HGL
Sbjct: 587 ILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGL 626
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 146/341 (42%), Gaps = 29/341 (8%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S PD V+Y ++ I F DS K + T E D R+ PD+V Y+
Sbjct: 191 GSAPDVVSYTTV---------INGFFKEGDS-----DKAYST-YHEMLDRRISPDVVTYS 235
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
+++ A + + + A VL + + G P+ TY ++ + + F +K++
Sbjct: 236 SIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSD 295
Query: 122 YI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ P+ + Y L++ L + G++ EA + M +RG+ A Y L + + G E
Sbjct: 296 GVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEM 355
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
+D + + P + LI A + A +F++M+ +PN+VT ++
Sbjct: 356 HALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGI 415
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ G ++AM F++M ++ + P+I + +++ + +WD E +
Sbjct: 416 LCKSGSVDDAMLYFEQMIDEG------------LTPNIIVYTSLIHSLCIFDKWDKAEEL 463
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
ML G+ N +I + G+V E ++ + R
Sbjct: 464 ILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVR 504
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 129/301 (42%), Gaps = 18/301 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQL---KQQGQKPSATTYGLVMEVMLACGKYNLV 111
PD+ +L + + A +L + + G P +Y V+ G +
Sbjct: 156 PDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKA 215
Query: 112 YEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
Y + ++ I P+ + Y ++ L + D+A+ + M + G++ + Y +
Sbjct: 216 YSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHG 275
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
CS+ + +EA+ + K+ +P VV+Y L+ +G A IF+ M K P+
Sbjct: 276 YCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPD 335
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+ T +++ Y G E L M + H PD + FN ++ A A
Sbjct: 336 IATYCTLLQGYATKGALVEMHALLDLMVRNGIH------------PDHHVFNILICAYAK 383
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPAL 349
+++ D+ LV+ +M HGL+ N + +I ++G V+ + +E + + +TP +
Sbjct: 384 QEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMID-EGLTPNII 442
Query: 350 I 350
+
Sbjct: 443 V 443
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/364 (19%), Positives = 142/364 (39%), Gaps = 69/364 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR-------------------SLPKKKFKTGT 45
PD V Y SI L + + + +V+ +M S + K G
Sbjct: 229 PDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGF 288
Query: 46 LERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L++ +EPD+V YN++++ + + A + + ++G +P TY +++
Sbjct: 289 LKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYAT 348
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G ++ + ++ I P+ + +L+ ++ K DEA+ M + G+ +
Sbjct: 349 KGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVT 408
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC----------------L 207
Y + LC +G ++A++ +++ P ++ YT LI + L
Sbjct: 409 YGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEML 468
Query: 208 DSGNIQNAAYIFNQMKNFC--------------------SPNLVTCNIMVKAYLEHGLFE 247
D G N + + + + C PN++T + ++ Y G +
Sbjct: 469 DRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMD 528
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
EA KL M + PD T+NT+++ R DD ++K M+ G
Sbjct: 529 EATKLLSSMFSVG------------MKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSG 576
Query: 308 LHFN 311
+ N
Sbjct: 577 VSPN 580
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 14/165 (8%)
Query: 145 AVSAVEDMERRG---IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
AVS M R G + + Y L C C AG+ + + + K + +++T
Sbjct: 68 AVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTP 127
Query: 202 LIQA-CLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
L++ C D + +M C P++ +C I++K + +EA++L MA+
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMAD- 186
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
D+ G PD+ ++ T+++ E D Y ML
Sbjct: 187 --------DRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEML 223
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 104/243 (42%), Gaps = 11/243 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P+++ Y+ +++ + + A +L + G KP TY ++ + +
Sbjct: 507 VKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDAL 566
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F+++ S + PN + Y +++ L+ +T A + + G + Y + L
Sbjct: 567 ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGL 626
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C +EAL +C + ++ +I A L G A +F + N P++
Sbjct: 627 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 686
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKGLVIPDIYTFNT 282
T ++M + +E GL EE LF M E+ N I R+ ++G I T+ +
Sbjct: 687 RTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRG-DITRAGTYLS 745
Query: 283 MLD 285
M+D
Sbjct: 746 MID 748
>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
lyrata]
gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
lyrata]
Length = 332
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 127/278 (45%), Gaps = 16/278 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+ D+V +N ++N R + A ++ ++ + G +P+ TYG ++ M G +
Sbjct: 7 QHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDSALN 66
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
RK+ +S+I + + Y +++ L ++G +A + +M +GI + Y + C
Sbjct: 67 LLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMIDGCC 126
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNL 230
S GK +A + + + P VV++ LI A + G I A ++ +M +N P+
Sbjct: 127 SYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRNI-FPDT 185
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T N ++ + +H ++A +F M P++ T NT++ C
Sbjct: 186 ITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGS------------PNVITINTLIGGCCRA 233
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
KR DD + ML GL ++ + +I +AG +
Sbjct: 234 KRVDDGIKLLHEMLRRGLVPDSVSYNTLIHGFCQAGDL 271
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/254 (20%), Positives = 106/254 (41%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y +I + + G +++ M + ++ D+V+Y A++
Sbjct: 43 PNEVTYGTIVNGMCKMGDTDSALNLLRKMD---------------ESHIKADVVIYTAII 87
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + A + ++ +G P+ TY +++ + GK+ + R + +S +
Sbjct: 88 DRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMIDGCCSYGKWTDAEQLLRDMIESNVD 147
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + L+N +EGK EA +M R I Y L C + ++A
Sbjct: 148 PDVVTFNALINAFVKEGKISEAEELYREMLGRNIFPDTITYNSLIDGFCKHSRLDDAKHI 207
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
D + P V++ LI C + + + + ++M + P+ V+ N ++ + +
Sbjct: 208 FDLMVSKGGSPNVITINTLIGGCCRAKRVDDGIKLLHEMLRRGLVPDSVSYNTLIHGFCQ 267
Query: 243 HGLFEEAMKLFQEM 256
G A LFQEM
Sbjct: 268 AGDLNAAQDLFQEM 281
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 13/188 (6%)
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
V+K + +A+ L+N L REG+ EA + V+ M G + Y + +C G
Sbjct: 2 VEKGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDT 61
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIM 236
+ AL + K+ + K VV YT +I G+ A +F +M + PN++T N M
Sbjct: 62 DSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCM 121
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ +G + +A +L ++M E + V PD+ TFN +++A E + +
Sbjct: 122 IDGCCSYGKWTDAEQLLRDMIESN------------VDPDVVTFNALINAFVKEGKISEA 169
Query: 297 ELVYKRML 304
E +Y+ ML
Sbjct: 170 EELYREML 177
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 20/233 (8%)
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
M +G + L LC G+ EA +D++ + ++P V+Y ++ G+
Sbjct: 1 MVEKGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGD 60
Query: 212 IQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270
+A + +M ++ ++V ++ + G +A LF EM +DK
Sbjct: 61 TDSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEM----------HDKG 110
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-E 329
+ P++ T+N M+D C + +W D E + + M+ + + +I + GK+ E
Sbjct: 111 --IFPNVLTYNCMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISE 168
Query: 330 LLEITWEHLAR---ADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSP 379
E+ E L R D IT +LI + FC D +VS GSP
Sbjct: 169 AEELYREMLGRNIFPDTITYNSLI-DGFCKHSRLDDAKHIFDLMVSK--GGSP 218
>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
Length = 977
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 79/319 (24%), Positives = 138/319 (43%), Gaps = 45/319 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ T Q + V+ MR + + PD YN+++
Sbjct: 453 PNVVIYTTLIKTFLQKSRFGDAVRVLKEMR---------------EQGIAPDTFCYNSLI 497
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ K+ + A L ++ + G KP A TYG + + G++ ++ ++ ++ I
Sbjct: 498 IGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVI 557
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + L+N ++GK EA SA M +GI+G A Y L L GK +A
Sbjct: 558 PNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEI 617
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ P V SY LI GN+Q A+ IF++M + + N++ N+++ +
Sbjct: 618 FHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCR 677
Query: 243 HGLFEEAMKLFQEMA------------------------EDSNHINREYDKKGLVIPDIY 278
G E+A +L EM+ ++ + E KGLV PD +
Sbjct: 678 SGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLV-PDSF 736
Query: 279 TFNTMLDACAAEKRWDDLE 297
+ T++D C R +D+E
Sbjct: 737 VYTTLVDGCC---RLNDVE 752
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/301 (21%), Positives = 126/301 (41%), Gaps = 27/301 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P Y +++ R K + +L ++K++ S TYG ++ M + G + Y
Sbjct: 383 PGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNI 442
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++ S PN + Y L+ T ++ + +AV +++M +GI Y L L
Sbjct: 443 VKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSK 502
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMKNFCSPNLVT 232
A K +EA + ++ + KP +Y I +++G +A Y+ ++ PN V
Sbjct: 503 AKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVL 562
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAE------------------------DSNHINREYD 268
C ++ Y + G EA F+ M E D+ I E
Sbjct: 563 CTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMR 622
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
KG+ PD++++ T++D + ++ M+ GL N + ++ R+G++
Sbjct: 623 GKGIA-PDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEI 681
Query: 329 E 329
E
Sbjct: 682 E 682
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/266 (19%), Positives = 110/266 (41%), Gaps = 25/266 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PD+ Y +++ + + A + ++ Q G + Y +++ G+
Sbjct: 626 IAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAK 685
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E ++ K + PNA+ Y +++ + G EA ++M+ +G+V + +Y L
Sbjct: 686 ELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGC 745
Query: 172 CSAGKCEEALMQM---DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN---- 224
C E A+ +K C ++ P + LI G + + N++ +
Sbjct: 746 CRLNDVERAITIFETNEKGCASSSAP----FNALINWVFKFGKTELTTDMINRLMDGSFD 801
Query: 225 -FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
F PN VT NIM+ + G E A +LF M +K ++P + T+ ++
Sbjct: 802 KFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHM------------QKANLMPTVITYTSL 849
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLH 309
L+ R ++ V+ ++ G+
Sbjct: 850 LNGYDKMGRRSEMFSVFDEVIAAGIE 875
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 106/263 (40%), Gaps = 27/263 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y +I ++G + E F + D M K K L PD VY ++
Sbjct: 698 PNAVTYCTIIDGYCKSGDLAEAFQLFDEM------KLKG---------LVPDSFVYTTLV 742
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ C R E A + + ++G S+ + ++ + GK L + ++
Sbjct: 743 DGCCRLNDVERAITIFET-NEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFD 801
Query: 124 ----PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
PN + Y ++++ L +EG + A M++ ++ + Y L G+ E
Sbjct: 802 KFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSE 861
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM------KNFCSPNLVTC 233
D++ +P + Y+ +I A L G A + +QM + C ++ TC
Sbjct: 862 MFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTC 921
Query: 234 NIMVKAYLEHGLFEEAMKLFQEM 256
++ + + G E A K+ + M
Sbjct: 922 RALLSGFAKVGEMEVAEKVVENM 944
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/339 (21%), Positives = 125/339 (36%), Gaps = 66/339 (19%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L D V Y+ +++ ++ + + A ++ ++ G Y + VM G
Sbjct: 311 LFADNVAYSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAK 370
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F + P A AY L+ +RE + + ++++R IV S Y + +
Sbjct: 371 ALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGM 430
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-------N 224
CS+G + A + ++ +P VV YT LI+ L +A + +M+
Sbjct: 431 CSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDT 490
Query: 225 FC-----------------------------SPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
FC P+ T + Y+E G F A K +E
Sbjct: 491 FCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKE 550
Query: 256 MAEDSNHINR--------EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
M E N+ EY KKG VI +AC+A ++ M+ G
Sbjct: 551 MLECGVIPNKVLCTGLINEYCKKGKVI----------EACSA----------FRSMVEQG 590
Query: 308 LHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
+ +AK + ++ + GKV E + H R I P
Sbjct: 591 ILGDAKTYTVLMNGLVKNGKVNDAEEIF-HEMRGKGIAP 628
>gi|255661038|gb|ACU25688.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 375
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 133/285 (46%), Gaps = 14/285 (4%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + ++ PD VVYNA+LN R + + F + + + ++G + A+ + ++M + G
Sbjct: 15 EMAENKVSPDAVVYNAMLNGYFRVGRIKNCFELWELMGRKGSRNVAS-FNIMMRGLFDNG 73
Query: 107 KYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ + V + ++ + +++ Y +LV+ L + G ++++ +E E +G V A Y
Sbjct: 74 EVDQVISIWELMIENGFGEDSITYGILVDGLCKNGYANKSLHVLEIAEGKGGVLDAFSYS 133
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+ LC K +EA+ + + K KP Y LI + + ++A +F +M
Sbjct: 134 AMINGLCKEAKLDEAVSVLSGMVKNGCKPNTHVYNALINGFVGASKFEDATRVFREMGTH 193
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
CSPN+VT N ++ + F EA L +EM E KG P + T++ ++
Sbjct: 194 CSPNIVTYNTLINGLCKGERFGEAYDLVKEMLE-----------KGWK-PGVSTYSLLMK 241
Query: 286 ACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ D ++ +++ G + + H +I GK +L
Sbjct: 242 GLCLGHKLDMAINLWNQVIAKGFKPDVQMHNILIHGLCSVGKTQL 286
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 105/238 (44%), Gaps = 13/238 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D Y+A++N + + + A VL + + G KP+ Y ++ + K+ F
Sbjct: 128 DAFSYSAMINGLCKEAKLDEAVSVLSGMVKNGCKPNTHVYNALINGFVGASKFEDATRVF 187
Query: 116 RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
R++ PN + Y L+N L + + EA V++M +G + Y L + LC
Sbjct: 188 REMGTHCSPNIVTYNTLINGLCKGERFGEAYDLVKEMLEKGWKPGVSTYSLLMKGLCLGH 247
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCN 234
K + A+ +++ KP V + LI G Q A ++ M + C+PNLVT N
Sbjct: 248 KLDMAINLWNQVIAKGFKPDVQMHNILIHGLCSVGKTQLALSLYFNMNXWNCAPNLVTYN 307
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+++ + + G A+ ++ HI R GL PDI ++N L + R
Sbjct: 308 TLMEGFYKDGDLRNALAIWA-------HILR----NGLQ-PDIISYNITLKGLCSCNR 353
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 97/235 (41%), Gaps = 14/235 (5%)
Query: 74 EGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLV 133
+GA V ++ + P A Y ++ G+ +E + + + N ++ +++
Sbjct: 7 DGAERVYNEMAENKVSPDAVVYNAMLNGYFRVGRIKNCFELWELMGRKGSRNVASFNIMM 66
Query: 134 NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANK 193
L+ G+ D+ +S E M G + Y L LC G ++L ++
Sbjct: 67 RGLFDNGEVDQVISIWELMIENGFGEDSITYGILVDGLCKNGYANKSLHVLEIAEGKGGV 126
Query: 194 PLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKL 252
SY+ +I + A + + M KN C PN N ++ ++ FE+A ++
Sbjct: 127 LDAFSYSAMINGLCKEAKLDEAVSVLSGMVKNGCKPNTHVYNALINGFVGASKFEDATRV 186
Query: 253 FQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
F+EM + P+I T+NT+++ +R+ + + K ML G
Sbjct: 187 FREMGTHCS-------------PNIVTYNTLINGLCKGERFGEAYDLVKEMLEKG 228
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/190 (17%), Positives = 73/190 (38%), Gaps = 36/190 (18%)
Query: 29 VIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ 88
+I+ K + T P+IV YN ++N + +++ A+ +++++ ++G
Sbjct: 170 LINGFVGASKFEDATRVFREMGTHCSPNIVTYNTLINGLCKGERFGEAYDLVKEMLEKGW 229
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSY------------------------- 122
KP +TY L+M+ + K ++ + +V K +
Sbjct: 230 KPGVSTYSLLMKGLCLGHKLDMAINLWNQVIAKGFKPDVQMHNILIHGLCSVGKTQLALS 289
Query: 123 ----------IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
PN + Y L+ +++G A++ + R G+ Y + LC
Sbjct: 290 LYFNMNXWNCAPNLVTYNTLMEGFYKDGDLRNALAIWAHILRNGLQPDIISYNITLKGLC 349
Query: 173 SAGKCEEALM 182
S + A++
Sbjct: 350 SCNRISGAIL 359
>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 665
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 89/363 (24%), Positives = 139/363 (38%), Gaps = 71/363 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y ++ ++ + G ++E ++ R +P++ VYNA++
Sbjct: 217 PDVVSYTTVISSMSKLGKVEEAREL--------------------SIRFQPNVSVYNALI 256
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL-------------- 110
N R + + F +L Q+ ++G P+ TY V+ + G L
Sbjct: 257 NGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCS 316
Query: 111 --VYEFF--------------------RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSA 148
VY F R ++ + PN +AY L++ L GK EAVS
Sbjct: 317 PNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSV 376
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
MER G + + Y L AG A +K+ P VV YT ++
Sbjct: 377 SSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCR 436
Query: 209 SGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
S A + +M + C PN VT N +K G E A+ LF +M +
Sbjct: 437 SSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCS----- 491
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDD-LELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
P+I T+N +LD E R + LELV M G+ N + + G
Sbjct: 492 -------PNIKTYNEVLDGLLKENRIKEALELV-TEMEEKGMELNLVTYNTIFGGFCNVG 543
Query: 327 KVE 329
K E
Sbjct: 544 KFE 546
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 112/267 (41%), Gaps = 17/267 (6%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP++ YN +L A + + +GA +L ++ +G +P +Y V+ M GK E
Sbjct: 181 EPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGK----VE 236
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
R++ + PN Y L+N RE K E + M +GI + Y + L
Sbjct: 237 EARELSIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSG 296
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G E AL K+ P V ++T L++ G + A I+N+M + PN+V
Sbjct: 297 IGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVA 356
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ HG EA+ + +M + P++ T+ ++D A
Sbjct: 357 YNTLIHGLCSHGKMGEAVSVSSKMERNGCS------------PNVSTYGALIDGFAKAGD 404
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMI 319
++ +M+ +G N + M+
Sbjct: 405 LVGASEIWNKMMTNGCIPNVVVYTSMV 431
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 83/375 (22%), Positives = 144/375 (38%), Gaps = 50/375 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDV------------IDSMRSLPKKKFKTG----TLER 48
P+ + Y ++ +L G+++ V + + SL K F G L
Sbjct: 282 PNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNI 341
Query: 49 W----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
W + EP++V YN +++ + A V ++++ G P+ +TYG +++
Sbjct: 342 WNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAK 401
Query: 105 CGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G E + K+ IPN + Y +VN L R +A S +E M +
Sbjct: 402 AGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVT 461
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ + LC +G+ E A+ ++ + P + +Y ++ L I+ A + +M+
Sbjct: 462 FNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEME 521
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
NLVT N + + G FEEA+KL +M G V PD T+NT
Sbjct: 522 EKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKML------------VGGVKPDAITYNT 569
Query: 283 ----------------MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+LD +A +W Y +L + + LD
Sbjct: 570 LTYAYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNE 629
Query: 327 KVELLEITWEHLARA 341
+ L TW L R
Sbjct: 630 GICLNAATWNALVRG 644
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/287 (19%), Positives = 134/287 (46%), Gaps = 19/287 (6%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+P + +YN +L+A + +++ + +K+ G++P+ TY ++++ + + + +
Sbjct: 146 QPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACK 205
Query: 114 FFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++ K P+ ++Y +++++ + GK +EA ++ R + ++Y L C
Sbjct: 206 LLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEA----RELSIR-FQPNVSVYNALINGFC 260
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
K +E + + ++ + P V++Y+ +I + GN++ A ++ +M CSPN+
Sbjct: 261 REYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVY 320
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T ++K Y G EA+ ++ MAE+ P++ +NT++ +
Sbjct: 321 TFTSLMKGYFMRGRVLEALNIWNRMAEEGFE------------PNVVAYNTLIHGLCSHG 368
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
+ + V +M +G N + +I ++AG + W +
Sbjct: 369 KMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKM 415
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 17/169 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y + L + IKE +++ M + +E ++V YN +
Sbjct: 492 PNIKTYNEVLDGLLKENRIKEALELVTEME---------------EKGMELNLVTYNTIF 536
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS--Y 122
++E A +L ++ G KP A TY + GK + K+ +
Sbjct: 537 GGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKW 596
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+P AY L+ + + +EAV ++ M GI +AA + L R L
Sbjct: 597 VPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGICLNAATWNALVRGL 645
Score = 44.7 bits (104), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 56/285 (19%), Positives = 114/285 (40%), Gaps = 19/285 (6%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
+ Y ++ R +G ++LQQ+K +G S + V+ G + F +
Sbjct: 80 LTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMFYR 139
Query: 118 VQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
+++ P Y L++ + E + +M+R G + Y L + LC +
Sbjct: 140 IREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNR 199
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIM 236
+ A + ++ +P VVSYT +I + G ++ A + + + PN+ N +
Sbjct: 200 VDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSIRFQ----PNVSVYNAL 255
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ + +E L +M E KG + P++ T++T++ + + +
Sbjct: 256 INGFCREYKVKEVFLLLGQMVE-----------KG-IDPNVITYSTVISSLSGIGNVELA 303
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLAR 340
V+ +M G N ++ G+V E L I W +A
Sbjct: 304 LAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNI-WNRMAE 347
>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
Length = 583
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 133/296 (44%), Gaps = 14/296 (4%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D+ +Y AV+NA R A VL + G +P+ TYG+++ G+
Sbjct: 281 DVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLL 340
Query: 116 RKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+Q + N + + +++ R+G D+A+ ME+ G+ Y LA LC
Sbjct: 341 ADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRV 400
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTC 233
+ +EA + + ++ P V+YT LI G++ A +F +M + +P++VT
Sbjct: 401 NRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTY 460
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N+M+ Y + G EA + +EM +KKG V PD+YT+ +++ +
Sbjct: 461 NVMIDGYTKKGSIREAERFRKEM-----------EKKGFV-PDVYTYASLVHGHCVNGKV 508
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPAL 349
D +++ M G N + +I ++ G+ E ++ + +A I +L
Sbjct: 509 DVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSL 564
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 1/171 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+E DI YN + R + + A +L + + G P+ TY ++ + G
Sbjct: 383 VELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEAR 442
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
FR++ +K P+ + Y V+++ ++G EA ++ME++G V Y L
Sbjct: 443 RLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGH 502
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
C GK + AL +++ + +P VV+YT LI G + A +++ M
Sbjct: 503 CVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDM 553
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P +V YN +++ ++ A ++++++G P TY ++ GK ++ +
Sbjct: 455 PSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKL 514
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F ++ Q+ PN +AY L++ L +EG+++ A +DM + G++ +LY L L
Sbjct: 515 FEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSL 572
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 1/150 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ V Y +++ + A + +++ ++G PS TY ++++ G F
Sbjct: 420 PNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERF 479
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++++K ++P+ Y LV+ GK D A+ E+M++RG + Y L L
Sbjct: 480 RKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAK 539
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLI 203
G+ E A D + K P Y+ L+
Sbjct: 540 EGRSEAAFQLYDDMLKAGLIPDDSLYSALV 569
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 78/350 (22%), Positives = 135/350 (38%), Gaps = 86/350 (24%)
Query: 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC---SAGKCEEALMQ 183
LA V+V+ L + G+ D+A ++DM R G+ +A Y L C G+ +E L
Sbjct: 178 LAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEI 237
Query: 184 MDK----------------------ICKV--------ANKPL--VVSYTGLIQACLDSGN 211
M+ I KV AN + V YT +I A +GN
Sbjct: 238 MENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGN 297
Query: 212 IQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR----- 265
++ AA + ++ + N PN T +++ + + G E A L +M +N+
Sbjct: 298 MRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNT 357
Query: 266 ---EYDKKGLVIP---------------DIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
Y +KG+V DIYT+NT+ R D+ + + M+ G
Sbjct: 358 MIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMG 417
Query: 308 LHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIK---------------- 351
+ N + +I + G +++E A++ P+++
Sbjct: 418 VVPNYVTYTTLISIHCKDG--DMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIRE 475
Query: 352 -ERFCNRLENKDYGSAI----SCLVSHPVSGSPEFSRNAWLKFFKENSQH 396
ERF +E K + + S + H V+G + + LK F+E Q
Sbjct: 476 AERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVA----LKLFEEMKQR 521
>gi|449489553|ref|XP_004158346.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g55840-like [Cucumis sativus]
Length = 1079
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 138/326 (42%), Gaps = 49/326 (15%)
Query: 41 FKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
F G L P + V++ ++ +R+ A + +G KPS T ++M
Sbjct: 89 FLFGVLMDTYPLCSSNPAVFDLLIRVYLRQGMVGHAVNTFSSMLIRGFKPSVYTCNMIMA 148
Query: 101 VMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
M+ + +LV+ FF+++ S + PN ++ +L++ L +GK +AV+ + MER G V
Sbjct: 149 SMVKNCRAHLVWXFFKQMLTSRVCPNVSSFNILISVLCVQGKLKKAVNILTMMERNGYVP 208
Query: 160 SAALYYDLARCLCSAGKCEEAL-------------------MQMDKIC------------ 188
+ Y L C G+ + AL M +D +C
Sbjct: 209 TIVSYNTLLSWCCKKGRFKFALVLIHHMECKGIQADVCTYNMFIDSLCRNSRSAQGYLVL 268
Query: 189 -KVANK---PLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
K+ NK P VSY LI + G I A +FN+M SPNL+T NI++ Y +
Sbjct: 269 KKMRNKMITPNEVSYNTLINGFVKEGKIGVATRVFNEMIELNLSPNLITYNILINGYCIN 328
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G FEEA++L M + V P+ T T+L+ ++D + +R
Sbjct: 329 GNFEEALRLLDVMEAND------------VRPNEVTIGTLLNGLYKSAKFDVARNILERY 376
Query: 304 LHHGLHFNAKRHLRMILDASRAGKVE 329
+ N H MI R G ++
Sbjct: 377 SINRTSLNCISHTVMIDGLCRNGLLD 402
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 117/276 (42%), Gaps = 14/276 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P IV YN +L+ C ++ +++ A ++ ++ +G + TY + ++ + + Y
Sbjct: 208 PTIVSYNTLLSWCCKKGRFKFALVLIHHMECKGIQADVCTYNMFIDSLCRNSRSAQGYLV 267
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+K++ I PN ++Y L+N +EGK A +M + + Y L C
Sbjct: 268 LKKMRNKMITPNEVSYNTLINGFVKEGKIGVATRVFNEMIELNLSPNLITYNILINGYCI 327
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVT 232
G EEAL +D + +P V+ L+ S A I + N S N ++
Sbjct: 328 NGNFEEALRLLDVMEANDVRPNEVTIGTLLNGLYKSAKFDVARNILERYSINRTSLNCIS 387
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+M+ +GL +EA +L EM +D V PDI TF+ +++
Sbjct: 388 HTVMIDGLCRNGLLDEAFQLLIEMCKDG------------VYPDIITFSVLINGFCKVGN 435
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+ + V ++ G N +I ++ + G V
Sbjct: 436 LNKAKEVMSKIYREGFVPNNVIFSTLIYNSCKVGNV 471
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 116/266 (43%), Gaps = 16/266 (6%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + L P+++ YN ++N +E A +L ++ +P+ T G ++ +
Sbjct: 305 EMIELNLSPNLITYNILINGYCINGNFEEALRLLDVMEANDVRPNEVTIGTLLNGLYKSA 364
Query: 107 KYNLVYEFFRK--VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
K+++ + + ++ + N +++ V+++ L R G DEA + +M + G+ +
Sbjct: 365 KFDVARNILERYSINRTSL-NCISHTVMIDGLCRNGLLDEAFQLLIEMCKDGVYPDIITF 423
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK- 223
L C G +A M KI + P V ++ LI GN+ + M
Sbjct: 424 SVLINGFCKVGNLNKAKEVMSKIYREGFVPNNVIFSTLIYNSCKVGNVYEGMKFYAAMNL 483
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
N + + TCN +V + E+G EA E +HI+R GLV P+ TF+ +
Sbjct: 484 NGQNADNFTCNSLVASLCENGKLVEA-------EEFLHHISR----IGLV-PNSVTFDCI 531
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLH 309
++ A V+ +M+ G H
Sbjct: 532 INGYANVGDGSGAFSVFDKMISCGHH 557
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/318 (19%), Positives = 123/318 (38%), Gaps = 41/318 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPK--KKFKTGTLER--------WDPR-- 52
P++V + I G F V D M S F G+L + W+ R
Sbjct: 523 PNSVTFDCIINGYANVGDGSGAFSVFDKMISCGHHPSPFTYGSLLKVLCKGQNFWEARKL 582
Query: 53 --------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L D + YN ++ + A + +++ Q P + TY ++ ++
Sbjct: 583 LKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVRLFEEMIQNNILPDSYTYTCILSGLIR 642
Query: 105 CGKYNLVYEFF-RKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G+ + F R +QK + N++ Y ++ L++ G++ A+ ++ME +G+
Sbjct: 643 EGRLVCAFIFLGRLMQKEILTLNSIVYTCFIDGLFKAGQSKAALYLFKEMEEKGLSLDLI 702
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANK---PLVVSYTGLIQACLDSGNIQNAAYIF 219
+ GK A I K NK P + ++ L+ +I + ++
Sbjct: 703 ALNSITDGYSRMGKVFSA---SSLISKTRNKNVIPNLTTFNILLHGYSRGQDIMSCFKLY 759
Query: 220 NQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
N M+ + PN +T + ++ HG+ E +K+ + +S+ I D
Sbjct: 760 NLMRRSGFFPNRLTYHSLILGLCNHGMLELGIKMLKMFIAESSTI------------DDL 807
Query: 279 TFNTMLDACAAEKRWDDL 296
TFN ++ C D +
Sbjct: 808 TFNMLIRKCCEINDLDKV 825
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 87/416 (20%), Positives = 152/416 (36%), Gaps = 84/416 (20%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD + + + + G++ + +V+ K ++ G + P+ V+++ +
Sbjct: 417 YPDIITFSVLINGFCKVGNLNKAKEVMS-------KIYREGFV--------PNNVIFSTL 461
Query: 64 L-NACVRRKQWEGA-FWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK- 120
+ N+C +EG F+ L GQ T ++ + GK EF + +
Sbjct: 462 IYNSCKVGNVYEGMKFYAAMNL--NGQNADNFTCNSLVASLCENGKLVEAEEFLHHISRI 519
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+PN++ + ++N G A S + M G S Y L + LC EA
Sbjct: 520 GLVPNSVTFDCIINGYANVGDGSGAFSVFDKMISCGHHPSPFTYGSLLKVLCKGQNFWEA 579
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN---------- 229
+ K+ + +SY LI SGN+ A +F +M +N P+
Sbjct: 580 RKLLKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVRLFEEMIQNNILPDSYTYTCILSG 639
Query: 230 ---------------------LVTCNIMVKAYLEHGLF-----EEAMKLFQEMAEDS--- 260
++T N +V GLF + A+ LF+EM E
Sbjct: 640 LIREGRLVCAFIFLGRLMQKEILTLNSIVYTCFIDGLFKAGQSKAALYLFKEMEEKGLSL 699
Query: 261 -----NHINREYDKKGL---------------VIPDIYTFNTMLDACAAEKRWDDLELVY 300
N I Y + G VIP++ TFN +L + + +Y
Sbjct: 700 DLIALNSITDGYSRMGKVFSASSLISKTRNKNVIPNLTTFNILLHGYSRGQDIMSCFKLY 759
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVEL----LEITWEHLARADRITPPALIKE 352
M G N + +IL G +EL L++ + D +T LI++
Sbjct: 760 NLMRRSGFFPNRLTYHSLILGLCNHGMLELGIKMLKMFIAESSTIDDLTFNMLIRK 815
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 85/192 (44%), Gaps = 13/192 (6%)
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
++K +IP + Y ++ + R G A + M GI A + R L GK
Sbjct: 868 LKKGFIPTSKQYCTMMKRMCRVGDIQGAFKLKDQMVALGISLDDAAECAMVRGLALCGKI 927
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIM 236
EEA+ + ++ ++ P ++T L+ N + A + M+++ ++V N++
Sbjct: 928 EEAMWILQRMLRMKKIPTTSTFTTLMHVFCKKDNFKEAHNLKILMEHYRVKLDIVAYNVL 987
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ A +G A+ ++E+ + KGL +P++ T+ ++ A + +
Sbjct: 988 ISACCANGDVITALDFYEEIKQ-----------KGL-LPNMTTYRVLVSAISTKHYVSRG 1035
Query: 297 ELVYKRMLHHGL 308
E+V K + GL
Sbjct: 1036 EIVLKDLNDRGL 1047
>gi|449446855|ref|XP_004141186.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g55840-like [Cucumis sativus]
Length = 1079
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 92/357 (25%), Positives = 151/357 (42%), Gaps = 56/357 (15%)
Query: 41 FKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
F G L P + V++ ++ +R+ A + +G KPS T ++M
Sbjct: 89 FLFGVLMDTYPLCSSNPAVFDLLIRVYLRQGMVGHAVNTFSSMLIRGFKPSVYTCNMIMA 148
Query: 101 VMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
M+ + +LV+ FF+++ S + PN ++ +L++ L +GK +AV+ + MER G V
Sbjct: 149 SMVKNCRAHLVWSFFKQMLTSRVCPNVSSFNILISVLCVQGKLKKAVNILTMMERNGYVP 208
Query: 160 SAALYYDLARCLCSAGKCEEAL-------------------MQMDKIC------------ 188
+ Y L C G+ + AL M +D +C
Sbjct: 209 TIVSYNTLLSWCCKKGRFKFALVLIHHMECKGIQADVCTYNMFIDSLCRNSRSAQGYLVL 268
Query: 189 -KVANK---PLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
K+ NK P VSY LI + G I A +FN+M SPNL+T NI++ Y +
Sbjct: 269 KKMRNKMITPNEVSYNTLINGFVKEGKIGVATRVFNEMIELNLSPNLITYNILINGYCIN 328
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G FEEA+++ M + V P+ T T+L+ ++D + +R
Sbjct: 329 GNFEEALRVLDVMEAND------------VRPNEVTIGTLLNGLYKSAKFDVARNILERY 376
Query: 304 LHHGLHFNAKRHLRMILDASRAGKVE-----LLEITWEHLARADRITPPALIKERFC 355
+ N H MI R G ++ L+E+ + + D IT LI FC
Sbjct: 377 CINRTSLNCISHTVMIDGLCRNGLLDEAFQLLIEMCKDGV-HPDIITFSVLING-FC 431
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 117/266 (43%), Gaps = 16/266 (6%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + L P+++ YN ++N +E A VL ++ +P+ T G ++ +
Sbjct: 305 EMIELNLSPNLITYNILINGYCINGNFEEALRVLDVMEANDVRPNEVTIGTLLNGLYKSA 364
Query: 107 KYNLVYEFFRK--VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
K+++ + + ++ + N +++ V+++ L R G DEA + +M + G+ +
Sbjct: 365 KFDVARNILERYCINRTSL-NCISHTVMIDGLCRNGLLDEAFQLLIEMCKDGVHPDIITF 423
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK- 223
L C G +A M KI + P V ++ LI GN+ A + M
Sbjct: 424 SVLINGFCKVGNINKAKEVMSKIYREGFVPNNVIFSTLIYNSCKVGNVYEAMKFYAAMNL 483
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
N + + TCN +V + E+G EA E +HI+R GLV P+ TF+ +
Sbjct: 484 NGQNADNFTCNSLVASLCENGKLVEA-------EEFLHHISR----IGLV-PNSVTFDCI 531
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLH 309
++ A V+ RM+ G H
Sbjct: 532 INGYANVGDGSGAFSVFDRMISCGHH 557
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/318 (19%), Positives = 123/318 (38%), Gaps = 41/318 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPK--KKFKTGTLER--------WDPR-- 52
P++V + I G F V D M S F G+L + W+ R
Sbjct: 523 PNSVTFDCIINGYANVGDGSGAFSVFDRMISCGHHPSPFTYGSLLKVLCKGQNFWEARKL 582
Query: 53 --------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L D + YN ++ + A + +++ Q P + TY ++ ++
Sbjct: 583 LKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVRLFEEMIQNNILPDSYTYTCILSGLIR 642
Query: 105 CGKYNLVYEFF-RKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G+ + F R +QK + N++ Y ++ L++ G++ A+ ++ME +G+
Sbjct: 643 EGRLVCAFIFLGRLMQKEILTLNSIVYTCFIDGLFKAGQSKAALYLFKEMEEKGLSLDLI 702
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANK---PLVVSYTGLIQACLDSGNIQNAAYIF 219
+ GK A I K NK P + ++ L+ +I + ++
Sbjct: 703 ALNSITDGYSRMGKVFSA---SSLISKTRNKNVIPNLTTFNILLHGYSRGQDIMSCFKLY 759
Query: 220 NQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
N M+ + PN +T + ++ HG+ E +K+ + +S+ I D
Sbjct: 760 NLMRRSGFFPNRLTYHSLILGLCNHGMLELGIKMLKMFIAESSTI------------DDL 807
Query: 279 TFNTMLDACAAEKRWDDL 296
TFN ++ C D +
Sbjct: 808 TFNMLIRKCCEINDLDKV 825
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 85/192 (44%), Gaps = 13/192 (6%)
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
++K +IP + Y ++ + R G A + M GI A + R L GK
Sbjct: 868 LKKGFIPTSKQYCTMMKRMCRVGDIQGAFKLKDQMVALGISLDDAAECAMVRGLALCGKI 927
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIM 236
EEA+ + ++ ++ P ++T L+ N + A + M+++ ++V N++
Sbjct: 928 EEAMWILQRMLRMKKIPTTSTFTTLMHVFCKKDNFKEAHNLKILMEHYRVKLDIVAYNVL 987
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ A +G A+ ++E+ + KGL +P++ T+ ++ A + +
Sbjct: 988 ISACCANGDVITALDFYEEIKQ-----------KGL-LPNMTTYRVLVSAISTKHYVSRG 1035
Query: 297 ELVYKRMLHHGL 308
E+V K + GL
Sbjct: 1036 EIVLKDLNDRGL 1047
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 85/415 (20%), Positives = 150/415 (36%), Gaps = 82/415 (19%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD + + + + G+I + +V+ K ++ G + P+ V+++ +
Sbjct: 417 HPDIITFSVLINGFCKVGNINKAKEVMS-------KIYREGFV--------PNNVIFSTL 461
Query: 64 L-NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-S 121
+ N+C +E A + GQ T ++ + GK EF + +
Sbjct: 462 IYNSCKVGNVYE-AMKFYAAMNLNGQNADNFTCNSLVASLCENGKLVEAEEFLHHISRIG 520
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+PN++ + ++N G A S + M G S Y L + LC EA
Sbjct: 521 LVPNSVTFDCIINGYANVGDGSGAFSVFDRMISCGHHPSPFTYGSLLKVLCKGQNFWEAR 580
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN----------- 229
+ K+ + +SY LI SGN+ A +F +M +N P+
Sbjct: 581 KLLKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVRLFEEMIQNNILPDSYTYTCILSGL 640
Query: 230 --------------------LVTCNIMVKAYLEHGLF-----EEAMKLFQEMAEDS---- 260
++T N +V GLF + A+ LF+EM E
Sbjct: 641 IREGRLVCAFIFLGRLMQKEILTLNSIVYTCFIDGLFKAGQSKAALYLFKEMEEKGLSLD 700
Query: 261 ----NHINREYDKKGL---------------VIPDIYTFNTMLDACAAEKRWDDLELVYK 301
N I Y + G VIP++ TFN +L + + +Y
Sbjct: 701 LIALNSITDGYSRMGKVFSASSLISKTRNKNVIPNLTTFNILLHGYSRGQDIMSCFKLYN 760
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVEL----LEITWEHLARADRITPPALIKE 352
M G N + +IL G +EL L++ + D +T LI++
Sbjct: 761 LMRRSGFFPNRLTYHSLILGLCNHGMLELGIKMLKMFIAESSTIDDLTFNMLIRK 815
>gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
Length = 448
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 134/302 (44%), Gaps = 23/302 (7%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
Y D+ A ++ L + G ++ D +RSLP D+ Y +
Sbjct: 29 YLDSRALAALLKELHKVGLSNRASELFDWLRSLPDNHELAHLC---------DVYTYTTI 79
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSY 122
++ C +Q A ++ +++ G + TY +M V + + L + + ++ ++
Sbjct: 80 ISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVYGQLLREGC 139
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN + Y +L++ + G EAV ++ +E +G Y + +G+ E AL
Sbjct: 140 TPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALR 199
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+++ +P +YT LI A +G I+ A IF M + C N++T + ++ A
Sbjct: 200 VYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACE 259
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G ++ A++L EM D+ P+ TFN +L ACA +W + V++
Sbjct: 260 KAGRWQLALELLDEMHRDN------------CKPNTVTFNALLSACAQGGQWKAAQDVFE 307
Query: 302 RM 303
+M
Sbjct: 308 QM 309
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 106/234 (45%), Gaps = 14/234 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V YN +++ + W+ A VL L+ QG KP TY ++ G+
Sbjct: 141 PNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALRV 200
Query: 115 F-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ R + P A Y L++ + GK +EA+ +DM RRG + Y L
Sbjct: 201 YERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACEK 260
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
AG+ + AL +D++ + KP V++ L+ AC G + A +F QM + C P+ V+
Sbjct: 261 AGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMPSCGCKPDAVS 320
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
I++ A+ + A++ EM + PD+ +N +++A
Sbjct: 321 YAILISAFDRGNQWCRALQALDEMQGQGHR------------PDVGVYNVVIEA 362
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 69/135 (51%), Gaps = 13/135 (9%)
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
V +Y+ L+ C+ + ++ A ++ Q+ + C+PNLVT NI++ + + G ++EA+++
Sbjct: 108 VHTYSALMNVCIKANELELALDVYGQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLD 167
Query: 255 EMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKR 314
+ + P++ T+NT+L AC + + VY+RML G A
Sbjct: 168 ALEDQGTK------------PEVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTATT 215
Query: 315 HLRMILDASRAGKVE 329
+ +I + GK+E
Sbjct: 216 YTALISAYGKTGKIE 230
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 40/211 (18%), Positives = 87/211 (41%), Gaps = 13/211 (6%)
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+++ + Y +++ + +A+ V +M G+V + Y L A + E A
Sbjct: 68 AHLCDVYTYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELA 127
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKA 239
L ++ + P +V+Y LI GN Q A + + +++ P + T N ++ A
Sbjct: 128 LDVYGQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSA 187
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
G E A+++++ M D P T+ ++ A + ++ +
Sbjct: 188 CNRSGQPEHALRVYERMLADGAQ------------PTATTYTALISAYGKTGKIEEALRI 235
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
++ M+ G N + +I +AG+ +L
Sbjct: 236 FQDMVRRGCERNVITYSSLISACEKAGRWQL 266
>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
Length = 724
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 151/355 (42%), Gaps = 40/355 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+++ Y+++ L + + E +++ M F G PD+ +N V+
Sbjct: 243 PNSMIYQTLIDALSKRDRVDEALKLLEEM-------FLMGC--------PPDVNTFNTVI 287
Query: 65 NA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
C + EGA V ++ +G P+ TYG +M + + + KV
Sbjct: 288 YGFCRLNRVLEGAKLV-DRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPG--- 343
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVED-MERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN + + LVN R G+ +EA + V D M G V + L LC G AL
Sbjct: 344 PNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALE 403
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAY 240
++ + KP + +YT LI G ++ A I +M K F S N V N ++ A
Sbjct: 404 LVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGF-SLNTVGYNALISAL 462
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+HG EA+ +F EM+ PDI+TFN+++ +D +Y
Sbjct: 463 CKHGKIHEALDMFGEMSSKGCK------------PDIFTFNSLIFGLCRVDEMEDALALY 510
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARA---DRITPPALIK 351
+ M+ G+ N+ +I R G++ E L++ + L R D IT LIK
Sbjct: 511 RDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIK 565
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 114/256 (44%), Gaps = 16/256 (6%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
+ V YNA+++A + + A + ++ +G KP T+ ++ + + +
Sbjct: 451 NTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALY 510
Query: 116 RK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
R V + I N++ + L++ R G+ EA+ V DM RG Y L + LC
Sbjct: 511 RDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKT 570
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVT 232
G E+ L +++ + P +++ LI +G + NA M + F SP++VT
Sbjct: 571 GAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGF-SPDIVT 629
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ + G +EA+ LF+++ + + PD T+NT++ E
Sbjct: 630 YNSLINGLCKRGRIQEALNLFEKLQAEG------------IQPDSITYNTLICWLCREGA 677
Query: 293 WDDLELVYKRMLHHGL 308
+DD + R + +G
Sbjct: 678 FDDACFLLYRGVENGF 693
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/315 (19%), Positives = 144/315 (45%), Gaps = 18/315 (5%)
Query: 21 GHIKELFDVIDSMRSLPKKKFKTGTLERWDPR----LEPDIVVYNAVLNACVRRKQWEGA 76
G++ ++F + L KK LE + +P++ Y +++ ++ Q E A
Sbjct: 377 GYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEA 436
Query: 77 FWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNT 135
+L+++ +G + Y ++ + GK + + F ++ K P+ + L+
Sbjct: 437 GLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFG 496
Query: 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL 195
L R + ++A++ DM G++ ++ + L G+ +EAL ++ +
Sbjct: 497 LCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLD 556
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
++Y GLI+A +G ++ +F +M + +P+++TCNI++ + G A++ +
Sbjct: 557 EITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMR 616
Query: 255 EMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKR 314
+M I+R + PDI T+N++++ R + +++++ G+ ++
Sbjct: 617 DM------IHRGFS------PDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSIT 664
Query: 315 HLRMILDASRAGKVE 329
+ +I R G +
Sbjct: 665 YNTLICWLCREGAFD 679
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 137/323 (42%), Gaps = 31/323 (9%)
Query: 55 PDIVVYNAVLNACVRRKQW-EGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
P++V +N ++N VR + E +V ++ G P T+ ++ + G + E
Sbjct: 344 PNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALE 403
Query: 114 FFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ K PN Y +L++ ++G+ +EA + +M +G + Y L LC
Sbjct: 404 LVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALC 463
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLV 231
GK EAL ++ KP + ++ LI +++A ++ M N V
Sbjct: 464 KHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSV 523
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEM------------------------AEDSNHINREY 267
T N ++ A+L G +EA+KL +M E + E
Sbjct: 524 TFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEM 583
Query: 268 DKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+KGL P I T N +++ C A K + LE + + M+H G + + +I + G
Sbjct: 584 IRKGLT-PSIITCNILINGFCTAGKVHNALEFM-RDMIHRGFSPDIVTYNSLINGLCKRG 641
Query: 327 KVELLEITWEHLARADRITPPAL 349
+++ +E L +A+ I P ++
Sbjct: 642 RIQEALNLFEKL-QAEGIQPDSI 663
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 137/327 (41%), Gaps = 55/327 (16%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP YN VL+ V A V + +G P+ T+GLVM+ + + +
Sbjct: 172 EPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACL 231
Query: 114 FFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDM-------------------- 152
R + K +PN++ Y+ L++ L + + DEA+ +E+M
Sbjct: 232 LLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFC 291
Query: 153 ------------ER---RGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV 197
+R +G + Y L LC + +EA + K+ P VV
Sbjct: 292 RLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKV----PGPNVV 347
Query: 198 SYTGLIQACLDSGNIQNA-AYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
+ L+ + +G + A A+++++M N P++ T + +V + GLF A++L +
Sbjct: 348 HFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVND 407
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
M D KG P++ T+ ++D + + ++ L+ + ML G N +
Sbjct: 408 M-----------DAKG-CKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGY 455
Query: 316 LRMILDASRAGKV-ELLEITWEHLARA 341
+I + GK+ E L++ E ++
Sbjct: 456 NALISALCKHGKIHEALDMFGEMSSKG 482
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLV 111
PDIV YN+++N +R + + A + ++L+ +G +P + TY ++ + G + +
Sbjct: 623 FSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDAC 682
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTD 143
+ +R V+ ++PN + + +LV ++ ++
Sbjct: 683 FLLYRGVENGFVPNDVTWNILVYNFGKQSNSE 714
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 21/161 (13%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPRL 53
++V + ++ + G I+E +++ M L K KTG +E+
Sbjct: 521 NSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLF 580
Query: 54 E--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
E P I+ N ++N + A ++ + +G P TY ++ +
Sbjct: 581 EEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKR 640
Query: 106 GKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEA 145
G+ F K+Q I P+++ Y L+ L REG D+A
Sbjct: 641 GRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDA 681
>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
Length = 504
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 74/334 (22%), Positives = 140/334 (41%), Gaps = 35/334 (10%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P+ V Y ++ L + H+ ++ + M D + P++V Y
Sbjct: 181 MGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQM---------------GDNGIRPNVVTY 225
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQ 119
N++++ +W A W+L+ + ++G +P+ T+ +++ + GK E ++ +Q
Sbjct: 226 NSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQ 285
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
S P+ Y L+N L G+ DEA ME G + Y L C + + E+
Sbjct: 286 MSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVED 345
Query: 180 A---LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNI 235
+M + VAN ++YT LIQ G A +FNQM + P++ T N+
Sbjct: 346 GTKIFYEMSQKGLVAN---TITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNV 402
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
++ +G E+A+ +F+ M + IN I T+ ++ + +D
Sbjct: 403 LLDGLCYNGYVEKALMIFKYMRKREMDIN------------IVTYTIIIQGMCKVGKVED 450
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++ + G+ N + MI R G +
Sbjct: 451 AFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIH 484
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 125/302 (41%), Gaps = 25/302 (8%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
EPD+V + ++L+ + E A + Q+ G +P+ TY ++ + N
Sbjct: 148 FEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAV 207
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F ++ + I PN + Y LV+ L G+ +A + DM +RGI + + L
Sbjct: 208 EIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAF 267
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
GK EA + +++ P V +YT LI G + A +F M+ N PN
Sbjct: 268 VKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNE 327
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAED---SNHINREYDKKGLVI------------- 274
VT ++ + + E+ K+F EM++ +N I +G +
Sbjct: 328 VTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQ 387
Query: 275 -------PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
PDI T+N +LD + +++K M + N + +I + GK
Sbjct: 388 MGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGK 447
Query: 328 VE 329
VE
Sbjct: 448 VE 449
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 120/272 (44%), Gaps = 14/272 (5%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
Y +L + Q+ A + ++ PS + ++ V+ ++++V F ++Q
Sbjct: 50 YRKILRNGLHNLQFNEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQ 109
Query: 120 KSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
I P +++N + R + A + M + G + L C + E
Sbjct: 110 ILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIE 169
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMV 237
+AL D+I + +P VV+YT LI + ++ +A IFNQM N PN+VT N +V
Sbjct: 170 DALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLV 229
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
E G + +A L ++M K+G + P++ TF ++DA + + +
Sbjct: 230 SGLCEIGRWSDAAWLLRDMM-----------KRG-IQPNVITFTALIDAFVKVGKIMEAK 277
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+YK M+ ++ + + +I G+++
Sbjct: 278 ELYKVMIQMSVYPDVFTYTALINGLCTYGRLD 309
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 99/227 (43%), Gaps = 22/227 (9%)
Query: 1 MSSYPDTVAYRSIA---VTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDI 57
MS YPD Y ++ T G+ +++F +++S P +
Sbjct: 286 MSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNE------------------ 327
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
V Y +++ + K+ E + ++ Q+G + TY ++++ G+ ++ E F +
Sbjct: 328 VTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQ 387
Query: 118 V-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
+ + P+ Y VL++ L G ++A+ + M +R + + Y + + +C GK
Sbjct: 388 MGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGK 447
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
E+A + KP V++YT +I G I A +F +MK
Sbjct: 448 VEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMK 494
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R PDI YN +L+ E A + + ++++ + TY ++++ M GK
Sbjct: 392 RAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDA 451
Query: 112 YEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
++ F + K PN + Y +++ R G EA + + M+ G +
Sbjct: 452 FDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFL 499
>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 680
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 132/297 (44%), Gaps = 30/297 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y + + ++ E +V+D MR+ K T P+IV YN ++
Sbjct: 185 PSVVTYTVLLEAVCKSSGFGEAMNVLDEMRA------KGCT---------PNIVTYNVII 229
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N R + + A +L +L G +P +Y V++ + A +++ V F + V K +
Sbjct: 230 NGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCV 289
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + +LV R G + A+ ++ M + G + L + +C G+ ++A
Sbjct: 290 PNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDF 349
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + P +SYT +++ +G ++A + +M + C PN VT N + +
Sbjct: 350 LNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQ 409
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD-LEL 298
GL E+A+KL + M E + I T+N ++ + R D LEL
Sbjct: 410 KGLIEQAIKLIELMPEYGCSVG------------IVTYNALVHGFCVQGRVDSALEL 454
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/355 (23%), Positives = 156/355 (43%), Gaps = 42/355 (11%)
Query: 1 MSSY---PDTVAYRSIAVTLGQA---GHIKELFDVIDSMRSLPKK-------KF--KTGT 45
+SSY PD V+Y ++ L A +K LF + + +P + +F + G
Sbjct: 248 LSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGM 307
Query: 46 LERWDPRLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGL 97
+ER L+ P+ + N V+NA ++ + + A+ L + G P +Y
Sbjct: 308 VERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTT 367
Query: 98 VMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
V+ + G++ E + V+K+ PN + + + L ++G ++A+ +E M G
Sbjct: 368 VLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYG 427
Query: 157 IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
Y L C G+ + AL + + +P ++YT L+ + + AA
Sbjct: 428 CSVGIVTYNALVHGFCVQGRVDSALELFNNL---PCEPNTITYTTLLTGLCHAERLDAAA 484
Query: 217 YIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
+ +M + C N VT N++V + + G EEAM+L +M E P
Sbjct: 485 ELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHG------------CTP 532
Query: 276 DIYTFNTMLDACAAEKRWDD-LELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++ TFNT+LD + ++ LEL++ ++ G+ + + ++ SR + E
Sbjct: 533 NLITFNTLLDGITKDCNSEEALELLHG-LVSKGVSLDTITYSSVVDVLSREDRTE 586
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 116/277 (41%), Gaps = 19/277 (6%)
Query: 85 QQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTD 143
Q+G +PS TY +++E + + +++ K PN + Y V++N + REG+ D
Sbjct: 180 QRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 239
Query: 144 EAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLI 203
+A + + G Y + + LC+A + ++ + ++ P V++ L+
Sbjct: 240 DAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLV 299
Query: 204 QACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNH 262
+ G ++ A + QM ++ C+PN CNI++ A + G ++A M +
Sbjct: 300 RFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCN 359
Query: 263 INREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA 322
PD ++ T+L RW+ + + M+ N I
Sbjct: 360 ------------PDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICIL 407
Query: 323 SRAGKVE----LLEITWEHLARADRITPPALIKERFC 355
+ G +E L+E+ E+ +T AL+ FC
Sbjct: 408 CQKGLIEQAIKLIELMPEYGCSVGIVTYNALV-HGFC 443
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/274 (19%), Positives = 109/274 (39%), Gaps = 25/274 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLE------------RWDPR 52
P+ V + + L Q G I++ +I+ M P+ G + R D
Sbjct: 395 PNEVTFNTFICILCQKGLIEQAIKLIELM---PEYGCSVGIVTYNALVHGFCVQGRVDSA 451
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
LE P+ + Y +L ++ + A +L ++ Q+ +A T+ +++
Sbjct: 452 LELFNNLPCEPNTITYTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQ 511
Query: 105 CGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G E ++ + PN + + L++ + ++ ++EA+ + + +G+
Sbjct: 512 KGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTIT 571
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y + L + EEA+ + + + +P V Y ++ A A F M
Sbjct: 572 YSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMV 631
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
N C PN T I+++ GL +EA + E+
Sbjct: 632 SNGCMPNESTYIILIEGLAHEGLLKEARYVLSEL 665
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/227 (19%), Positives = 84/227 (37%), Gaps = 55/227 (24%)
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
S M +RG S Y L +C + EA+ +D++ P +V+Y +I
Sbjct: 173 SPCSTMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGM 232
Query: 207 LDSGNIQNAAYIFNQMKNF------------------------------------CSPNL 230
G + +A I N++ ++ C PN
Sbjct: 233 CREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNE 292
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT +++V+ + G+ E A+++ Q+M++ P+ N +++A +
Sbjct: 293 VTFDMLVRFFCRGGMVERAIQVLQQMSQHG------------CTPNTTLCNIVINAICKQ 340
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEH 337
R DD M +G + + + ++ RAG+ WEH
Sbjct: 341 GRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGR-------WEH 380
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D + Y++V++ R + E A +L ++ G +P Y ++ + + + +FF
Sbjct: 568 DTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFF 627
Query: 116 R-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
V +PN Y +L+ L EG EA + ++ +G++ + L
Sbjct: 628 AYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKGVLSKSLL 676
>gi|414888269|tpg|DAA64283.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
Length = 616
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 150/349 (42%), Gaps = 33/349 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV+YR I AG++ ++ M + TG D Y ++
Sbjct: 284 PDTVSYRHIVDAFASAGNLSRAAELFSEMAA-------TGH--------TADASAYLGLM 328
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
A R A VL+Q++ G P+A TY +++++ G+++ V + FR+++ + P
Sbjct: 329 EAHTRVGATADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTAVPP 388
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ Y VL G E V DM + G+ ++ G +A +
Sbjct: 389 DTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVL 448
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEH 243
+ + + P +YTGL++A + + A FN M S P L T N + AY
Sbjct: 449 EYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARG 508
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
GLF+EA +F M+ ++ I + D +F+ +++A R DD Y M
Sbjct: 509 GLFQEAEAIFSRMSNNAG-IQKSKD----------SFDALIEAYCQGSRLDDAVKAYMEM 557
Query: 304 LHHGLHFNA-KRHLRMILDA-SRAGKVELLEITWEHLARADRITPPALI 350
FN +R L +L+A AG ++ + +E L + +T P++I
Sbjct: 558 RKS--RFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSS--VTMPSVI 602
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 95/212 (44%), Gaps = 3/212 (1%)
Query: 51 PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
P + PD+ YN +L A R + + +L + + G P +Y +++ + G +
Sbjct: 245 PSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDAFASAGNLSR 304
Query: 111 VYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
E F ++ + + +A AY L+ R G T +AV+ + M+ G +AA Y L
Sbjct: 305 AAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPTAATYRVLLD 364
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSP 228
G+ + + Q+ + + A P +Y L + D G + +F+ M K P
Sbjct: 365 LYGRQGRF-DGVRQLFREMRTAVPPDTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQP 423
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
++VTC ++ A GL +A ++ + M +
Sbjct: 424 DMVTCENVMAACGHGGLHGDAREVLEYMTREG 455
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 103/262 (39%), Gaps = 28/262 (10%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK-------YNLVY 112
Y +++ A R E A +L Q+K G P+A TY V+ AC + ++++
Sbjct: 177 YTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLA---ACARATDPPVPFDMLL 233
Query: 113 EFFRKVQK----SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
F +++ S P+ Y L+ D++ + M G+ Y +
Sbjct: 234 GLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIV 293
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCS 227
SAG A ++ + +Y GL++A G +A + QM+ + C+
Sbjct: 294 DAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCA 353
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P T +++ Y G F+ +LF+EM + V PD T+N +
Sbjct: 354 PTAATYRVLLDLYGRQGRFDGVRQLFREM-------------RTAVPPDTATYNVLFRVF 400
Query: 288 AAEKRWDDLELVYKRMLHHGLH 309
+ ++ ++ ML G+
Sbjct: 401 GDGGFFKEVVELFHDMLKTGVQ 422
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/327 (20%), Positives = 130/327 (39%), Gaps = 45/327 (13%)
Query: 15 VTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWE 74
V G A + E+ +ID + +LP + LE RL + + AV RR W+
Sbjct: 63 VPSGNARNSYEVESLIDRLSNLPPRGSIARCLETARHRLT--LQDFAAVYREFSRRGDWQ 120
Query: 75 GAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNL--VYEFFRKVQKSYIPNALAYKV 131
+ + + +++Q +P + +V+ V+ G L E F + AL+Y
Sbjct: 121 RSLRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPAES-RTALSYTS 179
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV- 190
L+ R +EA + ++ M+ G+ +AA Y + L + + + + D + +
Sbjct: 180 LIAAYARNALHEEARALLDQMKATGVAPTAATYNTV---LAACARATDPPVPFDMLLGLF 236
Query: 191 ---------ANKPLVVSYTGLI-QACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240
+ +P + +Y L+ A + S Q+ + ++ SP+ V+ +V A+
Sbjct: 237 AEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDAF 296
Query: 241 LEHGLFEEAMKLFQEMA------------------------EDSNHINREYDKKGLVIPD 276
G A +LF EMA D+ + R+ G P
Sbjct: 297 ASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCA-PT 355
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRM 303
T+ +LD + R+D + +++ M
Sbjct: 356 AATYRVLLDLYGRQGRFDGVRQLFREM 382
>gi|414888270|tpg|DAA64284.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
Length = 890
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 150/349 (42%), Gaps = 33/349 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV+YR I AG++ ++ M + TG D Y ++
Sbjct: 306 PDTVSYRHIVDAFASAGNLSRAAELFSEMAA-------TGH--------TADASAYLGLM 350
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
A R A VL+Q++ G P+A TY +++++ G+++ V + FR+++ + P
Sbjct: 351 EAHTRVGATADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTAVPP 410
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ Y VL G E V DM + G+ ++ G +A +
Sbjct: 411 DTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVL 470
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEH 243
+ + + P +YTGL++A + + A FN M S P L T N + AY
Sbjct: 471 EYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARG 530
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
GLF+EA +F M+ ++ I + D +F+ +++A R DD Y M
Sbjct: 531 GLFQEAEAIFSRMSNNAG-IQKSKD----------SFDALIEAYCQGSRLDDAVKAYMEM 579
Query: 304 LHHGLHFNA-KRHLRMILDA-SRAGKVELLEITWEHLARADRITPPALI 350
FN +R L +L+A AG ++ + +E L + +T P++I
Sbjct: 580 RKS--RFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSS--VTMPSVI 624
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 95/212 (44%), Gaps = 3/212 (1%)
Query: 51 PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
P + PD+ YN +L A R + + +L + + G P +Y +++ + G +
Sbjct: 267 PSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDAFASAGNLSR 326
Query: 111 VYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
E F ++ + + +A AY L+ R G T +AV+ + M+ G +AA Y L
Sbjct: 327 AAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPTAATYRVLLD 386
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSP 228
G+ + + Q+ + + A P +Y L + D G + +F+ M K P
Sbjct: 387 LYGRQGRF-DGVRQLFREMRTAVPPDTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQP 445
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
++VTC ++ A GL +A ++ + M +
Sbjct: 446 DMVTCENVMAACGHGGLHGDAREVLEYMTREG 477
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 103/262 (39%), Gaps = 28/262 (10%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK-------YNLVY 112
Y +++ A R E A +L Q+K G P+A TY V+ AC + ++++
Sbjct: 199 YTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLA---ACARATDPPVPFDMLL 255
Query: 113 EFFRKVQK----SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
F +++ S P+ Y L+ D++ + M G+ Y +
Sbjct: 256 GLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIV 315
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCS 227
SAG A ++ + +Y GL++A G +A + QM+ + C+
Sbjct: 316 DAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCA 375
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P T +++ Y G F+ +LF+EM + V PD T+N +
Sbjct: 376 PTAATYRVLLDLYGRQGRFDGVRQLFREM-------------RTAVPPDTATYNVLFRVF 422
Query: 288 AAEKRWDDLELVYKRMLHHGLH 309
+ ++ ++ ML G+
Sbjct: 423 GDGGFFKEVVELFHDMLKTGVQ 444
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 67/327 (20%), Positives = 130/327 (39%), Gaps = 45/327 (13%)
Query: 15 VTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWE 74
V G A + E+ +ID + +LP + LE RL + + AV RR W+
Sbjct: 85 VPSGNARNSYEVESLIDRLSNLPPRGSIARCLETARHRLT--LQDFAAVYREFSRRGDWQ 142
Query: 75 GAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNL--VYEFFRKVQKSYIPNALAYKV 131
+ + + +++Q +P + +V+ V+ G L E F + AL+Y
Sbjct: 143 RSLRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPAES-RTALSYTS 201
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV- 190
L+ R +EA + ++ M+ G+ +AA Y + L + + + + D + +
Sbjct: 202 LIAAYARNALHEEARALLDQMKATGVAPTAATYNTV---LAACARATDPPVPFDMLLGLF 258
Query: 191 ---------ANKPLVVSYTGLI-QACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240
+ +P + +Y L+ A + S Q+ + ++ SP+ V+ +V A+
Sbjct: 259 AEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDAF 318
Query: 241 LEHGLFEEAMKLFQEMA------------------------EDSNHINREYDKKGLVIPD 276
G A +LF EMA D+ + R+ G P
Sbjct: 319 ASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCA-PT 377
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRM 303
T+ +LD + R+D + +++ M
Sbjct: 378 AATYRVLLDLYGRQGRFDGVRQLFREM 404
>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
Length = 700
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 133/288 (46%), Gaps = 14/288 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P V+YN ++N + + GAF + +Q+K + +P TY ++ +
Sbjct: 365 LVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAE 424
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +++KS + P+ + L++ G+ ++ + + DM+++GI + + +
Sbjct: 425 DLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAF 484
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C GK EA+ +D + P Y +I A ++SG+ + A + +MKN S ++
Sbjct: 485 CKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASI 544
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N+++K +EA +L + +GL PD+ ++NT++ AC +
Sbjct: 545 VTYNLLLKGLCRSSQIDEAEELIYTLR-----------NQGLR-PDVVSYNTIISACCNK 592
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
D + + M +G+ + ++ + AG+V +E ++ +
Sbjct: 593 GDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQM 640
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 124/306 (40%), Gaps = 29/306 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +Y + L ++G + V D M D + P+ + YN ++
Sbjct: 192 PDAFSYNVVIAGLWRSGKGSDALKVFDEM---------------VDMGVAPNRITYNTMI 236
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ V+ E F + Q+ G KP+ TY +++ + G+ + ++ S +
Sbjct: 237 DGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSML 296
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y +L + L R G++ +S + ++G++ A L LC GK +A
Sbjct: 297 PDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQV 356
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+ + P V Y LI +++ A IF QMK+ P+ +T N ++ +
Sbjct: 357 FEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCK 416
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ +A L EM +K V P + TFNT++DA + + V
Sbjct: 417 LEMVTKAEDLVMEM------------EKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSD 464
Query: 303 MLHHGL 308
M G+
Sbjct: 465 MQQKGI 470
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 102/244 (41%), Gaps = 19/244 (7%)
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY---IPN 125
R AF +L G +P + V++ +A G ++ R++ +S P+
Sbjct: 137 RHADVRAAFGLLVA---AGARPDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPD 193
Query: 126 ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMD 185
A +Y V++ LWR GK +A+ ++M G+ + Y + G E D
Sbjct: 194 AFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRD 253
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEHG 244
++ KP VV+Y L+ +G + + ++M + P+ T +I+ G
Sbjct: 254 QMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTG 313
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
+ + LF E KKG+++ YT + +L+ + + + V++ ++
Sbjct: 314 ESQTMLSLFAESL-----------KKGVML-GAYTCSILLNGLCKDGKVAKAKQVFEMLV 361
Query: 305 HHGL 308
H GL
Sbjct: 362 HTGL 365
>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 587
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 145/333 (43%), Gaps = 33/333 (9%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P AY + L G +++ ++D+M L R PD+V Y
Sbjct: 146 MPVLPSAYAYNPLMHALCVRGQVRDALVLLDNM------------LYRG---CAPDVVTY 190
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N +L A + + + A ++ ++ +G P+ TY ++M+ M G + E +
Sbjct: 191 NILLEAACKGRGYRQAMELIDLMRVEGCTPTNVTYNVIMDGMCREGDVDYARELLNSL-P 249
Query: 121 SY--IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
SY PN + Y ++ L G+ ++ + +M S A + LC G +
Sbjct: 250 SYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQ 309
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMV 237
A+ ++K+ K +V+Y ++ + G++ A Y+ + M+ + C PN+ T NI+V
Sbjct: 310 RAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILV 369
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD-ACAAEKRWDDL 296
K +E+A L +M++ +PDI TFNT++ C +
Sbjct: 370 KGLCNAERWEDAEDLMAKMSQTD------------CLPDILTFNTIIGFLCQKGLTMQAV 417
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
E V+K+M G N+ + +I ++ GK+E
Sbjct: 418 E-VFKQMPEKGCCPNSVTYSSVIEGLAKTGKME 449
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 2/205 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ V YN VL +WE ++ ++ + PS T +V+ + G +
Sbjct: 255 PNTVNYNTVLKGLRTAGRWEDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRL 314
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K N + Y +V+ L +G D A+ + +M+ G + Y L + LC+
Sbjct: 315 LEKMSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCN 374
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
A + E+A M K+ + P ++++ +I G A +F QM + C PN VT
Sbjct: 375 AERWEDAEDLMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVT 434
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMA 257
+ +++ + G E++++L EM
Sbjct: 435 YSSVIEGLAKTGKMEQSLELLNEMG 459
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 100/239 (41%), Gaps = 20/239 (8%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKK--FKTGTL-------ERWDPRLE-- 54
+ V Y ++ L + GH+ ++ +M++ K F L ERW+ +
Sbjct: 326 NIVTYNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAEDLM 385
Query: 55 ---------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
PDI+ +N ++ ++ A V +Q+ ++G P++ TY V+E +
Sbjct: 386 AKMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKT 445
Query: 106 GKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
GK E ++ + Y +L L E K EA+ V ++ GI A LY
Sbjct: 446 GKMEQSLELLNEMGSKGFNPEINYHLLAECLNEEDKLVEAIQMVHKLQDTGISPQAVLYN 505
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
+ LC GK ++A+ + + P +Y+ LIQ G ++ A + + + +
Sbjct: 506 TILLGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQGLAHEGYMKEARELLSTLSS 564
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 8/204 (3%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+ + N ++ RR + A V++ G +A TY + + G+ + E
Sbjct: 86 PDVALANRLVRDLCRRGRPADAARVVEAC---GSAATAVTYSALADGYCRVGRLD---EA 139
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
R V +P+A AY L++ L G+ +A+ +++M RG Y L C
Sbjct: 140 RRVVDGMPVLPSAYAYNPLMHALCVRGQVRDALVLLDNMLYRGCAPDVVTYNILLEAACK 199
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
+A+ +D + P V+Y ++ G++ A + N + ++ C+PN V
Sbjct: 200 GRGYRQAMELIDLMRVEGCTPTNVTYNVIMDGMCREGDVDYARELLNSLPSYGCTPNTVN 259
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEM 256
N ++K G +E+ +L EM
Sbjct: 260 YNTVLKGLRTAGRWEDVEELIAEM 283
>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 556
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 137/312 (43%), Gaps = 35/312 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + + K+ ++D MR D PDIV YN V+
Sbjct: 185 PDVVTYTILLEATCKRSGYKQAVKLLDEMR---------------DKGCAPDIVTYNVVV 229
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY----NLVYEFFRKVQK 120
N + + + A L+ L G +P+ +Y +V++ + ++ L+ E RK +
Sbjct: 230 NGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRP 289
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
PN + + +L++ L R G + A+ ++ + + G ++ Y + C K + A
Sbjct: 290 ---PNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRA 346
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKA 239
+ ++ + P +VSY L+ A G + A + +Q+K+ C+P L++ N ++
Sbjct: 347 MAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDG 406
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ G EEA++L EM KGL PDI T++T+ E R ++
Sbjct: 407 LTKAGKTEEALELLNEMV-----------TKGLQ-PDIITYSTISSGLCREGRIEEAIKA 454
Query: 300 YKRMLHHGLHFN 311
+ ++ G+ N
Sbjct: 455 FCKVQDMGIRPN 466
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 132/292 (45%), Gaps = 15/292 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+EPD YN ++ R + + A VL + ++G P TY +++E Y
Sbjct: 148 MEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAV 207
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +++ K P+ + Y V+VN + +EG+ D+A+ ++ + G + Y + + L
Sbjct: 208 KLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGL 267
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C+A + E+A M ++ + P VV++ LI G ++ A I +Q+ + C+PN
Sbjct: 268 CTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNS 327
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
++ N ++ A+ + + AM + M + PDI ++NT+L A
Sbjct: 328 LSYNPILHAFCKQKKMDRAMAFVELMVSSGCY------------PDIVSYNTLLTALCRG 375
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARA 341
D + ++ G + +I ++AGK E LE+ E + +
Sbjct: 376 GEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKG 427
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 115/254 (45%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V + + L + G ++ +++D +PK P+ + YN +L
Sbjct: 290 PNVVTFNMLISFLCRRGLVEPAMEILDQ---IPKYGCT------------PNSLSYNPIL 334
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+A ++K+ + A ++ + G P +Y ++ + G+ + E +++ K
Sbjct: 335 HAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCT 394
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P ++Y +++ L + GKT+EA+ + +M +G+ Y ++ LC G+ EEA+
Sbjct: 395 PVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKA 454
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
K+ + +P V Y ++ +A +F M N C PN T I+++
Sbjct: 455 FCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAY 514
Query: 243 HGLFEEAMKLFQEM 256
GL +EA ++ E+
Sbjct: 515 EGLVKEAREMMAEL 528
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 110/261 (42%), Gaps = 50/261 (19%)
Query: 124 PNALAYKVLVN-----TLWREGKTDEAVSAVEDMERRGIVGSAA-LYYDLARCLCSAGK- 176
PNA+ ++ + L R G +EA+ VE M G+ SAA L + LC++G+
Sbjct: 49 PNAVPHRSAASNDRLRVLVRRGDLEEAIRLVESMA--GLEPSAAGPCAALIKKLCASGRT 106
Query: 177 ---------CEEALM-------------QMDK----ICKVANKPLVVSYTGLIQACLDSG 210
CE +M Q+D + + +P +Y LI+ G
Sbjct: 107 AEARRVLASCEPDVMSYNAMVAGYCVTGQLDNARRLVAAMPMEPDTYTYNTLIRGLCGRG 166
Query: 211 NIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
NA + + M + C P++VT I+++A + +++A+KL EM +
Sbjct: 167 RTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRD----------- 215
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
KG PDI T+N +++ E R DD K + +G N + ++ A + E
Sbjct: 216 KGCA-PDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWE 274
Query: 330 LLEITWEHLARADRITPPALI 350
E ++R R PP ++
Sbjct: 275 DAEKLMAEMSRKGR--PPNVV 293
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 25/178 (14%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFD-------------------VIDSMRSLPKKKFKTG 44
YPD V+Y ++ L + G + + VID + K +
Sbjct: 359 YPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALE 418
Query: 45 TL-ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
L E L+PDI+ Y+ + + R + E A +++ G +P+ Y ++ +
Sbjct: 419 LLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAIL--LG 476
Query: 104 ACGK---YNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
C + ++ + F V +PN Y +L+ L EG EA + ++ RG+V
Sbjct: 477 LCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVKEAREMMAELCSRGVV 534
>gi|255661000|gb|ACU25669.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 376
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 136/282 (48%), Gaps = 15/282 (5%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ ++ PD VVYN +LN R + + F + + + +G + S +++ ++M + GK +
Sbjct: 18 ESKVSPDAVVYNTMLNGYFRVAKIKDCFELWEMMGNEGNR-SVSSFNIMMRGLFDXGKVD 76
Query: 110 LVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
V + ++KS ++ +++ Y +LV+ + G ++++ +E E++G V A Y +
Sbjct: 77 EVISIWELMKKSDFVEDSITYGILVHGFCKNGXINKSLHVLEMAEQKGGVLDAFAYSAMI 136
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CS 227
LC ++A+ ++ + K KP Y LI + + ++A +F +M CS
Sbjct: 137 NGLCKEANLDKAVSVLNDMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTVHCS 196
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P ++T N ++ ++ +F EA L +EM E KGL P + T++ ++
Sbjct: 197 PTIITYNTLINGLCKNEMFGEAYDLVKEMLE-----------KGLN-PSVITYSMLMKGL 244
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + + ++ +++ G + + H +I GK +
Sbjct: 245 CLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTQ 286
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 105/242 (43%), Gaps = 14/242 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D Y+A++N + + A VL + + G KP+A Y ++ ++ K+ F
Sbjct: 128 DAFAYSAMINGLCKEANLDKAVSVLNDMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVF 187
Query: 116 RKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
R++ + P + Y L+N L + EA V++M +G+ S Y L + LC
Sbjct: 188 REMGTVHCSPTIITYNTLINGLCKNEMFGEAYDLVKEMLEKGLNPSVITYSMLMKGLCLD 247
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
K E AL +++ KP V + LI G Q A ++ M + C+PNLVT
Sbjct: 248 HKVERALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTQRALSLYFXMNRWKCAPNLVTH 307
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N +++ + + G A+ ++ + + + PDI ++N L + R
Sbjct: 308 NTLMEGFYKDGDIRNALVIWARVLRNG------------LEPDIISYNITLKGLCSCNRI 355
Query: 294 DD 295
D
Sbjct: 356 CD 357
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 101/237 (42%), Gaps = 13/237 (5%)
Query: 74 EGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLV 133
+GA V +++ + P A Y ++ K +E + + + ++ +++
Sbjct: 7 DGAERVYKEIVESKVSPDAVVYNTMLNGYFRVAKIKDCFELWEMMGNEGNRSVSSFNIMM 66
Query: 134 NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANK 193
L+ GK DE +S E M++ V + Y L C G ++L ++ +
Sbjct: 67 RGLFDXGKVDEVISIWELMKKSDFVEDSITYGILVHGFCKNGXINKSLHVLEMAEQKGGV 126
Query: 194 PLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKL 252
+Y+ +I N+ A + N M K+ C PN N ++ + FE+A+++
Sbjct: 127 LDAFAYSAMINGLCKEANLDKAVSVLNDMIKSGCKPNAHVYNTLINGLVGASKFEDAIRV 186
Query: 253 FQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH 309
F+EM + H + P I T+NT+++ + + + + K ML GL+
Sbjct: 187 FREMG--TVHCS----------PTIITYNTLINGLCKNEMFGEAYDLVKEMLEKGLN 231
>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
Length = 624
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 107/214 (50%), Gaps = 4/214 (1%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + +EP++VVY+++L + +WE V ++ ++G +P Y +++ + G
Sbjct: 175 EMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVG 234
Query: 107 KYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K + V++ PN + Y VL+N + +EG EA+ ++ M +G+ Y
Sbjct: 235 KAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYN 294
Query: 166 DLARCLCSAGKCEEALMQMDKICKVAN--KPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
L + L + +EA+ ++++ + N KP VV++ +IQ D G ++ A + M+
Sbjct: 295 TLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMME 354
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
C NLVT N+++ L +AM+L EM
Sbjct: 355 ETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEM 388
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 104/213 (48%), Gaps = 4/213 (1%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D+V Y ++ + + A ++ ++ + G +P+ Y +++ G++ V + F
Sbjct: 149 DVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVF 208
Query: 116 RKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
++ +K P+ + Y L+++L + GK +A ++ M RRG+ + Y L C+C
Sbjct: 209 VEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKE 268
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM---KNFCSPNLV 231
G +EA+ + K+ + P VV+Y LI+ D + A ++ +M KN PN+V
Sbjct: 269 GSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVV 328
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
T N +++ + G +A ++ M E +N
Sbjct: 329 TFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVN 361
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 106/265 (40%), Gaps = 79/265 (29%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D V YN VL A RR + A +L+ + +E AC
Sbjct: 76 DAVSYNTVLTALCRRGHHDRAGALLRAMS--------------LEPHPACR--------- 112
Query: 116 RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
PNA++Y VL+ L + D+AV + M G+ Y L R LC A
Sbjct: 113 --------PNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAA 164
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK------------ 223
+ ++A+ M ++C+ +P VV Y+ L+Q SG ++ +F +M
Sbjct: 165 EVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYT 224
Query: 224 ----NFC--------------------SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
+ C PN+VT N+++ + G +EA+ + ++M+E
Sbjct: 225 GLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSE- 283
Query: 260 SNHINREYDKKGLVIPDIYTFNTML 284
KG V PD+ T+NT++
Sbjct: 284 ----------KG-VAPDVVTYNTLI 297
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 142/331 (42%), Gaps = 36/331 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + +L + G K+ V+D M + G LEP++V YN ++
Sbjct: 218 PDVVMYTGLIDSLCKVGKAKKAHGVMDMM-------VRRG--------LEPNVVTYNVLI 262
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM---LACGKYNLVYEFFRKVQKS 121
N + + A VL+++ ++G P TY +++ + L + + E + +
Sbjct: 263 NCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNI 322
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
PN + + ++ L G+ +A ME G + + Y L L K +A+
Sbjct: 323 VKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAM 382
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAY 240
MD++ + +P +Y+ LI+ + A + + M++ P L ++ A
Sbjct: 383 ELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAM 442
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTML-DACAAEKRWDDLEL 298
E G+ E A LF EM D+N P D+ ++TM+ AC A EL
Sbjct: 443 CEQGMMERARNLFNEM--DNN------------FPLDVVAYSTMIHGACKAGDLKTAKEL 488
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ K ++ GL +A + +I +++G +E
Sbjct: 489 L-KSIVDEGLTPDAVTYSIVINMFAKSGDME 518
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/255 (19%), Positives = 106/255 (41%), Gaps = 20/255 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V + S+ L G +++ F V M +TG + ++V YN ++
Sbjct: 325 PNVVTFNSVIQGLCDIGRMRQAFQVRAMME-------ETGCM--------VNLVTYNLLI 369
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+R + A ++ ++ G +P + TY ++++ + + + ++ I
Sbjct: 370 GGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIE 429
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P Y L+ + +G + A + +M+ + A Y + C AG + A
Sbjct: 430 PELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVA-YSTMIHGACKAGDLKTAKEL 488
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
+ I P V+Y+ +I SG+++ A + QM F P++ + +++ Y
Sbjct: 489 LKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFL-PDVAVFDSLIQGYS 547
Query: 242 EHGLFEEAMKLFQEM 256
G + ++L +EM
Sbjct: 548 TKGEINKVLELIREM 562
>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
Length = 1010
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 141/332 (42%), Gaps = 35/332 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
DTV Y + L +A +E D + MRS P++V Y +L
Sbjct: 298 DTVIYTQMISGLCEASLFEEAMDFLSRMRS---------------SSCIPNVVTYRILLC 342
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
C+R++Q +L + +G PS + ++ G Y+ Y+ +K+ P
Sbjct: 343 GCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQP 402
Query: 125 NALAYKVLVNTLWREGK------TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ Y +L+ + K + A A +M +V + +LARCLC AGK E
Sbjct: 403 GYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFE 462
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMV 237
+A + ++ P +Y+ +I ++ + NA +F +MK N P++ T I++
Sbjct: 463 KAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILI 522
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
++ + GL ++A K F EM D P++ T+ ++ A ++
Sbjct: 523 DSFCKVGLLQQARKWFDEMVRDG------------CAPNVVTYTALIHAYLKARKMSSAN 570
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+++ ML G N + +I ++G++E
Sbjct: 571 ELFEMMLSEGCIPNVVTYTALIDGHCKSGQIE 602
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 76/334 (22%), Positives = 135/334 (40%), Gaps = 51/334 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLE---RW 49
PDT Y + L A + F + + M+S L K G L+ +W
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKW 537
Query: 50 DPRL-----EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM----- 99
+ P++V Y A+++A ++ ++ A + + + +G P+ TY ++
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCK 597
Query: 100 --EVMLACGKYNLV--------YEFFRKVQKSYI--PNALAYKVLVNTLWREGKTDEAVS 147
++ AC Y + + + K+ I PN Y LV+ L + K EA
Sbjct: 598 SGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARD 657
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
++ M G + +Y L C GK +EA M K+ + P V +Y+ LI
Sbjct: 658 LLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLF 717
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
+ A + ++M +N C+PN++ M+ + G +EA +L M E H
Sbjct: 718 KDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCH---- 773
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDD-LELV 299
P++ T+ M+D + D LEL+
Sbjct: 774 --------PNVVTYTAMIDGFGKAGKVDKCLELM 799
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 102/220 (46%), Gaps = 16/220 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y ++ L +A +KE D++D M EP+ +VY+A++
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSV---------------EGCEPNHIVYDALI 678
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYI 123
+ + + + A V ++ ++G P+ TY +++ + + +L + R ++ S
Sbjct: 679 DGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCA 738
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y +++ L + GKTDEA + ME +G + Y + AGK ++ L
Sbjct: 739 PNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLEL 798
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
M ++ P V+Y LI C +G + +A + ++MK
Sbjct: 799 MRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMK 838
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 131/318 (41%), Gaps = 34/318 (10%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD Y+ V+ + + AF + +++K P TY ++++ G ++
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKW 537
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F + V+ PN + Y L++ + K A E M G + + Y L C
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCK 597
Query: 174 AGKCEEA------------LMQMDKICKVAN----KPLVVSYTGLIQACLDSGNIQNAAY 217
+G+ E+A + +D K+ + P + +Y L+ + ++ A
Sbjct: 598 SGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARD 657
Query: 218 IFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
+ + M C PN + + ++ + + G +EA +F +M+E R Y P+
Sbjct: 658 LLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSE------RGYG------PN 705
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLE 332
+YT+++++D +KR D V RML + N + MI + GK + L+
Sbjct: 706 VYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMS 765
Query: 333 ITWEHLARADRITPPALI 350
+ E + +T A+I
Sbjct: 766 MMEEKGCHPNVVTYTAMI 783
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 88/200 (44%), Gaps = 5/200 (2%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N ++ C R W A L +LK G KPS TY ++ V L + + Y R++
Sbjct: 201 NVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSD 260
Query: 121 S-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
S + + V+ L + G+ EA++ +E E + +Y + LC A EE
Sbjct: 261 SGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFK---LDTVIYTQMISGLCEASLFEE 317
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A+ + ++ + P VV+Y L+ CL + I + M C P+ N ++
Sbjct: 318 AMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIH 377
Query: 239 AYLEHGLFEEAMKLFQEMAE 258
AY G + A KL ++M +
Sbjct: 378 AYCRSGDYSYAYKLLKKMGD 397
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++++Y +++ + + + A+ ++ ++++G P+ TY +++ GK + E
Sbjct: 739 PNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLEL 798
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
R++ K PN + Y+VL+N G D+A +++M++ A Y +
Sbjct: 799 MRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIE---- 854
Query: 174 AGKCEEALMQM---DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227
G E ++ + D+I + P++ +Y LI + +G ++ A + M + S
Sbjct: 855 -GFNREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKXMSSCTS 910
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/181 (18%), Positives = 77/181 (42%), Gaps = 18/181 (9%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S P+ + Y + L + G E + ++ M + P++V Y
Sbjct: 736 SCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMME---------------EKGCHPNVVTYT 780
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
A+++ + + + +++Q+ +G P+ TY +++ A G + ++ +++++
Sbjct: 781 AMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQT 840
Query: 122 YIPNALA-YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
Y P +A Y+ ++ RE ++ ++++ V Y L C AG+ E A
Sbjct: 841 YWPKHMAGYRKVIEGFNREFII--SLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELA 898
Query: 181 L 181
L
Sbjct: 899 L 899
>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
Length = 699
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 134/310 (43%), Gaps = 36/310 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ L +AG D + + ++ G PD V ++ ++
Sbjct: 124 PDVMTYTALVHALCKAGKF-------DEAQGMLREMVAQGC--------APDTVTFSTLI 168
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-----Q 119
+ + E AF VL+ + Q+G S + +++ + C KYN V E KV
Sbjct: 169 DGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRL--CNKYNSV-ELASKVLGVVIA 225
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K + P L + +++N + D A +E M +G V + + L LC A + E
Sbjct: 226 KGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGE 285
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A ++K+ P VV+Y+ +I G + +A +F M + C PN+VT NI++
Sbjct: 286 AQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILID 345
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ EEA +L+ M E PDI T+N+++D + D+
Sbjct: 346 GLCKAKRIEEARQLYHRMRETG------------CAPDIITYNSLIDGLCKSFQVDEAFQ 393
Query: 299 VYKRMLHHGL 308
+++ + G+
Sbjct: 394 LFQTIPESGV 403
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 104/233 (44%), Gaps = 15/233 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P ++++N V+N + K + A+ +L+ + ++G P+ T+ +++ + + +
Sbjct: 230 PTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQL 289
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K V PN + Y ++N L ++G+ D+A + MERR + + L LC
Sbjct: 290 LEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCK 349
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLV 231
A + EEA ++ + P +++Y LI S + A +F + + N V
Sbjct: 350 AKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAV 409
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
T + + Y G +A ++F + + KG PD+ T+ +++
Sbjct: 410 TYSTLFHGYAALGRMADACRIFSMLVD-----------KGFS-PDLATYTSLI 450
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/299 (20%), Positives = 130/299 (43%), Gaps = 18/299 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ Y ++ + A +L+++K G + +A + +M+ + G+ E
Sbjct: 55 PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEH 114
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
FR + K P+ + Y LV+ L + GK DEA + +M +G + L LC
Sbjct: 115 FRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKF 174
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQ-ACLDSGNIQNAAYIFNQM--KNFCSPNLV 231
G E+A ++ + + ++ +IQ C +++ A+ + + K F +P ++
Sbjct: 175 GSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGF-TPTVL 233
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
N+++ + + + A KL + M E KG V P+++TF ++
Sbjct: 234 MFNLVINGFCKAKDLDSAYKLLEVMIE-----------KGCV-PNVFTFTILITGLCKAN 281
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
R + + + ++M+ G N + +I + G+V+ ++ + R R PP ++
Sbjct: 282 RVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMER--RNCPPNVV 338
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 90/209 (43%), Gaps = 5/209 (2%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN----L 110
P + +AVL E A + + +G A Y LV+E M K++ +
Sbjct: 476 PRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAV 535
Query: 111 VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ + K + + P++ A LV +L + GKTD+A + M RG + + Y L
Sbjct: 536 LEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSG 595
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPN 229
L + +EA + + P + + +I + + +A + +M C P+
Sbjct: 596 LSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPD 655
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
+ TCN ++ Y + G + A KL +EM E
Sbjct: 656 IETCNTLIGGYCKSGRADLARKLLEEMTE 684
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 86/200 (43%), Gaps = 16/200 (8%)
Query: 107 KYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
K LV FF + N + ++ L R + EA++ + R + + Y
Sbjct: 3 KPELVLLFFDWARSRVGHNVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGI 62
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC 226
L R SAG + A+ ++++ + V +T L++ D+G + A F M C
Sbjct: 63 LIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKDC 122
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+P+++T +V A + G F+EA + +EM PD TF+T++D
Sbjct: 123 APDVMTYTALVHALCKAGKFDEAQGMLREMVAQG------------CAPDTVTFSTLIDG 170
Query: 287 C----AAEKRWDDLELVYKR 302
+ E+ + LE V +R
Sbjct: 171 LCKFGSEEQAFRVLEDVIQR 190
>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 132/279 (47%), Gaps = 14/279 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PD Y + ++ + + E A +L+++K+ G +P+A TY +++ G + +
Sbjct: 257 VKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAF 316
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++ K V++ +P Y +L++ L+ + K DEA +++M +G+V + Y L
Sbjct: 317 DYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGY 376
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C G ++A D++ +P V+YT LI G ++ A +F ++ + P+L
Sbjct: 377 CRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDL 436
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+ N ++ + +G + A + +EM + V+PD TFNT++ E
Sbjct: 437 IMFNALIDGHCANGNMDRAFAMLKEMDQMK------------VVPDEVTFNTLMQGRCRE 484
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + + + M G+ + + +I S+ G ++
Sbjct: 485 GKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMK 523
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 117/277 (42%), Gaps = 20/277 (7%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK----YNLVYE 113
V+Y+ ++ AC K+ + AF +K +G P ++ + L + + L E
Sbjct: 122 VLYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAE 181
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
FR KS + + + +++N L +EGK +A + ME GI + Y + CS
Sbjct: 182 MFRMRIKSSV---VTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCS 238
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
G+ E A M D + KP +Y I G ++ A+ + +MK P VT
Sbjct: 239 RGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVT 298
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ Y G E A +M + ++P + T+N ++ A + +
Sbjct: 299 YNTLIDGYCNKGNLEMAFDYRDKMVREG------------LMPTVSTYNMLIHALFLDCK 346
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
D+ + + K M GL ++ + +I R G V+
Sbjct: 347 MDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVK 383
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 133/291 (45%), Gaps = 20/291 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P + N +L+ ++ + E A+ + ++ + K S T+ +++ V+ GK EF
Sbjct: 154 PHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEF 213
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ I PN + Y +++ G+ + A + M+ RG+ + Y +C
Sbjct: 214 IGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCK 273
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
GK EEA ++K+ ++ +P V+Y LI + GN++ A ++M + P + T
Sbjct: 274 EGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVST 333
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA---CAA 289
N+++ A +EA + +EM+E KGLV PD T+N +++ C
Sbjct: 334 YNMLIHALFLDCKMDEADGIIKEMSE-----------KGLV-PDSVTYNILINGYCRCGN 381
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
K+ L + M+ G+ + +I S+ G+++ + +E + R
Sbjct: 382 VKKAFTL---HDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVR 429
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 95/219 (43%), Gaps = 16/219 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD+V Y + + G++K+ F + D M S ++P V Y +++
Sbjct: 364 PDSVTYNILINGYCRCGNVKKAFTLHDEMIS---------------KGIQPTRVTYTSLI 408
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+R + + A + +++ ++G P + +++ A G + + +++ Q +
Sbjct: 409 YVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVV 468
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + L+ REGK + A +E+M+ RGI Y L G ++A
Sbjct: 469 PDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRV 528
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
D++ + P +++Y LIQ + +A + +M
Sbjct: 529 RDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEM 567
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 84/209 (40%), Gaps = 13/209 (6%)
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
I + Y +L+ + D+A + M+ +G++ D+ + + E+A +
Sbjct: 118 IKTYVLYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWV 177
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYL 241
++ ++ K VV++ +I G ++ A M+ PN+VT N ++ Y
Sbjct: 178 LYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYC 237
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G E A +F M K V PD YT+ + + E + ++ + +
Sbjct: 238 SRGRVEGARMIFDLM------------KCRGVKPDSYTYGSFISGMCKEGKLEEASGMLE 285
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+M GL A + +I G +E+
Sbjct: 286 KMKEIGLRPTAVTYNTLIDGYCNKGNLEM 314
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 75/187 (40%), Gaps = 27/187 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
P V Y S+ L + G +K+ D+ + + +L G ++R
Sbjct: 399 PTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAM 458
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L+ PD V +N ++ R + E A +++++K +G KP +Y ++
Sbjct: 459 LKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLIS---G 515
Query: 105 CGKYNLVYEFFR----KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
K + + FR + + P L Y L+ L + + D A +++M +GI +
Sbjct: 516 YSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPN 575
Query: 161 AALYYDL 167
Y L
Sbjct: 576 DNTYLSL 582
>gi|414888268|tpg|DAA64282.1| TPA: hypothetical protein ZEAMMB73_921256 [Zea mays]
Length = 868
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 150/349 (42%), Gaps = 33/349 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV+YR I AG++ ++ M + TG D Y ++
Sbjct: 284 PDTVSYRHIVDAFASAGNLSRAAELFSEMAA-------TGH--------TADASAYLGLM 328
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
A R A VL+Q++ G P+A TY +++++ G+++ V + FR+++ + P
Sbjct: 329 EAHTRVGATADAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTAVPP 388
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ Y VL G E V DM + G+ ++ G +A +
Sbjct: 389 DTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVL 448
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEH 243
+ + + P +YTGL++A + + A FN M S P L T N + AY
Sbjct: 449 EYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARG 508
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
GLF+EA +F M+ ++ I + D +F+ +++A R DD Y M
Sbjct: 509 GLFQEAEAIFSRMSNNAG-IQKSKD----------SFDALIEAYCQGSRLDDAVKAYMEM 557
Query: 304 LHHGLHFNA-KRHLRMILDA-SRAGKVELLEITWEHLARADRITPPALI 350
FN +R L +L+A AG ++ + +E L + +T P++I
Sbjct: 558 RKS--RFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSS--VTMPSVI 602
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 95/211 (45%), Gaps = 3/211 (1%)
Query: 51 PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
P + PD+ YN +L A R + + +L + + G P +Y +++ + G +
Sbjct: 245 PSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDAFASAGNLSR 304
Query: 111 VYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
E F ++ + + +A AY L+ R G T +AV+ + M+ G +AA Y L
Sbjct: 305 AAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCAPTAATYRVLLD 364
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSP 228
G+ + + Q+ + + A P +Y L + D G + +F+ M K P
Sbjct: 365 LYGRQGRF-DGVRQLFREMRTAVPPDTATYNVLFRVFGDGGFFKEVVELFHDMLKTGVQP 423
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
++VTC ++ A GL +A ++ + M +
Sbjct: 424 DMVTCENVMAACGHGGLHGDAREVLEYMTRE 454
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 103/262 (39%), Gaps = 28/262 (10%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK-------YNLVY 112
Y +++ A R E A +L Q+K G P+A TY V+ AC + ++++
Sbjct: 177 YTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLA---ACARATDPPVPFDMLL 233
Query: 113 EFFRKVQK----SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
F +++ S P+ Y L+ D++ + M G+ Y +
Sbjct: 234 GLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIV 293
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCS 227
SAG A ++ + +Y GL++A G +A + QM+ + C+
Sbjct: 294 DAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCA 353
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P T +++ Y G F+ +LF+EM + V PD T+N +
Sbjct: 354 PTAATYRVLLDLYGRQGRFDGVRQLFREM-------------RTAVPPDTATYNVLFRVF 400
Query: 288 AAEKRWDDLELVYKRMLHHGLH 309
+ ++ ++ ML G+
Sbjct: 401 GDGGFFKEVVELFHDMLKTGVQ 422
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 67/327 (20%), Positives = 130/327 (39%), Gaps = 45/327 (13%)
Query: 15 VTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWE 74
V G A + E+ +ID + +LP + LE RL + + AV RR W+
Sbjct: 63 VPSGNARNSYEVESLIDRLSNLPPRGSIARCLETARHRLT--LQDFAAVYREFSRRGDWQ 120
Query: 75 GAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNL--VYEFFRKVQKSYIPNALAYKV 131
+ + + +++Q +P + +V+ V+ G L E F + AL+Y
Sbjct: 121 RSLRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLDKCLEVFHDLPAES-RTALSYTS 179
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV- 190
L+ R +EA + ++ M+ G+ +AA Y + L + + + + D + +
Sbjct: 180 LIAAYARNALHEEARALLDQMKATGVAPTAATYNTV---LAACARATDPPVPFDMLLGLF 236
Query: 191 ---------ANKPLVVSYTGLI-QACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240
+ +P + +Y L+ A + S Q+ + ++ SP+ V+ +V A+
Sbjct: 237 AEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTMLEAGVSPDTVSYRHIVDAF 296
Query: 241 LEHGLFEEAMKLFQEMA------------------------EDSNHINREYDKKGLVIPD 276
G A +LF EMA D+ + R+ G P
Sbjct: 297 ASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATADAVAVLRQMQADGCA-PT 355
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRM 303
T+ +LD + R+D + +++ M
Sbjct: 356 AATYRVLLDLYGRQGRFDGVRQLFREM 382
>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
Length = 375
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 140/312 (44%), Gaps = 31/312 (9%)
Query: 4 YPDTVAYRS-IAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNA 62
YPD + Y I T ++G + + ++D M S K PD+V YN
Sbjct: 13 YPDVITYTILIEATCAESG-VGQAMKLLDEMGSRGCK---------------PDVVTYNV 56
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKS 121
++N + + + A L + G +P+ T+ +++ M + G++ + + V+K
Sbjct: 57 LVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKG 116
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
P+ + + +L+N L R+G A+ +E M G ++ Y L C K + A+
Sbjct: 117 CSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAI 176
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAY 240
++ + P +V+Y ++ A G + A + NQ+ + CSP L+T N ++
Sbjct: 177 QYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGL 236
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ G ++A++L EM KGL PD+ T+++++ + E + ++ +
Sbjct: 237 SKVGKTDQAVELLHEMR-----------GKGLK-PDVITYSSLIAGLSREGKVEEAIKFF 284
Query: 301 KRMLHHGLHFNA 312
+ G+ NA
Sbjct: 285 HDVEGFGVKPNA 296
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/291 (21%), Positives = 127/291 (43%), Gaps = 32/291 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + + + G + E ++SM S +P+++ +N +L
Sbjct: 49 PDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGS---------------QPNVITHNIIL 93
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ +W A +L ++ ++G PS T+ +++ + G + K+
Sbjct: 94 RSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCT 153
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN+L+Y L++ +E K D A+ +E M RG Y + LC GK + A+
Sbjct: 154 PNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVEL 213
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
++++ P++++Y +I G A + ++M+ P+++T + ++
Sbjct: 214 LNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSR 273
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGL-VIPDIYTFNT-MLDACAAEK 291
G EEA+K F +D +G V P+ +T+N+ M C A++
Sbjct: 274 EGKVEEAIKFF-------------HDVEGFGVKPNAFTYNSIMFGLCKAQQ 311
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 4/178 (2%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDIV YN +L A + + + A +L QL +G P TY V++ + GK + E
Sbjct: 189 PDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVEL 248
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++ K P+ + Y L+ L REGK +EA+ D+E G+ +A Y + LC
Sbjct: 249 LHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCK 308
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV 231
A + + A+ + + KP VSYT LI+ + G + A + N++ CS +V
Sbjct: 309 AQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNEL---CSRGVV 363
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 98/215 (45%), Gaps = 13/215 (6%)
Query: 116 RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
R+++K P+ + Y +L+ E +A+ +++M RG Y L +C G
Sbjct: 6 RQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEG 65
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCN 234
+ +EA+ ++ + ++P V+++ ++++ +G +A + +M + CSP++VT N
Sbjct: 66 RLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFN 125
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
I++ GL A+ + ++M P+ ++N +L EK+ D
Sbjct: 126 ILINFLCRKGLLGRAIDILEKMPTHG------------CTPNSLSYNPLLHGFCKEKKMD 173
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ M+ G + + + M+ + GKV+
Sbjct: 174 RAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVD 208
>gi|384251704|gb|EIE25181.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
Length = 905
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 108/233 (46%), Gaps = 14/233 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V YN +++ + WE VL +K +G +P TY ++ CG+
Sbjct: 278 PNVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACNMCGQPREAMAV 337
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++ + + Y PNA Y L++ + G+ D+ + ++M +G S Y L
Sbjct: 338 YKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLISACEK 397
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
AG+ E AL +++ P V+Y LI AC + A+ +F QM K C+P++VT
Sbjct: 398 AGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQKGGCTPDVVT 457
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
++ +Y + G + A+ +++M + R PD FN ++D
Sbjct: 458 FTALISSYEKGGQWRRALGAYEQM-----RLQR-------CKPDAIVFNAIID 498
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 131/297 (44%), Gaps = 15/297 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D+ Y A+++ C+ ++ + A + ++++ + + + TY +M V + CG L + +
Sbjct: 209 DVYTYTAMISMCIYQQDVDRAMDLAKEMRVRNIERNVHTYTALMNVCIKCGNCPLALDTY 268
Query: 116 RKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ Q PN + Y L++ + G ++ + + M+ G+ Y L
Sbjct: 269 NHMRQDGACPNVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACNMC 328
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTC 233
G+ EA+ ++ P +Y LI A +G + +F +M C +++T
Sbjct: 329 GQPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITY 388
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
+ ++ A + G +E A++LF EMA + IP+ T+N+++ ACA +W
Sbjct: 389 SSLISACEKAGQWELALELFNEMAGEG------------CIPNTVTYNSLITACAQGAQW 436
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
+ V+++M G + +I + G+ +E + R R P A++
Sbjct: 437 EKASEVFEQMQKGGCTPDVVTFTALISSYEKGGQWRRALGAYEQM-RLQRCKPDAIV 492
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 119/272 (43%), Gaps = 20/272 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ G+ G ++ V+ M++ +EP + YN ++
Sbjct: 278 PNVVTYNTLIDVYGKMGLWEQGIKVLTLMKT---------------EGVEPVLRTYNTLI 322
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
AC Q A V +++ +G P+ATTY ++ G+ + V E F++ V K
Sbjct: 323 IACNMCGQPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCE 382
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y L++ + G+ + A+ +M G + + Y L + E+A
Sbjct: 383 RSVITYSSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEV 442
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+++ K P VV++T LI + G + A + QM+ C P+ + N ++ E
Sbjct: 443 FEQMQKGGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVFNAIIDTLWE 502
Query: 243 HGLF---EEAMKLFQEMAEDSNHINREYDKKG 271
G+ +A+ LFQ+ ED + + +D G
Sbjct: 503 TGVIWAQRKALALFQQAVEDGHFKQQRWDTSG 534
>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
Length = 2021
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 142/327 (43%), Gaps = 29/327 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L + G+ ++ SM +PD+V+Y +++
Sbjct: 168 PNVVTYGTLINGLCKVGNTSAAIRLLRSMEQ---------------GNCQPDVVIYTSII 212
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
++ + +Q AF + Q+ QG P TY ++ + ++ V ++ S I
Sbjct: 213 DSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKIL 272
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + +V+ L +EGK EA V+ M +RG+ Y L C + +EA+
Sbjct: 273 PDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKV 332
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
D + + P V+SYT LI I A Y+F +M + P+ T N ++
Sbjct: 333 FDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCH 392
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G ++A+ LF EM +PD+ T++ +LD+ + ++ + K
Sbjct: 393 VGRLQDAIALFHEMVARGQ------------MPDLVTYSILLDSLCKNRHLEEAMALLKA 440
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
+ L+ + + + +I RAG++E
Sbjct: 441 IEASNLNPDIQVYNIIIDGMCRAGELE 467
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 122/281 (43%), Gaps = 29/281 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + ++ L + G + E +++D M ++R +EPD+V Y ++
Sbjct: 273 PDVVIFSTVVDALCKEGKVTEAHEIVDMM------------IQR---GVEPDVVTYTTLM 317
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN-LVYEFFRKVQKSYI 123
+ + + + A V + ++G P +Y ++ K + +Y F +K +I
Sbjct: 318 DGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWI 377
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y L+ L G+ +A++ +M RG + Y L LC EEA+
Sbjct: 378 PDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMAL 437
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+ I P + Y +I +G ++ A +F+ + + P++ T NIM+ +
Sbjct: 438 LKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCK 497
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
GL EA KLF EM D N + PD T+NT+
Sbjct: 498 RGLLNEANKLFMEM--DGNDCS----------PDGCTYNTI 526
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 123/292 (42%), Gaps = 14/292 (4%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++ N ++N+ + AF VL ++ + G +P TT+ ++ + GK
Sbjct: 98 PNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHL 157
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F K + + + PN + Y L+N L + G T A+ + ME+ +Y + LC
Sbjct: 158 FDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCK 217
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
+ EA ++ P + +YT L+ A + ++ + NQM N P++V
Sbjct: 218 DRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVI 277
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+ +V A + G EA ++ M + V PD+ T+ T++D +
Sbjct: 278 FSTVVDALCKEGKVTEAHEIVDMMIQRG------------VEPDVVTYTTLMDGHCLQSE 325
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI 344
D+ V+ M+ G + + +I + K++ +E + R + I
Sbjct: 326 MDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWI 377
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 133/302 (44%), Gaps = 34/302 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTLE-------RW------ 49
PD V Y SI +L + + E F++ M + + F +L W
Sbjct: 203 PDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTL 262
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ ++ PD+V+++ V++A + + A ++ + Q+G +P TY +M+
Sbjct: 263 LNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCL 322
Query: 105 CGKYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
+ + + F V+K + P+ ++Y L+N + K D+A+ E+M R+ +
Sbjct: 323 QSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKT 382
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L LC G+ ++A+ ++ P +V+Y+ L+ + + +++ A + ++
Sbjct: 383 YNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIE 442
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ +P++ NI++ G E A LF ++ H P ++T+N
Sbjct: 443 ASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLH------------PSVWTYNI 490
Query: 283 ML 284
M+
Sbjct: 491 MI 492
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 121/294 (41%), Gaps = 55/294 (18%)
Query: 54 EPDIVVYNAVLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+PD + ++ CV K E A + ++ +G +P+ TYG ++ + G +
Sbjct: 132 QPDPTTFTTLIRGLCVEGKIGE-ALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAI 190
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
R +++ P+ + Y ++++L ++ + EA + M +GI Y L L
Sbjct: 191 RLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHAL 250
Query: 172 CS-----------------------------------AGKCEEALMQMDKICKVANKPLV 196
C+ GK EA +D + + +P V
Sbjct: 251 CNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDV 310
Query: 197 VSYTGLIQA-CLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253
V+YT L+ CL S + A +F+ M K F +P++++ ++ Y + ++AM LF
Sbjct: 311 VTYTTLMDGHCLQS-EMDEAVKVFDMMVRKGF-APDVISYTTLINGYCKIHKIDKAMYLF 368
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
+EM +E+ IPD T+NT++ R D ++ M+ G
Sbjct: 369 EEMCR------KEW------IPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARG 410
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 65/154 (42%), Gaps = 16/154 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + +L + H++E ++ ++ + L PDI VYN ++
Sbjct: 413 PDLVTYSILLDSLCKNRHLEEAMALLKAIEA---------------SNLNPDIQVYNIII 457
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ R + E A + L +G PS TY +++ + G N + F ++ +
Sbjct: 458 DGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCS 517
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
P+ Y + + +T A+ +E+M RG
Sbjct: 518 PDGCTYNTIARGFLQNNETLRAIQLLEEMLARGF 551
>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
Length = 532
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 147/346 (42%), Gaps = 34/346 (9%)
Query: 5 PDTVAYRSIAVTL---GQAGHIKELF----------------DVIDSMRSLPKKKFKTGT 45
PD V+Y ++ G G LF VID + +
Sbjct: 119 PDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAV 178
Query: 46 LERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L++ D + P+ YN++++ + QW A +L+++ + GQ+P+ TY ++++ +
Sbjct: 179 LQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCK 238
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + E F +Q P+A Y L++ EG E + + M + G+ +
Sbjct: 239 SGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHT 298
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
+ C G+ +EA + K+ ++ P +V+YT +I G + +A F QM
Sbjct: 299 FSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMI 358
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ SPN++T ++ + +G +E+A +LF EM + + PD+ F
Sbjct: 359 DDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRG------------IPPDVTIFTA 406
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
M+D E + + + ++ M G N + MI AG+V
Sbjct: 407 MIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEV 452
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 131/311 (42%), Gaps = 28/311 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM-RSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
P+ V Y + L ++G E ++ +SM +S PK PD Y ++
Sbjct: 224 PNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPK----------------PDATTYGSL 267
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SY 122
L+ V + Q G + + T+ + + CG+ + F K+Q+ +
Sbjct: 268 LHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGF 327
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P+ + Y +++ L + G+ D+A+S M G+ + + L GK E+A
Sbjct: 328 MPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEE 387
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
++ P V +T +I G + A +F+ M + PN+V+ N M+ Y
Sbjct: 388 LFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYF 447
Query: 242 EHGLFEEAMKLFQEM--------AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
G E MKL +M A N + GL PD+ T T++D+C + R
Sbjct: 448 IAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMGLK-PDVDTCKTLIDSCCEDGRI 506
Query: 294 DDLELVYKRML 304
+D+ +++ ML
Sbjct: 507 EDILTLFREML 517
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 122/295 (41%), Gaps = 16/295 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V Y+ V++ + A+ + ++ G P+ T V++ + +
Sbjct: 119 PDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAV 178
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++ +I PN Y L++ G+ EAV +++M R G + Y L CLC
Sbjct: 179 LQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCK 238
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+G EA + + + KP +Y L+ GN+ + + M +N N T
Sbjct: 239 SGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHT 298
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+I + AY + G +EA F +M + +PDI T+ T++D R
Sbjct: 299 FSIEIYAYCKCGRLDEASLTFIKMQQLG------------FMPDIVTYTTVIDGLCKIGR 346
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPP 347
DD + +M+ GL N +I S GK E E + + DR PP
Sbjct: 347 LDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEM--MDRGIPP 399
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 110/237 (46%), Gaps = 18/237 (7%)
Query: 90 PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSA 148
P T+G+++ G NL + ++ K+ + +A+A+ L+ TL + +T +A++
Sbjct: 11 PDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRADAVAFTPLLRTLCAKKRTSDAMNI 70
Query: 149 V-EDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANK--PLVVSYTGLIQA 205
V M G Y L + LC+ KCEEA + + + + P VVSY+ +I
Sbjct: 71 VLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYSTVIHG 130
Query: 206 CLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
G++ A +F +M + PN+VTCN ++ + ++A + Q+M ++
Sbjct: 131 FFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEH---- 186
Query: 265 REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILD 321
++P+ T+N+++ + +W + + K M G N + M++D
Sbjct: 187 --------IMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTY-NMLID 234
>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Vitis vinifera]
Length = 1045
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 141/332 (42%), Gaps = 35/332 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
DTV Y + L +A +E D + MRS P++V Y +L
Sbjct: 298 DTVIYTQMISGLCEASLFEEAMDFLSRMRS---------------SSCIPNVVTYRILLC 342
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
C+R++Q +L + +G PS + ++ G Y+ Y+ +K+ P
Sbjct: 343 GCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQP 402
Query: 125 NALAYKVLVNTLWREGK------TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ Y +L+ + K + A A +M +V + +LARCLC AGK E
Sbjct: 403 GYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFE 462
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMV 237
+A + ++ P +Y+ +I ++ + NA +F +MK N P++ T I++
Sbjct: 463 KAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILI 522
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
++ + GL ++A K F EM D P++ T+ ++ A ++
Sbjct: 523 DSFCKVGLLQQARKWFDEMVRDG------------CAPNVVTYTALIHAYLKARKMSSAN 570
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+++ ML G N + +I ++G++E
Sbjct: 571 ELFEMMLSEGCIPNVVTYTALIDGHCKSGQIE 602
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/334 (22%), Positives = 135/334 (40%), Gaps = 51/334 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLE---RW 49
PDT Y + L A + F + + M+S L K G L+ +W
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKW 537
Query: 50 DPRL-----EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME---- 100
+ P++V Y A+++A ++ ++ A + + + +G P+ TY +++
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCK 597
Query: 101 ---VMLACGKYNLV--------YEFFRKVQKSYI--PNALAYKVLVNTLWREGKTDEAVS 147
+ AC Y + + + K+ I PN Y LV+ L + K EA
Sbjct: 598 SGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARD 657
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
++ M G + +Y L C GK +EA M K+ + P V +Y+ LI
Sbjct: 658 LLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLF 717
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
+ A + ++M +N C+PN++ M+ + G +EA +L M E H
Sbjct: 718 KDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCH---- 773
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDD-LELV 299
P++ T+ M+D + D LEL+
Sbjct: 774 --------PNVVTYTAMIDGFGKAGKVDKCLELM 799
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 102/220 (46%), Gaps = 16/220 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y ++ L +A +KE D++D M EP+ +VY+A++
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSV---------------EGCEPNHIVYDALI 678
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYI 123
+ + + + A V ++ ++G P+ TY +++ + + +L + R ++ S
Sbjct: 679 DGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCA 738
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y +++ L + GKTDEA + ME +G + Y + AGK ++ L
Sbjct: 739 PNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLEL 798
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
M ++ P V+Y LI C +G + +A + ++MK
Sbjct: 799 MRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMK 838
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 131/318 (41%), Gaps = 34/318 (10%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD Y+ V+ + + AF + +++K P TY ++++ G ++
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKW 537
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F + V+ PN + Y L++ + K A E M G + + Y L C
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCK 597
Query: 174 AGKCEEA------------LMQMDKICKVAN----KPLVVSYTGLIQACLDSGNIQNAAY 217
+G+ E+A + +D K+ + P + +Y L+ + ++ A
Sbjct: 598 SGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARD 657
Query: 218 IFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
+ + M C PN + + ++ + + G +EA +F +M+E R Y P+
Sbjct: 658 LLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSE------RGYG------PN 705
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLE 332
+YT+++++D +KR D V RML + N + MI + GK + L+
Sbjct: 706 VYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMS 765
Query: 333 ITWEHLARADRITPPALI 350
+ E + +T A+I
Sbjct: 766 MMEEKGCHPNVVTYTAMI 783
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 88/200 (44%), Gaps = 5/200 (2%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N ++ C R W A L +LK G KPS TY ++ V L + + Y R++
Sbjct: 201 NVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSD 260
Query: 121 S-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
S + + V+ L + G+ EA++ +E E + +Y + LC A EE
Sbjct: 261 SGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFK---LDTVIYTQMISGLCEASLFEE 317
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A+ + ++ + P VV+Y L+ CL + I + M C P+ N ++
Sbjct: 318 AMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIH 377
Query: 239 AYLEHGLFEEAMKLFQEMAE 258
AY G + A KL ++M +
Sbjct: 378 AYCRSGDYSYAYKLLKKMGD 397
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 51/258 (19%), Positives = 108/258 (41%), Gaps = 27/258 (10%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S P+ + Y + L + G E + ++ M + P++V Y
Sbjct: 736 SCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMME---------------EKGCHPNVVTYT 780
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
A+++ + + + +++Q+ +G P+ TY +++ A G + ++ +++++
Sbjct: 781 AMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQT 840
Query: 122 YIPNALA-YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
Y P +A Y+ ++ RE ++ ++++ V Y L C AG+ E A
Sbjct: 841 YWPKHMAGYRKVIEGFNREFII--SLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELA 898
Query: 181 L-----MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCN 234
L M A+K L Y+ LI++ + + A ++ M K P L
Sbjct: 899 LELHKEMSSCTSYSAADKDL---YSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFF 955
Query: 235 IMVKAYLEHGLFEEAMKL 252
+VK + +EEA++L
Sbjct: 956 YLVKGLIRINRWEEALQL 973
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 44/223 (19%), Positives = 84/223 (37%), Gaps = 51/223 (22%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ V Y ++ G+AG + + ++ MR + K P+ V Y +
Sbjct: 773 HPNVVTYTAMIDGFGKAGKVDKCLEL---MRQMGAKG------------CAPNFVTYRVL 817
Query: 64 LNACVR--------------------------RKQWEG-------AFWVLQQLKQQGQKP 90
+N C RK EG + +L ++ + P
Sbjct: 818 INHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVP 877
Query: 91 SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNAL---AYKVLVNTLWREGKTDEAVS 147
Y ++++ G+ L E +++ +A Y L+ +L K D+A
Sbjct: 878 IIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFE 937
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
DM +RG + ++++ L + L + EEAL D IC++
Sbjct: 938 LYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSDCICQM 980
>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 935
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 135/349 (38%), Gaps = 68/349 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ + G I+E ++D M + PDI YNA++
Sbjct: 382 PNVVVYSTLIMGYASEGRIEEARRLLDGMSC---------------SGVAPDIFCYNAII 426
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + E A L +++ +G KP A T+G + GK ++F + + +
Sbjct: 427 SCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLM 486
Query: 124 PNALAYKVLVNT-----------------------------------LWREGKTDEAVSA 148
PN Y VL+N L + G+ EA+
Sbjct: 487 PNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKV 546
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+++ +G+V Y L C G+ E+A D++C P + Y L+
Sbjct: 547 FSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCK 606
Query: 209 SGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
SG+IQ A +F+ M + P+ VT + M+ Y + EA LF EM
Sbjct: 607 SGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMP---------- 656
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG----LHFNA 312
KG V P + +N ++ C E + +++ ML G L FN
Sbjct: 657 -SKG-VQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNT 703
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/344 (19%), Positives = 130/344 (37%), Gaps = 33/344 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLERWDPR 52
PD V + + + + G + E D M L FK G L
Sbjct: 452 PDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSI 511
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
PD+ +A ++ ++ + + A V +LK++G P TY ++
Sbjct: 512 FRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCK 571
Query: 105 CGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ +E ++ K PN Y LV+ L + G A + M +G+ +
Sbjct: 572 QGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVT 631
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + C + EA ++ +P Y L+ C G+++ A +F +M
Sbjct: 632 YSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREML 691
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
++ N ++ Y + +EA +LFQEM ++PD T+ T+
Sbjct: 692 QKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQ------------IMPDHVTYTTV 739
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
+D + ++ L++K M L + + ++ ++ G+
Sbjct: 740 IDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQ 783
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 76/342 (22%), Positives = 148/342 (43%), Gaps = 29/342 (8%)
Query: 46 LERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L+ + R L P V Y A++N K A +L+++ G KP+ Y ++ +
Sbjct: 337 LDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYAS 396
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ + S + P+ Y +++ L + GK +EA + + +++ RG+ A
Sbjct: 397 EGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVT 456
Query: 164 YYDLARCLCSAGKCEEALMQMDKICK---VANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
+ GK EA D++ + N PL YT LI +GN+ A IF
Sbjct: 457 FGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPL---YTVLINGHFKAGNLMEALSIFR 513
Query: 221 QMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
+ P++ TC+ + L++G +EA+K+F E+ E KGLV PD++T
Sbjct: 514 HLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKE-----------KGLV-PDVFT 561
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLEITW 335
+++++ + + ++ M G+ N + ++ ++G ++ L +
Sbjct: 562 YSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMP 621
Query: 336 EHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSG 377
E D +T +I + +C ++++ A S P G
Sbjct: 622 EKGLEPDSVTYSTMI-DGYC---KSENVAEAFSLFHEMPSKG 659
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 135/339 (39%), Gaps = 35/339 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T Y I L +A + E + M+ KTG L+PD +A++
Sbjct: 207 PNTYTYTIITAGLCRAKRMNEAKLTFEEMQ-------KTG--------LKPDYNACSALI 251
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ +R + + + G + TY +++ + GK E + +
Sbjct: 252 DGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCK 311
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN+ + +L+ RE A+ +++ME+R +V SA Y + LC A
Sbjct: 312 PNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKL 371
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS---PNLVTCNIMVKAY 240
++K+ KP VV Y+ LI G I+ A + + M CS P++ N ++
Sbjct: 372 LEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMS--CSGVAPDIFCYNAIISCL 429
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ G EEA E+ +GL PD TF + + + + +
Sbjct: 430 SKAGKMEEASTYLLEI-----------QGRGLK-PDAVTFGAFILGYSKTGKMTEAAKYF 477
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHL 338
ML HGL N + +I +AG + E L I + HL
Sbjct: 478 DEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSI-FRHL 515
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/274 (20%), Positives = 111/274 (40%), Gaps = 21/274 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERW--- 49
PD Y S+ + G +++ F++ D M +L K+G ++R
Sbjct: 557 PDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKL 616
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ LEPD V Y+ +++ + + AF + ++ +G +P + Y ++
Sbjct: 617 FDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCK 676
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G FR++ + L++ L++ + K EA ++M + I+ Y
Sbjct: 677 EGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTY 736
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-K 223
+ C AGK EEA + ++ + V+YT L+ G +F +M
Sbjct: 737 TTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVA 796
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
P+ VT +++ A+ + EA KL E+
Sbjct: 797 KGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVV 830
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/286 (19%), Positives = 113/286 (39%), Gaps = 51/286 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD+V Y ++ ++ ++ E F + M P K ++P VYNA++
Sbjct: 627 PDSVTYSTMIDGYCKSENVAEAFSLFHEM---PSKG------------VQPHSFVYNALV 671
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ C + E A + +++ Q+G + + L+ +C F + K +P
Sbjct: 672 HGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMP 731
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ + Y +++ + GK +EA ++M+ R ++ Y L G+ E
Sbjct: 732 DHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALF 791
Query: 185 DKICKVANKPLVVSYTGLIQA---------------------CLDSGNIQN--------- 214
+K+ KP V+Y +I A L G I +
Sbjct: 792 EKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKR 851
Query: 215 -----AAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
A+ + ++M P+L C+ +V+++ E G +EA ++F+
Sbjct: 852 EDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFE 897
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 119/278 (42%), Gaps = 20/278 (7%)
Query: 80 LQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWR 138
L+ + ++G P+ TY ++ + + N F ++QK+ + P+ A L++ R
Sbjct: 197 LRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMR 256
Query: 139 EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
EG DE + + M GI + Y L LC GK E+A + + + KP +
Sbjct: 257 EGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRT 316
Query: 199 YTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
+ LI+ N+ A + ++M K P+ V+ M+ A KL ++M
Sbjct: 317 FCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMT 376
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
+ P++ ++T++ A+E R ++ + M G+ + +
Sbjct: 377 FSG------------LKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNA 424
Query: 318 MILDASRAGKVE-----LLEITWEHLARADRITPPALI 350
+I S+AGK+E LLEI L + D +T A I
Sbjct: 425 IISCLSKAGKMEEASTYLLEIQGRGL-KPDAVTFGAFI 461
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 5/179 (2%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + L D V Y +++ + Q F + +++ +G KP TYGLV + C
Sbjct: 758 EMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLV--IYAHCK 815
Query: 107 KYNLVYEFFRK---VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
+ NLV F + V K + + +L+ L + EA +++M G+ S A
Sbjct: 816 EDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAA 875
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
L R AGK +EA + + + P + L+ L+ + ++A + Q+
Sbjct: 876 CSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQL 934
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 57/287 (19%), Positives = 113/287 (39%), Gaps = 57/287 (19%)
Query: 127 LAYKVLVNTLWREGKTDEAVS------------------AVEDMERRGIVGSAALYYDLA 168
+ + +L+++ R G DEA + ++ M +G+V + Y +
Sbjct: 157 VVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLRSMGEKGLVPNTYTYTIIT 216
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP 228
LC A + EA + +++ K KP + + LI + G+I I + M + P
Sbjct: 217 AGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIP 276
Query: 229 -NLVTCNIMVKAYLEHGLFEEAMKLFQEMAE------------------DSNHINR---- 265
NL+T N+++ + G E+A ++ + M +++ R
Sbjct: 277 INLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALEL 336
Query: 266 --EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDAS 323
E +K+ LV P ++ M++ K + ++M GL N + +I+ +
Sbjct: 337 LDEMEKRNLV-PSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYA 395
Query: 324 RAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCL 370
G++E E D ++ + + FC Y + ISCL
Sbjct: 396 SEGRIE------EARRLLDGMSCSGVAPDIFC-------YNAIISCL 429
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN-------REYDKKGLVIP 275
+N+ + V +I++ +Y G+ +EA +F DS I+ R +KGLV P
Sbjct: 149 RNYGGSSPVVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLRSMGEKGLV-P 207
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+ YT+ + KR ++ +L ++ M GL
Sbjct: 208 NTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGL 240
>gi|15236834|ref|NP_194398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334186944|ref|NP_001190849.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213515|sp|Q9SZ10.1|PP338_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g26680, mitochondrial; Flags: Precursor
gi|4455191|emb|CAB36514.1| putative protein [Arabidopsis thaliana]
gi|7269520|emb|CAB79523.1| putative protein [Arabidopsis thaliana]
gi|332659836|gb|AEE85236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332659837|gb|AEE85237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 521
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 123/283 (43%), Gaps = 31/283 (10%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
V++++ K++ A Q+K G P+ + M +L G+ ++ F+R++
Sbjct: 170 VFDSLFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREM 229
Query: 119 QKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
++ I PN ++++ R GK D+ + ++DMER G + Y L C G
Sbjct: 230 RRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLL 289
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIM 236
AL + + K +P VV++ LI + +Q A+ +F +MK +PN VT N +
Sbjct: 290 SSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTL 349
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINR--------------------------EYDKK 270
+ Y + G E A + +++M N I R E DK+
Sbjct: 350 INGYSQQGDHEMAFRFYEDMV--CNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKE 407
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK 313
LV P+ TF+ ++ K D +YK M+ G H N +
Sbjct: 408 NLV-PNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQ 449
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 85/205 (41%), Gaps = 2/205 (0%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
V YN ++ + A + + + G +P+ T+ ++ K + F +
Sbjct: 274 VSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGE 333
Query: 118 VQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
++ + PN + Y L+N ++G + A EDM GI Y L LC K
Sbjct: 334 MKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAK 393
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNI 235
+A + ++ K P +++ LI N ++ M ++ C PN T N+
Sbjct: 394 TRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNM 453
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDS 260
+V A+ + F+ A ++ +EM S
Sbjct: 454 LVSAFCRNEDFDGASQVLREMVRRS 478
>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
Length = 695
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 99/434 (22%), Positives = 173/434 (39%), Gaps = 43/434 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +Y + L ++G + V D M D + P+ + YN ++
Sbjct: 193 PDAFSYNVVIAGLWRSGKGSDALKVFDEM---------------VDRGVAPNQITYNTMI 237
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ V+ E F + Q+ Q G+KP+ TY +++ + G+ + ++ S +
Sbjct: 238 DGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSML 297
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y +L + L R G + +S + ++G++ A L LC GK +A
Sbjct: 298 PDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQV 357
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
++ + P Y LI ++Q A IF QMK+ P+ +T N ++ +
Sbjct: 358 LEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCK 417
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ EA L EM +K V P + TFNT++DA + + V
Sbjct: 418 MEMITEAEDLVMEM------------EKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSD 465
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNR-LENK 361
M G+ N ++ + GK+ + + D + P A + + +E+
Sbjct: 466 MQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKD-VVPNAQVYNSIIDAYIESG 524
Query: 362 DYGSA---ISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNG 418
A + + S VS S F+ N LK +NSQ I E +LT +
Sbjct: 525 GTEQAFLLVEKMKSSGVSASI-FTYNLLLKGLCKNSQ-------IDEAEELIYNLTNQGL 576
Query: 419 SPYPVLQN-LISSC 431
P V N +IS+C
Sbjct: 577 RPDVVSYNTIISAC 590
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/311 (20%), Positives = 144/311 (46%), Gaps = 18/311 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P +YN ++N + + +GAF + +Q+K + +P TY ++ +
Sbjct: 366 LVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAE 425
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +++KS + P+ + L++ R G+ ++ + + DM+ +GI + + + +
Sbjct: 426 DLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAF 485
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C GK EA+ +D + P Y +I A ++SG + A + +MK+ S ++
Sbjct: 486 CKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASI 545
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T N+++K ++ +EA +L + +GL PD+ ++NT++ AC +
Sbjct: 546 FTYNLLLKGLCKNSQIDEAEELIYNLT-----------NQGLR-PDVVSYNTIISACCNK 593
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
D + + M + + + + ++ AG+V +E ++H+ + + P + I
Sbjct: 594 GDTDRALELLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKN-VEPSSSI 652
Query: 351 KERFCNRLENK 361
+ R EN+
Sbjct: 653 ---YGTRCENE 660
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 126/301 (41%), Gaps = 35/301 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ L + I E D++ M K+G ++P + +N ++
Sbjct: 403 PDHITYNALINGLCKMEMITEAEDLVMEME-------KSG--------VDPSVETFNTLI 447
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEFFRKVQKSYI 123
+A R Q E F VL ++ +G K + ++G V++ GK V + K +
Sbjct: 448 DAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVV 507
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PNA Y +++ G T++A VE M+ G+ S Y L + LC + +EA
Sbjct: 508 PNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEEL 567
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ + +P VVSY +I AC + G+ A + +M + P L T + ++ A
Sbjct: 568 IYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSALGS 627
Query: 243 HGLFEEAMKLFQEM----AEDSNHI--------------NREYDKKGLVIPDIYTFNTML 284
G + L+Q M E S+ I +E +KG+ D N L
Sbjct: 628 AGRVHDMECLYQHMVHKNVEPSSSIYGTRCENESKVASLKKEMSEKGIAFDDTERTNLEL 687
Query: 285 D 285
D
Sbjct: 688 D 688
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 101/244 (41%), Gaps = 19/244 (7%)
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY---IPN 125
R AF +L G +P + ++ +A G + R++ +S P+
Sbjct: 138 RHADVRAAFGLLVA---AGARPDTFAWNKAVQACVAAGDLDEALAMLRRMGRSEGAPPPD 194
Query: 126 ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMD 185
A +Y V++ LWR GK +A+ ++M RG+ + Y + G E D
Sbjct: 195 AFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRD 254
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEHG 244
++ + KP VV+Y L+ +G + + ++M ++ P+ T +I+ G
Sbjct: 255 QMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTG 314
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
+ LF E KKG++I YT + +L+ + + E V + ++
Sbjct: 315 DSRTMLSLFGESL-----------KKGVII-GAYTCSILLNGLCKDGKVAKAEQVLEMLV 362
Query: 305 HHGL 308
H GL
Sbjct: 363 HTGL 366
>gi|255660964|gb|ACU25651.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 376
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 137/286 (47%), Gaps = 15/286 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + ++ PD VVYNA+LN R + + F + + + +G + S +++ ++M + G
Sbjct: 15 EIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNG 73
Query: 107 KYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K + V + +++S ++ +++ Y +LV+ + G D+++ +E E++G V A Y
Sbjct: 74 KVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYS 133
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+ LC + AL + + K KP + Y LI + + ++A +F +M
Sbjct: 134 AMINGLCKEANLDRALYVLTGMIKSGCKPNIHVYNTLINGLVGASKFEDAIRVFREMGTM 193
Query: 226 -CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
CSP ++T N ++ + +F EA L +E+ + KGL P + T++ ++
Sbjct: 194 HCSPTIITYNTLISGLCKKEMFGEAYNLVKELLD-----------KGLD-PGVITYSMLM 241
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ + + ++ ++ G + + H +I GK++L
Sbjct: 242 KGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQL 287
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 124/292 (42%), Gaps = 29/292 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D++ Y + + G+I + S+ L + K G L D Y+A++N
Sbjct: 93 DSITYGILVHGFCKNGYIDK------SLHVLEMAEQKGGVL---------DAFAYSAMIN 137
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ + A +VL + + G KP+ Y ++ ++ K+ FR++ + P
Sbjct: 138 GLCKEANLDRALYVLTGMIKSGCKPNIHVYNTLINGLVGASKFEDAIRVFREMGTMHCSP 197
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ Y L++ L ++ EA + V+++ +G+ Y L + LC K E AL
Sbjct: 198 TIITYNTLISGLCKKEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLW 257
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
+++ KP V + LI G +Q A ++ M + C+PNLV+ N +++ + +
Sbjct: 258 NQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRRKCAPNLVSHNTLMEGFYKD 317
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
G A+ ++ + + + PDI ++N L + R D
Sbjct: 318 GDIRNALVIWARILRNG------------LEPDIISYNITLKGLCSCNRISD 357
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/137 (19%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D L+P ++ Y+ ++ + E A + Q+ +G KP + +++ + + G
Sbjct: 224 ELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVG 283
Query: 107 KYNLVYE-FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K L +F ++ PN +++ L+ +++G A+ + R G+ Y
Sbjct: 284 KMQLALSLYFDMNRRKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343
Query: 166 DLARCLCSAGKCEEALM 182
+ LCS + +A++
Sbjct: 344 ITLKGLCSCNRISDAIL 360
>gi|357166198|ref|XP_003580632.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Brachypodium distachyon]
Length = 644
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 140/309 (45%), Gaps = 33/309 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y + L AG + +V D+M + + R+ PD+V YN ++
Sbjct: 206 PSRVTYNCLLDGLANAGLLDTAINVFDAMST--------------EDRVRPDVVSYNILI 251
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
R + + A L +++Q + P TY +M++ + G ++ F+++++ +
Sbjct: 252 KGYCRAGRAQDAMARLAHMREQAELSPDKVTYLTLMQLHYSEGTFSQCIRLFQEMEEMGM 311
Query: 124 PNAL---AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ AY +++ L +EGK E ++ E M + G AA+Y L + G+ EA
Sbjct: 312 GKDIPQHAYVLVIGALCKEGKPFEGLAVFERMLKSGYPAKAAMYTALIDTMGKFGRENEA 371
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACL-DSGNIQNAAYIF-NQMKNFCSPNLVTCNIMVK 238
++ +++ K + L G+I CL G + A F N ++ + N + ++
Sbjct: 372 MLLFERM-KASGLELDAITYGVIVNCLCRFGKLDEAILCFRNCVEKGIAVNAIFYTSLID 430
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ + G+ ++A +LF+EM KG V PD Y +N ++D A R DD
Sbjct: 431 GFGKAGMVDQAQELFEEM-----------KVKGFV-PDSYCYNVLIDGLAKAGRLDDACA 478
Query: 299 VYKRMLHHG 307
+YKRM G
Sbjct: 479 LYKRMEDDG 487
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 106/264 (40%), Gaps = 17/264 (6%)
Query: 2 SSYPDTVA-YRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
S YP A Y ++ T+G+ G E + + M++ +G LE D + Y
Sbjct: 346 SGYPAKAAMYTALIDTMGKFGRENEAMLLFERMKA-------SG--------LELDAITY 390
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ- 119
++N R + + A + ++G +A Y +++ G + E F +++
Sbjct: 391 GVIVNCLCRFGKLDEAILCFRNCVEKGIAVNAIFYTSLIDGFGKAGMVDQAQELFEEMKV 450
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K ++P++ Y VL++ L + G+ D+A + + ME G + Y + L K EE
Sbjct: 451 KGFVPDSYCYNVLIDGLAKAGRLDDACALYKRMEDDGCDQTVYTYTIIIDGLFKKHKNEE 510
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKA 239
A+ + + P ++ SG A I +++ M+
Sbjct: 511 AIKFWNTMIDKGITPTAAAFRTFANGLCLSGKFSRACRILDELAPMGVIPETAHEDMINV 570
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHI 263
+ G F++A KL + + I
Sbjct: 571 LCKAGRFKQACKLADGIVQKGREI 594
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 83/199 (41%), Gaps = 13/199 (6%)
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA 191
L+ +L G DE + A M G+ S Y L L +AG + A+ D +
Sbjct: 179 LIRSLAALGLADELLWAWSAMRLAGVEPSRVTYNCLLDGLANAGLLDTAINVFDAMSTED 238
Query: 192 N-KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC--SPNLVTCNIMVKAYLEHGLFEE 248
+P VVSY LI+ +G Q+A M+ SP+ VT +++ + G F +
Sbjct: 239 RVRPDVVSYNILIKGYCRAGRAQDAMARLAHMREQAELSPDKVTYLTLMQLHYSEGTFSQ 298
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
++LFQEM E G IP + C K ++ L V++RML G
Sbjct: 299 CIRLFQEMEEMG---------MGKDIPQHAYVLVIGALCKEGKPFEGLA-VFERMLKSGY 348
Query: 309 HFNAKRHLRMILDASRAGK 327
A + +I + G+
Sbjct: 349 PAKAAMYTALIDTMGKFGR 367
>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
Length = 814
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 116/256 (45%), Gaps = 14/256 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V Y+ V++ + A + +++ Q+G P TY V+ + + F
Sbjct: 217 PDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAF 276
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
R+ V K +PN Y L+ G+ EAV ++M R I+ L LC
Sbjct: 277 LRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 336
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
GK +EA D + P V SYT ++ G + + +F+ M + +P++ T
Sbjct: 337 YGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYT 396
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N+++KAY G+ ++AM +F EM R++ K PD+ T+ T++ A +
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEM--------RDHGVK----PDVVTYRTVIAALCRIGK 444
Query: 293 WDDLELVYKRMLHHGL 308
DD + +M+ G+
Sbjct: 445 MDDAMEKFNQMIDQGV 460
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/332 (21%), Positives = 125/332 (37%), Gaps = 34/332 (10%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSM----------------RSLPKKKFKTGT 45
S PD V + +L + G IKE DV D+M K
Sbjct: 319 SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDM 378
Query: 46 LERWDPRL----EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
+ +D L PDI +N ++ A + A + +++ G KP TY V+
Sbjct: 379 TDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAA 438
Query: 102 MLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ GK + E F + + + P+ AY L+ G +A + ++ G+
Sbjct: 439 LCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLD 498
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
+ + LC G+ +A D V P V Y+ L+ G ++ A +F+
Sbjct: 499 IVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFD 558
Query: 221 QMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
M + PN V +V Y + G +E + LF+EM + KG + P
Sbjct: 559 AMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQ-----------KG-IKPSTIL 606
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
+N ++D R ++ + M G+ N
Sbjct: 607 YNIIIDGLFEAGRTVPAKVKFHEMTESGIAMN 638
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 78/366 (21%), Positives = 148/366 (40%), Gaps = 44/366 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKK-----------------KFKTG 44
PD V YR++ L + G + + + + M P K K K
Sbjct: 427 PDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKEL 486
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E + + DIV +++++N + + A + G P+A Y ++M+
Sbjct: 487 ISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCL 546
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK F + + I PN + Y LVN + G+ DE +S +M ++GI S L
Sbjct: 547 VGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTIL 606
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + L AG+ A ++ ++ + +Y +++ + A ++F +++
Sbjct: 607 YNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELR 666
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
N++T N M+ + EEA LF ++ + GLV P + T++
Sbjct: 667 AMNVKINIITLNTMIAGMFQTRRVEEAKDLFASIS-----------RSGLV-PCVVTYSI 714
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAK------RHLRMILDASRAG----KVELLE 332
M+ E ++ E ++ M + G +++ R L + RAG K++
Sbjct: 715 MITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERN 774
Query: 333 ITWEHL 338
+ EHL
Sbjct: 775 FSLEHL 780
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/343 (19%), Positives = 131/343 (38%), Gaps = 64/343 (18%)
Query: 51 PR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
PR L P Y +++ C R + E A QL + G + + +++ + +
Sbjct: 104 PRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTD 163
Query: 110 LVYEFF--RKVQKSYIPNALAYKVLVNTL------------------------------- 136
+ R + +P+ +Y +L+ +L
Sbjct: 164 EALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYS 223
Query: 137 ------WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
++EG ++A ++M +RGI Y + LC A ++A + ++
Sbjct: 224 TVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNK 283
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEHGLFEEA 249
P +Y LI +G + A +F +M+ P++VT ++++ + ++G +EA
Sbjct: 284 GVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEA 343
Query: 250 MKLFQEMAEDSNHIN--------REYDKKGLVI---------------PDIYTFNTMLDA 286
+F MA + N Y KG ++ PDIYTFN ++ A
Sbjct: 344 RDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKA 403
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
A D +++ M HG+ + + +I R GK++
Sbjct: 404 YANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMD 446
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/345 (17%), Positives = 132/345 (38%), Gaps = 55/345 (15%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V + ++ + + + + A V + +GQ P+ +Y +++ G + +
Sbjct: 322 PDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDL 381
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F + I P+ + VL+ G D+A+ +M G+ Y + LC
Sbjct: 382 FDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCR 441
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ------------ 221
GK ++A+ + +++ P +Y LIQ G++ A + ++
Sbjct: 442 IGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVF 501
Query: 222 ----MKNFCS--------------------PNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
+ N C P V ++++ Y G E+A+++F M
Sbjct: 502 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMV 561
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
+ P+ + T+++ R D+ +++ ML G+ + +
Sbjct: 562 SAG------------IEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNI 609
Query: 318 MILDASRAG-----KVELLEITWEHLARADRITPPALIKERFCNR 357
+I AG KV+ E+T +A ++ T +++ F NR
Sbjct: 610 IIDGLFEAGRTVPAKVKFHEMTESGIA-MNKCTYNIVLRGLFKNR 653
>gi|242032435|ref|XP_002463612.1| hypothetical protein SORBIDRAFT_01g002930 [Sorghum bicolor]
gi|241917466|gb|EER90610.1| hypothetical protein SORBIDRAFT_01g002930 [Sorghum bicolor]
Length = 638
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 149/349 (42%), Gaps = 33/349 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV+YR I AG++ + ++ M + D Y ++
Sbjct: 54 PDTVSYRYIVDAFASAGNLSRVAELFSEMAVMGNTA---------------DASAYLGLM 98
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
A R A VL+Q++ G P+A TY +++++ G+++ V E FR+++ + P
Sbjct: 99 EAHTRVGATAEAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRELFREMRTAVPP 158
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ Y VL G E V DM G+ ++ G E+A +
Sbjct: 159 DTATYNVLFRVYGDGGFFKEVVELFHDMLETGVEPDMVTCENVMAACGRGGLHEDAREVL 218
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEH 243
+ + + P +YTGL++A + + A FN M S P L T N + AY
Sbjct: 219 EYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNTLAFAYARG 278
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
GLF+EA +F M+ ++ I + D +F+ +++A + DD Y M
Sbjct: 279 GLFQEAEAIFSRMSNNAG-IQKNKD----------SFDALIEAYCQGAQLDDAVKAYMEM 327
Query: 304 LHHGLHFNA-KRHLRMILDA-SRAGKVELLEITWEHLARADRITPPALI 350
FN +R L +L+A AG ++ + +E L + +T P++I
Sbjct: 328 RKS--RFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSS--VTLPSII 372
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 117/279 (41%), Gaps = 28/279 (10%)
Query: 51 PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
P + PD+ YN +L A R + + +L+ + + G P +Y +++ + G +
Sbjct: 15 PSVRPDLTTYNTLLAAAAVRSLADQSEMLLRTMLEAGVSPDTVSYRYIVDAFASAGNLSR 74
Query: 111 VYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
V E F ++ +A AY L+ R G T EAV+ + M+ G +AA Y L
Sbjct: 75 VAELFSEMAVMGNTADASAYLGLMEAHTRVGATAEAVAVLRQMQADGCAPTAATYRVLLD 134
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSP 228
G+ + + ++ + + A P +Y L + D G + +F+ M + P
Sbjct: 135 LYGRQGRF-DGVRELFREMRTAVPPDTATYNVLFRVYGDGGFFKEVVELFHDMLETGVEP 193
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV--------------- 273
++VTC ++ A GL E+A ++ + M + + GLV
Sbjct: 194 DMVTCENVMAACGRGGLHEDAREVLEYMTRE-GMVPTADAYTGLVEALGHAAMYEEAYVA 252
Query: 274 ---------IPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
+P + T+NT+ A A + + E ++ RM
Sbjct: 253 FNMMTEIGSLPTLETYNTLAFAYARGGLFQEAEAIFSRM 291
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 72/202 (35%), Gaps = 14/202 (6%)
Query: 109 NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
L E S P+ Y L+ D++ + M G+ Y +
Sbjct: 4 GLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLRTMLEAGVSPDTVSYRYIV 63
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCS 227
SAG ++ + N +Y GL++A G A + QM+ + C+
Sbjct: 64 DAFASAGNLSRVAELFSEMAVMGNTADASAYLGLMEAHTRVGATAEAVAVLRQMQADGCA 123
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P T +++ Y G F+ +LF+EM + V PD T+N +
Sbjct: 124 PTAATYRVLLDLYGRQGRFDGVRELFREM-------------RTAVPPDTATYNVLFRVY 170
Query: 288 AAEKRWDDLELVYKRMLHHGLH 309
+ ++ ++ ML G+
Sbjct: 171 GDGGFFKEVVELFHDMLETGVE 192
>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 137/321 (42%), Gaps = 43/321 (13%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D L P++V+Y +++ C + E A ++ + G + T+ +++ + G
Sbjct: 190 DMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKK 249
Query: 110 LVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
++ F K++ PN Y L+N EGK A ++M RG+ + Y L
Sbjct: 250 DGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLI 309
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCS 227
+C + EA +D++ K A P +++Y LI D GN+ A+ + +Q+K N S
Sbjct: 310 GGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLS 369
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEM------------------------AEDSNHI 263
P+LVT NI+++ Y + G ++ L +EM E + I
Sbjct: 370 PSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQI 429
Query: 264 NREYDKKGLVIPDIYTFNTMLDACA---------------AEKRWDDLELVYKRMLH-HG 307
+K GLV PD+Y + ++ E + +++Y M+H +
Sbjct: 430 YSSMEKFGLV-PDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYC 488
Query: 308 LHFNAKRHLRMILDASRAGKV 328
N+ R LR++ + G V
Sbjct: 489 KEDNSYRALRLLREMEAKGLV 509
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 87/191 (45%), Gaps = 16/191 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y + +AG+ K + D+ M + P V ++
Sbjct: 370 PSLVTYNILIEGYSKAGNWKGVADLAREMEG---------------RGISPSKVTCTVLI 414
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+A VR ++ E AF + +++ G P YG+++ + G + FR + + ++
Sbjct: 415 DAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVE 474
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y +++ +E + A+ + +ME +G+V + A Y + LC GK EEA +
Sbjct: 475 PSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVL 534
Query: 184 MDKICKVANKP 194
+DK+ ++ KP
Sbjct: 535 LDKMIELQLKP 545
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 113/277 (40%), Gaps = 22/277 (7%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMR--SLPKKKFKTGTL-------ER-WDPR- 52
+P+ Y + G I FD+ D MR + TL ER W+
Sbjct: 264 FPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEK 323
Query: 53 ---------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
+ P+++ YN ++ + A +L QLK G PS TY +++E
Sbjct: 324 LVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYS 383
Query: 104 ACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G + V + R+++ I P+ + VL++ R + ++A ME+ G+V
Sbjct: 384 KAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVY 443
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+Y L LC G +E+ + ++ +P V Y +I N A + +M
Sbjct: 444 VYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREM 503
Query: 223 K-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
+ PN+ + + ++ + G +EEA L +M E
Sbjct: 504 EAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIE 540
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/244 (19%), Positives = 105/244 (43%), Gaps = 14/244 (5%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
++Y +++NA ++ + + A ++ +G + ++ ++ + + FF +
Sbjct: 94 LLYESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIFNSLLGSLVRSNCFEKAWLFFNE 153
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+++ + ++ +++ G D++ + ++ G+ + +Y L C G
Sbjct: 154 LKERVKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDI 213
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIM 236
E A + DK+ ++ ++T LI G ++ +F +MK N PNL T N +
Sbjct: 214 ERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCL 273
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDD 295
+ Y G A LF EM E V ++ T+NT++ C E+ W+
Sbjct: 274 MNEYCGEGKICRAFDLFDEMRERG------------VEANVVTYNTLIGGMCREERVWEA 321
Query: 296 LELV 299
+LV
Sbjct: 322 EKLV 325
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/266 (19%), Positives = 103/266 (38%), Gaps = 53/266 (19%)
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV----------GS-------- 160
Q + AL Y+ ++N + D+A+ +M +G+V GS
Sbjct: 86 QNPSMTTALLYESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIFNSLLGSLVRSNCFE 145
Query: 161 -AALYYD---------------LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204
A L+++ + + C G +++ + + + P VV YT LI
Sbjct: 146 KAWLFFNELKERVKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLID 205
Query: 205 ACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
C +G+I+ A F++M N T +++ + GL ++ LF++M +
Sbjct: 206 GCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKING--- 262
Query: 264 NREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDAS 323
+ P++YT+N +++ E + ++ M G+ N + +I
Sbjct: 263 ---------LFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMC 313
Query: 324 RAGKVELLEITWEHLARADRITPPAL 349
R +V WE D++ A+
Sbjct: 314 REERV------WEAEKLVDQMKKAAV 333
>gi|145524846|ref|XP_001448245.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415789|emb|CAK80848.1| unnamed protein product [Paramecium tetraurelia]
Length = 967
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 146/322 (45%), Gaps = 61/322 (18%)
Query: 4 YPDTVAYRSIAVTLGQAGHIK--ELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
+PD Y SI V + H EL I + + + TG + +PD ++YN
Sbjct: 477 FPDNFTY-SILVNGIKTNHSNRDELLRAITLLEQIQE----TG-------QFKPDEILYN 524
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
++++ACV+ + + + +++K + +PS+ TYG++++ N + F ++++
Sbjct: 525 SLIDACVKFNEIQKGMQLFKEMKNKSIEPSSVTYGILIKAYGKMNDLNGAFRMFEEMKQK 584
Query: 122 YIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
IP N + Y LV+ R + D+A+ +E M+ + + + LY + + C + EEA
Sbjct: 585 KIPINDVTYGCLVDACVRNDRLDQALQFIEQMKSQNLPINTVLYTTIIKGFCKLNQTEEA 644
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240
+ Y L++ QN PNL+T N ++
Sbjct: 645 M----------------KYFSLMK--------QNQR---------TYPNLITYNSLLDGL 671
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+++GL +A KLFQE+ E + + PD+ TF+T+L L
Sbjct: 672 VKNGLMNQADKLFQELVEST------------IKPDLITFSTLLKGHCRRGNMKRLNETV 719
Query: 301 KRMLHHGLHFNAKRHLRMILDA 322
+ MLH+ ++ + + L++IL++
Sbjct: 720 QTMLHYQINPD-ESLLQLILES 740
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/350 (22%), Positives = 144/350 (41%), Gaps = 62/350 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y + AG + F +++ M+ ++ D + YN ++
Sbjct: 371 PDQIIYNCLLDACINAGDLNRGFQLLNEMKQ--------------SQSIQLDEITYNTLI 416
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-- 122
C R+K+ A + +++KQ G KP+ ++ +++ + C K N+ + +F +++K Y
Sbjct: 417 KGCGRKKRLNEAISLFEEMKQIGIKPNRISFNSLLDSCVKCNKMNVAWRYFEEMRKQYGI 476
Query: 123 IPNALAYKVLVNTL-WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
P+ Y +LVN + DE + A+ +E+ G
Sbjct: 477 FPDNFTYSILVNGIKTNHSNRDELLRAITLLEQIQETGQF-------------------- 516
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAY 240
KP + Y LI AC+ IQ +F +MKN P+ VT I++KAY
Sbjct: 517 -----------KPDEILYNSLIDACVKFNEIQKGMQLFKEMKNKSIEPSSVTYGILIKAY 565
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ A ++F+EM + K + I D+ T+ ++DAC R D
Sbjct: 566 GKMNDLNGAFRMFEEMKQ-----------KKIPINDV-TYGCLVDACVRNDRLDQALQFI 613
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
++M L N + +I + + E + + L + ++ T P LI
Sbjct: 614 EQMKSQNLPINTVLYTTIIKGFCKLNQTE-EAMKYFSLMKQNQRTYPNLI 662
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/253 (19%), Positives = 108/253 (42%), Gaps = 20/253 (7%)
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
T R + +++P IV N +++ + Q + A+ + LK KP TY ++ +
Sbjct: 290 TFMRDNAKIQPTIVTINTMIDQYFKNNQKDKAWKTFENLKLTSTKPDNFTYTTLINGLKN 349
Query: 105 CGKYN--LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER-RGIVGSA 161
+ L ++ F + ++ P+ + Y L++ G + + +M++ + I
Sbjct: 350 SDNMDLRLAFQLFEEYKQYNQPDQIIYNCLLDACINAGDLNRGFQLLNEMKQSQSIQLDE 409
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L + + EA+ +++ ++ KP +S+ L+ +C+ + A F +
Sbjct: 410 ITYNTLIKGCGRKKRLNEAISLFEEMKQIGIKPNRISFNSLLDSCVKCNKMNVAWRYFEE 469
Query: 222 MKNFCS--PNLVTCNIMVKAY-LEHGLFEE---AMKLFQEMAEDSNHINREYDKKGLVIP 275
M+ P+ T +I+V H +E A+ L +++ E G P
Sbjct: 470 MRKQYGIFPDNFTYSILVNGIKTNHSNRDELLRAITLLEQIQE-----------TGQFKP 518
Query: 276 DIYTFNTMLDACA 288
D +N+++DAC
Sbjct: 519 DEILYNSLIDACV 531
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 22/186 (11%)
Query: 109 NLVYEFFR---KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
N + F R K+Q P + +++ ++ + D+A E+++ Y
Sbjct: 286 NFLLTFMRDNAKIQ----PTIVTINTMIDQYFKNNQKDKAWKTFENLKLTSTKPDNFTYT 341
Query: 166 DLARCLCSAGKCEEAL-MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
L L ++ + L Q+ + K N+P + Y L+ AC+++G++ + N+MK
Sbjct: 342 TLINGLKNSDNMDLRLAFQLFEEYKQYNQPDQIIYNCLLDACINAGDLNRGFQLLNEMKQ 401
Query: 225 FCSPNL--VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
S L +T N ++K EA+ LF+EM K+ + P+ +FN+
Sbjct: 402 SQSIQLDEITYNTLIKGCGRKKRLNEAISLFEEM------------KQIGIKPNRISFNS 449
Query: 283 MLDACA 288
+LD+C
Sbjct: 450 LLDSCV 455
>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
Length = 996
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 141/332 (42%), Gaps = 35/332 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
DTV Y + L +A +E D + MRS P++V Y +L
Sbjct: 298 DTVIYTQMISGLCEASLFEEAMDFLSRMRS---------------SSCIPNVVTYRILLC 342
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
C+R++Q +L + +G PS + ++ G Y+ Y+ +K+ P
Sbjct: 343 GCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQP 402
Query: 125 NALAYKVLVNTLWREGK------TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ Y +L+ + K + A A +M +V + +LARCLC AGK E
Sbjct: 403 GYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFE 462
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMV 237
+A + ++ P +Y+ +I ++ + NA +F +MK N P++ T I++
Sbjct: 463 KAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILI 522
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
++ + GL ++A K F EM D P++ T+ ++ A ++
Sbjct: 523 DSFCKVGLLQQARKWFDEMVRDG------------CAPNVVTYTALIHAYLKARKMSSAN 570
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+++ ML G N + +I ++G++E
Sbjct: 571 ELFEMMLSEGCIPNVVTYTALIDGHCKSGQIE 602
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/334 (22%), Positives = 135/334 (40%), Gaps = 51/334 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLE---RW 49
PDT Y + L A + F + + M+S L K G L+ +W
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKW 537
Query: 50 DPRL-----EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME---- 100
+ P++V Y A+++A ++ ++ A + + + +G P+ TY +++
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCK 597
Query: 101 ---VMLACGKYNLV--------YEFFRKVQKSYI--PNALAYKVLVNTLWREGKTDEAVS 147
+ AC Y + + + K+ I PN Y LV+ L + K EA
Sbjct: 598 SGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARD 657
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
++ M G + +Y L C GK +EA M K+ + P V +Y+ LI
Sbjct: 658 LLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLF 717
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
+ A + ++M +N C+PN++ M+ + G +EA +L M E H
Sbjct: 718 KDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCH---- 773
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDD-LELV 299
P++ T+ M+D + D LEL+
Sbjct: 774 --------PNVVTYTAMIDGFGKAGKVDKCLELM 799
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 102/220 (46%), Gaps = 16/220 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y ++ L +A +KE D++D M EP+ +VY+A++
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSV---------------EGCEPNHIVYDALI 678
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYI 123
+ + + + A V ++ ++G P+ TY +++ + + +L + R ++ S
Sbjct: 679 DGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCA 738
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y +++ L + GKTDEA + ME +G + Y + AGK ++ L
Sbjct: 739 PNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLEL 798
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
M ++ P V+Y LI C +G + +A + ++MK
Sbjct: 799 MRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMK 838
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 131/318 (41%), Gaps = 34/318 (10%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD Y+ V+ + + AF + +++K P TY ++++ G ++
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKW 537
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F + V+ PN + Y L++ + K A E M G + + Y L C
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCK 597
Query: 174 AGKCEEA------------LMQMDKICKVAN----KPLVVSYTGLIQACLDSGNIQNAAY 217
+G+ E+A + +D K+ + P + +Y L+ + ++ A
Sbjct: 598 SGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARD 657
Query: 218 IFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
+ + M C PN + + ++ + + G +EA +F +M+E R Y P+
Sbjct: 658 LLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSE------RGYG------PN 705
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLE 332
+YT+++++D +KR D V RML + N + MI + GK + L+
Sbjct: 706 VYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMS 765
Query: 333 ITWEHLARADRITPPALI 350
+ E + +T A+I
Sbjct: 766 MMEEKGCHPNVVTYTAMI 783
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 88/200 (44%), Gaps = 5/200 (2%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N ++ C R W A L +LK G KPS TY ++ V L + + Y R++
Sbjct: 201 NVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSD 260
Query: 121 S-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
S + + V+ L + G+ EA++ +E E + +Y + LC A EE
Sbjct: 261 SGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFK---LDTVIYTQMISGLCEASLFEE 317
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A+ + ++ + P VV+Y L+ CL + I + M C P+ N ++
Sbjct: 318 AMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIH 377
Query: 239 AYLEHGLFEEAMKLFQEMAE 258
AY G + A KL ++M +
Sbjct: 378 AYCRSGDYSYAYKLLKKMGD 397
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/258 (19%), Positives = 108/258 (41%), Gaps = 27/258 (10%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S P+ + Y + L + G E + ++ M + P++V Y
Sbjct: 736 SCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMME---------------EKGCHPNVVTYT 780
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
A+++ + + + +++Q+ +G P+ TY +++ A G + ++ +++++
Sbjct: 781 AMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQT 840
Query: 122 YIPNALA-YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
Y P +A Y+ ++ RE ++ ++++ V Y L C AG+ E A
Sbjct: 841 YWPKHMAGYRKVIEGFNREFII--SLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELA 898
Query: 181 L-----MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCN 234
L M A+K L Y+ LI++ + + A ++ M K P L
Sbjct: 899 LELHKEMSSCTSYSAADKDL---YSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFF 955
Query: 235 IMVKAYLEHGLFEEAMKL 252
+VK + +EEA++L
Sbjct: 956 YLVKGLIRINRWEEALQL 973
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 44/225 (19%), Positives = 85/225 (37%), Gaps = 51/225 (22%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ V Y ++ G+AG + + ++ MR + K P+ V Y +
Sbjct: 773 HPNVVTYTAMIDGFGKAGKVDKCLEL---MRQMGAKG------------CAPNFVTYRVL 817
Query: 64 LNACVR--------------------------RKQWEG-------AFWVLQQLKQQGQKP 90
+N C RK EG + +L ++ + P
Sbjct: 818 INHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVP 877
Query: 91 SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNAL---AYKVLVNTLWREGKTDEAVS 147
Y ++++ G+ L E +++ +A Y L+ +L K D+A
Sbjct: 878 IIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFE 937
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVAN 192
DM +RG + ++++ L + L + EEAL D IC++ +
Sbjct: 938 LYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSDCICQMVH 982
>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
Length = 888
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 117/254 (46%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P +R I AG +K D +D MR ++G P ++ YNA++
Sbjct: 531 PSNRTFRPIIEGFAVAGDMKRALDTLDLMR-------RSGCA--------PTVMTYNALI 575
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ +R+ Q E A VL ++ G P+ TY ++M A G +E+F K+++S +
Sbjct: 576 HGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLK 635
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ Y+ L+ + G+ A++ +M + I + +Y L G EA
Sbjct: 636 LDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADL 695
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
M ++ + P + ++T I AC +G++Q A + +M + PN+ T ++K + +
Sbjct: 696 MKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWAK 755
Query: 243 HGLFEEAMKLFQEM 256
L + A+K F+EM
Sbjct: 756 VSLPDRALKCFEEM 769
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 120/269 (44%), Gaps = 14/269 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD +YN ++ A + + A + +++K++ +PS T+ ++E G
Sbjct: 494 LQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRPIIEGFAVAGDMKRAL 553
Query: 113 EFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +++S P + Y L++ L R+ + + AVS ++ M GI + Y + R
Sbjct: 554 DTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGY 613
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NL 230
++G +A KI + K V Y L++AC SG +Q+A + +M P N
Sbjct: 614 AASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNT 673
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
NI++ + G EA L ++M ED + P+I+TF + ++AC
Sbjct: 674 FIYNILIDGWARRGDVWEAADLMKQMKEDG------------IPPNIHTFTSYINACCKA 721
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
E V + M GL N K +I
Sbjct: 722 GDMQRAENVIQEMADVGLKPNVKTFTTLI 750
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 119/277 (42%), Gaps = 27/277 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++ I VY+++++ + + V ++LK+ G +PS +YG ++ + + GK
Sbjct: 389 IDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLINLYVKIGKVPKAL 448
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++++ I N Y +L+N A S EDM + G+ A+Y L
Sbjct: 449 AVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAF 508
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C G + A+ +++ K +P ++ +I+ +G+++ A + M ++ C+P +
Sbjct: 509 CKMGNMDRAIRIFERMKKERMQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTV 568
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMA------------------EDSNHINREYD---- 268
+T N ++ + E A+ + +M+ S I + ++
Sbjct: 569 MTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTK 628
Query: 269 --KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
+ GL + D+Y + T+L AC R V + M
Sbjct: 629 IKESGLKL-DVYIYETLLRACCKSGRMQSALAVTREM 664
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 47/236 (19%), Positives = 97/236 (41%), Gaps = 27/236 (11%)
Query: 108 YNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ V F ++ K P+ + ++V + G A + E+M RGI +A ++ L
Sbjct: 238 WQAVVSAFERIPK---PSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSL 294
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FC 226
A AL ++++ + VV+Y+ LI + + ++A +F + K
Sbjct: 295 VHAYAVARDMRGALSCVEEMKSEGLEMTVVTYSILIAGYGKTNDAESADKLFKEAKTKLD 354
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS-------------NHINREYDKKGLV 273
+ N + + ++ A+ + G + A +L +EM ED + + +KK L+
Sbjct: 355 NLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLI 414
Query: 274 I----------PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
+ P I ++ +++ + V K M HG+ N K + +I
Sbjct: 415 VFERLKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLI 470
>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
Length = 924
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 119/264 (45%), Gaps = 14/264 (5%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D ++PD V YN +++ + + + A V QQ+ +G KP TY ++++ + +
Sbjct: 323 DRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVD 382
Query: 110 LVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
F++ + K PN Y L++ G+ +E V +++M + Y L
Sbjct: 383 RAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLL 442
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
LC GKC EA D + + KP V Y ++ G + + N M N S
Sbjct: 443 DYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGIS 502
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
PN N ++ AY + + +E M +F +M + +GL P++ T+ T++DA
Sbjct: 503 PNHRIFNTVICAYAKRAMIDEVMHIFIKMKQ-----------QGLS-PNVVTYGTLIDAL 550
Query: 288 AAEKRWDDLELVYKRMLHHGLHFN 311
R DD L + +M++ G+ N
Sbjct: 551 CKLGRVDDAVLQFNQMINEGVTPN 574
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 78/364 (21%), Positives = 141/364 (38%), Gaps = 75/364 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y + G+ G + E+ D+++ M + + P+ ++N V+
Sbjct: 468 PSVTIYGIMLHGYGKKGALSEMHDLLNLMVA---------------NGISPNHRIFNTVI 512
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN-LVYEFFRKVQKSYI 123
A +R + + ++KQQG P+ TYG +++ + G+ + V +F + + +
Sbjct: 513 CAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVT 572
Query: 124 PNALAYKVLV-------------------------------NT----LWREGKTDEAVSA 148
PN + + LV NT L +EG+ EA
Sbjct: 573 PNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRL 632
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
++ M G+ Y L C A + +EA+ +D + KP +VSY L+
Sbjct: 633 IDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCK 692
Query: 209 SGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE--------- 258
+G I NA +F +M + +P + T N ++ G F EA +L+ M +
Sbjct: 693 AGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICT 752
Query: 259 -----DSNHINREYDKKGLVIP---------DIYTFNTMLDACAAEKRWDDLELVYKRML 304
D N +D+ + DI TFN M+D R +D ++ +
Sbjct: 753 YSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIP 812
Query: 305 HHGL 308
+GL
Sbjct: 813 ANGL 816
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/333 (20%), Positives = 131/333 (39%), Gaps = 52/333 (15%)
Query: 13 IAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQ 72
+ LG + L + D R+ ++ ++ D PD+V YN V+N Q
Sbjct: 149 VGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQ 208
Query: 73 WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKV 131
+ A+ + ++ G P TY +++ + + + + F++ V+K PN + Y
Sbjct: 209 VDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNT 265
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA---GKCEEALMQM---- 184
+++ L + + D A + M +G+ S Y + LC A + E QM
Sbjct: 266 IIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRG 325
Query: 185 ------------DKICKV----------------ANKPLVVSYTGLIQACLDSGNIQNAA 216
D +CK KP ++YT +I + ++ A
Sbjct: 326 VKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAE 385
Query: 217 YIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
+F QM PN T N ++ YL G +EE ++ +EM+ + P
Sbjct: 386 GVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHD------------LEP 433
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
D++T+ +LD + ++ ++ M+ G+
Sbjct: 434 DVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGI 466
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 111/262 (42%), Gaps = 17/262 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + ++ L + G + E +IDSM + L+PD++ YN ++
Sbjct: 608 PDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMG---------------LKPDVISYNTLI 652
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + A +L + G KP+ +Y ++ G+ + Y FR+ ++K
Sbjct: 653 DGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVT 712
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P Y ++N L+R G+ EA +M + + S Y + C +EA
Sbjct: 713 PGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKI 772
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+C + + ++++ +I G ++A +F + N P++VT ++ + +E
Sbjct: 773 FQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIE 832
Query: 243 HGLFEEAMKLFQEMAEDSNHIN 264
G EE LF M + N
Sbjct: 833 EGSLEELDCLFSVMEKSGTAPN 854
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 70/324 (21%), Positives = 124/324 (38%), Gaps = 84/324 (25%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME------------ 100
LEPD+ Y +L+ + + A + + ++G KPS T YG+++
Sbjct: 431 LEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMH 490
Query: 101 --------------------VMLACGKYNLVYE----FFRKVQKSYIPNALAYKVLVNTL 136
V+ A K ++ E F + Q+ PN + Y L++ L
Sbjct: 491 DLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDAL 550
Query: 137 WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG---KCEEALMQM--------- 184
+ G+ D+AV M G+ + ++ L LC+ K EE ++M
Sbjct: 551 CKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDI 610
Query: 185 -----------------------DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
D + + KP V+SY LI + + A + +
Sbjct: 611 VFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDG 670
Query: 222 MKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
M + PN+V+ N ++ Y + G + A LF+EM +KG V P + T+
Sbjct: 671 MVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREML-----------RKG-VTPGVETY 718
Query: 281 NTMLDACAAEKRWDDLELVYKRML 304
NT+L+ R+ + +Y M+
Sbjct: 719 NTILNGLFRSGRFSEARELYVNMI 742
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 111/251 (44%), Gaps = 25/251 (9%)
Query: 103 LACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
LA ++N R P+ Y +++ R G+ + +A + + G
Sbjct: 64 LAVSRFN---RMLRDCSNKVAPDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDI 120
Query: 163 LYYDLARCLCSAGKCEEAL-MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
+ L + LC + EA+ + + ++ +V + VVSY L++ D + A + +
Sbjct: 121 VVNQLLKGLCDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHM 180
Query: 222 M----KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI 277
M + CSP++V+ NI++ + G ++A LF EM V PD+
Sbjct: 181 MVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEMG---------------VSPDV 225
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEH 337
T+NT++D + D E V+++M+ G+ N + +I +A +V++ E ++
Sbjct: 226 VTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQK 285
Query: 338 LARADRITPPA 348
+ D+ P+
Sbjct: 286 M--VDKGVKPS 294
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 1/132 (0%)
Query: 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR 116
I Y+ +L+ + ++ AF + Q L + T+ ++++ + G+ + F
Sbjct: 750 ICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFA 809
Query: 117 KV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
+ +P+ + Y+++ L EG +E ME+ G ++ + L R L G
Sbjct: 810 AIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRG 869
Query: 176 KCEEALMQMDKI 187
+ A + K+
Sbjct: 870 EIPRAGAYLSKL 881
>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
Length = 481
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 142/326 (43%), Gaps = 49/326 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR---SLPKKKFKTGTL--------------E 47
P+ V Y ++ G ++ +V+ MR + K+ TL +
Sbjct: 145 PNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAAK 204
Query: 48 RWDPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
+D L P V+YNA++ R + + A + + Q+G + TY L++ +
Sbjct: 205 VFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHAL 264
Query: 103 LACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
G+ + Y ++Q++ + P+ Y +L+N +EG +A+ E+M R+G+ +A
Sbjct: 265 FMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRATA 324
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANK----PLVVSYTGLIQACLDSGNIQNAAY 217
Y L G+ +E D++ KVA K P VV Y LI + G+++ A
Sbjct: 325 VTYTSLIYAFSRKGQVQET----DRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFE 380
Query: 218 IFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM----------------AEDS 260
I +M K P+ VT N +++ + G +EA L EM +D+
Sbjct: 381 IMAEMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTKRGIQPDLGLCKNGQGDDA 440
Query: 261 NHINREYDKKGLVIPDIYTFNTMLDA 286
++ +E KG + PD T+ ++++
Sbjct: 441 ENLMKEMVGKG-ITPDDSTYISLIEG 465
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 117/251 (46%), Gaps = 34/251 (13%)
Query: 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK--SYIPNALAYKVLVNTLWRE 139
+L +Q +P+A TY V+ A G+ E R++++ P+ Y L++ +
Sbjct: 137 ELLRQMPRPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKI 196
Query: 140 GKTDEAVSAVEDMERRGIVG-SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
G+ ++A ++M +G V SA +Y L C GK + AL + + + V +
Sbjct: 197 GRMEDAAKVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVAT 256
Query: 199 YTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y L+ A G +A + +M +N SP++ T NI++ Y + G ++A+++F+EM+
Sbjct: 257 YNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMS 316
Query: 258 ------------------------EDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKR 292
++++ + + KKG + PD+ +N ++++ CA
Sbjct: 317 RKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKG-IRPDVVMYNALINSHCAG--- 372
Query: 293 WDDLELVYKRM 303
D+E ++ M
Sbjct: 373 -GDMERAFEIM 382
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 112/265 (42%), Gaps = 22/265 (8%)
Query: 93 TTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM 152
TT+ +++ + A GK E R++ + PNA+ Y ++ G+ A+ + +M
Sbjct: 117 TTFNIMLRHLCATGKPVRALELLRQMPR---PNAVTYNTVIAGFCARGRVQAALEVMREM 173
Query: 153 -ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVAN-KPLVVSYTGLIQACLDSG 210
ER GI Y L C G+ E+A D++ P V Y LI D G
Sbjct: 174 RERGGIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEVAPSAVMYNALIGGYCDRG 233
Query: 211 NIQNA-AYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
+ A Y + ++ + + T N++V A G +A + +EM +
Sbjct: 234 KLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEEM-----------QR 282
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
GL PD++T+N +++ E V++ M G+ A + +I SR G+V+
Sbjct: 283 NGLS-PDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQVQ 341
Query: 330 ----LLEITWEHLARADRITPPALI 350
L ++ + R D + ALI
Sbjct: 342 ETDRLFKVAVKKGIRPDVVMYNALI 366
>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 604
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 146/305 (47%), Gaps = 35/305 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKE---LFDVIDSMRSLP-------------KKKFKTGTLER 48
PDTV ++ LG+AG + + LF ++++R +P + K + +
Sbjct: 300 PDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPS 359
Query: 49 WDPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
W R++ P Y+ +++ + + E A +L+++ ++G P Y +++ +
Sbjct: 360 WFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALG 419
Query: 104 ACGKYNLVYEFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+Y+L E F++++++ +A Y V++ L + G+ D+A++ ++M + G
Sbjct: 420 KAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVY 479
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y L L G +EAL M ++ + P + SY ++ +G A + + M
Sbjct: 480 AYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNM 539
Query: 223 K-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
K + P++V+ N ++ A G+FEEA KL +EM N + EY D+ T++
Sbjct: 540 KQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEM----NTLGFEY--------DLITYS 587
Query: 282 TMLDA 286
++L+A
Sbjct: 588 SILEA 592
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/328 (21%), Positives = 147/328 (44%), Gaps = 29/328 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P AY S+ + L G +++ + + M + + PD V Y+A++
Sbjct: 159 PIAQAYNSMIIMLMHEGQYEKVHQLYNEMST--------------EGHCFPDTVTYSALI 204
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+A + + + A +L ++K+ G +P+ Y +++ + + F +++ Y
Sbjct: 205 SAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCR 264
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y L+ L + G+ DEA +M+R G ++ L AG+ ++A+
Sbjct: 265 PDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKL 324
Query: 184 MDKICKVANKPLVVSYTGLIQACLDS-GNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYL 241
++ + P VV+Y +I+A +S F +MK + SP+ T +I++ +
Sbjct: 325 FQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFC 384
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ E+AM L +EM D+KG P + +++DA KR+D +++
Sbjct: 385 KTNRMEKAMMLLEEM-----------DEKGFP-PCPAAYCSLIDALGKAKRYDLACELFQ 432
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + +A+ + MI +AG+++
Sbjct: 433 ELKENCGSSSARVYAVMIKHLGKAGRLD 460
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/327 (20%), Positives = 137/327 (41%), Gaps = 35/327 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSL---PKKKFKT-------------GTLE 47
+PDTV Y ++ + G +++ M+ + P K T G L
Sbjct: 194 FPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALS 253
Query: 48 RWDPR----LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
++ PD+ Y ++ + + + A+ +++++G +P ++ +
Sbjct: 254 LFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLG 313
Query: 104 ACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWR-EGKTDEAVSAVEDMERRGIVGSA 161
G+ + + F++++ IP+ + Y ++ L+ + + E S E M+ GI S+
Sbjct: 314 KAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSS 373
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L C + E+A+M ++++ + P +Y LI A + A +F +
Sbjct: 374 FTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQE 433
Query: 222 MKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
+K C S + +M+K + G ++A+ +F EM +K G PD+Y +
Sbjct: 434 LKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEM-----------NKLGCA-PDVYAY 481
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHG 307
N ++ A D+ +RM HG
Sbjct: 482 NALMSGLARTGMLDEALSTMRRMQEHG 508
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 119/262 (45%), Gaps = 20/262 (7%)
Query: 55 PDIVVYNAVLNACVRR----KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
P VV L+ VR K A + Q+K + +P A Y ++ +++ G+Y
Sbjct: 120 PICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEK 179
Query: 111 VYEFFRKV--QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
V++ + ++ + P+ + Y L++ + G+ D A+ + +M+ G+ + +Y L
Sbjct: 180 VHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLI 239
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
AL +++ +P V +YT LI+ +G I A + F +M + C
Sbjct: 240 ALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCR 299
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P+ V N M+ + G ++AMKLFQEM + IP + T+NT++ A
Sbjct: 300 PDTVFMNNMINFLGKAGRLDDAMKLFQEM------------ETLRCIPSVVTYNTIIKAL 347
Query: 288 AAEK-RWDDLELVYKRMLHHGL 308
K R ++ ++RM G+
Sbjct: 348 FESKSRASEVPSWFERMKESGI 369
>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 754
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 143/330 (43%), Gaps = 40/330 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTLERWDPRLEPDIVVYNA 62
P+ Y I LG+ G +++ ++ + M +P+ F Y A
Sbjct: 140 PNEHIYTIIISLLGREGLLEKSTEIFEEMPTHGVPRSVFS-----------------YTA 182
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE----FFRKV 118
++N+ R Q+E + +L+++K++ PS TY V+ +C + L +E F ++
Sbjct: 183 LINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVIN---SCARGGLNWEGLLSLFAEM 239
Query: 119 QKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+ I P+ + Y L+N G DEA M G+V Y +L K
Sbjct: 240 RHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETFGKLNKL 299
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIM 236
E+ + ++ N P + SY L++A G+I++A +F QM+ C PN VT +++
Sbjct: 300 EKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSML 359
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ Y HG +++ +LF EM + PD+ T+N +++ + ++
Sbjct: 360 LNLYGGHGRYDDVRELFLEMKVSNTE------------PDVGTYNVLIEVFGEGGYFKEV 407
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
++ M+ + N + +I + G
Sbjct: 408 VTLFHDMVEENVEPNMGTYEGLIYACGKGG 437
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 80/361 (22%), Positives = 143/361 (39%), Gaps = 77/361 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD YR++ T G+ ++++ +++ M S +G L PDI YN +L
Sbjct: 281 PDITTYRNLVETFGKLNKLEKVSELLKEMES-------SGNL--------PDISSYNVLL 325
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
A + A V +Q+++ P+A TY +++ + G+Y+ V E F +++ S
Sbjct: 326 EAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTE 385
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDM------------------------------- 152
P+ Y VL+ G E V+ DM
Sbjct: 386 PDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKI 445
Query: 153 ----ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+ +GIV S Y + A EEAL+ + + ++ +KP V +Y LI
Sbjct: 446 LLHMDEKGIVPSTKAYTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFAR 505
Query: 209 SGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE------------ 255
G + + I +M ++ + + + N +++ Y + G FEEA+K + E
Sbjct: 506 GGLYKESEAIMWKMGESGVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERT 565
Query: 256 ------------MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
+ ++S RE G ++P + + M+ A RWDD V M
Sbjct: 566 FEAVLSVYCTAGLVDESEEQFREIRASG-ILPSVMCYCMMIAVYARSNRWDDAYEVLDEM 624
Query: 304 L 304
+
Sbjct: 625 V 625
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 91/225 (40%), Gaps = 51/225 (22%)
Query: 88 QKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI--PNALAYKVLVNTLWREGKTDEA 145
K S + LV + G + F+ +Q+ PN Y ++++ L REG +++
Sbjct: 102 NKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKS 161
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
E+M G+ S V SYT LI +
Sbjct: 162 TEIFEEMPTHGVPRS-----------------------------------VFSYTALINS 186
Query: 206 CLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGL-FEEAMKLFQEMAEDSNHI 263
G + + + +MK +P+++T N ++ + GL +E + LF EM +
Sbjct: 187 YGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARGGLNWEGLLSLFAEMRHEG--- 243
Query: 264 NREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+ PDI T+NT+L+ACA D+ E+V++ M G+
Sbjct: 244 ---------IQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGM 279
>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
Length = 683
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 130/296 (43%), Gaps = 25/296 (8%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + ++ P++V YNA++NA V+ ++ A + ++ +G P+ TY +++
Sbjct: 313 EMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQD 372
Query: 107 KYNLVYE-FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ + + F+ K P+ + L++ + D+ + + +M RRG+V + Y
Sbjct: 373 RLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYN 432
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-- 223
L C G AL ++ P +V+ L+ D+G +++A +F M+
Sbjct: 433 TLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKS 492
Query: 224 ----------NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV 273
N P+++T NI++ + G F EA +L++EM +
Sbjct: 493 KMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRG------------I 540
Query: 274 IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+PD T+++M+D + R D+ ++ M N +I +AG+V+
Sbjct: 541 VPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVD 596
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 128/269 (47%), Gaps = 17/269 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD++ + ++N R + A +L ++ + G +P TYG ++ M G
Sbjct: 180 PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNL 239
Query: 115 FRKVQK-SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
RK+++ S+I PN + Y +++ L ++G+ ++ + +M+ +GI + Y + C
Sbjct: 240 LRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFC 299
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
+G+ A + ++ + P VV+Y LI A + G AA ++++M PN +
Sbjct: 300 ISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTI 359
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N M+ + + + A +F MA KG PD++TF T++D K
Sbjct: 360 TYNSMIDGFCKQDRLDAAEDMFYLMA-----------TKGCS-PDVFTFTTLIDGYCGAK 407
Query: 292 RWDD-LELVYKRMLHHGLHFNAKRHLRMI 319
R DD +EL+++ M GL N + +I
Sbjct: 408 RIDDGMELLHE-MPRRGLVANTVTYNTLI 435
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 127/268 (47%), Gaps = 9/268 (3%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
+E D + P+IV YN ++ +W A +LQ++ ++ P+ TY ++ +
Sbjct: 277 IEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKE 336
Query: 106 GKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
GK+ E + + + + IPN + Y +++ ++ + D A M +G +
Sbjct: 337 GKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTF 396
Query: 165 YDLARCLCSAGKCE---EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
L C A + + E L +M + VAN V+Y LI G++ A + Q
Sbjct: 397 TTLIDGYCGAKRIDDGMELLHEMPRRGLVAN---TVTYNTLIHGFCLVGDLNAALDLSQQ 453
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
M + P++VTCN ++ ++G ++A+++F+ M + ++ + G V PD+ T+
Sbjct: 454 MISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNG-VEPDVLTY 512
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGL 308
N ++ E ++ + E +Y+ M H G+
Sbjct: 513 NILICGLINEGKFLEAEELYEEMPHRGI 540
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 98/249 (39%), Gaps = 27/249 (10%)
Query: 51 PR--LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY 108
PR L + V YN +++ A + QQ+ G P T +++ + GK
Sbjct: 420 PRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKL 479
Query: 109 NLVYEFFRKVQKSYI------------PNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
E F+ +QKS + P+ L Y +L+ L EGK EA E+M RG
Sbjct: 480 KDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRG 539
Query: 157 IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
IV Y + LC + +EA + + P VV++ LI +G + +
Sbjct: 540 IVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGL 599
Query: 217 YIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
+F +M + + + ++ + + G A+ +FQEM V P
Sbjct: 600 ELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSG------------VYP 647
Query: 276 DIYTFNTML 284
D T ML
Sbjct: 648 DTITIRNML 656
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/310 (20%), Positives = 138/310 (44%), Gaps = 24/310 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P ++ +N ++ A VR ++ + + Q+++++ + ++ ++++ +C K
Sbjct: 79 PSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALST 138
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F K+ K + P+ + + L++ L + + EA+ + R ++ + L LC
Sbjct: 139 FGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPDVL----TFTTLMNGLCR 194
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF--CSPNLV 231
G+ EA+ +D++ + +P ++Y + G+ +A + +M+ PN+V
Sbjct: 195 EGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVV 254
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
+ ++ + G ++ LF EM + KG + P+I T+N M+
Sbjct: 255 IYSAIIDGLCKDGRHSDSHNLFIEMQD-----------KG-IFPNIVTYNCMIGGFCISG 302
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLARA---DRITPP 347
RW + + + ML + N + +I + GK E E+ E L R + IT
Sbjct: 303 RWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYN 362
Query: 348 ALIKERFCNR 357
++I + FC +
Sbjct: 363 SMI-DGFCKQ 371
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 81/178 (45%), Gaps = 5/178 (2%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V ++ L G +K D ++ +++ K K ++ +EPD++ YN ++
Sbjct: 461 PDIVTCNTLLDGLCDNGKLK---DALEMFKAMQKSKMDLDASHPFNG-VEPDVLTYNILI 516
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ ++ A + +++ +G P TY +++ + + + + F + KS+
Sbjct: 517 CGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFS 576
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
PN + + L+N + G+ D+ + +M RRGIV A +Y L G AL
Sbjct: 577 PNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGAL 634
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 17/165 (10%)
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P+ + + L+ + R + D +S + MER+ I + L +C CS K AL
Sbjct: 78 LPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALS 137
Query: 183 QMDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241
K+ K+ P VV++T L+ CLD + A +F+Q+ C P+++T ++
Sbjct: 138 TFGKLTKLGLHPDVVTFTTLLHGLCLDH-RVSEALDLFHQI---CRPDVLTFTTLMNGLC 193
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
G EA+ L M E+ + PD T+ T +D
Sbjct: 194 REGRVVEAVALLDRMVENG------------LQPDQITYGTFVDG 226
>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
Group]
gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
Group]
Length = 506
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 119/269 (44%), Gaps = 16/269 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK--PSATTYGLVMEVMLACGKYNLVY 112
P++ + +L + + A +L + G P+ +Y V++ +L G + Y
Sbjct: 159 PNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAY 218
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+R+ + + +PN + Y ++ L + D+A+ + M + G+ + Y L
Sbjct: 219 ATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGF 278
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
CS+G+ EA+ ++K+C +P VV+Y+ + +G A IF+ M K P++
Sbjct: 279 CSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDI 338
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T + ++ Y G E LF M + PD Y FNT++ A A +
Sbjct: 339 TTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQ------------PDHYVFNTLIYASAKQ 386
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
+ D+ LV+ +M GL N + +I
Sbjct: 387 GKVDEAMLVFSKMRQQGLKPNCVTYSTLI 415
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 126/305 (41%), Gaps = 29/305 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V+Y ++ L + G P K + T E D R+ P++V+Y++++
Sbjct: 196 PNVVSYSTVIDGLLKGGD--------------PDKAYAT-YREMLDRRILPNVVIYSSII 240
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
A + + + A V ++ + G P+ TY ++ + G+ +F K+ + +
Sbjct: 241 AALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVE 300
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y ++ L + G+ EA + M +RG+ Y L G E
Sbjct: 301 PNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGL 360
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
D + + +P + LI A G + A +F++M+ PN VT + ++ Y +
Sbjct: 361 FDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCK 420
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
E A+ LFQEM + V P+ T+N ML R + Y +
Sbjct: 421 ITRMENALALFQEMVSNG------------VSPNFITYNIMLQGLFRTGRTATAKEFYVQ 468
Query: 303 MLHHG 307
++ G
Sbjct: 469 IIKSG 473
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/209 (17%), Positives = 98/209 (46%), Gaps = 16/209 (7%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL-M 182
P Y +L+ G+ D +A+ + ++G ++ L + LC+ + ++A+ +
Sbjct: 88 PTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDI 147
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN---FCSPNLVTCNIMVKA 239
+ + +++ P V S+T +++ Q A + + M + C PN+V+ + ++
Sbjct: 148 VLRGMTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDG 207
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
L+ G ++A ++EM D++ ++P++ +++++ A + D V
Sbjct: 208 LLKGGDPDKAYATYREM----------LDRR--ILPNVVIYSSIIAALCKGQAMDKAMEV 255
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+ RM+ +G+ N + ++ +G++
Sbjct: 256 HDRMVKNGVTPNCFTYTSLVHGFCSSGQL 284
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 15/165 (9%)
Query: 145 AVSAVEDMERRG---IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
AVS M R G + + Y L C CSAG+ + + + K + + +
Sbjct: 71 AVSRFNRMARAGASMVTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNP 130
Query: 202 LIQA-CLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
L++ C D + M C PN+ + I++K +EA++L MA+D
Sbjct: 131 LLKGLCADKRTDDAMDIVLRGMTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMADD 190
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
G +P++ +++T++D D Y+ ML
Sbjct: 191 G----------GGCLPNVVSYSTVIDGLLKGGDPDKAYATYREML 225
>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 686
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 130/296 (43%), Gaps = 25/296 (8%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + ++ P++V YNA++NA V+ ++ A + ++ +G P+ TY +++
Sbjct: 313 EMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQD 372
Query: 107 KYNLVYE-FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ + + F+ K P+ + L++ + D+ + + +M RRG+V + Y
Sbjct: 373 RLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYN 432
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-- 223
L C G AL ++ P +V+ L+ D+G +++A +F M+
Sbjct: 433 TLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKS 492
Query: 224 ----------NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV 273
N P+++T NI++ + G F EA +L++EM +
Sbjct: 493 KMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRG------------I 540
Query: 274 IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+PD T+++M+D + R D+ ++ M N +I +AG+V+
Sbjct: 541 VPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVD 596
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 128/269 (47%), Gaps = 17/269 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD++ + ++N R + A +L ++ + G +P TYG ++ M G
Sbjct: 180 PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNL 239
Query: 115 FRKVQK-SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
RK+++ S+I PN + Y +++ L ++G+ ++ + +M+ +GI + Y + C
Sbjct: 240 LRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFC 299
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
+G+ A + ++ + P VV+Y LI A + G AA ++++M PN +
Sbjct: 300 ISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTI 359
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N M+ + + + A +F MA KG PD++TF T++D K
Sbjct: 360 TYNSMIDGFCKQDRLDAAEDMFYLMA-----------TKGCS-PDVFTFTTLIDGYCGAK 407
Query: 292 RWDD-LELVYKRMLHHGLHFNAKRHLRMI 319
R DD +EL+++ M GL N + +I
Sbjct: 408 RIDDGMELLHE-MPRRGLVANTVTYNTLI 435
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 127/268 (47%), Gaps = 9/268 (3%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
+E D + P+IV YN ++ +W A +LQ++ ++ P+ TY ++ +
Sbjct: 277 IEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKE 336
Query: 106 GKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
GK+ E + + + + IPN + Y +++ ++ + D A M +G +
Sbjct: 337 GKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTF 396
Query: 165 YDLARCLCSAGKCE---EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
L C A + + E L +M + VAN V+Y LI G++ A + Q
Sbjct: 397 TTLIDGYCGAKRIDDGMELLHEMPRRGLVAN---TVTYNTLIHGFCLVGDLNAALDLSQQ 453
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
M + P++VTCN ++ ++G ++A+++F+ M + ++ + G V PD+ T+
Sbjct: 454 MISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNG-VEPDVLTY 512
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGL 308
N ++ E ++ + E +Y+ M H G+
Sbjct: 513 NILICGLINEGKFLEAEELYEEMPHRGI 540
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 98/249 (39%), Gaps = 27/249 (10%)
Query: 51 PR--LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY 108
PR L + V YN +++ A + QQ+ G P T +++ + GK
Sbjct: 420 PRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKL 479
Query: 109 NLVYEFFRKVQKSYI------------PNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
E F+ +QKS + P+ L Y +L+ L EGK EA E+M RG
Sbjct: 480 KDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRG 539
Query: 157 IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
IV Y + LC + +EA + + P VV++ LI +G + +
Sbjct: 540 IVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGL 599
Query: 217 YIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
+F +M + + + ++ + + G A+ +FQEM V P
Sbjct: 600 ELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSG------------VYP 647
Query: 276 DIYTFNTML 284
D T ML
Sbjct: 648 DTITIRNML 656
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/310 (20%), Positives = 138/310 (44%), Gaps = 24/310 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P ++ +N ++ A VR ++ + + Q+++++ + ++ ++++ +C K
Sbjct: 79 PSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALST 138
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F K+ K + P+ + + L++ L + + EA+ + R ++ + L LC
Sbjct: 139 FGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPDVL----TFTTLMNGLCR 194
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF--CSPNLV 231
G+ EA+ +D++ + +P ++Y + G+ +A + +M+ PN+V
Sbjct: 195 EGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVV 254
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
+ ++ + G ++ LF EM + KG + P+I T+N M+
Sbjct: 255 IYSAIIDGLCKDGRHSDSHNLFIEMQD-----------KG-IFPNIVTYNCMIGGFCISG 302
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLARA---DRITPP 347
RW + + + ML + N + +I + GK E E+ E L R + IT
Sbjct: 303 RWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYN 362
Query: 348 ALIKERFCNR 357
++I + FC +
Sbjct: 363 SMI-DGFCKQ 371
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 17/165 (10%)
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P+ + + L+ + R + D +S + MER+ I + L +C CS K AL
Sbjct: 78 LPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALS 137
Query: 183 QMDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241
K+ K+ P VV++T L+ CLD + A +F+Q+ C P+++T ++
Sbjct: 138 TFGKLTKLGLHPDVVTFTTLLHGLCLDH-RVSEALDLFHQI---CRPDVLTFTTLMNGLC 193
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
G EA+ L M E+ + PD T+ T +D
Sbjct: 194 REGRVVEAVALLDRMVENG------------LQPDQITYGTFVDG 226
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/150 (19%), Positives = 66/150 (44%), Gaps = 16/150 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT+ Y S+ L + + E + SM S K F P++V +N ++
Sbjct: 542 PDTITYSSMIDGLCKQSRLDEATQMFVSMGS---KSFS------------PNVVTFNTLI 586
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + + + + ++ ++G A Y ++ G N + F+++ S +
Sbjct: 587 NGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVY 646
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDME 153
P+ + + ++ W + + + AV+ +ED++
Sbjct: 647 PDTITIRNMLTGFWSKEELERAVAMLEDLQ 676
>gi|384249299|gb|EIE22781.1| hypothetical protein COCSUDRAFT_47692 [Coccomyxa subellipsoidea
C-169]
Length = 1226
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 132/277 (47%), Gaps = 14/277 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D+ Y A ++ CV +Q E A + ++++G + + T+ +M V + CG+ L + +
Sbjct: 135 DVYTYTAAISICVSAQQLERALELSADMQRRGVQRNVHTHSALMNVCIKCGQLKLALDVW 194
Query: 116 RKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+Q+ +PN + Y L++ + G+ ++A+ + M+ +GI Y L ++
Sbjct: 195 EDMQRDGIVPNVVTYNTLIDVYGKLGQWEQALQVLRRMKFQGIEPVTRTYNTLMIACNTS 254
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTC 233
G+ + AL +++ + SY LI A +G++ + QM + C +++T
Sbjct: 255 GQWQTALQLYEEMRAAGHALNTTSYNALISAHSKAGDLPQVLDTYRQMVQQGCERSVITY 314
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
+ ++ A + G ++ A++ F E +D+ P++ TFN+++ ACA +W
Sbjct: 315 SSLISACEKSGEWQLALRFFDECLKDN------------CRPNVITFNSLITACAQGAQW 362
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ +++ M G + + +I R GK +L
Sbjct: 363 EKARELFELMQQQGCTPDVVTYTALISAYERGGKWQL 399
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 130/292 (44%), Gaps = 25/292 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V YN +++ + QWE A VL+++K QG +P TY +M G++ +
Sbjct: 204 PNVVTYNTLIDVYGKLGQWEQALQVLRRMKFQGIEPVTRTYNTLMIACNTSGQWQTALQL 263
Query: 115 FRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ +++ + + N +Y L++ + G + + M ++G S Y L
Sbjct: 264 YEEMRAAGHALNTTSYNALISAHSKAGDLPQVLDTYRQMVQQGCERSVITYSSLISACEK 323
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+G+ + AL D+ K +P V+++ LI AC + A +F M + C+P++VT
Sbjct: 324 SGEWQLALRFFDECLKDNCRPNVITFNSLITACAQGAQWEKARELFELMQQQGCTPDVVT 383
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD-----AC 287
++ AY G ++ A++ FQ M KG PD +N ++D C
Sbjct: 384 YTALISAYERGGKWQLALQAFQAM-----------QAKG-CKPDSIVYNAIIDTLWDTGC 431
Query: 288 AAEKRWDDLELVYKRMLHHGL----HFNAKRHLRMILDASRAGKVELLEITW 335
A +R ++++R GL A +L + L AG L TW
Sbjct: 432 AWPQR--QAAVLHRRASAGGLLRRAAHAAPGYLELCLHTLTAGVAALSLYTW 481
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 112/243 (46%), Gaps = 14/243 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++ ++ ++A++N C++ Q + A V + +++ G P+ TY +++V G++
Sbjct: 167 VQRNVHTHSALMNVCIKCGQLKLALDVWEDMQRDGIVPNVVTYNTLIDVYGKLGQWEQAL 226
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ R+++ I P Y L+ G+ A+ E+M G + Y L
Sbjct: 227 QVLRRMKFQGIEPVTRTYNTLMIACNTSGQWQTALQLYEEMRAAGHALNTTSYNALISAH 286
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNL 230
AG + L ++ + + V++Y+ LI AC SG Q A F++ +K+ C PN+
Sbjct: 287 SKAGDLPQVLDTYRQMVQQGCERSVITYSSLISACEKSGEWQLALRFFDECLKDNCRPNV 346
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T N ++ A + +E+A +LF+ M + PD+ T+ ++ A
Sbjct: 347 ITFNSLITACAQGAQWEKARELFELMQQQG------------CTPDVVTYTALISAYERG 394
Query: 291 KRW 293
+W
Sbjct: 395 GKW 397
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 81/176 (46%), Gaps = 14/176 (7%)
Query: 165 YDLARCLC-SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y A +C SA + E AL + + + V +++ L+ C+ G ++ A ++ M
Sbjct: 139 YTAAISICVSAQQLERALELSADMQRRGVQRNVHTHSALMNVCIKCGQLKLALDVWEDMQ 198
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
++ PN+VT N ++ Y + G +E+A+++ + M K + P T+NT
Sbjct: 199 RDGIVPNVVTYNTLIDVYGKLGQWEQALQVLRRM------------KFQGIEPVTRTYNT 246
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
++ AC +W +Y+ M G N + +I S+AG + + T+ +
Sbjct: 247 LMIACNTSGQWQTALQLYEEMRAAGHALNTTSYNALISAHSKAGDLPQVLDTYRQM 302
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/161 (19%), Positives = 69/161 (42%), Gaps = 26/161 (16%)
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
++++ R G+ A ++D L G EA D V +YT I C+
Sbjct: 102 LKELARTGLAHRAQEFFDHVLAL---GDSTEAARLAD----------VYTYTAAISICVS 148
Query: 209 SGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
+ ++ A + M + N+ T + ++ ++ G + A+ ++++M D
Sbjct: 149 AQQLERALELSADMQRRGVQRNVHTHSALMNVCIKCGQLKLALDVWEDMQRDG------- 201
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
++P++ T+NT++D +W+ V +RM G+
Sbjct: 202 -----IVPNVVTYNTLIDVYGKLGQWEQALQVLRRMKFQGI 237
>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 139/311 (44%), Gaps = 32/311 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V ++ G+AG +++ + D MRSL + P++V YN V+
Sbjct: 304 PDVVLINNLINIFGKAGRLEDALKLFDQMRSL---------------KCAPNVVTYNTVI 348
Query: 65 NACVRRKQ--WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKS 121
A K E A W +++K G PS+ TY ++++ + ++ +K
Sbjct: 349 KALFESKAPASEAASW-FEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKG 407
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+ P AY L+N L + + + A +++ SA +Y + + L G+ EA+
Sbjct: 408 FPPCPAAYCSLINALGKAKRYEAANELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAV 467
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAY 240
+++ K+ P V +Y L+ + +G I+ A M+ N C+P+L + NI++
Sbjct: 468 DLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGL 527
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
G E+A ++F +M K L+ PD ++NT+L + + +++ +
Sbjct: 528 ARTGRPEQATEMFMKM------------KDSLIKPDAVSYNTILGSLSRSGMFEEAAKLM 575
Query: 301 KRMLHHGLHFN 311
+ M G ++
Sbjct: 576 REMGSRGFEYD 586
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 121/239 (50%), Gaps = 20/239 (8%)
Query: 55 PDIVVYNAVLNACVR----RKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
P V+ A L+ V+ K A V Q+K + KP+A+TY ++ +++ G +
Sbjct: 125 PTCVIGPADLSEVVKILGKAKMVNKALSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEK 184
Query: 111 VYEFFRKV--QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
++E + ++ + P+ + Y VLV+ + G+ D A+ ++M+ G+ +A +Y L
Sbjct: 185 IHELYHEMCNEGDCFPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLL 244
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQMKNFCS 227
+G E+AL + ++ P V +YT LI+ SG +++A +F N +K+ C
Sbjct: 245 AIYFKSGD-EKALGLVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCK 303
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
P++V N ++ + + G E+A+KLF +M + P++ T+NT++ A
Sbjct: 304 PDVVLINNLINIFGKAGRLEDALKLFDQM------------RSLKCAPNVVTYNTVIKA 350
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/325 (21%), Positives = 141/325 (43%), Gaps = 28/325 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y S+ + L Q GH +++ ++ M + + PD + Y+ ++
Sbjct: 164 PTASTYNSMILMLMQEGHHEKIHELYHEMCN--------------EGDCFPDTMTYSVLV 209
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+A V+ + + A + ++K G P+A Y ++ + G + K P
Sbjct: 210 SAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGDEKALGLVQEMKDKGCAP 269
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
Y L+ L + G+ ++A S +M + G L +L AG+ E+AL
Sbjct: 270 TVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLF 329
Query: 185 DKICKVANKPLVVSYTGLIQACLDS-GNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
D++ + P VV+Y +I+A +S AA F +MK N +P+ T +I++ + +
Sbjct: 330 DQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDGFCK 389
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
E+A+ L +EM D+KG P + ++++A KR++ ++
Sbjct: 390 TNRVEKALLLLEEM-----------DEKGFP-PCPAAYCSLINALGKAKRYEAANELFLE 437
Query: 303 MLHHGLHFNAKRHLRMILDASRAGK 327
+ + +A+ + MI + + G+
Sbjct: 438 LKENCGRSSARIYAVMIKNLGKCGR 462
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 19/171 (11%)
Query: 10 YRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVR 69
Y + LG+ G E D+ + M+ K G PD+ YNA+++ VR
Sbjct: 450 YAVMIKNLGKCGRPSEAVDLFNEMK-------KIGC--------NPDVYAYNALMSGLVR 494
Query: 70 RKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALA 128
E AF L+ +++ G P ++ +++ + G+ E F K++ S I P+A++
Sbjct: 495 AGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVS 554
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
Y ++ +L R G +EA + +M RG Y + L + GK +E
Sbjct: 555 YNTILGSLSRSGMFEEAAKLMREMGSRGFEYDHITYSSI---LEAVGKVDE 602
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 74/186 (39%), Gaps = 13/186 (6%)
Query: 153 ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI 212
+RR Y L RCL G E + ++ + + + + L +
Sbjct: 87 KRRNFEHDLTTYMPLIRCLDDCGLFGEMWKMIQEMVRSPTCVIGPADLSEVVKILGKAKM 146
Query: 213 QNAAY-IFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270
N A +F Q+K+ C P T N M+ ++ G E+ +L+ EM +
Sbjct: 147 VNKALSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHEMCNE----------- 195
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
G PD T++ ++ A R D ++ M +GLH AK + ++ ++G +
Sbjct: 196 GDCFPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGDEKA 255
Query: 331 LEITWE 336
L + E
Sbjct: 256 LGLVQE 261
>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
Length = 991
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 124/300 (41%), Gaps = 28/300 (9%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+++ Y +L ++ AF + + ++Q G KP Y ++ + + G+ Y F
Sbjct: 530 PNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSF 589
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
V+K + Y L++ + G TD A + +E M G + Y L LC
Sbjct: 590 I--VRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQ 647
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTC 233
+ EAL +D++ K + +YT LI L G +A ++N+M + P+ T
Sbjct: 648 KRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTY 707
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
+ + +Y + G E+A L +M + V PD+ T+N ++D C
Sbjct: 708 TVFINSYCKEGRLEDAEDLILKMEREG------------VAPDVVTYNILIDGCGHMGYI 755
Query: 294 DDLELVYKRMLHHGLHFN-----------AKRHLRMILDASRAGKVELLE--ITWEHLAR 340
D KRM+ N K +L + +G L+E ITW+ L R
Sbjct: 756 DRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLER 815
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 123/279 (44%), Gaps = 17/279 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P+++ Y ++++ + + + A VL+ +++ G +P+A TY +M ++ K +
Sbjct: 458 LVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAM 517
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
K+QK IPN + Y L+ E D A E ME+ G+ Y L L
Sbjct: 518 ALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDAL 577
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C AG+ EEA + + K V YT LI +GN AA + +M C+P+
Sbjct: 578 CKAGRAEEAYSFIVRKGVALTK---VYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDS 634
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T ++++ A + EA+ + +M+ +G+ I+ + ++D E
Sbjct: 635 YTYSVLLHALCKQKRLNEALPILDQMS-----------LRGIKCT-IFAYTILIDEMLRE 682
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ D + +Y M G +A + I + G++E
Sbjct: 683 GKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLE 721
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 21/206 (10%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V YN +++ C + AF L+++ +P+ TY L+++ +L K NL Y
Sbjct: 737 PDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLL---KGNLAY-- 791
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
R V S +W + D +E M + G+ + Y L C A
Sbjct: 792 VRSVDTS-------------GMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKA 838
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--PNLVT 232
G+ EEA + +D +C P YT LI+ C D+ + A + M C P L +
Sbjct: 839 GRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSE-CGFQPQLES 897
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAE 258
++V G FE+ LF ++ E
Sbjct: 898 YRLLVVGLCNEGDFEKVKSLFCDLLE 923
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 121/297 (40%), Gaps = 26/297 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P +V + ++N ++++ A + ++ K +G ++ ++ + E
Sbjct: 390 PTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKEL 449
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ +PN + Y +++ + GK D A+ ++ MER G +A Y L L
Sbjct: 450 LNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVK 509
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
K +A+ + K+ K P V++YT L+Q D + NA +F M +N P+
Sbjct: 510 DKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHA 569
Query: 233 CNIMVKAYLEHGLFEEA----------------MKLFQEMAEDSNH------INREYDKK 270
++ A + G EEA L ++ N I R D+
Sbjct: 570 YAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEG 629
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
PD YT++ +L A +KR ++ + +M G+ + +I + R GK
Sbjct: 630 --CTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGK 684
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 102/242 (42%), Gaps = 14/242 (5%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
YN L + R E V QL Q G P TY +++ G + +FR +
Sbjct: 151 YNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLL 210
Query: 120 KSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ + P LV R G+ +A M G + Y L + LC A
Sbjct: 211 EGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVR 270
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMV 237
+AL+ + + P V ++T LI SG + +A +F+ M +N P+++T N M+
Sbjct: 271 KALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMI 330
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
Y + G +A+K+ + M ++ H PD +T+NT++ +K + E
Sbjct: 331 VGYSKLGRMNDALKIKELMEKNGCH------------PDDWTYNTLIYGLCDQKTEEAEE 378
Query: 298 LV 299
L+
Sbjct: 379 LL 380
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 115/277 (41%), Gaps = 15/277 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P ++ YNA++ + + A + + +++ G P TY ++ L K E
Sbjct: 321 PSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLI-YGLCDQKTEEAEEL 379
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
V++ + P + + L+N K D+A+ M ++ L L
Sbjct: 380 LNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIK 439
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+ +EA +++I P V++YT +I SG + A + M ++ C PN T
Sbjct: 440 KDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWT 499
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ ++ +AM L +M +D +IP++ T+ T+L E
Sbjct: 500 YNSLMYGLVKDKKLHKAMALLTKMQKDG------------IIPNVITYTTLLQGQCDEHD 547
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+D+ +++ M +GL + + + +AG+ E
Sbjct: 548 FDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAE 584
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/280 (19%), Positives = 116/280 (41%), Gaps = 15/280 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML--ACGKYNL 110
LEP+ NA++ R + A W+ + G + + +Y ++++ + C + L
Sbjct: 214 LEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKAL 273
Query: 111 VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
V F + PN A+ L++ L + G+ +A + M + G+V S Y +
Sbjct: 274 VL-FLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVG 332
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNL 230
G+ +AL + + K P +Y LI D + + N +K +P +
Sbjct: 333 YSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTV 392
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT ++ Y F++A+++ +M + D+ F ++++ +
Sbjct: 393 VTFTNLINGYCMAEKFDDALRMKNKMMSSKCKL------------DLQVFGKLINSLIKK 440
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
R + + + + +GL N + +I ++GKV++
Sbjct: 441 DRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDI 480
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 114/286 (39%), Gaps = 36/286 (12%)
Query: 27 FDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ 86
FD+ + M + + + G L PD V YN ++ + + A + L +
Sbjct: 161 FDMTEYMGRVYSQLVQDGLL--------PDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEG 212
Query: 87 GQKPSATT-------YGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWRE 139
G +P T Y E+ AC + F N +Y +L+ L
Sbjct: 213 GLEPETFTCNALVLGYCRTGELRKAC------WLFLMMPLMGCQRNEYSYTILIQGLCDA 266
Query: 140 GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSY 199
+A+ M+R G + + L LC +G+ +A + D + + P V++Y
Sbjct: 267 KCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTY 326
Query: 200 TGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
+I G + +A I M KN C P+ T N ++ +GL ++ + +E+
Sbjct: 327 NAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLI-----YGLCDQKTEEAEELLN 381
Query: 259 DSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKRM 303
++ K+G P + TF +++ C AEK D L + K M
Sbjct: 382 NAV-------KEGFT-PTVVTFTNLINGYCMAEKFDDALRMKNKMM 419
>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
Length = 665
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 134/311 (43%), Gaps = 31/311 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y ++ G AG+ K+ + L KK + G + PD+V +N VL
Sbjct: 79 PTRTTYNNVINACGAAGNWKKALE-------LCKKMTENG--------VGPDLVTHNIVL 123
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+A Q+ A + +K T +++ ++ G+ E F +++
Sbjct: 124 SALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTK 183
Query: 124 --PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
P+ + Y ++++ G+ + + + M G+ + Y L S G EAL
Sbjct: 184 CPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREAL 243
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
+ I K +P +VSYT L+ A S + A +FN+M KN C PN V+ N ++ AY
Sbjct: 244 AIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAY 303
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
G+ +EA+ L EM +D + PD+ + +T+L AC ++ +E +
Sbjct: 304 GSAGMLKEAVGLLHEMEKDG------------IQPDVVSISTLLAACGRCRQITRIETIL 351
Query: 301 KRMLHHGLHFN 311
+ G+ N
Sbjct: 352 EAARSRGIDLN 362
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 139/305 (45%), Gaps = 19/305 (6%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
++ W R +PD +YN++++A R QW A +++ + + P+ TTY V+ A
Sbjct: 37 MQEW--RCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNNVINACGAA 94
Query: 106 GKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G + E +K+ ++ + P+ + + ++++ L + +A+S E M+ +
Sbjct: 95 GNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMKGANVTSDTFTL 154
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANK--PLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+ CL G+C EA+ + + + K P VV+YT ++ + G ++N IF+ M
Sbjct: 155 NIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLM 214
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
PN+V N ++ AY G+ EA+ +F + KK + PDI ++
Sbjct: 215 VAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLI------------KKNGLRPDIVSYT 262
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
++L+A + + V+ +M + N K ++DA + + + H
Sbjct: 263 SLLNAYGRSAQPEKAREVFNKMKKNSCKPN-KVSYNALIDAYGSAGMLKEAVGLLHEMEK 321
Query: 342 DRITP 346
D I P
Sbjct: 322 DGIQP 326
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 123/267 (46%), Gaps = 29/267 (10%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S P+ V+Y ++ G AG +KE ++ M K G ++PD+V +
Sbjct: 288 SCKPNKVSYNALIDAYGSAGMLKEAVGLLHEME-------KDG--------IQPDVVSIS 332
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
+L AC R +Q +L+ + +G + Y ++ L+ G Y E + +++S
Sbjct: 333 TLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRES 392
Query: 122 YI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ P+A+ Y +L++ + GK E++ EDM + + GK EA
Sbjct: 393 NVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSST------------KEGKLSEA 440
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKA 239
+ K P V++YT LIQA G + A +F +M+ N P+ + C+ +++A
Sbjct: 441 ESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEA 500
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINRE 266
+ + G E ++L + M + S +N++
Sbjct: 501 FNKGGEPERVLQLMEFMKKKSIPLNQK 527
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 121/283 (42%), Gaps = 30/283 (10%)
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
FF + P+A Y L++ R G+ A++ +EDM R I + Y ++ +
Sbjct: 34 FFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNNVINACGA 93
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
AG ++AL K+ + P +V++ ++ A + A F MK + + T
Sbjct: 94 AGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMKGANVTSDTFT 153
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
NI++ ++ G EA++LF M E ++ PD+ T+ +++ + +
Sbjct: 154 LNIIIHCLVKIGQCGEAIELFNSMRE----------RRTKCPPDVVTYTSIMHSYCIYGQ 203
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMI-LDASRAGKVELLEITWEHLARADRITPPALIK 351
++ + ++ M+ G+ N + ++ ASR E L I +L + + + P
Sbjct: 204 VENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIF--NLIKKNGLRP----- 256
Query: 352 ERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENS 394
D S S L ++ S PE +R + K K+NS
Sbjct: 257 ----------DIVSYTSLLNAYGRSAQPEKAREVFNK-MKKNS 288
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 13/169 (7%)
Query: 117 KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
K Q +Y Y +++ R + D+A +M+ A +Y L AG+
Sbjct: 2 KNQDNYCARNDIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQ 61
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNI 235
A+ M+ + + A P +Y +I AC +GN + A + +M +N P+LVT NI
Sbjct: 62 WRWAINIMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNI 121
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
++ A + +A+ F+ M K V D +T N ++
Sbjct: 122 VLSALKNGAQYSKAISYFEIM------------KGANVTSDTFTLNIII 158
>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 669
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 132/297 (44%), Gaps = 30/297 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y + + ++ E +V+D MR+ K T P+IV YN ++
Sbjct: 174 PSVVTYTVLLEAVCKSSGFGEAMNVLDEMRA------KGCT---------PNIVTYNVII 218
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N R + + A +L +L G +P +Y V++ + A +++ V F + V K +
Sbjct: 219 NGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCV 278
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + +LV R G + A+ ++ M + G + L + +C G+ ++A
Sbjct: 279 PNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDF 338
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + P +SYT +++ +G ++A + +M + C PN VT N + +
Sbjct: 339 LNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQ 398
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD-LEL 298
GL E+A+KL + M E + I T+N ++ + R D LEL
Sbjct: 399 KGLIEQAIKLIELMPEYGCSVG------------IVTYNALVHGFCVQGRVDSALEL 443
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/355 (23%), Positives = 155/355 (43%), Gaps = 42/355 (11%)
Query: 1 MSSY---PDTVAYRSIAVTLGQA---GHIKELFDVIDSMRSLPKK-------KF--KTGT 45
+SSY PD V+Y ++ L A +K LF + + +P + +F + G
Sbjct: 237 LSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGM 296
Query: 46 LERWDPRLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGL 97
+ER L+ P+ + N V+NA ++ + + A+ L + G P +Y
Sbjct: 297 VERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTT 356
Query: 98 VMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
V+ + G++ E + V+K+ PN + + + L ++G ++A+ +E M G
Sbjct: 357 VLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYG 416
Query: 157 IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
Y L C G+ + AL + + +P ++YT L+ + + AA
Sbjct: 417 CSVGIVTYNALVHGFCVQGRVDSALELFNNL---PCEPNTITYTTLLTGLCHAERLDAAA 473
Query: 217 YIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
+ M + C N VT N++V + + G EEAM+L +M E P
Sbjct: 474 ELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHG------------CTP 521
Query: 276 DIYTFNTMLDACAAEKRWDD-LELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++ TFNT+LD + ++ LEL++ ++ G+ + + ++ SR + E
Sbjct: 522 NLITFNTLLDGITKDCNSEEALELLHG-LVSKGVSLDTITYSSVVDVLSREDRTE 575
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/319 (18%), Positives = 121/319 (37%), Gaps = 57/319 (17%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+ + ++ RR + A VL+ + G Y ++ G+ +
Sbjct: 72 PDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLDAARRL 131
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ P+A Y ++ L G+ +A++ ++DM +RG S Y L +C +
Sbjct: 132 IASMPVP--PDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKS 189
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF--------- 225
EA+ +D++ P +V+Y +I G + +A I N++ ++
Sbjct: 190 SGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSY 249
Query: 226 ---------------------------CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
C PN VT +++V+ + G+ E A+++ Q+M++
Sbjct: 250 TTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQ 309
Query: 259 DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRM 318
P+ N +++A + R DD M +G + + + +
Sbjct: 310 HG------------CTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTV 357
Query: 319 ILDASRAGKVELLEITWEH 337
+ RAG+ WEH
Sbjct: 358 LRGLCRAGR-------WEH 369
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/274 (19%), Positives = 108/274 (39%), Gaps = 25/274 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLE------------RWDPR 52
P+ V + + L Q G I++ +I+ M P+ G + R D
Sbjct: 384 PNEVTFNTFICILCQKGLIEQAIKLIELM---PEYGCSVGIVTYNALVHGFCVQGRVDSA 440
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
LE P+ + Y +L ++ + A +L + Q+ +A T+ +++
Sbjct: 441 LELFNNLPCEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQ 500
Query: 105 CGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G E ++ + PN + + L++ + ++ ++EA+ + + +G+
Sbjct: 501 KGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTIT 560
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y + L + EEA+ + + + +P V Y ++ A A F M
Sbjct: 561 YSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMV 620
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
N C PN T I+++ GL +EA + E+
Sbjct: 621 SNGCMPNESTYIILIEGLAHEGLLKEARYVLSEL 654
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D + Y++V++ R + E A +L ++ G +P Y ++ + + + +FF
Sbjct: 557 DTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFF 616
Query: 116 R-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
V +PN Y +L+ L EG EA + ++ +G++ + L
Sbjct: 617 AYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKGVLSKSLL 665
>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
Length = 879
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 118/254 (46%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P A+R I AG +K D +D MR ++G + P ++ YNA++
Sbjct: 520 PSNRAFRPIIEGYAVAGDMKSALDTLDLMR-------RSGCV--------PTVMTYNALI 564
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ VR+ + + A VL ++ G P+ TY ++M A G +E+F K+++S +
Sbjct: 565 HGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLK 624
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ Y+ L+ + G+ A++ +M + I + +Y L G EA
Sbjct: 625 LDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDL 684
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
M ++ + P + +YT I AC +G++Q A + +M + PN+ T ++K +
Sbjct: 685 MKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWAR 744
Query: 243 HGLFEEAMKLFQEM 256
L + A+K F+EM
Sbjct: 745 VSLPDRALKCFEEM 758
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 124/274 (45%), Gaps = 14/274 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD +YN ++ A + + A +L++++++ +PS + ++E G
Sbjct: 483 LQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSAL 542
Query: 113 EFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +++S +P + Y L++ L R+ K AVS ++ M GI + Y + R
Sbjct: 543 DTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGY 602
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NL 230
++G +A KI + K V Y L++AC SG +Q+A + +M P N
Sbjct: 603 AASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNT 662
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
NI++ + G EA L ++M ED V P+I+T+ + ++AC
Sbjct: 663 FIYNILIDGWARRGDVWEAEDLMKQMKEDG------------VPPNIHTYTSYINACCKA 710
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASR 324
E V + M+ GL N K + +I +R
Sbjct: 711 GDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWAR 744
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/313 (20%), Positives = 127/313 (40%), Gaps = 49/313 (15%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK----- 107
++ I VY+++++ + V ++LK+ G KPS +YG ++ + + GK
Sbjct: 378 IDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKAL 437
Query: 108 -----------------YNLV-------------YEFFRKVQKSYI-PNALAYKVLVNTL 136
Y+++ + F ++ +S + P+ Y +L+
Sbjct: 438 SISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAF 497
Query: 137 WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV 196
+ G D A+ +E M++ + S + + AG + AL +D + + P V
Sbjct: 498 CKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTV 557
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
++Y LI + +Q A + ++M +PN T I+++ Y G +A + F +
Sbjct: 558 MTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTK 617
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
+ E GL + D+Y + T+L AC R V + M + N +
Sbjct: 618 IKES-----------GLKL-DVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIY 665
Query: 316 LRMILDASRAGKV 328
+I +R G V
Sbjct: 666 NILIDGWARRGDV 678
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 4/154 (2%)
Query: 108 YNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ V F ++ K P+ + +++ + G A + E+M RGI +A ++ L
Sbjct: 227 WQAVVSAFERIPK---PSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSL 283
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FC 226
A AL ++++ + +V+Y+ LI + Q+A +F + K
Sbjct: 284 VHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLS 343
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
S N + + ++ A+ + G E A +L +EM ED
Sbjct: 344 SLNGIIYSNIIHAHCQSGNMERAEELVREMEEDG 377
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/165 (18%), Positives = 67/165 (40%), Gaps = 1/165 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+ D+ +Y +L AC + + + A V +++ Q + Y ++++ G
Sbjct: 623 LKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAE 682
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +++++ +P N Y +N + G A +E+M G+ + Y L +
Sbjct: 683 DLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGW 742
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
+ AL +++ KP SY L+ + L + +
Sbjct: 743 ARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGS 787
>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
Length = 797
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 131/311 (42%), Gaps = 36/311 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM-----RSLPKKKFKTGTLERWDPRLEPDIVV 59
PD V+Y ++ +E +++ M RS P P++V
Sbjct: 163 PDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCP-----------------PNVVS 205
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-V 118
Y V+N Q + A+ + ++ +G +P+ TY V++ + + F++ +
Sbjct: 206 YAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMI 265
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
K P+ Y L++ GK E V +E+M G+ Y L LC+ G+C
Sbjct: 266 DKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCR 325
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMV 237
EA D + + KP V Y LI G + + N M +N SP+ NI+
Sbjct: 326 EARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIF 385
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
AY + + +EAM +F +M + +GL PD+ + ++DA R DD
Sbjct: 386 TAYAKKAMIDEAMHIFNKMKQ-----------QGLS-PDVVNYGALIDALCKLGRVDDAV 433
Query: 298 LVYKRMLHHGL 308
L + +M++ G+
Sbjct: 434 LKFNQMMNEGV 444
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 118/265 (44%), Gaps = 14/265 (5%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
LE D ++P++V Y V++ + + + A V QQ+ +G KP TY ++ L+
Sbjct: 227 LEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSI 286
Query: 106 GKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
GK+ V ++ + P+ Y L+N L G+ EA + M R+GI + A+Y
Sbjct: 287 GKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIY 346
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK- 223
L + G E ++ + + P + + A I A +IFN+MK
Sbjct: 347 GILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQ 406
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
SP++V ++ A + G ++A+ F +M + V P+I+ FN++
Sbjct: 407 QGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEG------------VAPNIFVFNSL 454
Query: 284 LDACAAEKRWDDLELVYKRMLHHGL 308
+ +W+ + Y ML+ G+
Sbjct: 455 VYGLCTVDKWEKAKEFYFEMLNQGI 479
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 95/214 (44%), Gaps = 2/214 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD+V Y A+++A + + + A Q+ +G P+ + ++ + K+
Sbjct: 409 LSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAK 468
Query: 113 EF-FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
EF F + + P+ + + ++ L +G+ +A ++ MER G Y L
Sbjct: 469 EFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGH 528
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C G+ +EA +D + V KP +Y L+ +G I +A +F +M +N +P +
Sbjct: 529 CLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGV 588
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
VT + ++ F EA +L+ M N
Sbjct: 589 VTYSTILHGLFTTRRFSEAKELYLNMITSGKQWN 622
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/344 (19%), Positives = 132/344 (38%), Gaps = 64/344 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y S+ L G +E + DSM + G ++P++ +Y ++
Sbjct: 306 PDCYTYGSLLNYLCNNGRCREARFLFDSM-------IRKG--------IKPNVAIYGILI 350
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + +L + + G P + ++ + F K+ Q+
Sbjct: 351 HGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLS 410
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA--- 180
P+ + Y L++ L + G+ D+AV M G+ + ++ L LC+ K E+A
Sbjct: 411 PDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEF 470
Query: 181 ----------------------------LMQ----MDKICKVANKPLVVSYTGLIQACLD 208
+M+ +D + +V +P V+SYT LI
Sbjct: 471 YFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCL 530
Query: 209 SGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
G I AA + M + P+ T N ++ Y G ++A +F+EM +
Sbjct: 531 VGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNG------- 583
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
+ P + T++T+L +R+ + + +Y M+ G +N
Sbjct: 584 -----ITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWN 622
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 117/282 (41%), Gaps = 31/282 (10%)
Query: 84 KQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTD 143
+ G++ S T LV+ +L R+ P+ Y +L+ R G+ +
Sbjct: 61 RVSGRRSSTTESELVV---------SLFNRMIRECTIKVTPDPCTYSILIGCFCRMGRLE 111
Query: 144 EAVSAVEDMERRGIVGSAALYYDLARCLCSAGK-CEEALMQMDKICKVANKPLVVSYTGL 202
+ + + G + + L + LC A + CE + + ++ ++ P VVSY L
Sbjct: 112 HGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAMDILVKRMPELGCTPDVVSYNTL 171
Query: 203 IQACLDSGNIQNAAYIFNQMKN----FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
++ + + A + + M + C PN+V+ I++ + G ++A LF EM +
Sbjct: 172 LKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMD 231
Query: 259 DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRM 318
+ P++ T+ T++D + D E V+++M+ G+ + + +
Sbjct: 232 RG------------IQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCL 279
Query: 319 ILDASRAGK----VELLEITWEHLARADRITPPALIKERFCN 356
I GK V +LE H + D T +L+ CN
Sbjct: 280 IHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLN-YLCN 320
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/262 (20%), Positives = 105/262 (40%), Gaps = 17/262 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + +I L G + + +ID M ER R P ++ Y ++
Sbjct: 481 PDVVFFNTILCNLCTKGQVMKAQRLIDLM-------------ERVGTR--PGVISYTTLI 525
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + A L + G KP TY ++ G+ + Y FR++ ++ I
Sbjct: 526 GGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGIT 585
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y +++ L+ + EA +M G + +Y + L +EA
Sbjct: 586 PGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKL 645
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+C + + ++ +I A SG ++A ++F + ++ P++ T ++ + +E
Sbjct: 646 FQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIE 705
Query: 243 HGLFEEAMKLFQEMAEDSNHIN 264
G EE LF M + N
Sbjct: 706 EGYLEEFDDLFSAMEKSGTTPN 727
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 1/126 (0%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
+I +YN +LN + + AF + Q L + + TT+ +++ + G+ F
Sbjct: 622 NIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLF 681
Query: 116 RKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ +P+ Y ++ L EG +E ME+ G ++ + L R L
Sbjct: 682 ATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHR 741
Query: 175 GKCEEA 180
G A
Sbjct: 742 GDITRA 747
>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
Length = 901
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 118/254 (46%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P A+R I AG +K D +D MR ++G + P ++ YNA++
Sbjct: 542 PSNRAFRPIIEGYAVAGDMKSALDTLDLMR-------RSGCV--------PTVMTYNALI 586
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ VR+ + + A VL ++ G P+ TY ++M A G +E+F K+++S +
Sbjct: 587 HGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLK 646
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ Y+ L+ + G+ A++ +M + I + +Y L G EA
Sbjct: 647 LDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDL 706
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
M ++ + P + +YT I AC +G++Q A + +M + PN+ T ++K +
Sbjct: 707 MKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWAR 766
Query: 243 HGLFEEAMKLFQEM 256
L + A+K F+EM
Sbjct: 767 VSLPDRALKCFEEM 780
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 124/274 (45%), Gaps = 14/274 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD +YN ++ A + + A +L++++++ +PS + ++E G
Sbjct: 505 LQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSAL 564
Query: 113 EFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +++S +P + Y L++ L R+ K AVS ++ M GI + Y + R
Sbjct: 565 DTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGY 624
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NL 230
++G +A KI + K V Y L++AC SG +Q+A + +M P N
Sbjct: 625 AASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNT 684
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
NI++ + G EA L ++M ED V P+I+T+ + ++AC
Sbjct: 685 FIYNILIDGWARRGDVWEAEDLMKQMKEDG------------VPPNIHTYTSYINACCKA 732
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASR 324
E V + M+ GL N K + +I +R
Sbjct: 733 GDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWAR 766
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/313 (20%), Positives = 127/313 (40%), Gaps = 49/313 (15%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK----- 107
++ I VY+++++ + V ++LK+ G KPS +YG ++ + + GK
Sbjct: 400 IDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKAL 459
Query: 108 -----------------YNLV-------------YEFFRKVQKSYI-PNALAYKVLVNTL 136
Y+++ + F ++ +S + P+ Y +L+
Sbjct: 460 SISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAF 519
Query: 137 WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV 196
+ G D A+ +E M++ + S + + AG + AL +D + + P V
Sbjct: 520 CKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTV 579
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
++Y LI + +Q A + ++M +PN T I+++ Y G +A + F +
Sbjct: 580 MTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTK 639
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
+ E GL + D+Y + T+L AC R V + M + N +
Sbjct: 640 IKES-----------GLKL-DVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIY 687
Query: 316 LRMILDASRAGKV 328
+I +R G V
Sbjct: 688 NILIDGWARRGDV 700
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 4/154 (2%)
Query: 108 YNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ V F ++ K P+ + +++ + G A + E+M RGI +A ++ L
Sbjct: 249 WQAVVSAFERIPK---PSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSL 305
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FC 226
A AL ++++ + +V+Y+ LI + Q+A +F + K
Sbjct: 306 VHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLS 365
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
S N + + ++ A+ + G E A +L +EM ED
Sbjct: 366 SLNGIIYSNIIHAHCQSGNMERAEELVREMEEDG 399
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/165 (18%), Positives = 67/165 (40%), Gaps = 1/165 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+ D+ +Y +L AC + + + A V +++ Q + Y ++++ G
Sbjct: 645 LKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAE 704
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +++++ +P N Y +N + G A +E+M G+ + Y L +
Sbjct: 705 DLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGW 764
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
+ AL +++ KP SY L+ + L + +
Sbjct: 765 ARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGS 809
>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
Length = 432
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 146/344 (42%), Gaps = 44/344 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKK---FKTGTL-------ERWDPR-- 52
PD V+Y ++ L + G + FD+ M + + F L +R D
Sbjct: 94 PDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARA 153
Query: 53 ---------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
PD+V YN ++ A + + + A Q+ ++G P+ ++ ++ +
Sbjct: 154 VITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLC 213
Query: 104 ACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+ E F + + + + PN + Y V+++ L + + DEA ++ M G
Sbjct: 214 RARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLV 273
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y L +AG+ + AL + ++ P VV+YT +I G + +A IF ++
Sbjct: 274 AYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFREL 333
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
N CSPN+VT + ++ Y +E K+ +EMA P++ T+N
Sbjct: 334 VANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMA---------------CRPNVVTYN 378
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNA------KRHLRMI 319
TM+ + R ++ +++ M G +A KR LRMI
Sbjct: 379 TMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRALRMI 422
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 129/292 (44%), Gaps = 20/292 (6%)
Query: 46 LERWDPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVM 99
LE +D LE PD+V Y ++N + + + AF + +++ G +P+A TY ++
Sbjct: 80 LEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALV 139
Query: 100 EVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ + + + + +K + P+ + Y L+ L++ G+ DEA++ M G V
Sbjct: 140 DGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYV 199
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
+ + + LC A + +AL +++ P +V+Y+ +I S + A +
Sbjct: 200 PTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQL 259
Query: 219 FNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI 277
++M C P+LV +V + G + A+ L + M IPD+
Sbjct: 260 LDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQG------------CIPDV 307
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
T+ ++D R DD +++ ++ + N + +I RA +V+
Sbjct: 308 VTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVD 359
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 104/248 (41%), Gaps = 26/248 (10%)
Query: 102 MLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
M+ G +N + FR+ +++ Y VL+ D A S + +M+ G+ +
Sbjct: 1 MVRAGSHNQALQLFRENPCQLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCND 60
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFN 220
+ + LC G+ +AL D ++A+ +P VVSYT LI G + A +F
Sbjct: 61 RTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFR 120
Query: 221 QM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
+M C PN T N +V + + A + E +K PD+
Sbjct: 121 KMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEA------------RKRDFAPDVV 168
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHG-----LHFNAKRHLRMILDASRAGKV-ELLE 332
T+NT++ A R D+ + +M G + FNA +I RA ++ + LE
Sbjct: 169 TYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNA-----IITGLCRARRLADALE 223
Query: 333 ITWEHLAR 340
+ E + R
Sbjct: 224 VFNEMIDR 231
>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
Length = 987
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 132/321 (41%), Gaps = 35/321 (10%)
Query: 5 PDTVAYRSIA---VTLGQAGHIKELFDVIDSMRSLP---------------KKKFKTGTL 46
P+ V Y SI +G G E+F +++ P KK K L
Sbjct: 456 PNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMAL 515
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ + + P ++ Y ++ ++ +++ AF + + +++ G P Y ++ + +
Sbjct: 516 ITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCK 575
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G+ Y F V+K + + Y LV+ + G TD A +E M G Y
Sbjct: 576 SGRAEEAYSFL--VRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTY 633
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-K 223
L + LC K EAL +D++ K +V+YT +I + G +A +FN+M
Sbjct: 634 SVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMIS 693
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
+ P+ T + + +Y + G EEA L EM D V PD+ T++
Sbjct: 694 SGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDG------------VTPDVVTYHIF 741
Query: 284 LDACAAEKRWDDLELVYKRML 304
++ C D KRM+
Sbjct: 742 INGCGHMGYMDRAFSTLKRMV 762
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 136/319 (42%), Gaps = 18/319 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + L P++V+Y ++++ + A V + ++ +G P+A TYG ++ ++
Sbjct: 448 EMFANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDK 507
Query: 107 KYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K + K+Q+ I P +AY L+ ++ + D A E ME+ G+ Y
Sbjct: 508 KLHKAMALITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYN 567
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN- 224
L LC +G+ EEA + + V K V+YT L+ +GN AA + +M N
Sbjct: 568 VLTDALCKSGRAEEAYSFLVRKGVVLTK---VTYTSLVDGFSKAGNTDFAAVLIEKMVNE 624
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
C +L T +++++A + EA+ + +M N I + ++
Sbjct: 625 GCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCN------------IVAYTIII 672
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI 344
E + D + ++ M+ G +A + I + G++E E + R D +
Sbjct: 673 SEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMER-DGV 731
Query: 345 TPPALIKERFCNRLENKDY 363
TP + F N + Y
Sbjct: 732 TPDVVTYHIFINGCGHMGY 750
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 84/403 (20%), Positives = 158/403 (39%), Gaps = 64/403 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFD----------------VIDSMRSLPKKKFKTGTLER 48
PD AY + L ++G +E + ++D F +E+
Sbjct: 561 PDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEK 620
Query: 49 W-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK 107
+ + D+ Y+ +L A ++K+ A +L Q+ G K + Y +++ M+ GK
Sbjct: 621 MVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGK 680
Query: 108 YNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
++ F + + + P+A Y V +++ + G+ +EA + +MER G+ Y+
Sbjct: 681 HDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHI 740
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ----- 221
G + A + ++ + +P +Y L++ L I NA YI
Sbjct: 741 FINGCGHMGYMDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLI-NAHYIDTSGMWNW 799
Query: 222 -------------MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD 268
MK+ +P +VT + ++ + + EEA L M + N E
Sbjct: 800 IELNTVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKAISPNEE-- 857
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRW--DDLELVYKRMLHHGLHFNAKRHLRMIL------ 320
IY TML C + + D+ V M+ G + + +I+
Sbjct: 858 --------IY---TMLIKCCCDIKLFGKDVSFV-TDMIEFGFQPQLESYHYLIVGLCDEG 905
Query: 321 DASRAGKV--ELLEITWEHLARADRITPPALIKE---RFCNRL 358
D RA + +LL + + H A +I L+K FC++L
Sbjct: 906 DYDRAKSLFCDLLGMDYNHNEVAWKILNDGLLKAGHVDFCSQL 948
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/255 (20%), Positives = 106/255 (41%), Gaps = 17/255 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P ++ + ++N + ++ + A V + K YG+++ V++ + E
Sbjct: 386 PTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKET 445
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ PN + Y +++ + G A+ + ME G +A Y L L
Sbjct: 446 LNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQ 505
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
K +A+ + K+ + P V++YT LIQ NA +F M KN +P+
Sbjct: 506 DKKLHKAMALITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQA 565
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N++ A + G EEA +KG+V+ + T+ +++D +
Sbjct: 566 YNVLTDALCKSGRAEEAYSFLV--------------RKGVVLTKV-TYTSLVDGFSKAGN 610
Query: 293 WDDLELVYKRMLHHG 307
D ++ ++M++ G
Sbjct: 611 TDFAAVLIEKMVNEG 625
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 71/346 (20%), Positives = 138/346 (39%), Gaps = 67/346 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV Y ++ + + G + ++ + F L R + ++ D NA+L
Sbjct: 177 PDTVTYNTMIMAYCKKGSL-----------AIAHRYF---CLLR-ESGMQMDTYTCNALL 221
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA--CGKYNLVYEFFRKVQKSY 122
R A W+L + G + + +Y ++++ + C + LV F VQ
Sbjct: 222 LGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLYEARCVREALVL-VFMMVQDGC 280
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL- 181
N Y +L+ L +EG+ +A +++M RG+V S Y + C +G+ ++AL
Sbjct: 281 SLNLHMYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALG 340
Query: 182 --------------------------MQMDKICKVAN-------KPLVVSYTGLIQACLD 208
++D+ ++ N P V+++T LI
Sbjct: 341 IKALMEQNGCNPDDWTYNSLIYGLCGGKLDEAEELLNGAIARGFTPTVITFTNLINGYCK 400
Query: 209 SGNIQNAAYI-FNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
+ I +A + N + + C +L +++ ++ +EA + EM +
Sbjct: 401 AERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANG------- 453
Query: 268 DKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKRMLHHGLHFNA 312
+ P++ + +++D C LE V+K M H G H NA
Sbjct: 454 -----LAPNVVIYTSIIDGYCKVGMVGAALE-VFKLMEHEGCHPNA 493
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 123/324 (37%), Gaps = 62/324 (19%)
Query: 18 GQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAF 77
G A ++E D I ++R + K+ L P YN L + +R E
Sbjct: 117 GTAEDVREAVDAIQAIRRVGGKRLV----------LSPK--CYNLALRSLLRFDMTEYMG 164
Query: 78 WVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS------YIPNAL---- 127
+ L Q+G P TY ++ G + + +F +++S Y NAL
Sbjct: 165 KLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGY 224
Query: 128 --------------------------AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
+Y +L+ L+ EA+ V M + G +
Sbjct: 225 CRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLYEARCVREALVLVFMMVQDGCSLNL 284
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
+Y L + LC G+ +A +D++ P V +Y +I SG +++A I
Sbjct: 285 HMYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKAL 344
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
M +N C+P+ T N ++ L G +EA +L + I R + P + TF
Sbjct: 345 MEQNGCNPDDWTYNSLIYG-LCGGKLDEAEELL------NGAIARGF------TPTVITF 391
Query: 281 NTMLDACAAEKRWDDLELVYKRML 304
+++ +R DD V M+
Sbjct: 392 TNLINGYCKAERIDDALRVKSNMI 415
>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 901
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 128/279 (45%), Gaps = 15/279 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L DIV+YN ++ + + + A+ ++K G P TY ++ V+ + +
Sbjct: 264 LHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAV 323
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F ++ Q +P A AY ++ GK DEA S +E + RG + S Y + CL
Sbjct: 324 EIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCL 383
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
G+ EAL +++ K A P + +Y LI +G ++ A + + MK PN+
Sbjct: 384 GKKGRLGEALRTFEEMKKDA-APNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNV 442
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T NIM+ + +EA +F+ M NH + PD TF +++D +
Sbjct: 443 MTVNIMIDRLCKAKKLDEACSIFEGM----NH--------KICSPDEVTFCSLIDGLGKQ 490
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
R DD +Y++ML NA + +I + G+ E
Sbjct: 491 GRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKE 529
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 83/382 (21%), Positives = 158/382 (41%), Gaps = 38/382 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSL---PKKKFKTGTLERWDPRLEPDIVV-- 59
P T + ++ ++ ++E FD+I MR P T + E DI++
Sbjct: 161 PSTKTCIELILSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGALSSVQESDIMLTL 220
Query: 60 ---------------YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ V+ R + + A +L ++K Y + ++
Sbjct: 221 FHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGK 280
Query: 105 CGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK ++ ++FF +++ +P+ + Y ++ L + + DEAV E ME+ V A
Sbjct: 281 AGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYA 340
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + SAGK +EA +++ P V++Y ++ G + A F +MK
Sbjct: 341 YNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMK 400
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
+PNL T N+++ + G E A K+ R+ K+ + P++ T N M
Sbjct: 401 KDAAPNLSTYNVLIDMLCKAGEVEAAFKV------------RDAMKEAGLFPNVMTVNIM 448
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADR 343
+D K+ D+ +++ M H + +I + G+V+ +E + +D+
Sbjct: 449 IDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDK 508
Query: 344 I----TPPALIKERF-CNRLEN 360
I +LIK F C R E+
Sbjct: 509 IPNAVVYTSLIKSFFKCGRKED 530
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/301 (19%), Positives = 130/301 (43%), Gaps = 29/301 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + S+ LG+ G + + + + + M D P+ VVY +++
Sbjct: 475 PDEVTFCSLIDGLGKQGRVDDAYRLYEQM---------------LDSDKIPNAVVYTSLI 519
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ + + E + +++ +G P M+ + G+ F +++ + +I
Sbjct: 520 KSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFI 579
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++Y +L++ L + G E M+ +G V Y C +GK +A
Sbjct: 580 PDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQL 639
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
++++ +P VV+Y +I + A +F + K N N+V + ++ + +
Sbjct: 640 LEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGK 699
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +EA + +E+ + KGL P++YT+N +LDA + ++ + ++
Sbjct: 700 VGRIDEAYLIMEELMQ-----------KGLT-PNVYTWNCLLDALVKAEEINEALVCFQN 747
Query: 303 M 303
M
Sbjct: 748 M 748
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/344 (19%), Positives = 145/344 (42%), Gaps = 30/344 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y + L +AG ++ F V D+M+ + L P+++ N ++
Sbjct: 405 PNLSTYNVLIDMLCKAGEVEAAFKVRDAMK---------------EAGLFPNVMTVNIMI 449
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YI 123
+ + K+ + A + + + + P T+ +++ + G+ + Y + ++ S I
Sbjct: 450 DRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKI 509
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PNA+ Y L+ + ++ G+ ++ ++M RG L C+ AG+ +
Sbjct: 510 PNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRAL 569
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
++I P V+SY+ LI + +G + +F MK C + N + + +
Sbjct: 570 FEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCK 629
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +A +L +EM P + T+ +++D A R D+ ++++
Sbjct: 630 SGKVNKAYQLLEEMKTKGRQ------------PTVVTYGSVIDGLAKIDRLDEAYMLFEE 677
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
+GL N + +I + G+++ + E L + +TP
Sbjct: 678 AKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKG-LTP 720
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 107/253 (42%), Gaps = 16/253 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ L + + E ++ + M R P YN ++
Sbjct: 301 PDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQ---------------NRNVPCAYAYNTMI 345
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+++ A+ +L++ K +G PS Y ++ + G+ F +++K P
Sbjct: 346 MGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDAAP 405
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N Y VL++ L + G+ + A + M+ G+ + + LC A K +EA
Sbjct: 406 NLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIF 465
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEH 243
+ + P V++ LI G + +A ++ QM + PN V ++K++ +
Sbjct: 466 EGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKC 525
Query: 244 GLFEEAMKLFQEM 256
G E+ K+F+EM
Sbjct: 526 GRKEDGHKIFKEM 538
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/252 (20%), Positives = 113/252 (44%), Gaps = 17/252 (6%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
DT AY + ++G + + + +++ M++ + +P +V Y +V++
Sbjct: 616 DTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGR---------------QPTVVTYGSVID 660
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIP 124
+ + + A+ + ++ K G + + Y +++ G+ + Y ++ QK P
Sbjct: 661 GLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP 720
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N + L++ L + + +EA+ ++M+ + Y L LC K +A +
Sbjct: 721 NVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFW 780
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEH 243
++ K KP ++YT +I +GNI A+ +F + K N P+ + N +++
Sbjct: 781 QEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYS 840
Query: 244 GLFEEAMKLFQE 255
EA K+F+E
Sbjct: 841 RRAMEAYKIFEE 852
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/268 (20%), Positives = 120/268 (44%), Gaps = 21/268 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y S+ L + + E + + + +S LE ++V+Y++++
Sbjct: 650 PTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS---------------NGLELNVVIYSSLI 694
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ + + + A+ ++++L Q+G P+ T+ +++ ++ + N F+ ++
Sbjct: 695 DGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGT 754
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y +L+N L R K ++A ++M+++G+ + Y + L AG EA
Sbjct: 755 PNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSL 814
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
++ P SY +I+ S A IF + + C+ + TC ++ A +
Sbjct: 815 FERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKGCNIHTKTCIALLDALQK 874
Query: 243 HGLFEEAM---KLFQEMAEDSNHINREY 267
E+A + +E+A+ S H R +
Sbjct: 875 DECLEQAAIVGAVLREIAK-SQHAARSW 901
>gi|449438016|ref|XP_004136786.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Cucumis sativus]
Length = 707
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 141/331 (42%), Gaps = 36/331 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLP--KKKFKT-----GTLERW------ 49
PD Y ++ G+AG + ++++ M ++P + F G+ W
Sbjct: 63 PDVETYNALINAHGRAGQWRWATNIMEDMLRAAIPPSRSTFNNLINACGSCGNWREALRV 122
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
D + PD+V +N VL+A Q+ A + +K +P TT +V+ ++
Sbjct: 123 CKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFELMKGTNIRPDTTTLNIVIHCLIK 182
Query: 105 CGKYNLVYEFF---RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
+Y E F R+ + P+ + + +++ G+ ++ + M GI +
Sbjct: 183 VKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNI 242
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L S G +EA D++ + P VVSYT LI S A +F+
Sbjct: 243 VSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDM 302
Query: 222 MK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
MK N C PNLV+ N ++ AY +G +A+ + +EM +D H P++ +
Sbjct: 303 MKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIH------------PNVVSI 350
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
T+L AC + +++ V G+H N
Sbjct: 351 CTLLAACGRFGQKVNIDSVLSAAELRGIHLN 381
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/310 (20%), Positives = 133/310 (42%), Gaps = 31/310 (10%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
+++W R +PD+ YNA++NA R QW A +++ + + PS +T+ ++ +C
Sbjct: 56 MQKW--RCKPDVETYNALINAHGRAGQWRWATNIMEDMLRAAIPPSRSTFNNLINACGSC 113
Query: 106 GKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G + +K+ + + P+ + + ++++ + +A+S E M+ I
Sbjct: 114 GNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFELMKGTNIRPDTTTL 173
Query: 165 YDLARCLCSA---GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
+ CL G+ E M + + +P VV++T +I G I++ +F+
Sbjct: 174 NIVIHCLIKVKQYGQAIEIFSSMREK-RSECRPDVVTFTSIIHLYSVRGQIEDCKAVFST 232
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM---------------------AED 259
M PN+V+ N ++ AY HG+ +EA +F EM ++
Sbjct: 233 MLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQ 292
Query: 260 SNHINREYD--KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
+D K+ P++ ++N ++DA + + + M G+H N
Sbjct: 293 PARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICT 352
Query: 318 MILDASRAGK 327
++ R G+
Sbjct: 353 LLAACGRFGQ 362
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/352 (20%), Positives = 146/352 (41%), Gaps = 31/352 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT + L + + ++ SMR +R + R PD+V + +++
Sbjct: 168 PDTTTLNIVIHCLIKVKQYGQAIEIFSSMRE-----------KRSECR--PDVVTFTSII 214
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YI 123
+ R Q E V + +G KP+ +Y ++ + G + F ++++S +
Sbjct: 215 HLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFC 274
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++Y L++T R + A + M+R + Y L S G +A+
Sbjct: 275 PDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDI 334
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ ++ + P VVS L+ AC G N + + + N + CN + +Y+
Sbjct: 335 LREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMN 394
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +E+A+ L++ M + PD TF ++ C ++++ +K
Sbjct: 395 IGEYEKAINLYRSMENKTTK------------PDSVTFTILISGCCRMSKYEEALCFFKE 442
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA----DRITPPALI 350
ML + +++ + MI S+ G++ E + L + D +T A+I
Sbjct: 443 MLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMI 494
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 130/312 (41%), Gaps = 33/312 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V+Y ++ G KE F V D M+ ++G PD+V Y +++
Sbjct: 240 PNIVSYNALISAYASHGMDKEAFSVFDEMK-------RSG--------FCPDVVSYTSLI 284
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ R +Q A V +K+ KP+ +Y +M+ + G + R++++ I
Sbjct: 285 STFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIH 344
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN ++ L+ R G+ S + E RGI + + G+ E+A+
Sbjct: 345 PNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINL 404
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNI---MVKAY 240
+ KP V++T LI C + A F +M + P ++ I M+ AY
Sbjct: 405 YRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIP--LSSEIYSSMICAY 462
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ G +A LF + K PD+ T+ M++A +A + W+ + +Y
Sbjct: 463 SKQGQLVKAESLFNSL------------KGSGCCPDLVTYTAMINAYSASEMWEKVCALY 510
Query: 301 KRMLHHGLHFNA 312
+ M + + ++
Sbjct: 511 QEMEANNIQLDS 522
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/357 (21%), Positives = 147/357 (41%), Gaps = 50/357 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y S+ T G++ +V D M+ + +P++V YNA++
Sbjct: 275 PDVVSYTSLISTFGRSQQPARAREVFDMMKR---------------NKCKPNLVSYNALM 319
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY----NLVYEFFRKVQK 120
+A A +L++++Q G P+ + + ++ ACG++ N+ +
Sbjct: 320 DAYGSNGYLPQAVDILREMEQDGIHPNVVS---ICTLLAACGRFGQKVNIDSVLSAAELR 376
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
N +A + + G+ ++A++ ME + + + L C K EEA
Sbjct: 377 GIHLNTIACNSAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEA 436
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKA 239
L ++ + Y+ +I A G + A +FN +K + C P+LVT M+ A
Sbjct: 437 LCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINA 496
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHIN--------REYDKKG-----LVIPDIY-------- 278
Y ++E+ L+QEM ++ ++ + ++K L++ +I
Sbjct: 497 YSASEMWEKVCALYQEMEANNIQLDSIACSALMKAFNKGNQASNVLILAEIMKEKGIPFN 556
Query: 279 --TFNTMLDACAAEKRWDDLELVYKRM--LHHGLHFNAKRHLRMILDASRAGKVELL 331
F ML AC+ + W + M H + HL L ++GK E++
Sbjct: 557 DANFFEMLSACSILRDWRKATDLINLMEPSFHLVSLGTINHLLQFL--GKSGKTEIM 611
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 11/199 (5%)
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
FF + P+ Y L+N R G+ A + +EDM R I S + + +L S
Sbjct: 53 FFEMQKWRCKPDVETYNALINAHGRAGQWRWATNIMEDMLRAAIPPSRSTFNNLINACGS 112
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
G EAL K+ P +V++ ++ A A F MK P+ T
Sbjct: 113 CGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFELMKGTNIRPDTTT 172
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
NI++ ++ + +A+++F M E K+ PD+ TF +++ + +
Sbjct: 173 LNIVIHCLIKVKQYGQAIEIFSSMRE----------KRSECRPDVVTFTSIIHLYSVRGQ 222
Query: 293 WDDLELVYKRMLHHGLHFN 311
+D + V+ ML G+ N
Sbjct: 223 IEDCKAVFSTMLAEGIKPN 241
>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
Length = 991
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 124/300 (41%), Gaps = 28/300 (9%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+++ Y +L ++ AF + + ++Q G KP Y ++ + + G+ Y F
Sbjct: 530 PNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSF 589
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
V+K + Y L++ + G TD A + +E M G + Y L LC
Sbjct: 590 I--VRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQ 647
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTC 233
+ EAL +D++ K + +YT LI L G +A ++N+M + P+ T
Sbjct: 648 KRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTY 707
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
+ + +Y + G E+A L +M + V PD+ T+N ++D C
Sbjct: 708 TVFINSYCKEGRLEDAEDLILKMEREG------------VAPDVVTYNILIDGCGHMGYI 755
Query: 294 DDLELVYKRMLHHGLHFN-----------AKRHLRMILDASRAGKVELLE--ITWEHLAR 340
D KRM+ N K +L + +G L+E ITW+ L R
Sbjct: 756 DRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLER 815
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 123/279 (44%), Gaps = 17/279 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P+++ Y ++++ + + + A VL+ +++ G +P+A TY +M ++ K +
Sbjct: 458 LVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAM 517
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
K+QK IPN + Y L+ E D A E ME+ G+ Y L L
Sbjct: 518 ALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDAL 577
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C AG+ EEA + + K V YT LI +GN AA + +M C+P+
Sbjct: 578 CKAGRAEEAYSFIVRKGVALTK---VYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDS 634
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T ++++ A + EA+ + +M+ +G+ I+ + ++D E
Sbjct: 635 YTYSVLLHALCKQKRLNEALPILDQMS-----------LRGIKCT-IFAYTILIDEMLRE 682
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ D + +Y M G +A + I + G++E
Sbjct: 683 GKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLE 721
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 21/206 (10%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V YN +++ C + AF L+++ +P+ TY L+++ +L K NL Y
Sbjct: 737 PDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLL---KGNLAY-- 791
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
R V S +W + D +E M + G+ + Y L C A
Sbjct: 792 VRSVDTS-------------GMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKA 838
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--PNLVT 232
G+ EEA + +D +C P YT LI+ C D+ + A + M C P L +
Sbjct: 839 GRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSE-CGFQPQLES 897
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAE 258
++V G FE+ LF ++ E
Sbjct: 898 YRLLVVGLCNEGDFEKVKSLFCDLLE 923
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 121/297 (40%), Gaps = 26/297 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P +V + ++N ++++ A + ++ K +G ++ ++ + E
Sbjct: 390 PTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKEL 449
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ +PN + Y +++ + GK D A+ ++ MER G +A Y L L
Sbjct: 450 LNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVK 509
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
K +A+ + K+ K P V++YT L+Q D + NA +F M +N P+
Sbjct: 510 DKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHA 569
Query: 233 CNIMVKAYLEHGLFEEA----------------MKLFQEMAEDSNH------INREYDKK 270
++ A + G EEA L ++ N I R D+
Sbjct: 570 YAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEG 629
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
PD YT++ +L A +KR ++ + +M G+ + +I + R GK
Sbjct: 630 --CTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGK 684
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 101/242 (41%), Gaps = 14/242 (5%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
YN L + R E V QL Q G P TY +++ G + FR +
Sbjct: 151 YNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLL 210
Query: 120 KSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ + P LV R G+ +A M G + Y L + LC A
Sbjct: 211 EGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVR 270
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMV 237
EAL+ + + P V ++T LI SG + +A +F+ M +N P+++T N M+
Sbjct: 271 EALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMI 330
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
Y + G +A+K+ + M ++ H PD +T+NT++ +K + E
Sbjct: 331 VGYSKLGRMNDALKIKELMEKNGCH------------PDDWTYNTLIYGLCDQKTEEAEE 378
Query: 298 LV 299
L+
Sbjct: 379 LL 380
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 115/277 (41%), Gaps = 15/277 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P ++ YNA++ + + A + + +++ G P TY ++ L K E
Sbjct: 321 PSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLI-YGLCDQKTEEAEEL 379
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
V++ + P + + L+N K D+A+ M ++ L L
Sbjct: 380 LNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIK 439
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+ +EA +++I P V++YT +I SG + A + M ++ C PN T
Sbjct: 440 KDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWT 499
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ ++ +AM L +M +D +IP++ T+ T+L E
Sbjct: 500 YNSLMYGLVKDKKLHKAMALLTKMQKDG------------IIPNVITYTTLLQGQCDEHD 547
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+D+ +++ M +GL + + + +AG+ E
Sbjct: 548 FDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAE 584
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/280 (19%), Positives = 116/280 (41%), Gaps = 15/280 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML--ACGKYNL 110
LEP+ NA++ R + A W+ + G + + +Y ++++ + C + L
Sbjct: 214 LEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVREAL 273
Query: 111 VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
V F + PN A+ L++ L + G+ +A + M + G+V S Y +
Sbjct: 274 VL-FLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVG 332
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNL 230
G+ +AL + + K P +Y LI D + + N +K +P +
Sbjct: 333 YSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTV 392
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT ++ Y F++A+++ +M + D+ F ++++ +
Sbjct: 393 VTFTNLINGYCMAEKFDDALRMKNKMMSSKCKL------------DLQVFGKLINSLIKK 440
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
R + + + + +GL N + +I ++GKV++
Sbjct: 441 DRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDI 480
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 114/286 (39%), Gaps = 36/286 (12%)
Query: 27 FDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ 86
FD+ + M + + + G L PD V YN ++ + + A + L +
Sbjct: 161 FDMTEYMGRVYSQLVQDGLL--------PDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEG 212
Query: 87 GQKPSATT-------YGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWRE 139
G +P T Y E+ AC + F N +Y +L+ L
Sbjct: 213 GLEPETFTCNALVLGYCRTGELRKAC------WLFLMMPLMGCQRNEYSYTILIQGLCEA 266
Query: 140 GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSY 199
EA+ M+R G + + L LC +G+ +A + D + + P V++Y
Sbjct: 267 KCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTY 326
Query: 200 TGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
+I G + +A I M KN C P+ T N ++ +GL ++ + +E+
Sbjct: 327 NAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLI-----YGLCDQKTEEAEELLN 381
Query: 259 DSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKRM 303
++ K+G P + TF +++ C AEK D L + K M
Sbjct: 382 NAV-------KEGFT-PTVVTFTNLINGYCMAEKFDDALRMKNKMM 419
>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 128/299 (42%), Gaps = 28/299 (9%)
Query: 55 PDIVVYNAVLNACVRRKQ-WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
P ++ YN +LN + W ++ +K G P TY ++ Y E
Sbjct: 253 PTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAE 312
Query: 114 FFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F +++ + + P+ + Y L++ + + EA+ +++ME G S Y L
Sbjct: 313 VFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYA 372
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLV 231
G +EA+ ++ K KP V +YT L+ +G A +F +M+ C PN+
Sbjct: 373 RDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNIC 432
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQE------------------------MAEDSNHINREY 267
T N ++K + G F E MK+F+E M + + + +E
Sbjct: 433 TFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 492
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+ G V P+ TFNT++ A + +D +Y+RML G+ + + ++ +R G
Sbjct: 493 KRAGFV-PERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGG 550
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/351 (21%), Positives = 141/351 (40%), Gaps = 75/351 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKK-FKT--------GTLER---- 48
PD V + ++ GQ G E+ V M+ +P++ F T G ++
Sbjct: 464 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAI 523
Query: 49 ----WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG-------- 96
D + PD+ YNAVL A R WE + VL ++K KP+ TY
Sbjct: 524 YRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYAN 583
Query: 97 ------------------------LVMEVMLACGKYNLVYE----FFRKVQKSYIPNALA 128
L+ ++L K +L+ E F ++ + P+
Sbjct: 584 GKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITT 643
Query: 129 YKVLVNTLWRE---GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMD 185
+V+ R KT+E ++ ++D G S Y L E++ +
Sbjct: 644 LNAMVSIYGRRRMVSKTNEILNFIKD---SGFTPSLTTYNSLMYMYSRTEHFEKSEDILR 700
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHG 244
+I KP ++S+ +I A +G ++ A+ IF +MK+F +P+++T N + +Y
Sbjct: 701 EIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDS 760
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
+F EA+ + + M ++ P+ T+N+++D R D+
Sbjct: 761 MFIEAIDVVKYMIKNGCK------------PNQNTYNSLIDWFCKLNRRDE 799
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 115/302 (38%), Gaps = 66/302 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ G++ +E +V+ M + P IV YN+++
Sbjct: 324 PDKVTYNALLDVYGKSRRPREAMEVLKEMEA---------------SGFAPSIVTYNSLI 368
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+A R + A + Q+ ++G KP TY ++ GK + + F +++ +
Sbjct: 369 SAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQ 428
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + L+ G E + E++
Sbjct: 429 PNICTFNALIKMHGNRGNFVEMMKVFEEI------------------------------- 457
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK--NFCSPNLVTCNIMVKAYL 241
KIC+ P +V++ L+ +G + +F +MK F P T N ++ AY
Sbjct: 458 --KICECV--PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV-PERDTFNTLISAYS 512
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G F++AM +++ M + V PD+ T+N +L A A W+ E V
Sbjct: 513 RCGFFDQAMAIYRRMLDAG------------VTPDLSTYNAVLAALARGGLWEQSEKVLA 560
Query: 302 RM 303
M
Sbjct: 561 EM 562
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/254 (18%), Positives = 105/254 (41%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y S+ + G ++D L + K G ++PD+ Y +L
Sbjct: 359 PSIVTYNSLISAYARDG-------LLDEAMELKSQMVKKG--------IKPDVFTYTTLL 403
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ + + + A V ++++ G +P+ T+ ++++ G + + + F +++ +
Sbjct: 404 SGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECV 463
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + L+ + G E ++M+R G V + L G ++A+
Sbjct: 464 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAI 523
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
++ P + +Y ++ A G + + + +MK+ C PN +T ++ AY
Sbjct: 524 YRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYAN 583
Query: 243 HGLFEEAMKLFQEM 256
E L +E+
Sbjct: 584 GKEVERMSALAEEI 597
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGL-FEEAMKLF 253
+ +YT LI A +G + A +F +++ C P L+T N+++ Y + G+ + + L
Sbjct: 220 IYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLV 279
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
M K V PD+YT+NT++ +C +++ V++ M G
Sbjct: 280 DSM------------KSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGF 322
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 1/132 (0%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D P + YN+++ R + +E + +L+++ +G KP ++ V+ G+
Sbjct: 669 DSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMK 728
Query: 110 LVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
F +++ P+ + Y + + + EA+ V+ M + G + Y L
Sbjct: 729 EASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLI 788
Query: 169 RCLCSAGKCEEA 180
C + +EA
Sbjct: 789 DWFCKLNRRDEA 800
>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Glycine max]
Length = 1476
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 133/312 (42%), Gaps = 43/312 (13%)
Query: 2 SSYPDTV----AYRSIAVTLGQAGHIKELFDVID---------SMRSLPKKKFKTGTLER 48
SS DTV A + G+ +KEL D++ S +L + K+G +E
Sbjct: 243 SSVGDTVQVYNAMMGVYARNGRFSKVKELLDLMRERGCVPDLVSFNTLINARMKSGAME- 301
Query: 49 WDPRL-------------EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY 95
P L PDI+ YN +++AC R E A V ++ +P TY
Sbjct: 302 --PNLALQLLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTY 359
Query: 96 GLVMEVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
++ V C + E F++++ K + P+A+ Y L+ REG T++ E+M +
Sbjct: 360 NAMISVYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVK 419
Query: 155 RGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQN 214
RG Y + G+ ++A+ + P V+YT LI + + ++
Sbjct: 420 RGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEE 479
Query: 215 AAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV 273
AA + ++M + P L T + ++ AY + G EEA + F M ++ +
Sbjct: 480 AANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAEETFNCM------------RRSGI 527
Query: 274 IPDIYTFNTMLD 285
PD ++ MLD
Sbjct: 528 KPDRLAYSVMLD 539
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 124/284 (43%), Gaps = 19/284 (6%)
Query: 29 VIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLK-QQG 87
+ D++ +L ++F G LE ++ P + + V ++ W+ A + + L +
Sbjct: 154 LTDTILALKSEEFVAGVLEERRVQMTPTDFCF---VVKWVGQQNWQRALELYECLNLRHW 210
Query: 88 QKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVS 147
P+A ++ V+ + L E F + + S Y ++ R G+ +
Sbjct: 211 YAPNARMVATILGVLGKANQEALAVEIFARAESSVGDTVQVYNAMMGVYARNGRFSKVKE 270
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEE--ALMQMDKICKVANKPLVVSYTGLIQA 205
++ M RG V + L +G E AL ++++ + +P +++Y LI A
Sbjct: 271 LLDLMRERGCVPDLVSFNTLINARMKSGAMEPNLALQLLNEVRRSGIRPDIITYNTLISA 330
Query: 206 CLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
C N++ A +F+ M++ C P+L T N M+ Y +A +LF+E+
Sbjct: 331 CSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAEELFKEL-------- 382
Query: 265 REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+ KG PD T+N++L A + E + + + + M+ G
Sbjct: 383 ---ESKGF-FPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGF 422
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/215 (18%), Positives = 93/215 (43%), Gaps = 2/215 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P + N +L A + ++ + V+Q+L+ G K S ++ L +E G V +
Sbjct: 842 PTVDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSILLTLEAFAQAGNLFEVQKI 901
Query: 115 FRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ ++ + Y P Y++++ L + + + + + +ME G + + +
Sbjct: 902 YNGMKAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGFQPDLQICNSILKLYLG 961
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
+ + KI + KP +Y LI + + N+M++ P L T
Sbjct: 962 IEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLEPKLDT 1021
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
++ A+ + ++E+A +LF+E+ + ++R +
Sbjct: 1022 YRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAF 1056
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/221 (18%), Positives = 94/221 (42%), Gaps = 16/221 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y ++ + + +E F +++ MRSL LEP + Y +++
Sbjct: 982 PDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLG---------------LEPKLDTYRSLI 1026
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
A +++ +E A + ++L+ G K Y L+M+ G + +++S I
Sbjct: 1027 TAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKESGIE 1086
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P +L+ + + G+ +EA + ++++ G+V Y + G + + +
Sbjct: 1087 PTISTMHLLMVSYGKSGQPEEAENVLKNLRTTGVVLDTLPYSSVIDAYLKKGDFKAGIEK 1146
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
+ ++ + +P +T I+A S A + N +++
Sbjct: 1147 LTEMKEAGIEPDHRIWTCFIRAATLSEGTNEAIVLLNALQD 1187
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + +LG+A ++E +V+ M D ++P + Y+A++
Sbjct: 459 PDAVTYTVLIDSLGKASKVEEAANVMSEM---------------LDAGVKPTLHTYSALI 503
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
A + + E A +++ G KP Y ++++ L + + + +++ +
Sbjct: 504 CAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMIREGFT 563
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDME 153
P+ Y+V+++ L RE D + DME
Sbjct: 564 PDNGLYEVMMHALVRENMWDVVDRIIRDME 593
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 74/175 (42%), Gaps = 1/175 (0%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D L+PD YN ++ R ++ E F ++ +++ G +P TY ++ Y
Sbjct: 977 DASLKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYE 1036
Query: 110 LVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
E F +++ + Y + Y +++ T G +A + + M+ GI + + + L
Sbjct: 1037 QAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKESGIEPTISTMHLLM 1096
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+G+ EEA + + + Y+ +I A L G+ + +MK
Sbjct: 1097 VSYGKSGQPEEAENVLKNLRTTGVVLDTLPYSSVIDAYLKKGDFKAGIEKLTEMK 1151
>gi|32488707|emb|CAE03450.1| OSJNBa0088H09.8 [Oryza sativa Japonica Group]
Length = 905
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 118/254 (46%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P A+R I AG +K D +D MR ++G + P ++ YNA++
Sbjct: 546 PSNRAFRPIIEGYAVAGDMKSALDTLDLMR-------RSGCV--------PTVMTYNALI 590
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ VR+ + + A VL ++ G P+ TY ++M A G +E+F K+++S +
Sbjct: 591 HGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLK 650
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ Y+ L+ + G+ A++ +M + I + +Y L G EA
Sbjct: 651 LDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDL 710
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
M ++ + P + +YT I AC +G++Q A + +M + PN+ T ++K +
Sbjct: 711 MKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWAR 770
Query: 243 HGLFEEAMKLFQEM 256
L + A+K F+EM
Sbjct: 771 VSLPDRALKCFEEM 784
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 124/274 (45%), Gaps = 14/274 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD +YN ++ A + + A +L++++++ +PS + ++E G
Sbjct: 509 LQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSAL 568
Query: 113 EFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +++S +P + Y L++ L R+ K AVS ++ M GI + Y + R
Sbjct: 569 DTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGY 628
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NL 230
++G +A KI + K V Y L++AC SG +Q+A + +M P N
Sbjct: 629 AASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNT 688
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
NI++ + G EA L ++M ED V P+I+T+ + ++AC
Sbjct: 689 FIYNILIDGWARRGDVWEAEDLMKQMKEDG------------VPPNIHTYTSYINACCKA 736
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASR 324
E V + M+ GL N K + +I +R
Sbjct: 737 GDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWAR 770
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/313 (20%), Positives = 127/313 (40%), Gaps = 49/313 (15%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK----- 107
++ I VY+++++ + V ++LK+ G KPS +YG ++ + + GK
Sbjct: 404 IDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKAL 463
Query: 108 -----------------YNLV-------------YEFFRKVQKSYI-PNALAYKVLVNTL 136
Y+++ + F ++ +S + P+ Y +L+
Sbjct: 464 SISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAF 523
Query: 137 WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV 196
+ G D A+ +E M++ + S + + AG + AL +D + + P V
Sbjct: 524 CKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTV 583
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
++Y LI + +Q A + ++M +PN T I+++ Y G +A + F +
Sbjct: 584 MTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTK 643
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
+ E GL + D+Y + T+L AC R V + M + N +
Sbjct: 644 IKES-----------GLKL-DVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIY 691
Query: 316 LRMILDASRAGKV 328
+I +R G V
Sbjct: 692 NILIDGWARRGDV 704
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/165 (18%), Positives = 67/165 (40%), Gaps = 1/165 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+ D+ +Y +L AC + + + A V +++ Q + Y ++++ G
Sbjct: 649 LKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAE 708
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +++++ +P N Y +N + G A +E+M G+ + Y L +
Sbjct: 709 DLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGW 768
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
+ AL +++ KP SY L+ + L + +
Sbjct: 769 ARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGS 813
>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
Length = 969
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 115/257 (44%), Gaps = 3/257 (1%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLE-RWDPRLEPDIVVYNAV 63
P+T+ Y ++ L +AG ++ +V M E + P++V Y A+
Sbjct: 558 PNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGAL 617
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE-FFRKVQKSY 122
++ + + A +L + G +P+ Y +++ GK + E FFR + Y
Sbjct: 618 IDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGY 677
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P Y L++ ++++ + D A+ + M + Y + LC G+C++AL
Sbjct: 678 LPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALK 737
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ + K P VV+YT LI SG + + +F QM C+PN VT +++
Sbjct: 738 LLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCC 797
Query: 242 EHGLFEEAMKLFQEMAE 258
GL +EA L EM +
Sbjct: 798 AAGLLDEAHSLLSEMKQ 814
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 81/363 (22%), Positives = 148/363 (40%), Gaps = 50/363 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLER---W 49
PDT Y + L +A +++ F + M+S L K G +E+ W
Sbjct: 453 PDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSW 512
Query: 50 DPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+E P +V Y A+L+A ++ KQ A + ++ G P+ TY +++ +
Sbjct: 513 FDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCK 572
Query: 105 CGKYNLVYEFFRKV-----------------QKSYIPNALAYKVLVNTLWREGKTDEAVS 147
G+ E + K+ S PN + Y L++ L + K +A
Sbjct: 573 AGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQE 632
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
++ M G + +Y L C GK + A ++ K P V +YT LI A
Sbjct: 633 LLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMF 692
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
+ A + +QM ++ C+PN+VT M+ G ++A+KL M
Sbjct: 693 KDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMM---------- 742
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+K+G P++ T+ +++D + D ++ +M+ G N + +I AG
Sbjct: 743 -EKRG-CNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAG 800
Query: 327 KVE 329
++
Sbjct: 801 LLD 803
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 115/231 (49%), Gaps = 8/231 (3%)
Query: 106 GKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
GK++ ++ + ++K ++P+ Y ++ L K ++A ++M+ G++ Y
Sbjct: 434 GKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTY 493
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
L C G E+A D++ V P VV+YT L+ A L + + A+ IF++M +
Sbjct: 494 TILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVD 553
Query: 225 F-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKG----LVIPDIYT 279
C+PN +T + +V + G ++A +++ +M S+++ ++ +G + P++ T
Sbjct: 554 AGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVT 613
Query: 280 FNTMLDA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ ++D C A K D EL+ M +G N + +I + GK++
Sbjct: 614 YGALIDGLCKAHKVVDAQELL-DVMSSNGCEPNHIIYDALIDGFCKVGKLD 663
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 110/244 (45%), Gaps = 38/244 (15%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V Y A+++ R + + A +L ++++G P+ TY +++ + GK ++ +
Sbjct: 714 PNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQL 773
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEA---------------------------- 145
F + + + PN + Y+VL+N G DEA
Sbjct: 774 FTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSK 833
Query: 146 -----VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS-- 198
+ +E++E G+V A +Y L AG+ E+AL ++ +V++ + S
Sbjct: 834 KFIASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKD 893
Query: 199 -YTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
YT LIQA + ++ A +++++ + P L ++K ++ + EA++L M
Sbjct: 894 TYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNKWNEALQLCYSM 953
Query: 257 AEDS 260
++
Sbjct: 954 CDEG 957
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/281 (18%), Positives = 117/281 (41%), Gaps = 20/281 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V Y +L +++KQ ++ + +G P+ + + ++ Y Y+
Sbjct: 307 PNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKL 366
Query: 115 FRKVQKSYIPNA-LAYKVLVNTLW--REGKTDEAVSAVEDMERRGIVGSAAL----YYDL 167
++ P + Y + + ++ E + + ++ E + + S L +
Sbjct: 367 LNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANF 426
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-C 226
ARCLC GK ++A + + + P +Y+ +I ++ ++ A +F +MK+
Sbjct: 427 ARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGV 486
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
P++ T I++ ++ + GL E+A F EM P + T+ +L A
Sbjct: 487 IPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCS------------PSVVTYTALLHA 534
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
K+ ++ RM+ G N + ++ +AG+
Sbjct: 535 YLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGE 575
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 5/199 (2%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N ++ C R W A L +LK G +PS TY +++V+ G+ ++ + +++ +
Sbjct: 176 NVIVRKCCRHGAWAKALEELGRLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSE 235
Query: 121 -SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ + L +EG+ +A+ + ER L + L A +E
Sbjct: 236 LGFCTDKFTVGCFAQALCKEGRWSDALVMI---EREDFKLDTVLCTQMISGLMEASLFDE 292
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVK 238
A+ + ++ + P VV+Y L+ L + I + M N C+PN N +V
Sbjct: 293 AISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVH 352
Query: 239 AYLEHGLFEEAMKLFQEMA 257
+Y + A KL MA
Sbjct: 353 SYCNARDYPYAYKLLNRMA 371
>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 882
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 125/261 (47%), Gaps = 15/261 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
LEPDIV+YN ++ + + A+ +LK QG KP +Y ++ V+ G+
Sbjct: 245 LEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAE 304
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F +++ + +P A AY ++ G+ ++A +E + RG + S + + CL
Sbjct: 305 ELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCL 364
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNL 230
K +EAL + ++ K +P +Y +I G ++ A I ++M++ PNL
Sbjct: 365 GKKRKVDEAL-SLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNL 423
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T NIMV + EEA K+F+ ++ + PD T+ +++D +
Sbjct: 424 LTVNIMVDRLCKARKLEEAYKIFESASQRGCN------------PDCVTYCSLIDGLGKK 471
Query: 291 KRWDDLELVYKRMLHHGLHFN 311
+ D+ ++++ML G + N
Sbjct: 472 GQVDEAYRLFEKMLDAGHNAN 492
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 135/315 (42%), Gaps = 23/315 (7%)
Query: 41 FKTGTLERWDPRLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSA 92
FK G +E+ E PD+ Y+ +++ + Q + +KQQG A
Sbjct: 539 FKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDA 598
Query: 93 TTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVED 151
Y V++ GK + YE ++++ + P Y +V+ L + + DEA E+
Sbjct: 599 RAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEE 658
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
+ +GI + LY L G+ +EA + ++++ K P V ++ L+ A + +
Sbjct: 659 AKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEE 718
Query: 212 IQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270
I A F MK C PN T +I++ + +A +Q+M K+
Sbjct: 719 INEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDM-----------QKQ 767
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK-VE 329
GLV P++ T+ TM+ A D +++R +G +A +I S A + +E
Sbjct: 768 GLV-PNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAME 826
Query: 330 LLEITWEHLARADRI 344
++ E R RI
Sbjct: 827 AYQVFEETRLRGCRI 841
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 143/327 (43%), Gaps = 34/327 (10%)
Query: 5 PDTVAYRSIAVTL---GQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
PD V+Y S+ L G+ G +ELF +++ RS+P YN
Sbjct: 282 PDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCA------------------YAYN 323
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
++ ++E A+ +L++L+++G PS ++ ++ + K + F ++K
Sbjct: 324 TMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKD 383
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
PN+ Y ++++ L G+ +EA +++ME + + + LC A K EEA
Sbjct: 384 AEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAY 443
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAY 240
+ + P V+Y LI G + A +F +M + + N V +++ +
Sbjct: 444 KIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNF 503
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
HG E+ K+F+E+ ++G PD+ NT +D + +++
Sbjct: 504 FIHGRKEDGHKIFKELI-----------RRG-CKPDLTLLNTYMDCVFKAGEVEKGRMIF 551
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGK 327
+ + +G + + + +I ++AG+
Sbjct: 552 EDIRSYGFLPDVRSYSILIHGLTKAGQ 578
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/344 (19%), Positives = 144/344 (41%), Gaps = 30/344 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P++ Y I L G ++E + ++D M L P+++ N ++
Sbjct: 386 PNSSTYNIIIDMLCLGGRVEEAYRILDEMEH---------------ASLFPNLLTVNIMV 430
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + ++ E A+ + + Q+G P TY +++ + G+ + Y F K + +
Sbjct: 431 DRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHN 490
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + Y L+ + G+ ++ +++ RRG L C+ AG+ E+ M
Sbjct: 491 ANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMI 550
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ I P V SY+ LI +G + + IF+ MK + + N +V + +
Sbjct: 551 FEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCK 610
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +A ++ +EM K+ V P + T+ ++D A R D+ ++++
Sbjct: 611 SGKVHKAYEILEEM------------KEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEE 658
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
G+ N + +I + G+++ + E + + +TP
Sbjct: 659 AKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKG-LTP 701
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 140/321 (43%), Gaps = 32/321 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +Y + L +AG +E ++ +M+ ++ F D YNAV+
Sbjct: 561 PDVRSYSILIHGLTKAGQARETSNIFHAMK---QQGFAL------------DARAYNAVV 605
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + + A+ +L+++K++ +P+ TYG +++ + + + Y F + + I
Sbjct: 606 DGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIE 665
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + Y L++ + G+ DEA +E+M ++G+ + + L L A + EAL+
Sbjct: 666 LNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVC 725
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF--NQMKNFCSPNLVTCNIMVKAYL 241
+ ++ P +Y+ LI L N A++F + K PN+VT M+
Sbjct: 726 FQSMKEMKCPPNTYTYSILING-LCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLA 784
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G +A LF+ + IPD +FN +++ + R + V++
Sbjct: 785 KVGNITDAYSLFERFKANGG------------IPDAASFNALIEGMSNANRAMEAYQVFE 832
Query: 302 RMLHHGLHFNAKRHLRMILDA 322
G N K + + LDA
Sbjct: 833 ETRLRGCRINIKSCISL-LDA 852
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 15/266 (5%)
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIP 124
A VR ++ + A + +++ +P+ + Y +++ + + E R++Q+ Y
Sbjct: 153 ALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEV 212
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ LV L REG+ +A++ V++++ + LY C AG + A
Sbjct: 213 GVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFF 272
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEH 243
++ KP VSYT +I +G + A +F QM+ S P N M+ Y
Sbjct: 273 HELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSA 332
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G FE+A KL + + E IP + +FN++L C +KR D L +
Sbjct: 333 GRFEDAYKLLERLRERG------------CIPSVVSFNSIL-TCLGKKRKVDEALSLFEV 379
Query: 304 LHHGLHFNAKRHLRMILDASRAGKVE 329
+ N+ + +I G+VE
Sbjct: 380 MKKDAEPNSSTYNIIIDMLCLGGRVE 405
>gi|255660990|gb|ACU25664.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 376
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 138/286 (48%), Gaps = 15/286 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + ++ PD VVYNA+LN R + + F + + + +G + S +++ ++M + G
Sbjct: 15 EIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNG 73
Query: 107 KYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K + V + ++KS ++ +++ Y +LV+ + G D+++ +E +++G V A Y
Sbjct: 74 KVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAQQKGGVLDAFAYS 133
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+ LC + A+ ++ + K KP Y LI + + ++A +F +M
Sbjct: 134 AMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTM 193
Query: 226 -CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
CSP ++T N ++ ++ +F EA L +E+ + KGL P + T++ ++
Sbjct: 194 HCSPTIITYNTLINGLCKNEMFGEAYNLVKELLD-----------KGLN-PGVITYSMLM 241
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ + + ++ ++ G + + H +I GK++L
Sbjct: 242 KGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQL 287
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 124/292 (42%), Gaps = 29/292 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D++ Y + + G+I + S+ L + K G L D Y+A++N
Sbjct: 93 DSITYGILVHGFCKNGYIDK------SLHVLEMAQQKGGVL---------DAFAYSAMIN 137
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ + A VL + + G KP+A Y ++ ++ K+ FR++ + P
Sbjct: 138 GLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSP 197
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ Y L+N L + EA + V+++ +G+ Y L + LC K E+AL
Sbjct: 198 TIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLW 257
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
+++ KP V + LI G +Q A ++ M + C+PNLV+ N +++ + +
Sbjct: 258 NQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKD 317
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
G A+ ++ + + + PDI ++N L + R D
Sbjct: 318 GDIRNALVIWARILRNG------------LEPDIISYNITLKGLCSCNRISD 357
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/137 (18%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D L P ++ Y+ ++ + E A + Q+ +G KP + +++ + + G
Sbjct: 224 ELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVG 283
Query: 107 KYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K L + + + PN +++ L+ +++G A+ + R G+ Y
Sbjct: 284 KMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343
Query: 166 DLARCLCSAGKCEEALM 182
+ LCS + +A++
Sbjct: 344 ITLKGLCSCNRISDAIL 360
>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 128/299 (42%), Gaps = 28/299 (9%)
Query: 55 PDIVVYNAVLNACVRRKQ-WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
P ++ YN +LN + W ++ +K G P TY ++ Y E
Sbjct: 253 PTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAE 312
Query: 114 FFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F +++ + + P+ + Y L++ + + EA+ +++ME G S Y L
Sbjct: 313 VFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYA 372
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLV 231
G +EA+ ++ K KP V +YT L+ +G A +F +M+ C PN+
Sbjct: 373 RDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNIC 432
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQE------------------------MAEDSNHINREY 267
T N ++K + G F E MK+F+E M + + + +E
Sbjct: 433 TFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 492
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+ G V P+ TFNT++ A + +D +Y+RML G+ + + ++ +R G
Sbjct: 493 KRAGFV-PERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGG 550
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 78/351 (22%), Positives = 140/351 (39%), Gaps = 75/351 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKK-FKT--------GTLER---- 48
PD V + ++ GQ G E+ V M+ +P++ F T G ++
Sbjct: 464 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAI 523
Query: 49 ----WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG-------- 96
D + PD+ YNAVL A R WE + VL ++K KP+ TY
Sbjct: 524 YRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYAN 583
Query: 97 ------------------------LVMEVMLACGKYNLVYE----FFRKVQKSYIPNALA 128
L+ ++L K +L+ E F ++ + P+
Sbjct: 584 GKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITT 643
Query: 129 YKVLVNTLWRE---GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMD 185
+V+ R KT+E ++ ++D G S Y L E++ +
Sbjct: 644 LNAMVSIYGRRRMVSKTNEILNFIKD---SGFTPSLTTYNSLMYMYSRTEHFEKSEDILR 700
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHG 244
+I KP ++S+ +I A +G ++ A+ IF +MK+F +P+++T N + +Y
Sbjct: 701 EIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDS 760
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
+F EA+ + + M K P+ T+N+++D R D+
Sbjct: 761 MFIEAIDVVKYMI------------KNECKPNQNTYNSLIDWFCKLNRRDE 799
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 115/302 (38%), Gaps = 66/302 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ G++ +E +V+ M + P IV YN+++
Sbjct: 324 PDKVTYNALLDVYGKSRRPREAMEVLKEMEA---------------SGFAPSIVTYNSLI 368
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+A R + A + Q+ ++G KP TY ++ GK + + F +++ +
Sbjct: 369 SAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQ 428
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + L+ G E + E++
Sbjct: 429 PNICTFNALIKMHGNRGNFVEMMKVFEEI------------------------------- 457
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK--NFCSPNLVTCNIMVKAYL 241
KIC+ P +V++ L+ +G + +F +MK F P T N ++ AY
Sbjct: 458 --KICECV--PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV-PERDTFNTLISAYS 512
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G F++AM +++ M + V PD+ T+N +L A A W+ E V
Sbjct: 513 RCGFFDQAMAIYRRMLDAG------------VTPDLSTYNAVLAALARGGLWEQSEKVLA 560
Query: 302 RM 303
M
Sbjct: 561 EM 562
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/254 (18%), Positives = 105/254 (41%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y S+ + G ++D L + K G ++PD+ Y +L
Sbjct: 359 PSIVTYNSLISAYARDG-------LLDEAMELKSQMVKKG--------IKPDVFTYTTLL 403
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ + + + A V ++++ G +P+ T+ ++++ G + + + F +++ +
Sbjct: 404 SGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECV 463
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + L+ + G E ++M+R G V + L G ++A+
Sbjct: 464 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAI 523
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
++ P + +Y ++ A G + + + +MK+ C PN +T ++ AY
Sbjct: 524 YRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYAN 583
Query: 243 HGLFEEAMKLFQEM 256
E L +E+
Sbjct: 584 GKEVERMSALAEEI 597
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGL-FEEAMKLF 253
+ +YT LI A +G + A +F +++ C P L+T N+++ Y + G+ + + L
Sbjct: 220 IYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLV 279
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
M K V PD+YT+NT++ +C +++ V++ M G
Sbjct: 280 DSM------------KSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGF 322
>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
Length = 1048
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 139/300 (46%), Gaps = 17/300 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ D+ + +++ R + A VL ++ + G +PS T+G ++ + +
Sbjct: 102 ISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAF 161
Query: 113 EF-FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
V+ Y PN + Y L++ L + G+ + A+ + +ME++G+ Y L L
Sbjct: 162 SLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGL 221
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C +G+ +A + + K + P VV++T LI + GN+ A ++ +M ++ PN
Sbjct: 222 CYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNN 281
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N ++ HG +A K F MA KG P++ T+NT++
Sbjct: 282 VTYNSIINGLCMHGRLYDAKKTFDLMAS-----------KG-CFPNVVTYNTLISGFCKF 329
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL-LEITWEHLARADRITPPAL 349
+ D+ +++RM G + + + +I + GK+ + L+I ++R R+TP +
Sbjct: 330 RMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSR--RVTPDII 387
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 117/287 (40%), Gaps = 36/287 (12%)
Query: 8 VAYRSIAVTLG-------QAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+ +R VTLG Q +E ++DSM P++V+Y
Sbjct: 668 LGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFG---------------FVPNVVIY 712
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N V+N + + A V ++++G + A TY ++ + G++ R + K
Sbjct: 713 NTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVK 772
Query: 121 SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
I PN + + L++T +EG EA + ++M RR +V + Y L C G +
Sbjct: 773 RKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGD 832
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVK 238
A D + P VV+Y LI S +++ +F +M + T N ++
Sbjct: 833 AKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIH 892
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
Y + G A K+F M + V PDI T+N +LD
Sbjct: 893 GYCQAGKLNVAQKVFNRMVDCG------------VSPDIVTYNILLD 927
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 114/260 (43%), Gaps = 14/260 (5%)
Query: 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREG 140
++ + G +PS T G ++ ++ + ++PN + Y ++N L +
Sbjct: 664 KMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNR 723
Query: 141 KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYT 200
+ A+ ME++GI A Y L L ++G+ +A + + K P V+ +T
Sbjct: 724 DLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFT 783
Query: 201 GLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
LI + GN+ A ++ +M + PN+ T N ++ + HG +A +F M
Sbjct: 784 ALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVS- 842
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
KG PD+ T+NT++ KR +D ++ M + GL +A + +I
Sbjct: 843 ----------KG-CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLI 891
Query: 320 LDASRAGKVELLEITWEHLA 339
+AGK+ + + + +
Sbjct: 892 HGYCQAGKLNVAQKVFNRMV 911
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/325 (21%), Positives = 133/325 (40%), Gaps = 31/325 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L + G + ++++ M K G L D+V YN +L
Sbjct: 174 PNVVVYNTLIDGLCKNGELNIALELLNEME-------KKG--------LGADVVTYNTLL 218
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+W A +L+ + ++ P T+ +++V + G + E +++ +Q S
Sbjct: 219 TGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVD 278
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y ++N L G+ +A + M +G + Y L C +E +
Sbjct: 279 PNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKL 338
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + +Y LI G ++ A IF M +P+++T I++
Sbjct: 339 FQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCV 398
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYK 301
+G E A+ F +M E +I I +N M+ C A+K EL +
Sbjct: 399 NGEIESALVKFDDMRESEKYIG------------IVAYNIMIHGLCKADKVEKAWEL-FC 445
Query: 302 RMLHHGLHFNAKRHLRMILDASRAG 326
R+ G+ +A+ + MIL + G
Sbjct: 446 RLPVEGVKPDARTYTIMILGLCKNG 470
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/346 (21%), Positives = 137/346 (39%), Gaps = 29/346 (8%)
Query: 8 VAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNAC 67
+ Y VT G H L + I SL K+G EP++VVYN +++
Sbjct: 135 LGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSG--------YEPNVVVYNTLIDGL 186
Query: 68 VRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNA 126
+ + A +L +++++G TY ++ + G+++ R + K I P+
Sbjct: 187 CKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDV 246
Query: 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK 186
+ + L++ ++G DEA ++M + + + Y + LC G+ +A D
Sbjct: 247 VTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDL 306
Query: 187 ICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHG 244
+ P VV+Y LI + +F +M + F + ++ T N ++ Y + G
Sbjct: 307 MASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGF-NADIFTYNTLIHGYCQVG 365
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
A+ +F M ++R V PDI T +L + + + M
Sbjct: 366 KLRVALDIFCWM------VSRR------VTPDIITHCILLHGLCVNGEIESALVKFDDMR 413
Query: 305 HHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR--ADRITPPA 348
+ + MI +A KVE WE R + + P A
Sbjct: 414 ESEKYIGIVAYNIMIHGLCKADKVEK---AWELFCRLPVEGVKPDA 456
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/309 (20%), Positives = 126/309 (40%), Gaps = 37/309 (11%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V Y ++ L +G D +R + K+K ++P+++ + A+++
Sbjct: 743 DAVTYNTLISGLSNSGRWT---DAARLLRDMVKRK------------IDPNVIFFTALID 787
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNLVYEFFRKVQK 120
V+ A + +++ ++ P+ TY G + L KY F V K
Sbjct: 788 TFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKY----MFDLMVSK 843
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
P+ + Y L+ + + ++ + +M +G+VG A Y L C AGK A
Sbjct: 844 GCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVA 903
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
+++ P +V+Y L+ ++G I+ A + + K+ +++T NI+++
Sbjct: 904 QKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQG 963
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+EA LF R +KG V PD + TM+ + + + +
Sbjct: 964 LCRTDKLKEAWCLF-----------RSLTRKG-VKPDAIAYITMISGLCRKGLQREADKL 1011
Query: 300 YKRMLHHGL 308
+RM G
Sbjct: 1012 CRRMKEDGF 1020
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 18/221 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y SI L G + + D M S K F P++V YN ++
Sbjct: 279 PNNVTYNSIINGLCMHGRLYDAKKTFDLMAS--KGCF-------------PNVVTYNTLI 323
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKSYI 123
+ + + + + Q++ +G TY ++ GK + + F V +
Sbjct: 324 SGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVT 383
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDM-ERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ + + +L++ L G+ + A+ +DM E +G A Y + LC A K E+A
Sbjct: 384 PDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVA-YNIMIHGLCKADKVEKAWE 442
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
++ KP +YT +I +G + A + +MK
Sbjct: 443 LFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMK 483
>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 822
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 135/308 (43%), Gaps = 31/308 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT++Y ++ +L + + D++ +M K+G P++V YN V+
Sbjct: 188 PDTISYSTVLKSLCEDSRSQRALDLLHTMVK------KSGG-------CSPNVVSYNTVI 234
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML---ACGKYNLVYEFFRKVQKS 121
+ R + A + ++ QQG P TY ++ + A K LV + +
Sbjct: 235 HGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLR--QMISNG 292
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+ P+ + Y +++ G+ E +M RRG++ LC GK +EA
Sbjct: 293 FEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAA 352
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAY 240
D + +KP +V+Y+ L+ G + + +FN M+ N + NI++ AY
Sbjct: 353 EFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAY 412
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ G+ +EAM +F +M E V+PD +T+ T++ A + R D +
Sbjct: 413 GKRGMMDEAMLIFTQMQERG------------VMPDAWTYGTVIAAFSRMGRLADAMDKF 460
Query: 301 KRMLHHGL 308
+M+ GL
Sbjct: 461 NQMIAMGL 468
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 117/282 (41%), Gaps = 26/282 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PDI N+ +++ + + + A + +G KP TY +++ A G +
Sbjct: 328 LMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDML 387
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F ++ + + Y +L++ + G DEA+ M+ RG++ A Y +
Sbjct: 388 NLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAF 447
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPN 229
G+ +A+ + +++ + KP + Y LIQ GN+ A + ++M + PN
Sbjct: 448 SRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPN 507
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAE-----DSNHINREYDKKGLVI---------- 274
V N ++ + + G EA +F + D N D GLV
Sbjct: 508 TVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLD 567
Query: 275 --------PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
PD+ T++ +LD R DD ++++ ML G+
Sbjct: 568 AMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGV 609
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 118/261 (45%), Gaps = 17/261 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVL-QQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
L+ D++V N +L K+ + A VL ++ + G +P +Y V++ + +
Sbjct: 150 LKTDVIVANILLKCLCHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRA 209
Query: 112 YEFFRKVQK---SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
+ + K PN ++Y +++ +REG+ +A + +M ++G+V Y
Sbjct: 210 LDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYI 269
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
LC A ++A + + ++ +P V+Y +I G + A +F +M +
Sbjct: 270 DALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLM 329
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P++ TCN + + +HG +EA + F MA + PD+ T++ +L
Sbjct: 330 PDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHK------------PDLVTYSVLLHGY 377
Query: 288 AAEKRWDDLELVYKRMLHHGL 308
AAE D+ ++ M +G+
Sbjct: 378 AAEGYVVDMLNLFNSMEGNGI 398
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 111/250 (44%), Gaps = 23/250 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + + S+ G G +++ F V+D+M S+ +EPD+V Y+A+L
Sbjct: 541 PDVITFNSLIDGYGLVGKMEKAFGVLDAMISVG---------------IEPDVVTYSALL 585
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML----ACGKYNLVYEFFRKVQK 120
+ R + + + +++ +G KP+ TYG+++ + G + +E ++
Sbjct: 586 DGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEM---IES 642
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ +++ L R DEA++ + + + + A+ + + K EEA
Sbjct: 643 GTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEA 702
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
D I P +Y +I L G+++ A +F+ M K+ C+P+ N +++
Sbjct: 703 NELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNNIIRV 762
Query: 240 YLEHGLFEEA 249
LE G +A
Sbjct: 763 LLEKGEISKA 772
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 79/386 (20%), Positives = 146/386 (37%), Gaps = 76/386 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + G++ ++ ++ +SM + D VYN ++
Sbjct: 365 PDLVTYSVLLHGYAAEGYVVDMLNLFNSMEG---------------NGIVADHSVYNILI 409
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEFFRKVQKSYI 123
+A +R + A + Q++++G P A TYG V+ G+ + + +F + +
Sbjct: 410 DAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLK 469
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD-LARCLCS--------- 173
P+ + Y L+ G +A + +M RGI ++++ + LC
Sbjct: 470 PDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQD 529
Query: 174 --------------------------AGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
GK E+A +D + V +P VV+Y+ L+
Sbjct: 530 IFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYC 589
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS------ 260
+G I + +F +M P +T I++ G A K+ EM E
Sbjct: 590 RNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDIS 649
Query: 261 -----------NHINRE----YDKKGL--VIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
N+ + E + K G V +I NTM+DA ++ ++ ++ +
Sbjct: 650 TCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSI 709
Query: 304 LHHGLHFNAKRHLRMILDASRAGKVE 329
GL NA + MI + + G VE
Sbjct: 710 SATGLVPNASTYGVMITNLLKEGSVE 735
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 107/254 (42%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+TV + SI +L + G + E D+ D + + ++ PD++ +N+++
Sbjct: 506 PNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGER---------------PDVITFNSLI 550
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + E AF VL + G +P TY +++ G+ + FR+ + K
Sbjct: 551 DGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVK 610
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y ++++ L+ +G+T A +M G + + LC +EA+
Sbjct: 611 PTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAL 670
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
K+ + K + +I A + A +F+ + PN T +M+ L+
Sbjct: 671 FKKLGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLK 730
Query: 243 HGLFEEAMKLFQEM 256
G EEA +F M
Sbjct: 731 EGSVEEADNMFSLM 744
>gi|218199303|gb|EEC81730.1| hypothetical protein OsI_25362 [Oryza sativa Indica Group]
Length = 583
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 134/311 (43%), Gaps = 31/311 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y ++ G AG+ K+ + L KK + G + PD+V +N VL
Sbjct: 79 PTRTTYNNVINACGAAGNWKKALE-------LCKKMTENG--------VGPDLVTHNIVL 123
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+A Q+ A + +K T +++ ++ G+ E F +++
Sbjct: 124 SALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTK 183
Query: 124 --PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
P+ + Y ++++ G+ + + + M G+ + Y L S G EAL
Sbjct: 184 CPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREAL 243
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
+ I K +P +VSYT L+ A S + A +FN+M KN C PN V+ N ++ AY
Sbjct: 244 AIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAY 303
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
G+ +EA+ L EM +D + PD+ + +T+L AC ++ +E +
Sbjct: 304 GSAGMLKEAVGLLHEMEKDG------------IQPDVVSISTLLAACGRCRQITRIETIL 351
Query: 301 KRMLHHGLHFN 311
+ G+ N
Sbjct: 352 EAARSRGIDLN 362
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 125/262 (47%), Gaps = 18/262 (6%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
++ W R +PD +YN++++A R QW A +++ + + P+ TTY V+ A
Sbjct: 37 MQEW--RCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNNVINACGAA 94
Query: 106 GKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G + E +K+ ++ + P+ + + ++++ L + +A+S E M+ +
Sbjct: 95 GNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMKGANVTSDTFTL 154
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANK--PLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+ CL G+C EA+ + + + K P VV+YT ++ + G ++N IF+ M
Sbjct: 155 NIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLM 214
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
PN+V N ++ AY G+ EA+ +F + KK + PDI ++
Sbjct: 215 VAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLI------------KKNGLRPDIVSYT 262
Query: 282 TMLDACAAEKRWDDLELVYKRM 303
++L+A + + V+ +M
Sbjct: 263 SLLNAYGRSAQPEKAREVFNKM 284
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 122/296 (41%), Gaps = 40/296 (13%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S P+ V+Y ++ G AG +KE ++ M K G ++PD+V +
Sbjct: 288 SCKPNKVSYNALIDAYGSAGMLKEAVGLLHEME-------KDG--------IQPDVVSIS 332
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
+L AC R +Q +L+ + +G + Y ++ L+ G Y E + +++S
Sbjct: 333 TLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRES 392
Query: 122 YI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ P+A+ Y +L++ + GK E++ EDM + + + + S G +
Sbjct: 393 NVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEFLWTIRWLEESLGPVQRD 452
Query: 181 LMQMDKICKVANK-------PLVVSYTGLIQACLD----SGNIQNAAYIFNQMKNFCSP- 228
+ + K A++ L G + L+ G +N +F +M CS
Sbjct: 453 GSKWIRDWKTASEMIEYLDSSLSSISVGTLNHVLNFLGKCGKTENMMKLFYKMVTSCSTV 512
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
L T ++++ L G + + +++ Q M + H P +Y F +L
Sbjct: 513 GLSTYAVVLRNLLVVGKWRKYIEVLQWMEDSGVH------------PTLYMFQNVL 556
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 121/283 (42%), Gaps = 30/283 (10%)
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
FF + P+A Y L++ R G+ A++ +EDM R I + Y ++ +
Sbjct: 34 FFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNNVINACGA 93
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
AG ++AL K+ + P +V++ ++ A + A F MK + + T
Sbjct: 94 AGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMKGANVTSDTFT 153
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
NI++ ++ G EA++LF M E ++ PD+ T+ +++ + +
Sbjct: 154 LNIIIHCLVKIGQCGEAIELFNSMRE----------RRTKCPPDVVTYTSIMHSYCIYGQ 203
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMI-LDASRAGKVELLEITWEHLARADRITPPALIK 351
++ + ++ M+ G+ N + ++ ASR E L I +L + + + P
Sbjct: 204 VENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIF--NLIKKNGLRP----- 256
Query: 352 ERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENS 394
D S S L ++ S PE +R + K K+NS
Sbjct: 257 ----------DIVSYTSLLNAYGRSAQPEKAREVFNK-MKKNS 288
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 13/169 (7%)
Query: 117 KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
K Q +Y Y +++ R + D+A +M+ A +Y L AG+
Sbjct: 2 KNQDNYCARNDIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQ 61
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNI 235
A+ M+ + + A P +Y +I AC +GN + A + +M +N P+LVT NI
Sbjct: 62 WRWAINIMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNI 121
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
++ A + +A+ F+ M K V D +T N ++
Sbjct: 122 VLSALKNGAQYSKAISYFEIM------------KGANVTSDTFTLNIII 158
>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
Length = 900
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 118/254 (46%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P A+R I AG +K D +D MR ++G + P ++ YNA++
Sbjct: 541 PSNRAFRPIIEGYAVAGDMKSALDTLDLMR-------RSGCV--------PTVMTYNALI 585
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ VR+ + + A VL ++ G P+ TY ++M A G +E+F K+++S +
Sbjct: 586 HGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLK 645
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ Y+ L+ + G+ A++ +M + I + +Y L G EA
Sbjct: 646 LDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDL 705
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
M ++ + P + +YT I AC +G++Q A + +M + PN+ T ++K +
Sbjct: 706 MKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWAR 765
Query: 243 HGLFEEAMKLFQEM 256
L + A+K F+EM
Sbjct: 766 VSLPDRALKCFEEM 779
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 124/274 (45%), Gaps = 14/274 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD +YN ++ A + + A +L++++++ +PS + ++E G
Sbjct: 504 LQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSAL 563
Query: 113 EFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +++S +P + Y L++ L R+ K AVS ++ M GI + Y + R
Sbjct: 564 DTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGY 623
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NL 230
++G +A KI + K V Y L++AC SG +Q+A + +M P N
Sbjct: 624 AASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNT 683
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
NI++ + G EA L ++M ED V P+I+T+ + ++AC
Sbjct: 684 FIYNILIDGWARRGDVWEAEDLMKQMKEDG------------VPPNIHTYTSYINACCKA 731
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASR 324
E V + M+ GL N K + +I +R
Sbjct: 732 GDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWAR 765
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 64/313 (20%), Positives = 127/313 (40%), Gaps = 49/313 (15%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK----- 107
++ I VY+++++ + V ++LK+ G KPS +YG ++ + + GK
Sbjct: 399 IDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKAL 458
Query: 108 -----------------YNLV-------------YEFFRKVQKSYI-PNALAYKVLVNTL 136
Y+++ + F ++ +S + P+ Y +L+
Sbjct: 459 SISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAF 518
Query: 137 WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV 196
+ G D A+ +E M++ + S + + AG + AL +D + + P V
Sbjct: 519 CKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTV 578
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
++Y LI + +Q A + ++M +PN T I+++ Y G +A + F +
Sbjct: 579 MTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTK 638
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
+ E GL + D+Y + T+L AC R V + M + N +
Sbjct: 639 IKES-----------GLKL-DVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIY 686
Query: 316 LRMILDASRAGKV 328
+I +R G V
Sbjct: 687 NILIDGWARRGDV 699
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 4/154 (2%)
Query: 108 YNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ V F ++ K P+ + +++ + G A + E+M RGI +A ++ L
Sbjct: 248 WQAVVSAFERIPK---PSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSL 304
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FC 226
A AL ++++ + +V+Y+ LI + Q+A +F + K
Sbjct: 305 VHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLS 364
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
S N + + ++ A+ + G E A +L EM ED
Sbjct: 365 SLNGIIYSNIIHAHCQSGNMERAEELVCEMEEDG 398
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/165 (18%), Positives = 67/165 (40%), Gaps = 1/165 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+ D+ +Y +L AC + + + A V +++ Q + Y ++++ G
Sbjct: 644 LKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAE 703
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +++++ +P N Y +N + G A +E+M G+ + Y L +
Sbjct: 704 DLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGW 763
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
+ AL +++ KP SY L+ + L + +
Sbjct: 764 ARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGS 808
>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
Length = 491
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 120/247 (48%), Gaps = 14/247 (5%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
+ D V YN ++N K+ A +L+++ ++G P+ T+Y +++ G+ N
Sbjct: 200 KFRADCVSYNVMVNGWCLIKRTNKALEMLKEMVKRGLTPNLTSYNTMLKGYFRAGQINEA 259
Query: 112 YEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
++FF +++K + + Y +++ G+ A + M ++G++ S A Y +
Sbjct: 260 WDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFIQV 319
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
LC + A++ +++ P ++Y +I+ G ++ A +MK + C PN
Sbjct: 320 LCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPN 379
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+ T N++++ + + G ++A+ LFQ+M G +P++ T+N ++ A
Sbjct: 380 VQTYNLVIRYFCDEGEIDKALDLFQKMTS------------GDCLPNLDTYNILISAMFV 427
Query: 290 EKRWDDL 296
K+ DDL
Sbjct: 428 RKKSDDL 434
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 106/239 (44%), Gaps = 17/239 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P++ YN +L R Q A+ ++K++ + TY V+ G+
Sbjct: 236 LTPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKRAR 295
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F V+K +P+ Y + L ++ D A+ E+M +G V ++ Y + R L
Sbjct: 296 KVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRGL 355
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C G+ E A+ M ++ +P V +Y +I+ D G I A +F +M + C PNL
Sbjct: 356 CHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGEIDKALDLFQKMTSGDCLPNL 415
Query: 231 VTCNIMVKAYLEHGLFEE---AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
T NI++ A ++ A L EM + +G V P +TFN +L+
Sbjct: 416 DTYNILISAMFVRKKSDDLLVAGNLLIEMVD-----------RGFV-PRKFTFNRVLNG 462
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/255 (18%), Positives = 101/255 (39%), Gaps = 48/255 (18%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNT 135
A V + Q G ++ +++V+ + + Y F+ + + + ++Y V+VN
Sbjct: 155 AVKVFLSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNLFKVFKGKFRADCVSYNVMVNG 214
Query: 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL 195
+T++A+ +++M +RG+ P
Sbjct: 215 WCLIKRTNKALEMLKEMVKRGLT-----------------------------------PN 239
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
+ SY +++ +G I A F +MK C +++T ++ + G + A K+F
Sbjct: 240 LTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKRARKVFD 299
Query: 255 EMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKR 314
M KKG V+P + T+N + + D+ ++++ M+ G N+
Sbjct: 300 TMV-----------KKG-VLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSIT 347
Query: 315 HLRMILDASRAGKVE 329
+ +I G++E
Sbjct: 348 YNLVIRGLCHRGEME 362
>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
Length = 688
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 138/309 (44%), Gaps = 29/309 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD ++Y ++ L +G+ V KK + G +P++V YN ++
Sbjct: 196 PDVISYNTLINGLCNSGNTNMAVHVF-------KKMEQNGC--------KPNVVTYNTII 240
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
++ + + A L ++ +G P A TY ++ + G+ N F+++ Q
Sbjct: 241 DSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCK 300
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y +++++L+++ ++A + +M +GI Y + LC G+ EA+
Sbjct: 301 PDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRL 360
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
K+ + KP VV+Y +I + + +A ++M + PN VT + ++ +
Sbjct: 361 FKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCN 420
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +EA +LF+EM + V+P+ TF+ ++D E + V++
Sbjct: 421 LGQLDEATQLFKEMVGRN------------VMPNTLTFSILVDGLCQEGMVSEARWVFET 468
Query: 303 MLHHGLHFN 311
M G+ N
Sbjct: 469 MTEKGVEPN 477
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 133/304 (43%), Gaps = 35/304 (11%)
Query: 5 PDTVAYRSIA---VTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
PD + Y SI LGQ LF K+ + G +PD+V YN
Sbjct: 266 PDAITYNSIVHGLCCLGQLNEATRLF----------KRMEQNGC--------KPDVVTYN 307
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QK 120
++++ + + A L ++ QG P TY ++ + G+ N F+K+ QK
Sbjct: 308 IIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQK 367
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
P+ +AY ++++L ++ ++A+ + +M RGI +A Y + C+ G+ +EA
Sbjct: 368 GCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEA 427
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
++ P ++++ L+ G + A ++F M + PN+ T N ++
Sbjct: 428 TQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNG 487
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
Y EA K+F+ M KG PD++++N +++ +R D + +
Sbjct: 488 YCLRCKMNEARKVFEIMV-----------GKGCA-PDLHSYNILINGYCNSRRMDKAKAL 535
Query: 300 YKRM 303
+M
Sbjct: 536 LTQM 539
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 132/285 (46%), Gaps = 22/285 (7%)
Query: 30 IDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK 89
+D S+ K FK G ++PD++ + ++N + + A + ++ + G +
Sbjct: 144 VDFAVSVWGKMFKLG--------IQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHE 195
Query: 90 PSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSA 148
P +Y ++ + G N+ F+K+ Q PN + Y ++++L ++ ++A+
Sbjct: 196 PDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDF 255
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+ +M RGI A Y + LC G+ EA ++ + KP VV+Y +I +
Sbjct: 256 LSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYK 315
Query: 209 SGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
+ +AA ++M + P++VT ++ G EA++LF++M
Sbjct: 316 DRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKM----------- 364
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
++KG PD+ +NT++D+ ++ +D M+ G+ NA
Sbjct: 365 EQKG-CKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNA 408
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 109/263 (41%), Gaps = 49/263 (18%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
+ R +PR P IV + L + + KQ+ ++ Q+ G + T Y L
Sbjct: 84 MARMNPR--PSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGV--THTVYSL-------- 131
Query: 106 GKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+L+N L R D AVS M + GI +
Sbjct: 132 ------------------------NILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFT 167
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KN 224
L +C+ GK + A+ +++ + ++P V+SY LI +SGN A ++F +M +N
Sbjct: 168 TLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQN 227
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
C PN+VT N ++ + + L +AM EM + PD T+N+++
Sbjct: 228 GCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRG------------IPPDAITYNSIV 275
Query: 285 DACAAEKRWDDLELVYKRMLHHG 307
+ ++ ++KRM +G
Sbjct: 276 HGLCCLGQLNEATRLFKRMEQNG 298
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/328 (19%), Positives = 133/328 (40%), Gaps = 36/328 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL---------------- 46
PD VAY +I +L + + + + + M R +P T+
Sbjct: 371 PDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQL 430
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E + P+ + ++ +++ + A WV + + ++G +P+ TY +M
Sbjct: 431 FKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCL 490
Query: 105 CGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
K N + F V K P+ +Y +L+N + D+A + + M + + +
Sbjct: 491 RCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVT 550
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + + LC G+ +A K+C P +++Y+ L+ G++ A +F MK
Sbjct: 551 YNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMK 610
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
P+++ I+++ G E A LF +++ D + P T+N
Sbjct: 611 EKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADG------------IQPPGRTYNV 658
Query: 283 MLDACAAEKRWDDLELVYK--RMLHHGL 308
M+ E D+ +++ +M+ H +
Sbjct: 659 MIKGLLKEGLSDEAYELFRKWKMMKHNV 686
>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
Length = 677
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 134/311 (43%), Gaps = 31/311 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y ++ G AG+ K+ + L KK + G + PD+V +N VL
Sbjct: 79 PTRTTYNNVINACGAAGNWKKALE-------LCKKMTENG--------VGPDLVTHNIVL 123
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+A Q+ A + +K T +++ ++ G+ E F +++
Sbjct: 124 SALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTK 183
Query: 124 --PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
P+ + Y ++++ G+ + + + M G+ + Y L S G EAL
Sbjct: 184 CPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREAL 243
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
+ I K +P +VSYT L+ A S + A +FN+M KN C PN V+ N ++ AY
Sbjct: 244 AIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAY 303
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
G+ +EA+ L EM +D + PD+ + +T+L AC ++ +E +
Sbjct: 304 GSAGMLKEAVGLLHEMEKDG------------IQPDVVSISTLLAACGRCRQITRIETIL 351
Query: 301 KRMLHHGLHFN 311
+ G+ N
Sbjct: 352 EAARSRGIDLN 362
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 139/305 (45%), Gaps = 19/305 (6%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
++ W R +PD +YN++++A R QW A +++ + + P+ TTY V+ A
Sbjct: 37 MQEW--RCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNNVINACGAA 94
Query: 106 GKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G + E +K+ ++ + P+ + + ++++ L + +A+S E M+ +
Sbjct: 95 GNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMKGANVTSDTFTL 154
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANK--PLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+ CL G+C EA+ + + + K P VV+YT ++ + G ++N IF+ M
Sbjct: 155 NIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLM 214
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
PN+V N ++ AY G+ EA+ +F + KK + PDI ++
Sbjct: 215 VAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLI------------KKNGLRPDIVSYT 262
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
++L+A + + V+ +M + N K ++DA + + + H
Sbjct: 263 SLLNAYGRSAQPEKAREVFNKMKKNSCKPN-KVSYNALIDAYGSAGMLKEAVGLLHEMEK 321
Query: 342 DRITP 346
D I P
Sbjct: 322 DGIQP 326
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 126/267 (47%), Gaps = 17/267 (6%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S P+ V+Y ++ G AG +KE ++ M K G ++PD+V +
Sbjct: 288 SCKPNKVSYNALIDAYGSAGMLKEAVGLLHEME-------KDG--------IQPDVVSIS 332
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
+L AC R +Q +L+ + +G + Y ++ L+ G Y E + +++S
Sbjct: 333 TLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRES 392
Query: 122 YI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ P+A+ Y +L++ + GK E++ EDM + + +Y L GK EA
Sbjct: 393 NVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEVYSSLIYSYIKQGKLSEA 452
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKA 239
+ K P V++YT LIQA G + A +F +M+ N P+ + C+ +++A
Sbjct: 453 ESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEA 512
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINRE 266
+ + G E ++L + M + S +N++
Sbjct: 513 FNKGGEPERVLQLMEFMKKKSIPLNQK 539
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 121/283 (42%), Gaps = 30/283 (10%)
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
FF + P+A Y L++ R G+ A++ +EDM R I + Y ++ +
Sbjct: 34 FFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNNVINACGA 93
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
AG ++AL K+ + P +V++ ++ A + A F MK + + T
Sbjct: 94 AGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMKGANVTSDTFT 153
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
NI++ ++ G EA++LF M E ++ PD+ T+ +++ + +
Sbjct: 154 LNIIIHCLVKIGQCGEAIELFNSMRE----------RRTKCPPDVVTYTSIMHSYCIYGQ 203
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMI-LDASRAGKVELLEITWEHLARADRITPPALIK 351
++ + ++ M+ G+ N + ++ ASR E L I +L + + + P
Sbjct: 204 VENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIF--NLIKKNGLRP----- 256
Query: 352 ERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENS 394
D S S L ++ S PE +R + K K+NS
Sbjct: 257 ----------DIVSYTSLLNAYGRSAQPEKAREVFNK-MKKNS 288
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 13/169 (7%)
Query: 117 KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
K Q +Y Y +++ R + D+A +M+ A +Y L AG+
Sbjct: 2 KNQDNYCARNDIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQ 61
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNI 235
A+ M+ + + A P +Y +I AC +GN + A + +M +N P+LVT NI
Sbjct: 62 WRWAINIMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNI 121
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
++ A + +A+ F+ M K V D +T N ++
Sbjct: 122 VLSALKNGAQYSKAISYFEIM------------KGANVTSDTFTLNIII 158
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 100/253 (39%), Gaps = 17/253 (6%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+TVAY S + G ++ ++ SMR + ++PD V YN +++
Sbjct: 362 NTVAYNSGIKSYLSFGDYEKALELYTSMR---------------ESNVKPDAVTYNILIS 406
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-IP 124
+ ++ + + + + Y ++ + GK + F ++KS P
Sbjct: 407 GSSKLGKYTESLRFFEDMVDSKVSSTKEVYSSLIYSYIKQGKLSEAESTFSSMKKSGCFP 466
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ L Y L+ G A ++ME GI A + L G+ E L M
Sbjct: 467 DVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLM 526
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
+ + K + SY +I +C + + A+ + + + S ++ T N ++ +
Sbjct: 527 EFMKKKSIPLNQKSYFEIIASCTMIRDWKTASEMIEYLDSSLSSISVGTLNHVLNFLGKC 586
Query: 244 GLFEEAMKLFQEM 256
G E MKLF +M
Sbjct: 587 GKTENMMKLFYKM 599
>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
Length = 382
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 146/344 (42%), Gaps = 44/344 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKK---FKTGTL-------ERWDPR-- 52
PD V+Y ++ L + G + FD+ M + + F L +R D
Sbjct: 44 PDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARA 103
Query: 53 ---------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
PD+V YN ++ A + + + A Q+ ++G P+ ++ ++ +
Sbjct: 104 VIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLC 163
Query: 104 ACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+ E F + + + + PN + Y V+++ L + + DEA ++ M G
Sbjct: 164 RARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLV 223
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y L +AG+ + AL + ++ P VV+YT +I G + +A IF ++
Sbjct: 224 AYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFREL 283
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
N CSPN+VT + ++ Y +E K+ +EMA P++ T+N
Sbjct: 284 VANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMA---------------CRPNVVTYN 328
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNA------KRHLRMI 319
TM+ + R ++ +++ M G +A KR LRMI
Sbjct: 329 TMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRALRMI 372
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 129/292 (44%), Gaps = 20/292 (6%)
Query: 46 LERWDPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVM 99
LE +D LE PD+V Y ++N + + + AF + +++ G +P+A TY ++
Sbjct: 30 LEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALV 89
Query: 100 EVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ + + + + +K + P+ + Y L+ L++ G+ DEA++ M G V
Sbjct: 90 DGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYV 149
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
+ + + LC A + +AL +++ P +V+Y+ +I S + A +
Sbjct: 150 PTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQL 209
Query: 219 FNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI 277
++M C P+LV +V + G + A+ L + M IPD+
Sbjct: 210 LDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQG------------CIPDV 257
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
T+ ++D R DD +++ ++ + N + +I RA +V+
Sbjct: 258 VTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVD 309
>gi|297853270|ref|XP_002894516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297340358|gb|EFH70775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 477
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 116/257 (45%), Gaps = 18/257 (7%)
Query: 3 SYPDTV-AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
YP T + + T G+AG +++ + ++ + +K YN
Sbjct: 182 GYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHS---------------YN 226
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQK 120
A+L++ + KQ++ WV +Q+ + G P TY +VM GK + +Y + V+
Sbjct: 227 AILHSLLGVKQYKLIDWVYEQMLEDGFSPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKD 286
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ P+ Y +L++ L K A++ + M G+ + L L AGK E
Sbjct: 287 GFSPDLYTYNILLHHLATGNKPLAALNLLTHMREVGVEPGVIHFTTLVDGLSRAGKLEAC 346
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKA 239
MD++ KV P VV YT +I + G ++ A +F +M PN+ T N M++
Sbjct: 347 KYFMDEMVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRG 406
Query: 240 YLEHGLFEEAMKLFQEM 256
+ G F+EA L +EM
Sbjct: 407 FCMAGKFKEACSLLKEM 423
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 126/269 (46%), Gaps = 19/269 (7%)
Query: 89 KPSATTYGLVMEVMLACGKYNL---VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEA 145
+P +Y ++ +L +Y L VYE + ++ + P+ L Y +++ +R GKTD
Sbjct: 219 RPYKHSYNAILHSLLGVKQYKLIDWVYE--QMLEDGFSPDVLTYNIVMFANFRLGKTDRL 276
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+++M + G Y L L + K AL + + +V +P V+ +T L+
Sbjct: 277 YRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLTHMREVGVEPGVIHFTTLVDG 336
Query: 206 CLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
+G ++ Y ++M K C+P++V +M+ Y+ G E+A ++F+EM E
Sbjct: 337 LSRAGKLEACKYFMDEMVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQ--- 393
Query: 265 REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASR 324
+P+++T+N+M+ ++ + + K M G + N + ++ +
Sbjct: 394 ---------LPNVFTYNSMIRGFCMAGKFKEACSLLKEMESRGCNPNFVVYSTLVNNLRN 444
Query: 325 AGKV-ELLEITWEHLARADRITPPALIKE 352
AGKV E EI + + + + ++ K+
Sbjct: 445 AGKVLEAHEIVKDMVEKGHYVHLISMFKK 473
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+EP ++ + +++ R + E + + ++ + G P Y +++ ++ G+
Sbjct: 323 VEPGVIHFTTLVDGLSRAGKLEACKYFMDEMVKVGCTPDVVCYTVMITGYISGGELEKAE 382
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F+++ +K +PN Y ++ GK EA S +++ME RG + +Y L L
Sbjct: 383 EMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACSLLKEMESRGCNPNFVVYSTLVNNL 442
Query: 172 CSAGKCEEA 180
+AGK EA
Sbjct: 443 RNAGKVLEA 451
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 16/153 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P + + ++ L +AG ++ +D M K G PD+V Y ++
Sbjct: 325 PGVIHFTTLVDGLSRAGKLEACKYFMDEM-------VKVGC--------TPDVVCYTVMI 369
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ + E A + +++ ++GQ P+ TY ++ GK+ ++++ +
Sbjct: 370 TGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACSLLKEMESRGCN 429
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
PN + Y LVN L GK EA V+DM +G
Sbjct: 430 PNFVVYSTLVNNLRNAGKVLEAHEIVKDMVEKG 462
>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Brachypodium distachyon]
Length = 1102
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 142/316 (44%), Gaps = 29/316 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y I +G++ I+++ V M K + E V YN ++
Sbjct: 809 PDEFTYNLILDAMGKSMRIEDMLKVQKEMHC---KGY------------ESTYVTYNTII 853
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ V+ K A + +L +G P+ TYG +++ +L GK + F + +
Sbjct: 854 SGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCK 913
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y +L+N G T++ ++M +GI Y L LC+AG+ ++L
Sbjct: 914 PNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSY 973
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ ++ +P +++Y LI SG ++ A +FN M K+ +PNL T N ++ +
Sbjct: 974 FRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGK 1033
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G EA K+++E+ ++ P+++T+N ++ + D+ Y +
Sbjct: 1034 EGKAAEAGKMYEELLKNGWK------------PNVFTYNALIGGYSVSGSTDNAFASYGQ 1081
Query: 303 MLHHGLHFNAKRHLRM 318
M+ G N+ ++++
Sbjct: 1082 MIVGGCPPNSSTYMQL 1097
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 129/281 (45%), Gaps = 20/281 (7%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD YN +L+A + + E V +++ +G + + TY ++ ++ K ++YE
Sbjct: 808 DPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLV---KSKMLYE 864
Query: 114 ----FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
+++ + + + P Y L++ L ++GK ++A ++M G + A+Y L
Sbjct: 865 AMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLN 924
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSP 228
AG E+ + P + SYT LI A +G + ++ F Q+ P
Sbjct: 925 GYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEP 984
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
+L+T N+++ G EEA+ LF +M +K + P++YT+N+++
Sbjct: 985 DLITYNLLIHGLGRSGRLEEAVSLFNDM------------EKSGIAPNLYTYNSLILYLG 1032
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
E + + +Y+ +L +G N + +I S +G +
Sbjct: 1033 KEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSGSTD 1073
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 135/306 (44%), Gaps = 39/306 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ G G + + ++ ++M++ ++V Y AV+
Sbjct: 319 PDRVTYITLLDKCGDNGDSRSVIEIWNAMKA---------------DGYNDNVVAYTAVV 363
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+A + + + A V Q+KQ+G +P +Y ++ L + N E F +
Sbjct: 364 DALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPT 423
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV-----GSAALYYDLARCLCSAGKCE 178
PN Y + +N + G++ +A+ E M+ +GIV G+A LY L +G+
Sbjct: 424 PNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLY-----SLAKSGRLG 478
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMV 237
A ++ + P ++YT +I+ C + N A +F++M + C P+++ N ++
Sbjct: 479 MAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLI 538
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ G EA K+F E+ E +N + P T+NT+L E + ++
Sbjct: 539 DTLYKAGRGNEAWKIFHELKE----MNLD--------PTDCTYNTLLAGLGREGKVKEVM 586
Query: 298 LVYKRM 303
+ + M
Sbjct: 587 HLLEEM 592
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 129/292 (44%), Gaps = 20/292 (6%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL--VYEFFR 116
YN ++ V+ A V + + G PS TY ++M LA GK ++ V R
Sbjct: 184 TYNGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLM---LAFGKRDVETVVWLLR 240
Query: 117 KVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
+++ + PN +Y + + L + G+ +EA ++ ME G L + LC AG
Sbjct: 241 EMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAG 300
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCN 234
+ +A K+ KP V+Y L+ C D+G+ ++ I+N MK + + N+V
Sbjct: 301 RVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYT 360
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
+V A + G +EA +F +M + KG + P Y++N+++ R +
Sbjct: 361 AVVDALCQVGRVDEASDVFDQMKQ-----------KG-IEPQQYSYNSLISGFLKADRLN 408
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
++ M HG N ++ I ++G+ L I L ++ I P
Sbjct: 409 HALELFNHMNIHGPTPNGYTYVLFINYYGKSGE-SLKAIKRYELMKSKGIVP 459
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/252 (20%), Positives = 106/252 (42%), Gaps = 16/252 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD VA ++ +L ++G + V ++S+ + PD + Y ++
Sbjct: 459 PDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIG---------------VCPDNITYTMMI 503
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
C + + A V ++ + P +++ + G+ N ++ F ++++ +
Sbjct: 504 KCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLD 563
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P Y L+ L REGK E + +E+M + Y + CLC G+ AL
Sbjct: 564 PTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGEVNYALGM 623
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
+ + P + SY + + + A IF QMK +P+ T ++ +++++
Sbjct: 624 LYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQMKKVLAPDYTTLCTILPSFVKN 683
Query: 244 GLFEEAMKLFQE 255
GL EA+ +E
Sbjct: 684 GLMNEALHTLKE 695
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 126/285 (44%), Gaps = 14/285 (4%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D ++P++ Y + + ++E A+ +LQ+++ +G KP T ++++++ G
Sbjct: 241 EMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAG 300
Query: 107 KYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ + + F K++ S P+ + Y L++ G + + M+ G + Y
Sbjct: 301 RVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYT 360
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-N 224
+ LC G+ +EA D++ + +P SY LI L + + +A +FN M +
Sbjct: 361 AVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIH 420
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
+PN T + + Y + G +A+K ++ M K ++PD+ N +L
Sbjct: 421 GPTPNGYTYVLFINYYGKSGESLKAIKRYELM------------KSKGIVPDVVAGNAVL 468
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ A R + V+ + G+ + + MI S+A +
Sbjct: 469 YSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNAD 513
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/386 (19%), Positives = 149/386 (38%), Gaps = 77/386 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y ++ LG+ G +KE+ +++ M S P+++ YN VL
Sbjct: 564 PTDCTYNTLLAGLGREGKVKEVMHLLEEMNS---------------NSYPPNLITYNTVL 608
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + + A +L + +G P ++Y + ++ + + F +++K P
Sbjct: 609 DCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQMKKVLAP 668
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVED---------------------MERRGIVGSAAL 163
+ ++ + + G +EA+ +++ ++R G+ S
Sbjct: 669 DYTTLCTILPSFVKNGLMNEALHTLKEYILQPGSKADRSSFHSLMEGILKRAGMEKSIEF 728
Query: 164 YYDLA---------------RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
++A R LC + K EA + K + SY LI +D
Sbjct: 729 AENIALSRILLDDFFLSPLIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVD 788
Query: 209 SGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM---AEDSNHIN 264
I A +F++MK C P+ T N+++ A + E+ +K+ +EM +S ++
Sbjct: 789 ENLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVT 848
Query: 265 REYDKKGLVIP-------DIY-------------TFNTMLDACAAEKRWDDLELVYKRML 304
GLV D+Y T+ +LD + + +D E ++ ML
Sbjct: 849 YNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEML 908
Query: 305 HHGLHFNAKRHLRMILDASR-AGKVE 329
+G N + ++L+ R AG E
Sbjct: 909 DYGCKPNRAIY-NILLNGYRLAGNTE 933
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 122/291 (41%), Gaps = 30/291 (10%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
YNA++ V + A + ++K+ G P TY L+++ M GK ++ E KVQ
Sbjct: 779 YNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDAM---GK-SMRIEDMLKVQ 834
Query: 120 K-----SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
K Y + Y +++ L + EA+ + G + Y L L
Sbjct: 835 KEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKD 894
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQMKNFCSPNLVTC 233
GK E+A D++ KP Y L+ +GN + +F N + +P++ +
Sbjct: 895 GKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSY 954
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
+++ A G +++ F+++ E GL PD+ T+N ++ R
Sbjct: 955 TVLIGALCTAGRLNDSLSYFRQLTE-----------LGLE-PDLITYNLLIHGLGRSGRL 1002
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMIL------DASRAGKV--ELLEITWE 336
++ ++ M G+ N + +IL A+ AGK+ ELL+ W+
Sbjct: 1003 EEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWK 1053
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 99/230 (43%), Gaps = 19/230 (8%)
Query: 80 LQQLKQQGQKP----SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVN 134
LQ K Q+P + + ++E+M A G+ + + F +Q+ + N + +
Sbjct: 96 LQLFKSVAQQPRIVHTTESCNYMLELMRAHGRVRDMAQVFDLMQRQIVKANVGTFLTIFR 155
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194
+L EG A A+ M+ GIV ++ Y L L +G EA+ + P
Sbjct: 156 SLGMEGGLRSAPVALPMMKEAGIVLNSYTYNGLIYFLVKSGYDREAMEVYKVMATDGIVP 215
Query: 195 LVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLF 253
V +Y+ L+ A +++ ++ +M++ PN+ + I ++ + G FEEA K+
Sbjct: 216 SVRTYSVLMLA-FGKRDVETVVWLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKIL 274
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
Q+M ++ PD+ T ++ R D + V+ +M
Sbjct: 275 QKMEDEGCK------------PDVVTNTVLIQILCDAGRVSDAKDVFWKM 312
>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 721
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 137/298 (45%), Gaps = 37/298 (12%)
Query: 1 MSSY---PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDI 57
M+S+ PD V Y ++ L +AG IK ++++ M KK K L PD+
Sbjct: 252 MTSFDCDPDVVTYNTLVDGLCRAGKIKVAHNLVNGM----SKKCKD---------LSPDV 298
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
V Y ++ R+++ + A +L+++ +G KP+ TY +++ + K++ + E +
Sbjct: 299 VTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQ 358
Query: 118 VQK--SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
++ IP+A + L+N+ G DEA E+M++ + +A Y L R LC G
Sbjct: 359 MKGDGGSIPDACTFNTLINSHCCAGNLDEAFKVFENMKKLEVSADSASYSVLIRTLCQKG 418
Query: 176 KCEEALMQMDK-------ICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP 228
+A M D+ + KPL SY + Q ++G + A + Q+ +
Sbjct: 419 DYGKAEMLFDELFEKEILLSSYGPKPLAASYKCMFQYLCENGKTKKAERVLRQLMKRGTQ 478
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+ ++ I++ + + G +E L M + R++ +PDI ++ ++D
Sbjct: 479 DPLSYQIVILGHCKEGSYENGYGLLVWM------LRRDF------LPDIDIYDYLIDG 524
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 126/295 (42%), Gaps = 25/295 (8%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFW----VLQQLKQQGQKPSATTYGLVMEVMLAC 105
+ R ++ + + N+ +R G F + + +K G P T+ V+ V+L
Sbjct: 144 EKRSNGEVKLEDRFFNSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKR 203
Query: 106 GKYNLVYEFFRKVQKSY--IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ N+ E + ++ K+Y P+ Y +L+ + DE ++M
Sbjct: 204 GRTNMAKEVYDEMLKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVT 263
Query: 164 YYDLARCLCSAGKCEEA---LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y L LC AGK + A + M K CK + P VV+YT LI+ + A I
Sbjct: 264 YNTLVDGLCRAGKIKVAHNLVNGMSKKCKDLS-PDVVTYTTLIRGYCRKQEVDEALDILE 322
Query: 221 QMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
+M PN+VT N ++K E +++ ++ ++M D G IPD T
Sbjct: 323 EMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGD-----------GGSIPDACT 371
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH---LRMILDASRAGKVELL 331
FNT++++ D+ V++ M + ++ + +R + GK E+L
Sbjct: 372 FNTLINSHCCAGNLDEAFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEML 426
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 114/262 (43%), Gaps = 25/262 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V + S+ + L + G +V D M L+ + ++PD YN ++
Sbjct: 188 PGVVTFNSVLLVLLKRGRTNMAKEVYDEM------------LKTYG--VKPDTYTYNILI 233
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK----YNLVYEFFRKVQK 120
+ + F+ +++ P TY +++ + GK +NLV +K K
Sbjct: 234 RGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRAGKIKVAHNLVNGMSKKC-K 292
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA---GKC 177
P+ + Y L+ R+ + DEA+ +E+M RG+ + Y L + LC A K
Sbjct: 293 DLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKM 352
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIM 236
+E L QM + P ++ LI + +GN+ A +F MK S + + +++
Sbjct: 353 KEILEQMKG--DGGSIPDACTFNTLINSHCCAGNLDEAFKVFENMKKLEVSADSASYSVL 410
Query: 237 VKAYLEHGLFEEAMKLFQEMAE 258
++ + G + +A LF E+ E
Sbjct: 411 IRTLCQKGDYGKAEMLFDELFE 432
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 47/259 (18%), Positives = 105/259 (40%), Gaps = 23/259 (8%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S PD + ++ + AG++ E F V ++M+ L + D Y+
Sbjct: 364 GSIPDACTFNTLINSHCCAGNLDEAFKVFENMKKL---------------EVSADSASYS 408
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQ-------GQKPSATTYGLVMEVMLACGKYNLVYEF 114
++ ++ + A + +L ++ G KP A +Y + + + GK
Sbjct: 409 VLIRTLCQKGDYGKAEMLFDELFEKEILLSSYGPKPLAASYKCMFQYLCENGKTKKAERV 468
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
R++ K + L+Y++++ +EG + + M RR + +Y L
Sbjct: 469 LRQLMKRGTQDPLSYQIVILGHCKEGSYENGYGLLVWMLRRDFLPDIDIYDYLIDGFLRK 528
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI-QNAAYIFNQMKNFCSPNLVTC 233
K A ++K+ K + KP ++ ++ L+ G + ++A I ++ N+
Sbjct: 529 DKPLLAKETLEKMLKSSYKPQTSTWHSILNRLLEQGCVHESAGVIVMMLERNIRQNINFS 588
Query: 234 NIMVKAYLEHGLFEEAMKL 252
++ + GL ++A K+
Sbjct: 589 TKCLQLLFDRGLQDKAFKI 607
>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
Length = 988
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 146/333 (43%), Gaps = 35/333 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV Y + L +A +E D ++ MR+ T L P++V Y+ +L
Sbjct: 300 PDTVFYTKLISGLCEASLFEEAMDFLNRMRA-------TSCL--------PNVVTYSTLL 344
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
C+ +KQ VL + +G PS + ++ G ++ Y+ +K+ K +
Sbjct: 345 CGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHT 404
Query: 124 PNALAYKVLVNTLWREGKT------DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
P + Y +L+ ++ + + + A A +M G+V + RCLCSAGK
Sbjct: 405 PGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKY 464
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIM 236
E+A + ++ P +Y+ ++ ++ ++ A +F +MK ++ T IM
Sbjct: 465 EKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIM 524
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
V ++ + GL E+A K F EM E P++ T+ ++ A K+
Sbjct: 525 VDSFCKAGLIEQARKWFNEMREVG------------CTPNVVTYTALIHAYLKAKKVSYA 572
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+++ ML G N + +I +AG++E
Sbjct: 573 NELFETMLSEGCLPNIVTYSALIDGHCKAGQME 605
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 119/264 (45%), Gaps = 16/264 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM---RSLPK-----KKFKTGTLERWDPRLEPD 56
P+ V Y ++ +AG +++ + + M + +P K++ ER P+
Sbjct: 586 PNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSER------PN 639
Query: 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR 116
+V+Y A+L+ + + E A +L + +G +P+ Y +++ + GK + E
Sbjct: 640 VVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKA 699
Query: 117 KVQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
++ + P L Y L++ ++ + D A + M + +Y ++ LC G
Sbjct: 700 EMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVG 759
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCN 234
K +EA M + + +P VV+YT +I G I+ + +M + +PN VT
Sbjct: 760 KTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYR 819
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAE 258
+++ ++G + A L +EM +
Sbjct: 820 VLIDHCCKNGALDVAHNLLEEMKQ 843
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/319 (20%), Positives = 128/319 (40%), Gaps = 35/319 (10%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD Y+ VL + E AF + +++K+ G TY ++++ G ++
Sbjct: 481 PDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 540
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F ++++ PN + Y L++ + K A E M G + + Y L C
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 600
Query: 174 AGKCEEALMQMDKICKV-----------------ANKPLVVSYTGLIQACLDSGNIQNAA 216
AG+ E+A +++C + +P VV Y L+ ++ A
Sbjct: 601 AGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEAR 660
Query: 217 YIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
+ + M C PN + + ++ + G +EA ++ EM+E
Sbjct: 661 KLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHG------------FPA 708
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LL 331
+YT+++++D KR D V +ML + N + MI + GK + L+
Sbjct: 709 TLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLM 768
Query: 332 EITWEHLARADRITPPALI 350
++ E + + +T A+I
Sbjct: 769 QMMEEKGCQPNVVTYTAMI 787
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 9/211 (4%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWV----LQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ D V+ LN VR+ G+F + L +LK +PS +TY +++ L +
Sbjct: 193 DDDKEVFGEFLNVLVRKYCRSGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADCLD 252
Query: 110 LVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
R++ + + + + +L + GK EA++ ME V Y L
Sbjct: 253 SASLVHREMSLANLRMDGFTLRCYAYSLCKVGKWREALTL---METENFVPDTVFYTKLI 309
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCS 227
LC A EEA+ ++++ + P VV+Y+ L+ CL+ + + N M C
Sbjct: 310 SGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCY 369
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
P+ N +V AY G A KL ++M +
Sbjct: 370 PSPKIFNSLVHAYCTSGDHSYAYKLLKKMVK 400
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/256 (18%), Positives = 112/256 (43%), Gaps = 21/256 (8%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S P+ V Y + L + G E + ++ M + +P++V Y
Sbjct: 740 SCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMME---------------EKGCQPNVVTYT 784
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
A+++ R + E +L+++ +G P+ TY ++++ G ++ + +++++
Sbjct: 785 AMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQT 844
Query: 122 YIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ P +A Y+ ++ +E E++ ++++ + +LY L L A + E A
Sbjct: 845 HWPTHAAGYRKVIEGFNKE--FIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMA 902
Query: 181 LMQMDKICKVANKPLVVS--YTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMV 237
L ++++ + + S Y LI++ + + A +F++M K P + T ++
Sbjct: 903 LRLLEEVATFSATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQTFCSLI 962
Query: 238 KAYLEHGLFEEAMKLF 253
K + EA+ L
Sbjct: 963 KGLFRNSKISEALLLL 978
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 83/205 (40%), Gaps = 23/205 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
P+ V Y ++ G+ G I+ ++++ M R L K G L+
Sbjct: 778 PNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNL 837
Query: 53 LEPDIVVYNAVLNACVRRKQWEG-------AFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
LE ++ + +A RK EG + +L ++ Q P + Y L+++ ++
Sbjct: 838 LE-EMKQTHWPTHAAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKA 896
Query: 106 GKYNLVYEFFRKV---QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+ + +V + + + Y L+ +L K D+A +M ++G++
Sbjct: 897 QRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQ 956
Query: 163 LYYDLARCLCSAGKCEEALMQMDKI 187
+ L + L K EAL+ +D I
Sbjct: 957 TFCSLIKGLFRNSKISEALLLLDFI 981
>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
Length = 543
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 118/263 (44%), Gaps = 49/263 (18%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
+ YN ++ + E AF +L ++K++G P T+ +++ + G + ++FR+
Sbjct: 106 ITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRE 165
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+ P+++ + +LV+ L + + EA +E+M RGIV Y L LC + +
Sbjct: 166 SVEC-APDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRM 224
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSG-----------NIQNAAY----IFNQM 222
EEA ++ + K +P +V+Y LI +G IQ+ + FN +
Sbjct: 225 EEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSL 284
Query: 223 ---------------------KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSN 261
K C+PNLVT N+++ + G EA +L EM
Sbjct: 285 ISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEM----- 339
Query: 262 HINREYDKKGLVIPDIYTFNTML 284
D +G ++PDI T+N+++
Sbjct: 340 ------DGRG-ILPDIITYNSLI 355
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/328 (21%), Positives = 132/328 (40%), Gaps = 29/328 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ L ++ ++E ++++M K+K + P++V YN ++
Sbjct: 206 PDVVTYNSLIDGLCKSYRMEEARQLLETM---VKRKVR------------PNLVTYNTLI 250
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ A +++++ Q G P T+ ++ K + E ++K
Sbjct: 251 YGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCA 310
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y VL++ L G+ +EA + +M+ RGI+ Y L C + E+A
Sbjct: 311 PNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQI 370
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLE 242
+ + + P +SY L A L S A + + M + + PNL T N +++
Sbjct: 371 QNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCC 430
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+EA L M ++ P T+ ++ R DD + V
Sbjct: 431 SRRLDEARHLLAVM------------RRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVM 478
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVEL 330
M+ G+ ++ +R GK +L
Sbjct: 479 MVSEGIQPLVSSSGTIVHTLAREGKQDL 506
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 90/220 (40%), Gaps = 18/220 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPR-LEPDIVVYNAV 63
P+ V Y + L AG E +++ M D R + PDI+ YN++
Sbjct: 311 PNLVTYNVLISGLCDAGRANEACELLSEM----------------DGRGILPDIITYNSL 354
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSY 122
+ R Q E AF + + ++G P +Y + +L +++ + +
Sbjct: 355 IGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGA 414
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
IPN + L+ L + DEA + M R G +A+ Y L LC AG+ ++A
Sbjct: 415 IPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKE 474
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+ + +PLV S ++ G A + F+Q+
Sbjct: 475 VLVMMVSEGIQPLVSSSGTIVHTLAREGKQDLALHYFDQV 514
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/238 (20%), Positives = 90/238 (37%), Gaps = 50/238 (21%)
Query: 94 TYGLVMEVMLACGKYNLVYEFFRK--VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVED 151
T ++ ++ +++ Y+ FR + + N + Y L+ + G + A + +
Sbjct: 71 TCNCLLRTLVKARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAE 130
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEAL-----------------MQMDKICKVANK- 193
M+ RG + + + LC+ G A+ + + +CK AN+
Sbjct: 131 MKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVECAPDSVLFNILVHGLCK-ANQL 189
Query: 194 ----------------PLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIM 236
P VV+Y LI S ++ A + M K PNLVT N +
Sbjct: 190 SEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTL 249
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
+ Y + G A +L + M + H PD+ TFN+++ + + D
Sbjct: 250 IYGYCKTGCTGLAHQLIERMIQSGTH------------PDVVTFNSLISGFCQKSKID 295
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 24/205 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y S+ + I++ F + + M +ER + PD + Y +
Sbjct: 346 PDIITYNSLIGIFCRNFQIEQAFQIQNLM------------VERG---VIPDGISYCTLA 390
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
A ++ ++++ AF +L + G P+ T+ +ME + + + +++
Sbjct: 391 VALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCD 450
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI----VGSAALYYDLARCLCSAGKCEE 179
P A Y+VLV L + G+ D+A + M GI S + + LAR GK +
Sbjct: 451 PAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAR----EGKQDL 506
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQ 204
AL D++ +K SY L++
Sbjct: 507 ALHYFDQVVAAESKACDPSYQKLLE 531
>gi|302833221|ref|XP_002948174.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
nagariensis]
gi|300266394|gb|EFJ50581.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
nagariensis]
Length = 1001
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 111/241 (46%), Gaps = 30/241 (12%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE- 113
P++V YN +++ + QWE A VL +K +G +P TY +++AC N E
Sbjct: 212 PNVVTYNTLVDVYGKLGQWERAIHVLDVMKHEGVEPVLRTYN---TLIIACNMCNQPREA 268
Query: 114 ---FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ R + + PN+ Y L++ + + +A+ ++M R+ + S Y L
Sbjct: 269 LAVYQRLLSDGFTPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLISA 328
Query: 171 LCSAGKCEEAL-----MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-N 224
AG+ E AL MQ DK P V+Y L+ AC G + AA +F QM +
Sbjct: 329 CEKAGQWETALRIFNEMQQDKCV-----PNTVTYNSLVTACAQGGQWEKAAEVFEQMNAH 383
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
C+P++VT ++ AY G +++A++ F +M PD +N ++
Sbjct: 384 GCTPDVVTYTALISAYERGGQWQKALQAFHKMCVQGCK------------PDAIVYNAII 431
Query: 285 D 285
D
Sbjct: 432 D 432
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/322 (21%), Positives = 145/322 (45%), Gaps = 23/322 (7%)
Query: 8 VAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNAC 67
V +R++ L + G + ++ D +RS ER R D+ Y A ++ C
Sbjct: 104 VIFRALHHDLSRLGKDRRAMELFDWLRS---------ANERSPLRALCDVYSYTATISLC 154
Query: 68 VRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNA 126
+ + + A ++Q+++ + + + TY +M V + CGK L + + ++ + +PN
Sbjct: 155 IHGQDVDRALELMQEMRSRNIERNVHTYTALMNVCIKCGKLPLALDIYNSMRAVNCMPNV 214
Query: 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK 186
+ Y LV+ + G+ + A+ ++ M+ G+ Y L + EAL +
Sbjct: 215 VTYNTLVDVYGKLGQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQPREALAVYQR 274
Query: 187 ICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGL 245
+ P +Y LI A + + A ++ +M + +++T + ++ A + G
Sbjct: 275 LLSDGFTPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLISACEKAGQ 334
Query: 246 FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
+E A+++F EM +D +P+ T+N+++ ACA +W+ V+++M
Sbjct: 335 WETALRIFNEMQQDK------------CVPNTVTYNSLVTACAQGGQWEKAAEVFEQMNA 382
Query: 306 HGLHFNAKRHLRMILDASRAGK 327
HG + + +I R G+
Sbjct: 383 HGCTPDVVTYTALISAYERGGQ 404
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 113/267 (42%), Gaps = 21/267 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ G+ G + V+D M+ +EP + YN ++
Sbjct: 212 PNVVTYNTLVDVYGKLGQWERAIHVLDVMK---------------HEGVEPVLRTYNTLI 256
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
AC Q A V Q+L G P++TTY ++ + E ++++ + +
Sbjct: 257 IACNMCNQPREALAVYQRLLSDGFTPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMD 316
Query: 125 NA-LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y L++ + G+ + A+ +M++ V + Y L G+ E+A
Sbjct: 317 RSVITYSSLISACEKAGQWETALRIFNEMQQDKCVPNTVTYNSLVTACAQGGQWEKAAEV 376
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+++ P VV+YT LI A G Q A F++M C P+ + N ++ E
Sbjct: 377 FEQMNAHGCTPDVVTYTALISAYERGGQWQKALQAFHKMCVQGCKPDAIVYNAIIDTLWE 436
Query: 243 HGLF---EEAMKLFQEMAEDSNHINRE 266
G+ +A++LF A H ++E
Sbjct: 437 TGIIWAQGKALQLFM-TAVQQGHFHQE 462
>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Brachypodium distachyon]
Length = 814
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 14/234 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+PD ++N++++A + E A +L Q+K +G +P +YG +++
Sbjct: 543 FKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQKAN 602
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E+ ++ + PNA+ Y L+ R G A+ ++ ME GI + Y L +
Sbjct: 603 EYLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQPTNVTYCSLMHWM 662
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
C AG +EA ++ K + + VV YT +IQ G + A F +M++ PN
Sbjct: 663 CHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRSIPPNK 722
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
+T ++ AY + G EEA KLF EM ++PD ++NT++
Sbjct: 723 ITYTTLMYAYCKSGNNEEASKLFDEMVSSG------------IVPDNVSYNTLV 764
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 8/190 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+P+ V+YNA++ R GA VL ++ G +P+ TY +M M G +
Sbjct: 613 LKPNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQPTNVTYCSLMHWMCHAGLVDEAK 672
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F + +K+ I + Y +++ L + GK DEA++ E+M R I + Y L
Sbjct: 673 TMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRSIPPNKITYTTLMYAY 732
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA-----CLDSGNIQNAAYIFNQM-KNF 225
C +G EEA D++ P VSY L+ LD I+ AA I + M +N
Sbjct: 733 CKSGNNEEASKLFDEMVSSGIVPDNVSYNTLVTGFSQVDSLDKA-IEKAAEISSIMTQND 791
Query: 226 CSPNLVTCNI 235
C N++ I
Sbjct: 792 CLDNVLVNRI 801
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 101/212 (47%), Gaps = 12/212 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
+I NA+++ K +GA VL+ + +G + TY ++++ C K + + E
Sbjct: 476 NIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQ---GCCKDSKIEEAL 532
Query: 116 R----KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ ++K + P+A + +++ GK +EA+ + M+ G+ Y +
Sbjct: 533 KLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGY 592
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C A ++A ++++ KP V Y LI +GNI A + + M++ P
Sbjct: 593 CKAKDIQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQPTN 652
Query: 231 VT-CNIMVKAYLEH-GLFEEAMKLFQEMAEDS 260
VT C++M ++ H GL +EA +F++ ++S
Sbjct: 653 VTYCSLM--HWMCHAGLVDEAKTMFEQSRKNS 682
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 139/340 (40%), Gaps = 46/340 (13%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIK---ELFDVIDSMRSLPKKKF---------KTGTL--- 46
SS P + + VT G ++ + F V+ S R+ P K +TG L
Sbjct: 153 SSTPSSDLLINTCVTSSARGSLRLAVDAFHVLSSRRASPSVKTCNALLEALARTGNLGAT 212
Query: 47 -----ERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG--QKPSATTYGLV 98
E D + + P+ Y +++ A + + + F +L L G Q A Y L+
Sbjct: 213 CKVFDEMRDCKTVTPNGYSYTSMIKALCKVGKVDDGFKILSDLIHAGLQQSAGAVPYNLL 272
Query: 99 MEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
M+ + G+ + ++++S + P+ + + +L+N L R + E + + +ME GI
Sbjct: 273 MDALCKSGRVDEAIRLKGRMEESRVAPSMVTFGILINGLKRSDRFGEVGALLREMEGLGI 332
Query: 158 VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217
+ + +L C G EA+ D++ K V+Y + +A G ++ A
Sbjct: 333 TPNEVICNELIDWHCRKGHFTEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEMERAER 392
Query: 218 IFNQM-KNFCSPNLVTCNIMVKAYLEH-GLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
I +M + + N +V L+ G E ++L EM K+G+
Sbjct: 393 ILEEMLSTGMTIHSGLFNSVVAGLLQRTGRLESVVRLISEMV-----------KRGMKPN 441
Query: 276 DIYTFNTMLDACAAE----KRWDDLELVYKRMLHHGLHFN 311
D ++ AC + +R + ++ +ML GL N
Sbjct: 442 D-----ALMTACTKQLCQGRRHQEAVGIWLKMLEKGLCIN 476
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 77/176 (43%), Gaps = 18/176 (10%)
Query: 202 LIQACLDS---GNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
LI C+ S G+++ A F+ + + SP++ TCN +++A G K+F EM
Sbjct: 161 LINTCVTSSARGSLRLAVDAFHVLSSRRASPSVKTCNALLEALARTGNLGATCKVFDEMR 220
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKR-HL 316
+ V P+ Y++ +M+ A + DD + ++H GL +A
Sbjct: 221 DCKT-----------VTPNGYSYTSMIKALCKVGKVDDGFKILSDLIHAGLQQSAGAVPY 269
Query: 317 RMILDA-SRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLV 371
+++DA ++G+V+ I + R+ P + N L+ D + L+
Sbjct: 270 NLLMDALCKSGRVD-EAIRLKGRMEESRVAPSMVTFGILINGLKRSDRFGEVGALL 324
>gi|15237345|ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g16420, mitochondrial; Flags: Precursor
gi|9759124|dbj|BAB09609.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332004907|gb|AED92290.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 535
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 126/278 (45%), Gaps = 13/278 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P++V Y +L V R E A VL+++ +G P ATTY ++M+ G+++
Sbjct: 222 LVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAA 281
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++K+ I PN + Y V++ L +E K+ EA + ++M R + ++L + L
Sbjct: 282 TVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDAL 341
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV 231
C K +EA K+ K P + LI G + A +F++ + P+L+
Sbjct: 342 CEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGSIPSLL 401
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ E G EA +L+ +M Y++K P+ +T+N +++ +
Sbjct: 402 TYNTLIAGMCEKGELTEAGRLWDDM----------YERK--CKPNAFTYNVLIEGLSKNG 449
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ V + ML G N L + + GK E
Sbjct: 450 NVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEE 487
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 120/279 (43%), Gaps = 32/279 (11%)
Query: 27 FDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ 86
FD++ +M K+ F + P+I N ++ A ++ E A+ VL ++
Sbjct: 171 FDLVHAMFKNSKESFG----------ITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSM 220
Query: 87 GQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEA 145
G P+ TY ++ +A G + + + + P+A Y VL++ + G+ EA
Sbjct: 221 GLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEA 280
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+ ++DME+ I + Y + R LC K EA D++ + + P +I A
Sbjct: 281 ATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDA 340
Query: 206 CLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
+ + A ++ +M KN C P+ + ++ + G EA KLF E + S
Sbjct: 341 LCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGS---- 396
Query: 265 REYDKKGLVIPDIYTFNTML-------DACAAEKRWDDL 296
IP + T+NT++ + A + WDD+
Sbjct: 397 ---------IPSLLTYNTLIAGMCEKGELTEAGRLWDDM 426
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 106/238 (44%), Gaps = 15/238 (6%)
Query: 72 QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY--IPNALAY 129
++E + + ++ G K S + ++ V++ +++LV+ F+ ++S+ PN
Sbjct: 135 RYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTC 194
Query: 130 KVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK 189
+LV L ++ + A ++++ G+V + Y + + G E A ++++
Sbjct: 195 NLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLD 254
Query: 190 VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEE 248
P +YT L+ G AA + + M KN PN VT +M++A + E
Sbjct: 255 RGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGE 314
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306
A +F EM E S +PD ++DA + + D+ ++++ML +
Sbjct: 315 ARNMFDEMLERS------------FMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKN 360
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 113/265 (42%), Gaps = 19/265 (7%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD Y + + G E V+D M +EP+ V Y +
Sbjct: 258 YPDATTYTVLMDGYCKLGRFSEAATVMDDMEK---------------NEIEPNEVTYGVM 302
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY- 122
+ A + K+ A + ++ ++ P ++ V++ + K + +RK+ K+
Sbjct: 303 IRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNC 362
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P+ L++ L +EG+ EA ++ E+ G + S Y L +C G+ EA
Sbjct: 363 MPDNALLSTLIHWLCKEGRVTEARKLFDEFEK-GSIPSLLTYNTLIAGMCEKGELTEAGR 421
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYL 241
D + + KP +Y LI+ +GN++ + +M C PN T I+ +
Sbjct: 422 LWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQ 481
Query: 242 EHGLFEEAMKLFQEMAEDSNHINRE 266
+ G E+AMK+ MA + +++E
Sbjct: 482 KLGKEEDAMKIVS-MAVMNGKVDKE 505
>gi|297740763|emb|CBI30945.3| unnamed protein product [Vitis vinifera]
Length = 796
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/353 (22%), Positives = 151/353 (42%), Gaps = 63/353 (17%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V Y +I + + G + + ++++ M F G + PD+V Y +V+N
Sbjct: 407 DKVGYSAIVHSFCREGRMDKAKEIVNEM-------FSKGCI--------PDVVTYTSVIN 451
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-IP 124
+ ++ + A +L+Q+ + G KP+ +Y ++ + G E ++ + IP
Sbjct: 452 GLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIP 511
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
NA+ Y VL++ REGK+ EA V +M ++G + L + LC K +EA
Sbjct: 512 NAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEA---- 567
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHG 244
++ CL++G C+ N+V ++ + +
Sbjct: 568 ---------------KRFMEQCLNNG---------------CAVNVVNFTTVIHGFCQKD 597
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
E A+ L +M + H PD+ T+ T++DA + R ++ + +ML
Sbjct: 598 DLEAALSLLDDMYLSNKH------------PDVVTYTTIIDALGKKGRIEEATKLAMKML 645
Query: 305 HHGLHFNAKRHLRMILDASRAGKVE-LLEITWEHLARADRITPPALIKERFCN 356
GL + +I R G+VE LL++ + L+R + T + E+ C+
Sbjct: 646 RVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRTAYNQVIEKLCS 698
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 115/261 (44%), Gaps = 15/261 (5%)
Query: 55 PDIVVYNAVLN-ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
PD + Y V+ C ++ E + + LK P TY + ++ G + E
Sbjct: 335 PDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALE 394
Query: 114 FFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F R+ + + + + + Y +V++ REG+ D+A V +M +G + Y + LC
Sbjct: 395 FLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLC 454
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
K ++A + ++ K KP VSYT L+ +GN A + N +++ PN +
Sbjct: 455 QERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAI 514
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T ++++ + G EA L +EM KKG P N ++ + E+
Sbjct: 515 TYSVLMHGFRREGKSSEACDLVREMI-----------KKGF-FPTPVEINLLIQSLCQEE 562
Query: 292 RWDDLELVYKRMLHHGLHFNA 312
+ D+ + ++ L++G N
Sbjct: 563 KVDEAKRFMEQCLNNGCAVNV 583
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/268 (20%), Positives = 114/268 (42%), Gaps = 17/268 (6%)
Query: 48 RWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK 107
R DP P+ Y V+ + R + A VL +++ G +P + + V++ +
Sbjct: 225 RHDPIRRPEAFGY--VMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNR 282
Query: 108 YNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
+ F ++Q I PN + Y L+ + ++A+ + +M +G YY
Sbjct: 283 LDKAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYT 342
Query: 167 LARCLCSAGKCEEALMQMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNA-AYIFNQMKN 224
+ LC + +E + M+K+ K +N P V+Y + G+ A ++ +
Sbjct: 343 VMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEER 402
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
+ V + +V ++ G ++A ++ EM KG IPD+ T+ +++
Sbjct: 403 RFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMF-----------SKG-CIPDVVTYTSVI 450
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNA 312
+ E++ D + + ++M HG N
Sbjct: 451 NGLCQERKVDQAKKMLRQMYKHGCKPNT 478
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 10/208 (4%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
++V + V++ ++ E A +L + + P TY +++ + G+ +
Sbjct: 582 NVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLA 641
Query: 116 RKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
K+ + IP + Y+ +++ R G+ ++ + +E M R +A Y + LCS
Sbjct: 642 MKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRTA--YNQVIEKLCSF 699
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG----NIQNAAYIFNQMKNFCSPNL 230
G E+A + K+ + A+K + LI++ L G + A +FN +N P+L
Sbjct: 700 GNLEQAYKLLGKVLRTASKIDANTCHMLIESYLSKGIPLMSYNVACRMFN--RNLI-PDL 756
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
C + K + G EEA KL E
Sbjct: 757 KLCEKVSKKLMLEGKSEEADKLILRFVE 784
>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
Length = 855
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 123/266 (46%), Gaps = 21/266 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDP----------RLE 54
P+ V Y ++ L +AG+I + F+V + GT + D L
Sbjct: 391 PNDVTYGALVDGLCKAGNISKAFEVYAKL---------IGTSDSADSDFYFPCEDRHTLA 441
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V Y A+++ + + + A +L + G +P+ Y +++ GK + E
Sbjct: 442 PNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEV 501
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F ++ K Y+P+ Y L++ ++++G+ D A+ + M + + Y + LC
Sbjct: 502 FLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCR 561
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+ E+AL + + + P VV+YT LI +G I + +F QM + CSPN VT
Sbjct: 562 IGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVT 621
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAE 258
+++ GL ++A L EM +
Sbjct: 622 YRVLINHLCAAGLLDKARLLLGEMKQ 647
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 142/343 (41%), Gaps = 45/343 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + + +AG I++ + + MRS+ P +V Y A++
Sbjct: 321 PDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVG---------------CSPTVVTYTALI 365
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV------ 118
+A ++ KQ A + ++ G +P+ TYG +++ + G + +E + K+
Sbjct: 366 HAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDS 425
Query: 119 -----------QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ + PN + Y LV+ L + K D A ++ M G + +Y L
Sbjct: 426 ADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDAL 485
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
C AGK + A ++ K P V +YT LI G + A + +QM K+ C
Sbjct: 486 IDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSC 545
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+PN+VT M+ G E+A+KL M E KG P++ T+ ++D
Sbjct: 546 TPNVVTYTAMIDGLCRIGESEKALKLLSLMEE-----------KGCS-PNVVTYTALIDG 593
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ D ++ +M G N + +I AG ++
Sbjct: 594 LGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLD 636
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 108/230 (46%), Gaps = 6/230 (2%)
Query: 106 GKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
GK++ ++ +++ +K ++P+ Y ++ L K ++A ++M+ G+ Y
Sbjct: 267 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 326
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
L C AG E+A +++ V P VV+YT LI A L + + A IF++M +
Sbjct: 327 TILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVD 386
Query: 225 F-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY----DKKGLVIPDIYT 279
C PN VT +V + G +A +++ ++ S+ + ++ + + + P++ T
Sbjct: 387 AGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVT 446
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ ++D + D + ML G N + +I +AGK++
Sbjct: 447 YGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKID 496
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/282 (18%), Positives = 118/282 (41%), Gaps = 20/282 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V Y +L+ +++KQ ++ + +G P+ + + ++ Y Y+
Sbjct: 140 PNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKL 199
Query: 115 FRKVQKSYIPNA-LAYKVLVNTLWREGKT------DEAVSAVEDMERRGIVGSAALYYDL 167
++ P + Y + + ++ + K D A +M V + +
Sbjct: 200 LNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANF 259
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-C 226
ARCLC GK ++A + ++ + P +Y+ +I + ++ A +F +MK
Sbjct: 260 ARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGV 319
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+P++ T I++ ++ + GL E+A LF+EM P + T+ ++ A
Sbjct: 320 TPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCS------------PTVVTYTALIHA 367
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
K+ ++ RM+ G N + ++ +AG +
Sbjct: 368 YLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNI 409
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V Y A+++ + + + + + Q+ ++G P+ TY +++ + A G +
Sbjct: 582 PNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLL 641
Query: 115 FRKVQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++++Y P L Y+ + + ++ +E+ME G V A +Y L C
Sbjct: 642 LGEMKQTYWPKYLQGYRCAIQGFSKSFIA--SLGILEEMESYGTVPIAPVYGMLIDCFSK 699
Query: 174 AGKCEEA------LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNF 225
AG+ E A +M++ K N Y LIQA + ++ A ++++M + F
Sbjct: 700 AGRLEIAMELHKEMMEVPSSVKTDND----MYASLIQALCLASQVEEAFRLYSEMTRRGF 755
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKL 252
P L ++K +E ++EA++L
Sbjct: 756 -VPELSVFVCLIKGLVEVKKWDEALQL 781
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 39/228 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS----------------------LPKKKFK 42
P+ V Y ++ LG+AG I D+ M L K +
Sbjct: 582 PNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLL 641
Query: 43 TGTLER--WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
G +++ W L+ Y + K + + +L++++ G P A YG++++
Sbjct: 642 LGEMKQTYWPKYLQG----YRCAIQG--FSKSFIASLGILEEMESYGTVPIAPVYGMLID 695
Query: 101 VMLACGKYNLVYEFFRKVQKSYIPNAL-----AYKVLVNTLWREGKTDEAVSAVEDMERR 155
G+ + E +++ + +P+++ Y L+ L + +EA +M RR
Sbjct: 696 CFSKAGRLEIAMELHKEMME--VPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRR 753
Query: 156 GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLI 203
G V +++ L + L K +EAL IC L++SYT I
Sbjct: 754 GFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEVG--LLLSYTTQI 799
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 83/197 (42%), Gaps = 5/197 (2%)
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
A L A +RR A LK G +PS TY +++V+ + G+ +L + +++ +S
Sbjct: 10 ATLRASLRRTCSHAAGDSEDPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSES 69
Query: 122 -YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ + + L +EG+ +A+ + ER L + L A +EA
Sbjct: 70 GFCMDRFTVGCFAHALCKEGRWADALDMI---EREDFKLDTVLCTHMISGLMEASYFDEA 126
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCSPNLVTCNIMVKA 239
+ + ++ + P VV+Y L+ L + I N M C+PN N +V +
Sbjct: 127 MSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHS 186
Query: 240 YLEHGLFEEAMKLFQEM 256
Y + A KL M
Sbjct: 187 YCNEKDYAYAYKLLNRM 203
>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
Length = 628
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 144/344 (41%), Gaps = 76/344 (22%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + L +AG + + ++++ M + G + PD+V + +++
Sbjct: 185 PDVVTYNTFISGLCKAGKLDKGLEMLEEMD-------RGG--------IPPDVVTFCSII 229
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY----------------------------G 96
+ + + + AF V + + ++G P + TY G
Sbjct: 230 SGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAG 289
Query: 97 LVMEV---------MLACGKYNLVYE-FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAV 146
VMEV + GK+ L ++ +PN L+Y +++ L + G D+A
Sbjct: 290 CVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAW 349
Query: 147 SAVEDMERRGIVGSAALYYD-LARCLCSAGKCEEAL-----MQMDKICKVANKPLVVSYT 200
M G ++++ L C AG+ +A M+ IC P VV+Y
Sbjct: 350 KLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNIC----VPDVVTYN 405
Query: 201 GLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
LI G+++ A + +M+ C PN+VT ++ Y +HG++EEA LF EM+
Sbjct: 406 TLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMS-- 463
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
KG PDI T+NT+L A + E VY+++
Sbjct: 464 ---------AKG-CFPDIITYNTVLSAFSKAGMMSKAEGVYQQL 497
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/290 (19%), Positives = 131/290 (45%), Gaps = 16/290 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V YN ++ + + + +L+++ + G P T+ ++ + + + ++
Sbjct: 185 PDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQV 244
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDME--RRGIVGSAALYYDLARCL 171
F+ +++ +P++L Y ++++ L R + D +E M+ + G V + L
Sbjct: 245 FKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGAL 304
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPN 229
C +GK A + + + + P ++SY +I SGN+ +A + +M C P+
Sbjct: 305 CRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPD 364
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
++ N ++ + + G +A +L EM K + +PD+ T+NT++D +
Sbjct: 365 VIFFNTLISGFCKAGRLSQAHQLLIEMK-----------AKNICVPDVVTYNTLIDGQSK 413
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
+L+ + M G N + +I ++ G E E ++ ++
Sbjct: 414 FGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMS 463
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 122/290 (42%), Gaps = 45/290 (15%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D P++V Y A+++ + ++ A ++++ + G +P TY ++ + + +
Sbjct: 38 DAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMD 97
Query: 110 LVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
++ V+ + PN + Y LV R + D+A + +M RG V + +Y D
Sbjct: 98 DAGLVLQELVRNGFAPNHITYSTLVIWNCRRRRLDQARGLIREMILRGSVCNLVVYID-- 155
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP 228
C G CE C+ ++ ++SG I P
Sbjct: 156 ---CIFGFCEARCQSSRYECRDGDEM------------IESGRI---------------P 185
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
++VT N + + G ++ +++ +EM +G + PD+ TF +++
Sbjct: 186 DVVTYNTFISGLCKAGKLDKGLEMLEEM------------DRGGIPPDVVTFCSIISGLC 233
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
R DD V+K ML G ++ + M+ + SRA +++ ++ EH+
Sbjct: 234 KANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHM 283
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 80/398 (20%), Positives = 156/398 (39%), Gaps = 84/398 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L +A + D I ++ K+ ++G EPD+V YN+++
Sbjct: 43 PNVVTYTALIDGLCKA---RRPHDAIQTV----KRMLRSGC--------EPDLVTYNSLI 87
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----------------GLVMEVMLACGK 107
+ + + A VLQ+L + G P+ TY GL+ E++L
Sbjct: 88 HGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVIWNCRRRRLDQARGLIREMILRGSV 147
Query: 108 YNLV------YEFFRK---------------VQKSYIPNALAYKVLVNTLWREGKTDEAV 146
NLV + F ++ IP+ + Y ++ L + GK D+ +
Sbjct: 148 CNLVVYIDCIFGFCEARCQSSRYECRDGDEMIESGRIPDVVTYNTFISGLCKAGKLDKGL 207
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
+E+M+R GI + + LC A + ++A + + P ++Y+ ++
Sbjct: 208 EMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNL 267
Query: 207 LDSGNIQNAAYIFNQ---MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
+ + + MK C + T N + A G F A + M E +
Sbjct: 268 SRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGS-- 325
Query: 264 NREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG------LHFNAKRHLR 317
+P++ ++N ++D DD + ++ML G + FN
Sbjct: 326 ----------LPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNT----- 370
Query: 318 MILDASRAGKVE-----LLEITWEHLARADRITPPALI 350
+I +AG++ L+E+ +++ D +T LI
Sbjct: 371 LISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLI 408
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 112/259 (43%), Gaps = 19/259 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNLVYE 113
P+++ YN V++ + + A+ + +++ G KP + ++ G+ + ++
Sbjct: 327 PNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQ 386
Query: 114 FF--RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
K + +P+ + Y L++ + G +A +++M+ G + Y L
Sbjct: 387 LLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGY 446
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN---FCSP 228
G EEA D++ P +++Y ++ A +G + A ++ Q+KN +CSP
Sbjct: 447 AKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSP 506
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
+ +T I++ Y E+ + L QEM +G D YT+N ++ A
Sbjct: 507 DAITYRILIDGYCRAEDTEQGLTLLQEMT-----------ARGWSC-DSYTYNVLIAKLA 554
Query: 289 AEKRWDDLEL-VYKRMLHH 306
+ L VY++ML
Sbjct: 555 ETEEVPSKALAVYQQMLDQ 573
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 106/263 (40%), Gaps = 51/263 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ + G +K+ ++ M+++ K P++V Y A++
Sbjct: 399 PDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCK---------------PNVVTYAALI 443
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG---KYNLVYEFFRKVQKS 121
N + +E A + ++ +G P TY V+ G K VY+ +
Sbjct: 444 NGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSY 503
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
P+A+ Y++L++ R T++ ++ +++M RG + Y L +
Sbjct: 504 CSPDAITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVL-------------I 550
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241
++ + +V +K L V L Q C+ S A IFN + V+ +L
Sbjct: 551 AKLAETEEVPSKALAVYQQMLDQDCVPS------ASIFNSL--------------VRLFL 590
Query: 242 EHGLFEEAMKLFQEMAEDSNHIN 264
G A + QEM E + ++
Sbjct: 591 RTGDVNSARSMVQEMNEKGHLVD 613
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
M G S Y L LC +G + A + K+ P VV+YT LI +
Sbjct: 1 MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARR 60
Query: 212 IQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS---NHI 263
+A +M ++ C P+LVT N ++ ++A + QE+ + NHI
Sbjct: 61 PHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHI 116
>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 117/242 (48%), Gaps = 14/242 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V YN +++ + K+ + AF L+ + +G +P+ T+ +++ + G+ E
Sbjct: 16 PNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEV 75
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ +K Y+P+ + Y LVN +EG +A+ +M R G+ + Y L +C
Sbjct: 76 LVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCK 135
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
AG A+ D++ P +YT +I G + A + N+M ++ P++VT
Sbjct: 136 AGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVT 195
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ + G EEA+ L Q+M KG V+PD+ +++T++ A +
Sbjct: 196 YNALINGHCVLGRMEEAIGLLQDMV-----------GKG-VLPDVVSYSTIISGFARNQE 243
Query: 293 WD 294
D
Sbjct: 244 LD 245
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/306 (23%), Positives = 127/306 (41%), Gaps = 29/306 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + + I L + G +KE +V+ M +K + PD V YN ++
Sbjct: 51 PNLITFNMIINGLCRDGRLKETSEVLVEM---SRKGYV------------PDEVTYNTLV 95
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
N + + A + ++ + G P+ TY ++ M G N EFF ++ +
Sbjct: 96 NGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLC 155
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y ++N ++G DEA + +M R G + S Y L C G+ EEA+
Sbjct: 156 PNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGL 215
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + P VVSY+ +I + + A + +M P+ VT + +++ E
Sbjct: 216 LQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCE 275
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
EA +FQEM + PD +T+ T+++A E + ++
Sbjct: 276 QRRLTEACDMFQEMLTIK------------LPPDEFTYTTLINAYCKEGDLNKALHLHDE 323
Query: 303 MLHHGL 308
M+ G
Sbjct: 324 MIQKGF 329
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 106/232 (45%), Gaps = 16/232 (6%)
Query: 80 LQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWR 138
+++++ G P+ TY +++ + + + F R + K PN + + +++N L R
Sbjct: 6 FKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCR 65
Query: 139 EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
+G+ E + +M R+G V Y L C G +AL+ ++ + P VV+
Sbjct: 66 DGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVT 125
Query: 199 YTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
YT LI + +GN+ A F+QM + C PN T ++ + + GL +EA ++ EM
Sbjct: 126 YTSLINSMCKAGNLNRAMEFFDQMHVRGLC-PNERTYTTIINGFAQQGLLDEAYRVLNEM 184
Query: 257 AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
IP I T+N +++ R ++ + + M+ G+
Sbjct: 185 TRSG------------FIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGV 224
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/290 (20%), Positives = 119/290 (41%), Gaps = 37/290 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
P+ Y +I Q G + E + V++ M +L G +E
Sbjct: 156 PNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGL 215
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L+ PD+V Y+ +++ R ++ + AF + ++ + P A TY +++ +
Sbjct: 216 LQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCE 275
Query: 105 CGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
+ + F+++ +P + Y L+N +EG ++A+ ++M ++G + A
Sbjct: 276 QRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVT 335
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD--------------- 208
Y L L + +EA + K+ + P V+Y LI+ C +
Sbjct: 336 YNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCM 395
Query: 209 SGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
G + A +F M N PN N+++ + G +A KL++EM
Sbjct: 396 KGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMV 445
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 91/245 (37%), Gaps = 35/245 (14%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S PD V Y S+ L + + E D+ M ++ +L PD Y
Sbjct: 258 SVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTI---------------KLPPDEFTYT 302
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
++NA + A + ++ Q+G P A TY +++ K E R + K
Sbjct: 303 TLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLIN---GLNKQARSKEARRLLLKL 359
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+ +++ V NTL E SAV L + C G +EA
Sbjct: 360 FYDDSIPSAVTYNTLIENCCNIEFKSAVA----------------LVKGFCMKGLMDEAD 403
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAY 240
+ + +KP Y +I GN+ A ++ +M + P+ VT +VKA
Sbjct: 404 QVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLALVKAL 463
Query: 241 LEHGL 245
G+
Sbjct: 464 FTEGM 468
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 26/135 (19%)
Query: 219 FNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA-------------------- 257
F +M +N C PN+VT N M+ Y + +EA + M
Sbjct: 6 FKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCR 65
Query: 258 ----EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK 313
++++ + E +KG V PD T+NT+++ E + +++ M+ +GL N
Sbjct: 66 DGRLKETSEVLVEMSRKGYV-PDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVV 124
Query: 314 RHLRMILDASRAGKV 328
+ +I +AG +
Sbjct: 125 TYTSLINSMCKAGNL 139
>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
Length = 801
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 123/266 (46%), Gaps = 21/266 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDP----------RLE 54
P+ V Y ++ L +AG+I + F+V + GT + D L
Sbjct: 391 PNDVTYGALVDGLCKAGNISKAFEVYAKL---------IGTSDSADSDFYFPCEDRHTLA 441
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V Y A+++ + + + A +L + G +P+ Y +++ GK + E
Sbjct: 442 PNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEV 501
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F ++ K Y+P+ Y L++ ++++G+ D A+ + M + + Y + LC
Sbjct: 502 FLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCR 561
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+ E+AL + + + P VV+YT LI +G I + +F QM + CSPN VT
Sbjct: 562 IGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVT 621
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAE 258
+++ GL ++A L EM +
Sbjct: 622 YRVLINHLCAAGLLDKARLLLGEMKQ 647
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 129/308 (41%), Gaps = 45/308 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + + +AG I++ + + MRS+ P +V Y A++
Sbjct: 321 PDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVG---------------CSPTVVTYTALI 365
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV------ 118
+A ++ KQ A + ++ G +P+ TYG +++ + G + +E + K+
Sbjct: 366 HAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDS 425
Query: 119 -----------QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ + PN + Y LV+ L + K D A ++ M G + +Y L
Sbjct: 426 ADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDAL 485
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
C AGK + A ++ K P V +YT LI G + A + +QM K+ C
Sbjct: 486 IDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSC 545
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+PN+VT M+ G E+A+KL M E KG P++ T+ ++D
Sbjct: 546 TPNVVTYTAMIDGLCRIGESEKALKLLSLMEE-----------KGCS-PNVVTYTALIDG 593
Query: 287 CAAEKRWD 294
+ D
Sbjct: 594 LGKAGKID 601
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 108/230 (46%), Gaps = 6/230 (2%)
Query: 106 GKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
GK++ ++ +++ +K ++P+ Y ++ L K ++A ++M+ G+ Y
Sbjct: 267 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 326
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
L C AG E+A +++ V P VV+YT LI A L + + A IF++M +
Sbjct: 327 TILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVD 386
Query: 225 F-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY----DKKGLVIPDIYT 279
C PN VT +V + G +A +++ ++ S+ + ++ + + + P++ T
Sbjct: 387 AGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVT 446
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ ++D + D + ML G N + +I +AGK++
Sbjct: 447 YGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKID 496
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/372 (20%), Positives = 150/372 (40%), Gaps = 79/372 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L +A + +++D+M S EP+ +VY+A++
Sbjct: 442 PNVVTYGALVDGLCKAHKVDHAHELLDAMLS---------------SGCEPNHIVYDALI 486
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ + + + A V Q+ + G PS TY +++ M G+ +L + ++ K S
Sbjct: 487 DGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCT 546
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y +++ L R G++++A+ + ME +G + Y L L AGK + +L
Sbjct: 547 PNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDL 606
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVT---CNI----- 235
++ + P V+Y LI +G + A + +MK P + C I
Sbjct: 607 FTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSK 666
Query: 236 --------------------------MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD- 268
++ + + G E AM+L +EM E + + + D
Sbjct: 667 SFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDM 726
Query: 269 -------------------------KKGLVIPDIYTFNTMLDACAAEKRWDD-LELVYKR 302
++G V P++ F ++ K+WD+ L+L Y
Sbjct: 727 YASLIQALCLASQVEEAFRLYSEMTRRGFV-PELSVFVCLIKGLVEVKKWDEALQLCYG- 784
Query: 303 MLHHGLHFNAKR 314
+ H G+++ +
Sbjct: 785 ICHEGVNWQGNK 796
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/282 (18%), Positives = 118/282 (41%), Gaps = 20/282 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V Y +L+ +++KQ ++ + +G P+ + + ++ Y Y+
Sbjct: 140 PNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKL 199
Query: 115 FRKVQKSYIPNA-LAYKVLVNTLWREGKT------DEAVSAVEDMERRGIVGSAALYYDL 167
++ P + Y + + ++ + K D A +M V + +
Sbjct: 200 LNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANF 259
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-C 226
ARCLC GK ++A + ++ + P +Y+ +I + ++ A +F +MK
Sbjct: 260 ARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGV 319
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+P++ T I++ ++ + GL E+A LF+EM P + T+ ++ A
Sbjct: 320 TPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCS------------PTVVTYTALIHA 367
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
K+ ++ RM+ G N + ++ +AG +
Sbjct: 368 YLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNI 409
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 83/197 (42%), Gaps = 5/197 (2%)
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
A L A +RR A LK G +PS TY +++V+ + G+ +L + +++ +S
Sbjct: 10 ATLRASLRRTCSHAAGDSEDPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSES 69
Query: 122 -YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ + + L +EG+ +A+ + ER L + L A +EA
Sbjct: 70 GFCMDRFTVGCFAHALCKEGRWADALDMI---EREDFKLDTVLCTHMISGLMEASYFDEA 126
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCSPNLVTCNIMVKA 239
+ + ++ + P VV+Y L+ L + I N M C+PN N +V +
Sbjct: 127 MSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHS 186
Query: 240 YLEHGLFEEAMKLFQEM 256
Y + A KL M
Sbjct: 187 YCNEKDYAYAYKLLNRM 203
>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
Length = 577
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 133/291 (45%), Gaps = 18/291 (6%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL--- 110
EP+ V+Y V+N +R E +L+ ++Q KP TY +V++ + C NL
Sbjct: 165 EPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDAL--CKDINLDAA 222
Query: 111 VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ QK+ PN Y L++ L + G+ ++ + + +M I + + L
Sbjct: 223 INLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDG 282
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPN 229
LC GK E+A M + + +P +++Y+ ++ G + A +FN +++ PN
Sbjct: 283 LCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPN 342
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+ + +I++ Y + +AM+LF E+++ KGL PD T++T+L
Sbjct: 343 IFSYSILINGYCKKKNLAKAMQLFGEISQ-----------KGLK-PDTVTYSTILHGLIE 390
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
R D + ++ ML G + H ++ + G VE + + L R
Sbjct: 391 VGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLER 441
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/333 (21%), Positives = 144/333 (43%), Gaps = 29/333 (8%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + P+I YN++++ + QWE +L ++ P+ T+ ++++ + G
Sbjct: 228 EMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEG 287
Query: 107 KYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K E R ++K P+ + Y +++ G+ D A + +GI + Y
Sbjct: 288 KVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYS 347
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
L C +A+ +I + KP V+Y+ ++ ++ G I +A IF++M
Sbjct: 348 ILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRV 407
Query: 226 C-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA---EDSNHINREYDKKGL--------- 272
+P++ + ++ Y ++GL EEAM LF ++ ED+N GL
Sbjct: 408 GPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREA 467
Query: 273 -----------VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILD 321
+IPD+ T+N M+ E +D+++ + ++M +G N + ++
Sbjct: 468 HAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQG 527
Query: 322 ASRAGKV-ELLEITWEHLARA---DRITPPALI 350
R+ K+ E++ E R D T LI
Sbjct: 528 FFRSNKISEIVSFMKEMAGRGFSFDATTTGVLI 560
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 106/258 (41%), Gaps = 23/258 (8%)
Query: 5 PDTVAYRSIA---VTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
PD + Y +I GQ + +F+V+ D ++P+I Y+
Sbjct: 306 PDIITYSAIMDGYCLRGQVDRARRVFNVL------------------RDKGIKPNIFSYS 347
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK- 120
++N ++K A + ++ Q+G KP TY ++ ++ G+ + F ++ +
Sbjct: 348 ILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRV 407
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
P+ + L+ ++ G +EA+ +ER + + Y + LC + EA
Sbjct: 408 GPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREA 467
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKA 239
+K+ + P V +Y +I G I +M+ N C N +T N++++
Sbjct: 468 HAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQG 527
Query: 240 YLEHGLFEEAMKLFQEMA 257
+ E + +EMA
Sbjct: 528 FFRSNKISEIVSFMKEMA 545
>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 580
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 126/276 (45%), Gaps = 30/276 (10%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY-- 112
P+IV YN ++ + A + ++++ G P TYG +++ + G N+
Sbjct: 137 PNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKL 196
Query: 113 --EFFRKVQKSYI---PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL---- 163
E + + I PN + Y ++V+ L + G+ DEA E+M+ +G++ + L
Sbjct: 197 HQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGL 256
Query: 164 ------YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217
+ L LC GK EA + + + P +V+Y LI+ G++ +A
Sbjct: 257 QPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARE 316
Query: 218 IFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
+F M + C P++++ N+++ Y + EEAMKL+ EM P+
Sbjct: 317 LFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKR------------PN 364
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
+ T++++L + DD + ++ M HG+ N+
Sbjct: 365 VITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENS 400
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 141/320 (44%), Gaps = 40/320 (12%)
Query: 5 PDTVAYRSIA---VTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
PD V Y S+ +G +ELF S+P K EPD++ YN
Sbjct: 293 PDLVTYNSLIEGFCMVGDLNSARELF------VSMPSKG------------CEPDVISYN 334
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
++N + + E A + ++ G++P+ TY +++ + GK + + F ++
Sbjct: 335 VLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAH 394
Query: 122 YIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
I N+ Y + ++ L + EA+ +++ L LC AGK E A
Sbjct: 395 GIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETA 454
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKA 239
+K+ ++P VV+YT +I G + A + +M+ N C+P+++T N +++
Sbjct: 455 WELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRG 514
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD-LEL 298
+ E EE ++L MA+ V PD T + ++D + ++++ + L L
Sbjct: 515 FYESNKLEEVVQLLHRMAQKD------------VSPDAITCSIVVDMLSKDEKYQECLHL 562
Query: 299 VYKRMLHHGLHFNAKRHLRM 318
+ + + G+ +HL M
Sbjct: 563 LPRFPIQKGV----DKHLLM 578
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 110/241 (45%), Gaps = 10/241 (4%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP-NALAYKVLVN 134
A + + PS +++ ++ + Y+ V+ + +++ S + + +L+N
Sbjct: 53 ALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLN 112
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194
L + E +A + RRG + Y L + LC + EA ++ K+ P
Sbjct: 113 CLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTP 172
Query: 195 LVVSYTGLIQACLDSGNIQNAAYIFNQMKN-------FCSPNLVTCNIMVKAYLEHGLFE 247
VV+Y LI+ +GNI A + +M N C PN++T NI+V + G +
Sbjct: 173 DVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGRED 232
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
EA +LF+EM + I E +GL PD+ TFN ++D E + + + + M+ G
Sbjct: 233 EAKQLFEEM-KTQGMIPNEMLDQGLQ-PDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESG 290
Query: 308 L 308
+
Sbjct: 291 I 291
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/339 (22%), Positives = 138/339 (40%), Gaps = 60/339 (17%)
Query: 5 PDTVAYRSIAVTLGQAG---HIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
P+ + Y I L + G K+LF+ + + +P E D L+PD+V +N
Sbjct: 213 PNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPN--------EMLDQGLQPDMVTFN 264
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QK 120
+++ + + A +L + + G P TY ++E G N E F + K
Sbjct: 265 VLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSK 324
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
P+ ++Y VL+N + K +EA+ +M G + Y L + + AGK ++A
Sbjct: 325 GCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDA 384
Query: 181 -----LMQ--------------MDKICK---------------VANKPLVV-SYTGLIQA 205
+M+ +D +CK +N L + + LI
Sbjct: 385 KKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDG 444
Query: 206 CLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
+G ++ A +F ++ N PN+VT IM+ + G ++A L Q+M +
Sbjct: 445 LCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANG---- 500
Query: 265 REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
PDI T+NT++ + +++ + RM
Sbjct: 501 --------CTPDIITYNTLMRGFYESNKLEEVVQLLHRM 531
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 77/379 (20%), Positives = 146/379 (38%), Gaps = 84/379 (22%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ L G+I + M + + R++ +P+++ YN ++
Sbjct: 172 PDVVTYGTLIKGLCGTGNINIALKLHQEMLN---------DISRYEINCKPNVITYNIIV 222
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + + + A + +++K QG P+ + + P
Sbjct: 223 DGLCKVGREDEAKQLFEEMKTQGMIPN------------------------EMLDQGLQP 258
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG--------- 175
+ + + VL++TL +EGK EA + M GIV Y L C G
Sbjct: 259 DMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELF 318
Query: 176 --------------------------KCEEALMQMDKICKVANKPLVVSYTGLIQACLDS 209
K EEA+ +++ V +P V++Y L++ +
Sbjct: 319 VSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLA 378
Query: 210 GNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD 268
G + +A +F+ MK + + N T I + ++ EAMKLF E+ + +
Sbjct: 379 GKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKL----- 433
Query: 269 KKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
+I N ++D C A K EL ++++ + G N + MI R G+
Sbjct: 434 -------EIENLNCLIDGLCKAGKLETAWEL-FEKLSNEGHEPNVVTYTIMIHGFCREGQ 485
Query: 328 VELLEITWEHLARADRITP 346
V+ + + + A+ TP
Sbjct: 486 VDKANVLIQKM-EANGCTP 503
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 116/281 (41%), Gaps = 28/281 (9%)
Query: 114 FFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
FF + +S P+ ++ L++ L + + S M G+ L CLC
Sbjct: 56 FFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLC 115
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLV 231
+ + E I + P +V+Y LI+ I A +F +M+ C+P++V
Sbjct: 116 NVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVV 175
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR-EYDKKGLVIPDIYTFNTMLDACAAE 290
T ++K G A+KL QEM D I+R E + K P++ T+N ++D
Sbjct: 176 TYGTLIKGLCGTGNINIALKLHQEMLND---ISRYEINCK----PNVITYNIIVDGLCKV 228
Query: 291 KRWDDLELVYK----------RMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWE 336
R D+ + +++ ML GL + +I + GKV +LL + E
Sbjct: 229 GREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIE 288
Query: 337 HLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSG 377
D +T +LI E FC D SA VS P G
Sbjct: 289 SGIVPDLVTYNSLI-EGFCMV---GDLNSARELFVSMPSKG 325
>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
Length = 1283
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 92/395 (23%), Positives = 162/395 (41%), Gaps = 43/395 (10%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD + YN +++AC + + A V +++ +P TY ++ V CGK
Sbjct: 129 LRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAE 188
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F++ V+K + P+A+ Y L+ +EG + E++ + G Y +
Sbjct: 189 LMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMY 248
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
G+ + AL D++ + P V+YT L+ + I A + +M + P L
Sbjct: 249 GKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTL 308
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT + ++ AY + G ++A + F M E V PD + MLD A
Sbjct: 309 VTFSALICAYAKSGRQDDAERTFDRMVESG------------VKPDRLAYLVMLDVFARS 356
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRA---------GKVELLEITWEH---- 337
L ++Y+ M+ G + L +L A+ A G ++ +E +E
Sbjct: 357 DETRKLMVLYRAMIKDG--YKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPLV 414
Query: 338 ----LARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPE--FSRNAWLKFFK 391
L +A+ I+ A + +R C + D S +S L ++ G E S W++
Sbjct: 415 ISSILIKAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLSLLEWIRQHV 474
Query: 392 ENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQN 426
NS + L+ E S L +NG +Q
Sbjct: 475 PNSHN--------LISECSIMLLCKNGKIVDAIQE 501
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 20/246 (8%)
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI----VGSAALYYDLARCLCSAGKC 177
++P + ++ R G+ D+A ++ M + I V L A+ C A
Sbjct: 57 HLPTVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGV 116
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIM 236
AL + ++ + +P ++Y LI AC N+ +A +F +M + C P+L T N M
Sbjct: 117 --ALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAM 174
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
V + G +EA +F+E+ E KG PD T+N++L A A E + +
Sbjct: 175 VSVHGRCGKAQEAELMFKELVE-----------KGFQ-PDAVTYNSLLYAFAKEGDVERV 222
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCN 356
E V + ++ G + + MI + G+++L ++ + RA TP A+ +
Sbjct: 223 ERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEM-RAIGCTPDAVTYTVLVD 281
Query: 357 RLENKD 362
L D
Sbjct: 282 SLGKMD 287
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 123/290 (42%), Gaps = 26/290 (8%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME--VMLAC--GK-Y 108
EPD ++L+A + + E +L+ ++Q ++ L+ E +ML C GK
Sbjct: 441 EPDGKSLLSILDAYEKMGKHEKGLSLLEWIRQH----VPNSHNLISECSIMLLCKNGKIV 496
Query: 109 NLVYEFFRKV---QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ + E+ RK + S+ + Y+ L+ L EA DM+ GIV S +Y
Sbjct: 497 DAIQEYSRKQMLKRGSFGQDCDLYEYLITYLEEAELFPEACQVFCDMQFLGIVPSQKIYQ 556
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVS-YTGLIQACLDSGNIQNAAYIFNQMKN 224
+ C G E A MD + ++S +I+A Q A +K
Sbjct: 557 SIIYTCCRLGFPETAYQLMDDAARSDISLNILSCRVAMIEAYGKLKLWQQAENFVKGLKQ 616
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
+ N ++ AY E GL+E A +F M KKG +P + + N M+
Sbjct: 617 ESGVDRRIWNALIHAYAESGLYEHARAIFDIMI-----------KKG-PLPTVESVNGMM 664
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEI 333
A + R D+L +V + + + + L M+ ++AG V E+++I
Sbjct: 665 RALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKI 714
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + +LG+ I E V++ M D L+P +V ++A++
Sbjct: 271 PDAVTYTVLVDSLGKMDRISEAGKVLEEMA---------------DAGLKPTLVTFSALI 315
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
A + + + A ++ + G KP Y ++++V + + +R ++ Y
Sbjct: 316 CAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYK 375
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDME 153
P+ Y+VL+ L + + DE ++DME
Sbjct: 376 PDDGLYQVLLAALAKGNEHDEIEGVIQDME 405
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 101/248 (40%), Gaps = 24/248 (9%)
Query: 22 HIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQ 81
H + +FD++ K G L P + N ++ A + + + + V+Q
Sbjct: 640 HARAIFDIM----------IKKGPL--------PTVESVNGMMRALIVDGRLDELYVVVQ 681
Query: 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREG 140
+L+ K S +T L++E G V + + ++ + Y+PN Y+++++ L
Sbjct: 682 ELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNK 741
Query: 141 KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYT 200
+ + V +ME G + L G + + I + +P +Y
Sbjct: 742 RFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYN 801
Query: 201 GLIQACLDSGNI---QNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
LI + S N + ++ K +P L + I++ A + L+E+A LF+EM
Sbjct: 802 TLI--VMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMR 859
Query: 258 EDSNHINR 265
+NR
Sbjct: 860 TKGYRLNR 867
>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g64583, mitochondrial; Flags: Precursor
gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
Length = 512
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 138/297 (46%), Gaps = 17/297 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF- 114
D+ + +++ R + A VL ++ + G +PS T+G ++ + +
Sbjct: 105 DLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLV 164
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
V+ Y PN + Y L++ L + G+ + A+ + +ME++G+ Y L LC +
Sbjct: 165 ILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYS 224
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTC 233
G+ +A + + K + P VV++T LI + GN+ A ++ +M ++ PN VT
Sbjct: 225 GRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTY 284
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N ++ HG +A K F MA KG P++ T+NT++ +
Sbjct: 285 NSIINGLCMHGRLYDAKKTFDLMA-----------SKG-CFPNVVTYNTLISGFCKFRMV 332
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL-LEITWEHLARADRITPPAL 349
D+ +++RM G + + + +I + GK+ + L+I ++R R+TP +
Sbjct: 333 DEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSR--RVTPDII 387
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/325 (21%), Positives = 133/325 (40%), Gaps = 31/325 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L + G + ++++ M K G L D+V YN +L
Sbjct: 174 PNVVVYNTLIDGLCKNGELNIALELLNEME-------KKG--------LGADVVTYNTLL 218
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+W A +L+ + ++ P T+ +++V + G + E +++ +Q S
Sbjct: 219 TGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVD 278
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y ++N L G+ +A + M +G + Y L C +E +
Sbjct: 279 PNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKL 338
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + +Y LI G ++ A IF M +P+++T I++
Sbjct: 339 FQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCV 398
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYK 301
+G E A+ F +M E +I I +N M+ C A+K EL +
Sbjct: 399 NGEIESALVKFDDMRESEKYIG------------IVAYNIMIHGLCKADKVEKAWEL-FC 445
Query: 302 RMLHHGLHFNAKRHLRMILDASRAG 326
R+ G+ +A+ + MIL + G
Sbjct: 446 RLPVEGVKPDARTYTIMILGLCKNG 470
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/346 (21%), Positives = 137/346 (39%), Gaps = 29/346 (8%)
Query: 8 VAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNAC 67
+ Y VT G H L + I SL K+G EP++VVYN +++
Sbjct: 135 LGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSG--------YEPNVVVYNTLIDGL 186
Query: 68 VRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNA 126
+ + A +L +++++G TY ++ + G+++ R + K I P+
Sbjct: 187 CKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDV 246
Query: 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK 186
+ + L++ ++G DEA ++M + + + Y + LC G+ +A D
Sbjct: 247 VTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDL 306
Query: 187 ICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHG 244
+ P VV+Y LI + +F +M + F + ++ T N ++ Y + G
Sbjct: 307 MASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGF-NADIFTYNTLIHGYCQVG 365
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
A+ +F M ++R V PDI T +L + + + M
Sbjct: 366 KLRVALDIFCWM------VSRR------VTPDIITHCILLHGLCVNGEIESALVKFDDMR 413
Query: 305 HHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR--ADRITPPA 348
+ + MI +A KVE WE R + + P A
Sbjct: 414 ESEKYIGIVAYNIMIHGLCKADKVEK---AWELFCRLPVEGVKPDA 456
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 18/221 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y SI L G + + D M S K F P++V YN ++
Sbjct: 279 PNNVTYNSIINGLCMHGRLYDAKKTFDLMAS--KGCF-------------PNVVTYNTLI 323
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKSYI 123
+ + + + + Q++ +G TY ++ GK + + F V +
Sbjct: 324 SGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVT 383
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDM-ERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ + + +L++ L G+ + A+ +DM E +G A Y + LC A K E+A
Sbjct: 384 PDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVA-YNIMIHGLCKADKVEKAWE 442
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
++ KP +YT +I +G + A + +MK
Sbjct: 443 LFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMK 483
>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
Length = 1114
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 134/315 (42%), Gaps = 31/315 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + G++G I ELF++ M + EP+ + +N V+
Sbjct: 820 PDVATYNFLLDAYGKSGKIDELFEIYKEMSA---------------HECEPNTITHNIVI 864
Query: 65 NACVRRKQWEGAFWVLQQL-KQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SY 122
+ V+ + A + L + P+A TYG +++ + G+ + F +
Sbjct: 865 SGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGC 924
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN Y +L+N + G+ D A + + M + G+ Y L CLC G+ +E L
Sbjct: 925 RPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLH 984
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF--CSPNLVTCNIMVKAY 240
++ + P VV Y +I ++ A +FN+MK +P+L T N ++
Sbjct: 985 YFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNL 1044
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
G+ EEA K++ E+ + GL P+++TFN ++ + + + VY
Sbjct: 1045 GIAGMVEEAGKIYNEI-----------QRAGLE-PNVFTFNALIRGYSLSGKPEHAYAVY 1092
Query: 301 KRMLHHGLHFNAKRH 315
+ M+ G N +
Sbjct: 1093 QTMVTGGFSPNTGTY 1107
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 76/362 (20%), Positives = 146/362 (40%), Gaps = 64/362 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + LG+AG I E ++++ M D PD+V Y ++
Sbjct: 258 PNVYTFTICIRVLGRAGKINEAYEILKRMD---------------DEGCGPDVVTYTVLI 302
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+A ++ + A V ++K KP TY +++ + V +F+ +++K ++
Sbjct: 303 DALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHV 362
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + +LV+ L + G EA + ++ M +GI+ + Y L L + ++AL
Sbjct: 363 PDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEI 422
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTC--------- 233
D + + KP +Y I SG+ +A F +MK +PN+V C
Sbjct: 423 FDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAK 482
Query: 234 --------------------------NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
N+M+K Y + G +EA+KL EM E+
Sbjct: 483 AGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCE----- 537
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
PD+ N++++ R D+ ++ RM L + ++ + GK
Sbjct: 538 -------PDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGK 590
Query: 328 VE 329
++
Sbjct: 591 IQ 592
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 110/249 (44%), Gaps = 16/249 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ VA + +L +AG +E + ++ D L PD V YN ++
Sbjct: 468 PNIVACNASLYSLAKAGRDREAKQIFYGLK---------------DIGLVPDSVTYNMMM 512
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + A +L ++ + +P ++ + + + ++ F ++++ +
Sbjct: 513 KCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLK 572
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y L+ L + GK EA+ E M ++G + + L CLC + AL
Sbjct: 573 PTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKM 632
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
+ K+ + P V +Y +I + +G ++ A F+QMK P+ VT ++ ++
Sbjct: 633 LFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKA 692
Query: 244 GLFEEAMKL 252
GL E+A K+
Sbjct: 693 GLIEDAYKI 701
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/299 (20%), Positives = 121/299 (40%), Gaps = 48/299 (16%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D ++P + YN ++ + E A V Q+K G P TY +++ GK +
Sbjct: 780 DLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKID 839
Query: 110 LVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
++E ++++ PN + + ++++ L + G D+A+ LYYDL
Sbjct: 840 ELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALD---------------LYYDL- 883
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CS 227
+ P +Y LI SG + A +F M ++ C
Sbjct: 884 ------------------MSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCR 925
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
PN NI++ + + G + A LF+ M ++ V PD+ T++ ++D
Sbjct: 926 PNCAIYNILINGFGKAGEADAACALFKRMVKEG------------VRPDLKTYSVLVDCL 973
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
R D+ ++ + GL+ + + +I + ++E + + + ++ ITP
Sbjct: 974 CMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITP 1032
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/357 (20%), Positives = 148/357 (41%), Gaps = 41/357 (11%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P V Y ++ LG+ G I+E ++ + M +++ P P+ + +
Sbjct: 569 MKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGM------------VQKGCP---PNTITF 613
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N + + + + A +L ++ G P TY ++ ++ G+ FF +++K
Sbjct: 614 NTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKK 673
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY-DLARCLCSAGKCEE 179
P+ + L+ + + G ++A + + A L++ DL + + +
Sbjct: 674 LVYPDFVTLCTLLPGVVKAGLIEDAYKIIANFLYSCADQPANLFWEDLMGSILAEAGIDN 733
Query: 180 AL-----MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--FCSPNLVT 232
A+ + + IC+ + LV +I+ N A +F + P L T
Sbjct: 734 AVSFSERLVANGICRDGDSILV----PIIRYSFKHNNASGARMLFEKFTKDLGVQPKLPT 789
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N+++ LE + E A +F ++ K IPD+ T+N +LDA +
Sbjct: 790 YNLLIGGLLEADMIEIAQDVFLQV------------KNTGCIPDVATYNFLLDAYGKSGK 837
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARADRITPPA 348
D+L +YK M H N H +I +AG V + L++ ++ ++ D +P A
Sbjct: 838 IDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRD-FSPTA 893
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 127/285 (44%), Gaps = 22/285 (7%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK---YNLVYEFFR 116
YN +++ ++ + A V +++ G +PS TY +M+ GK V +
Sbjct: 193 YNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYS---SLMVGLGKRRDIESVMGLLK 249
Query: 117 KVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
+++ + PN + + + L R GK +EA ++ M+ G Y L LC+A
Sbjct: 250 EMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTAR 309
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCN 234
K + A K+ +KP V+Y L+ D+ ++ + +++M K+ P++VT
Sbjct: 310 KLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFT 369
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
I+V A + G F EA M + ++P+++T+NT++ R D
Sbjct: 370 ILVDALCKAGNFGEAFAKLDVMRDQG------------ILPNLHTYNTLICGLLRVHRLD 417
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMILDASRAG-KVELLEITWEHL 338
D ++ M G+ A ++ I ++G V LE T+E +
Sbjct: 418 DALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALE-TFEKM 461
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/360 (20%), Positives = 141/360 (39%), Gaps = 57/360 (15%)
Query: 36 LPKKKFKTGTLERWDPRL----EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPS 91
L K +F T +E + + P + Y++++ +R+ E +L++++ G KP+
Sbjct: 200 LLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPN 259
Query: 92 ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAV- 149
T+ + + V+ GK N YE +++ P+ + Y VL++ L K D A
Sbjct: 260 VYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFA 319
Query: 150 ----------------------------------EDMERRGIVGSAALYYDLARCLCSAG 175
+ME+ G V + L LC AG
Sbjct: 320 KMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAG 379
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCN 234
EA ++D + P + +Y LI L + +A IF+ M++ P T
Sbjct: 380 NFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYI 439
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
+ + Y + G A++ F++M K + P+I N L + A R
Sbjct: 440 VFIDYYGKSGDSVSALETFEKM------------KTKGIAPNIVACNASLYSLAKAGRDR 487
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLEITWEHLARADRITPPALI 350
+ + ++ + GL ++ + M+ S+ G+++ LL E+ D I +LI
Sbjct: 488 EAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLI 547
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 97/215 (45%), Gaps = 15/215 (6%)
Query: 78 WVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTL 136
+ L+++++ G +A +Y ++ ++L E +R+ + + P+ Y L+ L
Sbjct: 176 FALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGL 235
Query: 137 WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV 196
+ + + +++ME G+ + + R L AGK EA + ++ P V
Sbjct: 236 GKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDV 295
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
V+YT LI A + + A +F +MK P+ VT ++ + ++ + + + E
Sbjct: 296 VTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSE 355
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAA 289
M +D + +PD+ TF ++DA C A
Sbjct: 356 MEKDGH------------VPDVVTFTILVDALCKA 378
Score = 41.6 bits (96), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ-QGQKPSATTYGLVMEVMLAC 105
E + L PD+V YN ++N + + E A + ++K+ +G P TY ++ +
Sbjct: 988 ELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIA 1047
Query: 106 GKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G + + ++Q++ + PN + L+ GK + A + + M G + Y
Sbjct: 1048 GMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTY 1107
Query: 165 YDL 167
L
Sbjct: 1108 EQL 1110
>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Glycine max]
Length = 742
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/351 (20%), Positives = 146/351 (41%), Gaps = 40/351 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD V Y ++ G++G++ + + D M+ ++ PD V Y ++
Sbjct: 354 FPDNVVYTTLISGFGKSGNVSVEYKLFDEMKR---------------KKIVPDFVTYTSM 398
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSY 122
++ + + A + ++ +G KP TY +++ G+ + + V+K
Sbjct: 399 IHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGL 458
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN + Y LV+ L + G+ D A + +M +G+ + Y L LC G E+A+
Sbjct: 459 TPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVK 518
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
M+++ P ++YT ++ A G + A + M P +VT N+++ +
Sbjct: 519 LMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFC 578
Query: 242 EHGLFEEAMKLFQEM--------AEDSNHINREY-----------DKKGL----VIPDIY 278
G+ E+ +L + M A N + ++Y KG+ V+PD
Sbjct: 579 MSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTN 638
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
T+N ++ + + ++K M+ G A + +I + K E
Sbjct: 639 TYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFE 689
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 130/283 (45%), Gaps = 29/283 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+TV+Y I L Q G +KE ++ M +F+ PD+V Y+ +++
Sbjct: 251 NTVSYNIILHLLCQLGKVKEAHSLLIQM------EFRGNV---------PDVVSYSVIVD 295
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ +Q ++++L+++G KP+ TY ++ + G+ + R ++ I P
Sbjct: 296 GYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFP 355
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ + Y L++ + G ++M+R+ IV Y + LC AGK EA
Sbjct: 356 DNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLF 415
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
++ KP V+YT LI +G ++ A + NQM + +PN+VT +V +
Sbjct: 416 SEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKC 475
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
G + A +L EM+E KGL P++ T+N +++
Sbjct: 476 GEVDIANELLHEMSE-----------KGLQ-PNVCTYNALING 506
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/312 (19%), Positives = 108/312 (34%), Gaps = 59/312 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTL------ 46
PD V Y ++ +AG +KE F + + M +L K G +
Sbjct: 425 PDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANEL 484
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E + L+P++ YNA++N + E A +++++ G P TY +M+
Sbjct: 485 LHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCK 544
Query: 105 CGKYNLVYEFFR------------------------------------KVQKSYIPNALA 128
G+ +E R + K +PNA
Sbjct: 545 MGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATT 604
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
+ L+ + + M +G+V Y L + C A +EA ++
Sbjct: 605 FNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMV 664
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK--NFCSPNLVTCNIMVKAYLEHGLF 246
+ SY LI+ + A +F +M+ F + + +I V E G +
Sbjct: 665 EKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIY-DIFVDVNYEEGNW 723
Query: 247 EEAMKLFQEMAE 258
E ++L E E
Sbjct: 724 ENTLELCDEAIE 735
>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 831
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 134/294 (45%), Gaps = 14/294 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PD + YN ++NA + Q A +L +++ P+ TY ++++ + G + +
Sbjct: 436 IKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAF 495
Query: 113 EFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E R ++ + + P+A Y V+++ L + G+ D A S +++M G+ + Y L
Sbjct: 496 ETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGY 555
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NL 230
G A ++I +V KP V++Y L++AC +G +Q+ I +M P N
Sbjct: 556 ACIGDMGLAFKYFNRIKEVGLKPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNN 615
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
NI++ + + G EA + Q+M + + PDI+++ + ++AC
Sbjct: 616 YIYNILLDGWAQRGDMWEASDIMQKMRHEG------------LTPDIHSYTSFINACCKA 663
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI 344
++M G+ N + + +I + A E I ++ + A I
Sbjct: 664 GDMLKATETIEQMKQQGVQPNLQAYTTLIHGWASASYPEKALICYDEMKSAGMI 717
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/320 (19%), Positives = 130/320 (40%), Gaps = 32/320 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y I G+ G ++ ++ F+ E W + V+YN ++
Sbjct: 260 PNAATYSVIISGYGRLGDVE-----------AAERWFQRALSENW----HHNDVIYNNII 304
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV----QK 120
+A + E A ++ +++QG + + Y ++M+ + C + FR++ +
Sbjct: 305 HAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCLNVFRRLKARTET 364
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
P ++Y L+N + GK D+A+ +ME +GI + Y + G A
Sbjct: 365 GLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANA 424
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
+ + KP ++Y L+ A +G + A + +M++ C P L T I++
Sbjct: 425 FSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDG 484
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+++ G A + ++M K P T+N ++ A + D +
Sbjct: 485 FMKIGDLRMAFETVRDM------------KMAGFRPSAATYNVIMHGLAQAGQMDRAASI 532
Query: 300 YKRMLHHGLHFNAKRHLRMI 319
M+ G+H N + + +I
Sbjct: 533 IDEMVVAGVHPNERSYTTLI 552
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 124/289 (42%), Gaps = 36/289 (12%)
Query: 22 HIKELFDVIDSMRSLPKKKFKTGTL------ERWDPR-------------LEPDIVVYNA 62
H K+ V+D+ + + K K + TL +R D +EP++ Y
Sbjct: 173 HPKDARKVVDAFKRIKKPKQRDHTLLVNYYGKRGDKHSARAAFESMRAAGIEPNVHSYTN 232
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKS 121
+++A + GA +++++ +G P+A TY +++ G +F R + ++
Sbjct: 233 LIHAYAVAQDLRGAIACVEEMEAEGVSPNAATYSVIISGYGRLGDVEAAERWFQRALSEN 292
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL--ARCLCSA-GKCE 178
+ N + Y +++ + G + A + + ME +G+ + LY L C A KC
Sbjct: 293 WHHNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCL 352
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMV 237
++ + P VVSY LI G + A I N+M++ N T ++++
Sbjct: 353 NVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMII 412
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
Y++ G A +F++M+ + PD T+N +++A
Sbjct: 413 DGYVQLGDTANAFSVFEDMSNAG------------IKPDGITYNILMNA 449
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 87/215 (40%), Gaps = 24/215 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSL---PKKKFKTGTLERW------------ 49
P Y I L QAG + +ID M P ++ T +E +
Sbjct: 508 PSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKY 567
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ L+PD++ Y ++L AC + + + + ++ G + Y ++++
Sbjct: 568 FNRIKEVGLKPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQ 627
Query: 105 CGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + +K++ + P+ +Y +N + G +A +E M+++G+ +
Sbjct: 628 RGDMWEASDIMQKMRHEGLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQA 687
Query: 164 YYDLARCLCSAGKCEEALM---QMDKICKVANKPL 195
Y L SA E+AL+ +M + +KPL
Sbjct: 688 YTTLIHGWASASYPEKALICYDEMKSAGMIPDKPL 722
Score = 38.1 bits (87), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 33/172 (19%), Positives = 69/172 (40%), Gaps = 20/172 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS--LPKKKFKTGTLERWDPRLEPDIVVYNA 62
PD +AY S+ +AG ++ + M + +P + +YN
Sbjct: 578 PDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNY-----------------IYNI 620
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKS 121
+L+ +R A ++Q+++ +G P +Y + G E ++ Q+
Sbjct: 621 LLDGWAQRGDMWEASDIMQKMRHEGLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQG 680
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
PN AY L++ ++A+ ++M+ G++ LY+ + L S
Sbjct: 681 VQPNLQAYTTLIHGWASASYPEKALICYDEMKSAGMIPDKPLYHCIMTSLLS 732
>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
Length = 440
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 138/323 (42%), Gaps = 33/323 (10%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ + YNA+L+ + A + +++ + G P TY ++ G+ + +
Sbjct: 8 PNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKI 67
Query: 115 FR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F V++ ++P+ + Y L+N + K DEA ++ M +V Y L LC
Sbjct: 68 FDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCK 127
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQ-MKNFCSPNLV 231
G+ +EA M I P V++Y+ LI C + + A +F +K P +
Sbjct: 128 NGRVDEARML---IVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVP 184
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMA------------------------EDSNHINREY 267
T NI++ L+ EA +LF + ED+ + ++
Sbjct: 185 TYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDM 244
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
D+KG V PD+ + N +++ EKR D+ E++ M G NA +I RAGK
Sbjct: 245 DEKGCV-PDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGK 303
Query: 328 VELLEITWEHLARADRITPPALI 350
+ T++ + + R P ++
Sbjct: 304 WKKAMTTFKEMLK--RGVKPTVV 324
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 128/260 (49%), Gaps = 19/260 (7%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP++ YN +++ ++ + AF + L + G +P A TY + ++ + G+
Sbjct: 180 EPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALL 239
Query: 114 FFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ + +K +P+ +++ ++N L +E + DEA + ME +G +A + L C
Sbjct: 240 MLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQC 299
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS---GNIQNAAYIFNQM-KNFCSP 228
AGK ++A+ ++ K KP VV+Y L+ + G I+ A +F+ M + P
Sbjct: 300 RAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVP 359
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-C 287
++VT + ++ + G ++A +L M + KG IP++YT+N+++ C
Sbjct: 360 DVVTYSALIDGLGKAGKLDDARRLLGAM-----------EAKG-CIPNVYTYNSLISGLC 407
Query: 288 AAEKRWDDLELVYKRMLHHG 307
EK + LEL + M+ G
Sbjct: 408 GLEKVDEALEL-FVAMVEKG 426
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/363 (21%), Positives = 148/363 (40%), Gaps = 65/363 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ + G + E + D G ++R PD+V YNA++
Sbjct: 43 PDVVTYNTLLHGFCKVGELDEALKIFD------------GAVKRG---FVPDVVTYNALI 87
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN--------------- 109
N + + + A +LQ++ + P TY ++ + G+ +
Sbjct: 88 NGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNV 147
Query: 110 LVYE-------------------FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVE 150
+ Y F +++ Y P Y +L++ L +E + +EA
Sbjct: 148 ITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFS 207
Query: 151 DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG 210
+ + G+ A Y LC AG+ E+AL+ + + + P VVS+ +I
Sbjct: 208 GLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEK 267
Query: 211 NIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
+ A + + M+ CSPN ++ N ++ G +++AM F+EM K
Sbjct: 268 RVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEML-----------K 316
Query: 270 KGLVIPDIYTFNTMLDA-CAA--EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+G V P + T+N ++D C A E R + ++ M+ G + + +I +AG
Sbjct: 317 RG-VKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAG 375
Query: 327 KVE 329
K++
Sbjct: 376 KLD 378
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 111/239 (46%), Gaps = 17/239 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
LEPD + Y ++ + + E A +L+ + ++G P ++ V+ + + +
Sbjct: 214 LEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAE 273
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++ K PNA+++ L+ R GK +A++ ++M +RG+ + Y L L
Sbjct: 274 VLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGL 333
Query: 172 CSA---GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCS 227
C A G+ +EA+ D + + P VV+Y+ LI +G + +A + M+ C
Sbjct: 334 CKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCI 393
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
PN+ T N ++ +EA++LF M E KG V PD T+ T++ A
Sbjct: 394 PNVYTYNSLISGLCGLEKVDEALELFVAMVE-----------KGCV-PDTITYGTIISA 440
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 114/249 (45%), Gaps = 16/249 (6%)
Query: 83 LKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREGK 141
+++ G P+ TY ++ + G+ + + R ++ Y P+ + Y L++ + G+
Sbjct: 1 MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60
Query: 142 TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
DEA+ + +RG V Y L C A K +EA + ++ P VV+Y
Sbjct: 61 LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120
Query: 202 LIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL-EHGLFEEAMKLFQEMAEDS 260
L+ +G + A + K F SPN++T + ++ E EA+KLF +
Sbjct: 121 LVNGLCKNGRVDEARMLIVD-KGF-SPNVITYSTLISGLCRELRGVSEALKLFGSV---- 174
Query: 261 NHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMIL 320
+ + Y+ P++ T+N ++D E R ++ ++ ++ HGL +A + I
Sbjct: 175 --LKQGYE------PEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFID 226
Query: 321 DASRAGKVE 329
+AG+VE
Sbjct: 227 GLCKAGRVE 235
>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
Length = 615
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 119/281 (42%), Gaps = 36/281 (12%)
Query: 55 PDIVVYNAVLNACVRR--------KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
PD+V YN VLN + + + A VL + + G P TY ++ + G
Sbjct: 199 PDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSG 258
Query: 107 KYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ +K++ + PN + Y L+N L + G++ EA + M +RG+ A Y
Sbjct: 259 QPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYR 318
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
L + C G+ E+ D + ++ KP +++Y LI C +G + A + M +
Sbjct: 319 TLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSV 378
Query: 226 -CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
P++VT ++ Y ++A+ LF+EM V P+I T+N +L
Sbjct: 379 GVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSG------------VSPNIITYNIIL 426
Query: 285 D--------ACAAE------KRWDDLELVYKRMLHHGLHFN 311
A A E K LEL ++ HGL N
Sbjct: 427 QGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKN 467
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/365 (22%), Positives = 142/365 (38%), Gaps = 57/365 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
P+ V Y S+ L + G E + DSM R+L + K G + +
Sbjct: 277 PNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKL 336
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ PDI+ YN +++ C + + A +L + G KP TYG ++
Sbjct: 337 FDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCR 396
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
+ + F+++ S + PN + Y +++ L+ +T A + + G +
Sbjct: 397 VSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELST 456
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQM 222
Y + LC +EAL +C + ++ +I A L G + A +F
Sbjct: 457 YNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHS 516
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
N P++ T ++M + +E G EE LF M E
Sbjct: 517 ANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEE------------------------ 552
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI------LDASRAG-KVELLEITW 335
+ C+A+ R L + +++L G A +L MI L+AS A +E I W
Sbjct: 553 --NGCSADSRM--LNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLLESSPIVW 608
Query: 336 EHLAR 340
E ++R
Sbjct: 609 EQISR 613
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 14/147 (9%)
Query: 145 AVSAVEDMERRG---IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
AVS M R G + + Y L C C AG+ + + + K + +++T
Sbjct: 73 AVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTP 132
Query: 202 LIQA-CLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
L++ C D + +M C P++ + N ++K + +EA++L MA+
Sbjct: 133 LLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMAD- 191
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDA 286
D+ G PD+ ++NT+L+
Sbjct: 192 --------DRGGGSPPDVVSYNTVLNG 210
>gi|159465707|ref|XP_001691064.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
gi|158279750|gb|EDP05510.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
Length = 630
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 127/282 (45%), Gaps = 26/282 (9%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE- 113
P++V YN +++ + +WE A VL +KQ+G +P TY +++AC N E
Sbjct: 136 PNVVTYNTLVDVYGKLGRWERAIHVLDLMKQEGVEPVLRTYN---TLIIACNMCNQPREA 192
Query: 114 ---FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ R + Y PN+ Y L++ + + +A+ ++M R+ + S Y L
Sbjct: 193 LAVYQRLLSDGYTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLISA 252
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
AG+ E AL +++ + P V+Y L+ AC G + A +F QM + C+P+
Sbjct: 253 CEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCTPD 312
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+VT ++ AY G +++A++ F +M PD +N ++D
Sbjct: 313 VVTYTALISAYERGGQWQKALQAFGKMCMQGCK------------PDAIVYNAIIDTL-- 358
Query: 290 EKRWD-DLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
W+ + R L L + H R RAG+VE+
Sbjct: 359 ---WETGIIWAQGRALQLFLTAVQQGHFRQEPVVRRAGRVEV 397
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/313 (21%), Positives = 141/313 (45%), Gaps = 26/313 (8%)
Query: 17 LGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGA 76
LG+ ELFD + S ER R D+ Y A ++ C+ + + A
Sbjct: 40 LGKDRRAMELFDWLRSAN------------ERSPLRQLCDVYSYTATISLCIYSQDVDRA 87
Query: 77 FWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-IPNALAYKVLVNT 135
++ +++Q+ + + T+ +M V + CGK L E + ++ + +PN + Y LV+
Sbjct: 88 MELMNEMRQRNIERNVHTFTALMNVCIKCGKLPLALEIYNNMRAANCMPNVVTYNTLVDV 147
Query: 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL 195
+ G+ + A+ ++ M++ G+ Y L + EAL ++ P
Sbjct: 148 YGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGYTPN 207
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
+Y LI A + + A ++ +M + +++T + ++ A + G +E A+++F
Sbjct: 208 STTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLISACEKAGQWETALRIFN 267
Query: 255 EMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKR 314
EM +D+ +P+ T+N+++ ACA +W+ V+++M HG +
Sbjct: 268 EMQQDN------------CVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCTPDVVT 315
Query: 315 HLRMILDASRAGK 327
+ +I R G+
Sbjct: 316 YTALISAYERGGQ 328
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 109/258 (42%), Gaps = 28/258 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ G+ G + V+D M+ +EP + YN ++
Sbjct: 136 PNVVTYNTLVDVYGKLGRWERAIHVLDLMK---------------QEGVEPVLRTYNTLI 180
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV---MLACGKYNLVY-EFFRK-VQ 119
AC Q A V Q+L G P++TTY ++ + GK VY E R+ ++
Sbjct: 181 IACNMCNQPREALAVYQRLLSDGYTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNME 240
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+S I Y L++ + G+ + A+ +M++ V + Y L G+ E+
Sbjct: 241 RSVI----TYSSLISACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEK 296
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A +++ P VV+YT LI A G Q A F +M C P+ + N ++
Sbjct: 297 ATEVFEQMTAHGCTPDVVTYTALISAYERGGQWQKALQAFGKMCMQGCKPDAIVYNAIID 356
Query: 239 AYLEHGLF---EEAMKLF 253
E G+ A++LF
Sbjct: 357 TLWETGIIWAQGRALQLF 374
>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 754
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 14/254 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L D V Y A++N R + + A VLQ+++ +G A TY ++++ GK +
Sbjct: 386 LAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAF 445
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
K VQK PN + Y L + L ++G A + +M +G+ + Y L L
Sbjct: 446 LVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGL 505
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C AG E+A+ M + + KP V +YT +I A S + A + +M P +
Sbjct: 506 CKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTI 565
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N+++ + G E +L + M E + H P+ T+N+++ E
Sbjct: 566 VTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIH------------PNTTTYNSLMKQYCIE 613
Query: 291 KRWDDLELVYKRML 304
K +YK ML
Sbjct: 614 KNMKSTTEIYKGML 627
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 135/325 (41%), Gaps = 37/325 (11%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPK--------------KKFKTGT--LERW 49
+T +Y + L AG IK+ + D M S P + +T L
Sbjct: 252 NTCSYNILLKALCTAGRIKDAHQLFDEMASPPDVVTYGIMVHGYCTLSELETAIKLLSEM 311
Query: 50 DPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY 108
R LE + V Y +V+ Q A V++ + G A + VM G
Sbjct: 312 AARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDL 371
Query: 109 NLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+F ++QK + + + Y L+N L R G+ EA +++ME +G+ A Y L
Sbjct: 372 AAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVL 431
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227
C GK EA + +K+ + P VV+YT L G++ A + ++M CS
Sbjct: 432 IDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEM---CS 488
Query: 228 P----NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
N+ T N ++ + G E+AM+ +M D+ GL PD+YT+ T+
Sbjct: 489 KGLELNIFTYNSLINGLCKAGNLEQAMRTMIDM-----------DEAGLK-PDVYTYTTI 536
Query: 284 LDACAAEKRWDDLELVYKRMLHHGL 308
+ A K D + + ML G+
Sbjct: 537 IGALCQSKELDRAHSLLQEMLDKGI 561
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 115/285 (40%), Gaps = 31/285 (10%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
E + YN +L A + + A Q + P TYG+++ + +
Sbjct: 250 EKNTCSYNILLKALCTAGRIKDAH---QLFDEMASPPDVVTYGIMVHGYCTLSELETAIK 306
Query: 114 FFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++ + N +AY ++ L EG+ +AV VEDM G+V AA++ + C
Sbjct: 307 LLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFC 366
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLV 231
G A D++ K V+YT LI +G ++ A + +M++ + V
Sbjct: 367 RKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAV 426
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA----- 286
T +++ Y + G EA + +M + V P++ T+ + D
Sbjct: 427 TYTVLIDGYCKVGKMTEAFLVHNKMVQKR------------VTPNVVTYTALSDGLCKQG 474
Query: 287 --CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
CAA EL+++ M GL N + +I +AG +E
Sbjct: 475 DVCAAN------ELLHE-MCSKGLELNIFTYNSLINGLCKAGNLE 512
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 94/240 (39%), Gaps = 21/240 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERW--- 49
P+ V Y +++ L + G + +++ M SL K G LE+
Sbjct: 458 PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRT 517
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ L+PD+ Y ++ A + K+ + A +LQ++ +G KP+ TY ++M
Sbjct: 518 MIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCM 577
Query: 105 CGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ ++K+ PN Y L+ E + M + +V +
Sbjct: 578 SGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENT 637
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L + C A +EAL ++ + + SY LI+ A +F +M+
Sbjct: 638 YNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMR 697
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 16/186 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y +I L Q+ KEL D SL + E D ++P IV YN ++
Sbjct: 528 PDVYTYTTIIGALCQS---KEL----DRAHSLLQ--------EMLDKGIKPTIVTYNVLM 572
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + EG +L+ + ++ P+ TTY +M+ E ++ + + +
Sbjct: 573 NGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVV 632
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y +L+ + EA+ +M +G +A+ Y L R L K EA
Sbjct: 633 PNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRL 692
Query: 184 MDKICK 189
+K+ K
Sbjct: 693 FEKMRK 698
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV 231
C+A C L + ++ + + SY L++A +G I++A +F++M + P++V
Sbjct: 229 CNAVLCRLPLDEAVQLFQELPEKNTCSYNILLKALCTAGRIKDAHQLFDEMAS--PPDVV 286
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T IMV Y E A+KL EMA +N P YT +++ E
Sbjct: 287 TYGIMVHGYCTLSELETAIKLLSEMAARGLELN----------PVAYT--SVIALLCDEG 334
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR----ADRITPP 347
+ D V + M+ HG+ +A ++ R G + ++ + + AD +T
Sbjct: 335 QVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYT 394
Query: 348 ALI 350
ALI
Sbjct: 395 ALI 397
>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
Length = 799
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 14/254 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L D V Y A++N R + + A VLQ+++ +G A TY ++++ GK +
Sbjct: 386 LAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAF 445
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
K VQK PN + Y L + L ++G A + +M +G+ + Y L L
Sbjct: 446 LVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGL 505
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C AG E+A+ M + + KP V +YT +I A S + A + +M P +
Sbjct: 506 CKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTI 565
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N+++ + G E +L + M E + H P+ T+N+++ E
Sbjct: 566 VTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIH------------PNTTTYNSLMKQYCIE 613
Query: 291 KRWDDLELVYKRML 304
K +YK ML
Sbjct: 614 KNMKSTTEIYKGML 627
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 156/376 (41%), Gaps = 42/376 (11%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPK--------------KKFKTGT--LERW 49
+T +Y + L AG IK+ + D M S P + +T L
Sbjct: 252 NTCSYNILLKALCTAGRIKDAHQLFDEMASPPDVVTYGIMVHGYCTLSELETAIKLLSEM 311
Query: 50 DPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY 108
R LE + V Y +V+ Q A V++ + G A + VM G
Sbjct: 312 AARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDL 371
Query: 109 NLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+F ++QK + + + Y L+N L R G+ EA +++ME +G+ A Y L
Sbjct: 372 AAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVL 431
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227
C GK EA + +K+ + P VV+YT L G++ A + ++M CS
Sbjct: 432 IDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEM---CS 488
Query: 228 P----NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
N+ T N ++ + G E+AM+ +M D+ GL PD+YT+ T+
Sbjct: 489 KGLELNIFTYNSLINGLCKAGNLEQAMRTMIDM-----------DEAGLK-PDVYTYTTI 536
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLEITWEHLA 339
+ A K D + + ML G+ + ++ +G+VE LLE E
Sbjct: 537 IGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNI 596
Query: 340 RADRITPPALIKERFC 355
+ T +L+K+ +C
Sbjct: 597 HPNTTTYNSLMKQ-YC 611
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 115/285 (40%), Gaps = 31/285 (10%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
E + YN +L A + + A Q + P TYG+++ + +
Sbjct: 250 EKNTCSYNILLKALCTAGRIKDAH---QLFDEMASPPDVVTYGIMVHGYCTLSELETAIK 306
Query: 114 FFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++ + N +AY ++ L EG+ +AV VEDM G+V AA++ + C
Sbjct: 307 LLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFC 366
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLV 231
G A D++ K V+YT LI +G ++ A + +M++ + V
Sbjct: 367 RKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAV 426
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA----- 286
T +++ Y + G EA + +M + V P++ T+ + D
Sbjct: 427 TYTVLIDGYCKVGKMTEAFLVHNKMVQKR------------VTPNVVTYTALSDGLCKQG 474
Query: 287 --CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
CAA EL+++ M GL N + +I +AG +E
Sbjct: 475 DVCAAN------ELLHE-MCSKGLELNIFTYNSLINGLCKAGNLE 512
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 94/240 (39%), Gaps = 21/240 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERW--- 49
P+ V Y +++ L + G + +++ M SL K G LE+
Sbjct: 458 PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRT 517
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ L+PD+ Y ++ A + K+ + A +LQ++ +G KP+ TY ++M
Sbjct: 518 MIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCM 577
Query: 105 CGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ ++K+ PN Y L+ E + M + +V +
Sbjct: 578 SGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENT 637
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L + C A +EAL ++ + + SY LI+ A +F +M+
Sbjct: 638 YNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMR 697
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 16/186 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y +I L Q+ KEL D SL + E D ++P IV YN ++
Sbjct: 528 PDVYTYTTIIGALCQS---KEL----DRAHSLLQ--------EMLDKGIKPTIVTYNVLM 572
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + EG +L+ + ++ P+ TTY +M+ E ++ + + +
Sbjct: 573 NGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVV 632
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y +L+ + EA+ +M +G +A+ Y L R L K EA
Sbjct: 633 PNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRL 692
Query: 184 MDKICK 189
+K+ K
Sbjct: 693 FEKMRK 698
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV 231
C+A C L + ++ + + SY L++A +G I++A +F++M + P++V
Sbjct: 229 CNAVLCRLPLDEAVQLFQELPEKNTCSYNILLKALCTAGRIKDAHQLFDEMAS--PPDVV 286
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T IMV Y E A+KL EMA +N P YT +++ E
Sbjct: 287 TYGIMVHGYCTLSELETAIKLLSEMAARGLELN----------PVAYT--SVIALLCDEG 334
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR----ADRITPP 347
+ D V + M+ HG+ +A ++ R G + ++ + + AD +T
Sbjct: 335 QVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYT 394
Query: 348 ALI 350
ALI
Sbjct: 395 ALI 397
>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
Length = 552
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/407 (20%), Positives = 162/407 (39%), Gaps = 73/407 (17%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLER--- 48
YPD V Y ++ LG+ +KE +D+ + R ++ K G +E
Sbjct: 27 YPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALT 86
Query: 49 -WDPR-----LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
+D P +V Y+ +++ R + + +L+++ +G P+A TY ++ +
Sbjct: 87 LYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNAL 146
Query: 103 LACGKYNLVYEFFRKVQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDM--------- 152
L G+ + ++ + P L + +++ L +EG+ + A V++M
Sbjct: 147 LGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSP 206
Query: 153 ----------------------------ERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
RG + Y L L K +EAL +
Sbjct: 207 DVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLL 266
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
K+ ++ + V+Y+ ++ L G +++A + QM++ C P+ VT N ++ + +
Sbjct: 267 AKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKR 326
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
EA+ L +EM E H P + T+ T+ R+D+ + M
Sbjct: 327 QRLREAVGLLREMLEAGFH------------PSVVTYTTLCHGLCRSGRFDEAVEILDYM 374
Query: 304 LHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
G NA + ++ +AG+V +E +AR D + P +I
Sbjct: 375 AARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMAR-DEVVAPHVI 420
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/314 (18%), Positives = 141/314 (44%), Gaps = 21/314 (6%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D + PD+V Y A+++ ++++ + A+ + ++ + +G P+ TY +++ + CG+
Sbjct: 23 DKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIE 82
Query: 110 LVYEFFRK--VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ + + P + Y L++ L R+ + D+ +E+M RG +A Y L
Sbjct: 83 NALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTL 142
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM---KN 224
L G+ +EA ++++ P ++++ +I+ G I+ A + ++M ++
Sbjct: 143 VNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIES 202
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
SP+++T N ++ + +A +F+ E P++ T++T++
Sbjct: 203 GLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCR------------PNVVTYSTLI 250
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA--- 341
D + + D+ + +M+ G N + ++ + G++E + + A
Sbjct: 251 DGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCL 310
Query: 342 -DRITPPALIKERF 354
D +T LI F
Sbjct: 311 PDAVTYNTLIDGFF 324
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/370 (18%), Positives = 154/370 (41%), Gaps = 44/370 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM-------------------------RSLPKK 39
P+ + + I L + G I+ F V+D M R L
Sbjct: 169 PELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAH 228
Query: 40 KFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM 99
LER P++V Y+ +++ + + + A +L ++ + G + + TY V+
Sbjct: 229 NVFKRALERG---CRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVV 285
Query: 100 EVMLACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ +L G+ R+++ + +P+A+ Y L++ ++ + EAV + +M G
Sbjct: 286 DGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFH 345
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
S Y L LC +G+ +EA+ +D + P ++Y+ ++ +G + A
Sbjct: 346 PSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGY 405
Query: 219 FNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
F +M +P+++ + ++ + G +EA + + M IPD
Sbjct: 406 FEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGR------------IPD 453
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWE 336
+ TF+ +++ R D +++ M G + + ++ RA +V+ ++
Sbjct: 454 VVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQ 513
Query: 337 HLARADRITP 346
+ R+D ++P
Sbjct: 514 QM-RSDGLSP 522
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 118/273 (43%), Gaps = 23/273 (8%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTL------- 46
+TV Y ++ L + G +++ V+ MR +L FK L
Sbjct: 277 NTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLL 336
Query: 47 -ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
E + P +V Y + + R +++ A +L + +G P+A TY +++ +
Sbjct: 337 REMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKA 396
Query: 106 GKYNLVYEFFRKVQKSYI--PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ +F K+ + + P+ +AY L++ L + GK DEA +E M R G +
Sbjct: 397 GRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVT 456
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ L LC AG+ + L + + P +V+Y L+ + + A +F QM+
Sbjct: 457 FSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMR 516
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
+ SP+ T M+ LE E+A ++ E
Sbjct: 517 SDGLSPDRSTRRTMIHGLLEVNRDEDAKRIQDE 549
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 106/287 (36%), Gaps = 70/287 (24%)
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA 191
+++ L + K D+A++ + M + I Y L L + +EA ++
Sbjct: 1 MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60
Query: 192 NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK---------------------------- 223
P VV+Y +I G I+NA +++ M
Sbjct: 61 CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120
Query: 224 ---------NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI 274
C+PN VT N +V A L G +EA L ++MA +N E GL+I
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMA--ANGCPPELITFGLII 178
Query: 275 ---------------------------PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
PD+ TFN++LD E+R D V+KR L G
Sbjct: 179 KGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERG 238
Query: 308 LHFNAKRHLRMILDASRAGK----VELLEITWEHLARADRITPPALI 350
N + +I S+ K ++LL E RA+ +T ++
Sbjct: 239 CRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVV 285
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 76/180 (42%), Gaps = 17/180 (9%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P V Y ++ L ++G E +++D M + P+ + Y+++
Sbjct: 345 HPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARG---------------CAPNAITYSSI 389
Query: 64 LNACVRRKQWEGAFWVLQQL-KQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKS 121
++ + + A +++ + + P Y +++ + GK + YEF R ++
Sbjct: 390 VDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAG 449
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
IP+ + + +L+N L G+ D + M RG V Y L LC A + +EA
Sbjct: 450 RIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAF 509
>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 1219
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 136/328 (41%), Gaps = 34/328 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTLERWDPR---------- 52
PD V Y S+ L + G E + DSM R L + GTL +
Sbjct: 302 PDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL 361
Query: 53 --------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ P+ V++ ++ A ++ + + A V +++QQG P TYG V+ ++
Sbjct: 362 LDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCK 421
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ +F + + + P + Y L+++L K D+A + +M RGI
Sbjct: 422 SGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIF 481
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ + C G+ E+ D + ++ KP +++Y+ LI +G + A + M
Sbjct: 482 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMV 541
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ P+ VT N ++ Y + E+A+ LF+EM V PDI T+N
Sbjct: 542 SVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG------------VSPDIITYNI 589
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHF 310
+L +R + +Y + G
Sbjct: 590 ILQGLFQTRRTAAAKELYVGITESGTQL 617
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 120/286 (41%), Gaps = 19/286 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V Y V+N + + A+ ++ +G P+ TY ++ + + E
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEV 256
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
V+ +PN Y +V+ G+ EA+ ++ M G+ Y L LC
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCK 316
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+C EA D + K KP + +Y L+Q G + + + M +N PN
Sbjct: 317 NGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 376
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+I++ AY + G ++AM +F +M + +GL PD T+ T++ R
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQ-----------QGLN-PDTVTYGTVIGILCKSGR 424
Query: 293 WDDLELVYKRMLHHGLH-----FNAKRHLRMILDASRAGKVELLEI 333
+D +++M+ L +N+ H I D K +LE+
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/361 (20%), Positives = 145/361 (40%), Gaps = 69/361 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR-------------------SLPKKKFKTGT 45
P+ V Y SI L +A + + +V+ SM S + K G
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291
Query: 46 LERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L++ +EPD+V YN++++ + + A + + ++G KP TTYG +++
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G ++ + ++ I PN + +L+ ++GK D+A+ M ++G+
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT 411
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA------------------ 205
Y + LC +G+ E+A+ +++ P + Y LI +
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML 471
Query: 206 ----CLDS-------------GNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFE 247
CLD+ G + + +F+ M P+++T + ++ Y G +
Sbjct: 472 DRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMD 531
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
EA KL M + PD T+NT+++ R +D ++++ M G
Sbjct: 532 EATKLLASMVSVG------------MKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579
Query: 308 L 308
+
Sbjct: 580 V 580
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/357 (19%), Positives = 149/357 (41%), Gaps = 34/357 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y ++ + G + + + M D + P++V Y++++
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEM---------------LDRGILPNVVTYSSII 241
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
A + + + A VL + + G P+ TY ++ + G+ F +K+ +
Sbjct: 242 AALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVE 301
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ L + G+ EA + M +RG+ Y L + + G E
Sbjct: 302 PDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL 361
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+D + + P ++ LI A G + A +F++M+ +P+ VT ++ +
Sbjct: 362 LDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCK 421
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G E+AM+ F++M ++ + P +N+++ + +WD + +
Sbjct: 422 SGRVEDAMRYFEQMIDER------------LSPGNIVYNSLIHSLCIFDKWDKAKELILE 469
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPALIKERFC 355
ML G+ + +I + G+V +L ++ + D IT LI + +C
Sbjct: 470 MLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLI-DGYC 525
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 73/180 (40%), Gaps = 15/180 (8%)
Query: 145 AVSAVEDMERRG---IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
AVS M R G + + Y L C AG+ + + + K + +++T
Sbjct: 72 AVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTP 131
Query: 202 LIQA-CLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
L++ C D + +M C PN+ + NI++K + +EA++L Q M +D
Sbjct: 132 LLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDD 191
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
G PD+ ++ T+++ E D Y ML G+ N + +I
Sbjct: 192 G----------GDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSII 241
>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 784
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/350 (23%), Positives = 143/350 (40%), Gaps = 34/350 (9%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKKF---------KTGTLERW 49
S +PD V+Y +I L + G + E D++ M++ LP + K G L+
Sbjct: 242 SCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEA 301
Query: 50 DPRLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
++ PD+ YN ++ + + + AF + +++ P TY ++
Sbjct: 302 AQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLING 361
Query: 102 MLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
C +E K++ K PNA+ Y V+V +EGK D A + + ME G
Sbjct: 362 CFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPD 421
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
+ L C AG+ EA MD++ + K V+ ++ + +A + +
Sbjct: 422 CVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLS 481
Query: 221 QM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
K + V+ ++ Y + G EAMKL+ EM E +IP I T
Sbjct: 482 SASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKE------------IIPSIIT 529
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+NTM+ + D +L GL + + +IL R G+VE
Sbjct: 530 YNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVE 579
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 130/305 (42%), Gaps = 29/305 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + ++ +AG + E F ++D M +K K + V N +L
Sbjct: 420 PDCVTFNTLINGYCKAGRLSEAFRMMDEM---SRKGLKMNS------------VTLNTIL 464
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ ++ + A+ +L ++G +YG ++ GK + + ++ +K I
Sbjct: 465 HTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEII 524
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y ++ L GKTD+++ + ++ G+V Y + C G+ E+A
Sbjct: 525 PSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQF 584
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLE 242
+K+ K + KP + + L++ G + A +FN + + + VT N ++ +
Sbjct: 585 HNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCK 644
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
FEEA L EM E + PD YT+N +L A A R + E R
Sbjct: 645 EDRFEEAFDLLAEMEEKK------------LGPDCYTYNAILSALADAGRMKEAEEFMSR 692
Query: 303 MLHHG 307
++ G
Sbjct: 693 IVEQG 697
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 131/299 (43%), Gaps = 18/299 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD V YN +L+ ++ + A +L +K G P+ T+ +++ G +
Sbjct: 245 PDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQV 304
Query: 115 FR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
Q + +P+ Y +L+ L ++GK DEA ++ME ++ Y L
Sbjct: 305 IDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFD 364
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVT 232
+ +DK+ KP V+Y +++ + G + NA +M+ + SP+ VT
Sbjct: 365 CSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVT 424
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ Y + G EA ++ EM+ +KGL + + T NT+L E++
Sbjct: 425 FNTLINGYCKAGRLSEAFRMMDEMS-----------RKGLKMNSV-TLNTILHTLCGERK 472
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLARADRITPPALI 350
DD + G + + +I+ + GK VE +++ W+ + + I P++I
Sbjct: 473 LDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKL-WDEMKEKEII--PSII 528
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/300 (21%), Positives = 117/300 (39%), Gaps = 52/300 (17%)
Query: 53 LEPDIVVYNAVLNACVR--------------------------------------RKQWE 74
L+P+++ N ++NA VR +
Sbjct: 170 LKPNLLTCNTLINALVRYPSKPSVYLSKAIFSDVIKLGVKVNTNTFNILIYGCCIENKLS 229
Query: 75 GAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YIPNALAYKVLV 133
A ++ ++K P +Y +++V+ GK N + ++ + +PN + +LV
Sbjct: 230 EAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILV 289
Query: 134 NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANK 193
+ + G EA ++ M + ++ Y L LC GK +EA D++ +
Sbjct: 290 SGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLL 349
Query: 194 PLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKL 252
P VV+Y LI C D + + ++M+ PN VT N++VK Y++ G + A
Sbjct: 350 PDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNE 409
Query: 253 FQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
++M E PD TFNT+++ R + + M GL N+
Sbjct: 410 LRKMEESG------------FSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNS 457
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 99/251 (39%), Gaps = 33/251 (13%)
Query: 41 FKTG----TLERWDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSA 92
FK G ++ WD E P I+ YN ++ + + + L +L + G P
Sbjct: 503 FKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDE 562
Query: 93 TTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVED 151
TTY ++ G+ ++F K V+KS+ P+ +L+ L EG D+A+
Sbjct: 563 TTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNT 622
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
+G A Y + LC + EEA + ++ + P +Y ++ A D+G
Sbjct: 623 WISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGR 682
Query: 212 IQNA----AYIFNQMK--------------------NFCSPNLVTCNIMVKAYLEHGLFE 247
++ A + I Q K PN VT + + G ++
Sbjct: 683 MKEAEEFMSRIVEQGKLQDQTISLNKRKIESSSETSQESDPNSVTFSEQINELCTQGKYK 742
Query: 248 EAMKLFQEMAE 258
+AM + QE +
Sbjct: 743 DAMHMVQESTQ 753
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 84/214 (39%), Gaps = 50/214 (23%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFK---------------TGTLER- 48
PD Y +I + + G +++ F + M KK FK G L++
Sbjct: 560 PDETTYNTIILGYCREGQVEKAFQFHNKM---VKKSFKPDLFTCNILLRGLCTEGMLDKA 616
Query: 49 ------WDPRLEP-DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
W + + D V YN +++ + ++E AF +L +++++ P TY ++
Sbjct: 617 LKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSA 676
Query: 102 MLACGKYNLVYEFFR------KVQKSYI------------------PNALAYKVLVNTLW 137
+ G+ EF K+Q I PN++ + +N L
Sbjct: 677 LADAGRMKEAEEFMSRIVEQGKLQDQTISLNKRKIESSSETSQESDPNSVTFSEQINELC 736
Query: 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+GK +A+ V++ ++GI + Y L L
Sbjct: 737 TQGKYKDAMHMVQESTQKGITLHKSTYISLMEGL 770
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 98/238 (41%), Gaps = 23/238 (9%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY---EF 114
V+ + + A V + A + ++K+ KP+ T ++ ++ VY
Sbjct: 140 VILDTSIGAYVACNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAI 199
Query: 115 FRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F V K + N + +L+ E K EA+ + M+ Y + LC
Sbjct: 200 FSDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCK 259
Query: 174 AGKCEEALMQMDKICKVANKPLVV---SYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
GK EA D + + N L+ ++ L+ G ++ AA + + M +N P+
Sbjct: 260 KGKLNEA---RDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPD 316
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
+ T N+++ + G +EA +L EM ++PD+ T+NT+++ C
Sbjct: 317 VWTYNMLIGGLCKDGKIDEAFRLKDEMENLK------------LLPDVVTYNTLINGC 362
>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
Length = 799
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 14/254 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L D V Y A++N R + + A VLQ+++ +G A TY ++++ GK +
Sbjct: 386 LAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAF 445
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
K VQK PN + Y L + L ++G A + +M +G+ + Y L L
Sbjct: 446 LVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGL 505
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C AG E+A+ M + + KP V +YT +I A S + A + +M P +
Sbjct: 506 CKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTI 565
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N+++ + G E +L + M E + H P+ T+N+++ E
Sbjct: 566 VTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIH------------PNTTTYNSLMKQYCIE 613
Query: 291 KRWDDLELVYKRML 304
K +YK ML
Sbjct: 614 KNMKSTTEIYKGML 627
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 156/376 (41%), Gaps = 42/376 (11%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPK--------------KKFKTGT--LERW 49
+T +Y + L AG IK+ + D M S P + +T L
Sbjct: 252 NTCSYNILLKALCTAGRIKDAHQLFDEMASPPDVVTYGIMVHGYCTLSELETAIKLLSEM 311
Query: 50 DPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY 108
R LE + V Y +V+ Q A V++ + G A + VM G
Sbjct: 312 AARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDL 371
Query: 109 NLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+F ++QK + + + Y L+N L R G+ EA +++ME +G+ A Y L
Sbjct: 372 AAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVL 431
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227
C GK EA + +K+ + P VV+YT L G++ A + ++M CS
Sbjct: 432 IDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEM---CS 488
Query: 228 P----NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
N+ T N ++ + G E+AM+ +M D+ GL PD+YT+ T+
Sbjct: 489 KGLELNIFTYNSLINGLCKAGNLEQAMRTMIDM-----------DEAGLK-PDVYTYTTI 536
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLEITWEHLA 339
+ A K D + + ML G+ + ++ +G+VE LLE E
Sbjct: 537 IGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNI 596
Query: 340 RADRITPPALIKERFC 355
+ T +L+K+ +C
Sbjct: 597 HPNTTTYNSLMKQ-YC 611
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 115/285 (40%), Gaps = 31/285 (10%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
E + YN +L A + + A Q + P TYG+++ + +
Sbjct: 250 EKNTCSYNILLKALCTAGRIKDAH---QLFDEMASPPDVVTYGIMVHGYCTLSELETAIK 306
Query: 114 FFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++ + N +AY ++ L EG+ +AV VEDM G+V AA++ + C
Sbjct: 307 LLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFC 366
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLV 231
G A D++ K V+YT LI +G ++ A + +M++ + V
Sbjct: 367 RKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAV 426
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA----- 286
T +++ Y + G EA + +M + V P++ T+ + D
Sbjct: 427 TYTVLIDGYCKVGKMTEAFLVHNKMVQKR------------VTPNVVTYTALSDGLCKQG 474
Query: 287 --CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
CAA EL+++ M GL N + +I +AG +E
Sbjct: 475 DVCAAN------ELLHE-MCSKGLELNIFTYNSLINGLCKAGNLE 512
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 94/240 (39%), Gaps = 21/240 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERW--- 49
P+ V Y +++ L + G + +++ M SL K G LE+
Sbjct: 458 PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRT 517
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ L+PD+ Y ++ A + K+ + A +LQ++ +G KP+ TY ++M
Sbjct: 518 MIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCM 577
Query: 105 CGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ ++K+ PN Y L+ E + M + +V +
Sbjct: 578 SGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENT 637
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L + C A +EAL ++ + + SY LI+ A +F +M+
Sbjct: 638 YNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMR 697
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 16/186 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y +I L Q+ KEL D SL + E D ++P IV YN ++
Sbjct: 528 PDVYTYTTIIGALCQS---KEL----DRAHSLLQ--------EMLDKGIKPTIVTYNVLM 572
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + EG +L+ + ++ P+ TTY +M+ E ++ + + +
Sbjct: 573 NGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVV 632
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y +L+ + EA+ +M +G +A+ Y L R L K EA
Sbjct: 633 PNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRL 692
Query: 184 MDKICK 189
+K+ K
Sbjct: 693 FEKMRK 698
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV 231
C+A C L + ++ + + SY L++A +G I++A +F++M + P++V
Sbjct: 229 CNAVLCRLPLDEAVQLFQELPEKNTCSYNILLKALCTAGRIKDAHQLFDEMAS--PPDVV 286
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T IMV Y E A+KL EMA +N P YT +++ E
Sbjct: 287 TYGIMVHGYCTLSELETAIKLLSEMAARGLELN----------PVAYT--SVIALLCDEG 334
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR----ADRITPP 347
+ D V + M+ HG+ +A ++ R G + ++ + + AD +T
Sbjct: 335 QVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYT 394
Query: 348 ALI 350
ALI
Sbjct: 395 ALI 397
>gi|255660952|gb|ACU25645.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 376
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 137/286 (47%), Gaps = 15/286 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + ++ PD VVYNA+LN R + + F + + + +G + S +++ ++M + G
Sbjct: 15 ELVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNG 73
Query: 107 KYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K + V + +++S ++ +++ Y +LV+ + G D+++ +E E++G V A Y
Sbjct: 74 KVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYS 133
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+ LC + AL ++ + K KP V Y LI + ++A +F +M
Sbjct: 134 AMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREMGTM 193
Query: 226 -CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
C P ++T N ++ ++ +F EA L +E+ + KGL P + T++ ++
Sbjct: 194 HCPPTIITYNTLINGLCKNEMFGEAYNLVKELLD-----------KGLD-PGVITYSMLM 241
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ + + ++ ++ G + + H +I GK++L
Sbjct: 242 KGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQL 287
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 122/292 (41%), Gaps = 29/292 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D++ Y + + G+I + S+ L + K G L D Y+A++N
Sbjct: 93 DSITYGILVHGFCKNGYIDK------SLHVLEMAEQKGGVL---------DAFAYSAMIN 137
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP- 124
+ + A VL + + G KP+ Y ++ + K+ FR++ + P
Sbjct: 138 GLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREMGTMHCPP 197
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ Y L+N L + EA + V+++ +G+ Y L + LC K E AL
Sbjct: 198 TIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLW 257
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
+++ KP V + LI G +Q A ++ M + C+PNLV+ N +++ + +
Sbjct: 258 NQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKD 317
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
G A+ ++ + + + PDI ++N L + KR D
Sbjct: 318 GDIRNALVIWARILRNG------------LEPDIISYNITLKGLCSCKRISD 357
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/137 (18%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D L+P ++ Y+ ++ + E A + Q+ +G KP + +++ + + G
Sbjct: 224 ELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVG 283
Query: 107 KYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K L + + + PN +++ L+ +++G A+ + R G+ Y
Sbjct: 284 KMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343
Query: 166 DLARCLCSAGKCEEALM 182
+ LCS + +A++
Sbjct: 344 ITLKGLCSCKRISDAIL 360
>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
Length = 796
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 140/305 (45%), Gaps = 15/305 (4%)
Query: 44 GTLERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
G LE+ + L PD++ YN +++A + AF ++ ++ +G K T V+ +
Sbjct: 405 GKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNL 464
Query: 103 LACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
+Y E Q+ ++P+ ++Y ++ ++E + A+ + M R ++ S
Sbjct: 465 CKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSI 524
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
+ Y L + LC + +EA+ ++++ + P +Y +I A G+++NA N+
Sbjct: 525 STYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNK 584
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
M +N P++VTCN ++ HG ++A+KLF+ E + D+ T+
Sbjct: 585 MVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKV------------DVITY 632
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
NT++ + D + M GL +A + ++ S AG+ E LA
Sbjct: 633 NTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLAD 692
Query: 341 ADRIT 345
+ +++
Sbjct: 693 SGKLS 697
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 15/238 (6%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
RL P+ +N +++ + A L ++ G P A TY ++ G
Sbjct: 203 RLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEA 262
Query: 112 YEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
++++ I P Y LV+ R G +A VE M G Y LA
Sbjct: 263 RALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMG 322
Query: 171 LCSAGKCEEALMQMDKICKVANK-PLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSP 228
LC AGK +EA D++ ++ P VV+Y L+ AC +A + +M++ P
Sbjct: 323 LCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKP 382
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
LVT NI+VK+ + G EEA+ +++AE+ + PD+ T+NT++DA
Sbjct: 383 TLVTHNIVVKSLCKEGKLEEALGKLEKIAEEG------------LAPDVITYNTLIDA 428
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 137/306 (44%), Gaps = 34/306 (11%)
Query: 1 MSSY---PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDI 57
M++Y PD Y +A+ L QAG + E F + D M ER L PD+
Sbjct: 304 MTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEM-------------ERLGTAL-PDV 349
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
V YN +++AC + + A +L++++ +G KP+ T+ +V++ + GK K
Sbjct: 350 VTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEK 409
Query: 118 V-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
+ ++ P+ + Y L++ + G +A + +++M +G+ + LC +
Sbjct: 410 IAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKR 469
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNI 235
E+A + + P VSY ++ A N + A +++QM + P++ T N
Sbjct: 470 YEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNT 529
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
++K +EA+ E E KGLV PD T+N ++ A E D
Sbjct: 530 LIKGLCRMERLKEAIDKLNEFVE-----------KGLV-PDETTYNIIIHAYCKE---GD 574
Query: 296 LELVYK 301
LE ++
Sbjct: 575 LENAFR 580
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 128/313 (40%), Gaps = 86/313 (27%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGL--------------- 97
L PD V YN +LNA R+ A +L ++K+ G P+ TY
Sbjct: 239 LSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQAT 298
Query: 98 -VMEVMLACG------KYNL----------VYEFFRKVQK-----SYIPNALAYKVLVNT 135
V+E M A G YN+ V E FR + + +P+ + Y LV+
Sbjct: 299 KVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDA 358
Query: 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL 195
++ + +A+ +E+M +G+ + + + + LC GK EEAL +++KI + P
Sbjct: 359 CFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPD 418
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQM----------------KNFCS------------ 227
V++Y LI A +GN+ A + ++M N C
Sbjct: 419 VITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLH 478
Query: 228 --------PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
P+ V+ ++ AY + E A++L+ +M E +IP I T
Sbjct: 479 SPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERK------------LIPSIST 526
Query: 280 FNTMLDA-CAAEK 291
+NT++ C E+
Sbjct: 527 YNTLIKGLCRMER 539
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 123/285 (43%), Gaps = 23/285 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGT-------LERWDPRLE- 54
PD + Y ++ +AG++ + F ++D M + L F T ++R++ E
Sbjct: 417 PDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEEL 476
Query: 55 ----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
PD V Y V+ A + E A + Q+ ++ PS +TY +++ +
Sbjct: 477 LHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCR 536
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
+ + + V+K +P+ Y ++++ +EG + A M
Sbjct: 537 MERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVT 596
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
L LC GK ++AL + + K V++Y LIQ+ G++ A + F+ M+
Sbjct: 597 CNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDME 656
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
P+ T N+++ A E G EEA + ++A DS +++ +
Sbjct: 657 VKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLA-DSGKLSQSF 700
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 132/311 (42%), Gaps = 23/311 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ-GQKPSATTYGLVMEVMLACGKY--NLV 111
P + +A L+A R + A +L L+++ G +PS V+ +
Sbjct: 133 PTSPLADAALSAYARLRLPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQAS 192
Query: 112 YEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ FR ++ PN + +LV+T +G +A++ + M+ G+ A Y L
Sbjct: 193 LDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNA 252
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPN 229
C G EA + ++ + P +Y L+ A G I+ A + M + P+
Sbjct: 253 HCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPD 312
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
L T N++ + G +EA +L EM ++ G +PD+ T+NT++DAC
Sbjct: 313 LRTYNVLAMGLCQAGKVDEAFRLKDEM-----------ERLGTALPDVVTYNTLVDACFK 361
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE-----LLEITWEHLARADRI 344
+ D + + M G+ H ++ + GK+E L +I E LA D I
Sbjct: 362 WRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLA-PDVI 420
Query: 345 TPPALIKERFC 355
T LI + +C
Sbjct: 421 TYNTLI-DAYC 430
>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 833
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 132/308 (42%), Gaps = 31/308 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT++Y ++ TL + + D++ +M K+G P++V YN V+
Sbjct: 188 PDTISYNTVVKTLCEDSRSQRALDLLHTMVK------KSGG-------CSPNVVTYNTVI 234
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML---ACGKYNLVYEFFRKVQKS 121
+ R + A + ++ QQG P TY +++ + A K LV + +
Sbjct: 235 HGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLR--QMISNG 292
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+ PN + Y +++ G+ E +M +G++ + LC GK +EA
Sbjct: 293 FQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAA 352
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAY 240
D + +KP +V+Y+ L+ G + +FN M+ N + NI++ AY
Sbjct: 353 EFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAY 412
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ G+ +E M +F +M E VIPD T+ ++ A + R D +
Sbjct: 413 GKRGMMDETMLIFTQMQEQG------------VIPDACTYGIVIAAFSRMGRLADAMDKF 460
Query: 301 KRMLHHGL 308
+M+ GL
Sbjct: 461 NQMIAMGL 468
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/304 (21%), Positives = 133/304 (43%), Gaps = 28/304 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAF-WVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
L+ D++V + +L K+ + +L ++ + G +P +Y V++ + +
Sbjct: 150 LKMDVIVASILLKCLYHAKRSDDVVNLLLHRMPELGVEPDTISYNTVVKTLCEDSRSQRA 209
Query: 112 YEFFRKVQK---SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
+ + K PN + Y +++ L+REG+ +A + +M ++G+V Y +
Sbjct: 210 LDLLHTMVKKSGGCSPNVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSII 269
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCS 227
LC A ++A + + ++ +P V+Y +I SG + A +F +M +
Sbjct: 270 DALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLM 329
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN--------REYDKKGL------- 272
PN+VTCN + + +HG +EA + F MA + N Y +G
Sbjct: 330 PNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNL 389
Query: 273 --------VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASR 324
++ D FN ++DA D+ L++ +M G+ +A + +I SR
Sbjct: 390 FNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSR 449
Query: 325 AGKV 328
G++
Sbjct: 450 MGRL 453
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 121/282 (42%), Gaps = 26/282 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P+IV N+ +++ + + + A + +G KP+ TY +++ G + +
Sbjct: 328 LMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDML 387
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F ++ + + + ++++ + G DE + M+ +G++ A Y +
Sbjct: 388 NLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAF 447
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPN 229
G+ +A+ + +++ + KP + Y LIQ GN+ A + ++M + PN
Sbjct: 448 SRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPN 507
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQ---EMAEDSNHI--NREYDKKGLVI---------- 274
+V N ++ + + G EA +F + E + I N D GLV
Sbjct: 508 IVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLD 567
Query: 275 --------PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
PD+ ++NT++D R DD +++ ML G+
Sbjct: 568 AMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGV 609
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 107/245 (43%), Gaps = 23/245 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + + S+ G G I++ F V+D+M S +EPD+V YN ++
Sbjct: 541 PDVITFNSLIDGYGLVGKIEKAFGVLDAMIS---------------AGIEPDVVSYNTLI 585
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML----ACGKYNLVYEFFRKVQK 120
+ R + + + ++ +G KP+ TYG+++ + G + +E ++
Sbjct: 586 DGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEM---IES 642
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ +++ L R DEA++ + + + + A+ + + K EEA
Sbjct: 643 GTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEA 702
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
D I P +Y +I+ L G+++ A +F+ M K+ C+P+ N +++
Sbjct: 703 KELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNYIIRV 762
Query: 240 YLEHG 244
LE G
Sbjct: 763 LLEKG 767
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 73/332 (21%), Positives = 134/332 (40%), Gaps = 61/332 (18%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEFFRK 117
V+N V++A +R + + Q+++QG P A TYG+V+ G+ + + +F +
Sbjct: 404 VFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQM 463
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD-LARCLCSAGK 176
+ P + Y L+ G +A V +M RGI ++++ + LC G+
Sbjct: 464 IAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGR 523
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNI 235
EA D + + +P V+++ LI G I+ A + + M + P++V+ N
Sbjct: 524 VVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNT 583
Query: 236 MVKAY------------------------------LEHGLFEE-----AMKLFQEMAEDS 260
++ Y + HGLF + A K+ EM E
Sbjct: 584 LIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESG 643
Query: 261 -----------------NHINRE----YDKKGL--VIPDIYTFNTMLDACAAEKRWDDLE 297
N+ + E + K G V +I NTM+DA ++ ++ +
Sbjct: 644 TTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEAK 703
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++ + GL NA + MI + + G VE
Sbjct: 704 ELFDSISATGLVPNASTYGVMIKNLLKEGSVE 735
>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
Length = 578
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 124/279 (44%), Gaps = 21/279 (7%)
Query: 36 LPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY 95
L +K F++ L R R+ PDI +N V++ R Q A V + +K G PS TY
Sbjct: 174 LAEKAFRS-ALRR---RVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATY 229
Query: 96 GLVMEVMLACGKYNLVYE----FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVED 151
+++ G +Y V+ P A+ + VL+N + T AV E+
Sbjct: 230 NSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEE 289
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
M+++GI S Y L LCS GK EE + M+++ + P +++ +++ G
Sbjct: 290 MKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGM 349
Query: 212 IQNAA-YIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270
+ +A +I + P++V NI++ Y G E+AM + + MA KK
Sbjct: 350 MADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMA-----------KK 398
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH 309
G + P++ T+N ++ + W + M G+
Sbjct: 399 G-ISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIE 436
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 121/281 (43%), Gaps = 26/281 (9%)
Query: 7 TVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNA 66
V Y S+ L G ++E +++ M L L P+ + + VL
Sbjct: 299 VVTYNSLISGLCSEGKVEEGVKLMEEMEDLG---------------LSPNEITFGCVLKG 343
Query: 67 CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PN 125
++ A + + ++ +P Y ++++V GK + K I PN
Sbjct: 344 FCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPN 403
Query: 126 ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMD 185
Y L+ R G A +++M+ +GI Y L LC G+ +A+ +D
Sbjct: 404 VTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLD 463
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC--SPNLVTCNIMVKAYLEH 243
++ +V +P ++Y +IQ D GNI++A I +M+ C N+VT N+ +K + +
Sbjct: 464 EMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEK-CRKRANVVTYNVFIKYFCQI 522
Query: 244 GLFEEAMKLFQEMAED---SNHINREYDKKGLV----IPDI 277
G +EA L EM + N I E K+G++ PDI
Sbjct: 523 GKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKGYTPDI 563
>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
Length = 876
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 124/300 (41%), Gaps = 28/300 (9%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+++ Y +L ++ AF + + ++Q G KP Y ++ + + G+ Y F
Sbjct: 415 PNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSF 474
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
V+K + Y L++ + G TD A + +E M G + Y L LC
Sbjct: 475 I--VRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQ 532
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTC 233
+ EAL +D++ K + +YT LI L G +A ++N+M + P+ T
Sbjct: 533 KRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTY 592
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
+ + +Y + G E+A L +M + V PD+ T+N ++D C
Sbjct: 593 TVFINSYCKEGRLEDAEDLILKMEREG------------VAPDVVTYNILIDGCGHMGYI 640
Query: 294 DDLELVYKRMLHHGLHFN-----------AKRHLRMILDASRAGKVELLE--ITWEHLAR 340
D KRM+ N K +L + +G L+E ITW+ L R
Sbjct: 641 DRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLER 700
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 122/279 (43%), Gaps = 17/279 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P+++ Y ++++ + + + A VL+ +++ G +P+A TY +M ++ K +
Sbjct: 343 LVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAM 402
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
K+QK IPN + Y L+ E D A E ME+ G+ Y L L
Sbjct: 403 ALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDAL 462
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C AG+ EEA I + V YT LI +GN AA + +M C+P+
Sbjct: 463 CKAGRAEEAY---SFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDS 519
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T ++++ A + EA+ + +M+ +G+ I+ + ++D E
Sbjct: 520 YTYSVLLHALCKQKRLNEALPILDQMS-----------LRGIKCT-IFAYTILIDEMLRE 567
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ D + +Y M G +A + I + G++E
Sbjct: 568 GKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLE 606
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 21/206 (10%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V YN +++ C + AF L+++ +P+ TY L+++ +L K NL Y
Sbjct: 622 PDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLL---KGNLAY-- 676
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
R V S +W + D +E M + G+ + Y L C A
Sbjct: 677 VRSVDTS-------------GMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKA 723
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--PNLVT 232
G+ EEA + +D +C P YT LI+ C D+ + A + M C P L +
Sbjct: 724 GRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSE-CGFQPQLES 782
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAE 258
++V G FE+ LF ++ E
Sbjct: 783 YRLLVVGLCNEGDFEKVKSLFCDLLE 808
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 121/297 (40%), Gaps = 26/297 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P +V + ++N ++++ A + ++ K +G ++ ++ + E
Sbjct: 275 PTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKEL 334
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ +PN + Y +++ + GK D A+ ++ MER G +A Y L L
Sbjct: 335 LNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVK 394
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
K +A+ + K+ K P V++YT L+Q D + NA +F M +N P+
Sbjct: 395 DKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHA 454
Query: 233 CNIMVKAYLEHGLFEEA----------------MKLFQEMAEDSNH------INREYDKK 270
++ A + G EEA L ++ N I R D+
Sbjct: 455 YAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEG 514
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
PD YT++ +L A +KR ++ + +M G+ + +I + R GK
Sbjct: 515 --CTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGK 569
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 102/242 (42%), Gaps = 14/242 (5%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
YN L + R E V QL Q G P TY +++ G + +FR +
Sbjct: 36 YNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLL 95
Query: 120 KSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ + P LV R G+ +A M G + Y L + LC A
Sbjct: 96 EGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVR 155
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMV 237
+AL+ + + P V ++T LI SG + +A +F+ M +N P+++T N M+
Sbjct: 156 KALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMI 215
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
Y + G +A+K+ + M ++ H PD +T+NT++ +K + E
Sbjct: 216 VGYSKLGRMNDALKIKELMEKNGCH------------PDDWTYNTLIYGLCDQKTEEAEE 263
Query: 298 LV 299
L+
Sbjct: 264 LL 265
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 115/277 (41%), Gaps = 15/277 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P ++ YNA++ + + A + + +++ G P TY ++ L K E
Sbjct: 206 PSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLI-YGLCDQKTEEAEEL 264
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
V++ + P + + L+N K D+A+ M ++ L L
Sbjct: 265 LNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIK 324
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+ +EA +++I P V++YT +I SG + A + M ++ C PN T
Sbjct: 325 KDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWT 384
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ ++ +AM L +M +D +IP++ T+ T+L E
Sbjct: 385 YNSLMYGLVKDKKLHKAMALLTKMQKDG------------IIPNVITYTTLLQGQCDEHD 432
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+D+ +++ M +GL + + + +AG+ E
Sbjct: 433 FDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAE 469
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/280 (19%), Positives = 116/280 (41%), Gaps = 15/280 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML--ACGKYNL 110
LEP+ NA++ R + A W+ + G + + +Y ++++ + C + L
Sbjct: 99 LEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKAL 158
Query: 111 VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
V F + PN A+ L++ L + G+ +A + M + G+V S Y +
Sbjct: 159 VL-FLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVG 217
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNL 230
G+ +AL + + K P +Y LI D + + N +K +P +
Sbjct: 218 YSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTV 277
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT ++ Y F++A+++ +M + D+ F ++++ +
Sbjct: 278 VTFTNLINGYCMAEKFDDALRMKNKMMSSKCKL------------DLQVFGKLINSLIKK 325
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
R + + + + +GL N + +I ++GKV++
Sbjct: 326 DRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDI 365
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 114/286 (39%), Gaps = 36/286 (12%)
Query: 27 FDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ 86
FD+ + M + + + G L PD V YN ++ + + A + L +
Sbjct: 46 FDMTEYMGRVYSQLVQDGLL--------PDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEG 97
Query: 87 GQKPSATT-------YGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWRE 139
G +P T Y E+ AC + F N +Y +L+ L
Sbjct: 98 GLEPETFTCNALVLGYCRTGELRKAC------WLFLMMPLMGCQRNEYSYTILIQGLCDA 151
Query: 140 GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSY 199
+A+ M+R G + + L LC +G+ +A + D + + P V++Y
Sbjct: 152 KCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTY 211
Query: 200 TGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
+I G + +A I M KN C P+ T N ++ +GL ++ + +E+
Sbjct: 212 NAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLI-----YGLCDQKTEEAEELLN 266
Query: 259 DSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKRM 303
++ K+G P + TF +++ C AEK D L + K M
Sbjct: 267 NAV-------KEGFT-PTVVTFTNLINGYCMAEKFDDALRMKNKMM 304
>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
Length = 736
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 123/266 (46%), Gaps = 21/266 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDP----------RLE 54
P+ V Y ++ L +AG+I + F+V + GT + D L
Sbjct: 326 PNDVTYGALVDGLCKAGNISKAFEVYAKL---------IGTSDSADSDFYFPCEDRHTLA 376
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V Y A+++ + + + A +L + G +P+ Y +++ GK + E
Sbjct: 377 PNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEV 436
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F ++ K Y+P+ Y L++ ++++G+ D A+ + M + + Y + LC
Sbjct: 437 FLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCR 496
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+ E+AL + + + P VV+YT LI +G I + +F QM + CSPN VT
Sbjct: 497 IGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVT 556
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAE 258
+++ GL ++A L EM +
Sbjct: 557 YRVLINHLCAAGLLDKARLLLGEMKQ 582
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 142/343 (41%), Gaps = 45/343 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + + +AG I++ + + MRS+ P +V Y A++
Sbjct: 256 PDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVG---------------CSPTVVTYTALI 300
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV------ 118
+A ++ KQ A + ++ G +P+ TYG +++ + G + +E + K+
Sbjct: 301 HAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDS 360
Query: 119 -----------QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ + PN + Y LV+ L + K D A ++ M G + +Y L
Sbjct: 361 ADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDAL 420
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
C AGK + A ++ K P V +YT LI G + A + +QM K+ C
Sbjct: 421 IDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSC 480
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+PN+VT M+ G E+A+KL M E KG P++ T+ ++D
Sbjct: 481 TPNVVTYTAMIDGLCRIGESEKALKLLSLMEE-----------KGCS-PNVVTYTALIDG 528
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ D ++ +M G N + +I AG ++
Sbjct: 529 LGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLD 571
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 108/230 (46%), Gaps = 6/230 (2%)
Query: 106 GKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
GK++ ++ +++ +K ++P+ Y ++ L K ++A ++M+ G+ Y
Sbjct: 202 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 261
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
L C AG E+A +++ V P VV+YT LI A L + + A IF++M +
Sbjct: 262 TILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVD 321
Query: 225 F-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY----DKKGLVIPDIYT 279
C PN VT +V + G +A +++ ++ S+ + ++ + + + P++ T
Sbjct: 322 AGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVT 381
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ ++D + D + ML G N + +I +AGK++
Sbjct: 382 YGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKID 431
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/372 (20%), Positives = 150/372 (40%), Gaps = 79/372 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L +A + +++D+M S EP+ +VY+A++
Sbjct: 377 PNVVTYGALVDGLCKAHKVDHAHELLDAMLS---------------SGCEPNHIVYDALI 421
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ + + + A V Q+ + G PS TY +++ M G+ +L + ++ K S
Sbjct: 422 DGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCT 481
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y +++ L R G++++A+ + ME +G + Y L L AGK + +L
Sbjct: 482 PNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDL 541
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVT---CNI----- 235
++ + P V+Y LI +G + A + +MK P + C I
Sbjct: 542 FTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSK 601
Query: 236 --------------------------MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD- 268
++ + + G E AM+L +EM E + + + D
Sbjct: 602 SFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDM 661
Query: 269 -------------------------KKGLVIPDIYTFNTMLDACAAEKRWDD-LELVYKR 302
++G V P++ F ++ K+WD+ L+L Y
Sbjct: 662 YASLIQALCLASQVEEAFRLYSEMTRRGFV-PELSVFVCLIKGLVEVKKWDEALQLCYG- 719
Query: 303 MLHHGLHFNAKR 314
+ H G+++ +
Sbjct: 720 ICHEGVNWQGNK 731
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/282 (18%), Positives = 118/282 (41%), Gaps = 20/282 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V Y +L+ +++KQ ++ + +G P+ + + ++ Y Y+
Sbjct: 75 PNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKL 134
Query: 115 FRKVQKSYIPNA-LAYKVLVNTLWREGKT------DEAVSAVEDMERRGIVGSAALYYDL 167
++ P + Y + + ++ + K D A +M V + +
Sbjct: 135 LNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANF 194
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-C 226
ARCLC GK ++A + ++ + P +Y+ +I + ++ A +F +MK
Sbjct: 195 ARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGV 254
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+P++ T I++ ++ + GL E+A LF+EM P + T+ ++ A
Sbjct: 255 TPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCS------------PTVVTYTALIHA 302
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
K+ ++ RM+ G N + ++ +AG +
Sbjct: 303 YLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNI 344
>gi|224111364|ref|XP_002315827.1| predicted protein [Populus trichocarpa]
gi|222864867|gb|EEF01998.1| predicted protein [Populus trichocarpa]
Length = 472
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 134/300 (44%), Gaps = 17/300 (5%)
Query: 44 GTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
G +R +++PD YN + R + VL+++ Q G P + TY ++
Sbjct: 159 GLFKRVKNKVKPDANTYNVMFFGWCRVRNPTRGMKVLEEMIQLGHTPDSFTYITAIDAFC 218
Query: 104 ACGKYNL---VYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
G N ++EF R K P A Y +++ L R + DE +EDM G +
Sbjct: 219 RAGMVNEAAELFEFMRTKGSTMSSPTAKTYAIMIGALVRNNRMDECFKLLEDMINSGCLP 278
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219
+ + +L +CSAGK +EA + ++ P +V+Y ++ ++ N + A ++
Sbjct: 279 DVSTFKELIEGMCSAGKIDEAYRFLQEMGNKGYPPDIVTYNCFLKVLCENKNSEEALRLY 338
Query: 220 NQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
+M + C P++ T N+++ + E G + A + + EM DK+G D+
Sbjct: 339 ERMIEAGCFPSVQTHNMLISMFFEMGDPDGAFETWYEM-----------DKRGCA-QDVD 386
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
T+ M+D + +D + + +++ G+ ++ ++ S G + + EH+
Sbjct: 387 TYIVMIDGLFGCNKVEDACFLIEDIVNKGMKLPYQKFDSFLMQLSVIGNIRAIHRLSEHM 446
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 107/281 (38%), Gaps = 21/281 (7%)
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSA 148
+P + L+++ + C F++V+ P+A Y V+ R +
Sbjct: 135 QPEINAFNLLLDALCKCCLAEDAEGLFKRVKNKVKPDANTYNVMFFGWCRVRNPTRGMKV 194
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEA---LMQMDKICKVANKPLVVSYTGLIQA 205
+E+M + G + Y C AG EA M + P +Y +I A
Sbjct: 195 LEEMIQLGHTPDSFTYITAIDAFCRAGMVNEAAELFEFMRTKGSTMSSPTAKTYAIMIGA 254
Query: 206 CLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
+ + + + M N C P++ T +++ G +EA + QEM N
Sbjct: 255 LVRNNRMDECFKLLEDMINSGCLPDVSTFKELIEGMCSAGKIDEAYRFLQEMG------N 308
Query: 265 REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASR 324
+ Y PDI T+N L K ++ +Y+RM+ G + + H +I
Sbjct: 309 KGYP------PDIVTYNCFLKVLCENKNSEEALRLYERMIEAGCFPSVQTHNMLISMFFE 362
Query: 325 AGKVELLEITWEHLAR----ADRITPPALIKERF-CNRLEN 360
G + TW + + D T +I F CN++E+
Sbjct: 363 MGDPDGAFETWYEMDKRGCAQDVDTYIVMIDGLFGCNKVED 403
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/262 (19%), Positives = 96/262 (36%), Gaps = 48/262 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD+ Y + +AG + E ++ + MR+ K T+ P Y ++
Sbjct: 205 PDSFTYITAIDAFCRAGMVNEAAELFEFMRT------KGSTMS------SPTAKTYAIMI 252
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
A VR + + F +L+ + G P +T+ ++E M + GK + Y F +++ K Y
Sbjct: 253 GALVRNNRMDECFKLLEDMINSGCLPDVSTFKELIEGMCSAGKIDEAYRFLQEMGNKGYP 312
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVE--------------------------------- 150
P+ + Y + L ++EA+ E
Sbjct: 313 PDIVTYNCFLKVLCENKNSEEALRLYERMIEAGCFPSVQTHNMLISMFFEMGDPDGAFET 372
Query: 151 --DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+M++RG Y + L K E+A ++ I K + +
Sbjct: 373 WYEMDKRGCAQDVDTYIVMIDGLFGCNKVEDACFLIEDIVNKGMKLPYQKFDSFLMQLSV 432
Query: 209 SGNIQNAAYIFNQMKNFCSPNL 230
GNI+ + M+ F +P++
Sbjct: 433 IGNIRAIHRLSEHMRTFHNPSM 454
>gi|255661010|gb|ACU25674.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
Length = 376
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 120/245 (48%), Gaps = 16/245 (6%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D ++ PD VVYNA+LN R + + F + + + ++G + S ++ ++M + G+ +
Sbjct: 18 DSKVSPDAVVYNAMLNGFYRAGRIKDCFELWEMMGKEGSR-SVASFNIMMRGLFDNGRVD 76
Query: 110 LVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
V + ++K Y+ +++ Y +LV+ + G ++++ +E ER+G A Y +
Sbjct: 77 EVNSIWELMKKGGYVEDSITYGILVHGFCKNGYINKSLHLLEIXERKGRXXDALAYXPMI 136
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCS 227
LC K E+A+ ++ + + KP Y LI + + ++A +F +M CS
Sbjct: 137 NGLCKETKLEKAVSVLNGMIQSGCKPNTHVYNALINGLIGASKSEDAIRVFREMGFPHCS 196
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA- 286
P +VT +I++ + F EA L +EM E KGL P + T++ ++
Sbjct: 197 PTIVTYSILINGLCKSERFSEAYDLVKEMLE-----------KGLT-PSVITYSLLMKGL 244
Query: 287 CAAEK 291
C K
Sbjct: 245 CLGHK 249
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 107/242 (44%), Gaps = 14/242 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D + Y ++N + + E A VL + Q G KP+ Y ++ ++ K F
Sbjct: 128 DALAYXPMINGLCKETKLEKAVSVLNGMIQSGCKPNTHVYNALINGLIGASKSEDAIRVF 187
Query: 116 RKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
R++ + P + Y +L+N L + + EA V++M +G+ S Y L + LC
Sbjct: 188 REMGFPHCSPTIVTYSILINGLCKSERFSEAYDLVKEMLEKGLTPSVITYSLLMKGLCLG 247
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
K E AL +++ K KP V + LI Q+A ++ M + CSPNLVT
Sbjct: 248 HKVEMALQLWNQVTKKGFKPDVQMHNILIHGLCSVAKTQHALSLYLDMNRWNCSPNLVTH 307
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N +++ + + G A+ ++ + ++ + PDI ++N L + R
Sbjct: 308 NTLMEGFYKDGDIRNALVMWARILKNE------------LQPDIISYNITLKGLCSCNRI 355
Query: 294 DD 295
D
Sbjct: 356 SD 357
>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/348 (22%), Positives = 135/348 (38%), Gaps = 68/348 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ + G I+E ++D M + PDI YNA++
Sbjct: 183 PNVVVYSTLIMGYASEGRIEEARRLLDGMSC---------------SGVAPDIFCYNAII 227
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + E A L +++ +G KP A T+G + GK ++F + + +
Sbjct: 228 SCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLM 287
Query: 124 PNALAYKVLVNT-----------------------------------LWREGKTDEAVSA 148
PN Y VL+N L + G+ EA+
Sbjct: 288 PNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKV 347
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+++ +G+V Y L C G+ E+A D++C P + Y L+
Sbjct: 348 FSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCK 407
Query: 209 SGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
SG+IQ A +F+ M + P+ VT + M+ Y + EA LF EM
Sbjct: 408 SGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMP---------- 457
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG----LHFN 311
KG V P + +N ++ C E + +++ ML G L FN
Sbjct: 458 -SKG-VQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFN 503
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/320 (20%), Positives = 121/320 (37%), Gaps = 33/320 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLERWDPR 52
PD V + + + + G + E D M L FK G L
Sbjct: 253 PDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSI 312
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
PD+ +A ++ ++ + + A V +LK++G P TY ++
Sbjct: 313 FRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCK 372
Query: 105 CGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ +E ++ K PN Y LV+ L + G A + M +G+ +
Sbjct: 373 QGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVT 432
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + C + EA ++ +P Y L+ C G+++ A +F +M
Sbjct: 433 YSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREML 492
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
++ N ++ Y + +EA +LFQEM ++PD T+ T+
Sbjct: 493 QKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQ------------IMPDHVTYTTV 540
Query: 284 LDACAAEKRWDDLELVYKRM 303
+D + ++ L++K M
Sbjct: 541 IDWHCKAGKMEEANLLFKEM 560
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 113/247 (45%), Gaps = 21/247 (8%)
Query: 46 LERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L+ + R L P V Y A++N K A +L+++ G KP+ Y ++ +
Sbjct: 138 LDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYAS 197
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ + S + P+ Y +++ L + GK +EA + + +++ RG+ A
Sbjct: 198 EGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVT 257
Query: 164 YYDLARCLCSAGKCEEALMQMDKICK---VANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
+ GK EA D++ + N PL YT LI +GN+ A IF
Sbjct: 258 FGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPL---YTVLINGHFKAGNLMEALSIFR 314
Query: 221 QMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
+ P++ TC+ + L++G +EA+K+F E+ E KGLV PD++T
Sbjct: 315 HLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKE-----------KGLV-PDVFT 362
Query: 280 FNTMLDA 286
+++++
Sbjct: 363 YSSLISG 369
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 135/339 (39%), Gaps = 35/339 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T Y I L +A + E + M+ KTG L+PD +A++
Sbjct: 8 PNTYTYTIITAGLCRAKRMNEAKLTFEEMQ-------KTG--------LKPDYNACSALI 52
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ +R + + + G + TY +++ + GK E + +
Sbjct: 53 DGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCK 112
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN+ + +L+ RE A+ +++ME+R +V SA Y + LC A
Sbjct: 113 PNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKL 172
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS---PNLVTCNIMVKAY 240
++K+ KP VV Y+ LI G I+ A + + M CS P++ N ++
Sbjct: 173 LEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMS--CSGVAPDIFCYNAIISCL 230
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ G EEA E+ +GL PD TF + + + + +
Sbjct: 231 SKAGKMEEASTYLLEI-----------QGRGLK-PDAVTFGAFILGYSKTGKMTEAAKYF 278
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHL 338
ML HGL N + +I +AG + E L I + HL
Sbjct: 279 DEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSI-FRHL 316
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/323 (19%), Positives = 120/323 (37%), Gaps = 73/323 (22%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERW--- 49
PD Y S+ + G +++ F++ D M +L K+G ++R
Sbjct: 358 PDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKL 417
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ LEPD V Y+ +++ + + AF + ++ +G +P + Y ++
Sbjct: 418 FDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCK 477
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G FR++ + L++ L++ + K EA ++M + I+ Y
Sbjct: 478 EGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTY 537
Query: 165 YDLARCLCSAGKCEEA-----------------LMQMDKICKVANKPLVVSYTGLIQA-- 205
+ C AGK EEA +K+ KP V+Y +I A
Sbjct: 538 TTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHC 597
Query: 206 -------------------CLDSGNIQN--------------AAYIFNQMKNF-CSPNLV 231
L G I + A+ + ++M P+L
Sbjct: 598 KEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLA 657
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQ 254
C+ +V+++ E G +EA ++F+
Sbjct: 658 ACSTLVRSFHEAGKMDEATRVFE 680
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 117/275 (42%), Gaps = 20/275 (7%)
Query: 83 LKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGK 141
+ ++G P+ TY ++ + + N F ++QK+ + P+ A L++ REG
Sbjct: 1 MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60
Query: 142 TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
DE + + M GI + Y L LC GK E+A + + + KP ++
Sbjct: 61 IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120
Query: 202 LIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
LI+ N+ A + ++M K P+ V+ M+ A KL ++M
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 180
Query: 261 NHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMIL 320
+ P++ ++T++ A+E R ++ + M G+ + + +I
Sbjct: 181 ------------LKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIIS 228
Query: 321 DASRAGKVE-----LLEITWEHLARADRITPPALI 350
S+AGK+E LLEI L + D +T A I
Sbjct: 229 CLSKAGKMEEASTYLLEIQGRGL-KPDAVTFGAFI 262
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 79/196 (40%), Gaps = 22/196 (11%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGA-----------------FWVLQQLKQQGQK 89
E ++ PD V Y V++ + + E A F + +++ +G K
Sbjct: 524 EMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVK 583
Query: 90 PSATTYGLVMEVMLACGKYNLVYEFFRK---VQKSYIPNALAYKVLVNTLWREGKTDEAV 146
P TYGLV + C + NLV F + V K + + +L+ L + EA
Sbjct: 584 PDEVTYGLV--IYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEAS 641
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
+++M G+ S A L R AGK +EA + + + P + L+
Sbjct: 642 KLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGN 701
Query: 207 LDSGNIQNAAYIFNQM 222
L+ + ++A + Q+
Sbjct: 702 LNDTDSEDARNLIKQL 717
>gi|449467965|ref|XP_004151692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At4g17915-like [Cucumis sativus]
gi|449468117|ref|XP_004151768.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At4g17915-like [Cucumis sativus]
gi|449532400|ref|XP_004173169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At4g17915-like [Cucumis sativus]
Length = 456
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/328 (21%), Positives = 135/328 (41%), Gaps = 31/328 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ + + + V+ MR + + PD++ YN+++
Sbjct: 40 PDVVTYNTLIDGYCRFSGMDAAYSVLYRMR---------------EAGISPDVITYNSLI 84
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
R E + + +++ Q G P +Y +M GK + Y F+ + K
Sbjct: 85 AGATRNFSLEQSLDLFEEMLQSGITPDIWSYNTLMHCFFILGKPDEAYRVFKDIILKDLS 144
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + ++N L + G T A+ +++R G + Y L LC + A+
Sbjct: 145 PHPVTFNTMINGLCKHGYTSNAIMLFRNLQRHGFIPQLVTYNILINGLCKVDRLRAAIRM 204
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--FCSPNLVTCNIMVKAYL 241
+++ +P V+YT L+++C S + IF++MKN + C + A+L
Sbjct: 205 LNEAMDSGLEPNAVTYTTLMKSCFRSRQYERGFEIFSKMKNKGYAFDGFAYCTV-SGAFL 263
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G FEEA ++M ++ I DI +NT ++ E + + ++
Sbjct: 264 KLGRFEEAKFCMEQMIKNDVGI------------DITFYNTFINLYCKEGKLEAAYKLFD 311
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ GL + H + R G +E
Sbjct: 312 EIEPRGLECDVYTHSIITNGLCRVGNIE 339
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 4/205 (1%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P +V YN ++N + + A +L + G +P+A TY +M+ +Y +E
Sbjct: 180 PQLVTYNILINGLCKVDRLRAAIRMLNEAMDSGLEPNAVTYTTLMKSCFRSRQYERGFEI 239
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F K++ K Y + AY + + G+ +EA +E M + + Y C
Sbjct: 240 FSKMKNKGYAFDGFAYCTVSGAFLKLGRFEEAKFCMEQMIKNDVGIDITFYNTFINLYCK 299
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLV 231
GK E A D+I + V +++ + GNI+ A N + F S NLV
Sbjct: 300 EGKLEAAYKLFDEIEPRGLECDVYTHSIITNGLCRVGNIEGAMQHLNCVYTTGFAS-NLV 358
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEM 256
N ++ + G + A++LF+ M
Sbjct: 359 ALNCLIDRLCKAGQIDRAIRLFESM 383
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 1/178 (0%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D LEP+ V Y ++ +C R +Q+E F + ++K +G Y V L G
Sbjct: 207 EAMDSGLEPNAVTYTTLMKSCFRSRQYERGFEIFSKMKNKGYAFDGFAYCTVSGAFLKLG 266
Query: 107 KYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
++ ++ K+ + + Y +N +EGK + A +++E RG+ +
Sbjct: 267 RFEEAKFCMEQMIKNDVGIDITFYNTFINLYCKEGKLEAAYKLFDEIEPRGLECDVYTHS 326
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ LC G E A+ ++ + +V+ LI +G I A +F M+
Sbjct: 327 IITNGLCRVGNIEGAMQHLNCVYTTGFASNLVALNCLIDRLCKAGQIDRAIRLFESME 384
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/285 (20%), Positives = 117/285 (41%), Gaps = 18/285 (6%)
Query: 64 LNACV----RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
LN CV + +Q + A V+ + G P TY +++ + Y +++
Sbjct: 10 LNICVASFCKSQQMQKAEAVIIDGIRIGVLPDVVTYNTLIDGYCRFSGMDAAYSVLYRMR 69
Query: 120 KSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
++ I P+ + Y L+ R ++++ E+M + GI Y L C GK +
Sbjct: 70 EAGISPDVITYNSLIAGATRNFSLEQSLDLFEEMLQSGITPDIWSYNTLMHCFFILGKPD 129
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQMKNFCSPNLVTCNIMV 237
EA I P V++ +I G NA +F N ++ P LVT NI++
Sbjct: 130 EAYRVFKDIILKDLSPHPVTFNTMINGLCKHGYTSNAIMLFRNLQRHGFIPQLVTYNILI 189
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ A+++ E A DS + P+ T+ T++ +C ++++
Sbjct: 190 NGLCKVDRLRAAIRMLNE-AMDSG-----------LEPNAVTYTTLMKSCFRSRQYERGF 237
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARAD 342
++ +M + G F+ + + + G+ E + E + + D
Sbjct: 238 EIFSKMKNKGYAFDGFAYCTVSGAFLKLGRFEEAKFCMEQMIKND 282
>gi|255660956|gb|ACU25647.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
Length = 376
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 139/286 (48%), Gaps = 15/286 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + ++ PD VV NA+LN R + + F + + + +G + S +++ ++M + G
Sbjct: 15 EIVESKVSPDAVVCNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNG 73
Query: 107 KYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K + V + +++S ++ +++ Y +LV+ + G +D+++ +E E++G V A Y
Sbjct: 74 KVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYSDKSLHVLEMAEQKGGVLDAFAYS 133
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+ LC + AL ++ + K KP V Y LI + + ++A +F +M
Sbjct: 134 AMINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTM 193
Query: 226 -CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
CSP ++T N ++ ++ +F EA L +E+ + KGL P + T++ ++
Sbjct: 194 HCSPTIITYNTLINGLCKNEMFGEAYNLVKELLD-----------KGLD-PGVITYSMLM 241
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ + + ++ ++ G + + H +I GK++L
Sbjct: 242 KGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQL 287
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 106/242 (43%), Gaps = 14/242 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D Y+A++N + + A +VL + + G KP+ Y ++ ++ K+ F
Sbjct: 128 DAFAYSAMINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVF 187
Query: 116 RKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
R++ + P + Y L+N L + EA + V+++ +G+ Y L + LC
Sbjct: 188 REMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLD 247
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
K E AL +++ KP V + LI G +Q A ++ M + C+PNLV+
Sbjct: 248 HKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSH 307
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N +++ + + G A+ ++ + + + PDI ++N L + R
Sbjct: 308 NTLMEGFYKDGDIRNALVIWARILRNG------------LEPDIISYNITLKGLCSCNRI 355
Query: 294 DD 295
D
Sbjct: 356 SD 357
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/137 (18%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D L+P ++ Y+ ++ + E A + Q+ +G KP + +++ + + G
Sbjct: 224 ELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVG 283
Query: 107 KYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K L + + + PN +++ L+ +++G A+ + R G+ Y
Sbjct: 284 KMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343
Query: 166 DLARCLCSAGKCEEALM 182
+ LCS + +A++
Sbjct: 344 ITLKGLCSCNRISDAIL 360
>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g31850, chloroplastic; AltName: Full=Protein PROTON
GRADIENT REGULATION 3; Flags: Precursor
gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
Length = 1112
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 137/302 (45%), Gaps = 30/302 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + + L +AG+ E FD +D MR D + P++ YN ++
Sbjct: 361 PDVVTFTILVDALCKAGNFGEAFDTLDVMR---------------DQGILPNLHTYNTLI 405
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+R + + A + ++ G KP+A TY + ++ G E F K++ K
Sbjct: 406 CGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIA 465
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN +A + +L + G+ EA ++ G+V + Y + +C G+ +EA+
Sbjct: 466 PNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKL 525
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ ++ + +P V+ LI + + A +F +MK P +VT N ++ +
Sbjct: 526 LSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGK 585
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYK 301
+G +EA++LF+ M + KG P+ TFNT+ D C ++ L++++K
Sbjct: 586 NGKIQEAIELFEGMVQ-----------KG-CPPNTITFNTLFDCLCKNDEVTLALKMLFK 633
Query: 302 RM 303
M
Sbjct: 634 MM 635
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 134/315 (42%), Gaps = 31/315 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + G++G I ELF++ M + E + + +N V+
Sbjct: 818 PDVATYNFLLDAYGKSGKIDELFELYKEMST---------------HECEANTITHNIVI 862
Query: 65 NACVRRKQWEGAFWVLQQL-KQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSY 122
+ V+ + A + L + P+A TYG +++ + G+ + F +
Sbjct: 863 SGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGC 922
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN Y +L+N + G+ D A + + M + G+ Y L CLC G+ +E L
Sbjct: 923 RPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLH 982
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF--CSPNLVTCNIMVKAY 240
++ + P VV Y +I S ++ A +FN+MK +P+L T N ++
Sbjct: 983 YFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNL 1042
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
G+ EEA K++ E+ + GL P+++TFN ++ + + + VY
Sbjct: 1043 GIAGMVEEAGKIYNEI-----------QRAGLE-PNVFTFNALIRGYSLSGKPEHAYAVY 1090
Query: 301 KRMLHHGLHFNAKRH 315
+ M+ G N +
Sbjct: 1091 QTMVTGGFSPNTGTY 1105
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/362 (20%), Positives = 145/362 (40%), Gaps = 64/362 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + LG+AG I E ++++ M D PD+V Y ++
Sbjct: 256 PNVYTFTICIRVLGRAGKINEAYEILKRMD---------------DEGCGPDVVTYTVLI 300
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+A ++ + A V +++K KP TY +++ + V +F+ +++K ++
Sbjct: 301 DALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHV 360
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + +LV+ L + G EA ++ M +GI+ + Y L L + ++AL
Sbjct: 361 PDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEL 420
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTC--------- 233
+ + KP +Y I SG+ +A F +MK +PN+V C
Sbjct: 421 FGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAK 480
Query: 234 --------------------------NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
N+M+K Y + G +EA+KL EM E+
Sbjct: 481 AGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCE----- 535
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
PD+ N++++ R D+ ++ RM L + ++ + GK
Sbjct: 536 -------PDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGK 588
Query: 328 VE 329
++
Sbjct: 589 IQ 590
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 110/250 (44%), Gaps = 16/250 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ VA + +L +AG +E + ++ D L PD V YN ++
Sbjct: 466 PNIVACNASLYSLAKAGRDREAKQIFYGLK---------------DIGLVPDSVTYNMMM 510
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + A +L ++ + G +P ++ + + + ++ F ++++ +
Sbjct: 511 KCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLK 570
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y L+ L + GK EA+ E M ++G + + L CLC + AL
Sbjct: 571 PTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKM 630
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
+ K+ + P V +Y +I + +G ++ A F+QMK P+ VT ++ ++
Sbjct: 631 LFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKA 690
Query: 244 GLFEEAMKLF 253
L E+A K+
Sbjct: 691 SLIEDAYKII 700
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 73/338 (21%), Positives = 138/338 (40%), Gaps = 31/338 (9%)
Query: 13 IAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQ 72
I L +AG ID+ S ++ G D L P I+ Y+ +
Sbjct: 720 IGSILAEAG--------IDNAVSFSERLVANGICRDGDSILVP-IIRYSC------KHNN 764
Query: 73 WEGAFWVLQQL-KQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YIPNALAYK 130
GA + ++ K G +P TY L++ +L + + F +V+ + IP+ Y
Sbjct: 765 VSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYN 824
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL-MQMDKICK 189
L++ + GK DE ++M + + + L AG ++AL + D +
Sbjct: 825 FLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSD 884
Query: 190 VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEE 248
P +Y LI SG + A +F M ++ C PN NI++ + + G +
Sbjct: 885 RDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADA 944
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
A LF+ M ++ V PD+ T++ ++D R D+ +K + GL
Sbjct: 945 ACALFKRMVKEG------------VRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGL 992
Query: 309 HFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
+ + + +I ++ ++E + + + + ITP
Sbjct: 993 NPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITP 1030
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 130/285 (45%), Gaps = 22/285 (7%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK---YNLVYEFFR 116
YN +++ ++ + A V +++ +G +PS TY +M+ GK + V +
Sbjct: 191 YNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYS---SLMVGLGKRRDIDSVMGLLK 247
Query: 117 KVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
+++ + PN + + + L R GK +EA ++ M+ G Y L LC+A
Sbjct: 248 EMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTAR 307
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCN 234
K + A +K+ +KP V+Y L+ D+ ++ + +++M K+ P++VT
Sbjct: 308 KLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFT 367
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
I+V A + G F EA M + ++P+++T+NT++ R D
Sbjct: 368 ILVDALCKAGNFGEAFDTLDVMRDQG------------ILPNLHTYNTLICGLLRVHRLD 415
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMILDASRAG-KVELLEITWEHL 338
D ++ M G+ A ++ I ++G V LE T+E +
Sbjct: 416 DALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALE-TFEKM 459
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 73/357 (20%), Positives = 148/357 (41%), Gaps = 41/357 (11%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P V Y ++ LG+ G I+E ++ + M +++ P P+ + +
Sbjct: 567 MKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGM------------VQKGCP---PNTITF 611
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N + + + + A +L ++ G P TY ++ ++ G+ FF +++K
Sbjct: 612 NTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKK 671
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY-DLARCLCSAGKCEE 179
P+ + L+ + + ++A + + A L++ DL + + +
Sbjct: 672 LVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDN 731
Query: 180 AL-----MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--FCSPNLVT 232
A+ + + IC+ + LV +I+ N+ A +F + P L T
Sbjct: 732 AVSFSERLVANGICRDGDSILVP----IIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPT 787
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N+++ LE + E A +F ++ K IPD+ T+N +LDA +
Sbjct: 788 YNLLIGGLLEADMIEIAQDVFLQV------------KSTGCIPDVATYNFLLDAYGKSGK 835
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARADRITPPA 348
D+L +YK M H N H +I +AG V + L++ ++ ++ D +P A
Sbjct: 836 IDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRD-FSPTA 891
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLK-QQGQKPSATTYGLVMEVMLAC 105
E + L PD+V YN ++N + + E A + ++K +G P TY ++ +
Sbjct: 986 ELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIA 1045
Query: 106 GKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G + + ++Q++ + PN + L+ GK + A + + M G + Y
Sbjct: 1046 GMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTY 1105
Query: 165 YDL 167
L
Sbjct: 1106 EQL 1108
>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
Length = 1023
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 127/287 (44%), Gaps = 15/287 (5%)
Query: 29 VIDSMRSLPKKKFKTGTLERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG 87
+ID M + +G E R L PD V YN++++ + + + + +++K
Sbjct: 139 MIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMS 198
Query: 88 QKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAV 146
+P TY ++ GK EFFR++++S + PN ++Y LV+ +E +A+
Sbjct: 199 CEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAL 258
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
DM R G+V + Y L C G +A D++ +V + VV+YT LI
Sbjct: 259 KFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGL 318
Query: 207 LDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
D I+ A +F +M PNL + ++ +++ + A++L EM
Sbjct: 319 CDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEM--------- 369
Query: 266 EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
K + PD+ + T + + ++ + ++V M G+ N
Sbjct: 370 ---KGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANT 413
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 131/306 (42%), Gaps = 17/306 (5%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R+ P N +L+ R + +G + + G KP+ TY ++++ M G
Sbjct: 93 RVFPKTRSCNGLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAA 152
Query: 112 YEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
F +++ + IP+ + Y +++ + G+ D+ V E+M+ Y L C
Sbjct: 153 SGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINC 212
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPN 229
C GK + L ++ + KP VVSY+ L+ A +Q A + M+ PN
Sbjct: 213 FCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPN 272
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
T +V AY + G +A +L EM++ + E+ ++ T+ ++D
Sbjct: 273 EHTYTSLVDAYCKIGNLSDAFRLADEMSQ----VGVEW--------NVVTYTALIDGLCD 320
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE-LLEITWEHLARADRITPPA 348
+R + E ++ +M+ G+ N + +I +A ++ LE+ E R I P
Sbjct: 321 VERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRG--IKPDL 378
Query: 349 LIKERF 354
L+ F
Sbjct: 379 LLYGTF 384
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 1/160 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P+ Y ++++A + AF + ++ Q G + + TY +++ + +
Sbjct: 269 LVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAE 328
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F K V IPN +Y L++ + D A+ +++M+ RGI LY L
Sbjct: 329 ELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSL 388
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
C K E A + M+++ + K YT L+ A S N
Sbjct: 389 CGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSEN 428
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 82/205 (40%), Gaps = 37/205 (18%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG----------------LV 98
P++ Y A+++ V+ K + A +L ++K +G KP YG +V
Sbjct: 341 PNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVV 400
Query: 99 MEVMLACG-KYN------LVYEFFRKVQKSYIP-------------NALAYKVLVNTLWR 138
M M G K N L+ +F+ S A+ + VL++ L +
Sbjct: 401 MNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCK 460
Query: 139 EGKTDEAVSAVEDMERR-GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV 197
+A+ + G+ +AA+Y + LC + E A +++ + P
Sbjct: 461 NKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRT 520
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQM 222
+YT LI L GN+ A + ++M
Sbjct: 521 AYTSLIDGKLKQGNVVQALALRDKM 545
>gi|293335157|ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
gi|224029903|gb|ACN34027.1| unknown [Zea mays]
gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein ZEAMMB73_160132 [Zea mays]
Length = 819
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 152/343 (44%), Gaps = 54/343 (15%)
Query: 2 SSYPDTVAYRSIAVTL---GQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIV 58
+ +PD V Y SI + GQA + K +FD++ + + P+IV
Sbjct: 325 TCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMVA------------------EGVRPNIV 366
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
YNA+L A A + LKQ G +P +Y ++ + E F ++
Sbjct: 367 SYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEM 426
Query: 119 QKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+K+ PN ++Y L++ G EA+S + +ME+ GI ++ L + G+C
Sbjct: 427 RKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDV---ISISTLLTACGRC 483
Query: 178 EEALMQMDKICKVANKPLV----VSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVT 232
++ L ++D I A + V+Y I + L G+ + A ++ M+ P+ VT
Sbjct: 484 KQ-LTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVKPDAVT 542
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE--------YDKKGLV----------- 273
NI++ + G + E++K F++M + + H+ +E Y K+G +
Sbjct: 543 YNILISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYSSVICSYVKQGKLTEAASTFNSMK 602
Query: 274 ----IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
PD+ T+ T++ A + + W ++K M ++G +A
Sbjct: 603 ETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENNGTQPDA 645
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/308 (21%), Positives = 137/308 (44%), Gaps = 19/308 (6%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
++ W R +P+ YN++++A R QW A ++ +++ PS TTY V+ A
Sbjct: 179 MQEW--RCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQRAAIPPSRTTYNNVINACGAA 236
Query: 106 GKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G + E +K+ ++ + P+ + + ++++ + +A++ E M+ +
Sbjct: 237 GNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTM 296
Query: 165 YDLARCLCSAGKCEEALMQMDKI--CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+ CL G EA+ + + + P VV+YT ++ + G +N +F+ M
Sbjct: 297 NIVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFDIM 356
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
PN+V+ N ++ AY HG+ EA++ F+ + ++ + PDI ++
Sbjct: 357 VAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNG------------LRPDIVSYT 404
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
++L+A + + V+ M + N K ++DA + + I+ H
Sbjct: 405 SLLNAYGRSAQPEKAREVFNEMRKNACKPN-KVSYNALIDAYGSAGMLKEAISLLHEMEQ 463
Query: 342 DRITPPAL 349
D I P +
Sbjct: 464 DGIQPDVI 471
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 121/264 (45%), Gaps = 17/264 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V+Y ++ G AG +KE ++ M ++PD++ + +L
Sbjct: 433 PNKVSYNALIDAYGSAGMLKEAISLLHEME---------------QDGIQPDVISISTLL 477
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
AC R KQ +L K +G + + Y + L+ G Y + ++ +
Sbjct: 478 TACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVK 537
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+A+ Y +L++ + G+ E++ EDM I + +Y + GK EA
Sbjct: 538 PDAVTYNILISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYSSVICSYVKQGKLTEAAST 597
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLE 242
+ + + P V++YT LI+A D G+ + A +F +M+N + P+ + C+ +++A +
Sbjct: 598 FNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENNGTQPDAIVCSSLMEALNK 657
Query: 243 HGLFEEAMKLFQEMAEDSNHINRE 266
G E ++L + M + +N++
Sbjct: 658 GGQPERVLQLIEFMKQKKIQLNQK 681
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 104/219 (47%), Gaps = 12/219 (5%)
Query: 95 YGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDME 153
YG+++ + K + F ++Q+ PN Y L++ R G+ A++ ++DM+
Sbjct: 156 YGMMIRLHARHNKVDQARGLFFEMQEWRCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQ 215
Query: 154 RRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQ 213
R I S Y ++ +AG ++AL K+ + P ++++ ++ A +
Sbjct: 216 RAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYS 275
Query: 214 NAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGL 272
A F MK+ +P+ T NI++ ++ GL+ EA++LF M E ++
Sbjct: 276 KAIAYFEIMKSSKVAPDTCTMNIVIHCLVKIGLYGEAIELFNSMRE----------RRTT 325
Query: 273 VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
PD+ T+ +++ + + + ++ + V+ M+ G+ N
Sbjct: 326 CHPDVVTYTSIMYSYSVCGQAENCKAVFDIMVAEGVRPN 364
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 14/190 (7%)
Query: 97 LVMEVMLACGKYNLVYEF-FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERR 155
L+ E+ ++ + V+ F + K Q++Y Y +++ R K D+A +M+
Sbjct: 123 LIREIAISGSLKHAVHVFRWMKNQENYCARNDIYGMMIRLHARHNKVDQARGLFFEMQEW 182
Query: 156 GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA 215
+ Y L AG+ A+ MD + + A P +Y +I AC +GN + A
Sbjct: 183 RCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQRAAIPPSRTTYNNVINACGAAGNWKKA 242
Query: 216 AYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI 274
+ +M +N P+L+T NI++ A+ + +A+ F+ M K V
Sbjct: 243 LELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIM------------KSSKVA 290
Query: 275 PDIYTFNTML 284
PD T N ++
Sbjct: 291 PDTCTMNIVI 300
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/161 (18%), Positives = 67/161 (41%), Gaps = 16/161 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + S+ L + G + + +I+ M+ +++ + Y ++
Sbjct: 643 PDAIVCSSLMEALNKGGQPERVLQLIEFMK---------------QKKIQLNQKAYFEII 687
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
++C + W+ A +++ L S T ++ + CG+ + + F K+ S
Sbjct: 688 SSCTMLRDWKTASQIIEHLDSSLSSISFGTLNHILNFLGKCGRTESMMKLFYKMVTSCST 747
Query: 125 NALA-YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
L+ Y +L+ L GK + V ++ ME G+ + +Y
Sbjct: 748 VGLSTYTILLRNLLIVGKWRKYVEVLQWMEDAGVCPTLYMY 788
>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
Length = 924
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 132/305 (43%), Gaps = 31/305 (10%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
++V YN ++ R E AF ++++ G P TYG ++ + G+ +
Sbjct: 277 NVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLL 336
Query: 116 RKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
++ +PN + Y L++ R+G DEA V++M G+ + Y +L R LC
Sbjct: 337 DEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKL 396
Query: 175 GKCEEA---LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
G+ A L QM KI +A+ ++Y +I+ L N + A + N+M K SPN+
Sbjct: 397 GRMGRASRILKQMTKIGYMAD---TMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNV 453
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN--------REYDKKGL---------- 272
T +I++ + G E A L ++M D N Y ++G
Sbjct: 454 YTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKK 513
Query: 273 -----VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
+ PD+Y +N+++ + + D+ Y ML G N + +I S AG
Sbjct: 514 MTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGN 573
Query: 328 VELLE 332
+E E
Sbjct: 574 LEKAE 578
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 94/437 (21%), Positives = 168/437 (38%), Gaps = 63/437 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y S+ + L G + E + D M LE+ +P+ Y ++
Sbjct: 521 PDLYCYNSLIIGLSNVGKMDEAIEYYDEM------------LEKG---FQPNDFTYGGLI 565
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ E A +L Q+ G P+ Y ++E V + ++K +
Sbjct: 566 HGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLM 625
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y ++++ L G AVS + +E+ G+V + +Y L C A E+A+
Sbjct: 626 PDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGL 685
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS---PNLVTCNIMVKAY 240
+D++ K +P + Y LI S +I +A IFN + C PN VT ++ Y
Sbjct: 686 LDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSI--ICKGLPPNCVTYTTLIDGY 743
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ G +A+ L+ EM + V PD + ++ + C+ +
Sbjct: 744 CKAGDIRDAIDLYNEMLTEG------------VAPDAFVYSVLAAGCSNSGDLQQALFIT 791
Query: 301 KRMLHHGL----HFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCN 356
+ M+ G FN H + GK++ + + H+ I P L E
Sbjct: 792 EEMIARGYAIISSFNTLVH-----GFCKRGKLQ-ETVKFLHVMMDKDIVPSLLTVENIVI 845
Query: 357 RLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTR 416
L G A +H + +++ ++N+ H D L L + + +
Sbjct: 846 GL-----GEAGKLSEAHTI----------FVELQQKNASHRDTDHLSSLF----TDMINQ 886
Query: 417 NGSPYPVLQNLISS-CK 432
P V+ N+I S CK
Sbjct: 887 GLVPLDVIHNMIQSHCK 903
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 135/296 (45%), Gaps = 15/296 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PD+ Y+ ++ A + + E A V++++++ G + TY ++ + G +
Sbjct: 239 ISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAF 298
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ ++++ +P+ Y ++N L + G+ D+A +++M G++ + +Y L
Sbjct: 299 GYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGF 358
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNL 230
G +EA + ++ +P ++Y LI+ G + A+ I QM +
Sbjct: 359 MRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADT 418
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T N++++ +L EEA L EM +KG + P++YT++ +++
Sbjct: 419 MTYNLVIEGHLRQHNKEEAFLLLNEM------------RKGGISPNVYTYSIIINGLCQI 466
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
+ + ++M+ GL NA + +I R G L T + + R + +TP
Sbjct: 467 GESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTR-ENLTP 521
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/328 (21%), Positives = 139/328 (42%), Gaps = 34/328 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMR--SLPKKKFKTGTL-----ERWDPR------ 52
+ V Y ++ L +AG I+E F M L F G + +R P
Sbjct: 277 NVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLL 336
Query: 53 -------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
L P++VVY+ +++ +R+ + AF +++++ G +P+ TY ++ +
Sbjct: 337 DEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKL 396
Query: 106 GKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G+ +++ K Y+ + + Y +++ R+ +EA + +M + GI + Y
Sbjct: 397 GRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTY 456
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-K 223
+ LC G+ E A ++++ KP Y LI G+ A +M +
Sbjct: 457 SIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTR 516
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
+P+L N ++ G +EA++ + EM E KG P+ +T+ +
Sbjct: 517 ENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLE-----------KGFQ-PNDFTYGGL 564
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFN 311
+ + + E + +ML+ GL+ N
Sbjct: 565 IHGYSMAGNLEKAEQLLHQMLNSGLNPN 592
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/360 (23%), Positives = 149/360 (41%), Gaps = 54/360 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLERWDPR 52
P+ V Y ++ + G+ E F ++ M + L + K G + R
Sbjct: 346 PNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRI 405
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L+ D + YN V+ +R+ E AF +L ++++ G P+ TY +++ +
Sbjct: 406 LKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQ 465
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ + + PNA Y L++ REG A ++ M R +
Sbjct: 466 IGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYC 525
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L L + GK +EA+ D++ + +P +Y GLI +GN++ A + +QM
Sbjct: 526 YNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQML 585
Query: 224 N-----------------FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED---SNHI 263
N F S NL + +K+ LE GL + +L+ + + S H+
Sbjct: 586 NSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDN-RLYGIVIHNLSSSGHM 644
Query: 264 NREY------DKKGLVIPDIYTFNTMLDA-CAA---EKRWDDLELVYKRMLHHGLH-FNA 312
+K GLV PD + +++ C A EK L+ + K+ + G+ +NA
Sbjct: 645 QAAVSVLSVIEKNGLV-PDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNA 703
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 78/380 (20%), Positives = 149/380 (39%), Gaps = 37/380 (9%)
Query: 3 SYPDTVAYRSIAVTLGQAGHIKELFDVIDSM-RSLPKKKFKTGTLERW----DPRLEPDI 57
S P A+ +AV+L AG + ++D M R+ P ++ R D P
Sbjct: 116 SAPAPDAFAHLAVSLCAAGLYPQANGLLDQMIRAYPTPPLVLSSVHRALSGSDQGRRP-- 173
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
VV + +++ + + V+ +K G PS +++ +L +L+++
Sbjct: 174 VVLDVLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGF 233
Query: 118 VQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
++ + I P+ Y L+ + + A VE+M G + Y L LC AG
Sbjct: 234 MEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGA 293
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS---PNLVTC 233
EEA ++ P +Y +I G A + ++M C+ PN+V
Sbjct: 294 IEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMS--CAGLMPNVVVY 351
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR-EYDK--KGLV----------------- 273
+ ++ ++ G +EA K+ +EM+ N+ YD +GL
Sbjct: 352 STLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTK 411
Query: 274 ---IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ D T+N +++ + ++ L+ M G+ N + +I + G+ E
Sbjct: 412 IGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESER 471
Query: 331 LEITWEHLARADRITPPALI 350
E + AD + P A +
Sbjct: 472 ASGLLEQMI-ADGLKPNAFV 490
>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
[Oryza sativa Japonica Group]
Length = 571
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 124/279 (44%), Gaps = 21/279 (7%)
Query: 36 LPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY 95
L +K F++ L R R+ PDI +N V++ R Q A V + +K G PS TY
Sbjct: 174 LAEKAFRS-ALRR---RVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATY 229
Query: 96 GLVMEVMLACGKYNLVYE----FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVED 151
+++ G +Y V+ P A+ + VL+N + T AV E+
Sbjct: 230 NSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEE 289
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
M+++GI S Y L LCS GK EE + M+++ + P +++ +++ G
Sbjct: 290 MKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGM 349
Query: 212 IQNAA-YIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270
+ +A +I + P++V NI++ Y G E+AM + + MA KK
Sbjct: 350 MADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMA-----------KK 398
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH 309
G + P++ T+N ++ + W + M G+
Sbjct: 399 G-ISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIE 436
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 121/281 (43%), Gaps = 26/281 (9%)
Query: 7 TVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNA 66
V Y S+ L G ++E +++ M L L P+ + + VL
Sbjct: 299 VVTYNSLISGLCSEGKVEEGVKLMEEMEDLG---------------LSPNEITFGCVLKG 343
Query: 67 CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PN 125
++ A + + ++ +P Y ++++V GK + K I PN
Sbjct: 344 FCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPN 403
Query: 126 ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMD 185
Y L+ R G A +++M+ +GI Y L LC G+ +A+ +D
Sbjct: 404 VTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLD 463
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC--SPNLVTCNIMVKAYLEH 243
++ +V +P ++Y +IQ D GNI++A I +M+ C N+VT N+ +K + +
Sbjct: 464 EMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEK-CRKRANVVTYNVFIKYFCQI 522
Query: 244 GLFEEAMKLFQEMAED---SNHINREYDKKGLV----IPDI 277
G +EA L EM + N I E K+G++ PDI
Sbjct: 523 GKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKGYTPDI 563
>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 654
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 128/297 (43%), Gaps = 27/297 (9%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
LER ++ PD+V YNA++NA V+ ++ A + ++ +G PS TY +++
Sbjct: 282 LER--KKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQ 339
Query: 106 GKYNLV-YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
+ + + F+ K P+ + + L+ R + D+ + + +M G+V + Y
Sbjct: 340 NRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITY 399
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK- 223
L C G A + ++ P VV+ L+ D+G +++A +F M+
Sbjct: 400 TTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQK 459
Query: 224 -----------NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGL 272
N P++ T NI++ + G F EA +L++EM
Sbjct: 460 SKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRG------------ 507
Query: 273 VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++PD T+N+++ + R D+ ++ M N +I +AG+V+
Sbjct: 508 IVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 564
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 125/264 (47%), Gaps = 9/264 (3%)
Query: 53 LEPDIVVY-----NAVLNACVRRKQWEGAFWVLQQ-LKQQGQKPSATTYGLVMEVMLACG 106
++P++V++ ++N +W A +LQ+ L+++ P TY ++ + G
Sbjct: 246 IKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEG 305
Query: 107 KYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K+ E + + + + IP+ + Y +++ ++ + D A M +G +
Sbjct: 306 KFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFN 365
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KN 224
L C A + ++ + + ++ + ++YT LI G++ A + +M +
Sbjct: 366 TLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSS 425
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
PN+VTCN ++ ++G ++A+++F+ M + I+ + G V PD+ T+N ++
Sbjct: 426 GVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNG-VEPDVQTYNILI 484
Query: 285 DACAAEKRWDDLELVYKRMLHHGL 308
E ++ + E +Y+ M H G+
Sbjct: 485 SGLINEGKFLEAEELYEEMPHRGI 508
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 103/251 (41%), Gaps = 25/251 (9%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + L + + Y +++ + A +LQ++ G P+ T +++ + G
Sbjct: 386 EMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNG 445
Query: 107 KYNLVYEFFRKVQKSYI------------PNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
K E F+ +QKS + P+ Y +L++ L EGK EA E+M
Sbjct: 446 KLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH 505
Query: 155 RGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQN 214
RGIV Y + LC + +EA D + + P VV++T LI +G + +
Sbjct: 506 RGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDD 565
Query: 215 AAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV 273
+F +M + N +T ++ + + G A+ +FQEM V
Sbjct: 566 GLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASG------------V 613
Query: 274 IPDIYTFNTML 284
PD T ML
Sbjct: 614 YPDTITIRNML 624
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/296 (21%), Positives = 129/296 (43%), Gaps = 39/296 (13%)
Query: 23 IKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQ 82
IK L D ID G + R P P ++ + ++ VR + + + ++
Sbjct: 56 IKGLEDAIDLF----------GDMVRSRPL--PSVIDFCKLMGVVVRMGRLDVVISLHRK 103
Query: 83 LKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGK 141
++ + +A ++ ++M+ +C K F K+ K + P + + L++ L E +
Sbjct: 104 MEMRRVPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDR 163
Query: 142 TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
EA+ M + +V + L LC G+ EA+ +D++ + +P ++Y
Sbjct: 164 ISEALDLFHQMCKPNVV----TFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGT 219
Query: 202 LIQACLDSGNIQNAAYIFNQMK--NFCSPNLV-------TCNIMVKAYLEHGLFEEAMKL 252
++ G+ +A + +M+ + PN+V TC M+ + G + EA +L
Sbjct: 220 IVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTC--MINGFCSSGRWSEAQQL 277
Query: 253 FQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
QEM E + PD+ T+N +++A E ++ + E +Y ML G+
Sbjct: 278 LQEMLERKK-----------ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGI 322
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 68/150 (45%), Gaps = 16/150 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT+ Y S+ L + + E + DSM S K F P++V + ++
Sbjct: 510 PDTITYNSVIHGLCKQSRLDEATQMFDSMGS---KSFS------------PNVVTFTTLI 554
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + + + + ++ ++G +A TY ++ G N + F+++ S +
Sbjct: 555 NGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVY 614
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDME 153
P+ + + ++ LW + + AV+ +ED++
Sbjct: 615 PDTITIRNMLTGLWSKEELKRAVAMLEDLQ 644
>gi|422293946|gb|EKU21246.1| hypothetical protein NGA_2092600 [Nannochloropsis gaditana CCMP526]
Length = 659
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 129/289 (44%), Gaps = 19/289 (6%)
Query: 51 PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
P +E D+V + + AC + ++W A VL++++ +G +P ++ M+ + G+Y+L
Sbjct: 220 PLIEVDVVGFTMAIKACGQARRWREALGVLREMQARGLRPDLVSFNTAMDALGKAGQYDL 279
Query: 111 VYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
E F +++ + PN ++Y ++ R G D A + +M+ + + Y +
Sbjct: 280 ALELFTEIEDHGFAPNLVSYNTAIHACGRAGMVDRAHELLREMQGLSVRPDSVSYNTVMA 339
Query: 170 CLCSAGKCEEALMQMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCS 227
+ + AL + ++ + P ++SY + C +G + A + + +
Sbjct: 340 AFAKKNQWKAALELLAEMKEAPGVDPDLISYNTAMHVCAKAGRWERATELLTEALGQGLQ 399
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P++V+ N ++ A G + +A+ LF M E V PD +FNT + AC
Sbjct: 400 PDVVSYNTVMHACGRAGEYLQALDLFGMMEEVG------------VAPDRVSFNTAMHAC 447
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLE 332
+W + + M + N K + + RAG+ +EL+E
Sbjct: 448 NRALKWQAALQILREMEARSIAPNVKSYTIAVDACGRAGEWERALELME 496
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/333 (22%), Positives = 141/333 (42%), Gaps = 30/333 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V+Y + G+AG + +++ M+ L + PD V YN V+
Sbjct: 294 PNLVSYNTAIHACGRAGMVDRAHELLREMQGLS---------------VRPDSVSYNTVM 338
Query: 65 NACVRRKQWEGAFWVLQQLKQQ-GQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSY 122
A ++ QW+ A +L ++K+ G P +Y M V G++ E + + +
Sbjct: 339 AAFAKKNQWKAALELLAEMKEAPGVDPDLISYNTAMHVCAKAGRWERATELLTEALGQGL 398
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ ++Y +++ R G+ +A+ ME G+ + A K + AL
Sbjct: 399 QPDVVSYNTVMHACGRAGEYLQALDLFGMMEEVGVAPDRVSFNTAMHACNRALKWQAALQ 458
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NLVTCNIMVKAYL 241
+ ++ + P V SYT + AC +G + A + +M+ P N+ T + A
Sbjct: 459 ILREMEARSIAPNVKSYTIAVDACGRAGEWERALELMEEMEVRGVPANVHTYTAAMDACC 518
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G + + L +EM D KG V P++ ++ +DA +WD V +
Sbjct: 519 RGGAVDRVLVLLEEM-----------DGKG-VEPNVVSYTIAMDAMNRVGKWDRASAVLE 566
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEIT 334
+M+ GL ++ + + A RAG E +T
Sbjct: 567 QMVQRGLRLDSVSYRTALSTAGRAGDEEGERLT 599
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 22/244 (9%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKK-------------FKTGTLE 47
+S PD+V+Y ++ + K +++ M+ P K G E
Sbjct: 325 LSVRPDSVSYNTVMAAFAKKNQWKAALELLAEMKEAPGVDPDLISYNTAMHVCAKAGRWE 384
Query: 48 R--------WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM 99
R L+PD+V YN V++AC R ++ A + +++ G P ++ M
Sbjct: 385 RATELLTEALGQGLQPDVVSYNTVMHACGRAGEYLQALDLFGMMEEVGVAPDRVSFNTAM 444
Query: 100 EVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
K+ + R+++ +S PN +Y + V+ R G+ + A+ +E+ME RG+
Sbjct: 445 HACNRALKWQAALQILREMEARSIAPNVKSYTIAVDACGRAGEWERALELMEEMEVRGVP 504
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
+ Y C G + L+ ++++ +P VVSYT + A G A+ +
Sbjct: 505 ANVHTYTAAMDACCRGGAVDRVLVLLEEMDGKGVEPNVVSYTIAMDAMNRVGKWDRASAV 564
Query: 219 FNQM 222
QM
Sbjct: 565 LEQM 568
>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Glycine max]
Length = 546
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 110/222 (49%), Gaps = 4/222 (1%)
Query: 48 RWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ-QGQKPSATTYGLVMEVMLACG 106
+ D +P++ V+N ++ + + AF ++++++ + P+ TY +M+ + G
Sbjct: 224 KRDLTRKPNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNG 283
Query: 107 KYNLVYEFFRKV--QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
+ ++ F ++ + +P+ L Y VL+N R GK D A + ++ M+ G + Y
Sbjct: 284 RVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNY 343
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK- 223
L LC GK E+A + +I KP V+YT LI +G A + +MK
Sbjct: 344 SALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKE 403
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
N C + VT N+++ G FEEA+ + +++ + ++N+
Sbjct: 404 NGCQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNK 445
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 91/186 (48%), Gaps = 15/186 (8%)
Query: 3 SYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNA 62
SYP+ V Y ++ L + G +KE FD+ + M S + PD + YN
Sbjct: 265 SYPNLVTYSTLMDGLCRNGRVKEAFDLFEEMVS--------------RDHIVPDPLTYNV 310
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY 122
++N R + + A V+Q +K G P+ Y +++ + GK +++ S
Sbjct: 311 LINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSG 370
Query: 123 I-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+ P+A+ Y L+N L R GK+DEA+ +E+M+ G + + L LC GK EEAL
Sbjct: 371 LKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEAL 430
Query: 182 MQMDKI 187
++K+
Sbjct: 431 DMVEKL 436
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 96/201 (47%), Gaps = 16/201 (7%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YP+ Y ++ L + G +++ V+ ++ L+PD V Y ++
Sbjct: 337 YPNVYNYSALVDGLCKVGKLEDAKGVLAEIKG---------------SGLKPDAVTYTSL 381
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSY 122
+N R + + A +L+++K+ G + + T+ +++ + GK+ + K+ Q+
Sbjct: 382 INFLCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGV 441
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
N +Y++++N+L ++ + A + M RRG A +L CLC AG ++A +
Sbjct: 442 YLNKGSYRIVLNSLTQKCELKRAKELLGLMLRRGFQPHYATSNELLVCLCKAGMVDDAAV 501
Query: 183 QMDKICKVANKPLVVSYTGLI 203
+ + ++ +P + ++ LI
Sbjct: 502 ALFDLVEMGFQPGLETWEVLI 522
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/321 (21%), Positives = 142/321 (44%), Gaps = 57/321 (17%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQ-GQKPSATTYGLVMEVMLACGKYNLV----- 111
+ +++ ++ R K + A + + +Q G + + TY +++ + C ++ V
Sbjct: 91 ISHDSAIDLIKREKDPQHALNIFNMVSEQNGFQHNNATYATILDKLARCNNFHAVDRVLH 150
Query: 112 ---YE-------FFRKVQKSYIPNALAYKVL-----VNTLWREGKTDEAVSAVEDMERRG 156
YE F + K + ++L K+L + + RE + +A+S ++
Sbjct: 151 QMTYETCKFHEGIFVNLMKHFSKSSLHEKLLHAYFSIQPIVREKPSPKALSTCLNL---- 206
Query: 157 IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
++ S + DLAR L K + + KP V + L++ +G++ +A
Sbjct: 207 LLDSNRV--DLARKLLLHAKRD-----------LTRKPNVCVFNILVKYHCKNGDLDSAF 253
Query: 217 YIFNQMKN--FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI 274
I +M+N F PNLVT + ++ +G +EA LF+EM ++R++ ++
Sbjct: 254 EIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKEAFDLFEEM------VSRDH-----IV 302
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----- 329
PD T+N +++ + D V + M +G + N + ++ + GK+E
Sbjct: 303 PDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGV 362
Query: 330 LLEITWEHLARADRITPPALI 350
L EI L + D +T +LI
Sbjct: 363 LAEIKGSGL-KPDAVTYTSLI 382
>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 906
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/367 (22%), Positives = 160/367 (43%), Gaps = 44/367 (11%)
Query: 23 IKELFDVIDSMRSLPKKKFK---------TGTLE---RWDPRL-----------EPDIVV 59
+KE F VI+ MR K KF+ G L R DP L E ++ +
Sbjct: 184 LKEAFGVIEMMR---KFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHL 240
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
+ ++ R + + A +L ++K Y + ++ GK ++ ++FF +++
Sbjct: 241 FTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMK 300
Query: 120 -KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ +P+ + Y L+ L + + DEAV E+++ V Y + SAGK +
Sbjct: 301 AQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFD 360
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVK 238
EA +++ + P V++Y ++ G ++ A I ++M+ +PNL T NI++
Sbjct: 361 EAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAAPNLTTYNILID 420
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G E A+K+ M E + P+I T N M+D ++ D+
Sbjct: 421 MLCKAGELEAALKVQDTMKEAG------------LFPNIMTVNIMIDRLCKAQKLDEACS 468
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI----TPPALIKERF 354
++ + H +++ +I R G+V+ +E + +D+I +LI+ F
Sbjct: 469 IFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFF 528
Query: 355 -CNRLEN 360
C R E+
Sbjct: 529 KCGRKED 535
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/346 (21%), Positives = 150/346 (43%), Gaps = 34/346 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
PD+ + S+ LG+ G + + + + + M SL + FK G E
Sbjct: 480 PDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKI 539
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ PD+++ N+ ++ + + E + +++K QG P +Y +++ ++
Sbjct: 540 YKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVK 599
Query: 105 CGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G Y+ F ++++ + + LAY +++ + GK D+A +E+M+ +G+ +
Sbjct: 600 AGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVT 659
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-M 222
Y + L + +EA M ++ + VV Y+ LI G I A I + M
Sbjct: 660 YGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELM 719
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ +PN T N ++ A ++ +EA FQ M K P+ T++
Sbjct: 720 QKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNM------------KNLKCSPNAMTYSI 767
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
M++ ++++ + ++ M GL N + MI ++AG V
Sbjct: 768 MINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNV 813
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 75/333 (22%), Positives = 145/333 (43%), Gaps = 38/333 (11%)
Query: 3 SYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNA 62
S P AY ++ + G AG E + SL +++ + G + P ++ YN
Sbjct: 339 SVPCVYAYNTMIMGYGSAGKFDEAY-------SLLERQKRKGCI--------PSVIAYNC 383
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY 122
+L R+ + E A + +++Q P+ TTY ++++++ G+ E KVQ +
Sbjct: 384 ILTCLGRKGKVEEALRIHDEMRQDAA-PNLTTYNILIDMLCKAGEL----EAALKVQDTM 438
Query: 123 -----IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
PN + ++++ L + K DEA S ++ + + + L L G+
Sbjct: 439 KEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRV 498
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIM 236
++A +K+ P VV YT LIQ G ++ I+ +M CSP+L+ N
Sbjct: 499 DDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSY 558
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ + G E+ LF+E+ +GLV PD+ +++ ++ +
Sbjct: 559 MDCVFKAGEVEKGRALFEEIK-----------AQGLV-PDVRSYSILIHGLVKAGFSRET 606
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++ M GLH + + +I ++GKV+
Sbjct: 607 YKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVD 639
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 133/315 (42%), Gaps = 34/315 (10%)
Query: 41 FKTGTLERWDPRLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSA 92
FK G +E+ E PD+ Y+ +++ V+ + + ++K+QG
Sbjct: 563 FKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDV 622
Query: 93 TTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVED 151
Y V++ GK + Y+ +++ K P + Y +V+ L + + DEA E+
Sbjct: 623 LAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEE 682
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
+ G+ + +Y L G+ +EA + ++++ + P ++ L+ A + +
Sbjct: 683 AKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEE 742
Query: 212 IQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS---NHINREY 267
I A F MKN CSPN +T +IM+ F +A +QEM + N+I
Sbjct: 743 IDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTT 802
Query: 268 DKKGLV--------------------IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
GL +PD +N M++ ++ + D +V++ G
Sbjct: 803 MIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKG 862
Query: 308 LHFNAKRHLRMILDA 322
N+K + ++LDA
Sbjct: 863 CRVNSKTCV-VLLDA 876
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/266 (19%), Positives = 121/266 (45%), Gaps = 21/266 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y S+ L + + E + + + +S+ ++ ++V+Y++++
Sbjct: 655 PTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIG---------------VDLNVVIYSSLI 699
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ + + + A+ +L++L Q+G P++ T+ +++ ++ + + F+ ++
Sbjct: 700 DGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCS 759
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PNA+ Y +++N L K ++A ++M+++G+ + Y + L AG EA
Sbjct: 760 PNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGL 819
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
D+ P Y +I+ + +A +F + + C N TC +++ A +
Sbjct: 820 FDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVVLLDALHK 879
Query: 243 HGLFEEAM---KLFQEMAEDSNHINR 265
E+A + +EMA+ S H R
Sbjct: 880 ADCLEQAAIVGAVLREMAK-SQHATR 904
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/252 (19%), Positives = 112/252 (44%), Gaps = 17/252 (6%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D +AY ++ ++G + + + +++ M++ L+P +V Y +V++
Sbjct: 621 DVLAYNTVIDGFCKSGKVDKAYQLLEEMKT---------------KGLQPTVVTYGSVVD 665
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIP 124
+ + + A+ + ++ K G + Y +++ G+ + Y ++ QK P
Sbjct: 666 GLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTP 725
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N+ + L++ L + + DEA ++M+ +A Y + LC K +A +
Sbjct: 726 NSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFW 785
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEH 243
++ K KP ++YT +I +GN+ A +F++ K + P+ N M++
Sbjct: 786 QEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSA 845
Query: 244 GLFEEAMKLFQE 255
+A +F+E
Sbjct: 846 NKAMDAYIVFEE 857
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 88/228 (38%), Gaps = 32/228 (14%)
Query: 97 LVMEVMLACGKYNLVYEFFR----KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM 152
+++ VM N+ +++FR K Q+++ P Y + + R D +E+M
Sbjct: 102 VIVGVMKRLKDVNVAFQYFRWVERKTQQAHCPEV--YNAFLMVMARTRNLDYLEQILEEM 159
Query: 153 ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI 212
G S + +L + K +EA ++ + K +P +YT LI A +
Sbjct: 160 SVAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRP 219
Query: 213 QNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN------- 264
+F+QM+ N+ +V+ + G + A+ L EM +S +
Sbjct: 220 DPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVC 279
Query: 265 -----------------REYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
E +GLV PD T+ T++ +R D+
Sbjct: 280 IDCFGKVGKVDMAWKFFHEMKAQGLV-PDDVTYTTLIGVLCKARRLDE 326
>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 827
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 133/304 (43%), Gaps = 36/304 (11%)
Query: 54 EPDIVVYNAVLNACVRRKQ-WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+P ++ YN +LN + W ++ +K G P TY +++C + +Y
Sbjct: 249 KPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYN----TLISCCRRGSLY 304
Query: 113 E----FFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
E F +++ S + P+ + + L++ + + EA+ +++ME G S Y L
Sbjct: 305 EEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSL 364
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-C 226
G EA+ D++ + KP V +YT L+ +G + A IF +M+ C
Sbjct: 365 ISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGC 424
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQE------------------------MAEDSNH 262
PN+ T N ++K + G F E MK+F+E M + +
Sbjct: 425 KPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSG 484
Query: 263 INREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA 322
+ +E + G V P+ TFNT++ A + + VYKRML G+ + + ++
Sbjct: 485 VFKEMKRAGFV-PERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAAL 543
Query: 323 SRAG 326
+R G
Sbjct: 544 ARGG 547
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 119/274 (43%), Gaps = 25/274 (9%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD YN +++ C R +E A V +++K G P T+ +++V + E
Sbjct: 286 PDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEV 345
Query: 115 FRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++++ S + P+ + Y L++ R+G EA+ + M +GI Y L
Sbjct: 346 LKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEK 405
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
AG E A+ ++ KP + ++ LI+ + G +F +++ C+P++VT
Sbjct: 406 AGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVT 465
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMA--------EDSNHINREYDKKGL------------ 272
N ++ + ++G+ E +F+EM + N + Y + G
Sbjct: 466 WNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRML 525
Query: 273 ---VIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
V PD+ ++N +L A A W+ E V+ M
Sbjct: 526 EAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEM 559
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 139/352 (39%), Gaps = 69/352 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKK-FKT--------GTLER---- 48
PD V + ++ GQ G E+ V M+ +P++ F T G+ ++
Sbjct: 461 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAV 520
Query: 49 ----WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY--------- 95
+ + PD+ YNAVL A R WE + V ++K KP+ TY
Sbjct: 521 YKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYAN 580
Query: 96 ----------------GLVMEV-------MLACGKYNLVYEF---FRKVQKSYIPNALAY 129
GL V +L K +L+ E F +++K P+
Sbjct: 581 SKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFEELKKKGSPDLSTL 640
Query: 130 KVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK 189
++ R +A + M G S A Y L + E + + +I
Sbjct: 641 NAMIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILA 700
Query: 190 VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEE 248
KP ++SY +I A +G +++A+ IF+ MK + P+++T N V +Y LFE+
Sbjct: 701 KGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNTFVASYAADSLFED 760
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELV 299
A+ + + M + N+ T+N+++D C +R D + V
Sbjct: 761 AIGVVRYMIKHGCKRNQN------------TYNSIVDGYCKHSRRADAIMFV 800
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/306 (19%), Positives = 122/306 (39%), Gaps = 43/306 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y S+ + G ++E ++ D M + ++PD+ Y +L
Sbjct: 356 PSIVTYNSLISAYARDGLLREAMELKDQM---------------VEKGIKPDVFTYTTLL 400
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ + E A + +++ G KP+ T+ ++++ G++ + + F +++ +
Sbjct: 401 SGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCA 460
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + L+ + G E ++M+R G V + L G ++A+
Sbjct: 461 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAV 520
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
++ + P + SY ++ A G + + +F +MK+ C PN +T ++ AY
Sbjct: 521 YKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYAN 580
Query: 243 -------HGLFEEAMKLFQE-----------------MAEDSNHINREYDKKGLVIPDIY 278
H L EE E + ++ H E KKG PD+
Sbjct: 581 SKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFEELKKKG--SPDLS 638
Query: 279 TFNTML 284
T N M+
Sbjct: 639 TLNAMI 644
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 14/204 (6%)
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N V++ L +EGK A S + ++ + G Y L S G+ +A++
Sbjct: 181 NCSVVAVIITMLGKEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVF 240
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGN--IQNAAYIFNQMKNFCSPNLVTCNIMVKAYLE 242
K+ + KP +++Y ++ G + + + + +P+ T N ++
Sbjct: 241 KKMEEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRR 300
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
L+EEA ++F+EM K PD TFNT+LD +R + V K
Sbjct: 301 GSLYEEAAQVFEEM------------KLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKE 348
Query: 303 MLHHGLHFNAKRHLRMILDASRAG 326
M G + + +I +R G
Sbjct: 349 MEFSGFSPSIVTYNSLISAYARDG 372
>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
Length = 748
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/342 (23%), Positives = 133/342 (38%), Gaps = 65/342 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y S+ AG KE V M S L P +V N+ +
Sbjct: 225 PNNKTYNSLIYGYSTAGMWKESVRVFKEMSS---------------SGLIPCVVNCNSFI 269
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEFFRKVQKSYI 123
+A R + + A + + +G KP+ +Y ++ A G + N+ V K +
Sbjct: 270 HALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIV 329
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + +L+N R G D+A+ EDM+ +G++ + + LC G+ ++AL +
Sbjct: 330 PNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHK 389
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN----------FCS------ 227
+ + + P Y LIQ C + G + A + ++M N F S
Sbjct: 390 FNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLF 449
Query: 228 ---------------------PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
PN+VT N +++ Y G EEA L MA
Sbjct: 450 KEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG------ 503
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+ P+ Y + T++D R DD V++ MLH G+
Sbjct: 504 ------IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGV 539
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 115/285 (40%), Gaps = 19/285 (6%)
Query: 29 VIDSMRSLPKKKFKTGTLERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG 87
+ID R + + + R L PD+ YN +++ + + + A+ + ++ +Q
Sbjct: 128 LIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQS 187
Query: 88 QKPSATTYGLVMEVMLACGKYNLVYE---FFRKVQKSYIPNALAYKVLVNTLWREGKTDE 144
P TY +++ + C +V + V PN Y L+ G E
Sbjct: 188 VSPDVVTYNSLIDGL--CKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKE 245
Query: 145 AVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204
+V ++M G++ LC + +EA D + KP ++SY+ L+
Sbjct: 246 SVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLH 305
Query: 205 ACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
G N + N M PN NI++ AY G+ ++AM +F++M
Sbjct: 306 GYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDM------- 358
Query: 264 NREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
KG+ IPD TF T++ + R DD + M+ G+
Sbjct: 359 ----QNKGM-IPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGV 398
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 103/265 (38%), Gaps = 25/265 (9%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD V + V+++ R + + A + G PS Y +++ G+ E
Sbjct: 365 PDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKEL 424
Query: 115 FRKVQKSYIP--NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++ IP + ++N L++EG+ E ++ M + G + + L C
Sbjct: 425 ISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYC 484
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
G EEA +D + + +P Y L+ +G I +A +F M P V
Sbjct: 485 LVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSV 544
Query: 232 TCNIMVKAYLEHGLFE-----EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
NI++ HGLF+ A K+F EM E ++ I T+ +L
Sbjct: 545 LYNIIL-----HGLFQARRTTAAKKMFHEMIESGTTVS------------IQTYGVVLGG 587
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFN 311
D+ ++ +++ + F+
Sbjct: 588 LCRNNCTDEANMLLEKLFAMNVKFD 612
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/252 (19%), Positives = 109/252 (43%), Gaps = 16/252 (6%)
Query: 90 PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSA 148
P+ TY ++++ + L F ++ ++ + P+ +Y L++ +EG+ D+A
Sbjct: 120 PTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYEL 179
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
M + + Y L LC + ++ ++++ +P +Y LI
Sbjct: 180 FYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYST 239
Query: 209 SGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
+G + + +F +M + P +V CN + A H +EA +F M
Sbjct: 240 AGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPK----- 294
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA-SRAG 326
P+I +++T+L AAE + ++ + M+ G+ N R ++++A +R G
Sbjct: 295 -------PNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPN-HRFFNILINAYARCG 346
Query: 327 KVELLEITWEHL 338
++ + +E +
Sbjct: 347 MMDKAMLIFEDM 358
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 111/278 (39%), Gaps = 58/278 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V + S+ G+++E F ++D+M S+ +EP+ +Y ++
Sbjct: 471 PNVVTFNSLMEGYCLVGNMEEAFALLDAMASI---------------GIEPNCYIYGTLV 515
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + + + A V + + +G KP++ Y +++
Sbjct: 516 DGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIIL------------------------- 550
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ L++ +T A +M G S Y + LC +EA M +
Sbjct: 551 ---------HGLFQARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLL 601
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
+K+ + K ++++ +I A L G Q A +F + + P + T N+M+ ++
Sbjct: 602 EKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKE 661
Query: 244 GLFEEAMKLFQEM-----AEDS---NHINREYDKKGLV 273
+EEA LF + A DS NHI R KK V
Sbjct: 662 ESYEEADNLFISVEKSGRAPDSRLLNHIVRMLLKKAEV 699
>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
Length = 1056
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/305 (21%), Positives = 132/305 (43%), Gaps = 28/305 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y ++ L ++G +++ +++ M + L PD++ +N+VL
Sbjct: 471 PTLVTYNTLVTGLSKSGMVRDALGLLEFM---------------IESGLSPDVITFNSVL 515
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + ++ A V ++ ++G +P+ TY +++ + K + + K V+
Sbjct: 516 DGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCR 575
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + Y +V+ L + G+ ++AV + M G + A Y L + EA+
Sbjct: 576 ANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGL 635
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ ++ + P VV+YT L SG A I + M C+PN +T + +V +
Sbjct: 636 LREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCK 695
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G EA+ F++MA D +V P + ++ ++D R D+ +R
Sbjct: 696 AGRVTEALGYFEKMARDE-----------VVAPHVIAYSALIDGLCKAGRIDEAYEFLER 744
Query: 303 MLHHG 307
M+ G
Sbjct: 745 MIRAG 749
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/348 (21%), Positives = 147/348 (42%), Gaps = 37/348 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTL------- 46
+TV Y ++ L + G +++ V+ MR +L FK L
Sbjct: 577 NTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLL 636
Query: 47 -ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
E + P +V Y + + R +++ A +L + +G P+A TY +++ +
Sbjct: 637 REMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKA 696
Query: 106 GKYNLVYEFFRKVQKSYI--PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ +F K+ + + P+ +AY L++ L + G+ DEA +E M R G +
Sbjct: 697 GRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVT 756
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ L LC AG+ + L + + K + +Y +I A G A + +MK
Sbjct: 757 FSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMK 816
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ N VT I++KA + +EA+ F + ED D ++NT
Sbjct: 817 THGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCR--------------DEISYNT 862
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
++ + A +R + + + M+ G +A ++ ++ +AG E+
Sbjct: 863 LITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEV 910
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 153/358 (42%), Gaps = 42/358 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKKFKTGTLE------RWDPR--- 52
P+ + + I L + G I+ F V+D M +P + T L R D
Sbjct: 104 PELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFF 163
Query: 53 --------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
PD V YN +++ + + E A VLQ L + P+ T+ + ++ +
Sbjct: 164 FQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSK 223
Query: 105 CGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERR-GIVGSAA 162
G YEFF + Q PN + Y L++ L + GK D A+ + D + G+ ++
Sbjct: 224 AGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFAFSS 283
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
L + LC A + EEA+ + + V N VV + L+ + + A +F+ M
Sbjct: 284 LLHG----LCQAHRLEEAIQLLKAMPCVPN---VVCFNSLMNGLCQARRVDEAFELFDVM 336
Query: 223 K-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
K + CS +++T NI++K + + + E H+ +G P++ TF+
Sbjct: 337 KESGCSADVITYNILLKGLCK----------LRRIPEAYRHVELMRRTEGCS-PNVVTFS 385
Query: 282 TMLDACAAEKRWDDLELVYKRMLH-HGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
T++ R + VY+RM+ G+ N + ++ +AG LE +E +
Sbjct: 386 TLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQM 443
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 107/242 (44%), Gaps = 15/242 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
P +V Y+ V++ R + + +L+++ +G P+A TY ++ +L G+ +
Sbjct: 32 FRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAF 91
Query: 113 EFFRKVQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++ + P L + +++ L +EG+ + A V++M RG V ++ L L
Sbjct: 92 SLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHAL 151
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C G+ +EA ++ + P V+Y ++ +G ++ A + + ++F SP +
Sbjct: 152 CELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTV 211
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAA 289
T I V + G A + F M + V P+ T++ ++D C A
Sbjct: 212 FTFTIAVDGLSKAGNLTGAYEFFDSMPQTG------------VSPNTVTYDALIDGLCKA 259
Query: 290 EK 291
K
Sbjct: 260 GK 261
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 119/277 (42%), Gaps = 16/277 (5%)
Query: 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR 116
+V YN ++N + + AF ++ Q G +P+ TY V++ + + + +
Sbjct: 1 MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60
Query: 117 KVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
++ + PNA+ Y LVN L +G+ EA S +E M G + + + LC G
Sbjct: 61 EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEG 120
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ--MKNFCSPNLVTC 233
+ E A +D++ P V +T L+ A + G + A + F Q + F +P+ VT
Sbjct: 121 EIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGF-TPDAVTY 179
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N MV + G E A + Q +AE + P ++TF +D +
Sbjct: 180 NTMVDGLYKAGRLEAAGMVLQLLAESFSS------------PTVFTFTIAVDGLSKAGNL 227
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ M G+ N + +I +AGK+++
Sbjct: 228 TGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDI 264
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 120/272 (44%), Gaps = 19/272 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ V YN ++NA + + + + AF +L+++ G P T+GL+++ + G+ +
Sbjct: 69 PNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRV 128
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ V + ++P+ + VL++ L G+ DEA + + G A Y + L
Sbjct: 129 VDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYK 188
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
AG+ E A M + + + + P V ++T + +GN+ A F+ M + SPN VT
Sbjct: 189 AGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVT 248
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGL-----------------VIP 275
+ ++ + G + A+ L ++ + GL +P
Sbjct: 249 YDALIDGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVP 308
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
++ FN++++ +R D+ ++ M G
Sbjct: 309 NVVCFNSLMNGLCQARRVDEAFELFDVMKESG 340
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 117/296 (39%), Gaps = 53/296 (17%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE- 113
P +V YN ++ + A +L+ + + G P T+ V++ + C + ++
Sbjct: 471 PTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGL--CKEQRILDAH 528
Query: 114 --FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F R +++ PN + Y L++ L + K DEA+ + M G
Sbjct: 529 NVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELG--------------- 573
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C A V+Y+ ++ L G +++A + QM++ C P+
Sbjct: 574 CRAN--------------------TVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDA 613
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N ++ + + EA+ L +EM E H P + T+ T+
Sbjct: 614 VTYNTLIDGFFKRQRLREAVGLLREMLEAGFH------------PSVVTYTTLCHGLCRS 661
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
R+D+ + M G NA + ++ +AG+V +E +AR + + P
Sbjct: 662 GRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAP 717
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 130/305 (42%), Gaps = 46/305 (15%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V +N+++N + ++ + AF + +K+ G TY ++++ + K + E
Sbjct: 308 PNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLC---KLRRIPEA 364
Query: 115 FRKVQ-----KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM-ERRGIVGSAALYYDLA 168
+R V+ + PN + + L+ L G+ ++A E M GI + Y L
Sbjct: 365 YRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLL 424
Query: 169 RCLCSAG---KCEEALMQM-DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
LC AG + E+ QM ++ + ++ S I + F M
Sbjct: 425 EGLCKAGDSRRLEQCFEQMLEREWRSSS----------------SWPIHSPEVDF-LMVQ 467
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
C P LVT N +V + G+ +A+ L + M E + PD+ TFN++L
Sbjct: 468 VCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESG------------LSPDVITFNSVL 515
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEITWEHLAR 340
D E+R D V+KR L G N + +I S+ K ++LL E R
Sbjct: 516 DGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCR 575
Query: 341 ADRIT 345
A+ +T
Sbjct: 576 ANTVT 580
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 77/368 (20%), Positives = 153/368 (41%), Gaps = 45/368 (12%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRS----------------LPKKKFKT---G 44
+P V Y ++ L ++G E +++D M + L K T G
Sbjct: 645 HPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALG 704
Query: 45 TLERW--DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
E+ D + P ++ Y+A+++ + + + A+ L+++ + G+ P T+ +++ +
Sbjct: 705 YFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGL 764
Query: 103 LACGKYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
G+ + E F ++ + AY ++N +G+ A + +E+M+ GI +
Sbjct: 765 CDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNT 824
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
+ + + LC + +EA+ I + +SY LI + + S + A +
Sbjct: 825 VTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDE--ISYNTLITSLVASRRSEQALELLRA 882
Query: 222 M-KNFCSPNLVTCNIM--VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
M + SP+ CN M + + G E A KL QEM + PD+
Sbjct: 883 MVADGGSPD--ACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHS------------PDLR 928
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
T+ M+ + K+ ++ ML L +A + +I +A KV + W+ L
Sbjct: 929 TYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKV---DDAWK-L 984
Query: 339 ARADRITP 346
R+ I P
Sbjct: 985 LRSSGIEP 992
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 95/205 (46%), Gaps = 9/205 (4%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D + YN ++ + V ++ E A +L+ + G P A Y VM+ + G + +
Sbjct: 856 DEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLL 915
Query: 116 RKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
++++ + + P+ Y ++++ L + + A E+M R+ + A +Y L C A
Sbjct: 916 QEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKA 975
Query: 175 GKCEEA--LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLV 231
K ++A L++ I +P + Y+ ++ + + A + +MK+ C P +
Sbjct: 976 DKVDDAWKLLRSSGI-----EPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIH 1030
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEM 256
+ AY+ G +EA+KL ++
Sbjct: 1031 IWTSLATAYVAEGRVDEAVKLVNDL 1055
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 78/170 (45%), Gaps = 4/170 (2%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD Y V++ + E A +LQ+++ +G P TY +++ + + L ++
Sbjct: 890 PDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDY 949
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F + ++K+ P+A+ Y L++ + K D+A + GI + +Y + LC
Sbjct: 950 FEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKL---LRSSGIEPTITMYSTMVDSLCK 1006
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
++AL + ++ +P + +T L A + G + A + N ++
Sbjct: 1007 NRGTDKALEVIREMKSKNCEPGIHIWTSLATAYVAEGRVDEAVKLVNDLQ 1056
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/177 (19%), Positives = 72/177 (40%), Gaps = 17/177 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y ++ L +AG + ++ MRS PD+ Y ++
Sbjct: 890 PDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHS---------------PDLRTYTIMI 934
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + KQ A +++ ++ KP A Y +++ K + ++ R P
Sbjct: 935 SGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLR--SSGIEP 992
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
Y +V++L + TD+A+ + +M+ + ++ LA + G+ +EA+
Sbjct: 993 TITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAYVAEGRVDEAV 1049
>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
Length = 1443
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 92/395 (23%), Positives = 162/395 (41%), Gaps = 43/395 (10%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD + YN +++AC + + A V +++ +P TY ++ V CGK
Sbjct: 289 LRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAE 348
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F++ V+K + P+A+ Y L+ +EG + E++ + G Y +
Sbjct: 349 LMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMY 408
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
G+ + AL D++ + P V+YT L+ + I A + +M + P L
Sbjct: 409 GKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTL 468
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT + ++ AY + G ++A + F M E V PD + MLD A
Sbjct: 469 VTFSALICAYAKSGRQDDAERTFDRMVESG------------VKPDRLAYLVMLDVFARS 516
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRA---------GKVELLEITWEH---- 337
L ++Y+ M+ G + L +L A+ A G ++ +E +E
Sbjct: 517 DETRKLMVLYRAMIKDG--YKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPLV 574
Query: 338 ----LARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPE--FSRNAWLKFFK 391
L +A+ I+ A + +R C + D S +S L ++ G E S W++
Sbjct: 575 ISSILIKAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLSLLEWIRQHV 634
Query: 392 ENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQN 426
NS + L+ E S L +NG +Q
Sbjct: 635 PNSHN--------LISECSIMLLCKNGKIVDAIQE 661
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 106/239 (44%), Gaps = 20/239 (8%)
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGI----VGSAALYYDLARCLCSAGKCEEALMQM 184
+ ++ R G+ D+A ++ M + I V L A+ C A AL +
Sbjct: 224 FNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGV--ALELL 281
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
++ + +P ++Y LI AC N+ +A +F +M + C P+L T N MV +
Sbjct: 282 HEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRC 341
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G +EA +F+E+ E KG PD T+N++L A A E + +E V + +
Sbjct: 342 GKAQEAELMFKELVE-----------KGFQ-PDAVTYNSLLYAFAKEGDVERVERVCEEL 389
Query: 304 LHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKD 362
+ G + + MI + G+++L ++ + RA TP A+ + L D
Sbjct: 390 VKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEM-RAIGCTPDAVTYTVLVDSLGKMD 447
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + +LG+ I E V++ M D L+P +V ++A++
Sbjct: 431 PDAVTYTVLVDSLGKMDRISEAGKVLEEMA---------------DAGLKPTLVTFSALI 475
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
A + + + A ++ + G KP Y ++++V + + +R ++ Y
Sbjct: 476 CAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYK 535
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDME 153
P+ Y+VL+ L + + DE ++DME
Sbjct: 536 PDDGLYQVLLAALAKGNEHDEIEGVIQDME 565
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 122/290 (42%), Gaps = 26/290 (8%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME--VMLAC--GK-Y 108
EPD ++L+A + + E +L+ ++Q ++ L+ E +ML C GK
Sbjct: 601 EPDGKSLLSILDAYEKMGKHEKGLSLLEWIRQH----VPNSHNLISECSIMLLCKNGKIV 656
Query: 109 NLVYEFFRKV---QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ + E+ RK + S+ + Y+ L+ L EA DM+ GIV S ++
Sbjct: 657 DAIQEYSRKQMLKRGSFGQDCDLYEYLITYLEEAELFPEACQVFCDMQFLGIVPSQKVFP 716
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVS-YTGLIQACLDSGNIQNAAYIFNQMKN 224
C G E A MD + ++S +I+A Q A +K
Sbjct: 717 SFIFQCCRLGFPETAYQLMDDAARSDISLNILSCRVAMIEAYGKLKLWQQAENFVKGLKQ 776
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
+ N ++ AY E GL+E A +F M KKG +P + + N M+
Sbjct: 777 ESGVDRRIWNALIHAYAESGLYEHARAIFDIMI-----------KKG-PLPTVESVNGMM 824
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEI 333
A + R D+L +V + + + + L M+ ++AG V E+++I
Sbjct: 825 RALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKI 874
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 101/248 (40%), Gaps = 24/248 (9%)
Query: 22 HIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQ 81
H + +FD++ K G L P + N ++ A + + + + V+Q
Sbjct: 800 HARAIFDIM----------IKKGPL--------PTVESVNGMMRALIVDGRLDELYVVVQ 841
Query: 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREG 140
+L+ K S +T L++E G V + + ++ + Y+PN Y+++++ L
Sbjct: 842 ELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNK 901
Query: 141 KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYT 200
+ + V +ME G + L G + + I + +P +Y
Sbjct: 902 RFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYN 961
Query: 201 GLIQACLDSGNI---QNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
LI + S N + ++ K +P L + I++ A + L+E+A LF+EM
Sbjct: 962 TLI--VMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMR 1019
Query: 258 EDSNHINR 265
+NR
Sbjct: 1020 TKGYRLNR 1027
>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 130/305 (42%), Gaps = 29/305 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D + Y ++ + G ++E F + M K G +EPD YN +++
Sbjct: 525 DKITYNTLISGCCKEGKVEEGFKLRGEM-------VKQG--------IEPDTFTYNLLIH 569
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP- 124
R + + A + + K + P+ TYG++++ K + F ++ +
Sbjct: 570 GMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLEL 629
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N++ Y L+ R G T EA +DM +GI + A Y L +C+ G+ E+A +
Sbjct: 630 NSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLI 689
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
D++ K P VV YT LI G + + +M ++ PN +T +M+ Y +
Sbjct: 690 DEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKS 749
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G + A KL EM KG+V PD T+N + + E + ++ + M
Sbjct: 750 GDMKTAAKLLHEMV-----------GKGIV-PDTVTYNVLTNGFCKEGKIEEGFKICDYM 797
Query: 304 LHHGL 308
GL
Sbjct: 798 SQEGL 802
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 102/245 (41%), Gaps = 15/245 (6%)
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALA 128
R + A V + L +G P+ T ++ ++ + Y F +++ P+
Sbjct: 189 RNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYL 248
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
+ +N + GK ++A+ DME+ G+ + Y +L LC G +EA +K+
Sbjct: 249 FSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMV 308
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLF 246
K +++Y+ LI + A + + K F +PN V N ++ Y + G
Sbjct: 309 KDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGF-TPNEVVYNTLIDGYCKMGNL 367
Query: 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306
+A+++ +M S IN P+ T N+++ + + E + + ML
Sbjct: 368 GDALRIRGDMV--SKGIN----------PNSVTLNSIIQGFCKIGQMEQAECILEEMLSR 415
Query: 307 GLHFN 311
G N
Sbjct: 416 GFSIN 420
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/308 (20%), Positives = 125/308 (40%), Gaps = 25/308 (8%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF-FRKV 118
+ +++ ++E A L+++ + +P+ ++ + GK++ E FR +
Sbjct: 424 FTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLL 483
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+K + N + L++ L + G EAV ++ M RG V Y L C GK E
Sbjct: 484 EKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVE 543
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
E ++ K +P +Y LI G + A ++N+ K+ PN+ T +M+
Sbjct: 544 EGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMI 603
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHIN--------REYDKKGLVI--------------- 274
Y + EE KLF E+ + +N R Y + G +
Sbjct: 604 DGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIP 663
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEIT 334
P T+++++ R +D + + M GL N + +I + G+++ +
Sbjct: 664 PTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNV 723
Query: 335 WEHLARAD 342
+ ++ D
Sbjct: 724 LQEMSSYD 731
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/342 (19%), Positives = 141/342 (41%), Gaps = 29/342 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L + G++ E F +K K G + ++ Y+ ++
Sbjct: 279 PNVVTYNNLIHGLCKHGNLDEAF-------RFKEKMVKDG--------VNATLITYSVLI 323
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N ++ +++ A VL++ ++G P+ Y +++ G V K
Sbjct: 324 NGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGIN 383
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN++ ++ + G+ ++A +E+M RG + + + LC + E AL
Sbjct: 384 PNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRF 443
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI-FNQMKNFCSPNLVTCNIMVKAYLE 242
+ ++ +P T L+ G +A + F ++ NLVT N ++ +
Sbjct: 444 LREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCK 503
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +EA++L ++M E +G V+ D T+NT++ C E + ++ +
Sbjct: 504 TGNMQEAVRLLKKMLE-----------RGFVL-DKITYNTLISGCCKEGKVEEGFKLRGE 551
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI 344
M+ G+ + + +I R GK++ W D +
Sbjct: 552 MVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLV 593
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 126/306 (41%), Gaps = 22/306 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PD+ +++ +NA + + E A + +++ G P+ TY ++ + G + +
Sbjct: 242 VSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAF 301
Query: 113 EFFRKVQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F K+ K + L Y VL+N L + K +EA S +++ +G + +Y L
Sbjct: 302 RFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGY 361
Query: 172 CSAGKCEEAL-MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSP 228
C G +AL ++ D + K N P V+ +IQ G ++ A I +M + F S
Sbjct: 362 CKMGNLGDALRIRGDMVSKGIN-PNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGF-SI 419
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
N ++ + FE A++ +EM + P+ T++
Sbjct: 420 NPGAFTTIIHWLCMNSRFESALRFLREMLLRNMR------------PNDGLLTTLVGGLC 467
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEITWEHLARADRI 344
E + D ++ R+L G N +I + G V LL+ E D+I
Sbjct: 468 KEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKI 527
Query: 345 TPPALI 350
T LI
Sbjct: 528 TYNTLI 533
>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 1032
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 139/343 (40%), Gaps = 69/343 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL-------ERWDPRLE- 54
P Y + L + +++ +V+D M + F GTL R++ +E
Sbjct: 449 PSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIEL 508
Query: 55 ----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV--- 101
PD+ YN ++ R K+ E A +L + ++G KP+A TYG + +
Sbjct: 509 LKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSK 568
Query: 102 -------------MLACGKY--NLVYEFFRK------------------VQKSYIPNALA 128
ML+ G N++Y K ++K IP+ A
Sbjct: 569 SGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRA 628
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
Y ++++L + GKT EA+ + G+V LY L C G E+A D++
Sbjct: 629 YSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEML 688
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFE 247
P +V Y LI G + A +F++++ P++VT + ++ Y + G
Sbjct: 689 HNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLT 748
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
EA KLF EM KG + PD Y + ++D C E
Sbjct: 749 EAFKLFDEMIS-----------KG-ISPDGYIYCILIDGCGKE 779
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 121/275 (44%), Gaps = 13/275 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PDI Y+A++++ + + + A V + + G P Y ++ G
Sbjct: 622 LIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKAS 681
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ + ++ + I PN + Y L+N L + G+ +A +++E + +V Y +
Sbjct: 682 QLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGY 741
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV 231
C +G EA D++ P Y LI C GN++ A +F++ + +L
Sbjct: 742 CKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLS 801
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
N ++ ++ +HG EA +LF +M DKK + P+I T+ ++DA +
Sbjct: 802 AFNSLIDSFCKHGKVIEARELFDDMV----------DKK--LTPNIVTYTILIDAYGKAE 849
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
++ E ++ M + N + ++L ++ G
Sbjct: 850 MMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIG 884
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 138/328 (42%), Gaps = 31/328 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
LEPD YN +++ ++ A +L ++K + PS TY +++ +
Sbjct: 412 LEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKAN 471
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E ++ ++ + PN Y L+ +E + + A+ ++ M G++ Y L L
Sbjct: 472 EVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGL 531
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C A K EEA M + + + KP +Y I SG IQ A F M + PN
Sbjct: 532 CRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNN 591
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAE------------------------DSNHINRE 266
V I++K + + G EA+ F+ M E ++ + +
Sbjct: 592 VIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLK 651
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+ K G V+PD++ +N+++ E + +Y MLH+G++ N + +I + G
Sbjct: 652 FLKTG-VVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLG 710
Query: 327 KV----ELLEITWEHLARADRITPPALI 350
+V EL + E D +T +I
Sbjct: 711 EVTKARELFDEIEEKDLVPDVVTYSTII 738
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/325 (19%), Positives = 135/325 (41%), Gaps = 49/325 (15%)
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L + +P++ YNA + + + A V + + ++G P TY L+++
Sbjct: 264 VLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCK 323
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
+ F + S + PN Y L++ +EG +EA+ ++M RG+ +
Sbjct: 324 QKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVT 383
Query: 164 YYDLARCLCSAGKCEEALM----------------------------QMDKICKVANK-- 193
Y + + AG+ +A+ M K C++ +
Sbjct: 384 YNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMK 443
Query: 194 -----PLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFE 247
P +Y+ LI S ++Q A + +QM +N PN+ ++KAY++ +E
Sbjct: 444 ARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYE 503
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
A++L + M + V+PD++ +N ++ K+ ++ +++ M G
Sbjct: 504 MAIELLKIMIANG------------VLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKG 551
Query: 308 LHFNAKRHLRMILDASRAGKVELLE 332
+ NA + I S++G++++ E
Sbjct: 552 IKPNAHTYGAFINLYSKSGEIQVAE 576
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 94/234 (40%), Gaps = 15/234 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFW-VLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
P ++ N ++ ++ G FW V + + P TY V++ G
Sbjct: 205 PTLICCNNLMRDLLKANMM-GLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKM 263
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++K PN Y + L + G DEA+ + M +G+ Y L C
Sbjct: 264 VLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCK 323
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+ +EA + + + P +YT LI + GNI+ A I ++M N+VT
Sbjct: 324 QKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVT 383
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
N M+ + G +AM LF EM GL PD +T+N ++D
Sbjct: 384 YNAMIGGIAKAGEMAKAMSLFNEML-----------MAGLE-PDTWTYNLLIDG 425
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 116/283 (40%), Gaps = 41/283 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLERW--- 49
PD V Y +I ++G++ E F + D M S L K G LE+
Sbjct: 729 PDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSL 788
Query: 50 ----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
+ + +N+++++ + + A + + + P+ TY ++++ A
Sbjct: 789 FHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILID---AY 845
Query: 106 GKYNLVYE----FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
GK ++ E F ++ IPN L Y L+ + + G + +S +DME RGI A
Sbjct: 846 GKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDA 905
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS-------YTGLIQACLDSGNIQN 214
Y +A C GK EAL K+ NK LV + LI I
Sbjct: 906 IAYGVMASAYCKEGKSLEAL-------KLLNKSLVEGIKLEDDVFDALIFHLCKEKQIST 958
Query: 215 AAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+ ++M K S + TCN ++ + + G +EA K+ M
Sbjct: 959 VLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVM 1001
>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
Length = 472
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 113/257 (43%), Gaps = 14/257 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
PD+V YN V++ + A + +++ Q+G P TY V+ + +
Sbjct: 182 SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEA 241
Query: 114 FFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F R+ V K +PN Y L+ G+ EAV ++M R I+ L LC
Sbjct: 242 FLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLC 301
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
GK +EA D + P V SY ++ G + + +F+ M + +P+
Sbjct: 302 KYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFY 361
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N+ +KAY G+ ++AM +F EM R++ K PD+ T+ T++ A
Sbjct: 362 TFNVQIKAYANCGMLDKAMIIFNEM--------RDHGVK----PDVVTYRTVIAALCRIG 409
Query: 292 RWDDLELVYKRMLHHGL 308
+ DD + +M+ G+
Sbjct: 410 KMDDAMEKFNQMIDQGV 426
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 123/279 (44%), Gaps = 16/279 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ--KPSATTYGLVMEVMLACGKYNLVY 112
PD+ YN +L + + + A +L+ + + G P Y V++ G N
Sbjct: 146 PDVFSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKAC 205
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F++ VQ+ P+ + Y +V+ L + D+A + + M + ++ + Y +L
Sbjct: 206 DLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGY 265
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
S G+ +EA+ ++ + + P VV+ + L+ + G I+ A +F+ M +P++
Sbjct: 266 SSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDV 325
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+ NIM+ Y G + LF M D + PD YTFN + A A
Sbjct: 326 FSYNIMLNGYATKGCLVDMTDLFDLMLGDG------------IAPDFYTFNVQIKAYANC 373
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
D +++ M HG+ + + +I R GK++
Sbjct: 374 GMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMD 412
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 16/175 (9%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S PD V + +L + G IKE DV D+M + PD+ YN
Sbjct: 285 SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ---------------NPDVFSYN 329
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
+LN + + + G P T+ + ++ CG + F +++
Sbjct: 330 IMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDH 389
Query: 122 YI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
+ P+ + Y+ ++ L R GK D+A+ M +G+ Y L + C+ G
Sbjct: 390 GVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHG 444
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/152 (19%), Positives = 63/152 (41%), Gaps = 1/152 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V + ++ + + + + A V + +GQ P +Y +++ G + +
Sbjct: 288 PDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDL 347
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F + I P+ + V + G D+A+ +M G+ Y + LC
Sbjct: 348 FDLMLGDGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCR 407
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
GK ++A+ + +++ P +Y LIQ
Sbjct: 408 IGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQG 439
>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
Length = 442
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/331 (22%), Positives = 144/331 (43%), Gaps = 29/331 (8%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P+ Y + TL + G +++ V+D M L R PD+V Y
Sbjct: 1 MPVQPNAYTYNPLIHTLCERGQVRDALSVLDDM------------LCRG---CAPDVVTY 45
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-Q 119
N +L A + + + A ++ ++ +G P+ TY ++M+ M G + E R +
Sbjct: 46 NILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPS 105
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
P+ + Y ++ L + +A V +M R + A + + LC G ++
Sbjct: 106 HGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQ 165
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVK 238
A+ ++K+ K +V+Y +I + N+ A + ++MK++ C P++VT N ++K
Sbjct: 166 AIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLK 225
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ +A +L M ++ +PD TFNT++ + D
Sbjct: 226 GLCSAARWVDAEELMDNMTQNG------------CLPDNVTFNTLIGFLCQKGLMVDAIE 273
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
V+K+M G N+ + +I ++A K++
Sbjct: 274 VFKQMPDKGCTPNSITYSTIISGLAKATKLD 304
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 113/265 (42%), Gaps = 17/265 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y + + G + D ++ +R+LP K P V YN VL
Sbjct: 75 PNNVTYNVLMDGMCGEGDVD---DALELLRNLPSHGCK------------PSTVNYNTVL 119
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
++W A ++ ++ ++ P+ T+ +V+ + G + K+ K
Sbjct: 120 KGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCT 179
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + Y ++N L + D A+ + M+ G Y L + LCSA + +A
Sbjct: 180 ANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEEL 239
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
MD + + P V++ LI G + +A +F QM + C+PN +T + ++ +
Sbjct: 240 MDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAK 299
Query: 243 HGLFEEAMKLFQEMAEDSNHINREY 267
++A++LF EM + ++ Y
Sbjct: 300 ATKLDQALELFNEMGHKGFNPDKIY 324
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 90/209 (43%), Gaps = 20/209 (9%)
Query: 1 MSSY---PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDI 57
M SY PD V Y ++ L A + +++D+M + G L PD
Sbjct: 208 MKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMT-------QNGCL--------PDN 252
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
V +N ++ ++ A V +Q+ +G P++ TY ++ + K + E F +
Sbjct: 253 VTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNE 312
Query: 118 V-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
+ K + P+ + Y++L L + +EA+ V ++ GI LY + LC GK
Sbjct: 313 MGHKGFNPDKI-YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGK 371
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQA 205
E A+ M + P ++Y LI+
Sbjct: 372 TEFAIDIMAYMVSSGCMPDDLTYVILIEG 400
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 82/197 (41%), Gaps = 17/197 (8%)
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219
+A Y L LC G+ +AL +D + P VV+Y L++A + A +
Sbjct: 6 NAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELI 65
Query: 220 NQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
+ M+ C+PN VT N+++ G ++A++L + + P
Sbjct: 66 DLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCK------------PSTV 113
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG----KVELLEIT 334
+NT+L + +RW D + + ML N +I R G ++LLE
Sbjct: 114 NYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKM 173
Query: 335 WEHLARADRITPPALIK 351
+H A+ +T A+I
Sbjct: 174 SKHGCTANIVTYNAIIN 190
>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 146/335 (43%), Gaps = 54/335 (16%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V Y ++ G +KE +++ M KT + P++ YN +++
Sbjct: 233 DVVTYNTLIYGFCIVGKLKEAIGLLNEMV------LKT---------INPNVYTYNILVD 277
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY--- 122
A + + + A VL + + KP TY +M+ Y LVYE +K Q +
Sbjct: 278 ALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMD------GYFLVYEV-KKAQHVFNAM 330
Query: 123 -----IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
P+ Y +L+N + DEA++ ++M ++ +V Y L LC +G+
Sbjct: 331 SLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRI 390
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIM 236
+D++ V++Y+ LI +G++ A +FN+MK+ PN+ T I+
Sbjct: 391 SYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTIL 450
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHIN--------REYDKKGLV--------------- 273
+ + G ++A ++FQ++ H+N + K+GL+
Sbjct: 451 LDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGC 510
Query: 274 IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
IP+ +TF T++ A + D E + ++M+ GL
Sbjct: 511 IPNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 545
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 129/322 (40%), Gaps = 50/322 (15%)
Query: 46 LERWDPRL-EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L + D RL +PD+V+YN +++A + + A+ + ++ +G TY ++
Sbjct: 187 LRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCI 246
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAV-------------- 149
GK + V K+ PN Y +LV+ L +EGK EA S +
Sbjct: 247 VGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVIT 306
Query: 150 ---------------------EDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
M G+ Y L C +EAL ++
Sbjct: 307 YSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMH 366
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NLVTCNIMVKAYLEHGLFE 247
+ P +V+Y+ LI SG I + ++M++ P +++T + ++ ++G +
Sbjct: 367 QKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLD 426
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
A+ LF +M + + P+I+TF +LD R D + V++ +L G
Sbjct: 427 RAIALFNKMKDQE------------IRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKG 474
Query: 308 LHFNAKRHLRMILDASRAGKVE 329
H N + MI + G +E
Sbjct: 475 YHLNVYTYNVMINGHCKQGLLE 496
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 124/299 (41%), Gaps = 39/299 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV ++ L G +K+ D + + + + V Y ++
Sbjct: 127 PDTVTLNTLIKGLCLKGQVKKALHFHDKLLA---------------QGFQLNQVSYATLI 171
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE----FFRKVQK 120
N + A L+++ + KP Y +++ M KY LV E F K
Sbjct: 172 NGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMC---KYQLVSEAYGLFSEMAVK 228
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ + Y L+ GK EA+ + +M + I + Y L LC GK +EA
Sbjct: 229 GISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEA 288
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
+ + K KP V++Y+ L+ ++ A ++FN M +P++ T I++
Sbjct: 289 KSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILING 348
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR----WD 294
+ ++ + +EA+ LF+EM + + ++P I T+++++D R WD
Sbjct: 349 FCKNKMVDEALNLFKEMHQKN------------MVPGIVTYSSLIDGLCKSGRISYVWD 395
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 101/236 (42%), Gaps = 14/236 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PD++ N ++N Q F VL ++ ++G P T +++ + G+
Sbjct: 90 IQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKAL 149
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F K + + + N ++Y L+N + + G T A+ + ++ R +Y + +
Sbjct: 150 HFHDKLLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAM 209
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C EA ++ VV+Y LI G ++ A + N+M +PN+
Sbjct: 210 CKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNV 269
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
T NI+V A + G +EA + M K V PD+ T++T++D
Sbjct: 270 YTYNILVDALCKEGKVKEAKSVLAVML------------KACVKPDVITYSTLMDG 313
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 21/175 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLERW--- 49
P V Y S+ L ++G I ++D+ID MR SL K G L+R
Sbjct: 372 PGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIAL 431
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
D + P+I + +L+ + + + A V Q L +G + TY +++
Sbjct: 432 FNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCK 491
Query: 105 CGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
G K++ + IPNA ++ ++ L+++ + D+A + M RG++
Sbjct: 492 QGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGLL 546
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 47/253 (18%), Positives = 87/253 (34%), Gaps = 59/253 (23%)
Query: 111 VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
V +F R + + P + + ++++ + AVS +E +GI L C
Sbjct: 44 VSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINC 103
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-------- 222
C G+ + KI K P V+ LI+ G ++ A + +++
Sbjct: 104 FCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLN 163
Query: 223 ----------------------------KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
P++V N ++ A ++ L EA LF
Sbjct: 164 QVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFS 223
Query: 255 EMAEDSNH---------------INREYDKKGL--------VIPDIYTFNTMLDACAAEK 291
EMA + + + GL + P++YT+N ++DA E
Sbjct: 224 EMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEG 283
Query: 292 RWDDLELVYKRML 304
+ + + V ML
Sbjct: 284 KVKEAKSVLAVML 296
>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
Length = 746
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 120/283 (42%), Gaps = 27/283 (9%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P V N ++N + + E A +QQ G +P TY + + G +
Sbjct: 253 PTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKV 312
Query: 115 FR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
VQ+ + P+ Y ++VN L + G+ +EA + M RG + + L LCS
Sbjct: 313 MDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCS 372
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
+ EEAL ++ P V ++ LI A G+ Q A +F +MK+ C+P+ VT
Sbjct: 373 GNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVT 432
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMA------------------------EDSNHINREYD 268
N ++ G +A+ L +EM E++ + + D
Sbjct: 433 YNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMD 492
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
+G + + TFNT++D +KR DD + +M+ GL N
Sbjct: 493 LQG-ISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPN 534
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 110/250 (44%), Gaps = 14/250 (5%)
Query: 39 KKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLV 98
K +T E + ++PD+V +N ++ A R Q A +L+++ G P TT+ +
Sbjct: 167 KLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTL 226
Query: 99 MEVMLACGKYNLVYEF-FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
M+ + G R ++ P + VL+N + G+ ++A+ ++ G
Sbjct: 227 MQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGF 286
Query: 158 VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217
Y LC G AL MD + + + P V +Y ++ +G ++ A
Sbjct: 287 EPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKG 346
Query: 218 IFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
I NQM + C P++ T N ++ A EEA+ L R+ KGL PD
Sbjct: 347 ILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDL-----------ARQVTLKGLS-PD 394
Query: 277 IYTFNTMLDA 286
+YTFN +++A
Sbjct: 395 VYTFNILINA 404
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/347 (22%), Positives = 141/347 (40%), Gaps = 30/347 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y + L Q GH+ V+D M E DP D+ YN V+
Sbjct: 288 PDQITYNTFVNGLCQNGHVGHALKVMDVM-----------VQEGHDP----DVFTYNIVV 332
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
N + Q E A +L Q+ ++G P TT+ ++ + + + + R+V K
Sbjct: 333 NCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLS 392
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + +L+N L + G A+ E+M+ G Y L LCS GK +AL
Sbjct: 393 PDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDL 452
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ ++ V+Y +I I+ A +F+QM S N +T N ++ +
Sbjct: 453 LKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCK 512
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
++A +L +M + + P+ T+N++L + + +
Sbjct: 513 DKRIDDANQLISQMISEG------------LQPNNITYNSILTHYCKQGDIKKAADILQT 560
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVEL-LEITWEHLARADRITPPA 348
M +G + + +I +AG+ ++ L++ + R TP A
Sbjct: 561 MTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKA 607
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 90/207 (43%), Gaps = 24/207 (11%)
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ + Y L+N L K + +M RGI + L + LC A + A++ +
Sbjct: 149 DTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLML 208
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
+++ P ++T L+Q ++ G+I+ A + +M CSP VT N+++ Y +
Sbjct: 209 EEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKL 268
Query: 244 GLFEEAMKLF-QEMAE-----------------DSNHINREYDKKGLVI-----PDIYTF 280
G E+A+ QE+A + H+ +++ PD++T+
Sbjct: 269 GRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTY 328
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHG 307
N +++ + ++ + + +M+ G
Sbjct: 329 NIVVNCLCKNGQLEEAKGILNQMVERG 355
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/281 (18%), Positives = 114/281 (40%), Gaps = 28/281 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS--LPKKKFKTGTL--------------ER 48
PD V Y ++ L G + + D++ M S P+ T+ E
Sbjct: 428 PDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEV 487
Query: 49 WDPR----LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+D + + + +N +++ + K+ + A ++ Q+ +G +P+ TY ++
Sbjct: 488 FDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCK 547
Query: 105 CGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + + + + + + Y L+N L + G+T A+ + M +G+ +
Sbjct: 548 QGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKA 607
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQM 222
Y + + L +A+ ++ +V P +Y + + C G+I+ A +M
Sbjct: 608 YNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEM 667
Query: 223 --KNFCSPNLVTCNIMVKAYLEHGL---FEEAMKLFQEMAE 258
K F P + ++ + L G+ F A+++ E A+
Sbjct: 668 VDKGFI-PEFSSFRMLAEGLLNLGMDDYFIRAIEIIIEKAD 707
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 66/163 (40%), Gaps = 27/163 (16%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDV-----IDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
D V Y ++ L +AG + + I MR+ PK Y
Sbjct: 569 DVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPK--------------------AY 608
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML-ACGKYNLVYEFFRK-V 118
N V+ + RR A + +++ + G+ P A TY +V + G ++F + V
Sbjct: 609 NPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMV 668
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
K +IP ++++L L G D + A+E + + +G +
Sbjct: 669 DKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIIEKADLGDS 711
>gi|8778500|gb|AAF79508.1|AC002328_16 F20N2.6 [Arabidopsis thaliana]
Length = 554
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 115/257 (44%), Gaps = 18/257 (7%)
Query: 3 SYPDTV-AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
YP T + + T G+AG +++ + ++ + +K YN
Sbjct: 259 GYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHS---------------YN 303
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQK 120
A+L++ + KQ++ WV +Q+ + G P TY +VM GK + +Y + V+
Sbjct: 304 AILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKD 363
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ P+ Y +L++ L K A++ + M G+ + L L AGK E
Sbjct: 364 GFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEAC 423
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKA 239
MD+ KV P VV YT +I + G ++ A +F +M PN+ T N M++
Sbjct: 424 KYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRG 483
Query: 240 YLEHGLFEEAMKLFQEM 256
+ G F+EA L +EM
Sbjct: 484 FCMAGKFKEACALLKEM 500
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 116/244 (47%), Gaps = 18/244 (7%)
Query: 89 KPSATTYGLVMEVMLACGKYNL---VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEA 145
+P +Y ++ +L +Y L VYE + ++ + P+ L Y +++ +R GKTD
Sbjct: 296 RPYKHSYNAILHSLLGVKQYKLIDWVYE--QMLEDGFTPDVLTYNIVMFANFRLGKTDRL 353
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+++M + G Y L L + K AL ++ + +V +P V+ +T LI
Sbjct: 354 YRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDG 413
Query: 206 CLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
+G ++ Y ++ +K C+P++V +M+ Y+ G E+A ++F+EM E
Sbjct: 414 LSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQ--- 470
Query: 265 REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASR 324
+P+++T+N+M+ ++ + + K M G + N + ++ +
Sbjct: 471 ---------LPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNLKN 521
Query: 325 AGKV 328
AGKV
Sbjct: 522 AGKV 525
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 62/129 (48%), Gaps = 1/129 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+EP ++ + +++ R + E + + + + G P Y +++ ++ G+
Sbjct: 400 VEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAE 459
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F+++ +K +PN Y ++ GK EA + +++ME RG + +Y L L
Sbjct: 460 EMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNL 519
Query: 172 CSAGKCEEA 180
+AGK EA
Sbjct: 520 KNAGKVLEA 528
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V Y ++ + + E A + +++ ++GQ P+ TY ++ GK+
Sbjct: 437 PDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACAL 496
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
++++ + PN + Y LVN L GK EA V+DM +G
Sbjct: 497 LKEMESRGCNPNFVVYSTLVNNLKNAGKVLEAHEVVKDMVEKG 539
>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 860
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 131/282 (46%), Gaps = 17/282 (6%)
Query: 53 LEPDIVVYNAVLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
L+ D + N +L C + E +L ++ + G P+A +Y +V++ +
Sbjct: 188 LKMDQITANTLLKCLCYANRTEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRA 247
Query: 112 YEFFRKVQK---SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
+ + + K + P+ +AY +++ + EG+T +A S +M R+G+ Y +
Sbjct: 248 LDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLII 307
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCS 227
LC A ++A + + ++ +P V+Y+ +I G ++ AA +F +MK
Sbjct: 308 DALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLI 367
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
PN+VTCN + + +HG +EA + F M + PDI+++ T+L
Sbjct: 368 PNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHK------------PDIFSYCTLLHGY 415
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
A+E + D+ ++ M +G+ N +I ++ G V+
Sbjct: 416 ASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVD 457
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 135/328 (41%), Gaps = 34/328 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V S +L + G KE + DSM + K PDI Y +L
Sbjct: 368 PNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHK---------------PDIFSYCTLL 412
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + +K G + + +++ G + F ++Q+ +
Sbjct: 413 HGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVS 472
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG---KCEEA 180
P+ + Y +++T R G+ +A+ M RGI + A+Y + + C G K +E
Sbjct: 473 PDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKEL 532
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKA 239
+ +M I K +P +V ++ +I + G + +A IF+ + P ++T N ++
Sbjct: 533 VSEM--INKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDG 590
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
Y G ++A K+ M V PDI T+NT+LD R +D +
Sbjct: 591 YCLVGKMDKAFKILDAMEVVG------------VEPDIVTYNTLLDGYFKNGRINDGLTL 638
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGK 327
++ M G+ N + M+ RAG+
Sbjct: 639 FREMQRKGVKPNTVTYGIMLAGLFRAGR 666
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/336 (20%), Positives = 132/336 (39%), Gaps = 69/336 (20%)
Query: 5 PDTVAYRSIAVTL---GQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
PD VAY ++ G+ G LF E ++PD+V YN
Sbjct: 263 PDVVAYSTVIHGFFNEGETGKACSLFH------------------EMTRQGVKPDVVTYN 304
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK- 120
+++A + + + A VL+Q+ G +P TY ++ G+ + FR+++K
Sbjct: 305 LIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKR 364
Query: 121 SYIPNALAYKVLVNTLWREGKTDEA----------------------------------- 145
IPN + + +L + G++ EA
Sbjct: 365 GLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADM 424
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+ M+ GI + ++ L G ++A++ ++ + P VV+Y+ +I
Sbjct: 425 IGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVIST 484
Query: 206 CLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
G + +A FNQM PN + +++ + HG +A +L EM IN
Sbjct: 485 FSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEM------IN 538
Query: 265 REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
KG+ PDI F++++++ + R D ++
Sbjct: 539 -----KGIPRPDIVFFSSVINSLCKDGRVMDAHDIF 569
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 126/307 (41%), Gaps = 34/307 (11%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PD+V Y+ V++ R + A Q+ +G +P+ Y +++ G
Sbjct: 471 VSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAK 530
Query: 113 EFFRKVQKSYIP--NALAYKVLVNTLWREGKTDEAVS----AVEDMERRGIVGSAALYYD 166
E ++ IP + + + ++N+L ++G+ +A A + ER G++ +
Sbjct: 531 ELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVI----TFNS 586
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNF 225
L C GK ++A +D + V +P +V+Y L+ +G I + +F +M +
Sbjct: 587 LIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKG 646
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE------------------- 266
PN VT IM+ G A K F EM E +
Sbjct: 647 VKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAI 706
Query: 267 --YDKKGL--VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA 322
+ K G V I NTM++A +R ++ + ++ + GL N + MI++
Sbjct: 707 ILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINL 766
Query: 323 SRAGKVE 329
+ G VE
Sbjct: 767 LKDGGVE 773
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 85/189 (44%), Gaps = 16/189 (8%)
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL- 181
+P Y +L++ R + D ++ + R G+ L +CLC A + EEA+
Sbjct: 154 VPTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVN 213
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK---NFCSPNLVTCNIMVK 238
+ + ++ ++ P VSY+ +++A D+ Q A + M CSP++V + ++
Sbjct: 214 VLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIH 273
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G +A LF EM V PD+ T+N ++DA + D EL
Sbjct: 274 GFFNEGETGKACSLFHEMTRQG------------VKPDVVTYNLIIDALCKARAMDKAEL 321
Query: 299 VYKRMLHHG 307
V ++M G
Sbjct: 322 VLRQMTTDG 330
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/298 (19%), Positives = 131/298 (43%), Gaps = 30/298 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P + + S+ G + + F ++D+M + +EPDIV YN +L
Sbjct: 579 PGVITFNSLIDGYCLVGKMDKAFKILDAMEVVG---------------VEPDIVTYNTLL 623
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + + + ++++++G KP+ TYG+++ + G+ + F ++ +S
Sbjct: 624 DGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTT 683
Query: 125 NALA-YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
++ Y +++ L R DEA+ + + + S + + + + EEA
Sbjct: 684 VTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKEL 743
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
I P +Y +I L G +++A +F+ M K+ P N +++ LE
Sbjct: 744 FATISASGLLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLE 803
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW-DDLELV 299
G E+A+ N++++ K+ ++ + T + ML + + ++ +D++L+
Sbjct: 804 KG----------EIAKAGNYLSKVDGKR--ILLEASTTSLMLSLFSRKGKYQEDIKLL 849
>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/329 (21%), Positives = 141/329 (42%), Gaps = 51/329 (15%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV-------------- 101
D+ Y +++ ACV ++ A V ++++++G KP+ TY +++ V
Sbjct: 32 DVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIKGL 91
Query: 102 ------------------MLACGKYNLVYE----FFRKVQK-SYIPNALAYKVLVNTLWR 138
++ C + ++E F+ ++ ++P+ + Y L++ +
Sbjct: 92 FEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGK 151
Query: 139 EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
+T EA+ + +ME G S Y L G +EA+ +++ + V +
Sbjct: 152 SRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFT 211
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
YT L+ + +G ++A +F +M+ C PN+ T N ++K + G F E MK+F+E+
Sbjct: 212 YTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEI- 270
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
K +PDI T+NT+L ++ V+K M G +
Sbjct: 271 -----------KNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNT 319
Query: 318 MILDASRAGKVELLEITWEHLARADRITP 346
+I SR G + ++ + A ITP
Sbjct: 320 LISAYSRCGSFDQAMDIYKRMLEAG-ITP 347
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 120/274 (43%), Gaps = 14/274 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD YN ++ C R E A V + +K G P TY +++V + E
Sbjct: 102 PDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEV 161
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
R+++ P+ + Y L++ R+G EA+ M GI Y L
Sbjct: 162 LREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVR 221
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVT 232
AGK E A+ ++ KP + ++ LI+ + G +F ++KN C P++VT
Sbjct: 222 AGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVT 281
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ + ++G+ E +F+EM K+ +P+ T+NT++ A +
Sbjct: 282 WNTLLAVFGQNGMDSEVSGVFKEM------------KRAGFVPERDTYNTLISAYSRCGS 329
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+D +YKRML G+ + + ++ +R G
Sbjct: 330 FDQAMDIYKRMLEAGITPDLSTYNAVLAALARGG 363
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 111/262 (42%), Gaps = 22/262 (8%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLER 48
M PD V Y ++ G++ KE +V+ M SL + G L+
Sbjct: 133 MGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKE 192
Query: 49 W--------DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
+ + D+ Y +L+ VR + E A V +++ G KP+ T+ +++
Sbjct: 193 AMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIK 252
Query: 101 VMLACGKYNLVYEFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+ GK+ + + F +++ S +P+ + + L+ + G E ++M+R G V
Sbjct: 253 MHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVP 312
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219
Y L G ++A+ ++ + P + +Y ++ A G + + IF
Sbjct: 313 ERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIF 372
Query: 220 NQMKNF-CSPNLVTCNIMVKAY 240
+MK+ C PN +T ++ AY
Sbjct: 373 AEMKDGRCKPNELTYCSLLHAY 394
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/348 (20%), Positives = 130/348 (37%), Gaps = 69/348 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLER---- 48
PD V + ++ GQ G E+ V M+ +L + G+ ++
Sbjct: 277 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDI 336
Query: 49 ----WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG-------- 96
+ + PD+ YNAVL A R WE + + ++K KP+ TY
Sbjct: 337 YKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYAN 396
Query: 97 ------------------------LVMEVMLACGKYNLVYE----FFRKVQKSYIPNALA 128
L+ ++L K +L+ E F +K + P+
Sbjct: 397 GKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLST 456
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
+++ R + + M G S A Y L + E + + +I
Sbjct: 457 LNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEIL 516
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFE 247
KP +SY +I A +G ++ A+ IF++M+ + P+++T N V +Y +FE
Sbjct: 517 AKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFE 576
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
+A+ + + M + P+ T+N+++D DD
Sbjct: 577 DAIDVVRYMIKHGCK------------PNQNTYNSVVDGYCKHNHRDD 612
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 84/223 (37%), Gaps = 37/223 (16%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
LE PD+ NA+L+ RR+ + +L + + G PS TY +M +
Sbjct: 443 LELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRS 502
Query: 106 GKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
+ E +++ K P+ ++Y ++ R G+ EA +M G+V
Sbjct: 503 ENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLV------ 556
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-K 223
P V++Y + + ++A + M K
Sbjct: 557 -----------------------------PDVITYNTFVASYAADSMFEDAIDVVRYMIK 587
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
+ C PN T N +V Y +H ++A+ + E HI+RE
Sbjct: 588 HGCKPNQNTYNSVVDGYCKHNHRDDAIMFISSLHELDPHISRE 630
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 14/179 (7%)
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
V+++ L +EGK A S + D+ + G Y L S G+ EA+M K+ +
Sbjct: 3 VIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEE 62
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAY-IFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEE 248
KP +++Y ++ G N +F MKN P+ T N ++ L EE
Sbjct: 63 GCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEE 122
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
A +F++M K +PD T+N +LD +R + V + M +G
Sbjct: 123 AAAVFKDM------------KSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNG 169
>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
Length = 1144
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 138/328 (42%), Gaps = 34/328 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL-ERWDPR--------- 52
PD V Y S+ L + G E + DSM R L + GTL + + +
Sbjct: 302 PDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL 361
Query: 53 --------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ P+ V++ ++ A ++ + + A V +++QQG P TYG V+ ++
Sbjct: 362 LDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCK 421
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ +F + + + P + Y L+++L K D+A + +M RGI
Sbjct: 422 SGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIF 481
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ + C G+ E+ D + ++ KP +++Y+ LI +G + A + M
Sbjct: 482 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMV 541
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ P+ VT N ++ Y + E+A+ LF+EM V PDI T+N
Sbjct: 542 SVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG------------VSPDIITYNI 589
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHF 310
+L +R + +Y + G
Sbjct: 590 ILQGLFQTRRTAAAKELYVGITESGTQL 617
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 120/286 (41%), Gaps = 19/286 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V Y V+N + + A+ ++ +G P+ TY ++ + + E
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEV 256
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
V+ +PN Y +V+ G+ EA+ ++ M G+ Y L LC
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCK 316
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+C EA D + K KP + +Y L+Q G + + + M +N PN
Sbjct: 317 NGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 376
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+I++ AY + G ++AM +F +M + +GL PD T+ T++ R
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQ-----------QGLN-PDTVTYGTVIGILCKSGR 424
Query: 293 WDDLELVYKRMLHHGLH-----FNAKRHLRMILDASRAGKVELLEI 333
+D +++M+ L +N+ H I D K +LE+
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/361 (20%), Positives = 145/361 (40%), Gaps = 69/361 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR-------------------SLPKKKFKTGT 45
P+ V Y SI L +A + + +V+ SM S + K G
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291
Query: 46 LERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L++ +EPD+V YN++++ + + A + + ++G KP TTYG +++
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G ++ + ++ I PN + +L+ ++GK D+A+ M ++G+
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT 411
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA------------------ 205
Y + LC +G+ E+A+ +++ P + Y LI +
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML 471
Query: 206 ----CLDS-------------GNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFE 247
CLD+ G + + +F+ M P+++T + ++ Y G +
Sbjct: 472 DRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMD 531
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
EA KL M + PD T+NT+++ R +D ++++ M G
Sbjct: 532 EATKLLASMVSVG------------MKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579
Query: 308 L 308
+
Sbjct: 580 V 580
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/329 (20%), Positives = 142/329 (43%), Gaps = 27/329 (8%)
Query: 41 FKTGTLER--------WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSA 92
FK G L++ D + P++V Y++++ A + + + A VL + + G P+
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269
Query: 93 TTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVED 151
TY ++ + G+ F +K+ + P+ + Y L++ L + G+ EA +
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
M +RG+ Y L + + G E +D + + P ++ LI A G
Sbjct: 330 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGK 389
Query: 212 IQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270
+ A +F++M+ +P+ VT ++ + G E+AM+ F++M ++
Sbjct: 390 VDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDER---------- 439
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-- 328
+ P +N+++ + +WD + + ML G+ + +I + G+V
Sbjct: 440 --LSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE 497
Query: 329 --ELLEITWEHLARADRITPPALIKERFC 355
+L ++ + D IT LI + +C
Sbjct: 498 SEKLFDLMVRIGVKPDIITYSTLI-DGYC 525
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 73/180 (40%), Gaps = 15/180 (8%)
Query: 145 AVSAVEDMERRG---IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
AVS M R G + + Y L C AG+ + + + K + +++T
Sbjct: 72 AVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTP 131
Query: 202 LIQA-CLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
L++ C D + +M C PN+ + NI++K + +EA++L Q M +D
Sbjct: 132 LLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDD 191
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
G PD+ ++ T+++ E D Y ML G+ N + +I
Sbjct: 192 G----------GDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSII 241
>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 733
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/353 (22%), Positives = 151/353 (42%), Gaps = 63/353 (17%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V Y +I + + G + + ++++ M F G + PD+V Y +V+N
Sbjct: 344 DKVGYSAIVHSFCREGRMDKAKEIVNEM-------FSKGCI--------PDVVTYTSVIN 388
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-IP 124
+ ++ + A +L+Q+ + G KP+ +Y ++ + G E ++ + IP
Sbjct: 389 GLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIP 448
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
NA+ Y VL++ REGK+ EA V +M ++G + L + LC K +EA
Sbjct: 449 NAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEA---- 504
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHG 244
++ CL++G C+ N+V ++ + +
Sbjct: 505 ---------------KRFMEQCLNNG---------------CAVNVVNFTTVIHGFCQKD 534
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
E A+ L +M + H PD+ T+ T++DA + R ++ + +ML
Sbjct: 535 DLEAALSLLDDMYLSNKH------------PDVVTYTTIIDALGKKGRIEEATKLAMKML 582
Query: 305 HHGLHFNAKRHLRMILDASRAGKVE-LLEITWEHLARADRITPPALIKERFCN 356
GL + +I R G+VE LL++ + L+R + T + E+ C+
Sbjct: 583 RVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRTAYNQVIEKLCS 635
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 115/261 (44%), Gaps = 15/261 (5%)
Query: 55 PDIVVYNAVLN-ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
PD + Y V+ C ++ E + + LK P TY + ++ G + E
Sbjct: 272 PDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALE 331
Query: 114 FFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F R+ + + + + + Y +V++ REG+ D+A V +M +G + Y + LC
Sbjct: 332 FLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLC 391
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
K ++A + ++ K KP VSYT L+ +GN A + N +++ PN +
Sbjct: 392 QERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAI 451
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T ++++ + G EA L +EM KKG P N ++ + E+
Sbjct: 452 TYSVLMHGFRREGKSSEACDLVREMI-----------KKGF-FPTPVEINLLIQSLCQEE 499
Query: 292 RWDDLELVYKRMLHHGLHFNA 312
+ D+ + ++ L++G N
Sbjct: 500 KVDEAKRFMEQCLNNGCAVNV 520
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 119/292 (40%), Gaps = 30/292 (10%)
Query: 48 RWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK 107
+W R +P +VY A+L + K +GA VL+ + ++ + +G VM GK
Sbjct: 127 QWRYRHDP--IVYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGYVMVSYSRAGK 184
Query: 108 YNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
+QK+ I P+ ++ L + D+AV +E M+ I + Y
Sbjct: 185 LRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNC 244
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC 226
L + C + E+A+ + ++ P +SY ++ I+ + +M
Sbjct: 245 LIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDS 304
Query: 227 S--PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR------------------- 265
+ P+ VT N V +HG +EA++ +E E +++
Sbjct: 305 NLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKA 364
Query: 266 -----EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
E KG IPD+ T+ ++++ E++ D + + ++M HG N
Sbjct: 365 KEIVNEMFSKG-CIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNT 415
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 10/208 (4%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
++V + V++ ++ E A +L + + P TY +++ + G+ +
Sbjct: 519 NVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLA 578
Query: 116 RKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
K+ + IP + Y+ +++ R G+ ++ + +E M R +A Y + LCS
Sbjct: 579 MKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRTA--YNQVIEKLCSF 636
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG----NIQNAAYIFNQMKNFCSPNL 230
G E+A + K+ + A+K + LI++ L G + A +FN +N P+L
Sbjct: 637 GNLEQAYKLLGKVLRTASKIDANTCHMLIESYLSKGIPLMSYNVACRMFN--RNLI-PDL 693
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
C + K + G EEA KL E
Sbjct: 694 KLCEKVSKKLMLEGKSEEADKLILRFVE 721
>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
Length = 1512
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 129/310 (41%), Gaps = 39/310 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ L + G +KE + M + D+ YN+++
Sbjct: 1118 PDVVVYSSLMDGLCRFGRLKEALEFFKEMEG---------------RGISADVYTYNSLI 1162
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN---LVYEFFRKVQKS 121
+ R W+ W L + +G P A T+ ++++ + GK + E R K
Sbjct: 1163 HGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMR--HKG 1220
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
P+ L Y L+N L G+ ++A E + RGI + Y L C K +EA
Sbjct: 1221 KEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAF 1280
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP--NLVTCNIMVKA 239
+++ KP V+Y LI A SG ++ A +F +M+ C L T +++
Sbjct: 1281 RFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQT-CGQFLKLSTYCVLLDG 1339
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAA---EKRWDD 295
++G EEAM LFQ + + + P+I F+ +LD C A E+ W
Sbjct: 1340 LCKNGHLEEAMDLFQSIKKTEHK------------PNIEVFSILLDGMCRAGKLEEAWKQ 1387
Query: 296 LELVYKRMLH 305
+ + K L
Sbjct: 1388 FDEISKNGLE 1397
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 122/282 (43%), Gaps = 29/282 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + + L + G + E +++ MR K EPDI+ YN ++
Sbjct: 1188 PDAFTFTILIDGLCKEGKVGEAQQILELMRHKGK---------------EPDILTYNTLM 1232
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
N Q E A + + L +G K + +Y +++ K + + FF +++ K
Sbjct: 1233 NGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLK 1292
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L+ L + G+ A +M+ G + Y L LC G EEA+
Sbjct: 1293 PSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDL 1352
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
I K +KP + ++ L+ +G ++ A F+++ KN P+ + NI++
Sbjct: 1353 FQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCN 1412
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
G+ EA+KL +M E KG +PD TFN ++
Sbjct: 1413 KGMLSEAVKLLWQMEE-----------KG-CLPDSITFNVII 1442
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 120/254 (47%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ L G +++ + +S+ D ++ ++ YN ++
Sbjct: 1223 PDILTYNTLMNGLCLVGQLEDATKLFESLA---------------DRGIKLNVFSYNILI 1267
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
N + ++ + AF ++++ +G KPS TY ++ + G+ + F ++Q
Sbjct: 1268 NGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQF 1327
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
Y VL++ L + G +EA+ + +++ + ++ L +C AGK EEA Q
Sbjct: 1328 LKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQ 1387
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
D+I K +P ++Y LI + G + A + QM + C P+ +T N++++ L+
Sbjct: 1388 FDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLK 1447
Query: 243 HGLFEEAMKLFQEM 256
EA++L +EM
Sbjct: 1448 ENEIHEAIQLLEEM 1461
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 111/262 (42%), Gaps = 15/262 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
EPD V ++ A + ++ ++G A TYG+++ + K L
Sbjct: 1012 FEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAI 1071
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ K++ + + Y ++++ L ++G T EA+ +M GI+ +Y L LC
Sbjct: 1072 KLHEKMKGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLC 1131
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNL 230
G+ +EAL ++ V +Y LI +G + + N M + F SP+
Sbjct: 1132 RFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGF-SPDA 1190
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T I++ + G EA ++ + M H +E PDI T+NT+++
Sbjct: 1191 FTFTILIDGLCKEGKVGEAQQILELM----RHKGKE--------PDILTYNTLMNGLCLV 1238
Query: 291 KRWDDLELVYKRMLHHGLHFNA 312
+ +D +++ + G+ N
Sbjct: 1239 GQLEDATKLFESLADRGIKLNV 1260
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 108/260 (41%), Gaps = 15/260 (5%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-GLVMEVMLACGKY 108
D ++PD+ N +++ C + F V ++G +P A T LV V + G
Sbjct: 974 DVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIP 1033
Query: 109 NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
+ V F +K + +A Y +L+N L + KT A+ E M + G Y +
Sbjct: 1034 DAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKM-KGNCKGDVFTYGMII 1092
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCS 227
LC G EAL ++ P VV Y+ L+ G ++ A F +M+ S
Sbjct: 1093 DALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGIS 1152
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
++ T N ++ GL++E M ++R + PD +TF ++D
Sbjct: 1153 ADVYTYNSLIHGLSRAGLWKEVTWFLNLM------VDRGFS------PDAFTFTILIDGL 1200
Query: 288 AAEKRWDDLELVYKRMLHHG 307
E + + + + + M H G
Sbjct: 1201 CKEGKVGEAQQILELMRHKG 1220
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 119/276 (43%), Gaps = 15/276 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC-GKYNLVYE 113
P +N +L + + + F + +++ G +P T +++ +
Sbjct: 944 PCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGV 1003
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F +++ + P+A+ LV +W E +AV ++M ++G++G A Y L LC
Sbjct: 1004 FGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCK 1063
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
A K A+ +K+ K K V +Y +I A G A +F++M P++V
Sbjct: 1064 ARKTGLAIKLHEKM-KGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVV 1122
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+ ++ G +EA++ F+EM + +G + D+YT+N+++ +
Sbjct: 1123 YSSLMDGLCRFGRLKEALEFFKEM-----------EGRG-ISADVYTYNSLIHGLSRAGL 1170
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
W ++ M+ G +A +I + GKV
Sbjct: 1171 WKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKV 1206
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 83/173 (47%), Gaps = 1/173 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+P V YN ++ A + + A + +++ GQ +TY ++++ + G
Sbjct: 1291 LKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAM 1350
Query: 113 EFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F+ ++K+ + PN + +L++ + R GK +EA +++ + G+ Y L L
Sbjct: 1351 DLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGL 1410
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
C+ G EA+ + ++ + P +++ +IQ L I A + +M+N
Sbjct: 1411 CNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRN 1463
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 73/160 (45%), Gaps = 21/160 (13%)
Query: 17 LGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGA 76
L + GH++E D+ S++ K P+I V++ +L+ R + E A
Sbjct: 1340 LCKNGHLEEAMDLFQSIKKTEHK---------------PNIEVFSILLDGMCRAGKLEEA 1384
Query: 77 FWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL---VYEFFRKVQKSYIPNALAYKVLV 133
+ ++ + G +P Y +++ + C K L V ++ +K +P+++ + V++
Sbjct: 1385 WKQFDEISKNGLEPDTIAYNILINGL--CNKGMLSEAVKLLWQMEEKGCLPDSITFNVII 1442
Query: 134 NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
L +E + EA+ +E+M R A+ + CL S
Sbjct: 1443 QNLLKENEIHEAIQLLEEMRNRNFSPDEAV-TSMLLCLAS 1481
>gi|326527525|dbj|BAK08037.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 460
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 132/304 (43%), Gaps = 18/304 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PD+V YN +L A R + F VL ++++ G P A TY ++ G
Sbjct: 41 MPPDVVTYNTLLAAHCRASGLDAGFAVLHRMREAGVSPDAITYNSLIAGAARRGLTMRAL 100
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F + +Q P+A +Y L++ L+R G ++A DM +G+ A Y L L
Sbjct: 101 DLFDEMLQAGVAPDAWSYNALMHCLFRSGHPEDAYRVFADMAEKGVAPCATTYNTLLDGL 160
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
G A + + +V+Y +I SG + A + ++ + +PN+
Sbjct: 161 FRFGHATNAYRMFRYLQRTGLPVGIVTYNTMINGLCKSGKVGYARMVLRELGRTEHAPNV 220
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT ++K ++G F++ ++ F + E G IPD++ + T++ A +
Sbjct: 221 VTYTTVMKCCFKYGRFDQGLETFLSLLE------------GGYIPDLFPYCTVISALVKK 268
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITP 346
R ++ + M+ G ++ + +I + GK+ ELL + E +D T
Sbjct: 269 GRMEEANTYSELMIRSGFRLDSACYNTLIYLRCKEGKLDDAFELLSMMEEGGLESDEYTF 328
Query: 347 PALI 350
L+
Sbjct: 329 SILV 332
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 105/278 (37%), Gaps = 62/278 (22%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTG------TL 46
PD +Y ++ L ++GH ++ + V M +L F+ G +
Sbjct: 113 PDAWSYNALMHCLFRSGHPEDAYRVFADMAEKGVAPCATTYNTLLDGLFRFGHATNAYRM 172
Query: 47 ERWDPR--LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
R+ R L IV YN ++N + + A VL++L + P+ TY VM+
Sbjct: 173 FRYLQRTGLPVGIVTYNTMINGLCKSGKVGYARMVLRELGRTEHAPNVVTYTTVMKCCFK 232
Query: 105 CGKYNLVYE-FFRKVQKSYIPNALAYKVLVNTL--------------------------- 136
G+++ E F ++ YIP+ Y +++ L
Sbjct: 233 YGRFDQGLETFLSLLEGGYIPDLFPYCTVISALVKKGRMEEANTYSELMIRSGFRLDSAC 292
Query: 137 --------WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
+EGK D+A + ME G+ + L LC G E A Q +C
Sbjct: 293 YNTLIYLRCKEGKLDDAFELLSMMEEGGLESDEYTFSILVNGLCKMGHFEAAHKQ---LC 349
Query: 189 KVANKPL---VVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ + + V++Y L+ A S + A + + MK
Sbjct: 350 YMEIRDMESNVIAYNCLVDALCKSDEVDAAIKLLHNMK 387
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 83/213 (38%), Gaps = 13/213 (6%)
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
V + L R G A S + D R G+ Y L C A + + ++ +
Sbjct: 15 VCLAALCRGGGIARAESVLVDAIRLGMPPDVVTYNTLLAAHCRASGLDAGFAVLHRMREA 74
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEA 249
P ++Y LI G A +F++M + +P+ + N ++ G E+A
Sbjct: 75 GVSPDAITYNSLIAGAARRGLTMRALDLFDEMLQAGVAPDAWSYNALMHCLFRSGHPEDA 134
Query: 250 MKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH 309
++F +MAE KG V P T+NT+LD + +++ + GL
Sbjct: 135 YRVFADMAE-----------KG-VAPCATTYNTLLDGLFRFGHATNAYRMFRYLQRTGLP 182
Query: 310 FNAKRHLRMILDASRAGKVELLEITWEHLARAD 342
+ MI ++GKV + L R +
Sbjct: 183 VGIVTYNTMINGLCKSGKVGYARMVLRELGRTE 215
>gi|297803426|ref|XP_002869597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315433|gb|EFH45856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 538
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 31/283 (10%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
V++++ K++ A Q+K G P+ + M +L G+ ++ F+R++
Sbjct: 170 VFDSLFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREM 229
Query: 119 QKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
++ I PN ++++ R GK D+ + ++DMER G + Y L C G
Sbjct: 230 RRCKISPNTYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATHVSYNTLIAGHCEKGLL 289
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIM 236
AL + + K +P VV++ LI + +Q A+ +F +MK PN VT N +
Sbjct: 290 SSALKLKNMMGKNGLQPNVVTFNTLIHGFCRAVKLQEASKVFGEMKALNLPPNTVTYNTL 349
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINR--------------------------EYDKK 270
+ Y + G E A + +++M N I R E DK+
Sbjct: 350 INGYSQQGDHEMAFRFYEDMV--CNGIQRDILTYNTLILGLCKQAKTRKAAQFVKELDKE 407
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK 313
LV P+ TF+ ++ + D +YK M+ G H N +
Sbjct: 408 NLV-PNSSTFSALIMGQCVRRNADRGFELYKSMIRSGCHPNEQ 449
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 86/205 (41%), Gaps = 2/205 (0%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
V YN ++ + A + + + G +P+ T+ ++ K + F +
Sbjct: 274 VSYNTLIAGHCEKGLLSSALKLKNMMGKNGLQPNVVTFNTLIHGFCRAVKLQEASKVFGE 333
Query: 118 VQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
++ +P N + Y L+N ++G + A EDM GI Y L LC K
Sbjct: 334 MKALNLPPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNTLILGLCKQAK 393
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNI 235
+A + ++ K P +++ LI N ++ M ++ C PN T NI
Sbjct: 394 TRKAAQFVKELDKENLVPNSSTFSALIMGQCVRRNADRGFELYKSMIRSGCHPNEQTFNI 453
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDS 260
++ A+ ++ F+ A ++ +EM S
Sbjct: 454 LISAFCKNEDFDGAAQVLREMVRRS 478
>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 131/310 (42%), Gaps = 34/310 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTLERWDPR---------- 52
PD V Y S+ L + G E + DSM R L + GTL +
Sbjct: 302 PDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL 361
Query: 53 --------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ P+ V++ ++ A ++ + + A V +++QQG P TYG V+ ++
Sbjct: 362 LDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCK 421
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ +F + + + P + Y L+++L K D+A + +M RGI
Sbjct: 422 SGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIF 481
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ + C G+ E+ D + ++ KP +++Y+ LI +G + A + M
Sbjct: 482 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMV 541
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ P+ VT N ++ Y + E+A+ LF+EM V PDI T+N
Sbjct: 542 SVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG------------VSPDIITYNI 589
Query: 283 MLDACAAEKR 292
+L +R
Sbjct: 590 ILQGLFQTRR 599
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 120/286 (41%), Gaps = 19/286 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V Y V+N + + A+ ++ +G P+ TY ++ + + E
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEV 256
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
V+ +PN Y +V+ G+ EA+ ++ M G+ Y L LC
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCK 316
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+C EA D + K KP + +Y L+Q G + + + M +N PN
Sbjct: 317 NGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 376
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+I++ AY + G ++AM +F +M + +GL PD T+ T++ R
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQ-----------QGLN-PDTVTYGTVIGILCKSGR 424
Query: 293 WDDLELVYKRMLHHGLH-----FNAKRHLRMILDASRAGKVELLEI 333
+D +++M+ L +N+ H I D K +LE+
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/361 (20%), Positives = 145/361 (40%), Gaps = 69/361 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR-------------------SLPKKKFKTGT 45
P+ V Y SI L +A + + +V+ SM S + K G
Sbjct: 232 PNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291
Query: 46 LERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L++ +EPD+V YN++++ + + A + + ++G KP TTYG +++
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G ++ + ++ I PN + +L+ ++GK D+A+ M ++G+
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT 411
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA------------------ 205
Y + LC +G+ E+A+ +++ P + Y LI +
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML 471
Query: 206 ----CLDS-------------GNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFE 247
CLD+ G + + +F+ M PN++T + ++ Y G +
Sbjct: 472 DRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMD 531
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
EA KL M + PD T+NT+++ R +D ++++ M G
Sbjct: 532 EATKLLASMVSVG------------MKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579
Query: 308 L 308
+
Sbjct: 580 V 580
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/351 (20%), Positives = 150/351 (42%), Gaps = 42/351 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y ++ + G + + + M D + P++V YN+++
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEM---------------LDRGILPNVVTYNSII 241
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
A + + + A VL + + G P+ TY ++ + G+ F +K+ +
Sbjct: 242 AALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVE 301
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ L + G+ EA + M +RG+ Y L + + G E
Sbjct: 302 PDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL 361
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+D + + P ++ LI A G + A +F++M+ +P+ VT ++ +
Sbjct: 362 LDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCK 421
Query: 243 HGLFEEAMKLFQEMAED--------------SNHINREYDK----------KGLVIPDIY 278
G E+AM+ F++M ++ S I ++DK +G+ + I+
Sbjct: 422 SGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIF 481
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
FN+++D+ E R + E ++ M+ G+ N + +I AGK++
Sbjct: 482 -FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMD 531
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 15/169 (8%)
Query: 145 AVSAVEDMERRG---IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
AVS M R G + + Y L C AG+ + + + K + +++T
Sbjct: 72 AVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTP 131
Query: 202 LIQA-CLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
L++ C D + +M C PN+ + NI++K + +EA++L Q M +D
Sbjct: 132 LLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDD 191
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
G PD+ ++ T+++ E D Y ML G+
Sbjct: 192 G----------GDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGI 230
>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 568
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 130/307 (42%), Gaps = 29/307 (9%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ Y + + G K+ F + D MR ER + +IV YN +
Sbjct: 265 FPNLYTYNCVMNQHCKDGRTKDAFKLFDEMR------------ERG---VSCNIVTYNTL 309
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSY 122
+ R + A V+ Q+K G P+ TY +++ GK R ++ +
Sbjct: 310 IGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGL 369
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ + Y +LV+ ++G T A V++ME RGI S Y L E+A+
Sbjct: 370 SPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQ 429
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ ++ P V +Y+ LI G + A+ +F M PN V N MV Y
Sbjct: 430 LRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYC 489
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G A++LF+EM E + P++ ++ M++ E++ + E + +
Sbjct: 490 KEGSSYRALRLFREMEEKE------------LPPNVASYRYMIEVLCKERKSKEAEGLVE 537
Query: 302 RMLHHGL 308
+M+ G+
Sbjct: 538 KMIDTGI 544
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/334 (21%), Positives = 145/334 (43%), Gaps = 42/334 (12%)
Query: 19 QAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFW 78
+AG I++ FD++ +R P++V+Y +++ C +R + E A
Sbjct: 175 EAGEIEKSFDLLVELREFG---------------FSPNVVIYTTLIDGCCKRGEIEKAKD 219
Query: 79 VLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLW 137
+ ++ + G + TY +++ + G +E + K+Q+ + PN Y ++N
Sbjct: 220 LFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHC 279
Query: 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV 197
++G+T +A ++M RG+ + Y L LC K EA MD++ P ++
Sbjct: 280 KDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLI 339
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+Y LI G + A + +K+ SP+LVT NI+V + + G A K+ +EM
Sbjct: 340 TYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEM 399
Query: 257 A------------------------EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
E + + ++ GL PD++T++ ++ + +
Sbjct: 400 EERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLT-PDVHTYSVLIHGFCIKGQ 458
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
++ ++K M+ L N + M+L + G
Sbjct: 459 MNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEG 492
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/289 (18%), Positives = 114/289 (39%), Gaps = 49/289 (16%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
+Y ++NA V+ + + + ++ +G P + + ++ ++ +N + FF
Sbjct: 96 LYEVMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFF--- 152
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ + D+ GIV + C AG+ E
Sbjct: 153 -----------------------NESKIKVDLDVYSFGIV---------IKGCCEAGEIE 180
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
++ + ++ + P VV YT LI C G I+ A +F +M F N T +++
Sbjct: 181 KSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLI 240
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
++G+ ++ +++++M ED V P++YT+N +++ + R D
Sbjct: 241 HGLFKNGIKKQGFEMYEKMQEDG------------VFPNLYTYNCVMNQHCKDGRTKDAF 288
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
++ M G+ N + +I R K + + ++D I P
Sbjct: 289 KLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQM-KSDGINP 336
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 1/143 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P + Y +++ R E A + +++ G P TY +++ G+ N
Sbjct: 404 IKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEAS 463
Query: 113 EFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F+ V K PN + Y +V +EG + A+ +ME + + + A Y + L
Sbjct: 464 RLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVL 523
Query: 172 CSAGKCEEALMQMDKICKVANKP 194
C K +EA ++K+ P
Sbjct: 524 CKERKSKEAEGLVEKMIDTGIDP 546
>gi|255660978|gb|ACU25658.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 373
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 137/286 (47%), Gaps = 15/286 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + ++ PD VVYNA+LN R + + F + + + +G + S +++ +M + G
Sbjct: 15 EIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNXMMRGLFDNG 73
Query: 107 KYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K + V + +++S ++ +++ Y +LV+ + G D+++ +E E++G V A Y
Sbjct: 74 KVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYS 133
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+ LC + A+ ++ + K KP V Y LI + + ++A +F +M
Sbjct: 134 AMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTM 193
Query: 226 -CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
CSP ++T N ++ ++ +F EA L +E+ + KGL P + T++ ++
Sbjct: 194 HCSPTIITYNTLINGLCKNKMFGEAYNLVKELLD-----------KGLD-PGVITYSMLM 241
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ + ++ ++ G + + H +I GK++L
Sbjct: 242 XGLCLDHXVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQL 287
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 121/292 (41%), Gaps = 29/292 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D++ Y + + G+I + S+ L + K G L D Y+A++N
Sbjct: 93 DSITYGILVHGFCKNGYIDK------SLHVLEMAEQKGGVL---------DAFAYSAMIN 137
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ + A VL + + G KP+ Y ++ ++ K+ FR++ + P
Sbjct: 138 GLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSP 197
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ Y L+N L + EA + V+++ +G+ Y L LC E AL
Sbjct: 198 TIITYNTLINGLCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMXGLCLDHXVERALQLW 257
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
+++ KP V + LI G +Q A + M + C+PNLV+ N +++ + +
Sbjct: 258 NQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLXFDMNRWKCAPNLVSHNTLMEGFYKD 317
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
G A+ ++ + + GL PDI ++N L+ + R D
Sbjct: 318 GDIRNALVIWARIL-----------RNGLE-PDIISYNITLEGLCSCNRISD 357
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/137 (19%), Positives = 57/137 (41%), Gaps = 1/137 (0%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D L+P ++ Y+ ++ E A + Q+ +G KP + +++ + + G
Sbjct: 224 ELLDKGLDPGVITYSMLMXGLCLDHXVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVG 283
Query: 107 KYNLVYEF-FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K L F + PN +++ L+ +++G A+ + R G+ Y
Sbjct: 284 KMQLALSLXFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343
Query: 166 DLARCLCSAGKCEEALM 182
LCS + +A++
Sbjct: 344 ITLEGLCSCNRISDAIL 360
>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 126/283 (44%), Gaps = 20/283 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY-- 112
P+IV YN ++ + A + ++++ G P TYG +++ + G N+
Sbjct: 137 PNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKL 196
Query: 113 --EFFRKVQKSYI---PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
E + + I PN + Y ++V+ L + G+ DEA E+M+ +G++ S Y L
Sbjct: 197 HQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSL 256
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
C AGK EE+ +D++ +P +V++ LI G + A + M ++
Sbjct: 257 IHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGI 316
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
P+LVT N +++ + G A +LF M PD+ ++N +++
Sbjct: 317 VPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCE------------PDVISYNVLING 364
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + ++ +Y ML G N + ++ AGKV+
Sbjct: 365 YSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVD 407
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 141/320 (44%), Gaps = 40/320 (12%)
Query: 5 PDTVAYRSIA---VTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
PD V Y S+ +G +ELF S+P K EPD++ YN
Sbjct: 318 PDLVTYNSLIEGFCMVGDLNSARELF------VSMPSKG------------CEPDVISYN 359
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
++N + + E A + ++ G++P+ TY +++ + GK + + F ++
Sbjct: 360 VLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAH 419
Query: 122 YIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
I N+ Y + ++ L + EA+ +++ L LC AGK E A
Sbjct: 420 GIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETA 479
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKA 239
+K+ ++P VV+YT +I G + A + +M+ N C+P+++T N +++
Sbjct: 480 WELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRG 539
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD-LEL 298
+ E EE ++L MA+ V PD T + ++D + ++++ + L L
Sbjct: 540 FYESNKLEEVVQLLHRMAQKD------------VSPDAITCSIVVDMLSKDEKYQECLHL 587
Query: 299 VYKRMLHHGLHFNAKRHLRM 318
+ + + G+ +HL M
Sbjct: 588 LPRFPIQKGV----DKHLLM 603
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 135/314 (42%), Gaps = 28/314 (8%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP-NALAYKVLVN 134
A + + PS +++ ++ + Y+ V+ + +++ S + + +L+N
Sbjct: 53 ALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLN 112
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194
L + E +A + RRG + Y L + LC + EA ++ K+ P
Sbjct: 113 CLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTP 172
Query: 195 LVVSYTGLIQACLDSGNIQNAAYIFNQMKN-------FCSPNLVTCNIMVKAYLEHGLFE 247
VV+Y LI+ +GNI A + +M N C PN++T NI+V + G +
Sbjct: 173 DVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGRED 232
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
EA +LF+EM K +IP I ++N+++ +W++ + + ML G
Sbjct: 233 EAKQLFEEM------------KTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQG 280
Query: 308 LHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPALIKERFCNRLENKDY 363
L + +I + GKV +LL + E D +T +LI E FC D
Sbjct: 281 LQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLI-EGFCMV---GDL 336
Query: 364 GSAISCLVSHPVSG 377
SA VS P G
Sbjct: 337 NSARELFVSMPSKG 350
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/380 (21%), Positives = 154/380 (40%), Gaps = 61/380 (16%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ L G+I + M + + R++ +P+++ YN ++
Sbjct: 172 PDVVTYGTLIKGLCGTGNINIALKLHQEMLN---------DISRYEINCKPNVITYNIIV 222
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + + A + +++K QG PS +Y ++ GK+ + + +
Sbjct: 223 DGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQ 282
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG-------- 175
P+ + + VL++TL +EGK EA + M GIV Y L C G
Sbjct: 283 PDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSAREL 342
Query: 176 ---------------------------KCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
K EEA+ +++ V +P V++Y L++
Sbjct: 343 FVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFL 402
Query: 209 SGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
+G + +A +F+ MK + + N T I + ++ EAMKLF E+ + +
Sbjct: 403 AGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKL---- 458
Query: 268 DKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+I N ++D C A K EL ++++ + G N + MI R G
Sbjct: 459 --------EIENLNCLIDGLCKAGKLETAWEL-FEKLSNEGHEPNVVTYTIMIHGFCREG 509
Query: 327 KVELLEITWEHLARADRITP 346
+V+ + + + A+ TP
Sbjct: 510 QVDKANVLIQKM-EANGCTP 528
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/336 (21%), Positives = 134/336 (39%), Gaps = 64/336 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P ++Y S+ AG +E ++D M D L+PD+V +N ++
Sbjct: 248 PSIISYNSLIHGFCCAGKWEESKRLLDEM---------------LDQGLQPDMVTFNVLI 292
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + + A +L + + G P TY ++E G N E F + K
Sbjct: 293 DTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCE 352
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA--- 180
P+ ++Y VL+N + K +EA+ +M G + Y L + + AGK ++A
Sbjct: 353 PDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKL 412
Query: 181 --LMQ--------------MDKICK---------------VANKPLVV-SYTGLIQACLD 208
+M+ +D +CK +N L + + LI
Sbjct: 413 FSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCK 472
Query: 209 SGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
+G ++ A +F ++ N PN+VT IM+ + G ++A L Q+M +
Sbjct: 473 AGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANG------- 525
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
PDI T+NT++ + +++ + RM
Sbjct: 526 -----CTPDIITYNTLMRGFYESNKLEEVVQLLHRM 556
>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 794
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 131/310 (42%), Gaps = 34/310 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTLERWDPR---------- 52
PD V Y S+ L + G E + DSM R L + GTL +
Sbjct: 302 PDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL 361
Query: 53 --------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ P+ V++ ++ A ++ + + A V +++QQG P TYG V+ ++
Sbjct: 362 LDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCK 421
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ +F + + + P + Y L+++L K D+A + +M RGI
Sbjct: 422 SGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIF 481
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ + C G+ E+ D + ++ KP +++Y+ LI +G + A + M
Sbjct: 482 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMV 541
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ P+ VT N ++ Y + E+A+ LF+EM V PDI T+N
Sbjct: 542 SVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG------------VSPDIITYNI 589
Query: 283 MLDACAAEKR 292
+L +R
Sbjct: 590 ILQGLFQTRR 599
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 120/286 (41%), Gaps = 19/286 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V Y V+N + + A+ ++ +G P+ TY ++ + + E
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEV 256
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
V+ +PN Y +V+ G+ EA+ ++ M G+ Y L LC
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCK 316
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+C EA D + K KP + +Y L+Q G + + + M +N PN
Sbjct: 317 NGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 376
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+I++ AY + G ++AM +F +M + +GL PD T+ T++ R
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQ-----------QGLN-PDTVTYGTVIGILCKSGR 424
Query: 293 WDDLELVYKRMLHHGLH-----FNAKRHLRMILDASRAGKVELLEI 333
+D +++M+ L +N+ H I D K +LE+
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/361 (20%), Positives = 145/361 (40%), Gaps = 69/361 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR-------------------SLPKKKFKTGT 45
P+ V Y SI L +A + + +V+ SM S + K G
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291
Query: 46 LERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L++ +EPD+V YN++++ + + A + + ++G KP TTYG +++
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G ++ + ++ I PN + +L+ ++GK D+A+ M ++G+
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT 411
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA------------------ 205
Y + LC +G+ E+A+ +++ P + Y LI +
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML 471
Query: 206 ----CLDS-------------GNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFE 247
CLD+ G + + +F+ M P+++T + ++ Y G +
Sbjct: 472 DRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMD 531
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
EA KL M + PD T+NT+++ R +D ++++ M G
Sbjct: 532 EATKLLASMVSVG------------MKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579
Query: 308 L 308
+
Sbjct: 580 V 580
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/357 (19%), Positives = 149/357 (41%), Gaps = 34/357 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y ++ + G + + + M D + P++V Y++++
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEM---------------LDRGILPNVVTYSSII 241
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
A + + + A VL + + G P+ TY ++ + G+ F +K+ +
Sbjct: 242 AALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVE 301
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ L + G+ EA + M +RG+ Y L + + G E
Sbjct: 302 PDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL 361
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+D + + P ++ LI A G + A +F++M+ +P+ VT ++ +
Sbjct: 362 LDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCK 421
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G E+AM+ F++M ++ + P +N+++ + +WD + +
Sbjct: 422 SGRVEDAMRYFEQMIDER------------LSPGNIVYNSLIHSLCIFDKWDKAKELILE 469
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPALIKERFC 355
ML G+ + +I + G+V +L ++ + D IT LI + +C
Sbjct: 470 MLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLI-DGYC 525
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 73/180 (40%), Gaps = 15/180 (8%)
Query: 145 AVSAVEDMERRG---IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
AVS M R G + + Y L C AG+ + + + K + +++T
Sbjct: 72 AVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTP 131
Query: 202 LIQA-CLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
L++ C D + +M C PN+ + NI++K + +EA++L Q M +D
Sbjct: 132 LLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDD 191
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
G PD+ ++ T+++ E D Y ML G+ N + +I
Sbjct: 192 G----------GDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSII 241
>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 131/310 (42%), Gaps = 34/310 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTLERWDPR---------- 52
PD V Y S+ L + G E + DSM R L + GTL +
Sbjct: 302 PDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL 361
Query: 53 --------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ P+ V++ ++ A ++ + + A V +++QQG P TYG V+ ++
Sbjct: 362 LDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCK 421
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ +F + + + P + Y L+++L K D+A + +M RGI
Sbjct: 422 SGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIF 481
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ + C G+ E+ D + ++ KP +++Y+ LI +G + A + M
Sbjct: 482 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMV 541
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ P+ VT N ++ Y + E+A+ LF+EM V PDI T+N
Sbjct: 542 SVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG------------VSPDIITYNI 589
Query: 283 MLDACAAEKR 292
+L +R
Sbjct: 590 ILQGLFQTRR 599
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 120/286 (41%), Gaps = 19/286 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V Y V+N + + A+ ++ +G P+ TY ++ + + E
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEV 256
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
V+ +PN Y +V+ G+ EA+ ++ M G+ Y L LC
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCK 316
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+C EA D + K KP + +Y L+Q G + + + M +N PN
Sbjct: 317 NGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 376
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+I++ AY + G ++AM +F +M + +GL PD T+ T++ R
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQ-----------QGLN-PDTVTYGTVIGILCKSGR 424
Query: 293 WDDLELVYKRMLHHGLH-----FNAKRHLRMILDASRAGKVELLEI 333
+D +++M+ L +N+ H I D K +LE+
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/361 (20%), Positives = 145/361 (40%), Gaps = 69/361 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR-------------------SLPKKKFKTGT 45
P+ V Y SI L +A + + +V+ SM S + K G
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291
Query: 46 LERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L++ +EPD+V YN++++ + + A + + ++G KP TTYG +++
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G ++ + ++ I PN + +L+ ++GK D+A+ M ++G+
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT 411
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA------------------ 205
Y + LC +G+ E+A+ +++ P + Y LI +
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML 471
Query: 206 ----CLDS-------------GNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFE 247
CLD+ G + + +F+ M P+++T + ++ Y G +
Sbjct: 472 DRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMD 531
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
EA KL M + PD T+NT+++ R +D ++++ M G
Sbjct: 532 EATKLLASMVSVG------------MKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579
Query: 308 L 308
+
Sbjct: 580 V 580
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/329 (20%), Positives = 142/329 (43%), Gaps = 27/329 (8%)
Query: 41 FKTGTLER--------WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSA 92
FK G L++ D + P++V Y++++ A + + + A VL + + G P+
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269
Query: 93 TTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVED 151
TY ++ + G+ F +K+ + P+ + Y L++ L + G+ EA +
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
M +RG+ Y L + + G E +D + + P ++ LI A G
Sbjct: 330 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGK 389
Query: 212 IQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270
+ A +F++M+ +P+ VT ++ + G E+AM+ F++M ++
Sbjct: 390 VDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDER---------- 439
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-- 328
+ P +N+++ + +WD + + ML G+ + +I + G+V
Sbjct: 440 --LSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE 497
Query: 329 --ELLEITWEHLARADRITPPALIKERFC 355
+L ++ + D IT LI + +C
Sbjct: 498 SEKLFDLMVRIGVKPDIITYSTLI-DGYC 525
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/255 (20%), Positives = 96/255 (37%), Gaps = 58/255 (22%)
Query: 74 EGAFWVLQQLKQQGQKPSATTYGLVMEVM--------LACGKYNLVYEFFRKVQKSYIPN 125
E A V +L ++G+ A+ YGL + A +YN R PN
Sbjct: 36 EDARHVFDELLRRGR--GASIYGLNCALADVARHSPAAAVSRYN---RMARAGADEVTPN 90
Query: 126 ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMD 185
Y +L+ + G+ D +A+ ++ ++G + A + + + LC+ + +A MD
Sbjct: 91 LCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDA---MD 147
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHG 244
+ +M C PN+ + NI++K +
Sbjct: 148 -------------------------------IVLRRMTQLGCIPNVFSYNILLKGLCDDN 176
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
+EA++L Q M +D G PD+ ++ T+++ E D Y ML
Sbjct: 177 RSQEALELLQMMPDDG----------GDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEML 226
Query: 305 HHGLHFNAKRHLRMI 319
G+ N + +I
Sbjct: 227 DRGILPNVVTYSSII 241
>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
Length = 1041
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 88/371 (23%), Positives = 154/371 (41%), Gaps = 47/371 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
P VAY ++ + G E F V + M +L K K G +E+ D
Sbjct: 339 PGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADAL 398
Query: 53 L--------EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L +PD YN ++ ++ + +L ++K+ P+A T G+++ +
Sbjct: 399 LNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCR 458
Query: 105 CGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G F V PNA+ Y L+ +EG+ EAV ++ M+++G+
Sbjct: 459 HGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLC 518
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + LC + K EEA + ++ + KP V +Y LI SG +Q A F +M
Sbjct: 519 YNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEML 578
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNH-------------------- 262
+PN V C ++ Y + G EA +F+ M S H
Sbjct: 579 GCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQ 638
Query: 263 ----INREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRM 318
+ E+ +KGLV PD++T+N+++ + +++ M G+ N + +
Sbjct: 639 GAMELLSEFLEKGLV-PDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNAL 697
Query: 319 ILDASRAGKVE 329
I +AG++E
Sbjct: 698 INGLCKAGEIE 708
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/374 (20%), Positives = 158/374 (42%), Gaps = 36/374 (9%)
Query: 34 RSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSAT 93
R+ K+ K E + P +V YN V+ R + + AF + + + ++G
Sbjct: 248 RAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVF 307
Query: 94 TYGLVMEVMLA---CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVE 150
TY ++++ C + L+ E K P +AY L++ R+G + EA E
Sbjct: 308 TYSILIDGFGKQKRCTEAKLMLE--EMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKE 365
Query: 151 DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG 210
+M RG+ + Y L + +C G E+A ++++ V KP +Y +I+ L
Sbjct: 366 EMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQ 425
Query: 211 NIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA------------ 257
N + ++M K+ P TC +++ HG E+A ++F+ M
Sbjct: 426 NTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYT 485
Query: 258 ------------EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
+++ I + DKKG V PD+ +N+++ ++ ++ + M+
Sbjct: 486 TLIKGHVQEGRFQEAVRILKVMDKKG-VQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIE 544
Query: 306 HGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA----DRITPPALIKERFCNRLENK 361
GL N + +I ++G++++ + ++ + + + ALI + +C
Sbjct: 545 RGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALI-DGYCKEGSTT 603
Query: 362 DYGSAISCLVSHPV 375
+ S C++ V
Sbjct: 604 EATSIFRCMLGRSV 617
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/388 (20%), Positives = 155/388 (39%), Gaps = 71/388 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ Q G +E ++ M K G ++PD++ YN+V+
Sbjct: 479 PNAVIYTTLIKGHVQEGRFQEAVRILKVMD-------KKG--------VQPDVLCYNSVI 523
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK------- 117
+ ++ E A L ++ ++G KP+ TYG ++ G+ + +F++
Sbjct: 524 IGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIA 583
Query: 118 -----------------------------VQKSYIPNALAYKVLVNTLWREGKTDEAVSA 148
+ +S P+ Y L++ L R GK A+
Sbjct: 584 PNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMEL 643
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+ + +G+V Y + C G +A + +C+ P +++Y LI
Sbjct: 644 LSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCK 703
Query: 209 SGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
+G I+ A +F+ + + N VT ++ Y + G +A +LF EM
Sbjct: 704 AGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMT---------- 753
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA-SRAG 326
KG V PD + ++ ++D C E + ++ + G F + L ++D ++G
Sbjct: 754 -LKG-VPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKG--FASTSSLNALMDGFCKSG 809
Query: 327 KV----ELLEITWEHLARADRITPPALI 350
KV +LLE + + D +T LI
Sbjct: 810 KVIEANQLLEDMVDKHVKPDHVTYTILI 837
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 135/324 (41%), Gaps = 39/324 (12%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PD+ Y+A+++ +R + +GA +L + ++G P TY ++ G +
Sbjct: 617 VHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAF 676
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ + QK PN + Y L+N L + G+ + A + + +G+ +A Y +
Sbjct: 677 QLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGY 736
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF--NQMKNFCSPN 229
C +G +A D++ P Y+ LI C GN + A +F + K F S +
Sbjct: 737 CKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTS 796
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD-ACA 288
+ N ++ + + G EA +L ++M + V PD T+ ++D C
Sbjct: 797 --SLNALMDGFCKSGKVIEANQLLEDMVDKH------------VKPDHVTYTILIDYHCK 842
Query: 289 ------AEKRWDDLE--------LVYKRMLHHGLHFNAKR-HLRMILDASRAGKVELLEI 333
AE+ + D++ L Y +L G + +R + + D A +E +
Sbjct: 843 TGFLKEAEQFFVDMQKRNLMPNALTYTALL-SGYNMAGRRSEMFALFDEMIAKDIEPDGV 901
Query: 334 TWE-----HLARADRITPPALIKE 352
TW HL D + L+ +
Sbjct: 902 TWSVMIDAHLKEGDHVKTLKLVDD 925
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 122/298 (40%), Gaps = 53/298 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y SI + G I + F + + M + P+I+ YNA++
Sbjct: 654 PDVFTYNSIISGFCKQGGIGKAFQLHEYM---------------CQKGISPNIITYNALI 698
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
N + + E A + + +G +A TY +++ G + + F ++ K
Sbjct: 699 NGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVP 758
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P++ Y L++ +EG T++A+S + ++G +++L L C +GK EA
Sbjct: 759 PDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNA-LMDGFCKSGKVIEANQL 817
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF------NQMKNFCS---------- 227
++ + KP V+YT LI +G ++ A F N M N +
Sbjct: 818 LEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNM 877
Query: 228 --------------------PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
P+ VT ++M+ A+L+ G + +KL +M + ++++
Sbjct: 878 AGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSK 935
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 120/276 (43%), Gaps = 23/276 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHI---KELFDVID---------SMRSLPKKKFKTGTLER---- 48
P+ + Y ++ L +AG I +ELFD I + ++ K+G L +
Sbjct: 689 PNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRL 748
Query: 49 WDPR----LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+D + PD VY+A+++ C + E A + + Q+G S ++ +M+
Sbjct: 749 FDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGF-ASTSSLNALMDGFCK 807
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK + V K P+ + Y +L++ + G EA DM++R ++ +A
Sbjct: 808 SGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALT 867
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN-IQNAAYIFNQM 222
Y L AG+ E D++ +P V+++ +I A L G+ ++ + + +
Sbjct: 868 YTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDML 927
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
K + + C++++ E +K+ +++ E
Sbjct: 928 KKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEE 963
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 66/330 (20%), Positives = 119/330 (36%), Gaps = 50/330 (15%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
VV+ +++ ++ ++ A K+ G ++ +L K L + F+
Sbjct: 167 VVFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNG 226
Query: 118 -VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG- 175
++ + + + Y L+N +R G E + +ME +G S Y + LC AG
Sbjct: 227 MLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGE 286
Query: 176 ----------------------------------KCEEALMQMDKICKVANKPLVVSYTG 201
+C EA + ++++ KP V+YT
Sbjct: 287 VDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTA 346
Query: 202 LIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
LI + G+ A + +M NL T N +VK + G E+A L EM
Sbjct: 347 LIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVG 406
Query: 261 NHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMIL 320
+ PD T+N M++ E+ ++ + M L A +I
Sbjct: 407 ------------IKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIIN 454
Query: 321 DASRAGKVELLEITWEHLARADRITPPALI 350
R G +E +E + + P A+I
Sbjct: 455 GLCRHGSIEDASRVFEIMVSLG-VKPNAVI 483
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/210 (19%), Positives = 92/210 (43%), Gaps = 2/210 (0%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D ++PD V Y +++ + + A ++++ P+A TY ++ G+ +
Sbjct: 823 DKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRS 882
Query: 110 LVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
++ F + + K P+ + + V+++ +EG + + V+DM ++G S + + L
Sbjct: 883 EMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLI 942
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CS 227
LC E L ++KI + + + + L++ +G + AA + M F
Sbjct: 943 DPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSMVRFKWV 1002
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
P+ N ++ + E A ++MA
Sbjct: 1003 PDSTELNDLINVEQDSTDSENAGDFLKQMA 1032
>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
Length = 1059
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 134/300 (44%), Gaps = 16/300 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ D+ + +++ R ++ A +L ++ + G +PS T G ++ ++
Sbjct: 646 ISHDLYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAV 705
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ + + PN + Y ++N L + + A+ ME++GIV A Y L L
Sbjct: 706 SLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGL 765
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C++G+ +A + + K P V+ +T LI + GN+ A ++ +M + PN+
Sbjct: 766 CNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNI 825
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T N ++ + G +A +F M KG PD+ T+NT++
Sbjct: 826 LTYNSLINGFCIQGRLGDAKHMFDLMVS-----------KG-CFPDVVTYNTLITGFCKS 873
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
KR +D ++ M H GL +A + +I +AGK+ + + + + D PP ++
Sbjct: 874 KRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRM--VDCGVPPDIV 931
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 117/283 (41%), Gaps = 29/283 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V S+ Q +E ++DSM L LEP++V+YN V+
Sbjct: 683 PSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELG---------------LEPNVVIYNTVI 727
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + + A + ++++G A TY ++ + G++ R + K I
Sbjct: 728 NGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKID 787
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + L++T +EG EA + ++M RR + + Y L C G+ +A
Sbjct: 788 PNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHM 847
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
D + P VV+Y LI S +++ +F +M + + T N ++ Y +
Sbjct: 848 FDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQ 907
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
G A K+F M + V PDI T+N +LD
Sbjct: 908 AGKLNVAQKVFNRMVDCG------------VPPDIVTYNILLD 938
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/344 (21%), Positives = 143/344 (41%), Gaps = 63/344 (18%)
Query: 38 KKKFKTGTLE--RWDPRLE-----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLK 84
++K +TG L R++ L+ P +V + +L A +++E + QQ++
Sbjct: 33 REKLRTGFLHSIRFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQME 92
Query: 85 QQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK--------------------------- 117
G ++ +++ C + +L K
Sbjct: 93 LFGISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIH 152
Query: 118 ---------VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD-L 167
V+ Y PN + Y L++ L + G + A+ + +ME++G + + + Y+ L
Sbjct: 153 DAFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTL 212
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
LC +G+ +A + + K P V ++T LI A + GN+ A ++ QM ++
Sbjct: 213 LTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSI 272
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
PN VT N ++ HG A K F MA KG P++ T+NT+++
Sbjct: 273 GPNTVTYNSLINGLCMHGRLYHAKKTFDLMAS-----------KG-CFPNVVTYNTLING 320
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+R +D +++RM GL + + +I + GK+ +
Sbjct: 321 FCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRV 364
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 97/246 (39%), Gaps = 37/246 (15%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK-YNL 110
R+ PD+ + A+++A V++ + A + +Q+ Q P+ TY ++ + G+ Y+
Sbjct: 236 RINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHA 295
Query: 111 VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
F K PN + Y L+N + + ++ + + M R G+VG Y L
Sbjct: 296 KKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHG 355
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN------ 224
C GK A + P ++++ L+ +G I +A FN M++
Sbjct: 356 YCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLG 415
Query: 225 -----------------------FC-------SPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
FC P+ T IM+ ++G EA +LF+
Sbjct: 416 IVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFR 475
Query: 255 EMAEDS 260
M ED
Sbjct: 476 RMKEDG 481
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/346 (21%), Positives = 128/346 (36%), Gaps = 28/346 (8%)
Query: 8 VAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNAC 67
+ Y VT G H L + I SL K+G EP++VVYN +++
Sbjct: 129 LGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSG--------YEPNVVVYNTLIDCL 180
Query: 68 VRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PN 125
+ A +L +++++G+ TY ++ + G++ R + K I P+
Sbjct: 181 CKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPD 240
Query: 126 ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMD 185
+ L++ ++G DEA + M + I + Y L LC G+ A D
Sbjct: 241 VFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFD 300
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHG 244
+ P VV+Y LI S +++ +F +M + + T N ++ Y + G
Sbjct: 301 LMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVG 360
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
A +F M V PDI T +L + + M
Sbjct: 361 KLRVAKDIFSWMVSCG------------VTPDIITHCILLHGLCVNGEIGSAMVKFNDMR 408
Query: 305 HHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR--ADRITPPA 348
+ + MI +A KVE WE R + + P A
Sbjct: 409 SGEKYLGIVAYNIMIHGLCKADKVEE---AWELFCRLPVEGVKPDA 451
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/255 (20%), Positives = 109/255 (42%), Gaps = 17/255 (6%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V Y ++ L +G D +R + K+K ++P+++ + A+++
Sbjct: 754 DAVTYNTLISGLCNSGRWT---DAARLLRDMVKRK------------IDPNVIFFTALID 798
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKSYIP 124
V+ A + +++ ++ P+ TY ++ G+ F V K P
Sbjct: 799 TFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFP 858
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ + Y L+ + + ++ + +M +G+VG A Y L C AGK A
Sbjct: 859 DVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVF 918
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
+++ P +V+Y L+ ++G I+ A + + KN +++T NI+++ +
Sbjct: 919 NRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRN 978
Query: 244 GLFEEAMKLFQEMAE 258
+EA LF+ +
Sbjct: 979 DKVKEAWCLFRSLTR 993
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 22/226 (9%)
Query: 2 SSYPDTVAYRSIAVTL---GQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIV 58
S +P+ + Y S+ G+ G K +FD++ S K F PD+V
Sbjct: 820 SVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVS-----KGCF-------------PDVV 861
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RK 117
YN ++ + K+ E + ++ QG A TY ++ GK N+ + F R
Sbjct: 862 TYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRM 921
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
V P+ + Y +L++ L GK ++A+ VED+++ + Y + + +C K
Sbjct: 922 VDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKV 981
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+EA + + K ++Y +I +G + A + +MK
Sbjct: 982 KEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMK 1027
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 22/223 (9%)
Query: 5 PDTVAYRSIAVTL---GQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
P+TV Y S+ L G+ H K+ FD++ S K F P++V YN
Sbjct: 274 PNTVTYNSLINGLCMHGRLYHAKKTFDLMAS-----KGCF-------------PNVVTYN 315
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQK 120
++N + ++ E + Q++ ++G TY ++ GK + + F V
Sbjct: 316 TLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSC 375
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
P+ + + +L++ L G+ A+ DM Y + LC A K EEA
Sbjct: 376 GVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEA 435
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
++ KP +YT +I +G + A +F +MK
Sbjct: 436 WELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMK 478
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D + PDIV YN +L+ + E A +++ L++ TY ++++ M K
Sbjct: 923 DCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVK 982
Query: 110 LVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
+ FR + + + +A+AY +++ L R G EA M+ G + S +Y +
Sbjct: 983 EAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFMPSERIYDETL 1042
Query: 169 R 169
R
Sbjct: 1043 R 1043
>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
Length = 1024
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 134/349 (38%), Gaps = 68/349 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y + + G I+E ++D M + PDI YNA++
Sbjct: 471 PNVVVYSILIMAYASEGRIEEARRLLDGMSC---------------SGVAPDIFCYNAII 515
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + E A L +++ +G KP A T+G + GK ++F + + +
Sbjct: 516 SCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLM 575
Query: 124 PNALAYKVLVNT-----------------------------------LWREGKTDEAVSA 148
PN Y VL+N L + G+ EA+
Sbjct: 576 PNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKV 635
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+++ +G+V Y L C G+ E+A D++C P + Y L+
Sbjct: 636 FSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCK 695
Query: 209 SGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
SG+IQ A +F+ M + P+ VT + M+ Y + EA LF EM
Sbjct: 696 SGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMP---------- 745
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG----LHFNA 312
KG V P + +N ++ C E + +++ ML G L FN
Sbjct: 746 -SKG-VQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNT 792
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 115/247 (46%), Gaps = 21/247 (8%)
Query: 46 LERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L+ + R L P V Y A++N K A +L+++ G KP+ Y +++ +
Sbjct: 426 LDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYAS 485
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ + S + P+ Y +++ L + GK +EA + + +++ RG+ A
Sbjct: 486 EGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVT 545
Query: 164 YYDLARCLCSAGKCEEALMQMDKICK---VANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
+ GK EA D++ + N PL YT LI +GN+ A IF
Sbjct: 546 FGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPL---YTVLINGHFKAGNLMEALSIFR 602
Query: 221 QMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
++ P++ TC+ + L++G +EA+K+F E+ E KGLV PD++T
Sbjct: 603 RLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKE-----------KGLV-PDVFT 650
Query: 280 FNTMLDA 286
+++++
Sbjct: 651 YSSLISG 657
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/344 (20%), Positives = 132/344 (38%), Gaps = 33/344 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLERWDP- 51
PD V + + + + G + E D M L FK G L
Sbjct: 541 PDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSI 600
Query: 52 --RLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
RL PD+ +A ++ ++ + + A V +LK++G P TY ++
Sbjct: 601 FRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCK 660
Query: 105 CGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ +E ++ K PN Y LV+ L + G A + M +G+ +
Sbjct: 661 QGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVT 720
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + C + EA ++ +P Y L+ C G+++ A +F +M
Sbjct: 721 YSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREML 780
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
++ N ++ Y + +EA +LFQEM ++PD T+ T+
Sbjct: 781 QKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQ------------IMPDHVTYTTV 828
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
+D + ++ L++K M L + + ++ ++ G+
Sbjct: 829 IDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQ 872
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/320 (20%), Positives = 124/320 (38%), Gaps = 49/320 (15%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
+E + L P+ +Y+ V+ + + A + + + ++G P+ TY ++ +
Sbjct: 252 IEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRA 311
Query: 106 GKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
+ N F ++QK+ + P+ A L++ REG DE + + M GI + Y
Sbjct: 312 KRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITY 371
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK- 223
L LC GK E+A + + + KP ++ LI+ N+ A + ++M+
Sbjct: 372 NVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEK 431
Query: 224 ---------------NFC--------------------SPNLVTCNIMVKAYLEHGLFEE 248
C PN+V +I++ AY G EE
Sbjct: 432 RNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEE 491
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
A +L M+ V PDI+ +N ++ + + ++ + GL
Sbjct: 492 ARRLLDGMSCSG------------VAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGL 539
Query: 309 HFNAKRHLRMILDASRAGKV 328
+A IL S+ GK+
Sbjct: 540 KPDAVTFGAFILGYSKTGKM 559
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/274 (20%), Positives = 111/274 (40%), Gaps = 21/274 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERW--- 49
PD Y S+ + G +++ F++ D M +L K+G ++R
Sbjct: 646 PDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKL 705
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ LEPD V Y+ +++ + + AF + ++ +G +P + Y ++
Sbjct: 706 FDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCK 765
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G FR++ + L++ L++ + K EA ++M + I+ Y
Sbjct: 766 EGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTY 825
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-K 223
+ C AGK EEA + ++ + V+YT L+ G +F +M
Sbjct: 826 TTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVA 885
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
P+ VT +++ A+ + EA KL E+
Sbjct: 886 KGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVV 919
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/286 (19%), Positives = 113/286 (39%), Gaps = 51/286 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD+V Y ++ ++ ++ E F + M P K ++P VYNA++
Sbjct: 716 PDSVTYSTMIDGYCKSENVAEAFSLFHEM---PSKG------------VQPHSFVYNALV 760
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ C + E A + +++ Q+G + + L+ +C F + K +P
Sbjct: 761 HGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMP 820
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ + Y +++ + GK +EA ++M+ R ++ Y L G+ E
Sbjct: 821 DHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALF 880
Query: 185 DKICKVANKPLVVSYTGLIQA---------------------CLDSGNIQN--------- 214
+K+ KP V+Y +I A L G I +
Sbjct: 881 EKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKR 940
Query: 215 -----AAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
A+ + ++M P+L CN +V+++ E G +EA ++F+
Sbjct: 941 EDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFE 986
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 74/369 (20%), Positives = 138/369 (37%), Gaps = 81/369 (21%)
Query: 35 SLPKKKFKTGTLERW--------DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ 86
SL K K G +E + D ++ D+ Y ++ A + GA VL ++ ++
Sbjct: 198 SLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEK 257
Query: 87 GQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAV 146
G P N Y +++ + + G DEAV
Sbjct: 258 GLNP----------------------------------NEFIYSLVIEGMCQVGDIDEAV 283
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
M +G+V + Y + LC A + EA + +++ K KP + + LI
Sbjct: 284 ELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGF 343
Query: 207 LDSGNIQNAAYIFNQMKNFCSP-NLVTCNIMVKAYLEHGLFEEAMKLFQEMAE------- 258
+ G+I I + M + P NL+T N+++ + G E+A ++ + M
Sbjct: 344 MREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNS 403
Query: 259 -----------DSNHINR------EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+++ R E +K+ LV P ++ M++ K + +
Sbjct: 404 RTFCLLIEGYCREHNMGRALELLDEMEKRNLV-PSAVSYGAMINGLCHCKDLSLANKLLE 462
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENK 361
+M GL N + +I+ + G++E E D ++ + + FC
Sbjct: 463 KMTFSGLKPNVVVYSILIMAYASEGRIE------EARRLLDGMSCSGVAPDIFC------ 510
Query: 362 DYGSAISCL 370
Y + ISCL
Sbjct: 511 -YNAIISCL 518
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 5/179 (2%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + L D V Y +++ + Q F + +++ +G KP TYGLV + C
Sbjct: 847 EMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLV--IYAHCK 904
Query: 107 KYNLVYEFFRK---VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
+ NLV F + V K + + +L+ L + EA +++M G+ S A
Sbjct: 905 EDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAA 964
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
L R AGK +EA + + + P + L+ L+ + ++A + Q+
Sbjct: 965 CNTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQL 1023
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/264 (17%), Positives = 103/264 (39%), Gaps = 14/264 (5%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
VV++ ++++ R + A V K S +++ +L CG L ++ +
Sbjct: 159 VVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNG 218
Query: 118 VQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
+ + + + Y LV L + G A + +M+ +G+ + +Y + +C G
Sbjct: 219 MLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGD 278
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNI 235
+EA+ + + P +YT + + + A F +M K P+ C+
Sbjct: 279 IDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSA 338
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
++ ++ G +E +++ M IN + T+N ++ + +
Sbjct: 339 LIDGFMREGDIDEVLRIKDVMVSCGIPIN------------LITYNVLIHGLCKFGKMEK 386
Query: 296 LELVYKRMLHHGLHFNAKRHLRMI 319
+ K M+ G N++ +I
Sbjct: 387 AAEILKGMVTLGCKPNSRTFCLLI 410
>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
Length = 816
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 134/310 (43%), Gaps = 27/310 (8%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+ PD +Y + +L G + D++ M + GT+ PD+V Y
Sbjct: 178 LGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMA-------EGGTV------CSPDVVAY 224
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQ 119
N V++ + A + +++ Q+G P TY V+ + + F R+ V
Sbjct: 225 NTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVN 284
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K +P+ Y L+ G+ EAV ++M R+ I+ L LC GK +E
Sbjct: 285 KGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKE 344
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A D + P V SYT ++ G + + +F+ M + +P++ T N+++K
Sbjct: 345 ARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIK 404
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
AY G+ ++AM +F EM R++ K P + T+ T++ A + DD
Sbjct: 405 AYANCGMLDKAMIIFNEM--------RDHGVK----PHVVTYMTVIAALCRIGKMDDAME 452
Query: 299 VYKRMLHHGL 308
+ +M+ G+
Sbjct: 453 KFNQMIDQGV 462
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 128/332 (38%), Gaps = 34/332 (10%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSM----------------RSLPKKKFKTGT 45
S PD VA ++ +L + G IKE DV D+M K
Sbjct: 321 SILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDM 380
Query: 46 LERWDPRL----EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
+ +D L PDI +N ++ A + A + +++ G KP TY V+
Sbjct: 381 TDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAA 440
Query: 102 MLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ GK + E F + + + +P+ AY L+ G +A + ++ G+
Sbjct: 441 LCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLD 500
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
+ + LC G+ +A D V P V Y L+ G ++ A +F+
Sbjct: 501 IVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFD 560
Query: 221 QMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
M + PN+V +V Y + G +E + LF+EM + KG + P
Sbjct: 561 AMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQ-----------KG-IKPSTIL 608
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
+N ++D R ++ + M G+ N
Sbjct: 609 YNIIIDGLFEAGRTVPAKVKFHEMTESGIAMN 640
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 105/232 (45%), Gaps = 10/232 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD VVYN +++ + E A V + G +P+ YG ++ G+ +
Sbjct: 532 LHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGL 591
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
FR+ +QK P+ + Y ++++ L+ G+T A +M GI + Y + R L
Sbjct: 592 SLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGL 651
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
+EA+ ++ + K +++ +I + ++ A +F + ++ P
Sbjct: 652 FKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCA 711
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAE-----DS---NHINREYDKKGLVI 274
VT +IM+ L+ GL EEA +F M DS NH+ RE KK ++
Sbjct: 712 VTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIV 763
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 124/295 (42%), Gaps = 24/295 (8%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
DIV + +++N + + A + G P A Y ++M+ GK F
Sbjct: 500 DIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVF 559
Query: 116 RKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ + I PN + Y LVN + G+ DE +S +M ++GI S LY + L A
Sbjct: 560 DAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEA 619
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
G+ A ++ ++ + +Y+ +++ + A ++F +++ +++T
Sbjct: 620 GRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITL 679
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N M+ + EEA LF ++ + GLV P T++ M+ E
Sbjct: 680 NTMIAGMFQTRRVEEAKDLFASIS-----------RSGLV-PCAVTYSIMITNLLKEGLV 727
Query: 294 DDLELVYKRMLHHGLHFNAK------RHLRMILDASRAG----KVELLEITWEHL 338
++ E ++ M + G +++ R L + RAG K++ + EHL
Sbjct: 728 EEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHL 782
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/343 (19%), Positives = 130/343 (37%), Gaps = 64/343 (18%)
Query: 51 PR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
PR L P Y +++ C R + E A QL + G + A +++ + +
Sbjct: 106 PRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTD 165
Query: 110 LVYEFF--RKVQKSYIPNALAYKVLVNTL------------------------------- 136
+ R + +P+ +Y +L+ +L
Sbjct: 166 EALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYN 225
Query: 137 ------WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
++EG ++A ++M +RGI Y + LC A ++A + ++
Sbjct: 226 TVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNK 285
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEA 249
P +Y LI +G + A +F +M + P++V N ++ + ++G +EA
Sbjct: 286 GVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEA 345
Query: 250 MKLFQEMAEDSNHIN--------REYDKKGLVI---------------PDIYTFNTMLDA 286
+F MA + + Y KG ++ PDIYTFN ++ A
Sbjct: 346 RDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKA 405
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
A D +++ M HG+ + ++ +I R GK++
Sbjct: 406 YANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMD 448
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 103/241 (42%), Gaps = 17/241 (7%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD V Y + G +++ V D+M S +EP++V Y +
Sbjct: 533 HPDAVVYNMLMDGYCLVGKMEKALRVFDAMVS---------------AGIEPNVVGYGTL 577
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
+N + + + + +++ Q+G KPS Y ++++ + G+ F ++ +S I
Sbjct: 578 VNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGI 637
Query: 124 P-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
N Y +++ L++ DEA+ +++ + + + + EEA
Sbjct: 638 AMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKD 697
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYL 241
I + P V+Y+ +I L G ++ A +F+ M+N C P+ N +V+ L
Sbjct: 698 LFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELL 757
Query: 242 E 242
+
Sbjct: 758 K 758
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/395 (18%), Positives = 145/395 (36%), Gaps = 70/395 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y ++ G KE V MR + PD+V N ++
Sbjct: 289 PDNWTYNNLIYGYSSTGQWKEAVRVFKEMRR---------------QSILPDVVALNTLM 333
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + + A V + +GQ P +Y +++ G + + F + I
Sbjct: 334 GSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIA 393
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + VL+ G D+A+ +M G+ Y + LC GK ++A+ +
Sbjct: 394 PDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEK 453
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ----------------MKNFCS 227
+++ P +Y LIQ G++ A + ++ + N C
Sbjct: 454 FNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCK 513
Query: 228 --------------------PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
P+ V N+++ Y G E+A+++F M
Sbjct: 514 LGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG------- 566
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG- 326
+ P++ + T+++ R D+ +++ ML G+ + + +I AG
Sbjct: 567 -----IEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGR 621
Query: 327 ----KVELLEITWEHLARADRITPPALIKERFCNR 357
KV+ E+T +A ++ T +++ F NR
Sbjct: 622 TVPAKVKFHEMTESGIA-MNKCTYSIVLRGLFKNR 655
>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
Length = 581
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 136/328 (41%), Gaps = 29/328 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y + L + G I E ++I M R + P+I+ YN+ L
Sbjct: 149 PNVVTYSVLINGLCKVGRIDEARELIQEM-------------TRKSCDVLPNIITYNSFL 195
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQK--PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY 122
+ ++ A +++ L+ + P T+ +++ + CG+ + + Y
Sbjct: 196 DGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACND-DMIAGGY 254
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+PN + Y LVN L + K + A + +E M +G+ Y L C A + +EAL
Sbjct: 255 VPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALE 314
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYL 241
+ + P VV++ +I S A I Q+ N P+ VT NI++
Sbjct: 315 LLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGAC 374
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G FE+A LF+EM + PD+ TF ++D + + +
Sbjct: 375 KAGNFEQASALFEEMVAKNMQ------------PDVMTFGALIDGLCKAGQVEAARDILD 422
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVE 329
M + G+ N + ++ ++G++E
Sbjct: 423 LMGNLGVPPNVVTYNVLVHGLCKSGRIE 450
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 112/250 (44%), Gaps = 15/250 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V YNA++N + + E A +++ + +G P TY ++++ + + E
Sbjct: 256 PNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALEL 315
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ + PN + + +++ L + ++ EA + R +V + L C
Sbjct: 316 LHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACK 375
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
AG E+A +++ +P V+++ LI +G ++ A I + M N PN+VT
Sbjct: 376 AGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVT 435
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEK 291
N++V + G EE + +EM +P+ T+ +++ A C A +
Sbjct: 436 YNVLVHGLCKSGRIEEPCEFLEEMVSSG------------CVPESMTYGSLVYALCRASR 483
Query: 292 RWDDLELVYK 301
D L+LV K
Sbjct: 484 TDDALQLVSK 493
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/346 (21%), Positives = 144/346 (41%), Gaps = 65/346 (18%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P IV YN ++N + + + ++L ++G P TY +++ + G
Sbjct: 77 VAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEAR 136
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG--IVGSAALYYDLAR 169
+ + +PN + Y VL+N L + G+ DEA +++M R+ ++ + Y
Sbjct: 137 RLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLD 196
Query: 170 CLCSAGKCEEA--LMQ-------------------MDKICKVANK--------------P 194
LC EA LM+ +D +CK P
Sbjct: 197 GLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNDDMIAGGYVP 256
Query: 195 LVVSYTGLIQACLDSGNIQNA-AYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253
VV+Y L+ + ++ A A I + + +P+++T +++V A+ + +EA++L
Sbjct: 257 NVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELL 316
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLEL---VYKRML-HHGL 308
MA P++ TFN+++D C +++ + ++ VY RML +
Sbjct: 317 HGMASRG------------CTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKV 364
Query: 309 HFNAKRHLRMILDASRAGKVELLEITWEHLA----RADRITPPALI 350
FN +I A +AG E +E + + D +T ALI
Sbjct: 365 TFNI-----LIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALI 405
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/278 (19%), Positives = 118/278 (42%), Gaps = 29/278 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y + +A + E +++ M S P++V +N+++
Sbjct: 291 PDVITYSVLVDAFCKASRVDEALELLHGMAS---------------RGCTPNVVTFNSII 335
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + AF + Q+ + P T+ +++ G + F + V K+
Sbjct: 336 DGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQ 395
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + L++ L + G+ + A ++ M G+ + Y L LC +G+ EE
Sbjct: 396 PDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEF 455
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLE 242
++++ P ++Y L+ A + +A + +++K+F P+ VT NI+V +
Sbjct: 456 LEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWK 515
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
G E+A+ + +EM + PD +TF
Sbjct: 516 SGKTEQAITVLEEMVGKGHQ------------PDSFTF 541
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 114/283 (40%), Gaps = 55/283 (19%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQ-QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK- 117
YN VL + R + A + + ++ + G P+ TY ++ + + E F +
Sbjct: 48 YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL 107
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
V++ + P+ + Y L+++L + G +EA M RG V + Y L LC G+
Sbjct: 108 VKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRI 167
Query: 178 EEA--LMQ-------------------MDKICK------------------VANKPLVVS 198
+EA L+Q +D +CK + P V+
Sbjct: 168 DEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVT 227
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
++ LI G A + + PN+VT N +V + E A + + M +
Sbjct: 228 FSTLIDGLCKCGQTDEACN-DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVD 286
Query: 259 DSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVY 300
KG V PD+ T++ ++DA C A + + LEL++
Sbjct: 287 -----------KG-VTPDVITYSVLVDAFCKASRVDEALELLH 317
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 75/161 (46%), Gaps = 1/161 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PD++ + A+++ + Q E A +L + G P+ TY +++ + G+
Sbjct: 394 MQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPC 453
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
EF + V +P ++ Y LV L R +TD+A+ V ++ G Y L L
Sbjct: 454 EFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGL 513
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI 212
+GK E+A+ ++++ ++P ++ SGN+
Sbjct: 514 WKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNL 554
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 69/166 (41%), Gaps = 15/166 (9%)
Query: 196 VVSYTGLIQACLDSGNIQNAAYIF--NQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253
V Y ++Q+ +G A IF ++ +P +VT N ++ + M+LF
Sbjct: 45 VADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELF 104
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK 313
+E+ + +H PD+ T+NT++D+ ++ ++ M G N
Sbjct: 105 EELVKRGHH------------PDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVV 152
Query: 314 RHLRMILDASRAGKV-ELLEITWEHLARADRITPPALIKERFCNRL 358
+ +I + G++ E E+ E ++ + P + F + L
Sbjct: 153 TYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGL 198
>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
Length = 570
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/339 (19%), Positives = 152/339 (44%), Gaps = 29/339 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y ++ L + G ++E D++ + D PD+V Y +++
Sbjct: 198 PTIATYNALLNGLCKMGRLEEAIDLLRKI---------------VDNGCTPDVVTYTSLI 242
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + K+ A+ + +++ +G Y ++ +L GK ++ + + +
Sbjct: 243 DGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCV 302
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + +++ L + G+ AV + ME RG+ + +Y L LC A K + AL
Sbjct: 303 PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 362
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ ++ K P ++Y LI SG+++ A F++M + C P++ T NI+V + +
Sbjct: 363 LAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCK 422
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + A +F +M+ S+H + P++ T+ T++ ++ L ++
Sbjct: 423 AGNTDAACGVFDDMS--SSHCS----------PNVVTYGTLISGLCKRRQLTKASLYFQH 470
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
M G ++ + ++ ++GK+E + ++ + R+
Sbjct: 471 MKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERS 509
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 125/303 (41%), Gaps = 19/303 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ-GQKPSATTYGLVMEVMLACGKYNLVYE 113
PD+ +N ++ ++ E AF V++++++ G PS T+ LV+ + GK +
Sbjct: 92 PDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMD 151
Query: 114 FFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F + + Y +V+ L + K +AV+ +E + G + A Y L LC
Sbjct: 152 HFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLC 211
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLV 231
G+ EEA+ + KI P VV+YT LI A +F +M + V
Sbjct: 212 KMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTV 271
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
+++ L+ G +A +++ M +PD+ T +TM+D
Sbjct: 272 CYTALIRGLLQAGKIPQASSVYKTMTSQG------------CVPDVVTLSTMIDGLCKAG 319
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEITWEHLARADRITPP 347
R ++K M GL N + +I +A K +E+L + D IT
Sbjct: 320 RIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYN 379
Query: 348 ALI 350
LI
Sbjct: 380 ILI 382
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 123/300 (41%), Gaps = 34/300 (11%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPK------------KKFKTGTLERWD 50
DTV Y ++ L QAG I + V +M S +P K + G R
Sbjct: 269 DTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIF 328
Query: 51 PRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
+E P+ VVY+A+++ + ++ + A +L Q+K+ P TY ++++ +
Sbjct: 329 KSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKS 388
Query: 106 GKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G FF + ++ P+ Y +LV+ + G TD A +DM + Y
Sbjct: 389 GDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTY 448
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
L LC + +A + + + P Y+ L+ SG ++ +F++M+
Sbjct: 449 GTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMER 508
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
N T ++ + +EA+ LF N I +E +P Y +N+++
Sbjct: 509 SGVANSQTRTRLIFHLCKANRVDEAVSLF-------NAIRKEG------MPHPYAYNSII 555
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 15/153 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + +AG+ V D M S P++V Y ++
Sbjct: 408 PDVYTYNILVSGFCKAGNTDAACGVFDDMSS---------------SHCSPNVVTYGTLI 452
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ +R+Q A Q +K++G P + Y +++ + GK F ++++S +
Sbjct: 453 SGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVA 512
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
N+ L+ L + + DEAVS + + G+
Sbjct: 513 NSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM 545
>gi|255660984|gb|ACU25661.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 376
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 137/286 (47%), Gaps = 15/286 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + ++ PD VVYNA+LN R + + F + + + +G + S +++ ++M +
Sbjct: 15 EIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDND 73
Query: 107 KYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K + V + ++KS ++ +++ Y +LV+ + G D+++ +E E++G V A Y
Sbjct: 74 KVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVVDAFAYS 133
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+ LC + A+ ++ + K KP Y LI + + ++A +F +M
Sbjct: 134 AMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTM 193
Query: 226 -CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
CSP ++T N ++ ++ +F EA L +E+ + KGL P + T++ ++
Sbjct: 194 HCSPTIITYNTLINGLCKNEMFGEAYNLVKELLD-----------KGLN-PGVITYSMLM 241
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ + + ++ ++ G + + H +I GK++L
Sbjct: 242 KGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQL 287
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 107/242 (44%), Gaps = 14/242 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D Y+A++N + + A VL + + G KP+A Y ++ ++ K+ F
Sbjct: 128 DAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVF 187
Query: 116 RKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
R++ + P + Y L+N L + EA + V+++ +G+ Y L + LC
Sbjct: 188 REMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLD 247
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
K E+AL +++ KP V + LI G +Q A ++ M + C+PNLV+
Sbjct: 248 HKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSH 307
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N +++ + + G A+ ++ + + + PDI ++N L + R
Sbjct: 308 NTLMEGFYKDGDIRNALVIWARILRNG------------LEPDIISYNITLKGLCSCNRI 355
Query: 294 DD 295
D
Sbjct: 356 SD 357
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/137 (18%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D L P ++ Y+ ++ + E A + Q+ +G KP + +++ + + G
Sbjct: 224 ELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVG 283
Query: 107 KYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K L + + + PN +++ L+ +++G A+ + R G+ Y
Sbjct: 284 KMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343
Query: 166 DLARCLCSAGKCEEALM 182
+ LCS + +A++
Sbjct: 344 ITLKGLCSCNRISDAIL 360
>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
Length = 1302
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 117/253 (46%), Gaps = 13/253 (5%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVN 134
A ++ ++ QG PS+ T V+E+ + G F ++ + +P++ +YK++V
Sbjct: 767 AVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVI 826
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194
+R+GK EA + M +RG + A + LC G A+ K+ + KP
Sbjct: 827 GCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKP 886
Query: 195 LVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253
++++T LI G+I+ A + +M +N PN+ T ++ + G E+A +LF
Sbjct: 887 NLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLF 946
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK 313
++ + P+++T+ +M+ E + + E+++ RM GL N
Sbjct: 947 LKLVRSDTY-----------KPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVN 995
Query: 314 RHLRMILDASRAG 326
+ +I +AG
Sbjct: 996 TYTTLINGHCKAG 1008
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 120/283 (42%), Gaps = 33/283 (11%)
Query: 13 IAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQ 72
IAV LG + + +FD + S+R + PD Y ++ C R +
Sbjct: 792 IAVELGLIEYAENVFDEM-SVRGVV-----------------PDSSSYKLMVIGCFRDGK 833
Query: 73 WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKV 131
+ A L + Q+G P T L++ + G N +FRK + + PN + +
Sbjct: 834 IQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTS 893
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA 191
L++ L ++G +A +E+M R G + + L LC G E+A K+ +
Sbjct: 894 LIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSD 953
Query: 192 N-KPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEA 249
KP V +YT +I + A +F++MK PN+ T ++ + + G F A
Sbjct: 954 TYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRA 1013
Query: 250 MKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+L M ++ +P+IYT+N +D+ + R
Sbjct: 1014 YELMNLMGDEG------------FMPNIYTYNAAIDSLCKKSR 1044
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/330 (20%), Positives = 134/330 (40%), Gaps = 41/330 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + + S+ L + G IK+ F++++ M + G W +P++ + A++
Sbjct: 886 PNLINFTSLIDGLCKKGSIKQAFEMLEEM-------VRNG----W----KPNVYTHTALI 930
Query: 65 NACVRRKQWEGAFWV-LQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSY 122
+ +R E AF + L+ ++ KP+ TY ++ K N F ++ ++
Sbjct: 931 DGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGL 990
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN Y L+N + G A + M G + + Y LC + EA
Sbjct: 991 FPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYE 1050
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
++K + V+YT LIQ +I A F +M K ++ NI++ A+
Sbjct: 1051 LLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFC 1110
Query: 242 EHGLFEEAMKLFQEMA--------EDSNHINREYDKKGLV---------------IPDIY 278
+E+ +LFQ + E + Y K+G + +PD +
Sbjct: 1111 RQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSF 1170
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
T+ +++ + D+ +Y+ M+ GL
Sbjct: 1171 TYGSLISGLCKKSMVDEACKLYEAMIDRGL 1200
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 13/208 (6%)
Query: 140 GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSY 199
G+ +EAV V DM+ +G+ S+ + G E A D++ P SY
Sbjct: 762 GRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSY 821
Query: 200 TGLIQACLDSGNIQNA-AYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
++ C G IQ A ++ ++ P+ TC +++ A E+GL A+ F++M +
Sbjct: 822 KLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMID 881
Query: 259 DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRM 318
P++ F +++D + + + M+ +G N H +
Sbjct: 882 LG------------FKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTAL 929
Query: 319 ILDASRAGKVELLEITWEHLARADRITP 346
I + G E + L R+D P
Sbjct: 930 IDGLCKRGWTEKAFRLFLKLVRSDTYKP 957
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 82/194 (42%), Gaps = 5/194 (2%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
E D+ + N ++ A R+K+ + + + Q + G P+ TY ++ G +L
Sbjct: 1095 FEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLAL 1154
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++F +++ +P++ Y L++ L ++ DEA E M RG+ LA
Sbjct: 1155 KYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEY 1214
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNL 230
C A++ ++ + K K + + L++ + AA F + ++ S +
Sbjct: 1215 CKRNDSANAMILLEPLDK---KLWIRTVRTLVRKLCSEKKVGVAALFFQKLLEKDSSADR 1271
Query: 231 VTCNIMVKAYLEHG 244
VT A E G
Sbjct: 1272 VTLAAFTTACSESG 1285
>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 579
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 128/277 (46%), Gaps = 18/277 (6%)
Query: 33 MRSLPKKKFKTGTLERWDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ 88
+ SL K KF T + + P++ ++ +++A + ++ + A +L + ++G
Sbjct: 154 IDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGV 213
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVS 147
KP+ TYG +M+ + N F VQ+ PN Y +++N L ++ + DEA++
Sbjct: 214 KPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMN 273
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
++M + I Y L LC GK +L +D++ + +++Y L+ A
Sbjct: 274 LFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALC 333
Query: 208 DSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
+ ++ A + ++K+ PN+ T ++ + G E+A +FQE+ + HI
Sbjct: 334 KNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHIT-- 391
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
++T+N M++ + +D+ + RM
Sbjct: 392 ----------VWTYNVMINGLCKKGLFDEALALLSRM 418
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 119/268 (44%), Gaps = 14/268 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P++V Y A+++ Q A + + Q+G +P+ Y +++ + + +
Sbjct: 213 VKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAM 272
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F+++ K P+ + Y +L++ L + GK ++ V++M G Y L L
Sbjct: 273 NLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHAL 332
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNL 230
C ++A+ + +I +P V +YT LI G +++A IF + + +
Sbjct: 333 CKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITV 392
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T N+M+ + GLF+EA+ L M +++ IPD ++ T++ A + +
Sbjct: 393 WTYNVMINGLCKKGLFDEALALLSRMEDNA------------CIPDAVSYETIIYALSEK 440
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRM 318
+ M+ GL K+ + M
Sbjct: 441 GETVKTNKLLCAMIVRGLSKRLKKKVNM 468
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 16/173 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + L + G I +++D MRS+ K DI+ YN++L
Sbjct: 285 PDVVTYNILIDGLCKLGKISTSLELVDEMRSIGK---------------TVDIITYNSLL 329
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+A + + A +++++K QG +P+ TY +++ + G+ Y F+++ + Y
Sbjct: 330 HALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYH 389
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
Y V++N L ++G DEA++ + ME + A Y + L G+
Sbjct: 390 ITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSYETIIYALSEKGE 442
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 103/248 (41%), Gaps = 16/248 (6%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP+ + + ++ Q A + G K +Y ++M + G+ +
Sbjct: 77 EPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCKMGETRAAMQ 136
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
RK + + + Y ++++L + +A +M +GI + + L LC
Sbjct: 137 MLRKTWVN--ADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCK 194
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
K ++A+ + + K KP VV+Y ++ + A IFN M + PN+
Sbjct: 195 DRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWC 254
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEK 291
NI++ + +EAM LF+EM H + + PD+ T+N ++D C K
Sbjct: 255 YNIIINGLCKKKRVDEAMNLFKEM-----HWKK-------INPDVVTYNILIDGLCKLGK 302
Query: 292 RWDDLELV 299
LELV
Sbjct: 303 ISTSLELV 310
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 86/217 (39%), Gaps = 23/217 (10%)
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+Q S P L + ++ +L + A+S +E GI S L C C G
Sbjct: 2 LQISPTPPILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGI 61
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMKNFCSPNLVTCNIM 236
+ KI K+ +P +++T LI+ CL+ + + + + + + V+ I+
Sbjct: 62 TFLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAIL 121
Query: 237 VKAYLEHGLFEEAMKLFQ---------------------EMAEDSNHINREYDKKGLVIP 275
+ + G AM++ + + D+ + E KG + P
Sbjct: 122 MNGLCKMGETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKG-IFP 180
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
++YTF+ ++DA +++ + M+ G+ N
Sbjct: 181 NVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNV 217
>gi|226530981|ref|NP_001141613.1| uncharacterized protein LOC100273731 [Zea mays]
gi|194705268|gb|ACF86718.1| unknown [Zea mays]
gi|414870824|tpg|DAA49381.1| TPA: hypothetical protein ZEAMMB73_722490 [Zea mays]
Length = 504
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 110/241 (45%), Gaps = 14/241 (5%)
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVS 147
+P + ++ +L +Y+L+ K + + Y P+ L Y V++ + GK D+
Sbjct: 246 RPFRNAFNAILYTLLTIEQYSLIEWVHEKMILEGYSPDVLTYNVVLRAKYMLGKLDQFHQ 305
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
+++M + G+ Y L L K AL ++ + V +P V+ +T LI
Sbjct: 306 LLDEMGKNGLTPDLHTYNLLLHVLGKGDKPLAALNLLNYMSDVGCRPNVLHFTNLIDGLG 365
Query: 208 DSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
+GN++ Y F++ MK C P++V +M+ +Y+ G FEEA + F +M
Sbjct: 366 RAGNLEACRYFFDEMMKKGCDPDVVCYTVMIASYVAAGEFEEAQRFFDDMLMRGQ----- 420
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+P++YT+N+M+ A +D + K M HG N + ++ AG
Sbjct: 421 -------LPNVYTYNSMIQGLCAVGEFDKAFTMLKDMDSHGCTPNFSVYSSLVRRLRNAG 473
Query: 327 K 327
K
Sbjct: 474 K 474
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/221 (19%), Positives = 91/221 (41%), Gaps = 16/221 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y + G + + ++D M K G L PD+ YN +L
Sbjct: 282 PDVLTYNVVLRAKYMLGKLDQFHQLLDEMG-------KNG--------LTPDLHTYNLLL 326
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + + A +L + G +P+ + +++ + G FF ++ +K
Sbjct: 327 HVLGKGDKPLAALNLLNYMSDVGCRPNVLHFTNLIDGLGRAGNLEACRYFFDEMMKKGCD 386
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y V++ + G+ +EA +DM RG + + Y + + LC+ G+ ++A
Sbjct: 387 PDVVCYTVMIASYVAAGEFEEAQRFFDDMLMRGQLPNVYTYNSMIQGLCAVGEFDKAFTM 446
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
+ + P Y+ L++ ++G A + M +
Sbjct: 447 LKDMDSHGCTPNFSVYSSLVRRLRNAGKDTQANNVIKYMTD 487
>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
Length = 524
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/329 (22%), Positives = 139/329 (42%), Gaps = 36/329 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR---SLPKKKFKTGTL--------------E 47
P+ V Y ++ G ++ +V+ MR + K+ TL +
Sbjct: 145 PNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVK 204
Query: 48 RWDPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
+D L P V+YNA++ + + A + + Q+G + TY L+M +
Sbjct: 205 VFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHAL 264
Query: 103 LACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
+ + Y ++QK+ + P+ Y +L+N +EG +A+ E+M ++G+ +A
Sbjct: 265 FMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATA 324
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L G+ +E + K +P VV Y LI + G+++ A I +
Sbjct: 325 VTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAE 384
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
M K P+ +T N +++ + G +EA L EM K+G + PD+ ++
Sbjct: 385 MEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMT-----------KRG-IQPDLVSY 432
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLH 309
NT++ + + D V M+ G +
Sbjct: 433 NTLISGYSMKGDIKDALRVRDEMMDKGFN 461
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 115/241 (47%), Gaps = 16/241 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
PD+ YN ++N + + A V +++ Q+G + +A TY ++ V G+
Sbjct: 285 FSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETD 344
Query: 113 EFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F V+K P+ + Y L+N+ G + A + +ME++ I Y L R
Sbjct: 345 RLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGF 404
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPN 229
C G+ +EA +D++ K +P +VSY LI G+I++A + ++M K F +P
Sbjct: 405 CLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGF-NPT 463
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
L+T N +++ K+ Q +D+ ++ +E KG + PD T+ ++++
Sbjct: 464 LMTYNALIQGLC---------KIRQ--GDDAENLMKEMVAKG-ITPDDSTYISLIEGLTT 511
Query: 290 E 290
E
Sbjct: 512 E 512
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 91/181 (50%), Gaps = 4/181 (2%)
Query: 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK--SYIPNALAYKVLVNTLWRE 139
+L +Q +P+A TY V+ A G+ E R++++ P+ Y L++ +
Sbjct: 137 ELLRQMPRPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKI 196
Query: 140 GKTDEAVSAVEDMERRGIVG-SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
G+ ++AV ++M +G V SA +Y L C GK + AL + + + V +
Sbjct: 197 GRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVAT 256
Query: 199 YTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y L+ A +A + +M KN SP++ T NI++ Y + G ++A+++F+EM+
Sbjct: 257 YNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMS 316
Query: 258 E 258
+
Sbjct: 317 Q 317
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 114/265 (43%), Gaps = 22/265 (8%)
Query: 93 TTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM 152
TT+ +++ + A GK E R++ + PNA+ Y ++ G+ A+ + +M
Sbjct: 117 TTFNIMLRHLCATGKPVRALELLRQMPR---PNAVTYNTVIAGFCARGRVQAALEVMREM 173
Query: 153 -ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK-ICKVANKPLVVSYTGLIQACLDSG 210
ER GI Y L C G+ E+A+ D+ + K P V Y LI D G
Sbjct: 174 RERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVG 233
Query: 211 NIQNA-AYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
+ A Y + ++ + + T N+++ H LF +A A D+ + E K
Sbjct: 234 KLDVALQYREDMVQRGIAMTVATYNLLM-----HALFMDAR------ASDAYAVLEEMQK 282
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
G PD++T+N +++ E V++ M G+ A + +I SR G+V+
Sbjct: 283 NGFS-PDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQ 341
Query: 330 ----LLEITWEHLARADRITPPALI 350
L + + R D + ALI
Sbjct: 342 ETDRLFNVAVKKGIRPDVVMYNALI 366
>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
Length = 716
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 135/290 (46%), Gaps = 15/290 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
LEPDIV+YN ++ + + A +LK QG KP +Y ++ V+ G+
Sbjct: 111 LEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAE 170
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F +++ + +P A AY ++ G+ ++A +E + RG + S + + CL
Sbjct: 171 ELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCL 230
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNL 230
K +EAL + ++ K +P +Y +I G ++ A I ++M++ PNL
Sbjct: 231 GKKRKVDEAL-SLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNL 289
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T NIMV + EEA K+F+ ++ + PD T+ +++D +
Sbjct: 290 LTVNIMVDRLCKARKLEEAYKIFESASQRGCN------------PDCVTYCSLIDGLGKK 337
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
+ D+ ++++ML G + N + +I + G+ E ++ L R
Sbjct: 338 GQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIR 387
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 120/277 (43%), Gaps = 22/277 (7%)
Query: 41 FKTGTLERWDPRLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSA 92
FK G +E+ E PD+ Y+ +++ + Q + +KQQG A
Sbjct: 405 FKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDA 464
Query: 93 TTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVED 151
Y V++ GK + YE ++++ + P Y +V+ L + + DEA E+
Sbjct: 465 RAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEE 524
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
+ +GI + LY L G+ +EA + ++++ K P V ++ L+ A + +
Sbjct: 525 AKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEE 584
Query: 212 IQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270
I A F MK C PN T +I++ + +A +Q+M K+
Sbjct: 585 INEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDM-----------QKQ 633
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
GLV P++ T+ TM+ A D +++R +G
Sbjct: 634 GLV-PNVVTYTTMISGLAKVGNITDAYSLFERFKANG 669
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/344 (19%), Positives = 143/344 (41%), Gaps = 30/344 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P++ Y I L G ++E + ++D M L P+++ N ++
Sbjct: 252 PNSSTYNIIIDMLCLGGRVEEAYRILDEMEH---------------ASLFPNLLTVNIMV 296
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + ++ E A+ + + Q+G P TY +++ + G+ + Y F K + +
Sbjct: 297 DRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHN 356
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + Y L+ + G+ ++ +++ RRG L C+ AG+ E+ M
Sbjct: 357 ANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMI 416
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ I P V SY+ LI +G + + IF+ MK + + N +V + +
Sbjct: 417 FEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCK 476
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +A ++ +EM E V P + T+ ++D A R D+ ++++
Sbjct: 477 SGKVHKAYEILEEMKEKC------------VQPTVATYGAIVDGLAKIDRLDEAYMLFEE 524
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
G+ N + +I + G+++ + E + + +TP
Sbjct: 525 AKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKG-LTP 567
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 143/327 (43%), Gaps = 34/327 (10%)
Query: 5 PDTVAYRSIAVTL---GQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
PD V+Y S+ L G+ G +ELF +++ RS+P YN
Sbjct: 148 PDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCA------------------YAYN 189
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
++ ++E A+ +L++L+++G PS ++ ++ + K + F ++K
Sbjct: 190 TMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKD 249
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
PN+ Y ++++ L G+ +EA +++ME + + + LC A K EEA
Sbjct: 250 AEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAY 309
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAY 240
+ + P V+Y LI G + A +F +M + + N V +++ +
Sbjct: 310 KIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNF 369
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
HG E+ K+F+E+ ++G PD+ NT +D + +++
Sbjct: 370 FIHGRKEDGHKVFKELI-----------RRG-CKPDLTLLNTYMDCVFKAGEVEKGRMIF 417
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGK 327
+ + +G + + + +I ++AG+
Sbjct: 418 EDIRSYGFLPDVRSYSILIHGLTKAGQ 444
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 134/303 (44%), Gaps = 33/303 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ LG+ G + E + + + M D + VVY +++
Sbjct: 322 PDCVTYCSLIDGLGKKGQVDEAYRLFEKM---------------LDAGHNANPVVYTSLI 366
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG---KYNLVYEFFRKVQKS 121
+ E V ++L ++G KP T M+ + G K +++E R
Sbjct: 367 RNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSY--G 424
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
++P+ +Y +L++ L + G+ E + M+++G A Y + C +GK +A
Sbjct: 425 FLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAY 484
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAY 240
++++ + +P V +Y ++ + A +F + K+ N+V + ++ +
Sbjct: 485 EILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGF 544
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ G +EA + +EM KKGL P++YT+N++LDA + ++ + +
Sbjct: 545 GKVGRIDEAYLILEEMM-----------KKGLT-PNVYTWNSLLDALVKAEEINEALVCF 592
Query: 301 KRM 303
+ M
Sbjct: 593 QSM 595
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 15/266 (5%)
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIP 124
A VR ++ + A + +++ +P+ + Y +++ + + E R++Q+ Y
Sbjct: 19 ALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEV 78
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ LV L REG+ +A++ V++++ + LY C AG + A
Sbjct: 79 GVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFF 138
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEH 243
++ KP VSYT +I +G + A +F QM+ S P N M+ Y
Sbjct: 139 HELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSA 198
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G FE+A KL + + E IP + +FN++L C +KR D L +
Sbjct: 199 GRFEDAYKLLERLRERG------------CIPSVVSFNSIL-TCLGKKRKVDEALSLFEV 245
Query: 304 LHHGLHFNAKRHLRMILDASRAGKVE 329
+ N+ + +I G+VE
Sbjct: 246 MKKDAEPNSSTYNIIIDMLCLGGRVE 271
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 90/184 (48%), Gaps = 5/184 (2%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+E ++V+Y+++++ + + + A+ +L+++ ++G P+ T+ +++ ++ + N
Sbjct: 530 IELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEAL 589
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F+ +++ P N Y +L+N L R K ++A +DM+++G+V + Y + L
Sbjct: 590 VCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGL 649
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY---IFNQMKNFCSP 228
G +A ++ P S+ LI+ + + N AY ++ + CS
Sbjct: 650 AKVGNITDAYSLFERFKANGGIPDAASFNALIEG-MSNANRAMEAYQTTVYQLSSSSCSW 708
Query: 229 NLVT 232
N +
Sbjct: 709 NFLV 712
>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
Length = 538
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 121/288 (42%), Gaps = 53/288 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y ++ L +AG I E V+ RSL L D++ ++
Sbjct: 156 PNPITYGTLIQHLSRAGEIDEALRVMIEQRSL---------------ELPTDVITCTTIV 200
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF--------- 115
+ + + A +++++Q G +P+ TY ++ G+ + V FF
Sbjct: 201 GGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGG 260
Query: 116 -----------------------RKV-----QKSYIPNALAYKVLVNTLWREGKTDEAVS 147
RK Q +P+ + Y +L+NT R G+ D ++
Sbjct: 261 SLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLE 320
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
+EDM R G+ Y L LC K ++A ++ + + P VV+Y ++
Sbjct: 321 LLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLC 380
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
SG + ++ M K+ CSP++VT +I++ + G+ + A+KLF+
Sbjct: 381 KSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFE 428
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/338 (19%), Positives = 137/338 (40%), Gaps = 65/338 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y I L +A + + + V++ M + + P++ Y +L
Sbjct: 86 PTLFIYNGIITGLCRASRVMDAYKVLEKM---------------VEESIVPNVFTYTILL 130
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG------------------ 106
N R + + A V Q++K+ G KP+ TYG +++ + G
Sbjct: 131 NGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELP 190
Query: 107 -----------------KYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSA 148
+ + +F ++++ + PN + Y LV+ + G+ D +
Sbjct: 191 TDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRF 250
Query: 149 VEDME-RRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
E+ + R+G AA Y LC AG + A ++++ + P VV+Y+ LI
Sbjct: 251 FEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFA 310
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
+G + + M +N P++VT + ++ + F++A +L + M +
Sbjct: 311 RAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSP---- 366
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
P++ T+N+++D + D++ VY+ ML
Sbjct: 367 --------PNVVTYNSVMDGLCKSGKMDEVHRVYEMML 396
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 112/258 (43%), Gaps = 16/258 (6%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P+ V Y ++ Q G + + + +K K G+LE Y
Sbjct: 222 MGVRPNEVTYSNLVHGFRQHGELDRVIRFFEE-----EKARKGGSLE---------AAAY 267
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
L+A + + A +++L+Q G P TY +++ G+++ E +++
Sbjct: 268 PGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRR 327
Query: 121 SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ + P+ + Y L+N L +E K +A +E ME G + Y + LC +GK +E
Sbjct: 328 NGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDE 387
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVK 238
+ + K P VV+Y+ ++ +G + +A +F +K+ P+ ++++
Sbjct: 388 VHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVIT 447
Query: 239 AYLEHGLFEEAMKLFQEM 256
+ G EEA ++ M
Sbjct: 448 SLCRAGKLEEACGMYHGM 465
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 1/189 (0%)
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALA 128
RR ++ + L +G TTY LV++ + G N E R++ Y P
Sbjct: 31 RRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVRELSGVYTPTLFI 90
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
Y ++ L R + +A +E M IV + Y L LC + K + A ++
Sbjct: 91 YNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMK 150
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NLVTCNIMVKAYLEHGLFE 247
+ KP ++Y LIQ +G I A + + ++ P +++TC +V + +
Sbjct: 151 RNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLD 210
Query: 248 EAMKLFQEM 256
+A+K +EM
Sbjct: 211 DALKFMEEM 219
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 85/191 (44%), Gaps = 9/191 (4%)
Query: 42 KTGTLERWDPRLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSAT 93
K G L+R +E PD+V Y+ ++N R Q++ + +L+ +++ G KP
Sbjct: 276 KAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVV 335
Query: 94 TYGLVMEVMLACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDM 152
TY ++ V+ K+ + ++ + PN + Y +++ L + GK DE E M
Sbjct: 336 TYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMM 395
Query: 153 ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI 212
+ Y + L AG + A+ + I P +Y+ +I + +G +
Sbjct: 396 LKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKL 455
Query: 213 QNAAYIFNQMK 223
+ A +++ M+
Sbjct: 456 EEACGMYHGME 466
>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic [Vitis vinifera]
Length = 772
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/313 (22%), Positives = 140/313 (44%), Gaps = 29/313 (9%)
Query: 19 QAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFW 78
+ G I+E+ ID M + + F+ PD +N+++N R + A
Sbjct: 293 KEGRIEEVLSFIDEMSN---EGFR------------PDRFTFNSLVNGLCRIGHVKHALE 337
Query: 79 VLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLW 137
+L + Q+G P TY ++ + G+ E + + + + PN + Y L++TL
Sbjct: 338 ILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLC 397
Query: 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV 197
+E + +EA + +GI+ + L + LC A+ +++ P
Sbjct: 398 KENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEF 457
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+Y LI + G ++ A + +M++ CS N+VT N ++ + ++ EEA ++F EM
Sbjct: 458 TYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEM 517
Query: 257 AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316
+ I+R ++ T+NT++D +R ++ + +ML GL + +
Sbjct: 518 --ELQGISR----------NVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYN 565
Query: 317 RMILDASRAGKVE 329
++ RAG ++
Sbjct: 566 SLLTYFCRAGDIK 578
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 126/281 (44%), Gaps = 18/281 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PD+ +N ++ A R Q A +++++ G P T+ +M+ + G N
Sbjct: 207 IKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGAL 266
Query: 113 EFFRKVQKSYIPNA-LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++ + P++ + VLV+ +EG+ +E +S +++M G + L L
Sbjct: 267 RIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGL 326
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPN 229
C G + AL +D + + P + +Y LI G ++ A I NQM ++F SPN
Sbjct: 327 CRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDF-SPN 385
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CA 288
VT N ++ + EEA +L R KG ++PD+ TFN+++ C
Sbjct: 386 TVTYNTLISTLCKENQVEEATEL-----------ARVLTSKG-ILPDVCTFNSLIQGLCL 433
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+EL ++ M G H + + +I G++E
Sbjct: 434 TNNHRLAMEL-FEEMKTKGCHPDEFTYNMLIDSLCSRGRLE 473
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 134/305 (43%), Gaps = 29/305 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+TV Y ++ TL + ++E ++ R L K G L PD+ +N+++
Sbjct: 384 PNTVTYNTLISTLCKENQVEEATEL---ARVLTSK----GIL--------PDVCTFNSLI 428
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
A + +++K +G P TY ++++ + + G+ ++++ S
Sbjct: 429 QGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCS 488
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + Y L++ + + +EA ++ME +GI + Y L LC + EEA
Sbjct: 489 RNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQL 548
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
MD++ KP +Y L+ +G+I+ AA I M N C P+ VT ++ +
Sbjct: 549 MDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSK 608
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G E A +L R KG+V+ T+N ++ A EKR + +++
Sbjct: 609 AGRVELASRLL-----------RTVQLKGMVLAP-QTYNPVIKALFREKRTSEAVRLFRE 656
Query: 303 MLHHG 307
M+ G
Sbjct: 657 MMEKG 661
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 117/286 (40%), Gaps = 23/286 (8%)
Query: 51 PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
P P V+Y VL + + VLQ++K G + T+ +++E + K+ L
Sbjct: 99 PNFVPSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIE---SYAKFEL 155
Query: 111 VYEFFRKV-----QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
E V + +A Y L+N L K M RGI +
Sbjct: 156 FDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFN 215
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KN 224
L + LC A + A++ M+++ P ++T L+Q ++ GN+ A I QM
Sbjct: 216 ILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAA 275
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
C + VT N++V Y + G EE + EM+ + PD +TFN+++
Sbjct: 276 GCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFR------------PDRFTFNSLV 323
Query: 285 DA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ C LE++ ML G + + +I + G+VE
Sbjct: 324 NGLCRIGHVKHALEIL-DVMLQEGFDPDIFTYNSLIFGLCKLGEVE 368
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD YN++L R + A ++Q + G +P + TYG ++ + G+ L
Sbjct: 557 LKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELAS 616
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
R VQ K + Y ++ L+RE +T EAV +M +G A Y + R L
Sbjct: 617 RLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGL 676
Query: 172 CSAG 175
CS G
Sbjct: 677 CSGG 680
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 86/190 (45%), Gaps = 17/190 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y S+ +AG IK+ D++ +M S G EPD V Y ++
Sbjct: 559 PDKFTYNSLLTYFCRAGDIKKAADIVQTMTS-------NGC--------EPDSVTYGTLI 603
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + E A +L+ ++ +G + TY V++ + + + FR++ +K
Sbjct: 604 LGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDP 663
Query: 124 PNALAYKVLVNTLWREG-KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+A+ YKV+ L G EAV + +M +G + + + LA LC+ + +
Sbjct: 664 PDAVTYKVVFRGLCSGGGPIGEAVDFLVEMTDKGFLPDFSSFLMLAEGLCALSMEDTLIK 723
Query: 183 QMDKICKVAN 192
++++ K AN
Sbjct: 724 LVNRVMKQAN 733
>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 757
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 109/258 (42%), Gaps = 14/258 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P++ YN ++ V + E +++++++G P+ TY +++ K
Sbjct: 203 VSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAM 262
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
R + + N ++Y ++N L +G+ E VE+M +G+V Y L
Sbjct: 263 ALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGF 322
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C G + L+ + ++ P VV+YT LI +GN+ A IF+QM+ PN
Sbjct: 323 CKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNE 382
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T ++ + + GL EA K+ EM P + T+N ++
Sbjct: 383 RTYTTLIDGFCQKGLMNEAYKVLSEMIVSG------------FSPSVVTYNALVHGYCFL 430
Query: 291 KRWDDLELVYKRMLHHGL 308
R + + + M+ GL
Sbjct: 431 GRVQEAVGILRGMVERGL 448
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 73/344 (21%), Positives = 142/344 (41%), Gaps = 48/344 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ + +AG++ ++ D MR L P+ Y ++
Sbjct: 345 PNVVTYTTLINCMCKAGNLSRAVEIFDQMRV---------------RGLRPNERTYTTLI 389
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ ++ A+ VL ++ G PS TY ++ G+ R V++
Sbjct: 390 DGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLP 449
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++Y ++ RE + +A E+M +G++ Y L + LC K EA
Sbjct: 450 PDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDL 509
Query: 184 MDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAY 240
++ + P V+YT LI A C+D G + A + ++M + F P+ VT ++++
Sbjct: 510 FREMMRRGLPPDEVTYTSLINAYCVD-GELSKALRLHDEMVQRGFL-PDNVTYSVLINGL 567
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK--------- 291
+ + A +L ++ + + +PD T+NT+++ C+ +
Sbjct: 568 NKKARTKVAKRLLLKLFYEES------------VPDDVTYNTLIENCSNNEFKSVEGLVK 615
Query: 292 ------RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++ + V+K ML NA + MI SR G V
Sbjct: 616 GFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVH 659
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 109/265 (41%), Gaps = 24/265 (9%)
Query: 119 QKSYIPNALAYKVLVNTLWREGKT-----DEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ + P L+Y +++ L R + D+A DM R G+ + Y + R + S
Sbjct: 160 RHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVS 219
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVT 232
G E+ L M K+ K P VV+Y LI A ++ A + M + NL++
Sbjct: 220 QGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLIS 279
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ G E +L +EM KGLV PD T+NT+++ E
Sbjct: 280 YNSVINGLCGKGRMSEVGELVEEM-----------RGKGLV-PDEVTYNTLVNGFCKEGN 327
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEITWEHLARADRITPPA 348
++ M+ GL N + +I +AG VE+ + R + T
Sbjct: 328 LHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTT 387
Query: 349 LIKERFCNR-LENKDYGSAISCLVS 372
LI + FC + L N+ Y +VS
Sbjct: 388 LI-DGFCQKGLMNEAYKVLSEMIVS 411
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 112/269 (41%), Gaps = 21/269 (7%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK-----YNLVYE 113
V++ V+ + R A +L + G P+ +Y V++ +L Y+
Sbjct: 134 VFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAER 193
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
FR + ++ + PN Y V++ + +G ++ + + ME+ GI + Y L C
Sbjct: 194 VFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASC 253
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLV 231
K +EA+ + + ++SY +I G + + +M+ P+ V
Sbjct: 254 KKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEV 313
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAE 290
T N +V + + G + + L EM KGL P++ T+ T+++ C A
Sbjct: 314 TYNTLVNGFCKEGNLHQGLVLLSEMV-----------GKGLS-PNVVTYTTLINCMCKAG 361
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
+E ++ +M GL N + + +I
Sbjct: 362 NLSRAVE-IFDQMRVRGLRPNERTYTTLI 389
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 103/234 (44%), Gaps = 20/234 (8%)
Query: 44 GTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
G +ER P PD+V Y+ V+ R ++ AF + +++ ++G P TY +++ +
Sbjct: 442 GMVERGLP---PDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLC 498
Query: 104 ACGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
K ++ FR++ + +P + + Y L+N +G+ +A+ ++M +RG +
Sbjct: 499 LQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNV 558
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS------------- 209
Y L L + + A + K+ + P V+Y LI+ C ++
Sbjct: 559 TYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFC 618
Query: 210 --GNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
G + A +F M + PN N+M+ + G +A L+ E+ S
Sbjct: 619 MKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSS 672
>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Glycine max]
Length = 756
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/306 (23%), Positives = 134/306 (43%), Gaps = 31/306 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+TV Y ++ TL + H+ ++ L + G L PD+ +N+++
Sbjct: 370 PNTVTYNTLIGTLCKENHV-------EAATELARVLTSKGVL--------PDVCTFNSLI 414
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
E A + +++K++G P TY +++E + + + ++++ S
Sbjct: 415 QGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCA 474
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + Y L++ L + + +A + ME G+ S+ Y L LC + + EEA
Sbjct: 475 RNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQL 534
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
MD++ KP +YT +++ G+I+ AA I M N C P++VT ++ +
Sbjct: 535 MDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCK 594
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVI-PDIYTFNTMLDACAAEKRWDDLELVYK 301
G + A KL R KG+V+ P Y N ++ A KR + +++
Sbjct: 595 AGRVDVASKLL-----------RSVQMKGMVLTPQAY--NPVIQALCKRKRTKEAMRLFR 641
Query: 302 RMLHHG 307
M+ G
Sbjct: 642 EMMEKG 647
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/252 (20%), Positives = 112/252 (44%), Gaps = 14/252 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD + ++ + EGA + + + + G + ++ + +++ + G+
Sbjct: 230 LRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEAL 289
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F + ++ + P+ + + LVN L R G + + ++ M +G Y L LC
Sbjct: 290 RFIYE-EEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLC 348
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLV 231
G+ +EA+ + + +P V+Y LI +++ A + + + P++
Sbjct: 349 KLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVC 408
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N +++ E AM+LF+EM E KG PD +T++ ++++ +E+
Sbjct: 409 TFNSLIQGLCLTSNREIAMELFEEMKE-----------KG-CDPDEFTYSILIESLCSER 456
Query: 292 RWDDLELVYKRM 303
R + ++ K M
Sbjct: 457 RLKEALMLLKEM 468
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/256 (19%), Positives = 111/256 (43%), Gaps = 14/256 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD V +NA++N R + ++ + ++G + TY ++ + G+ + E
Sbjct: 300 PDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEI 359
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
V + PN + Y L+ TL +E + A + +G++ + L + LC
Sbjct: 360 LHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCL 419
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVT 232
E A+ +++ + P +Y+ LI++ ++ A + +M+ + C+ N+V
Sbjct: 420 TSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVV 479
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ ++ +A +F +M + ++R T+NT+++ KR
Sbjct: 480 YNTLIDGLCKNNRVGDAEDIFDQM--EMLGVSRSS----------VTYNTLINGLCKSKR 527
Query: 293 WDDLELVYKRMLHHGL 308
++ + +M+ GL
Sbjct: 528 VEEAAQLMDQMIMEGL 543
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 75/161 (46%), Gaps = 2/161 (1%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
V YN ++N + K+ E A ++ Q+ +G KP TY +++ G + +
Sbjct: 513 VTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQN 572
Query: 118 VQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
+ + P+ + Y L+ L + G+ D A + ++ +G+V + Y + + LC +
Sbjct: 573 MTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKR 632
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAA 216
+EA+ ++ + + P V++Y + + C G IQ A
Sbjct: 633 TKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAV 673
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 18/182 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y ++ Q G IK D++ +M TL EPDIV Y ++
Sbjct: 545 PDKFTYTTMLKYFCQQGDIKRAADIVQNM-----------TLNGC----EPDIVTYGTLI 589
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + + A +L+ ++ +G + Y V++ + + FR++ +K
Sbjct: 590 GGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDP 649
Query: 124 PNALAYKVLVNTLWREG-KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ + YK++ L G EAV +M +GI+ + LA LCS E+ L+
Sbjct: 650 PDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKGILPEFPSFGFLAEGLCSLSM-EDTLI 708
Query: 183 QM 184
Q+
Sbjct: 709 QL 710
>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 447
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 125/274 (45%), Gaps = 24/274 (8%)
Query: 46 LERWDPRL-EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L++ D RL +PD+V+Y+ +++A + + A+ + ++ +G TY ++
Sbjct: 186 LKKIDGRLTKPDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYNTLIYGFCI 245
Query: 105 CGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAV-------SAVEDMERRG 156
GK V K+ P+ Y +LV+ L +EGK EA +++M RG
Sbjct: 246 VGKLKEAIGLLNVMVLKTINPDVYTYTILVDALCKEGKVKEAKRRISYVWDLIDEMRDRG 305
Query: 157 IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
Y L LC G + A+ +K+ +P + ++T L+ G +++A
Sbjct: 306 QPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLDGLWKGGRLKDAQ 365
Query: 217 YIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI 274
+F + K + N+ T N+M+ + + GL EEA+ + +M ++ I
Sbjct: 366 EVFQDLLTKGY-HLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNG------------CI 412
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
P+ +TF T++ A + D E + ++M+ GL
Sbjct: 413 PNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 446
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 124/293 (42%), Gaps = 24/293 (8%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
L+R P P V N ++ + Q + A +L QG + + YG ++ +
Sbjct: 120 LKRGYP---PSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVGYGTLINGVCKI 176
Query: 106 GKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G + +K+ P+ + Y +++ L + EA +M +GI Y
Sbjct: 177 GDTRAAIKLLKKIDGRLTKPDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTY 236
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA----AYI-- 218
L C GK +EA+ ++ + P V +YT L+ A G ++ A +Y+
Sbjct: 237 NTLIYGFCIVGKLKEAIGLLNVMVLKTINPDVYTYTILVDALCKEGKVKEAKRRISYVWD 296
Query: 219 -FNQMKNFCSP-NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
++M++ P +++T + ++ ++G + A+ LF +M + + P+
Sbjct: 297 LIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQG------------IRPN 344
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++TF +LD R D + V++ +L G H N + MI + G +E
Sbjct: 345 MFTFTILLDGLWKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLE 397
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 91/225 (40%), Gaps = 23/225 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V Y ++ G +KE +++ M KT + PD+ Y +++
Sbjct: 232 DVVTYNTLIYGFCIVGKLKEAIGLLNVMV------LKT---------INPDVYTYTILVD 276
Query: 66 ACVRRKQWEGA------FW-VLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
A + + + A W ++ +++ +GQ TY +++ + G + F K+
Sbjct: 277 ALCKEGKVKEAKRRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKM 336
Query: 119 QKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+ I PN + +L++ LW+ G+ +A +D+ +G + Y + C G
Sbjct: 337 KDQGIRPNMFTFTILLDGLWKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLL 396
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
EEAL + K+ P ++ +I A A + QM
Sbjct: 397 EEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQM 441
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 78/196 (39%), Gaps = 13/196 (6%)
Query: 90 PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAV 149
P + +++ Y+ V R K P+ +L+N G+ S +
Sbjct: 57 PPIIQFNKILDSFAKMKHYSTVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVL 116
Query: 150 EDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS 209
+ +RG S L + LC G+ ++AL DK+ + V Y LI
Sbjct: 117 AKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVGYGTLINGVCKI 176
Query: 210 GNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD 268
G+ + A + ++ P++V + ++ A ++ L EA LF EM
Sbjct: 177 GDTRAAIKLLKKIDGRLTKPDVVMYSTIIDALCKYQLVSEAYGLFSEMTV---------- 226
Query: 269 KKGLVIPDIYTFNTML 284
KG + D+ T+NT++
Sbjct: 227 -KG-ISADVVTYNTLI 240
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/197 (18%), Positives = 79/197 (40%), Gaps = 58/197 (29%)
Query: 5 PDTVAYRSIAVTLGQAGHIKE-------LFDVIDSMRSLPKKKFKTGTLERWDPRLEPDI 57
PD Y + L + G +KE ++D+ID MR +R P D+
Sbjct: 266 PDVYTYTILVDALCKEGKVKEAKRRISYVWDLIDEMR------------DRGQP---ADV 310
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
+ Y+++++ + + A + ++K QG +P+ T+ ++++ + G+ E F+
Sbjct: 311 ITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLDGLWKGGRLKDAQEVFQD 370
Query: 118 V-QKSY-----------------------------------IPNALAYKVLVNTLWREGK 141
+ K Y IPNA ++ ++ L+++ +
Sbjct: 371 LLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDE 430
Query: 142 TDEAVSAVEDMERRGIV 158
D+A + M RG++
Sbjct: 431 NDKAEKLLRQMIARGLL 447
>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
Length = 538
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 121/288 (42%), Gaps = 53/288 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y ++ L +AG I E V+ RSL L D++ ++
Sbjct: 156 PNPITYGTLIQHLSRAGEIDEALRVMIEQRSL---------------ELPTDVITCTTIV 200
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF--------- 115
+ + + A +++++Q G +P+ TY ++ G+ + V FF
Sbjct: 201 GGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGG 260
Query: 116 -----------------------RKV-----QKSYIPNALAYKVLVNTLWREGKTDEAVS 147
RK Q +P+ + Y +L+NT R G+ D ++
Sbjct: 261 SLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLE 320
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
+EDM R G+ Y L LC K ++A ++ + + P VV+Y ++
Sbjct: 321 LLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLC 380
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
SG + ++ M K+ CSP++VT +I++ + G+ + A+KLF+
Sbjct: 381 KSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFE 428
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/338 (19%), Positives = 137/338 (40%), Gaps = 65/338 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y I L +A + + + V++ M + + P++ Y +L
Sbjct: 86 PTVFIYNGIITGLCRASRVMDAYKVLEKM---------------VEESIVPNVFTYTILL 130
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG------------------ 106
N R + + A V Q++K+ G KP+ TYG +++ + G
Sbjct: 131 NGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELP 190
Query: 107 -----------------KYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSA 148
+ + +F ++++ + PN + Y LV+ + G+ D +
Sbjct: 191 TDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRF 250
Query: 149 VEDME-RRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
E+ + R+G AA Y LC AG + A ++++ + P VV+Y+ LI
Sbjct: 251 FEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFA 310
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
+G + + M +N P++VT + ++ + F++A +L + M +
Sbjct: 311 RAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSP---- 366
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
P++ T+N+++D + D++ VY+ ML
Sbjct: 367 --------PNVVTYNSVMDGLCKSGKMDEVHRVYEMML 396
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 112/258 (43%), Gaps = 16/258 (6%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P+ V Y ++ Q G + + + +K K G+LE Y
Sbjct: 222 MGVRPNEVTYSNLVHGFRQHGELDRVIRFFEE-----EKARKGGSLE---------AAAY 267
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
L+A + + A +++L+Q G P TY +++ G+++ E +++
Sbjct: 268 PGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRR 327
Query: 121 SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ + P+ + Y L+N L +E K +A +E ME G + Y + LC +GK +E
Sbjct: 328 NGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDE 387
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVK 238
+ + K P VV+Y+ ++ +G + +A +F +K+ P+ ++++
Sbjct: 388 VHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVIT 447
Query: 239 AYLEHGLFEEAMKLFQEM 256
+ G EEA ++ M
Sbjct: 448 SLCRAGKLEEACGMYHGM 465
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 1/189 (0%)
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALA 128
RR ++ + L +G TTY LV++ + G N E R++ Y P
Sbjct: 31 RRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVRELSGVYTPTVFI 90
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
Y ++ L R + +A +E M IV + Y L LC + K + A ++
Sbjct: 91 YNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMK 150
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NLVTCNIMVKAYLEHGLFE 247
+ KP ++Y LIQ +G I A + + ++ P +++TC +V + +
Sbjct: 151 RNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLD 210
Query: 248 EAMKLFQEM 256
+A+K +EM
Sbjct: 211 DALKFMEEM 219
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 85/191 (44%), Gaps = 9/191 (4%)
Query: 42 KTGTLERWDPRLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSAT 93
K G L+R +E PD+V Y+ ++N R Q++ + +L+ +++ G KP
Sbjct: 276 KAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVV 335
Query: 94 TYGLVMEVMLACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDM 152
TY ++ V+ K+ + ++ + PN + Y +++ L + GK DE E M
Sbjct: 336 TYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMM 395
Query: 153 ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI 212
+ Y + L AG + A+ + I P +Y+ +I + +G +
Sbjct: 396 LKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKL 455
Query: 213 QNAAYIFNQMK 223
+ A +++ M+
Sbjct: 456 EEACGMYHGME 466
>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 142/327 (43%), Gaps = 30/327 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P + ++ + G + ++D M+S L+ DIV+YN +
Sbjct: 201 PTVHLFTTLIRGFAKEGRVDSALSLLDEMKS---------------SSLDADIVLYNVCI 245
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-I 123
++ + + + A+ +++ G KP TY ++ V+ + + E F ++K+ +
Sbjct: 246 DSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRV 305
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P AY ++ GK DEA S +E +G + S Y + CL GK +EAL
Sbjct: 306 PCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRV 365
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+++ K A P + +Y LI +G + A + + M K PN+ T NIMV +
Sbjct: 366 FEEMKKDA-APNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCK 424
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+EA +F++M D K + PD TF +++D R DD +Y++
Sbjct: 425 SQKLDEACAIFEQM-----------DYK-VCTPDEITFCSLIDGLGKVGRVDDAYKIYEK 472
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
ML N+ + +I + G+ E
Sbjct: 473 MLDSDCRTNSIVYTSLIKNFFNHGRKE 499
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 121/286 (42%), Gaps = 36/286 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ L +A + E ++ + + R P YN ++
Sbjct: 271 PDEVTYTSMIGVLCKANRLDEAVEMFEHLEK---------------NRRVPCTYAYNTMI 315
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+++ A+ +L++ + +G PS Y ++ + GK + F +++K P
Sbjct: 316 MGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDAAP 375
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA---L 181
N Y +L++ L R GK D A + M++ G+ + + LC + K +EA
Sbjct: 376 NLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIF 435
Query: 182 MQMD-KICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
QMD K+C P +++ LI G + +A I+ +M + C N + ++K
Sbjct: 436 EQMDYKVC----TPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKN 491
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
+ HG E+ K++++M + PD+ NT +D
Sbjct: 492 FFNHGRKEDGHKIYKDMVNQN------------CSPDLQLLNTYMD 525
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 120/289 (41%), Gaps = 29/289 (10%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R PD Y+ +++ ++ + + +K+QG Y +V++ CGK N
Sbjct: 547 RFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKA 606
Query: 112 YEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
Y+ +++ K + P + Y +++ L + + DEA E+ + + I + +Y L
Sbjct: 607 YQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDG 666
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPN 229
G+ +EA + ++++ + P V ++ L+ A + + I A F MK C+PN
Sbjct: 667 FGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPN 726
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEM-------------------------AEDSNHIN 264
VT I++ + F +A +QEM AE +
Sbjct: 727 QVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFD 786
Query: 265 REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK 313
R G +PD +N M++ + R D +++ GLH + K
Sbjct: 787 RFKANGG--VPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLHIHNK 833
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 72/321 (22%), Positives = 134/321 (41%), Gaps = 55/321 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +Y + L +AG E +++ SM+ + G + D YN V+
Sbjct: 550 PDARSYSILIHGLIKAGFANETYELFYSMK-------EQGCV--------LDTRAYNIVI 594
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + + A+ +L+++K +G +P+ TYG V++ + + + Y F + + I
Sbjct: 595 DGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIE 654
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL-- 181
N + Y L++ + G+ DEA +E++ ++G+ + + L L A + EAL
Sbjct: 655 LNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVC 714
Query: 182 -----------------MQMDKICKV----------------ANKPLVVSYTGLIQACLD 208
+ ++ +CKV KP +SYT +I
Sbjct: 715 FQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAK 774
Query: 209 SGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
+GNI A +F++ K N P+ N M++ +A LF+E HI +
Sbjct: 775 AGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLHI---H 831
Query: 268 DKKGLVIPDIYTFNTMLDACA 288
+K +V+ D N L+ A
Sbjct: 832 NKTCVVLLDTLHKNDCLEQAA 852
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/301 (18%), Positives = 127/301 (42%), Gaps = 29/301 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + + S+ LG+ G + + + + + M D + +VY +++
Sbjct: 445 PDEITFCSLIDGLGKVGRVDDAYKIYEKM---------------LDSDCRTNSIVYTSLI 489
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ E + + + Q P M+ M G+ F +++ + ++
Sbjct: 490 KNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFV 549
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+A +Y +L++ L + G +E M+ +G V Y + C GK +A
Sbjct: 550 PDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQL 609
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
++++ +P VV+Y +I + A +F + K+ N+V + ++ + +
Sbjct: 610 LEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGK 669
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +EA + +E+ + KGL P++YT+N++LDA + ++ + ++
Sbjct: 670 VGRIDEAYLILEELMQ-----------KGLT-PNVYTWNSLLDALVKAEEINEALVCFQS 717
Query: 303 M 303
M
Sbjct: 718 M 718
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/364 (18%), Positives = 148/364 (40%), Gaps = 43/364 (11%)
Query: 19 QAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFW 78
+A ++E FDV+ +MR KFK P Y ++ A +
Sbjct: 145 KANKLREGFDVVQNMR-----KFK----------FRPAFSAYTTLIGAFSAVNHSDMMLT 189
Query: 79 VLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLW 137
+ QQ+++ G +P+ + ++ G+ + +++ S + + + Y V +++
Sbjct: 190 LFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFG 249
Query: 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV 197
+ GK D A ++E G+ Y + LC A + +EA+ + + K P
Sbjct: 250 KVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTY 309
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+Y +I +G A + + + S P+++ N ++ + G +EA+++F+EM
Sbjct: 310 AYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEM 369
Query: 257 AEDSNHINREYD----------------------KKGLVIPDIYTFNTMLDACAAEKRWD 294
+D+ Y+ +K + P++ T N M+D ++ D
Sbjct: 370 KKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLD 429
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL----ARADRITPPALI 350
+ ++++M + + +I + G+V+ +E + R + I +LI
Sbjct: 430 EACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLI 489
Query: 351 KERF 354
K F
Sbjct: 490 KNFF 493
>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
Length = 973
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPK-----------------KKFKTG 44
P+ V Y ++ + G ++E +++ MR LP ++ +T
Sbjct: 449 PNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTY 508
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+E + RL P+ Y A ++ + + E A ++ G P+ Y ++E
Sbjct: 509 LMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCK 568
Query: 105 CGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + FR + + + + Y VL++ L R GK EA +++ +G++ +A
Sbjct: 569 EGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFT 628
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L C G ++A ++++C P +V+Y LI +G I+ A +F+ ++
Sbjct: 629 YNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIE 688
Query: 224 N-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+PN VT MV Y + A +L +EM V PD + +N
Sbjct: 689 GRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG------------VPPDAFIYNV 736
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA-SRAGKVE----LLEITWEH 337
+L+ C E++++ +++ ML G F + +++ ++GK++ LLE E
Sbjct: 737 ILNFCCKEEKFEKALDLFQEMLEKG--FASTVSFNTLIEGYCKSGKLQEANHLLEEMIEK 794
Query: 338 LARADRITPPALI 350
+ +T +LI
Sbjct: 795 QFIPNHVTYTSLI 807
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/331 (22%), Positives = 145/331 (43%), Gaps = 18/331 (5%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLER--WDPRLEPDIVVYNA 62
PD Y ++ + G++K+ V+ M + + L+R D L PD+ Y+
Sbjct: 222 PDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDI 281
Query: 63 VLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
++N C+ ++ E +L+ + G KP TY +++ + G + ++
Sbjct: 282 LINGFCMEKRSREAKLMLLEMI-DVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVAC 340
Query: 122 YI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
I N + + L+N + + GK ++A+ +++M +G+ + Y L C A
Sbjct: 341 GIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARA 400
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
+D++ K P V++Y+ +I GN+Q I +M N PN V ++ A
Sbjct: 401 FELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTA 460
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ + G EE+ + + M E ++PD++ +N+++ KR ++
Sbjct: 461 HAKEGRVEESRMILERMREQG------------ILPDVFCYNSLIIGFCKAKRMEEARTY 508
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
ML L NA + I S+AG++E+
Sbjct: 509 LMEMLERRLRPNAHTYGAFIDGYSKAGEMEI 539
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/326 (20%), Positives = 140/326 (42%), Gaps = 29/326 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y ++ + G I++ F + D M + +E +++++N +L
Sbjct: 309 PEPITYNALIDGFMRQGDIEQAFRIKDEMVACG---------------IEANLIIWNTLL 353
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + + E A ++Q++ ++G +P + TY L++E +E +++K +
Sbjct: 354 NGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLA 413
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P L Y V++N L R G + + +M G+ +A +Y L G+ EE+ M
Sbjct: 414 PTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMI 473
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMKNFCSPNLVTCNIMVKAYLE 242
++++ + P V Y LI + ++ A Y+ ++ PN T + Y +
Sbjct: 474 LERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSK 533
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G E A + F EM V+P++ + +++ E + V++
Sbjct: 534 AGEMEIADRYFNEMLSCG------------VLPNVGIYTALIEGHCKEGNVTEAFSVFRF 581
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV 328
+L + + + + +I SR GK+
Sbjct: 582 ILSRRVLQDVQTYSVLIHGLSRNGKM 607
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 121/282 (42%), Gaps = 29/282 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHI---KELFDVIDSMRSLP-------------KKKFKTGTLER 48
PD V Y + L +AG I K LFD I+ P K K T +
Sbjct: 659 PDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQL 718
Query: 49 WDPRL----EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ L PD +YN +LN C + +++E A + Q++ ++G S ++ ++E
Sbjct: 719 LEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNTLIEGYCK 777
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK + ++K +IPN + Y L++ + G EA +M+ R ++ +A
Sbjct: 778 SGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKT 837
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-- 221
Y L + G E +++ +P ++Y +I A GN+ A + ++
Sbjct: 838 YTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEIL 897
Query: 222 -----MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
MK+ L TC+++ + + G +EA ++ + M +
Sbjct: 898 VKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVK 939
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 105/237 (44%), Gaps = 17/237 (7%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R+ D+ Y+ +++ R + AF + +L+++G P+A TY ++ G +
Sbjct: 586 RVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKA 645
Query: 112 YEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ ++ K P+ + Y +L++ L + G+ + A + +D+E RG+ + Y +
Sbjct: 646 SQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDG 705
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSP 228
C + A ++++ P Y ++ C + A +F +M K F S
Sbjct: 706 YCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFAST 765
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
V+ N +++ Y + G +EA L +EM E IP+ T+ +++D
Sbjct: 766 --VSFNTLIEGYCKSGKLQEANHLLEEMIEKQ------------FIPNHVTYTSLID 808
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 105/253 (41%), Gaps = 32/253 (12%)
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
A +VL+ + DEA+ M +G+V Y L C + EA + + ++
Sbjct: 243 AKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEM 302
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--PNLVTCNIMVKAYLEHGL 245
V KP ++Y LI + G+I+ A I ++M C NL+ N ++ + G
Sbjct: 303 IDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVA-CGIEANLIIWNTLLNGVCKAGK 361
Query: 246 FEEAMKLFQEMAED------------------SNHINREYD-----KKGLVIPDIYTFNT 282
E+A+++ QEM E ++ R ++ KK + P + T++
Sbjct: 362 MEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSV 421
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARAD 342
+++ + + M+ +GL NA + ++ ++ G+VE + E
Sbjct: 422 IINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILE------ 475
Query: 343 RITPPALIKERFC 355
R+ ++ + FC
Sbjct: 476 RMREQGILPDVFC 488
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 37/210 (17%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAV---EDME-RRGIVGSAALYYDLARCLCSAGKCEE 179
PN++ + +L+++ + G EAV+ ++ E R ++ +L DL + K E
Sbjct: 152 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLK----GNKVEL 207
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKA 239
D +C P V +YT +I A GN+++A + +M
Sbjct: 208 FWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGE--------------- 252
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ L +EA++L + M + KGLV PD+YT++ +++ EKR + +L+
Sbjct: 253 --KARLLDEAIELKRSMVD-----------KGLV-PDLYTYDILINGFCMEKRSREAKLM 298
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
M+ GL + +I R G +E
Sbjct: 299 LLEMIDVGLKPEPITYNALIDGFMRQGDIE 328
>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
Length = 816
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 153/344 (44%), Gaps = 47/344 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y ++ L +AG ++E ++R ++ + + P + YN V+
Sbjct: 245 PDEVSYCTVLDGLCKAGRVEE------AVRLFGDRELPSSSSSSS---SPPSLRGYNIVI 295
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + A + +++ ++ P + +YG++++ + GK N F+K+ S +
Sbjct: 296 LGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVT 355
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ +AY L++ L D+A DM RRG S Y + C G EEA
Sbjct: 356 PSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDL 415
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ K+ + + P VV+Y ++ S ++ A +FN+M+ C+PN + N ++ +
Sbjct: 416 IKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQ 475
Query: 243 H---------GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
G +EA +L + M +D + +PD+ T++T++ + R
Sbjct: 476 QSKIDQACQRGKLDEAFRLLKRMTDDGH------------VPDVVTYSTLISGLCSIARV 523
Query: 294 DD----LELVYKRM----------LHHGLHFNAK-RHLRMILDA 322
DD LE + KR L HGL + + R +LDA
Sbjct: 524 DDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDA 567
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 89/417 (21%), Positives = 157/417 (37%), Gaps = 103/417 (24%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLERWDP 51
+PD+ + +I L +AG + E V+D MRS L + G++ER
Sbjct: 76 FPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQ 135
Query: 52 RLE----PDIVVYNAVLNACVRRKQWEGAFWV---------------------------- 79
LE + YN V+ A + + + A +
Sbjct: 136 LLEIMPVANSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGR 195
Query: 80 ----LQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIPNALAYKVLVN 134
LQ ++ ++P T +++E + G+ + E R + + P+ ++Y +++
Sbjct: 196 IDEALQVYRENRREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLD 255
Query: 135 TLWREGKT-----------------------------------------DEAVSAVEDME 153
L + G+ DEAV E M
Sbjct: 256 GLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMN 315
Query: 154 RRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQ 213
R + + Y L L AGK +A K+ P V+YT LI + +
Sbjct: 316 ERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFD 375
Query: 214 NAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGL 272
+A +F M + C P+ VT N+M+ A + G+ EEA L ++M ED +
Sbjct: 376 DARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGH----------- 424
Query: 273 VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+PD+ T+NT++D R ++ L++ M G N + H +IL + K++
Sbjct: 425 -VPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKID 480
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 136/316 (43%), Gaps = 40/316 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y + + G ++E D+I KK + G + PD+V YN V+
Sbjct: 391 PSPVTYNVMIDASCKRGMLEEACDLI-------KKMIEDGHV--------PDVVTYNTVM 435
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM-------EVMLAC--GKYNLVYEFF 115
+ + + E A + ++++ G P+ ++ ++ ++ AC GK + +
Sbjct: 436 DGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLL 495
Query: 116 RKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+++ ++P+ + Y L++ L + D+A +EDM +R + L LC A
Sbjct: 496 KRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKA 555
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTC 233
G+ +EA +D + P VV+Y L+ +G + A + + M +PN+VT
Sbjct: 556 GRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTY 615
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM-LDACAAEKR 292
+V + EA +F +M K P+++T+ + L C+A +
Sbjct: 616 TALVSGLCKANRLPEACGVFAQM------------KSSGCAPNLFTYTALILGFCSAGQV 663
Query: 293 WDDLELVYKRMLHHGL 308
L+L + M+ G+
Sbjct: 664 DGGLKL-FGEMVCAGI 678
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/336 (20%), Positives = 142/336 (42%), Gaps = 40/336 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD+ +Y + L +AG + + R+L +K +G + P V Y +++
Sbjct: 321 PDSWSYGILIDGLAKAGKLND-------ARNLFQKLLHSG--------VTPSTVAYTSLI 365
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ ++ A + + ++G PS TY ++++ G + +K ++ ++
Sbjct: 366 HGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHV 425
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA--------- 174
P+ + Y +++ L + + +EA+ +MER G + + + LC
Sbjct: 426 PDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQR 485
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTC 233
GK +EA + ++ + P VV+Y+ LI + +A ++ M K C P +VT
Sbjct: 486 GKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQ 545
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKR 292
N ++ + G +EA ++ M PD+ T+NT++ C A +
Sbjct: 546 NTLIHGLCKAGRIKEAREVLDAMVSSGQS------------PDVVTYNTLVHGHCRAGQT 593
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
EL+ M+ GL N + ++ +A ++
Sbjct: 594 ERARELLSD-MVARGLAPNVVTYTALVSGLCKANRL 628
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 6/208 (2%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V Y+ +++ + + A +L+ + ++ KP+ T ++ + G+ E
Sbjct: 505 PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREV 564
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
V P+ + Y LV+ R G+T+ A + DM RG+ + Y L LC
Sbjct: 565 LDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCK 624
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC---SPNL 230
A + EA ++ P + +YT LI +G + +F +M C SP+
Sbjct: 625 ANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEM--VCAGISPDH 682
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
V + + G A+++ +E E
Sbjct: 683 VVYGTLAAELCKSGRSARALEILREGRE 710
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 76/190 (40%), Gaps = 18/190 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L +A + E V M+S +G P++ Y A++
Sbjct: 610 PNVVTYTALVSGLCKANRLPEACGVFAQMKS-------SGC--------APNLFTYTALI 654
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
Q +G + ++ G P YG + + G+ E R+ ++S
Sbjct: 655 LGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRS 714
Query: 125 NALA---YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
A Y+ V+ L GK + A+ V DM R G + + L LC +G+ EA
Sbjct: 715 EAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEAR 774
Query: 182 MQMDKICKVA 191
+++I +A
Sbjct: 775 AVLEEIMDLA 784
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 3/174 (1%)
Query: 85 QQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDE 144
QQG P+ + V++ G+ + F +++ + P Y VL+++L + +T+
Sbjct: 3 QQGIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPDVYNVLIDSLSKRQETEA 62
Query: 145 AVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204
V+ M RG + + + LC AGK +EA + MD++ P + + L
Sbjct: 63 VKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAH 122
Query: 205 ACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
G+++ A F ++ N NI+V A + ++A++L + M+E
Sbjct: 123 ELCLRGSMERA---FQLLEIMPVANSSAYNIVVVALCKAARVDDALELARTMSE 173
>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic [Vitis vinifera]
Length = 869
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/361 (23%), Positives = 143/361 (39%), Gaps = 77/361 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + T G+ ++++ +++ M S G+ PDI YN +L
Sbjct: 285 PDITTYSYLVETFGKLNRLEKVSELLKEMES-------GGSF--------PDITSYNVLL 329
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
A + + A V +Q++ G P+A TY +++ + G+Y+ V + F +++ S
Sbjct: 330 EAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTE 389
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDM------------------------------- 152
PNA Y +L+N G E V+ DM
Sbjct: 390 PNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKI 449
Query: 153 ----ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+G+V S+ Y + A EEAL+ + + +V +KP V +Y LIQ
Sbjct: 450 LLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAK 509
Query: 209 SGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM----------- 256
G + + I +M ++ + N T N +++A+ + G FEEA+K + EM
Sbjct: 510 GGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQT 569
Query: 257 -------------AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
E+S E G ++P + + ML A RWDD + M
Sbjct: 570 LEAVLSVYCFAGLVEESEEQFGEIKALG-ILPSVMCYCMMLAVYAKADRWDDAHQLLDEM 628
Query: 304 L 304
Sbjct: 629 F 629
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/328 (21%), Positives = 139/328 (42%), Gaps = 36/328 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y + LG+ G +++ ++ D M S + P + + A++
Sbjct: 144 PNEHIYTIMIGVLGREGLLEKCQEIFDEMPS---------------HGVAPSVFSFTALI 188
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE----FFRKVQK 120
NA R Q++ + +L ++K++ PS TY V+ +C + L +E F +++
Sbjct: 189 NAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVIN---SCARGGLDWEELLGLFAQMRH 245
Query: 121 SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
I + + Y L++ R G DEA M GI+ Y L + E+
Sbjct: 246 EGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEK 305
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVK 238
+ ++ + P + SY L++A SG+I+ A +F QM+ C PN T +I++
Sbjct: 306 VSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLN 365
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
Y HG +++ LF EM + P+ T+N +++ + ++
Sbjct: 366 LYGRHGRYDDVRDLFLEMKVSNTE------------PNAATYNILINVFGEGGYFKEVVT 413
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAG 326
++ M+ + N + + +I + G
Sbjct: 414 LFHDMVEENVEPNMETYEGLIFACGKGG 441
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 130/311 (41%), Gaps = 50/311 (16%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV----------- 101
++ DIV YN +L+AC RR + A V + + + G P TTY ++E
Sbjct: 248 IQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVS 307
Query: 102 -----MLACG------KYNLVYE-------------FFRKVQKSY-IPNALAYKVLVNTL 136
M + G YN++ E FR++Q + +PNA Y +L+N
Sbjct: 308 ELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLY 367
Query: 137 WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV 196
R G+ D+ +M+ +AA Y L G +E + + + +P +
Sbjct: 368 GRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNM 427
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
+Y GLI AC G ++A I M + P+ +++AY + L+EEA+ F
Sbjct: 428 ETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNT 487
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
M E + P + T+N+++ A + + E + +M G+ N +
Sbjct: 488 MNEVGSK------------PTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARN-RDT 534
Query: 316 LRMILDASRAG 326
+++A R G
Sbjct: 535 FNGVIEAFRQG 545
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 16/223 (7%)
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY--IPNALAYKVLVNTLWREGKTDEAV 146
K S + LV + G + F+ +Q+ PN Y +++ L REG ++
Sbjct: 107 KLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQ 166
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
++M G+ S + L G+ + +L +D++ K P +++Y +I +C
Sbjct: 167 EIFDEMPSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVINSC 226
Query: 207 LDSG-NIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
G + + +F QM++ ++VT N ++ A GL +EA +F+ M E
Sbjct: 227 ARGGLDWEELLGLFAQMRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNE------ 280
Query: 265 REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
G ++PDI T++ +++ R + + + K M G
Sbjct: 281 ------GGILPDITTYSYLVETFGKLNRLEKVSELLKEMESGG 317
>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
Length = 814
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/306 (21%), Positives = 135/306 (44%), Gaps = 37/306 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLERWD-- 50
PD +AY ++ L +AGH +E V+D+M + L K GTLER +
Sbjct: 258 PDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEEL 317
Query: 51 ------PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
P+ V+Y ++++ + + + A + ++ + G +P T+ ++++ +
Sbjct: 318 FRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCK 377
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + + F ++ + PN + Y ++ L + G+ A ++ M G +
Sbjct: 378 SGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVT 437
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L C G+ +EA +D++ K ++ P + Y+ L++ D G+++N +
Sbjct: 438 YICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQS 497
Query: 224 NFCSPNL---VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
+ NL + C+I+V + G +EA ++FQ M + PD T+
Sbjct: 498 KAAAENLDPGLCCSIIV-GLCKTGRLDEACRIFQRMVSEGCK------------PDATTY 544
Query: 281 NTMLDA 286
N +++
Sbjct: 545 NILING 550
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 101/216 (46%), Gaps = 11/216 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQ--WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
+PD YN ++N R ++ E AF +L L+ G P A TY + + G+ +
Sbjct: 538 KPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRA 597
Query: 112 YEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ + + + + +AY L L +G+ D AVS ++M R+G AA Y +
Sbjct: 598 VKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIING 657
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNL 230
L K E+A D++ KP V +YT L+QA +GN+ A F++ + +
Sbjct: 658 LIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEA---FHRFEGMLARGE 714
Query: 231 VTCNIMVKAYLEHGL-----FEEAMKLFQEMAEDSN 261
+ ++M+ L HG + A+KLF++M N
Sbjct: 715 LVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGN 750
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 119/279 (42%), Gaps = 15/279 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P+ +N ++ + R ++ + A + +K++ KP T+ ++++ + G +
Sbjct: 150 IAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAF 209
Query: 113 EFFRKVQK-SYIPNALA-YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
E F ++ ++P A + +V TL + + EA ME+ G A Y +
Sbjct: 210 EVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDG 269
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
L AG +EAL +D + A P V+Y L+ + +G ++ A +F M + PN
Sbjct: 270 LAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPN 329
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
V ++ + + G +EA LF EM E PD+ T M+D
Sbjct: 330 SVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYR------------PDVITHTVMIDGLCK 377
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
++ ++ M+ G N + +I S+ G+V
Sbjct: 378 SGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRV 416
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 124/293 (42%), Gaps = 28/293 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + + L +AG ++ F+V M ++ + PD ++ A++
Sbjct: 187 PDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMG--------------FVPPDRALHTAMV 232
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
++ K+ + A V Q+++ G P A Y +++ + G + + K+ +
Sbjct: 233 RTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACV 292
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y +LVN+L + G + A M G ++ +Y L +G+ +EA
Sbjct: 293 PTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSL 352
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLE 242
D++ + +P V+++T +I SGN + AA F + M+ C PN+VT +++ +
Sbjct: 353 FDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSK 412
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
G A ++ + M PD T+ +LD R D+
Sbjct: 413 IGRVANAFRIMKGMIAHG------------CFPDSVTYICLLDGFCKLGRLDE 453
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 90/226 (39%), Gaps = 17/226 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + + L + G + +++ S W+ D+V Y A+
Sbjct: 576 PDAVTYTPLCIGLCKIGEVDRAVKMLEEASS-----------RGWNA----DVVAYTALC 620
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ Q + A + Q++ +QG P A Y ++ ++ K +FF + + K
Sbjct: 621 TGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQK 680
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRG-IVGSAALYYDLARCLCSAGKCEEALM 182
P Y LV L G DEA E M RG +VGS +Y L C A K + AL
Sbjct: 681 PTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALK 740
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP 228
+ + N P V+ L + SG + A + +M SP
Sbjct: 741 LFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSP 786
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 123/275 (44%), Gaps = 21/275 (7%)
Query: 84 KQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKT 142
+Q G + TY +M +++A Y+ Y ++ K+ I PN ++ +L+ + R +
Sbjct: 111 EQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRA 170
Query: 143 DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS-YTG 201
D+AV+ E M+R+ + L CLC AG E+A ++ + P + +T
Sbjct: 171 DDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTA 230
Query: 202 LIQACLDSGNIQNAAYIFNQMKNFCS--PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
+++ L + ++ A +F QM+ C P+ + N M+ + G +EA+K+ M
Sbjct: 231 MVRTLLKAKRVKEAREVFGQMEK-CGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAK 289
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
+ +P T+ ++++ + E +++ M G N+ + +I
Sbjct: 290 A------------CVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLI 337
Query: 320 LDASRAGKVE----LLEITWEHLARADRITPPALI 350
+++G+++ L + E R D IT +I
Sbjct: 338 HGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMI 372
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 86/202 (42%), Gaps = 17/202 (8%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D VAY ++ L G + D SL ++ + G PD Y ++N
Sbjct: 612 DVVAYTALCTGLCYQGQV-------DRAVSLFQEMVRQGG--------APDAAAYCCIIN 656
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV--QKSYI 123
++ K+ E A ++ +GQKP+ TY +++ + G + + F + + +
Sbjct: 657 GLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELV 716
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y L++ + K D A+ EDM RG V +A L L +GK E+A
Sbjct: 717 GSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQEL 776
Query: 184 MDKICKVANKPLVVSYTGLIQA 205
+ ++ + P ++T ++
Sbjct: 777 LQEMAAGGSPPHAATFTAILDG 798
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/343 (19%), Positives = 122/343 (35%), Gaps = 67/343 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y +I L + G + F ++ M G PD V Y +L
Sbjct: 398 PNVVTYTTIIQGLSKIGRVANAFRIMKGM-------IAHGCF--------PDSVTYICLL 442
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY----------------------------- 95
+ + + + A +L +L + P+ Y
Sbjct: 443 DGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAE 502
Query: 96 ----GLVMEVMLACGKYNLVYE----FFRKVQKSYIPNALAYKVLVNTLW--REGKTDEA 145
GL +++ K + E F R V + P+A Y +L+N L RE + + A
Sbjct: 503 NLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERA 562
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+ + D+E G + A Y L LC G+ + A+ +++ VV+YT L
Sbjct: 563 FALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTG 622
Query: 206 CLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
G + A +F +M + +P+ ++ ++ E+A K F EM
Sbjct: 623 LCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQK-- 680
Query: 265 REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
P + T+ ++ A D+ ++ ML G
Sbjct: 681 ----------PTVATYTALVQALCHAGNVDEAFHRFEGMLARG 713
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/385 (18%), Positives = 130/385 (33%), Gaps = 72/385 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKK------------FKTGTLERWDPR 52
P++V Y S+ ++G +KE + D M + K+G E+
Sbjct: 328 PNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKS 387
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E P++V Y ++ + + AF +++ + G P + TY +++
Sbjct: 388 FEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCK 447
Query: 105 CGKYNLVYEFFRKVQK-SYIPNALAYKVLV----------NTL----------------- 136
G+ + + ++ K S PN Y LV NTL
Sbjct: 448 LGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPG 507
Query: 137 ---------WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA--GKCEEALMQMD 185
+ G+ DEA + M G A Y L LC + + E A +
Sbjct: 508 LCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLH 567
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEHG 244
+ V P V+YT L G + A + + + + ++V + G
Sbjct: 568 DLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQG 627
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
+ A+ LFQEM PD + +++ K+ +D + M+
Sbjct: 628 QVDRAVSLFQEMVRQGG------------APDAAAYCCIINGLIKGKKLEDACKFFDEMI 675
Query: 305 HHGLHFNAKRHLRMILDASRAGKVE 329
G + ++ AG V+
Sbjct: 676 GKGQKPTVATYTALVQALCHAGNVD 700
>gi|449523013|ref|XP_004168519.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like, partial [Cucumis sativus]
Length = 594
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 118/266 (44%), Gaps = 16/266 (6%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D + PD+V +N VL+A Q+ A + +K +P TT +V+ ++ +Y
Sbjct: 33 DNGVGPDLVTHNIVLSAYKSGAQYSKALSYFELMKGTNIRPDTTTLNIVIHCLIKVKQYG 92
Query: 110 LVYEFF---RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
E F R+ + P+ + + +++ G+ ++ + M GI + Y
Sbjct: 93 QAIEIFSSMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNA 152
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NF 225
L S G +EA D++ + P VVSYT LI S A +F+ MK N
Sbjct: 153 LISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNK 212
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
C PNLV+ N ++ AY +G +A+ + +EM +D H P++ + T+L
Sbjct: 213 CKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIH------------PNVVSICTLLA 260
Query: 286 ACAAEKRWDDLELVYKRMLHHGLHFN 311
AC + +++ V G+H N
Sbjct: 261 ACGRFGQKVNIDSVLSAAELRGIHLN 286
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 72/352 (20%), Positives = 146/352 (41%), Gaps = 31/352 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT + L + + ++ SMR +R + R PD+V + +++
Sbjct: 73 PDTTTLNIVIHCLIKVKQYGQAIEIFSSMRE-----------KRSECR--PDVVTFTSII 119
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YI 123
+ R Q E V + +G KP+ +Y ++ + G + F ++++S +
Sbjct: 120 HLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFC 179
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++Y L++T R + A + M+R + Y L S G +A+
Sbjct: 180 PDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDI 239
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ ++ + P VVS L+ AC G N + + + N + CN + +Y+
Sbjct: 240 LREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMN 299
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +E+A+ L++ M + PD TF ++ C ++++ +K
Sbjct: 300 IGEYEKAINLYRSMENKTTK------------PDSVTFTILISGCCRMSKYEEALCFFKE 347
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA----DRITPPALI 350
ML + +++ + MI S+ G++ E + L + D +T A+I
Sbjct: 348 MLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMI 399
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 130/312 (41%), Gaps = 33/312 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V+Y ++ G KE F V D M+ ++G PD+V Y +++
Sbjct: 145 PNIVSYNALISAYASHGMDKEAFSVFDEMK-------RSG--------FCPDVVSYTSLI 189
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ R +Q A V +K+ KP+ +Y +M+ + G + R++++ I
Sbjct: 190 STFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIH 249
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN ++ L+ R G+ S + E RGI + + G+ E+A+
Sbjct: 250 PNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINL 309
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNI---MVKAY 240
+ KP V++T LI C + A F +M + P ++ I M+ AY
Sbjct: 310 YRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIP--LSSEIYSSMICAY 367
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ G +A LF + K PD+ T+ M++A +A + W+ + +Y
Sbjct: 368 SKQGQLVKAESLFNSL------------KGSGCCPDLVTYTAMINAYSASEMWEKVCALY 415
Query: 301 KRMLHHGLHFNA 312
+ M + + ++
Sbjct: 416 QEMEANNIQLDS 427
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/357 (21%), Positives = 147/357 (41%), Gaps = 50/357 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y S+ T G++ +V D M+ + +P++V YNA++
Sbjct: 180 PDVVSYTSLISTFGRSQQPARAREVFDMMKR---------------NKCKPNLVSYNALM 224
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY----NLVYEFFRKVQK 120
+A A +L++++Q G P+ + + ++ ACG++ N+ +
Sbjct: 225 DAYGSNGYLPQAVDILREMEQDGIHPNVVS---ICTLLAACGRFGQKVNIDSVLSAAELR 281
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
N +A + + G+ ++A++ ME + + + L C K EEA
Sbjct: 282 GIHLNTIACNSAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEA 341
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKA 239
L ++ + Y+ +I A G + A +FN +K + C P+LVT M+ A
Sbjct: 342 LCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINA 401
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHIN--------REYDKKG-----LVIPDIY-------- 278
Y ++E+ L+QEM ++ ++ + ++K L++ +I
Sbjct: 402 YSASEMWEKVCALYQEMEANNIQLDSIACSALMKAFNKGNQASNVLILAEIMKEKGIPFN 461
Query: 279 --TFNTMLDACAAEKRWDDLELVYKRM--LHHGLHFNAKRHLRMILDASRAGKVELL 331
F ML AC+ + W + M H + HL L ++GK E++
Sbjct: 462 DANFFEMLSACSILRDWRKATDLINLMEPSFHLVSLGTINHLLQFL--GKSGKTEIM 516
>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
Length = 817
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 114/256 (44%), Gaps = 14/256 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V YN V++ + A + +++ Q+G P TY V+ + + F
Sbjct: 220 PNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAF 279
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
R+ V K +PN Y L+ G+ EAV ++M R I+ L LC
Sbjct: 280 LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 339
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
GK +EA D + P V SY ++ G + + +F+ M + +P+ T
Sbjct: 340 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT 399
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N+++KAY G+ ++AM +F EM R++ K PD+ T+ T++ A +
Sbjct: 400 FNVLIKAYANCGMLDKAMIIFNEM--------RDHGVK----PDVVTYRTVIAALCRIGK 447
Query: 293 WDDLELVYKRMLHHGL 308
DD + +M+ G+
Sbjct: 448 MDDAMEKFNQMIDQGV 463
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/366 (20%), Positives = 148/366 (40%), Gaps = 44/366 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL---------------- 46
PD V YR++ L + G + + + + M + + K+ L
Sbjct: 430 PDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKEL 489
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E + + DIV +++++N + + A + G P A Y ++M+
Sbjct: 490 ISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCL 549
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK F + + I PN + Y LVN + G+ DE +S +M +RGI S L
Sbjct: 550 VGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTIL 609
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + L AG+ A M+ ++ + + +Y +++ + A ++F +++
Sbjct: 610 YSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELR 669
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
N++T N M+ + EEA LF ++ + ++P + T++
Sbjct: 670 AMNVKINIITLNTMIDGMFQTRRVEEAKDLFASIS------------RSRLVPSVVTYSI 717
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAK------RHLRMILDASRAG----KVELLE 332
M+ E ++ E ++ M + G N++ R L + RAG K++
Sbjct: 718 MITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERN 777
Query: 333 ITWEHL 338
+ EHL
Sbjct: 778 FSLEHL 783
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 107/279 (38%), Gaps = 22/279 (7%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSM----------------RSLPKKKFKTGT 45
S PD V + +L + G IKE DV D+M K
Sbjct: 322 SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDM 381
Query: 46 LERWDPRL----EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
+ +D L PD +N ++ A + A + +++ G KP TY V+
Sbjct: 382 TDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAA 441
Query: 102 MLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ GK + E F + + + P+ AY L+ G +A + ++ G+
Sbjct: 442 LCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLD 501
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
+ + LC G+ +A D V P V Y L+ G ++ A +F+
Sbjct: 502 IVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFD 561
Query: 221 QMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
M + PN+V +V Y + G +E + LF+EM +
Sbjct: 562 AMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQ 600
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/343 (19%), Positives = 130/343 (37%), Gaps = 64/343 (18%)
Query: 51 PR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
PR L P Y +++ C R + E A QL + G + + ++E + +
Sbjct: 107 PRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTD 166
Query: 110 LVYEFF--RKVQKSYIPNALAYKVLVNTL------------------------------- 136
+ R + +P+ +Y +L+ +L
Sbjct: 167 EALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYN 226
Query: 137 ------WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
++EG ++A ++M +RGI Y + LC A ++A + ++
Sbjct: 227 TVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNK 286
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEHGLFEEA 249
P +Y LI +G + A +F +M+ P++VT ++++ + ++G +EA
Sbjct: 287 RVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEA 346
Query: 250 MKLFQEMAEDS--------NHINREYDKKGLVI---------------PDIYTFNTMLDA 286
+F MA N + Y KG ++ PD YTFN ++ A
Sbjct: 347 RDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKA 406
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
A D +++ M HG+ + + +I R GK++
Sbjct: 407 YANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMD 449
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/299 (18%), Positives = 119/299 (39%), Gaps = 17/299 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V + ++ + + + + A V + +GQ P +Y +++ G + +
Sbjct: 325 PDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDL 384
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F + I P+ + VL+ G D+A+ +M G+ Y + LC
Sbjct: 385 FDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCR 444
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVT 232
GK ++A+ + +++ P +Y LIQ G++ A + ++ M N ++V
Sbjct: 445 IGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVF 504
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+ ++ + G +A +F H PD +N ++D +
Sbjct: 505 FSSIINNLCKLGRVMDAQNIFDLTVNVGLH------------PDAVVYNMLMDGYCLVGK 552
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARADRITPPALI 350
+ V+ M+ G+ N + ++ + G++ E L + E L R I P ++
Sbjct: 553 MEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRG--IKPSTIL 609
>gi|15222753|ref|NP_175959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75140283|sp|Q7X6A5.1|PPR81_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g55630
gi|30793841|gb|AAP40373.1| unknown protein [Arabidopsis thaliana]
gi|30794021|gb|AAP40457.1| unknown protein [Arabidopsis thaliana]
gi|110739296|dbj|BAF01561.1| hypothetical protein [Arabidopsis thaliana]
gi|332195155|gb|AEE33276.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 477
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 115/257 (44%), Gaps = 18/257 (7%)
Query: 3 SYPDTV-AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
YP T + + T G+AG +++ + ++ + +K YN
Sbjct: 182 GYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHS---------------YN 226
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQK 120
A+L++ + KQ++ WV +Q+ + G P TY +VM GK + +Y + V+
Sbjct: 227 AILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKD 286
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ P+ Y +L++ L K A++ + M G+ + L L AGK E
Sbjct: 287 GFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEAC 346
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKA 239
MD+ KV P VV YT +I + G ++ A +F +M PN+ T N M++
Sbjct: 347 KYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRG 406
Query: 240 YLEHGLFEEAMKLFQEM 256
+ G F+EA L +EM
Sbjct: 407 FCMAGKFKEACALLKEM 423
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 116/244 (47%), Gaps = 18/244 (7%)
Query: 89 KPSATTYGLVMEVMLACGKYNL---VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEA 145
+P +Y ++ +L +Y L VYE + ++ + P+ L Y +++ +R GKTD
Sbjct: 219 RPYKHSYNAILHSLLGVKQYKLIDWVYE--QMLEDGFTPDVLTYNIVMFANFRLGKTDRL 276
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+++M + G Y L L + K AL ++ + +V +P V+ +T LI
Sbjct: 277 YRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDG 336
Query: 206 CLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
+G ++ Y ++ +K C+P++V +M+ Y+ G E+A ++F+EM E
Sbjct: 337 LSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQ--- 393
Query: 265 REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASR 324
+P+++T+N+M+ ++ + + K M G + N + ++ +
Sbjct: 394 ---------LPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNLKN 444
Query: 325 AGKV 328
AGKV
Sbjct: 445 AGKV 448
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 62/129 (48%), Gaps = 1/129 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+EP ++ + +++ R + E + + + + G P Y +++ ++ G+
Sbjct: 323 VEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAE 382
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F+++ +K +PN Y ++ GK EA + +++ME RG + +Y L L
Sbjct: 383 EMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNL 442
Query: 172 CSAGKCEEA 180
+AGK EA
Sbjct: 443 KNAGKVLEA 451
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V Y ++ + + E A + +++ ++GQ P+ TY ++ GK+
Sbjct: 360 PDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACAL 419
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
++++ + PN + Y LVN L GK EA V+DM +G
Sbjct: 420 LKEMESRGCNPNFVVYSTLVNNLKNAGKVLEAHEVVKDMVEKG 462
>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
Length = 1035
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 128/306 (41%), Gaps = 26/306 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV+Y + L +E +++ M + W P++V Y+ V+
Sbjct: 163 PDTVSYNILLKGLCNEKRAEEALELLHMM----------ADDQVWS--CPPNVVSYSTVI 210
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N Q + + + ++ +G P TY V++ + ++ F++ +
Sbjct: 211 NGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVK 270
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y L++ GK E V +E+M G + Y L LC G+C EA
Sbjct: 271 PNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFF 330
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
D + KP V +Y ++ G + + N M N SPN NI AY +
Sbjct: 331 FDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAK 390
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G+ ++AM +F +M + +GL PD ++ ++DA R DD E+ + +
Sbjct: 391 CGIIDKAMDIFNKMRQ-----------QGLS-PDAVSYGALIDALCKLGRVDDAEVKFNQ 438
Query: 303 MLHHGL 308
M++ G+
Sbjct: 439 MINEGV 444
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 115/279 (41%), Gaps = 14/279 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD V Y A+++A + + + A Q+ +G P + ++ + K+ V
Sbjct: 409 LSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVE 468
Query: 113 E-FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E FF + PN + + ++ L +EG+ E V+ +E G+ Y L
Sbjct: 469 ELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGH 528
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C AG +EA ++ + V KP SY L+ +G I +A F +M N +P +
Sbjct: 529 CLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGV 588
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N ++ + F EA +L+ M DIYT+N +L+
Sbjct: 589 VTYNTILHGLFQTKRFSEAKELYLNMINSGTKW------------DIYTYNIILNGLCKS 636
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
D+ +++ + GL N MI + G+ E
Sbjct: 637 NCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKE 675
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 115/265 (43%), Gaps = 17/265 (6%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ V + +I L + G + E ++DS+ + + PD++ YN +
Sbjct: 480 HPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMG---------------VRPDVISYNTL 524
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
++ + A +L+ + G KP + +Y ++ G+ + Y FRK+ + I
Sbjct: 525 IDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGI 584
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P + Y +++ L++ + EA +M G Y + LC + +EA+
Sbjct: 585 TPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIK 644
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+C + ++++ +I A L G ++A +F + N N+VT ++V+ +
Sbjct: 645 MFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLI 704
Query: 242 EHGLFEEAMKLFQEMAEDSNHINRE 266
E G EE LF M ++ N +
Sbjct: 705 EEGSLEEFDSLFSAMEKNGTAPNSQ 729
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/292 (19%), Positives = 118/292 (40%), Gaps = 49/292 (16%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGL---------------- 97
+P+ Y ++LN + + A + + +G KPS TTYG+
Sbjct: 305 KPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHD 364
Query: 98 VMEVMLA-------------------CGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLW 137
++ +M+A CG + + F K+ Q+ P+A++Y L++ L
Sbjct: 365 LLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALC 424
Query: 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV 197
+ G+ D+A M G+ ++ L LC+ K E+ ++ V P +V
Sbjct: 425 KLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIV 484
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+ ++ G + + + ++ P++++ N ++ + G +EA KL + M
Sbjct: 485 FFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGM 544
Query: 257 AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+ PD +++NT+L R D +++ML +G+
Sbjct: 545 VSVG------------LKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGI 584
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/357 (21%), Positives = 133/357 (37%), Gaps = 61/357 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y +I L Q E + L +GT +WD I YN +L
Sbjct: 586 PGVVTYNTILHGLFQTKRFSE-------AKELYLNMINSGT--KWD------IYTYNIIL 630
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N + + A + Q L +G + + T+ +++ +L G+ + F + +
Sbjct: 631 NGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLV 690
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + Y+++V L EG +E S ME+ G ++ + L R L G A
Sbjct: 691 QNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAY 750
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAA-------YIFNQ--------------- 221
+ K+ + N + S T ++ + S Q+ A I N+
Sbjct: 751 LSKLDE-RNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIKKARRIDD 809
Query: 222 ---------MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGL 272
MK +P++VT N ++ + G F EA +L+ M +N
Sbjct: 810 AYSLFREMLMKGL-TPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMN-------- 860
Query: 273 VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
IYT+N +L+ D+ +++ + GL N MI + G+ E
Sbjct: 861 ----IYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKE 913
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 85/213 (39%), Gaps = 17/213 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y +I L Q G E ++ SM + R + +I YN +L
Sbjct: 824 PDVVTYNTILHGLFQTGRFSEAKELYLSM---------------INSRTQMNIYTYNIIL 868
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N + + AF + Q L +G + + T+ +++ +L G+ + F + +
Sbjct: 869 NGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLV 928
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y+++ L EG +E ME+ G + L L R L G A
Sbjct: 929 PDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDISRAGAY 988
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
+ K+ + N L S T + + G Q+ A
Sbjct: 989 LSKLDE-KNFSLEASTTSELISLFSRGEYQHHA 1020
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/332 (20%), Positives = 129/332 (38%), Gaps = 48/332 (14%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+ V YR + L + G ++E + +M K GT P+ + NA++
Sbjct: 692 NVVTYRLVVENLIEEGSLEEFDSLFSAME-------KNGT--------APNSQMLNALVR 736
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-IP 124
+ R A L +L ++ A+T +++ + + +Y + + K Y I
Sbjct: 737 RLLHRGDISRAGAYLSKLDERNFSVEASTTSMLISI-FSSDEYQ---HHAKSLPKKYRIL 792
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N L+ R D+A S +M +G+ Y + L G+ EA
Sbjct: 793 NEANSSALIKKARR---IDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELY 849
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP----NLVTCNIMVKAY 240
+ + + +Y ++ S + A F ++ CS N++T NIM+ A
Sbjct: 850 LSMINSRTQMNIYTYNIILNGLCKSNCVDEA---FKMFQSLCSKGLQLNIITFNIMIGAL 906
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
L+ G E+AM LF + + ++PD+ T+ + + E ++ + ++
Sbjct: 907 LKGGRKEDAMDLFAAIPANG------------LVPDVVTYRLVAENLIEEGSLEEFDGLF 954
Query: 301 KRMLHHGLHFNAK------RHLRMILDASRAG 326
M G +++ R L D SRAG
Sbjct: 955 LTMEKSGTPLDSRLLNALVRRLLQRGDISRAG 986
>gi|255661012|gb|ACU25675.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 376
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 139/297 (46%), Gaps = 17/297 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + ++ PD VVYNA+LN R + + F + + + ++G + S ++ ++M + G
Sbjct: 15 EIVESKVSPDAVVYNAMLNGFFRVGRIKDCFELWEMMGREGSR-SVASFNIMMRGLFDNG 73
Query: 107 KYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K + V ++KS +I +++ Y +LV+ + G ++++ +E ER+G V A Y
Sbjct: 74 KVDEVISILELMKKSGFIEDSITYGILVHGFCKNGYINKSLHVLEIAERKGGVLDAFAYS 133
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+ LC K ++A+ ++ + K KP Y LI + + ++A + +M
Sbjct: 134 AMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGASKFEDAVRVVREMGTT 193
Query: 226 -CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
CSP LVT + ++ + F EA L +EM Z KGL P + T++ ++
Sbjct: 194 NCSPTLVTYSTLINGLCKVERFGEAYDLVKEMLZ-----------KGLN-PSVITYSLLM 241
Query: 285 DA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
C K L+L ++ G + + H +I GK +L + + + R
Sbjct: 242 KGLCLGHKVEMALQLX-NQVTSKGFKPDVQMHNILIHGLCSVGKTQLALLLYLDMNR 297
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 122/292 (41%), Gaps = 29/292 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D++ Y + + G+I + S+ L + K G L D Y+A++N
Sbjct: 93 DSITYGILVHGFCKNGYINK------SLHVLEIAERKGGVL---------DAFAYSAMIN 137
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ + + A VL + + G KP+A Y ++ ++ K+ R++ + P
Sbjct: 138 GLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGASKFEDAVRVVREMGTTNCSP 197
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ Y L+N L + + EA V++M +G+ S Y L + LC K E AL
Sbjct: 198 TLVTYSTLINGLCKVERFGEAYDLVKEMLZKGLNPSVITYSLLMKGLCLGHKVEMALQLX 257
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
+++ KP V + LI G Q A ++ M + C+PNLVT N +++ + +
Sbjct: 258 NQVTSKGFKPDVQMHNILIHGLCSVGKTQLALLLYLDMNRWNCAPNLVTHNTLMEGFYKD 317
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
A+ ++ + + + PDI ++N L + R D
Sbjct: 318 DDIRNALVIWARILRNG------------LQPDIISYNITLKGLCSCNRISD 357
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/237 (19%), Positives = 102/237 (43%), Gaps = 13/237 (5%)
Query: 74 EGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLV 133
+GA V +++ + P A Y ++ G+ +E + + + + ++ +++
Sbjct: 7 DGAERVYKEIVESKVSPDAVVYNAMLNGFFRVGRIKDCFELWEMMGREGSRSVASFNIMM 66
Query: 134 NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANK 193
L+ GK DE +S +E M++ G + + Y L C G ++L ++ +
Sbjct: 67 RGLFDNGKVDEVISILELMKKSGFIEDSITYGILVHGFCKNGYINKSLHVLEIAERKGGV 126
Query: 194 PLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKL 252
+Y+ +I + A + N M K+ C PN N ++ + FE+A+++
Sbjct: 127 LDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGASKFEDAVRV 186
Query: 253 FQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH 309
+EM + P + T++T+++ +R+ + + K ML GL+
Sbjct: 187 VREMGTTNCS------------PTLVTYSTLINGLCKVERFGEAYDLVKEMLZKGLN 231
>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
Length = 613
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 127/282 (45%), Gaps = 22/282 (7%)
Query: 30 IDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK 89
+D S+ K FK G + PD + +NA++N + + A + ++ ++G +
Sbjct: 144 VDFSVSVLGKMFKLG--------IHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHE 195
Query: 90 PSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSA 148
P+ +Y V+ + G ++ + F+K+ Q PN + Y ++++L ++ ++A+
Sbjct: 196 PNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEF 255
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+ +M RGI + Y + C+ G+ EA ++ P V++T L+
Sbjct: 256 LSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCK 315
Query: 209 SGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
G + A +F M + P++ T N ++ Y L EA K+F+ M
Sbjct: 316 EGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMI---------- 365
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH 309
+KG P +++N +++ +R D+ + + M H L+
Sbjct: 366 -RKGCA-PGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALN 405
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 118/258 (45%), Gaps = 14/258 (5%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R+ ++ N ++N R + + VL ++ + G P A T+ ++ + GK
Sbjct: 123 RVTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEA 182
Query: 112 YEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
E F + V++ + PN ++Y ++N L + G T AV + ME+ G + Y +
Sbjct: 183 VELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDS 242
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
LC +A+ + ++ + P V +Y ++ + G + A +F +M PN
Sbjct: 243 LCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPN 302
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
VT I+V + G+ EA +F+ M E KG V PDI T+N ++D
Sbjct: 303 TVTFTILVDGLCKEGMVSEARLVFETMTE-----------KG-VEPDISTYNALMDGYCL 350
Query: 290 EKRWDDLELVYKRMLHHG 307
++ ++ + V++ M+ G
Sbjct: 351 QRLMNEAKKVFEIMIRKG 368
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/321 (22%), Positives = 137/321 (42%), Gaps = 30/321 (9%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD + + ++ L G IKE ++ + M K G EP+++ Y V
Sbjct: 160 HPDAITFNALINGLCNEGKIKEAVELFNEM-------VKRGH--------EPNVISYTTV 204
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSY 122
+N + A V ++++Q G KP+ TY +++ + N EF + V++
Sbjct: 205 INGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGI 264
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN Y +V+ G+ +EA ++M R ++ + + L LC G EA +
Sbjct: 265 PPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARL 324
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ + + +P + +Y L+ + A +F M + C+P + NI++ Y
Sbjct: 325 VFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYC 384
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ +EA L EM Y K + PD T++T++ R + ++K
Sbjct: 385 KSRRMDEAKSLLAEM----------YHKA--LNPDTVTYSTLMQGLCQLGRPKEALNLFK 432
Query: 302 RMLHHGLHFNAKRHLRMILDA 322
M +G H N ++ ++LD
Sbjct: 433 EMCSYGPHPNLVTYV-ILLDG 452
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 126/286 (44%), Gaps = 19/286 (6%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D V N N CV + A ++ + +PS +G + +Y+ V
Sbjct: 62 DGFVSNNSNNVCV-----DDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLC 116
Query: 116 RKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
++ + N + +L+N L R D +VS + M + GI A + L LC+
Sbjct: 117 NQMDLFRVTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNE 176
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTC 233
GK +EA+ +++ K ++P V+SYT +I +GN A +F +M +N C PN+VT
Sbjct: 177 GKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTY 236
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
+ ++ + + L +AM+ EM E + P+++T+N+++ +
Sbjct: 237 STIIDSLCKDRLVNDAMEFLSEMVERG------------IPPNVFTYNSIVHGFCNLGQL 284
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
++ ++K M+ + N ++ + G V + +E +
Sbjct: 285 NEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMT 330
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/337 (21%), Positives = 136/337 (40%), Gaps = 34/337 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL---------------- 46
P+ V Y +I +L + + + + + M R +P F ++
Sbjct: 231 PNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRL 290
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E + P+ V + +++ + A V + + ++G +P +TY +M+
Sbjct: 291 FKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCL 350
Query: 105 CGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
N + F ++K P A +Y +L+N + + DEA S + +M + +
Sbjct: 351 QRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVT 410
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L + LC G+ +EAL ++C P +V+Y L+ G++ A + MK
Sbjct: 411 YSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMK 470
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
PN+V I+++ G E A +LF ++ D PDI T+
Sbjct: 471 EKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTR------------PDIRTYTV 518
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
M+ E D+ ++++M G N+ + MI
Sbjct: 519 MIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMI 555
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 101/214 (47%), Gaps = 6/214 (2%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P YN ++N + ++ + A +L ++ + P TY +M+ + G+
Sbjct: 371 PGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNL 430
Query: 115 FRKVQKSYIP--NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F+++ SY P N + Y +L++ + G DEA+ ++ M+ + + + Y L +
Sbjct: 431 FKEMC-SYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMF 489
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--FCSPNL 230
AGK E A K+ +P + +YT +I+ L G A +F +M++ F PN
Sbjct: 490 IAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFL-PNS 548
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
+ N+M++ +L++ A++L EM +N
Sbjct: 549 CSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVN 582
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 71/150 (47%), Gaps = 16/150 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ V Y + + GH+ E ++ SM+ + +LEP+IV Y +
Sbjct: 440 HPNLVTYVILLDGFCKHGHLDEALKLLKSMK---------------EKKLEPNIVHYTIL 484
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSY 122
+ + E A + +L G +P TY ++++ +L G + Y+ FRK++ +
Sbjct: 485 IEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGF 544
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDM 152
+PN+ +Y V++ + + A+ +++M
Sbjct: 545 LPNSCSYNVMIQGFLQNQDSSTAIRLIDEM 574
>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 121/258 (46%), Gaps = 15/258 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVL-QQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
P I+ + +L+A V+ Q+ GA L +Q++ G P T ++++ + +L +
Sbjct: 92 PCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFS 151
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F K+ K + P+A+ + L+N L + GK +AV +D E G + Y + LC
Sbjct: 152 VFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLC 211
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLV 231
G+ A K+ + +P VV+Y LI + + A IF+ MK SP++
Sbjct: 212 KIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIF 271
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N +++ ++EA L EM + ++P+I+TFN ++DA E
Sbjct: 272 TYNSLIQGLCNFRRWKEASALLNEMTSLN------------IMPNIFTFNVLVDAICKEG 319
Query: 292 RWDDLELVYKRMLHHGLH 309
+ + + V+K M G+
Sbjct: 320 KVSEAQGVFKTMTEMGVE 337
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 118/281 (41%), Gaps = 25/281 (8%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PDI + +++ ++ + AF V ++ + G +P A T+ ++ + GK+
Sbjct: 126 LSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAV 185
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
EFF + S P Y ++N L + G+T A + ME G + Y L L
Sbjct: 186 EFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSL 245
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C EAL + P + +Y LIQ + + A+ + N+M + PN+
Sbjct: 246 CKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNI 305
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAE--------DSNHINREYDKKGLVI-------- 274
T N++V A + G EA +F+ M E + + Y + ++
Sbjct: 306 FTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDA 365
Query: 275 -------PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
PD +++N ++ KR D+ + ++ M+H GL
Sbjct: 366 MITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGL 406
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/327 (20%), Positives = 137/327 (41%), Gaps = 29/327 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y + +L + + E D+ M++ R+ PDI YN+++
Sbjct: 233 PNVVTYNILIDSLCKDKLVNEALDIFSYMKA---------------KRISPDIFTYNSLI 277
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
++W+ A +L ++ P+ T+ ++++ + GK + F+ + + +
Sbjct: 278 QGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVE 337
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L+ + EA + M +G A Y L + C A + +EA
Sbjct: 338 PDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQL 397
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+++ P V+Y LI G ++ A +F M N P+L T ++++ + +
Sbjct: 398 FNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCK 457
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +A +LF+ M S ++ PDI +N ++DA D ++
Sbjct: 458 EGYLGKAFRLFRVM--QSTYLK----------PDIAMYNILIDAMCKFGNLKDARKLFSE 505
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
+ GL N + + +I + + G ++
Sbjct: 506 LFVQGLLPNVQIYTTIINNLCKEGLLD 532
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/338 (22%), Positives = 137/338 (40%), Gaps = 47/338 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y S+ L KE +++ M SL + P+I +N ++
Sbjct: 268 PDIFTYNSLIQGLCNFRRWKEASALLNEMTSL---------------NIMPNIFTFNVLV 312
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE-------FFRK 117
+A + + A V + + + G +P TY +M Y+L E F
Sbjct: 313 DAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMY------GYSLRMEIVEARKLFDAM 366
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+ K P+A +Y +L+ + + DEA +M +G+ Y L LC G+
Sbjct: 367 ITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRL 426
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIM 236
EA + N P + +Y+ L+ G + A +F M++ + P++ NI+
Sbjct: 427 REAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNIL 486
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ A + G ++A KLF E+ +GL +P++ + T+++ E D+
Sbjct: 487 IDAMCKFGNLKDARKLFSELF-----------VQGL-LPNVQIYTTIINNLCKEGLLDEA 534
Query: 297 ELVYKRMLHHGL---HFNAKRHLRMIL---DASRAGKV 328
++ M G F+ +R L D SRA ++
Sbjct: 535 LEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQL 572
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 103/260 (39%), Gaps = 17/260 (6%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M PD V Y S+ I E + D+M + K PD Y
Sbjct: 334 MGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCK---------------PDAFSY 378
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N ++ + K+ + A + ++ QG P Y ++ + G+ + F+ +
Sbjct: 379 NILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHS 438
Query: 121 S-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ +P+ Y +L++ +EG +A M+ + A+Y L +C G ++
Sbjct: 439 NGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKD 498
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVK 238
A ++ P V YT +I G + A F M+ + C P+ + N++++
Sbjct: 499 ARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIR 558
Query: 239 AYLEHGLFEEAMKLFQEMAE 258
+L++ A +L EM +
Sbjct: 559 GFLQYKDESRAAQLIGEMRD 578
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 73/179 (40%), Gaps = 21/179 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPK--------KKF-KTGTLER---- 48
PD V Y ++ L Q G ++E D+ +M S LP F K G L +
Sbjct: 408 PDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRL 467
Query: 49 ----WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L+PDI +YN +++A + + A + +L QG P+ Y ++ +
Sbjct: 468 FRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCK 527
Query: 105 CGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G + E FR ++ P + +Y V++ + A + +M RG V A
Sbjct: 528 EGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGFVAEAG 586
>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
Length = 721
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 121/260 (46%), Gaps = 8/260 (3%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR----SLPKKKFKTGTLERWDPRLEPDIVVY 60
P+ V Y ++ L +AG I++ + M+ +P ++ EP++ Y
Sbjct: 325 PNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASN--EPNVFTY 382
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQ 119
A+++ + Q + A +L+ + +G +P+ Y +++ GK + E F ++
Sbjct: 383 GALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLE 442
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
Y PN Y L++ L+++ + D A+ + M + +Y ++ LC GK +E
Sbjct: 443 CGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDE 502
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVK 238
A M + + P VV+YT +I SG ++ + QM + C+PN VT +++
Sbjct: 503 AYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLIN 562
Query: 239 AYLEHGLFEEAMKLFQEMAE 258
GL +EA KL +EM +
Sbjct: 563 HCCSTGLLDEAHKLLEEMKQ 582
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 138/332 (41%), Gaps = 34/332 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV Y + L +A +E D + MR+ P+++ Y +L
Sbjct: 40 PDTVLYTKMISGLCEASLFEEAMDFLTRMRA---------------SSCLPNVLTYRILL 84
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
C+ +++ +L + +G PS + ++ G Y Y+ +K VQ
Sbjct: 85 CGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQ 144
Query: 124 PNALAYKVLVNTLWRE---GKT--DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
P + Y +L+ + GK D A A +M G+V + + +RCLC GK E
Sbjct: 145 PGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFE 204
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMV 237
+A + ++ P +Y+ +I ++ ++ A +F +MK N +P++ ++
Sbjct: 205 KAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLI 264
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
++ + G E+A F EM D P++ T+ ++ A ++
Sbjct: 265 DSFCKAGFIEQARNWFDEMERDG------------CAPNVVTYTALIHAYLKSRKVSKAN 312
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
VY+ ML G N + +I +AGK+E
Sbjct: 313 EVYEMMLSKGCTPNIVTYTALIDGLCKAGKIE 344
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 132/320 (41%), Gaps = 37/320 (11%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD Y+ V+ + E AF + Q++K+ G P Y +++ G +
Sbjct: 220 PDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNW 279
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F ++++ PN + Y L++ + K +A E M +G + Y L LC
Sbjct: 280 FDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCK 339
Query: 174 AGKCEEALMQMDKICK------------------VANKPLVVSYTGLIQACLDSGNIQNA 215
AGK E+A Q+ KI K +N+P V +Y L+ + ++ A
Sbjct: 340 AGKIEKA-SQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEA 398
Query: 216 AYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI 274
+ M C PN V + ++ + G +EA ++F M E YD
Sbjct: 399 RDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECG------YD------ 446
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----L 330
P++YT+++++D +KR D V +ML + N + MI + GK + L
Sbjct: 447 PNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKL 506
Query: 331 LEITWEHLARADRITPPALI 350
+ + E + +T A+I
Sbjct: 507 MVMMEEKGCNPNVVTYTAMI 526
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 73/342 (21%), Positives = 137/342 (40%), Gaps = 51/342 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLER---W 49
PDT Y + L A +++ F + M+ +L K G +E+ W
Sbjct: 220 PDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNW 279
Query: 50 DPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+E P++V Y A+++A ++ ++ A V + + +G P+ TY +++ +
Sbjct: 280 FDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCK 339
Query: 105 CGKYNLVYEFFRKVQKSYI------------------PNALAYKVLVNTLWREGKTDEAV 146
GK + ++ ++K + PN Y LV+ L + + EA
Sbjct: 340 AGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEAR 399
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
++ M G + +Y L C AGK +EA + + P V +Y+ LI
Sbjct: 400 DLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRL 459
Query: 207 LDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
+ A + ++M +N C+PN+V M+ + G +EA KL M E +
Sbjct: 460 FKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCN--- 516
Query: 266 EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
P++ T+ M+D R + + ++M G
Sbjct: 517 ---------PNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKG 549
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/280 (19%), Positives = 122/280 (43%), Gaps = 22/280 (7%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTL--- 46
S+ P+ Y ++ L +A +KE D++ SM +L K G L
Sbjct: 374 SNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEA 433
Query: 47 -ERWDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
E + LE P++ Y+++++ + K+ + A VL ++ + P+ Y +++
Sbjct: 434 QEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDG 493
Query: 102 MLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ GK + Y+ ++ K PN + Y +++ + G+ ++ + ++ M +G +
Sbjct: 494 LCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPN 553
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y L CS G +EA ++++ + V Y +I+ + I + F
Sbjct: 554 FVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEG-FNREFIASLYLSFE 612
Query: 221 QMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
+N P +++ +++ G E A++L +E++ S
Sbjct: 613 ISENDSVPVAPVYRVLIDNFIKAGRLEIALELNEELSSFS 652
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 21/186 (11%)
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA 191
++L + GK EA+S +E E V LY + LC A EEA+ + ++ +
Sbjct: 16 FAHSLCKSGKWREALSLLEKEE---FVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASS 72
Query: 192 NKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAM 250
P V++Y L+ CL+ + I + M C P+ N +V AY G + A
Sbjct: 73 CLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAY 132
Query: 251 KLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDL----ELVYKRMLH 305
KL ++M + P +N ++ C++E+ D+ E Y ML
Sbjct: 133 KLLKKMVQCGCQ------------PGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLE 180
Query: 306 HGLHFN 311
G+ N
Sbjct: 181 AGVVLN 186
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 84/208 (40%), Gaps = 27/208 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
P+ V Y ++ G++G +++ +++ M R L TG L+
Sbjct: 517 PNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKL 576
Query: 53 LEP--------DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
LE + Y V+ R ++ + ++ ++ + P A Y ++++ +
Sbjct: 577 LEEMKQTYWPRHVAGYRKVIEGFNR--EFIASLYLSFEISENDSVPVAPVYRVLIDNFIK 634
Query: 105 CGKYNLVYEFFRKVQKSYIPNALA----YKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
G+ + E ++ S+ P + A + L+ L K D+A DM RG +
Sbjct: 635 AGRLEIALELNEELS-SFSPFSAANQNIHITLIENLSLAHKADKAFELYADMISRGSIPE 693
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKIC 188
++ L + L + EEAL +D IC
Sbjct: 694 LSILVHLIKGLLRVNRWEEALQLLDSIC 721
>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 743
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 141/330 (42%), Gaps = 52/330 (15%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNLVYEF 114
++ +N ++N + E A +L+++ + + P TY +++ M G+ + + E
Sbjct: 203 NVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKEL 262
Query: 115 FRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++K+ +PN + Y LV + G EA VE M++ ++ Y L LC+
Sbjct: 263 LLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCN 322
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--------- 224
AG E L MD + + +P VV+Y LI C + G A + QM+N
Sbjct: 323 AGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVT 382
Query: 225 -------FC---------------------SPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
C SP++VT + ++KAYL+ G A+++ +EM
Sbjct: 383 HNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREM 442
Query: 257 AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316
+ KG+ + I T NT+LDA E++ D+ + G + +
Sbjct: 443 GQ-----------KGIKMNTI-TLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYG 490
Query: 317 RMILDASRAGKVELLEITWEHLARADRITP 346
+I+ R KVE W+ + + +ITP
Sbjct: 491 TLIMGFFREEKVEKALEMWDEMKKV-KITP 519
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 121/257 (47%), Gaps = 15/257 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDIV Y+ ++ A ++ GA +++++ Q+G K + T +++ + K + +
Sbjct: 414 PDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNL 473
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K +I + + Y L+ +RE K ++A+ ++M++ I + + + L LC
Sbjct: 474 LNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCH 533
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVT 232
GK E A+ + D++ + P ++ +I G ++ A +N+ +K+ P+ T
Sbjct: 534 HGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYT 593
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
CNI++ + G+ E+A+ F + E+ RE D T+NTM+ A +K+
Sbjct: 594 CNILLNGLCKEGMTEKALNFFNTLIEE-----REV--------DTVTYNTMISAFCKDKK 640
Query: 293 WDDLELVYKRMLHHGLH 309
+ + M GL
Sbjct: 641 LKEAYDLLSEMEEKGLE 657
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 132/310 (42%), Gaps = 36/310 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + L AG ++E +++D+M+SL +L+PD+V YN ++
Sbjct: 308 PDLCTYNILINGLCNAGSMREGLELMDAMKSL---------------KLQPDVVTYNTLI 352
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK---- 120
+ C A +++Q++ G K + T+ + ++ + K V RKV++
Sbjct: 353 DGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVT---RKVKELVDM 409
Query: 121 -SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ P+ + Y L+ + G A+ + +M ++GI + + LC K +E
Sbjct: 410 HGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDE 469
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVK 238
A ++ K V+Y LI ++ A ++++MK +P + T N ++
Sbjct: 470 AHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIG 529
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
HG E AM+ F E+AE ++PD TFN+++ E R +
Sbjct: 530 GLCHHGKTELAMEKFDELAESG------------LLPDDSTFNSIILGYCKEGRVEKAFE 577
Query: 299 VYKRMLHHGL 308
Y + H
Sbjct: 578 FYNESIKHSF 587
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 133/305 (43%), Gaps = 37/305 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y +I + + G + +L +++ M+ K G L P+ V YN ++
Sbjct: 238 PDNVTYNTILKAMSKKGRLSDLKELLLDMK-------KNG--------LVPNRVTYNNLV 282
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + AF +++ +KQ P TY +++ + G E ++ +
Sbjct: 283 YGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQ 342
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ + G + EA +E ME G+ + + + LC K E +
Sbjct: 343 PDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRK 402
Query: 184 MDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ ++ + P +V+Y LI+A L G++ A + +M + N +T N ++ A
Sbjct: 403 VKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALC 462
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR-------WD 294
+ +EA L +S H K+G ++ ++ T+ T++ E++ WD
Sbjct: 463 KERKLDEAHNLL-----NSAH------KRGFIVDEV-TYGTLIMGFFREEKVEKALEMWD 510
Query: 295 DLELV 299
+++ V
Sbjct: 511 EMKKV 515
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 100/217 (46%), Gaps = 19/217 (8%)
Query: 90 PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSA 148
PS + + + L GK ++ + F+K+ + + PN L L+ L R + SA
Sbjct: 129 PSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSA 188
Query: 149 VE---DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK-ICKVANKPLVVSYTGLIQ 204
E DM + G+ + + L C GK E+AL +++ + + P V+Y +++
Sbjct: 189 REVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILK 248
Query: 205 ACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
A G + + + M KN PN VT N +V Y + G +EA ++ + M
Sbjct: 249 AMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELM------- 301
Query: 264 NREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELV 299
K+ V+PD+ T+N +++ C A + LEL+
Sbjct: 302 -----KQTNVLPDLCTYNILINGLCNAGSMREGLELM 333
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 15/153 (9%)
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL---DSGNIQNAA 216
S AL+ GK AL K+ ++ KP +++ L+ + S +I +A
Sbjct: 130 SKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAR 189
Query: 217 YIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
+F+ M K S N+ T N++V Y G E+A+ + + M + V P
Sbjct: 190 EVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFK-----------VNP 238
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
D T+NT+L A + + R DL+ + M +GL
Sbjct: 239 DNVTYNTILKAMSKKGRLSDLKELLLDMKKNGL 271
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
E D V YN +++A + K+ + A+ +L +++++G +P TY + +++ GK + E
Sbjct: 622 EVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDE 681
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+K + ++ R+ + + + + + A Y D+ LCS
Sbjct: 682 LLKKFSGKF-----------GSMKRDLQVETEKNPATSESKEELNTEAIAYSDVIDELCS 730
Query: 174 AGKCEE 179
G+ +E
Sbjct: 731 RGRLKE 736
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 4/139 (2%)
Query: 46 LERWDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
+E++D E PD +N+++ + + E AF + + KP T +++
Sbjct: 541 MEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNG 600
Query: 102 MLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
+ G FF + + + + Y +++ ++ K EA + +ME +G+
Sbjct: 601 LCKEGMTEKALNFFNTLIEEREVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDR 660
Query: 162 ALYYDLARCLCSAGKCEEA 180
Y L GK E
Sbjct: 661 FTYNSFISLLMEDGKLSET 679
>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
Length = 443
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/339 (19%), Positives = 148/339 (43%), Gaps = 29/339 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y ++ L + G ++E D++ + D PD+V Y +++
Sbjct: 67 PTIATYNALLNGLCKMGRLEEAIDLLRKI---------------VDNGCTPDVVTYTSLI 111
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ ++K+ A+ + +++ +G Y ++ +L GK ++ + + +
Sbjct: 112 DGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCV 171
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + +++ L + G+ AV + ME RG+ + +Y L LC A K + AL
Sbjct: 172 PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 231
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ ++ K P ++Y LI SG++ A F++M + C P++ T NI++ + +
Sbjct: 232 LAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCK 291
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + A +F +M+ P++ T+ T++ ++ L Y+
Sbjct: 292 AGNTDAACGVFDDMSSSRCS------------PNVVTYGTLISGLCKRRQLTKASLYYQH 339
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
M G ++ + ++ ++GK+E + ++ + R+
Sbjct: 340 MKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERS 378
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/329 (20%), Positives = 122/329 (37%), Gaps = 51/329 (15%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
DI Y +++ + K+ + A +++++ G P+ TY ++ + G+ +
Sbjct: 33 DIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLL 92
Query: 116 RK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
RK V P+ + Y L++ L ++ ++ EA ++M RG+ Y L R L A
Sbjct: 93 RKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQA 152
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM------------ 222
GK +A + P VV+ + +I +G I A IF M
Sbjct: 153 GKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVY 212
Query: 223 ------------------------KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
K FC+P+ +T NI++ + G A F EM E
Sbjct: 213 SALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLE 272
Query: 259 DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRM 318
PD+YT+N ++ D V+ M N + +
Sbjct: 273 AGCK------------PDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTL 320
Query: 319 ILDASRAGKVELLEITWEHLARADRITPP 347
I + ++ + ++H+ +R PP
Sbjct: 321 ISGLCKRRQLTKASLYYQHM--KERGCPP 347
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 132/319 (41%), Gaps = 34/319 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPK------------KKFKTGTLERWD 50
DTV Y ++ L QAG I + V +M S +P K + G R
Sbjct: 138 DTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIF 197
Query: 51 PRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
+E P+ VVY+A+++ + ++ + A +L Q+K+ P TY ++++ +
Sbjct: 198 KSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKS 257
Query: 106 GKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G FF + ++ P+ Y +L++ + G TD A +DM + Y
Sbjct: 258 GDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTY 317
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
L LC + +A + + + P Y+ L+ SG ++ +F++M+
Sbjct: 318 GTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMER 377
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
N T ++ + +EA+ LF N I +E +P Y +N+++
Sbjct: 378 SGVANSQTRTRLIFHLCKANRVDEAVSLF-------NAIRKEG------MPHPYAYNSII 424
Query: 285 DACAAEKRWDDLELVYKRM 303
A + ++ + VY+ M
Sbjct: 425 SALIKSGKVNEGQAVYQEM 443
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 16/176 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + +AG+ V D M S R P++V Y ++
Sbjct: 277 PDVYTYNILISGFCKAGNTDAACGVFDDMSS---------------SRCSPNVVTYGTLI 321
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ +R+Q A Q +K++G P + Y +++ + GK F ++++S +
Sbjct: 322 SGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVA 381
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
N+ L+ L + + DEAVS + + G+ A Y + L +GK E
Sbjct: 382 NSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGMPHPYA-YNSIISALIKSGKVNEG 436
>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
Length = 814
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 114/256 (44%), Gaps = 14/256 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V YN V++ + A + +++ Q+G P TY V+ + + F
Sbjct: 217 PNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAF 276
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
R+ V K +PN Y L+ G+ EAV ++M R I+ L LC
Sbjct: 277 LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 336
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
GK +EA D + P V SY ++ G + + +F+ M + +P+ T
Sbjct: 337 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT 396
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N+++KAY G+ ++AM +F EM R++ K PD+ T+ T++ A +
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEM--------RDHGVK----PDVVTYRTVIAALCRIGK 444
Query: 293 WDDLELVYKRMLHHGL 308
DD + +M+ G+
Sbjct: 445 MDDAMEKFNQMIDQGV 460
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 108/279 (38%), Gaps = 22/279 (7%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSM----------------RSLPKKKFKTGT 45
S PD V + +L + G IKE DV D+M K
Sbjct: 319 SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDM 378
Query: 46 LERWDPRL----EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
+ +D L PD +N ++ A + A + +++ G KP TY V+
Sbjct: 379 TDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAA 438
Query: 102 MLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ GK + E F + + + P+ AY L+ G +A + ++ G+
Sbjct: 439 LCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLD 498
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
+ + LC G+ +A D V P V Y+ L+ G ++ A +F+
Sbjct: 499 IVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFD 558
Query: 221 QMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
M + PN+V +V Y + G +E + LF+EM +
Sbjct: 559 AMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQ 597
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/339 (20%), Positives = 138/339 (40%), Gaps = 29/339 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V YR++ L + G + + + + M D + PD YN ++
Sbjct: 427 PDVVTYRTVIAALCRIGKMDDAMEKFNQM---------------IDQGVAPDKYAYNCLI 471
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKSYI 123
A ++ ++ G + ++ + G+ F V
Sbjct: 472 QGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLH 531
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+A+ Y +L++ GK ++A+ + M GI + +Y L C G+ +E L
Sbjct: 532 PDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSL 591
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + KP + Y+ +I +G A F++M ++ + ++ T NI+++ +
Sbjct: 592 FREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFK 651
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ F+EA+ LF+E+ + IN I T NTM+D +R ++ + ++
Sbjct: 652 NRCFDEAIFLFKELRAMNVKIN------------IITLNTMIDGMFQTRRVEEAKDLFAS 699
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
+ L + + MI + + G VE E + + A
Sbjct: 700 ISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNA 738
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/343 (19%), Positives = 130/343 (37%), Gaps = 64/343 (18%)
Query: 51 PR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
PR L P Y +++ C R + E A QL + G + + ++E + +
Sbjct: 104 PRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTD 163
Query: 110 LVYEFF--RKVQKSYIPNALAYKVLVNTL------------------------------- 136
+ R + +P+ +Y +L+ +L
Sbjct: 164 EALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYN 223
Query: 137 ------WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
++EG ++A ++M +RGI Y + LC A ++A + ++
Sbjct: 224 TVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNK 283
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEHGLFEEA 249
P +Y LI +G + A +F +M+ P++VT ++++ + ++G +EA
Sbjct: 284 RVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEA 343
Query: 250 MKLFQEMAEDS--------NHINREYDKKGLVI---------------PDIYTFNTMLDA 286
+F MA N + Y KG ++ PD YTFN ++ A
Sbjct: 344 RDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKA 403
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
A D +++ M HG+ + + +I R GK++
Sbjct: 404 YANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMD 446
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/299 (18%), Positives = 119/299 (39%), Gaps = 17/299 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V + ++ + + + + A V + +GQ P +Y +++ G + +
Sbjct: 322 PDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDL 381
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F + I P+ + VL+ G D+A+ +M G+ Y + LC
Sbjct: 382 FDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCR 441
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVT 232
GK ++A+ + +++ P +Y LIQ G++ A + ++ M N ++V
Sbjct: 442 IGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVF 501
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+ ++ + G +A +F H PD ++ ++D +
Sbjct: 502 FSSIINNLCKLGRVMDAQNIFDLTVNVGLH------------PDAVVYSMLMDGYCLVGK 549
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARADRITPPALI 350
+ V+ M+ G+ N + ++ + G++ E L + E L R I P ++
Sbjct: 550 MEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRG--IKPSTIL 606
>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
Length = 347
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 117/251 (46%), Gaps = 14/251 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D PDI+ YN VLN + + + A L+ L G +P+ +Y +V++ +
Sbjct: 6 EMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLFTAE 65
Query: 107 KYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
++ + ++ K PN + + +L++ L R G + A+ +E + + G ++ Y
Sbjct: 66 RWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYN 125
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN- 224
L C K ++A+ ++ + P +VSY L+ A +G + A + +Q+K
Sbjct: 126 PLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGK 185
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
CSP L++ N ++ + G +EA++L EM KGL PDI T+ T+
Sbjct: 186 GCSPVLISYNTVIDGLTKAGKTKEALELLDEMI-----------SKGLQ-PDIITYTTIA 233
Query: 285 DACAAEKRWDD 295
E + ++
Sbjct: 234 SGLCREDKIEE 244
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 109/221 (49%), Gaps = 3/221 (1%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ + YN +L+A ++K+ + A ++ + +G P +Y ++ + G+ ++ +
Sbjct: 119 PNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDL 178
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++ K P ++Y +++ L + GKT EA+ +++M +G+ Y +A LC
Sbjct: 179 LHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCR 238
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
K EEA+ K+ + +P VV Y ++ NA +F+ M N C PN T
Sbjct: 239 EDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNEST 298
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV 273
I+V+ GL +EA L ++ +N+++ KKG V
Sbjct: 299 YTILVEGLAYEGLVKEARDLLGQLC-SRGVVNKKFMKKGAV 338
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 20/157 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P ++Y ++ L +AG KE +++D M S L+PDI+ Y +
Sbjct: 189 PVLISYNTVIDGLTKAGKTKEALELLDEMIS---------------KGLQPDIITYTTIA 233
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK---YNLVYEFFRKVQKS 121
+ R + E A +++ G +P+ Y ++ + C + +N + F +
Sbjct: 234 SGLCREDKIEEAIRTFCKVQDMGIRPTVVLYNAIL--LGLCKRRETHNAIDLFSYMISNG 291
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+PN Y +LV L EG EA + + RG+V
Sbjct: 292 CMPNESTYTILVEGLAYEGLVKEARDLLGQLCSRGVV 328
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 84/183 (45%), Gaps = 13/183 (7%)
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+++M +G Y + +C G+ ++A+ ++ + +P VSY +++
Sbjct: 4 LDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLFT 63
Query: 209 SGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
+ ++A + +M + C PN+VT N+++ GL E AM++ +++
Sbjct: 64 AERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIP---------- 113
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
K G P+ ++N +L A +K+ D + M+ G + + + ++ R G+
Sbjct: 114 -KYGCT-PNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGE 171
Query: 328 VEL 330
V++
Sbjct: 172 VDV 174
>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 146/335 (43%), Gaps = 54/335 (16%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V Y ++ G +KE +++ M KT + P++ YN +++
Sbjct: 233 DVVTYSTLIYGFCIEGKLKEAIGLLNEMV------LKT---------INPNVYTYNILVD 277
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY--- 122
A + + + A VL + + KP TY +M+ Y LVYE +K Q +
Sbjct: 278 ALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMD------GYFLVYEV-KKAQHVFNAM 330
Query: 123 -----IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
P+ Y +L+N + DEA++ ++M ++ +V Y L LC +G+
Sbjct: 331 SLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRI 390
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIM 236
+D++ V++Y+ LI +G++ A +FN+MK+ PN+ T I+
Sbjct: 391 PYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTIL 450
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHIN--------REYDKKGLV--------------- 273
+ + G ++A ++FQ++ H+N + K+GL+
Sbjct: 451 LDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGC 510
Query: 274 IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
IP+ +TF T++ A + D E + ++M+ GL
Sbjct: 511 IPNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 545
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 128/299 (42%), Gaps = 39/299 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV ++ L G +K+ D + + + + V Y ++
Sbjct: 127 PDTVTLNTLIKGLCLKGQVKKALHFHDKLLA---------------QGFQLNQVSYATLI 171
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE----FFRKVQK 120
N + GA +L+++ + KP+ Y +++ A KY LV E F K
Sbjct: 172 NGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIID---ALCKYQLVSEAYGLFSEMTVK 228
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ + Y L+ EGK EA+ + +M + I + Y L LC GK +EA
Sbjct: 229 GISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEA 288
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
+ + K KP V++Y+ L+ ++ A ++FN M +P++ T I++
Sbjct: 289 KSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILING 348
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR----WD 294
+ ++ + +EA+ LF+EM + + ++P I T+++++D R WD
Sbjct: 349 FCKNKMVDEALNLFKEMHQKN------------MVPGIVTYSSLIDGLCKSGRIPYVWD 395
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/322 (21%), Positives = 128/322 (39%), Gaps = 50/322 (15%)
Query: 46 LERWDPRL-EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L + D RL +P++ +Y+ +++A + + A+ + ++ +G TY ++
Sbjct: 187 LRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCI 246
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAV-------------- 149
GK + V K+ PN Y +LV+ L +EGK EA S +
Sbjct: 247 EGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVIT 306
Query: 150 ---------------------EDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
M G+ Y L C +EAL ++
Sbjct: 307 YSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMH 366
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NLVTCNIMVKAYLEHGLFE 247
+ P +V+Y+ LI SG I + ++M++ P +++T + ++ ++G +
Sbjct: 367 QKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLD 426
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
A+ LF +M + + P+I+TF +LD R D + V++ +L G
Sbjct: 427 RAIALFNKMKDQE------------IRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKG 474
Query: 308 LHFNAKRHLRMILDASRAGKVE 329
H N + MI + G +E
Sbjct: 475 YHLNVYTYNVMINGHCKQGLLE 496
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 103/236 (43%), Gaps = 14/236 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PD++ N ++N Q F VL ++ ++G P T +++ + G+
Sbjct: 90 IQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKAL 149
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F K + + + N ++Y L+N + + G T A+ + ++ R + +Y + L
Sbjct: 150 HFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDAL 209
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C EA ++ VV+Y+ LI G ++ A + N+M +PN+
Sbjct: 210 CKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNV 269
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
T NI+V A + G +EA + M K V PD+ T++T++D
Sbjct: 270 YTYNILVDALCKEGKVKEAKSVLAVML------------KACVKPDVITYSTLMDG 313
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 21/175 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLERW--- 49
P V Y S+ L ++G I ++D+ID MR SL K G L+R
Sbjct: 372 PGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIAL 431
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
D + P+I + +L+ + + + A V Q L +G + TY +++
Sbjct: 432 FNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCK 491
Query: 105 CGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
G K++ + IPNA ++ ++ L+++ + D+A + M RG++
Sbjct: 492 QGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGLL 546
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/308 (19%), Positives = 116/308 (37%), Gaps = 51/308 (16%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R P I+ +N +L++ + K + A + +L+ +G +P T
Sbjct: 54 RHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITL---------------- 97
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+L+N G+ S + + +RG L + L
Sbjct: 98 ------------------NILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGL 139
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
C G+ ++AL DK+ + VSY LI G+ + A + ++ PN+
Sbjct: 140 CLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNV 199
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+ ++ A ++ L EA LF EM KG + D+ T++T++ E
Sbjct: 200 EMYSTIIDALCKYQLVSEAYGLFSEMTV-----------KG-ISADVVTYSTLIYGFCIE 247
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLEITWEHLARADRITP 346
+ + + M+ ++ N + ++ + GKV+ +L + + + D IT
Sbjct: 248 GKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITY 307
Query: 347 PALIKERF 354
L+ F
Sbjct: 308 STLMDGYF 315
>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 1011
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 41/373 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPK-----------------KKFKTG 44
P+ V Y ++ + G ++E +++ MR LP ++ +T
Sbjct: 458 PNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTY 517
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+E + RL P+ Y A ++ + + E A ++ G P+ Y ++E
Sbjct: 518 LMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCK 577
Query: 105 CGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + FR + + + + Y VL++ L R GK EA +++ +G++ +A
Sbjct: 578 EGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFT 637
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L C G ++A ++++C P +V+Y LI +G I+ A +F+ ++
Sbjct: 638 YNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIE 697
Query: 224 N-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+PN VT MV Y + A +L +EM V PD + +N
Sbjct: 698 GRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG------------VPPDAFIYNV 745
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA-SRAGKVE----LLEITWEH 337
+L+ C E++++ +++ ML G F + +++ ++GK++ LLE E
Sbjct: 746 ILNFCCKEEKFEKALDLFQEMLEKG--FASTVSFNTLIEGYCKSGKLQEANHLLEEMIEK 803
Query: 338 LARADRITPPALI 350
+ +T +LI
Sbjct: 804 QFIPNHVTYTSLI 816
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/329 (22%), Positives = 140/329 (42%), Gaps = 31/329 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y I L +A + E ++ SM D L PD+ Y+ ++
Sbjct: 248 PNLVTYNVIIGGLCRARLLDEAIELKRSM---------------VDKGLVPDLYTYDILI 292
Query: 65 NA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
N C+ ++ E +L+ + G KP TY +++ + G + ++ I
Sbjct: 293 NGFCMEKRSREAKLMLLEMI-DVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGI 351
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
N + + L+N + + GK ++A+ +++M +G+ + Y L C A
Sbjct: 352 EANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFE 411
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+D++ K P V++Y+ +I GN+Q I +M N PN V ++ A+
Sbjct: 412 LLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHA 471
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G EE+ + + M E ++PD++ +N+++ KR ++
Sbjct: 472 KEGRVEESRMILERMREQG------------ILPDVFCYNSLIIGFCKAKRMEEARTYLM 519
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVEL 330
ML L NA + I S+AG++E+
Sbjct: 520 EMLERRLRPNAHTYGAFIDGYSKAGEMEI 548
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/326 (20%), Positives = 140/326 (42%), Gaps = 29/326 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y ++ + G I++ F + D M + +E +++++N +L
Sbjct: 318 PEPITYNALIDGFMRQGDIEQAFRIKDEMVACG---------------IEANLIIWNTLL 362
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + + E A ++Q++ ++G +P + TY L++E +E +++K +
Sbjct: 363 NGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLA 422
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P L Y V++N L R G + + +M G+ +A +Y L G+ EE+ M
Sbjct: 423 PTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMI 482
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMKNFCSPNLVTCNIMVKAYLE 242
++++ + P V Y LI + ++ A Y+ ++ PN T + Y +
Sbjct: 483 LERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSK 542
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G E A + F EM V+P++ + +++ E + V++
Sbjct: 543 AGEMEIADRYFNEMLSCG------------VLPNVGIYTALIEGHCKEGNVTEAFSVFRF 590
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV 328
+L + + + + +I SR GK+
Sbjct: 591 ILSRRVLQDVQTYSVLIHGLSRNGKM 616
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 105/237 (44%), Gaps = 17/237 (7%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R+ D+ Y+ +++ R + AF + +L+++G P+A TY ++ G +
Sbjct: 595 RVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKA 654
Query: 112 YEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ ++ K P+ + Y +L++ L + G+ + A + +D+E RG+ + Y +
Sbjct: 655 SQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDG 714
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSP 228
C + A ++++ P Y ++ C + A +F +M K F S
Sbjct: 715 YCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFAST 774
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
V+ N +++ Y + G +EA L +EM E IP+ T+ +++D
Sbjct: 775 --VSFNTLIEGYCKSGKLQEANHLLEEMIEKQ------------FIPNHVTYTSLID 817
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 103/211 (48%), Gaps = 21/211 (9%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAV---EDME-RRGIVGSAALYYDLARCLCSAGKCEE 179
PN++ + +L+++ + G EAV+ ++ E R ++ +L DL + K E
Sbjct: 143 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLK----GNKVEL 198
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
D +C P V +YT +I A GN+++A + +M + CSPNLVT N+++
Sbjct: 199 FWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIG 258
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
L +EA++L + M + KGLV PD+YT++ +++ EKR + +L
Sbjct: 259 GLCRARLLDEAIELKRSMVD-----------KGLV-PDLYTYDILINGFCMEKRSREAKL 306
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ M+ GL + +I R G +E
Sbjct: 307 MLLEMIDVGLKPEPITYNALIDGFMRQGDIE 337
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/328 (21%), Positives = 135/328 (41%), Gaps = 35/328 (10%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFW-VLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
P ++ N++L ++ + E FW V + P TY ++ G
Sbjct: 178 PSLLSCNSLLGDLLKGNKVE-LFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKR 236
Query: 114 FFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++ +K PN + Y V++ L R DEA+ M +G+V Y L C
Sbjct: 237 VLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFC 296
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--PNL 230
+ EA + + ++ V KP ++Y LI + G+I+ A I ++M C NL
Sbjct: 297 MEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVA-CGIEANL 355
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAE-----DS-------------NHINREYD---- 268
+ N ++ + G E+A+++ QEM E DS ++ R ++
Sbjct: 356 IIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDE 415
Query: 269 -KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
KK + P + T++ +++ + + M+ +GL NA + ++ ++ G+
Sbjct: 416 MKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGR 475
Query: 328 VELLEITWEHLARADRITPPALIKERFC 355
VE + E R+ ++ + FC
Sbjct: 476 VEESRMILE------RMREQGILPDVFC 497
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 121/312 (38%), Gaps = 60/312 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHI---KELFDVIDSMRSLP-------------KKKFKTGTLER 48
PD V Y + L +AG I K LFD I+ P K K T +
Sbjct: 668 PDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQL 727
Query: 49 WDPRL----EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ L PD +YN +LN C + +++E A + Q++ ++G S ++ ++E
Sbjct: 728 LEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNTLIEGYCK 786
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVN------------TLWRE------------ 139
GK + ++K +IPN + Y L++ LW E
Sbjct: 787 SGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKT 846
Query: 140 -----------GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
G E + E+M +GI YY + C G EA D+I
Sbjct: 847 YTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEIL 906
Query: 189 KVANKPL-VVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLF 246
V P+ V +Y LIQA + N++ ++ L TC+++ + + G
Sbjct: 907 -VKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNM 965
Query: 247 EEAMKLFQEMAE 258
+EA ++ + M +
Sbjct: 966 DEAAEVLRSMVK 977
>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
Length = 544
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 81/377 (21%), Positives = 154/377 (40%), Gaps = 45/377 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +Y + L +G + E + +M PDI+ YN ++
Sbjct: 174 PDLESYHILLSALSDSGRMAEAHALFSAMTC------------------SPDIMTYNVLM 215
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + Q A +++++ + G +P+ TY +++ K +E F K ++ + +
Sbjct: 216 DGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCV 275
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA-GKCEEALM 182
PNA+ + L+ + G ++A+ +ME+ G + Y L LC G A+
Sbjct: 276 PNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVD 335
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLE 242
+K+ P +V+Y LIQ D+ + A F++M+ C+PN++T +I++ +
Sbjct: 336 LFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGKCAPNVITYSILIDGLCK 395
Query: 243 HGLFEEAMKLFQEMAE-----------------------DSNHINREYDKKGLVIPDIYT 279
+EA K ++M S + E K P+
Sbjct: 396 VRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVI 455
Query: 280 FNTMLDA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
FNT++D C AE+ D L L+ M G + + +I A +VE + ++ +
Sbjct: 456 FNTLIDGLCKAERANDGLRLLC-HMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGM 514
Query: 339 ARADRITPPALIKERFC 355
A A +T + C
Sbjct: 515 ACAPNVTTFNFLIRGLC 531
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 143/302 (47%), Gaps = 24/302 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ YN ++ + Q A V +K G P+A+T ++ + G+ + +
Sbjct: 30 PNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKL 89
Query: 115 FRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC- 172
FR++Q ++P + ++ +L+ + G+ +A++ ++DM + + Y + + LC
Sbjct: 90 FREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCW 149
Query: 173 ---SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPN 229
SA + E+A+ ++ +P + SY L+ A DSG + A +F+ M CSP+
Sbjct: 150 ENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMT--CSPD 207
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CA 288
++T N+++ Y + G EA L +E+ + Y+ P+++T++ +++ C
Sbjct: 208 IMTYNVLMDGYCKIGQTYEAQSLMKEI------LKAGYE------PNVFTYSIIINCYCK 255
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPA 348
+K + E V+ +M+ NA +I +AG +LE + A ++I A
Sbjct: 256 LDKVEEAWE-VFMKMIESNCVPNAVTFNTLIAGFCKAG---MLEDAIKLFAEMEKIGCKA 311
Query: 349 LI 350
I
Sbjct: 312 TI 313
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/293 (19%), Positives = 120/293 (40%), Gaps = 32/293 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V + ++ +AG +++ + M + K IV YN ++
Sbjct: 276 PNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCK---------------ATIVTYNTLI 320
Query: 65 NA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
++ C +R A + +L+ G P+ TY +++ + + ++F +++
Sbjct: 321 DSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGKCA 380
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y +L++ L + + EA +EDM+ G + Y L C G+ + AL+
Sbjct: 381 PNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLF 440
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+K+ P V + LI + + + M C P+++T N ++
Sbjct: 441 FEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCS 500
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
E+A +LF MA P++ TFN ++ A+K+ ++
Sbjct: 501 ANRVEDAQRLFDGMA---------------CAPNVTTFNFLIRGLCAQKKVEE 538
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 113/258 (43%), Gaps = 19/258 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+EPD+ Y+ +L+A + A + + P TY ++M+ G+
Sbjct: 172 VEPDLESYHILLSALSDSGRMAEAHALFSAMTCS---PDIMTYNVLMDGYCKIGQTYEAQ 228
Query: 113 EFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+++ K+ Y PN Y +++N + K +EA M V +A + L
Sbjct: 229 SLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGF 288
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMKNF-CSPN 229
C AG E+A+ ++ K+ K +V+Y LI + C G + A +FN+++ +P
Sbjct: 289 CKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPT 348
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+VT N +++ + + EAM+ F EM +G P++ T++ ++D
Sbjct: 349 IVTYNSLIQGFCDARRLSEAMQYFDEM-------------EGKCAPNVITYSILIDGLCK 395
Query: 290 EKRWDDLELVYKRMLHHG 307
+R + + M HG
Sbjct: 396 VRRMKEAAKTLEDMKAHG 413
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 91/203 (44%), Gaps = 18/203 (8%)
Query: 107 KYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K++ F++V + PNA Y VL+ + G+ +AVS DM+ G++ +A+
Sbjct: 12 KHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMN 71
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMKN 224
L LC G+ AL ++ P S+ L++ +G +++A A++ + K+
Sbjct: 72 TLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKS 131
Query: 225 FCSPNLVTCNIMVKAYL----EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
S T N+++K E+AM+ F+EM K V PD+ ++
Sbjct: 132 SSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEM------------KASGVEPDLESY 179
Query: 281 NTMLDACAAEKRWDDLELVYKRM 303
+ +L A + R + ++ M
Sbjct: 180 HILLSALSDSGRMAEAHALFSAM 202
>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
Length = 758
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 14/236 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PD+V N ++ A R Q A +L+++ G P TT+ +M+ + G
Sbjct: 193 IQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAAL 252
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
K+ ++ P + VL+N + G+ ++A+ ++ G Y L
Sbjct: 253 RVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGL 312
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
C G AL MD + + + P V +Y +I +G + A I NQM + C P+
Sbjct: 313 CQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDT 372
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
T N ++ A EEA+ L RE KGL PD+YTFN +++A
Sbjct: 373 TTFNTLIVALSSQNRLEEALDL-----------ARELTVKGLS-PDVYTFNILINA 416
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 116/283 (40%), Gaps = 27/283 (9%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P V N ++N + + E A +QQ G +P TY + + G + +
Sbjct: 265 PTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKV 324
Query: 115 FR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+Q+ + P+ Y ++N L + G+ DEA V M RG + + L L S
Sbjct: 325 MDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSS 384
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
+ EEAL ++ P V ++ LI A G+ +F +MK+ C+P+ VT
Sbjct: 385 QNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVT 444
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMA------------------------EDSNHINREYD 268
NI++ G A+ L EM E++ + + D
Sbjct: 445 YNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMD 504
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
+G+ + TFNT++D KR DD + ++M+ GL N
Sbjct: 505 AQGISRSAV-TFNTLIDGLCKAKRIDDATELIEQMVKEGLQPN 546
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/347 (21%), Positives = 144/347 (41%), Gaps = 30/347 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + L Q GH+ V+D M + G +PD+ YN V+
Sbjct: 300 PDQVTYNTFVHGLCQNGHVSHALKVMDLM-------LQEGH--------DPDVFTYNTVI 344
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
N + + + A ++ Q+ +G P TT+ ++ + + + + R++ K
Sbjct: 345 NCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLS 404
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + +L+N L + G + E+M+ G Y L LCS GK AL
Sbjct: 405 PDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDL 464
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
++++ V+Y +I A I+ A +F+QM S + VT N ++ +
Sbjct: 465 LNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCK 524
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
++A +L ++M K+GL P+ T+N++L + + +
Sbjct: 525 AKRIDDATELIEQMV-----------KEGLQ-PNNITYNSILTHYCKQGNIKKAADILET 572
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVEL-LEITWEHLARADRITPPA 348
M +G + + +I +AG+ ++ L++ + R TP A
Sbjct: 573 MTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKA 619
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 106/255 (41%), Gaps = 18/255 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + L G + D+++ M S PR V YN ++
Sbjct: 440 PDEVTYNILIDHLCSMGKLGNALDLLNEMES------------NGCPR---STVTYNTII 484
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+A ++ + E A V Q+ QG SA T+ +++ + + + E + V++
Sbjct: 485 DALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQ 544
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y ++ ++G +A +E M G Y L LC AG+ + AL
Sbjct: 545 PNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKL 604
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLE 242
+ + +P +Y +IQ+ N+++A +F +M P+ +T I+ ++
Sbjct: 605 LRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCR 664
Query: 243 -HGLFEEAMKLFQEM 256
G +EA EM
Sbjct: 665 GGGPIKEAFDFLVEM 679
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/284 (19%), Positives = 118/284 (41%), Gaps = 32/284 (11%)
Query: 56 DIVVYNAVLNACVRRKQWEGAF----WVLQQLKQQGQKPSATTYGLVMEVMLACGKYN-- 109
D +AV V++ GAF ++++++++G + A +E +++
Sbjct: 84 DFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVRSFVESYARLRRFDDA 143
Query: 110 --LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
LV + + + L+N L K S +M RGI L
Sbjct: 144 VDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTL 203
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI-FNQMKNFC 226
+ LC A + A++ ++++ P ++T L+Q ++ G+I+ A + M+ C
Sbjct: 204 IKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGC 263
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED------------------SNHINREYD 268
SP VT N+++ Y + G E+A+ Q+ D + H++
Sbjct: 264 SPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALK 323
Query: 269 KKGLVI-----PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
L++ PD++T+NT+++ + D+ + + +M+ G
Sbjct: 324 VMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRG 367
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 22/168 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS--LPKKKFKTGTL-------ERWDPRLE- 54
P+ + Y SI + G+IK+ D++++M + GTL R L+
Sbjct: 545 PNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKL 604
Query: 55 ----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML- 103
P YN V+ + RR A + +++ + G+ P A TY +V +
Sbjct: 605 LRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCR 664
Query: 104 ACGKYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVE 150
G ++F V K ++P ++++L L G D +SA+E
Sbjct: 665 GGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLGMDDYLISAIE 712
>gi|255660988|gb|ACU25663.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 376
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 135/282 (47%), Gaps = 15/282 (5%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ ++ PD VVYNA+LN R + + F + + + ++G + S +++ ++M + GK
Sbjct: 18 ESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGREGNR-SVSSFNIMMRGLFDNGKVE 76
Query: 110 LVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
V + ++KS ++ +++ Y +LV+ + G D+++ +E E++G V A Y +
Sbjct: 77 EVIXIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVVDAFAYSAMI 136
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CS 227
LC + A+ ++ + K KP Y LI + + ++A +F +M CS
Sbjct: 137 NGLCKEANLDRAVCVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCS 196
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P ++T N ++ ++ +F EA L +E+ + KGL P + T++ +
Sbjct: 197 PTIITYNTLINGLCKNEMFGEAYNLVKELLD-----------KGLN-PGVITYSMLXKGL 244
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + + ++ ++ G + + H +I GK++
Sbjct: 245 CLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQ 286
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 108/242 (44%), Gaps = 14/242 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D Y+A++N + + A VL + + G KP+A Y ++ ++ K+ F
Sbjct: 128 DAFAYSAMINGLCKEANLDRAVCVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVF 187
Query: 116 RKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
R++ + P + Y L+N L + EA + V+++ +G+ Y L + LC
Sbjct: 188 REMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLXKGLCLD 247
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
K E+AL +++ KP V + LI G +Q+A ++ M + C+PNLV+
Sbjct: 248 HKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQHALSLYFDMNRWKCAPNLVSH 307
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N +++ + + G A+ ++ + + + PDI ++N L + R
Sbjct: 308 NTLMEGFYKDGDIRNALVIWARILRNG------------LEPDIISYNITLKGLCSCNRI 355
Query: 294 DD 295
D
Sbjct: 356 SD 357
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/137 (18%), Positives = 57/137 (41%), Gaps = 1/137 (0%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D L P ++ Y+ + + E A + Q+ +G KP + +++ + + G
Sbjct: 224 ELLDKGLNPGVITYSMLXKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVG 283
Query: 107 KYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K + + + PN +++ L+ +++G A+ + R G+ Y
Sbjct: 284 KMQHALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343
Query: 166 DLARCLCSAGKCEEALM 182
+ LCS + +A++
Sbjct: 344 ITLKGLCSCNRISDAIL 360
>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]
Length = 1080
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 139/316 (43%), Gaps = 29/316 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + +G++ I+E+ V + M +K + E V YN ++
Sbjct: 788 PDEFTYNLLLDAMGKSMRIEEMLKVQEEMH---RKGY------------ESTYVTYNTII 832
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ V+ ++ E A + L QG P+ TYG +++ +L G+ F + ++
Sbjct: 833 SGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCK 892
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N Y +L+N G T++ +DM +GI Y + LC AG+ + L
Sbjct: 893 ANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTY 952
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ ++ +P +++Y LI S ++ A +FN+M K PNL T N ++ +
Sbjct: 953 FRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGK 1012
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G EA K+++E+ KG P+++T+N ++ + D Y R
Sbjct: 1013 AGKAAEAGKMYEELL-----------TKGWK-PNVFTYNALIRGYSVSGSTDSAYAAYGR 1060
Query: 303 MLHHGLHFNAKRHLRM 318
M+ G N+ ++++
Sbjct: 1061 MIVGGCLPNSSTYMQL 1076
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 148/350 (42%), Gaps = 36/350 (10%)
Query: 18 GQAGHIKELFDVIDSMRSLPKKKFKT-----------GTLERWDPRL----EPDIVV--- 59
G+ G + E+FDV+ R + K T G L L E IV+
Sbjct: 104 GRVGDMAEVFDVMQ--RQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAY 161
Query: 60 -YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
YN ++ V+ A V + + G PS TY ++M V R++
Sbjct: 162 TYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREM 221
Query: 119 QKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+ + PN +Y + + L + + DEA + ME G + L + LC AG+
Sbjct: 222 EAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRI 281
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIM 236
+A K+ K KP V+Y L+ D+G+ Q+ I+N MK + + N+V +
Sbjct: 282 SDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAV 341
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ A + G EA+++F EM + KG+V P+ Y++N+++ R+ D
Sbjct: 342 IDALCQVGRVFEALEMFDEMKQ-----------KGIV-PEQYSYNSLISGFLKADRFGDA 389
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
++K M HG N H+ I ++G+ + I L ++ I P
Sbjct: 390 LELFKHMDIHGPKPNGYTHVLFINYYGKSGE-SIKAIQRYELMKSKGIVP 438
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/383 (19%), Positives = 153/383 (39%), Gaps = 66/383 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ +Y LGQA E + ++ M + +PD++ + ++
Sbjct: 228 PNVYSYTICIRVLGQAKRFDEAYRILAKME---------------NEGCKPDVITHTVLI 272
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ A V ++K+ QKP TY +++ G V E + ++ Y
Sbjct: 273 QVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYN 332
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA--------- 174
N +AY +++ L + G+ EA+ ++M+++GIV Y L A
Sbjct: 333 DNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALEL 392
Query: 175 -----------------------GKCEEALMQMDKICKVANK---PLVVSYTGLIQACLD 208
GK E++ + + + +K P VV+ ++
Sbjct: 393 FKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAK 452
Query: 209 SGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
SG + A +F+++K SP+ +T +M+K + F+EA+K+F +M E++
Sbjct: 453 SGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENN------- 505
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
+PD+ N+++D R D+ ++ ++ L + ++ R GK
Sbjct: 506 -----CVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGK 560
Query: 328 VELLEITWEHLARADRITPPALI 350
V+ + E + ++ PP LI
Sbjct: 561 VKEVMHLLEEMYHSN--YPPNLI 581
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 121/279 (43%), Gaps = 14/279 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P++ Y + + K+++ A+ +L +++ +G KP T+ ++++V+ G+ +
Sbjct: 226 VKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAK 285
Query: 113 EFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F K++KS P+ + Y L++ G + + M+ G + Y + L
Sbjct: 286 DVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDAL 345
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C G+ EAL D++ + P SY LI L + +A +F M + PN
Sbjct: 346 CQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNG 405
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T + + Y + G E++K Q E K ++PD+ N +L A
Sbjct: 406 YTHVLFINYYGKSG---ESIKAIQRY---------ELMKSKGIVPDVVAGNAVLFGLAKS 453
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
R + V+ + G+ + + MI S+A K +
Sbjct: 454 GRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFD 492
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 102/247 (41%), Gaps = 36/247 (14%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y +L++ + + + +E + E+M R+G + Y + L + + E+A+
Sbjct: 788 PDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDL 847
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ P +Y L+ L +G I++A +FN+M + C N NI++ +
Sbjct: 848 YYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRI 907
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVI-------------------------PDI 277
G E+ LFQ+M + IN + ++I PD+
Sbjct: 908 AGNTEKVCHLFQDMVDQG--INPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDL 965
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV--------E 329
T+N ++D KR ++ ++ M G+ N + +IL +AGK E
Sbjct: 966 ITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEE 1025
Query: 330 LLEITWE 336
LL W+
Sbjct: 1026 LLTKGWK 1032
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/252 (19%), Positives = 105/252 (41%), Gaps = 16/252 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD VA ++ L ++G + V ++++ + PD + Y ++
Sbjct: 438 PDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMG---------------VSPDTITYTMMI 482
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
C + +++ A + + + P +++ + G+ + + F ++++ +
Sbjct: 483 KCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLE 542
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P Y L+ L REGK E + +E+M + Y + CLC G +AL
Sbjct: 543 PTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDM 602
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
+ + P + SY +I + A IF QMK P+ T ++ ++++
Sbjct: 603 LYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKI 662
Query: 244 GLFEEAMKLFQE 255
GL +EA+ + ++
Sbjct: 663 GLMKEALHIIKD 674
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 80/390 (20%), Positives = 148/390 (37%), Gaps = 77/390 (19%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M+ P Y ++ LG+ G +KE+ +++ M + P+++ Y
Sbjct: 539 MNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEM---------------YHSNYPPNLITY 583
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N +L+ + A +L + +G P ++Y V+ ++ +YN + F +++K
Sbjct: 584 NTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKK 643
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVED----------------------------- 151
IP+ ++ + + G EA+ ++D
Sbjct: 644 VLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEK 703
Query: 152 -MERRGIVGSAALYYD------LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204
+E I+ S+ + D L + LC K EA + K Y LI
Sbjct: 704 SIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLIC 763
Query: 205 ACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM---AEDS 260
+D I A +F +MK C P+ T N+++ A + EE +K+ +EM +S
Sbjct: 764 GLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYES 823
Query: 261 NHINREYDKKGLVIP-------DIY-------------TFNTMLDACAAEKRWDDLELVY 300
++ GLV D+Y T+ +LD R +D E ++
Sbjct: 824 TYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLF 883
Query: 301 KRMLHHGLHFNAKRHLRMILDASR-AGKVE 329
ML +G N + ++L+ R AG E
Sbjct: 884 NEMLEYGCKANCTIY-NILLNGHRIAGNTE 912
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 106/250 (42%), Gaps = 47/250 (18%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN-LVYE 113
PD+V NAVL + + A V +LK G P TY ++++ K++ V
Sbjct: 438 PDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKI 497
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F+ ++ + +P+ LA L++TL++ G+ DEA ++ + + Y L L
Sbjct: 498 FYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGR 557
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTC 233
GK +E + ++++ +N P PNL+T
Sbjct: 558 EGKVKEVMHLLEEMYH-SNYP---------------------------------PNLITY 583
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N ++ ++G +A+ + M KG IPD+ ++NT++ E+R+
Sbjct: 584 NTILDCLCKNGAVNDALDMLYSMT-----------TKG-CIPDLSSYNTVIYGLVKEERY 631
Query: 294 DDLELVYKRM 303
++ ++ +M
Sbjct: 632 NEAFSIFCQM 641
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/348 (20%), Positives = 130/348 (37%), Gaps = 59/348 (16%)
Query: 48 RWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKP----SATTYGLVMEVML 103
R PR P A + + +G L++ + +KP + + ++E+M
Sbjct: 42 RVQPRAPPPCDERRAAEDVIHALRSADGPAEALERFRSAARKPRVAHTTASCNYMLELMR 101
Query: 104 ACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G+ + E F +Q+ + N + + L EG A A+ M+ GIV +A
Sbjct: 102 GHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAY 161
Query: 163 LYYDLARCLCSAGKCEEAL-----MQMDKICKVAN------------------------- 192
Y L L +G EAL M +D +
Sbjct: 162 TYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREM 221
Query: 193 -----KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLF 246
KP V SYT I+ + A I +M+N C P+++T ++++ + G
Sbjct: 222 EAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRI 281
Query: 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306
+A +F +M ++ D+K PD T+ T+LD + ++ M
Sbjct: 282 SDAKDVFWKM--------KKSDQK----PDRVTYITLLDKFGDNGDSQSVMEIWNAMKAD 329
Query: 307 GLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERF 354
G + N + +I + G+V +E L D + ++ E++
Sbjct: 330 GYNDNVVAYTAVIDALCQVGRV------FEALEMFDEMKQKGIVPEQY 371
>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 583
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 127/289 (43%), Gaps = 30/289 (10%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R+ ++ +N +N R + A ++ +K G P+ TY +++ G +
Sbjct: 195 RIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKM 254
Query: 112 YE---FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
Y+ F +++ + I PN + + L++ ++ A A E+M+++G+ + Y L
Sbjct: 255 YKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSL 314
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
LC+ GK EEA+ DK+ + KP +V+Y LI ++ A +F+ + K
Sbjct: 315 INGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQEL 374
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED------------------------SNH 262
PN++T N M+ AY + G+ EE L M ++ +
Sbjct: 375 VPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKE 434
Query: 263 INREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
+ E + KGL D+ T+N ++D + + E + M + GL N
Sbjct: 435 LLNEMENKGLK-GDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPN 482
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 119/270 (44%), Gaps = 24/270 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y S+ L G ++E D+ D M L L+P+IV YNA++
Sbjct: 306 PNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLG---------------LKPNIVTYNALI 350
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR----KVQK 120
N ++K + A V + +Q P+ T+ +++ A K ++ E F + +
Sbjct: 351 NGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMID---AYCKEGMMEEGFSLCSSMLDE 407
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+PN Y L+ L R+ A + +ME +G+ G Y L LC K A
Sbjct: 408 GILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNA 467
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
++++ + KP V+Y L+ G ++ A + +M K PN+VT N+++K
Sbjct: 468 EKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKG 527
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINR-EYD 268
Y + E A L EM E + NR YD
Sbjct: 528 YCKINKLEAANGLLNEMLEKGLNPNRTTYD 557
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/337 (23%), Positives = 143/337 (42%), Gaps = 56/337 (16%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
++ + ++ A V+ + A+ + K G K S T+ ++ ++ K V +++
Sbjct: 131 LIIDMLVLAYVKNLELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKE 190
Query: 118 VQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC---S 173
+ K I L + + +N L R GK ++A A+EDM+ GI + Y L C S
Sbjct: 191 MIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGS 250
Query: 174 AGKC--EEALMQ-----------------MDKICKVAN----------------KPLVVS 198
AGK EA M+ +D CK N KP +V+
Sbjct: 251 AGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVT 310
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y LI ++G ++ A ++++M PN+VT N ++ + + + +EA K+F +++
Sbjct: 311 YNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVS 370
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
+ ++P++ TFNTM+DA E ++ + ML G+ N +
Sbjct: 371 KQE------------LVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNC 418
Query: 318 MILDASRAGKV----ELLEITWEHLARADRITPPALI 350
+I R + ELL + D +T LI
Sbjct: 419 LIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILI 455
>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
Length = 632
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 151/328 (46%), Gaps = 29/328 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P AY S+ + L G +++ ++ + M + + +PD V Y+A++
Sbjct: 192 PTAQAYNSMIIMLIHEGQYEKVHELYNEMSN--------------EGHCQPDTVTYSALI 237
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+A + + + A +L ++K+ G +P+A Y +++ + + F +++ Y
Sbjct: 238 SAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCR 297
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y L+ L + G+ DEA +M+R G + ++ L AG+ ++ L
Sbjct: 298 PDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKL 357
Query: 184 MDKICKVANKPLVVSYTGLIQACLDS-GNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYL 241
+++ P VV+Y +I+A +S + F +MK + SP+ T +I++ +
Sbjct: 358 FEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFC 417
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ E+AM L +EM D+KG P + +++DA KR+D +++
Sbjct: 418 KTNRIEKAMMLLEEM-----------DEKGFP-PCPAAYCSLIDALGKAKRYDLACELFQ 465
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + +A+ + MI +AG+++
Sbjct: 466 ELKENCGSSSARVYAVMIKHLGKAGRLD 493
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 142/305 (46%), Gaps = 35/305 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM----------------RSLPKKKFKTGTLER 48
PDTV ++ LG+AG + + + + M ++L + K + +
Sbjct: 333 PDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFS 392
Query: 49 WDPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
W R++ P Y+ +++ + + E A +L+++ ++G P Y +++ +
Sbjct: 393 WFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALG 452
Query: 104 ACGKYNLVYEFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+Y+L E F++++++ +A Y V++ L + G+ D+A++ ++M + G +
Sbjct: 453 KAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVY 512
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y L L A +EAL M K+ + P + SY ++ +G A + M
Sbjct: 513 AYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNM 572
Query: 223 KN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
KN P+ V+ N ++ A G+FEEA +L +EM N + EY D+ T++
Sbjct: 573 KNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEM----NALGFEY--------DLITYS 620
Query: 282 TMLDA 286
++L+A
Sbjct: 621 SILEA 625
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 114/237 (48%), Gaps = 16/237 (6%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV--QKSYIPNALAYKVLV 133
A + Q+K + +P+A Y ++ +++ G+Y V+E + ++ + P+ + Y L+
Sbjct: 178 AITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALI 237
Query: 134 NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANK 193
+ + G+ D A+ + +M+ G+ +A +Y + AL +++ + +
Sbjct: 238 SAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCR 297
Query: 194 PLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKL 252
P V +YT LI+ +G I A + +++M + C P+ V N M+ + G ++ +KL
Sbjct: 298 PDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKL 357
Query: 253 FQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK-RWDDLELVYKRMLHHGL 308
F+EM IP++ T+NT++ A K R ++ ++RM G+
Sbjct: 358 FEEMGVSH------------CIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGI 402
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/326 (20%), Positives = 134/326 (41%), Gaps = 35/326 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKKFKT-------------GTLER 48
PDTV Y ++ + G +++ M+ P K T G L
Sbjct: 228 PDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSL 287
Query: 49 WDPR----LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
++ PD+ Y ++ + + + A+ +++++G KP ++ +
Sbjct: 288 FEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGK 347
Query: 105 CGKYNLVYEFFRKVQKSY-IPNALAYKVLVNTLWR-EGKTDEAVSAVEDMERRGIVGSAA 162
G+ + + F ++ S+ IPN + Y ++ L+ + + E S E M+ GI S
Sbjct: 348 AGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPF 407
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y L C + E+A+M ++++ + P +Y LI A + A +F ++
Sbjct: 408 TYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQEL 467
Query: 223 KNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
K C S + +M+K + G ++A+ LF EM+ K G P++Y +N
Sbjct: 468 KENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMS-----------KLGCT-PNVYAYN 515
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHG 307
++ A D+ ++M HG
Sbjct: 516 ALMSGLARACMLDEALTTMRKMQEHG 541
>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
Length = 671
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 87/379 (22%), Positives = 161/379 (42%), Gaps = 51/379 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM----------------RSLPKK-------KF 41
PD ++R++ V + G ++E+ ++ +M RSL +K +F
Sbjct: 179 PDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEF 238
Query: 42 KTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
LE P P++V Y A ++ +R+ + AF VL+++ +G KP+ T+ +++
Sbjct: 239 FRRMLETGTP---PNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDG 295
Query: 102 MLACGKYNLVYEFFRKVQKS--YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+ G + F K+ KS Y PN Y V++ REGK A + M +G+
Sbjct: 296 LCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKP 355
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219
+ Y L C G + A M+K+ + P + +Y +I G IQ A +
Sbjct: 356 NTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEA---Y 412
Query: 220 NQMKNFCSPNL----VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
++ S L +T I++ + + G A+ LF M E+ P
Sbjct: 413 KVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENG------------CCP 460
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITW 335
DI + +++ +++ ++ + + + L GL + + MI + G+ L +
Sbjct: 461 DIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVF 520
Query: 336 EHLAR----ADRITPPALI 350
E + + AD IT ALI
Sbjct: 521 ERMVQNGCFADSITYGALI 539
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 85/206 (41%), Gaps = 2/206 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+P+ Y ++ + ++ AF ++ ++KQ+G P+ TY V++ GK Y
Sbjct: 353 LKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAY 412
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ R + + + Y +L+ ++G A+ + M G Y L
Sbjct: 413 KVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTY 472
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C + EE+ DK + P +YT +I G A +F +M +N C +
Sbjct: 473 CQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADS 532
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEM 256
+T ++ + EEA L++ M
Sbjct: 533 ITYGALISGLCKESRLEEAKALYEGM 558
>gi|255661002|gb|ACU25670.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 376
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 143/296 (48%), Gaps = 19/296 (6%)
Query: 37 PKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG 96
P++ +K E + ++ PD VV+NA+LN R + + F + + + +G + S +++
Sbjct: 9 PERVYK----EIVESKVSPDAVVHNAMLNGYFRVAKIKDCFELWEMMGNEGNR-SVSSFN 63
Query: 97 LVMEVMLACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERR 155
++M + GK + V + ++KS ++ +++ + +LV+ + G ++++ +E Z +
Sbjct: 64 IMMRGLFDKGKVDEVISIWELMKKSDFVEDSITFGILVHGFCKNGYINKSLHVLEMAZXK 123
Query: 156 GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA 215
G V A Y + LC ++A+ ++ + K KP Y LI + + ++A
Sbjct: 124 GGVLDAFAYSAMINGLCKEANLDKAVXVLNDMIKSGCKPNAHVYNTLINGLVGASKFEDA 183
Query: 216 AYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI 274
+F +M CSP ++T N ++ ++ +F EA L ++M E KGL
Sbjct: 184 IRVFREMGXVRCSPTIITYNTLINGLCKNEMFGEAYDLVKDMLE-----------KGLN- 231
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
P + T++ ++ + + + ++ +++ G + + H +I GK +L
Sbjct: 232 PSVITYSMLMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTQL 287
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 120/292 (41%), Gaps = 29/292 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D++ + + + G+I + S+ L + K G L D Y+A++N
Sbjct: 93 DSITFGILVHGFCKNGYINK------SLHVLEMAZXKGGVL---------DAFAYSAMIN 137
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ + A VL + + G KP+A Y ++ ++ K+ FR++ P
Sbjct: 138 GLCKEANLDKAVXVLNDMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGXVRCSP 197
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ Y L+N L + EA V+DM +G+ S Y L + LC K E AL
Sbjct: 198 TIITYNTLINGLCKNEMFGEAYDLVKDMLEKGLNPSVITYSMLMKGLCLDHKVERALQLW 257
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
+++ KP V + LI G Q A ++ M + C+PNLVT N +++ + +
Sbjct: 258 NQVISKGFKPDVQMHNILIHGLCSVGKTQLALSLYFDMNRWKCAPNLVTHNTLMEGFYKD 317
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
G A+ ++ + + PDI ++N L + R D
Sbjct: 318 GDIRNALVIWARXLRNG------------LEPDIISYNITLKGLCSCNRICD 357
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 37/175 (21%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R P I+ YN ++N + + + A+ +++ + ++G PS TY ++M+ + K
Sbjct: 194 RCSPTIITYNTLINGLCKNEMFGEAYDLVKDMLEKGLNPSVITYSMLMKGLCLDHKVERA 253
Query: 112 YEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER---------------- 154
+ + +V K + P+ + +L++ L GKT A+S DM R
Sbjct: 254 LQLWNQVISKGFKPDVQMHNILIHGLCSVGKTQLALSLYFDMNRWKCAPNLVTHNTLMEG 313
Query: 155 -------------------RGIVGSAALYYDLARCLCSAGK-CEEALMQMDKICK 189
G+ Y + LCS + C+ L D + K
Sbjct: 314 FYKDGDIRNALVIWARXLRNGLEPDIISYNITLKGLCSCNRICDAILFLHDAVRK 368
>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
Length = 447
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 131/325 (40%), Gaps = 37/325 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +Y + L +G + E + +M PDI+ YN ++
Sbjct: 125 PDLESYHILLSALSDSGRMAEAHALFSAMTC------------------SPDIMTYNVLM 166
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + Q A +++++ + G +P+ TY +++ K +E F K ++ + +
Sbjct: 167 DGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCV 226
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA-GKCEEALM 182
PNA+ + L+ + G ++A+ +ME+ G + Y L LC G A+
Sbjct: 227 PNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVD 286
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLE 242
+K+ P +V+Y LIQ + N + + C P+++T N ++
Sbjct: 287 LFNKLEGAGLTPTIVTYNSLIQGFSERAN-DGLRLLCHMHAEGCKPDVITYNCLISGLCS 345
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGL----------------VIPDIYTFNTMLDA 286
E+A +LF MA N + +GL PD+ TFNT++ A
Sbjct: 346 ANRVEDAQRLFNGMACAPNVTTFNFLIRGLCAQKKVEEARNILDRMTAPDMTTFNTIILA 405
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFN 311
D V K ML HG + N
Sbjct: 406 FCKAGAMHDAREVMKDMLKHGFYPN 430
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 114/263 (43%), Gaps = 43/263 (16%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ YN ++ + Q A V +K G P+A+T ++ + G+ + +
Sbjct: 23 PNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKL 82
Query: 115 FRKVQKS-YIPNALAYKVLVNTLWREGKTDE-----AVSAVE-DMERRGIVGSA------ 161
FR++Q ++P + ++ +L+ + G+ E S VE D+E I+ SA
Sbjct: 83 FREMQAGPFLPTSASHNILLRGFFMAGRAIEFFKEMKASGVEPDLESYHILLSALSDSGR 142
Query: 162 -----------------ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204
Y L C G+ EA M +I K +P V +Y+ +I
Sbjct: 143 MAEAHALFSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIIN 202
Query: 205 ACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
++ A +F +M ++ C PN VT N ++ + + G+ E+A+KLF EM
Sbjct: 203 CYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEM------- 255
Query: 264 NREYDKKGLVIPDIYTFNTMLDA 286
+K G I T+NT++D+
Sbjct: 256 ----EKIG-CKATIVTYNTLIDS 273
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 120/278 (43%), Gaps = 52/278 (18%)
Query: 107 KYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K++ F++V + PNA Y VL+ + G+ +AVS DM+ G++ +A+
Sbjct: 5 KHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMN 64
Query: 166 DLARCLCSAGKCEEAL-------------------------------MQMDKICKVAN-K 193
L LC G+ AL ++ K K + +
Sbjct: 65 TLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRAIEFFKEMKASGVE 124
Query: 194 PLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253
P + SY L+ A DSG + A +F+ M CSP+++T N+++ Y + G EA L
Sbjct: 125 PDLESYHILLSALSDSGRMAEAHALFSAMT--CSPDIMTYNVLMDGYCKIGQTYEAQSLM 182
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKRMLHHGLHFNA 312
+E+ + Y+ P+++T++ +++ C +K + E V+ +M+ NA
Sbjct: 183 KEI------LKAGYE------PNVFTYSIIINCYCKLDKVEEAWE-VFMKMIESNCVPNA 229
Query: 313 KRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
+I +AG +LE + A ++I A I
Sbjct: 230 VTFNTLIAGFCKAG---MLEDAIKLFAEMEKIGCKATI 264
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 104/226 (46%), Gaps = 17/226 (7%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNT 135
A +++K G +P +Y +++ + G+ + F + S P+ + Y VL++
Sbjct: 111 AIEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMTCS--PDIMTYNVLMDG 168
Query: 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL 195
+ G+T EA S ++++ + G + Y + C C K EEA K+ + P
Sbjct: 169 YCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPN 228
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYL-EHGLFEEAMKLF 253
V++ LI +G +++A +F +M+ C +VT N ++ + + G A+ LF
Sbjct: 229 AVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLF 288
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
++ + GL P I T+N+++ +E+ D L L+
Sbjct: 289 NKL-----------EGAGLT-PTIVTYNSLIQG-FSERANDGLRLL 321
>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
Length = 827
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 114/256 (44%), Gaps = 14/256 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V YN V++ + A + +++ Q+G P TY V+ + + F
Sbjct: 230 PNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAF 289
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
R+ V K +PN Y L+ G+ EAV ++M R I+ L LC
Sbjct: 290 LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 349
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
GK +EA D + P V SY ++ G + + +F+ M + +P+ T
Sbjct: 350 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT 409
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N+++KAY G+ ++AM +F EM R++ K PD+ T+ T++ A +
Sbjct: 410 FNVLIKAYANCGMLDKAMIIFNEM--------RDHGVK----PDVVTYRTVIAALCRIGK 457
Query: 293 WDDLELVYKRMLHHGL 308
DD + +M+ G+
Sbjct: 458 MDDAMEKFNQMIDQGV 473
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 108/279 (38%), Gaps = 22/279 (7%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSM----------------RSLPKKKFKTGT 45
S PD V + +L + G IKE DV D+M K
Sbjct: 332 SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDM 391
Query: 46 LERWDPRL----EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
+ +D L PD +N ++ A + A + +++ G KP TY V+
Sbjct: 392 TDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAA 451
Query: 102 MLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ GK + E F + + + P+ AY L+ G +A + ++ G+
Sbjct: 452 LCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLD 511
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
+ + LC G+ +A D V P V Y+ L+ G ++ A +F+
Sbjct: 512 IVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFD 571
Query: 221 QMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
M + PN+V +V Y + G +E + LF+EM +
Sbjct: 572 AMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQ 610
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/339 (20%), Positives = 138/339 (40%), Gaps = 29/339 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V YR++ L + G + + + + M D + PD YN ++
Sbjct: 440 PDVVTYRTVIAALCRIGKMDDAMEKFNQM---------------IDQGVAPDKYAYNCLI 484
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKSYI 123
A ++ ++ G + ++ + G+ F V
Sbjct: 485 QGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLH 544
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+A+ Y +L++ GK ++A+ + M GI + +Y L C G+ +E L
Sbjct: 545 PDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSL 604
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + KP + Y+ +I +G A F++M ++ + ++ T NI+++ +
Sbjct: 605 FREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFK 664
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ F+EA+ LF+E+ + IN I T NTM+D +R ++ + ++
Sbjct: 665 NRCFDEAIFLFKELRAMNVKIN------------IITLNTMIDGMFQTRRVEEAKDLFAS 712
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
+ L N + MI + + G VE E + + A
Sbjct: 713 ISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNA 751
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/343 (19%), Positives = 130/343 (37%), Gaps = 64/343 (18%)
Query: 51 PR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
PR L P Y +++ C R + E A QL + G + + ++E + +
Sbjct: 117 PRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTD 176
Query: 110 LVYEFF--RKVQKSYIPNALAYKVLVNTL------------------------------- 136
+ R + +P+ +Y +L+ +L
Sbjct: 177 EALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYN 236
Query: 137 ------WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
++EG ++A ++M +RGI Y + LC A ++A + ++
Sbjct: 237 TVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNK 296
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEHGLFEEA 249
P +Y LI +G + A +F +M+ P++VT ++++ + ++G +EA
Sbjct: 297 RVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEA 356
Query: 250 MKLFQEMAEDS--------NHINREYDKKGLVI---------------PDIYTFNTMLDA 286
+F MA N + Y KG ++ PD YTFN ++ A
Sbjct: 357 RDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKA 416
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
A D +++ M HG+ + + +I R GK++
Sbjct: 417 YANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMD 459
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/299 (18%), Positives = 119/299 (39%), Gaps = 17/299 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V + ++ + + + + A V + +GQ P +Y +++ G + +
Sbjct: 335 PDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDL 394
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F + I P+ + VL+ G D+A+ +M G+ Y + LC
Sbjct: 395 FDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCR 454
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVT 232
GK ++A+ + +++ P +Y LIQ G++ A + ++ M N ++V
Sbjct: 455 IGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVF 514
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+ ++ + G +A +F H PD ++ ++D +
Sbjct: 515 FSSIINNLCKLGRVMDAQNIFDLTVNVGLH------------PDAVVYSMLMDGYCLVGK 562
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARADRITPPALI 350
+ V+ M+ G+ N + ++ + G++ E L + E L R I P ++
Sbjct: 563 MEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRG--IKPSTIL 619
>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
Length = 628
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 126/278 (45%), Gaps = 19/278 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++ YN +++ + KQ + A ++ ++ G P TY +++ + GK + +
Sbjct: 337 PNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDL 396
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ K + P++ ++N L + GK D A+S +E M+ RG Y L LC
Sbjct: 397 LEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCK 456
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
AG+ +EA+ + K+ P V SYT +I A SG A IF +M K P+ V
Sbjct: 457 AGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVL 516
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEK 291
+ ++ +GL + A++L K L PD +LD C A K
Sbjct: 517 YHSLLDGLARNGLEDLALELL---------------KTSLCKPDFVMHKMVLDGLCKAGK 561
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
D E+V +RM G +A ++ ++ + GKV+
Sbjct: 562 AEDACEVV-ERMADAGFPADAFTYISVVSGLRKLGKVD 598
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 131/297 (44%), Gaps = 34/297 (11%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V +N++L ++ AF + + + + G +P+ +Y +++ + G+ +
Sbjct: 142 PDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRL 201
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ + V+KS +P+ +AY V L + + EA M +G A + + LC
Sbjct: 202 WEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCK 261
Query: 174 AGKCEEALMQM----------DKICKVANK-------PLVVSYTGLIQACLDSGNIQNAA 216
G EEA QM D+ CK + P + LI A S + +
Sbjct: 262 KGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGV 321
Query: 217 YIFNQMKN----FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGL 272
+F +MK+ +C PNL T NIMV + +EA +L EMA N+ GL
Sbjct: 322 LLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMA---NY--------GL 370
Query: 273 VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
PD+ T++ ++D + D + + M G+ ++ ++ S+AGKV+
Sbjct: 371 S-PDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVD 426
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 150/372 (40%), Gaps = 61/372 (16%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRS----------------LPKKKF---- 41
S PD VAY S L +A + E D M + L KK
Sbjct: 209 SCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEA 268
Query: 42 ---------KTGTLERWDPRLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLK 84
++G L+ E P ++N +++A + K+ + Q++K
Sbjct: 269 QNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMK 328
Query: 85 QQGQ---KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREG 140
+ P+ TY ++++ + + + E ++ + P+ + Y LV+ L + G
Sbjct: 329 SMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLG 388
Query: 141 KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYT 200
K D A +E+M + G+ + + L AGK + AL ++ + + P +V+Y
Sbjct: 389 KLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYN 448
Query: 201 GLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
L+ +G I A +M C+P++ + I++ A G A +FQEM
Sbjct: 449 TLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMV-- 506
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD-DLELVYKRMLHHGLHFNAKRHLRM 318
K+G V+PD ++++LD A D LEL+ + + +M
Sbjct: 507 ---------KRG-VLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMH-----KM 551
Query: 319 ILDA-SRAGKVE 329
+LD +AGK E
Sbjct: 552 VLDGLCKAGKAE 563
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 123/302 (40%), Gaps = 67/302 (22%)
Query: 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR 116
+ YN L+A + + A+ QQ++++G P TY +V+ + G+ + E
Sbjct: 38 VFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLG 97
Query: 117 KVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMER-RGIVGSAALYYDLARCLCSA 174
++++S + N + Y V+++ + + D+A+ + M G V + L + LCS
Sbjct: 98 QLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSG 157
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT- 232
+ EA + + + K +P V+SY+ L+ +G + A ++ +M + C P+LV
Sbjct: 158 ERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAY 217
Query: 233 -------------------CNIMV----------------------------KAYLEH-- 243
C MV +EH
Sbjct: 218 TSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLC 277
Query: 244 --GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G+ +EA K F+EM I+R + P FNT++ A KR D L+++
Sbjct: 278 RSGMLDEACKTFEEM------ISRNHP------PSAELFNTLIHAVCKSKRLPDGVLLFQ 325
Query: 302 RM 303
RM
Sbjct: 326 RM 327
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 96/215 (44%), Gaps = 16/215 (7%)
Query: 95 YGLVMEVMLACGKYNLVYEFFRKV--QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM 152
Y +V EV+ GK + + F + QK Y + Y ++ L + A + M
Sbjct: 5 YTVVGEVLRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQM 64
Query: 153 ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI 212
+RRG Y + R LC AG+ ++A + ++ + K V++Y+ +I C + +
Sbjct: 65 QRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRV 124
Query: 213 QNAAYIFNQMKN--FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270
+A IF M + C P++VT N ++K EA LF+ MA K
Sbjct: 125 DDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMA------------K 172
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
P++ +++T+LD R D+ +++ M+
Sbjct: 173 AGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVE 207
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 116/278 (41%), Gaps = 24/278 (8%)
Query: 68 VRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIPNA 126
VR W G +Q+G + S TY ++ + L YE F+++Q + Y P+
Sbjct: 22 VRLFDWLG--------RQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDD 73
Query: 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK 186
Y +++ L + G+ D+A + + G+ + Y + C A + ++AL
Sbjct: 74 FTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKT 133
Query: 187 ICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHG 244
+ P VV++ L++ + A +F M K C PN+++ + ++ + G
Sbjct: 134 MSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAG 193
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
+EA +L++EM E S +PD+ + + + R + ++M+
Sbjct: 194 RLDEACRLWEEMVEKS------------CVPDLVAYTSFVTGLCKANRVAEACDCCRKMV 241
Query: 305 HHGLHFNAKRHLRMILDASRAGKVELLEITW-EHLARA 341
G +A +I + G E + EHL R+
Sbjct: 242 TKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRS 279
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 98/251 (39%), Gaps = 51/251 (20%)
Query: 1 MSSY---PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDI 57
M++Y PD V Y ++ L + G + D+++ M K G PD
Sbjct: 365 MANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMS-------KEGVF--------PDS 409
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
++LNA + + + A L+ +K +G P TY +++ + G+ + F K
Sbjct: 410 FTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAK 469
Query: 118 -VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL----AR--- 169
V P+ +Y +++ L R G+ A + ++M +RG++ LY+ L AR
Sbjct: 470 MVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGL 529
Query: 170 ------------C-------------LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204
C LC AGK E+A ++++ +Y ++
Sbjct: 530 EDLALELLKTSLCKPDFVMHKMVLDGLCKAGKAEDACEVVERMADAGFPADAFTYISVVS 589
Query: 205 ACLDSGNIQNA 215
G + A
Sbjct: 590 GLRKLGKVDKA 600
>gi|145517919|ref|XP_001444837.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412270|emb|CAK77440.1| unnamed protein product [Paramecium tetraurelia]
Length = 981
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 140/350 (40%), Gaps = 62/350 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y + AG + F +++ M+ ++ D + YN ++
Sbjct: 390 PDQIIYNCLLDACINAGDLNRGFQLLNEMKQ--------------SQTIQLDEITYNTLI 435
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-- 122
C R+K+ A + +++K G KP+ ++ +++ + C K N+ + +F +++K Y
Sbjct: 436 KGCGRKKRLNDALNLFEEMKLIGIKPNRISFNSLLDSCVKCNKMNIAWRYFEEMRKQYGI 495
Query: 123 IPNALAYKVLVNTL-WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
P+ Y +LVN + DE + A+ +E+ G
Sbjct: 496 FPDNFTYSILVNGIKTNHSNRDELLRAITLLEQIQETGQF-------------------- 535
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAY 240
KP + Y LI AC+ IQ +F +MKN P+ VT I++KAY
Sbjct: 536 -----------KPDEILYNSLIDACVKFNEIQKGMELFREMKNKQIEPSSVTYGILIKAY 584
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ A K+F+EM + K + I D+ T+ ++DAC R D
Sbjct: 585 GKQNDLNGAFKIFEEMKQ-----------KKIPINDV-TYGCLVDACVRNDRLDQALQFI 632
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
+M L N + +I + + E I + L + T P LI
Sbjct: 633 DQMKSQNLPINTVLYTTIIKGFCKLNQTE-EAIKYFDLMKQSPKTYPNLI 681
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 142/297 (47%), Gaps = 33/297 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIK--ELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
+PD Y SI V + H EL I + + + TG + +PD ++YN
Sbjct: 496 FPDNFTY-SILVNGIKTNHSNRDELLRAITLLEQIQE----TG-------QFKPDEILYN 543
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
++++ACV+ + + + +++K + +PS+ TYG++++ N ++ F ++++
Sbjct: 544 SLIDACVKFNEIQKGMELFREMKNKQIEPSSVTYGILIKAYGKQNDLNGAFKIFEEMKQK 603
Query: 122 YIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
IP N + Y LV+ R + D+A+ ++ M+ + + + LY + + C + EEA
Sbjct: 604 KIPINDVTYGCLVDACVRNDRLDQALQFIDQMKSQNLPINTVLYTTIIKGFCKLNQTEEA 663
Query: 181 LMQMDKICKVANK--PLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMV 237
+ D + K + K P +++Y L+ + +G + A +F ++ + P+L+T + ++
Sbjct: 664 IKYFD-LMKQSPKTYPNLITYNSLLDGMVKNGLLNQADKLFQELVDSKIKPDLITFSTLL 722
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI-PDIYTFNTMLDACAAEKRW 293
K + G + + Q M GL I PD +L+AC ++++
Sbjct: 723 KGHCRKGNMKRLNETVQIMT-------------GLQISPDESLLQLILEACLNQQQY 766
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/250 (20%), Positives = 104/250 (41%), Gaps = 20/250 (8%)
Query: 48 RWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK 107
R +++P IV N +++ + Q E A+ + LK KP TY ++ +
Sbjct: 312 RDQAKIQPTIVTINTMIDQYFKNNQREKAWKTFENLKLTQTKPDNFTYTTLINGLKNSDN 371
Query: 108 YN--LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ L + F + ++ P+ + Y L++ G + + +M++ + + Y
Sbjct: 372 MDLKLAFSLFEEYKQYNQPDQIIYNCLLDACINAGDLNRGFQLLNEMKQSQTIQLDEITY 431
Query: 166 DLARCLCSAGK-CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
+ C K +AL +++ + KP +S+ L+ +C+ + A F +M+
Sbjct: 432 NTLIKGCGRKKRLNDALNLFEEMKLIGIKPNRISFNSLLDSCVKCNKMNIAWRYFEEMRK 491
Query: 225 FCS--PNLVTCNIMVKAY-LEHGLFEE---AMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
P+ T +I+V H +E A+ L +++ E G PD
Sbjct: 492 QYGIFPDNFTYSILVNGIKTNHSNRDELLRAITLLEQIQE-----------TGQFKPDEI 540
Query: 279 TFNTMLDACA 288
+N+++DAC
Sbjct: 541 LYNSLIDACV 550
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 16/148 (10%)
Query: 193 KPLVVSYTGLIQACLDSGN--IQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAM 250
KP +YT LI +S N ++ A +F + K + P+ + N ++ A + G
Sbjct: 353 KPDNFTYTTLINGLKNSDNMDLKLAFSLFEEYKQYNQPDQIIYNCLLDACINAGDLNRGF 412
Query: 251 KLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHF 310
+L EM + + D T+NT++ C +KR +D +++ M G+
Sbjct: 413 QLLNEMKQSQT-----------IQLDEITYNTLIKGCGRKKRLNDALNLFEEMKLIGIKP 461
Query: 311 NAKRHLRMILDASRAGKVELLEITWEHL 338
N + +LD+ K + I W +
Sbjct: 462 N-RISFNSLLDS--CVKCNKMNIAWRYF 486
>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
Length = 535
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 146/319 (45%), Gaps = 28/319 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD V Y A+++ + ++ +++ +P+ TY ++++ + K +
Sbjct: 104 PDSVTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDV 163
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F + ++K + P+ +AY L++ L + G+ DEA V+ M RG +A Y + LC
Sbjct: 164 FEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCK 223
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
G+ +EA+ + ++ + +P V +Y+ ++ + G ++ A + +M + C+P+ ++
Sbjct: 224 CGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTIS 283
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAED------------------------SNHINREYD 268
+ ++A G EEA K+F+ M E + H+ R D
Sbjct: 284 YTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMD 343
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
K V P+ Y + ++D R ++ +Y+R+L G+ + + +I + K+
Sbjct: 344 KAA-VKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKM 402
Query: 329 -ELLEITWEHLARADRITP 346
E LE+ E R + + P
Sbjct: 403 DEALELLREMQRRKEELEP 421
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 108/257 (42%), Gaps = 21/257 (8%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQG-------QKPSATTYGLVMEVMLACGKYNLVY 112
+ +L+A R+ + A ++ + P + TY +++ + G Y+
Sbjct: 67 HGVILSALCARRDLDKAVSYFNSRTEEACRLFEAIEAPDSVTYTAIVDGLFKAGNYDAGL 126
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E++ K+ S P L Y VLV+ L + K + A E+M R+G Y L L
Sbjct: 127 EYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGL 186
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV 231
AG+ +EA +D + P V+YT ++ G IQ A +M+ V
Sbjct: 187 SKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRV 246
Query: 232 -TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T + +V Y+ G EEA + +EMA+ PD ++ ++A +
Sbjct: 247 DTYSFIVTGYIGMGKVEEAFAVMEEMADRD------------CAPDTISYTMFIEALYSI 294
Query: 291 KRWDDLELVYKRMLHHG 307
R ++ E V++ M+ G
Sbjct: 295 GRREEAEKVFETMVEKG 311
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/308 (20%), Positives = 126/308 (40%), Gaps = 31/308 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P VAY SI L + G I+E I MR + + Y+ ++
Sbjct: 209 PTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPR---------------VDTYSFIV 253
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + E AF V++++ + P +Y + +E + + G+ + F V+K
Sbjct: 254 TGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCK 313
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y ++++ +EG A + M++ + + +Y + + + EEAL
Sbjct: 314 PDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALEL 373
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM---KNFCSPNLVTCNIMVKAY 240
+I K P V+Y +I A + A + +M K P++VT ++++
Sbjct: 374 YQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGL 433
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ G+ E A L EM ++ VIPD +T+ +++ A + +
Sbjct: 434 GKVGMEERAFDLLAEMIDNG------------VIPDCFTYTSLIQTLAGAGKVSRAMELL 481
Query: 301 KRMLHHGL 308
+ ML G+
Sbjct: 482 EEMLKAGI 489
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 114/252 (45%), Gaps = 21/252 (8%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PDI+ Y+++++ + + + A ++ + +G P+A Y ++ + CG+ + E
Sbjct: 173 KPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGR---IQE 229
Query: 114 FFRKVQKSYIPNAL----AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
+ +Q+ Y +V GK +EA + +E+M R Y
Sbjct: 230 AVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIE 289
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSP 228
L S G+ EEA + + + KP + +Y +I G++ A ++ M K P
Sbjct: 290 ALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKP 349
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
N +++ +++ EEA++L+Q + +D ++P T+NT+++A
Sbjct: 350 NRYIYTMIMDGFVKSSRLEEALELYQRILKDG------------ILPSTVTYNTVINALC 397
Query: 289 AEKRWDD-LELV 299
K+ D+ LEL+
Sbjct: 398 KLKKMDEALELL 409
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 87/185 (47%), Gaps = 7/185 (3%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P+ +Y +++ V+ + E A + Q++ + G PS TY V+ + K +
Sbjct: 347 VKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEAL 406
Query: 113 EFFRKVQK---SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
E R++Q+ P+ + Y ++++ L + G + A + +M G++ Y L +
Sbjct: 407 ELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQ 466
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ--MKNFCS 227
L AGK A+ ++++ K P +Y L+Q S +AA+ Q M+N +
Sbjct: 467 TLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCRSD--VDAAWDLLQEMMRNGHT 524
Query: 228 PNLVT 232
PN T
Sbjct: 525 PNEFT 529
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/214 (18%), Positives = 90/214 (42%), Gaps = 20/214 (9%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL-- 181
PN ++ +L+ + + + +M+ RGI + A + + LC+ ++A+
Sbjct: 27 PNVSSFNILLRGFAARDDFEVVNALLREMKARGITSNGATHGVILSALCARRDLDKAVSY 86
Query: 182 --MQMDKICKV---ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNI 235
+ ++ C++ P V+YT ++ +GN + +M + C P L+T +
Sbjct: 87 FNSRTEEACRLFEAIEAPDSVTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTV 146
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
+V + E A +F+EM + PDI +++++D + R D+
Sbjct: 147 LVDGLCKAHKVERACDVFEEMIRKGHK------------PDIIAYSSLIDGLSKAGRVDE 194
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ M+ G A + ++ + G+++
Sbjct: 195 ARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQ 228
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 15/153 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P TV Y ++ L + +K++ + ++ +R + ++K LEP IV Y+ ++
Sbjct: 384 PSTVTYNTVINALCK---LKKMDEALELLREMQRRK----------EELEPSIVTYSMII 430
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + E AF +L ++ G P TY +++ + GK + E ++ K+ I
Sbjct: 431 HGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIF 490
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
P+ Y LV L R D A +++M R G
Sbjct: 491 PDDHTYGTLVQILCR-SDVDAAWDLLQEMMRNG 522
>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g16640, mitochondrial; Flags: Precursor
gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 126/281 (44%), Gaps = 14/281 (4%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK-YNLVYEFFRKVQ 119
N +LN R Q A L ++ + G +PS T+G ++ + Y+ +Y F + V
Sbjct: 120 NILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVG 179
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
Y PN + Y +++ L + + D A+ + ME+ GI Y L LCS+G+ +
Sbjct: 180 MGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSD 239
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A + + K P V ++ LI AC+ G + A + +M + P++VT ++++
Sbjct: 240 ATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIY 299
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ +EA ++F M KG PD+ T++ +++ K+ +
Sbjct: 300 GLCMYSRLDEAEEMFGFMVS-----------KG-CFPDVVTYSILINGYCKSKKVEHGMK 347
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
++ M G+ N + +I RAGK+ + E + +
Sbjct: 348 LFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMV 388
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 134/306 (43%), Gaps = 29/306 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ L +G + ++ M + PD+ +NA++
Sbjct: 219 PDVVTYNSLISGLCSSGRWSDATRMVSCMTK---------------REIYPDVFTFNALI 263
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKSYI 123
+ACV+ + A +++ ++ P TY L++ + + + E F V K
Sbjct: 264 DACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCF 323
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y +L+N + K + + +M +RG+V + Y L + C AGK A
Sbjct: 324 PDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEI 383
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ P +++Y L+ D+G I+ A I M KN ++VT NI+++ +
Sbjct: 384 FRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCK 443
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +A ++ + + +GL +PDI+T+ TM+ + + + ++++
Sbjct: 444 AGEVADAWDIYCSL-----------NCQGL-MPDIWTYTTMMLGLYKKGLRREADALFRK 491
Query: 303 MLHHGL 308
M G+
Sbjct: 492 MKEDGI 497
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 122/278 (43%), Gaps = 14/278 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP IV + ++LN R + A ++ Q+ G KP+ Y +++ + + + +
Sbjct: 148 EPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALD 207
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+++K I P+ + Y L++ L G+ +A V M +R I + L
Sbjct: 208 LLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACV 267
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
G+ EA +++ + + P +V+Y+ LI + A +F M C P++V
Sbjct: 268 KEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVV 327
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T +I++ Y + E MKLF EM++ V+ + T+ ++
Sbjct: 328 TYSILINGYCKSKKVEHGMKLFCEMSQRG------------VVRNTVTYTILIQGYCRAG 375
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + E +++RM+ G+H N + ++ GK+E
Sbjct: 376 KLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIE 413
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 122/277 (44%), Gaps = 14/277 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+P++V+YN +++ + KQ + A +L ++++ G P TY ++ + + G+++
Sbjct: 183 KPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATR 242
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ K I P+ + L++ +EG+ EA E+M RR + Y L LC
Sbjct: 243 MVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLC 302
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
+ +EA + P VV+Y+ LI S +++ +F +M + N V
Sbjct: 303 MYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTV 362
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T I+++ Y G A ++F+ M H P+I T+N +L
Sbjct: 363 TYTILIQGYCRAGKLNVAEEIFRRMVFCGVH------------PNIITYNVLLHGLCDNG 410
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+ + ++ M +G+ + + +I +AG+V
Sbjct: 411 KIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEV 447
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 111/251 (44%), Gaps = 14/251 (5%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
Y +L +R + + + + + Q PS + ++ + KY++V + ++Q
Sbjct: 49 YREMLRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQ 108
Query: 120 KSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
IP N +L+N R + A+S + M + G S + L C +
Sbjct: 109 MLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVY 168
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMV 237
+AL D++ + KP VV Y +I S + NA + N+M K+ P++VT N ++
Sbjct: 169 DALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLI 228
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
G + +A ++ M + RE + PD++TFN ++DAC E R + E
Sbjct: 229 SGLCSSGRWSDATRMVSCMTK------RE------IYPDVFTFNALIDACVKEGRVSEAE 276
Query: 298 LVYKRMLHHGL 308
Y+ M+ L
Sbjct: 277 EFYEEMIRRSL 287
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P+I+ YN +L+ + E A +L +++ G TY +++ M G+ +
Sbjct: 392 VHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAW 451
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ + + + +P+ Y ++ L+++G EA + M+ GI+
Sbjct: 452 DIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGIL 498
>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
Length = 896
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/324 (22%), Positives = 139/324 (42%), Gaps = 28/324 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y S+ L +AG + E ++ M + R P YN ++
Sbjct: 285 PDDVSYTSMIWVLCKAGRLSEAEELFGQMET---------------ERAVPCAYAYNTMI 329
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
Q+E A+ +L QLK++G PS ++ ++ + K + F ++K P
Sbjct: 330 MGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDAEP 389
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N+ Y ++++ L GK +EA ++ME G+ + + LC A K E A
Sbjct: 390 NSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMF 449
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQMKNFCSPNLVTCNIMVKAYLEH 243
+ + P V+Y LI GN+ +A +F N + + N V +++ + H
Sbjct: 450 ETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMH 509
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G E+ K+F+EM +++G PD+ NT +D + +++ +
Sbjct: 510 GRKEDGHKIFKEM-----------NRRG-CQPDLTLLNTYMDCVFKAGDVEKGRAIFEDI 557
Query: 304 LHHGLHFNAKRHLRMILDASRAGK 327
+G + + + +I ++AG+
Sbjct: 558 KGYGFLPDVRSYSILIHGLTKAGQ 581
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 132/279 (47%), Gaps = 15/279 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
LEPDIV+YN ++ + + A+ +LK QG KP +Y ++ V+ G+ +
Sbjct: 248 LEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAE 307
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F +++ + +P A AY ++ G+ + A ++ ++ RG + S + + CL
Sbjct: 308 ELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCL 367
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
K +EAL + + K A +P +Y +I +G ++ A I ++M++ PNL
Sbjct: 368 GKKRKVDEALTLFEAMKKDA-EPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNL 426
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T NIMV + FE A ++F+ ++ + P+ T+ +++D +
Sbjct: 427 LTVNIMVDRLCKAKKFEPAYEMFETASQRGCN------------PNSVTYCSLIDGLGKK 474
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
DD +++ ML G + N + +I + G+ E
Sbjct: 475 GNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKE 513
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/346 (20%), Positives = 145/346 (41%), Gaps = 34/346 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
P++V Y S+ LG+ G++ + + + ++M SL + F G E
Sbjct: 459 PNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKI 518
Query: 53 L--------EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+PD+ + N ++ + E + + +K G P +Y +++ +
Sbjct: 519 FKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTK 578
Query: 105 CGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ F + Q+ + +A AY +V+ + GK D+A +E+M+ + + + A
Sbjct: 579 AGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVAT 638
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-M 222
Y + L + +EA M ++ + V+ Y+ LI G I A I + M
Sbjct: 639 YGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMM 698
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
K +PN+ T N ++ A ++ EA+ FQ M E P+ YT++
Sbjct: 699 KKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCS------------PNTYTYSI 746
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+++ ++++ + ++ M GL N + MI ++ G +
Sbjct: 747 LINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNI 792
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/351 (20%), Positives = 147/351 (41%), Gaps = 29/351 (8%)
Query: 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACV 68
A+ + V +G ++ ++ +R + + ++ G + ++ ++ A
Sbjct: 181 AFSAYTVLIGAMAEARQPERALELLRQMQEVGYEVG------------VPLFTTLVRALA 228
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNAL 127
R + EGA ++ ++K +P Y + ++ G ++ ++FF +++ + P+ +
Sbjct: 229 REGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDV 288
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
+Y ++ L + G+ EA ME V A Y + SAG+ E A +D++
Sbjct: 289 SYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQL 348
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFE 247
+ P VVS+ ++ + A +F MK PN T NI++ G E
Sbjct: 349 KERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDAEPNSSTYNIIIDMLCMAGKVE 408
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
EA + EM + GL P++ T N M+D K+++ +++ G
Sbjct: 409 EAYMIRDEM-----------EHAGL-FPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRG 456
Query: 308 LHFNAKRHLRMILDASRAGKVE----LLEITWEHLARADRITPPALIKERF 354
+ N+ + +I + G V+ L E + A+ + +LI+ F
Sbjct: 457 CNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFF 507
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 126/298 (42%), Gaps = 18/298 (6%)
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-S 121
+++A VR ++ + A V+ +++ +P+ + Y +++ M + E R++Q+
Sbjct: 153 LVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQEVG 212
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
Y + LV L REG+ + A++ V++++ + LY C AG + A
Sbjct: 213 YEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAW 272
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAY 240
++ KP VSYT +I +G + A +F QM+ P N M+ Y
Sbjct: 273 KFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGY 332
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
G FE A KL ++ E IP + +FN++L C +KR D L
Sbjct: 333 GSAGQFENAYKLLDQLKERG------------CIPSVVSFNSIL-TCLGKKRKVDEALTL 379
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVE---LLEITWEHLARADRITPPALIKERFC 355
+ N+ + +I AGKVE ++ EH + ++ +R C
Sbjct: 380 FEAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLC 437
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 125/297 (42%), Gaps = 52/297 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +Y + L +AG +E + +M+ ++ F D YNAV+
Sbjct: 564 PDVRSYSILIHGLTKAGQARETSSIFHAMK---QQGFAL------------DARAYNAVV 608
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + + + A+ VL+++K + P+ TYG +++ + + + Y F + + I
Sbjct: 609 DGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIE 668
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM- 182
N + Y L++ + G+ DEA +E+M ++G+ + + L L A + EAL+
Sbjct: 669 LNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALIC 728
Query: 183 ------------------QMDKICKVA--NK--------------PLVVSYTGLIQACLD 208
++ +C+V NK P VV+YT +I
Sbjct: 729 FQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAK 788
Query: 209 SGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
GNI +A +F + K N +P+ + N +++ EA +F+E IN
Sbjct: 789 VGNITDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRLKGCRIN 845
>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 864
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 124/295 (42%), Gaps = 14/295 (4%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ V Y+ +++ + E AF + Q+ ++G +PS TY ++++ + G + +
Sbjct: 264 PNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNL 323
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F + + + PN Y VL++ L R+GK +EA M + GI S Y L C
Sbjct: 324 FDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCK 383
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+ A + + K A KP V ++ L++ G A ++ +M N SP++V+
Sbjct: 384 DGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVS 443
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N+++ G A KL M N + E PD TF +++A + +
Sbjct: 444 YNVLIDGLCREGHMNVAYKLLTSM----NSFDLE--------PDCLTFTAIINAFCKQGK 491
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPP 347
D ML G+ + +I GK E L + +T P
Sbjct: 492 ADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTP 546
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 147/354 (41%), Gaps = 47/354 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P++V+Y + L + G ++E F + D M + +P Y ++
Sbjct: 264 PNSVSYSILIHGLCEVGRLEEAFGLKDQM---------------GEKGCQPSTRTYTVLI 308
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
A R + AF + ++ +G KP+ TY ++++ + GK RK+ K I
Sbjct: 309 KALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIF 368
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L+N ++G+ A + ME+R + + +L LC GK +A+
Sbjct: 369 PSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHL 428
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ ++ P +VSY LI G++ A + M +F P+ +T ++ A+ +
Sbjct: 429 LKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCK 488
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDL----E 297
G + A M +KG+ + ++ T T++D C K D L
Sbjct: 489 QGKADVASAFLGLML-----------RKGISLDEV-TGTTLIDGVCNVGKTRDALFILET 536
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDA-SRAGKVELLEITWEHLARADRITPPALI 350
LV RML L +ILD S+ K++ E LA +I L+
Sbjct: 537 LVKMRML------TTPHSLNVILDMLSKGCKLK------EELAMLGKINKLGLV 578
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 5/230 (2%)
Query: 49 WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY 108
D L PDIV YN +++ R A+ +L + +P T+ ++ GK
Sbjct: 433 LDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKA 492
Query: 109 NLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
++ F + + I + + L++ + GKT +A+ +E + + ++ + +
Sbjct: 493 DVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVI 552
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFC 226
L K +E L + KI K+ P VV+YT L+ + SG+I + + MK + C
Sbjct: 553 LDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGC 612
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS---NHINREYDKKGLV 273
PN+ I++ + G EEA KL M + NH+ KG V
Sbjct: 613 LPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYV 662
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 117/264 (44%), Gaps = 21/264 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y + L + GH+ + ++ SM S LEPD + + A++
Sbjct: 439 PDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFD---------------LEPDCLTFTAII 483
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN---LVYEFFRKVQKS 121
NA ++ + + A L + ++G T +++ + GK + E K++
Sbjct: 484 NAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRML 543
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
P++L V+++ L + K E ++ + + + G+V S Y L L +G +
Sbjct: 544 TTPHSL--NVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSF 601
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAY 240
++ + P V YT +I G ++ A + + M++ SPN VT +MVK Y
Sbjct: 602 RMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGY 661
Query: 241 LEHGLFEEAMKLFQEMAEDSNHIN 264
+ +G + A++ + M E +N
Sbjct: 662 VNNGKLDRALETVRAMVERGYELN 685
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P +V Y +++ +R G+F +L+ +K G P+ Y +++ + G+
Sbjct: 577 LVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAE 636
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
+ +Q S + PN + Y V+V GK D A+ V M RG + +Y L R
Sbjct: 637 KLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLR 694
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 70/180 (38%), Gaps = 14/180 (7%)
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
ME G V Y + LC G E A M M KI KV T L+ N
Sbjct: 186 MEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSLLLGFCRGLN 245
Query: 212 IQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
+++A +F+ M + C+PN V+ +I++ E G EEA L +M E
Sbjct: 246 LRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQ------- 298
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
P T+ ++ A D ++ M+ G N + +I R GK+E
Sbjct: 299 -----PSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIE 353
>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Vitis vinifera]
Length = 755
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 133/302 (44%), Gaps = 18/302 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDIV YN++++ + + + +Q+K P TY ++ + +EF
Sbjct: 288 PDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEF 347
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++ + + PN + Y ++ +EG EA+ DM R + + Y L C
Sbjct: 348 LHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCK 407
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
AG EAL +++I + K VV+YT L+ + G ++ A +F M N +PN T
Sbjct: 408 AGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQET 467
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+V +++ E A + +EM E + PD+ + T+L E R
Sbjct: 468 YTALVHGFIKAKEMEYAKDILKEMKEKC------------IKPDLLLYGTILWGLCNESR 515
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEITWEHLARADRITPPA 348
++ +L+ + G++ NA + ++ ++G+ + LLE + A +T A
Sbjct: 516 LEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCA 575
Query: 349 LI 350
LI
Sbjct: 576 LI 577
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 80/342 (23%), Positives = 140/342 (40%), Gaps = 32/342 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ G+ G + E + + M+ D +PD++ YNA++
Sbjct: 288 PDIVTYNSLIDGHGKLGLLDECICIFEQMK---------------DADCDPDVITYNALI 332
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
N + ++ AF L ++K G KP+ TY ++ G +FF +++ +
Sbjct: 333 NCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALT 392
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y L++ + G EA+ VE++ + GI + Y L LC G+ +EA
Sbjct: 393 PNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEV 452
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLE 242
+ P +YT L+ + + ++ A I +MK C P+L+ ++
Sbjct: 453 FRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCN 512
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
EEA L E+ E + N IYT T++DA + + + +
Sbjct: 513 ESRLEEAKLLIGEIKESGINTN----------AVIYT--TLMDAYFKSGQATEALTLLEE 560
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI 344
ML GL + +I ++G L++ H R I
Sbjct: 561 MLDLGLIATEVTYCALIDGLCKSG---LVQEAMHHFGRMSEI 599
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 121/255 (47%), Gaps = 17/255 (6%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+ V Y ++ L + G +KE +V +M + + P+ Y A+++
Sbjct: 429 NVVTYTALLDGLCEEGRMKEAEEVFRAM---------------LNAGVAPNQETYTALVH 473
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
++ K+ E A +L+++K++ KP YG ++ + + ++++S I
Sbjct: 474 GFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINT 533
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
NA+ Y L++ ++ G+ EA++ +E+M G++ + Y L LC +G +EA+
Sbjct: 534 NAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHF 593
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEH 243
++ ++ +P V YT L+ + + A +F++M + P+ + ++ ++H
Sbjct: 594 GRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKH 653
Query: 244 GLFEEAMKLFQEMAE 258
G +EA+ L M E
Sbjct: 654 GNLQEALNLRDRMIE 668
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 122/280 (43%), Gaps = 14/280 (5%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R+ P NA+L+ + + + + + + G K S TY ++++ + G +
Sbjct: 215 RVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMA 274
Query: 112 YEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
F +++++ + P+ + Y L++ + G DE + E M+ Y L C
Sbjct: 275 RSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINC 334
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPN 229
C + +A + ++ KP VV+Y+ I A G +Q A F M+ +PN
Sbjct: 335 FCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPN 394
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
T ++ A + G EA+KL +E+ + +N + T+ +LD
Sbjct: 395 EFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLN------------VVTYTALLDGLCE 442
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
E R + E V++ ML+ G+ N + + ++ +A ++E
Sbjct: 443 EGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEME 482
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 94/208 (45%), Gaps = 2/208 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN-LV 111
+ + V+Y +++A + Q A +L+++ G + TY +++ + G +
Sbjct: 531 INTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAM 590
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F R + PN Y LV+ L + + A ++M +G++ Y L
Sbjct: 591 HHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGN 650
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
G +EAL D++ ++ + + +YT LI SG +Q A + ++M P+
Sbjct: 651 MKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDE 710
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
V ++K Y G +EA++L EMA+
Sbjct: 711 VVYMCLIKKYYALGKVDEALELQNEMAK 738
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/353 (21%), Positives = 139/353 (39%), Gaps = 21/353 (5%)
Query: 61 NAVLNA--CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
NAVL C+RR + L + P + + ++ G E F K+
Sbjct: 152 NAVLKELICLRRVLPSWDVFDLLWATRNVCVPGFGVFDALFSALIELGMLEEASECFLKM 211
Query: 119 QKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+K + P + L++ L + G+ D + +DM GI S Y + LC G
Sbjct: 212 RKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDL 271
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIM 236
E A ++ + P +V+Y LI G + IF QMK+ C P+++T N +
Sbjct: 272 EMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNAL 331
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ + + +A + EM K + P++ T++T +DA E +
Sbjct: 332 INCFCKFERMPKAFEFLHEM------------KANGLKPNVVTYSTFIDAFCKEGMLQEA 379
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHL---ARADRITPPALIKE 352
+ M L N + +I +AG + E L++ E L + + +T AL+ +
Sbjct: 380 IKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALL-D 438
Query: 353 RFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQL 405
C K+ +++ V+ + E F K + +D L ++
Sbjct: 439 GLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEM 491
>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
Length = 578
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 123/279 (44%), Gaps = 21/279 (7%)
Query: 36 LPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY 95
L +K F++ L R R+ PDI +N V++ R Q A V + +K G PS TY
Sbjct: 174 LAEKAFRS-ALRR---RVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATY 229
Query: 96 GLVMEVMLACGKYNLVYE----FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVED 151
+++ G +Y V+ P A+ + VL+N + T AV E+
Sbjct: 230 NSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEE 289
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
M+++GI S Y L LCS GK EE + M+++ + P +++ +++ G
Sbjct: 290 MKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGM 349
Query: 212 IQNAA-YIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270
+ +A +I + P++V I++ Y G E+AM + + MA KK
Sbjct: 350 MADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMA-----------KK 398
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH 309
G + P++ T+N ++ + W + M G+
Sbjct: 399 G-ISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIE 436
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 120/281 (42%), Gaps = 26/281 (9%)
Query: 7 TVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNA 66
V Y S+ L G ++E +++ M L L P+ + + VL
Sbjct: 299 VVTYNSLISGLCSEGKVEEGVKLMEEMEDLG---------------LSPNEITFGCVLKG 343
Query: 67 CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PN 125
++ A + + ++ +P Y ++++ GK + K I PN
Sbjct: 344 FCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPN 403
Query: 126 ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMD 185
Y L+ R G A +++M+ +GI Y L LC G+ +A+ +D
Sbjct: 404 VTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLD 463
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC--SPNLVTCNIMVKAYLEH 243
++ +V +P ++Y +IQ D GNI++A I +M+ C N+VT N+ +K + +
Sbjct: 464 EMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEK-CRKRANVVTYNVFIKYFCQI 522
Query: 244 GLFEEAMKLFQEMAED---SNHINREYDKKGLV----IPDI 277
G +EA L EM + N I E K+G++ PDI
Sbjct: 523 GKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKGYTPDI 563
>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 465
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 114/236 (48%), Gaps = 5/236 (2%)
Query: 29 VIDSMRSLPKKKFKTGTLERWDPRL-EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG 87
+ID + + + + L R D +L +P++V+Y+ +++ + K AF + ++ +G
Sbjct: 198 LIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKG 257
Query: 88 QKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAV 146
P+ TY ++ GK + F K + ++ P+ + +LV+ + GK A+
Sbjct: 258 ISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVDVFCKSGKISYAL 317
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
V++M RG + Y + LC + ++A+ + K+ +P + +YT LI
Sbjct: 318 KLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGL 377
Query: 207 LDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
SG +++A IF + K + +VT +M + + GLF+EA L +M E+
Sbjct: 378 CTSGKLEDARNIFEDLLVKGY-DITVVTYIVMFYGFCKKGLFDEASALLSKMEENG 432
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/330 (21%), Positives = 134/330 (40%), Gaps = 51/330 (15%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
L R +P P + +N +L + V+ K + ++ ++++ +G KP+ +++
Sbjct: 78 LLRQNP--TPPAIEFNKILGSLVKSKHYHTVLYLSKKMEFRGIKPNLVNCNILINCFCQL 135
Query: 106 GKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G + F K+ K Y PN + + L+ L +G+ +A++ + + G + Y
Sbjct: 136 GLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVALGFQFNQISY 195
Query: 165 YDLARCLCSAGKCEEAL-------------------MQMDKICKVAN------------- 192
L LC G+ AL +D +CK +
Sbjct: 196 GTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVS 255
Query: 193 ---KPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEE 248
P VV+Y+ LI G +++A +FN+M P++ T NI+V + + G
Sbjct: 256 KGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVDVFCKSGKISY 315
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
A+KL EM + P+I T++++LDA R D + ++ G+
Sbjct: 316 ALKLVDEMHDRGQP------------PNIVTYSSILDALCKTHRVDKAVALLTKLKDQGI 363
Query: 309 HFNAKRHLRMILDASRAGKVELLEITWEHL 338
N + +I +GK+E +E L
Sbjct: 364 RPNMHTYTILIDGLCTSGKLEDARNIFEDL 393
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 114/253 (45%), Gaps = 17/253 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y +I + + H+ + FD+ M S + P++V Y+A++
Sbjct: 225 PNVVMYSTIIDGMCKDKHVNDAFDLYSEMVS---------------KGISPNVVTYSALI 269
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ + + A + ++ + KP T+ ++++V GK + + ++ +
Sbjct: 270 SGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQP 329
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y +++ L + + D+AV+ + ++ +GI + Y L LC++GK E+A
Sbjct: 330 PNIVTYSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNI 389
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + VV+Y + G A+ + ++M +N C P+ T ++ + +
Sbjct: 390 FEDLLVKGYDITVVTYIVMFYGFCKKGLFDEASALLSKMEENGCIPDAKTYELIKLSLFK 449
Query: 243 HGLFEEAMKLFQE 255
G + A KL +E
Sbjct: 450 KGENDMAEKLHRE 462
>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
Length = 850
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/334 (21%), Positives = 144/334 (43%), Gaps = 42/334 (12%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD V Y ++ + G ++E F+++DSM L+P + YNA+
Sbjct: 390 FPDVVTYNTLINAYCRQGLLEEAFELMDSMSG---------------KGLKPCVFTYNAI 434
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE---FFRKVQK 120
+N + ++ A VL ++ + G P TY +++ + C N++ F +
Sbjct: 435 INGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL--VECCRNDNMMDAERIFDEMPSQ 492
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+P+ +++ L+ L + G D+A+ DM+ G+ +Y L C G EA
Sbjct: 493 GVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEA 552
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
L D++ + VV+Y ++ + A +F +M + P+ T ++
Sbjct: 553 LKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLING 612
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKR------ 292
Y + G +A+ LF+ M + + + PD+ T+NT++D C +
Sbjct: 613 YXKDGNMNKAVTLFEMMIQRN------------LKPDVVTYNTLIDGFCKGSEMEKVNEL 660
Query: 293 WDDL--ELVYKRMLHHGLHFNAKRHLRMILDASR 324
W+D+ +Y + +G+ N ++ + +A R
Sbjct: 661 WNDMISRRIYPNHISYGILINGYCNMGCVSEAFR 694
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 131/310 (42%), Gaps = 23/310 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY---NLV 111
PD+V YN ++NA R+ E AF ++ + +G KP TY ++ + GKY V
Sbjct: 391 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 450
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ K+ S P+ Y +L+ R +A ++M +G+V + L L
Sbjct: 451 LDEMLKIGMS--PDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLL 508
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
G ++AL + P V YT LI +G + A + ++M + C ++
Sbjct: 509 SKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDV 568
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N ++ + + EA +LF EM E V PD YTF T+++ +
Sbjct: 569 VTYNTILNGLCKEKMLSEADELFTEMTERG------------VFPDFYTFTTLINGYXKD 616
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPP--- 347
+ +++ M+ L + + +I + ++E + W + + RI P
Sbjct: 617 GNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMI-SRRIYPNHIS 675
Query: 348 -ALIKERFCN 356
++ +CN
Sbjct: 676 YGILINGYCN 685
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/325 (20%), Positives = 140/325 (43%), Gaps = 32/325 (9%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ- 119
N++L V+ + A+ + Q++ + G + + T +++ + K F ++
Sbjct: 327 NSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEE 386
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K P+ + Y L+N R+G +EA ++ M +G+ Y + LC GK
Sbjct: 387 KGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLR 446
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A +D++ K+ P +Y L+ C + N+ +A IF++M P+LV+ + ++
Sbjct: 447 AKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIG 506
Query: 239 AYLEHGLFEEAMKLFQEMA------------------------EDSNHINREYDKKGLVI 274
++G ++A+K F++M ++ + E ++G +
Sbjct: 507 LLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXL 566
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VEL 330
D+ T+NT+L+ EK + + ++ M G+ + +I + G V L
Sbjct: 567 -DVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTL 625
Query: 331 LEITWEHLARADRITPPALIKERFC 355
E+ + + D +T LI + FC
Sbjct: 626 FEMMIQRNLKPDVVTYNTLI-DGFC 649
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/219 (19%), Positives = 90/219 (41%), Gaps = 16/219 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ + ++++ ++ + M S R+ P+ + Y ++
Sbjct: 636 PDVVTYNTLIDGFCKGSEMEKVNELWNDMIS---------------RRIYPNHISYGILI 680
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N AF + ++ ++G + + T +++ G EF + K +
Sbjct: 681 NGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIV 740
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L+N +E D A + V ME G++ Y + G+ +EA +
Sbjct: 741 PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 800
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
M K+ + P +YT LI + N++ A + ++M
Sbjct: 801 MLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEM 839
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 70/176 (39%), Gaps = 21/176 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDP 51
YP+ ++Y + G + E F + D M ++ K + G + D
Sbjct: 670 YPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADE 729
Query: 52 RLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
L PD + YN ++N ++ + + AF ++ +++ G P TY +++
Sbjct: 730 FLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFS 789
Query: 104 ACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
G+ K +++ P+ Y L+N + EA ++M +RG V
Sbjct: 790 RQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFV 845
>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
Length = 495
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 138/305 (45%), Gaps = 32/305 (10%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+I Y VL + + A +LQ ++ + P+ +++ + GK + YE
Sbjct: 70 PNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYEL 129
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
++++ + ++Y +L L + + D A++ +ME +V S Y L C A
Sbjct: 130 YKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRA 189
Query: 175 GKCEEALMQMDKICKVANKPLVV----SYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
G+ E+A+ ++++ + VV SY +I + + A Y+ +M K+ CSPN
Sbjct: 190 GRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPN 249
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAED-------------SNH-----INREYD--- 268
+VT N ++ G +EA +F+ M E + H I++ D
Sbjct: 250 VVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFV 309
Query: 269 ---KKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASR 324
++G V P++YT+ ++ C A K D LE++ KRM G N + R+I +
Sbjct: 310 DMLRRG-VEPNVYTYTALIGGLCDANKVEDALEIL-KRMSSTGREPNVVTYTRVIGALCK 367
Query: 325 AGKVE 329
G++E
Sbjct: 368 GGQIE 372
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 117/266 (43%), Gaps = 21/266 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY---NLV 111
PD+ YN V++ + +Q A +VL+++ + G P+ T+ +++ + GK N +
Sbjct: 213 PDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAM 272
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+E+ V+++ P A+ Y VL+ R + D+A DM RRG+ + Y L L
Sbjct: 273 FEYM--VERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGL 330
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF----CS 227
C A K E+AL + ++ +P VV+YT +I A G I+ A +FN C
Sbjct: 331 CDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCK 390
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P+ + ++ F EA + F M E K + P IY M D
Sbjct: 391 PDSYAYSTIIYWLCRQSKFLEAYEYFLRMVES----------KLVAKPHIY--KAMADGL 438
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAK 313
+ + +E V HG+ K
Sbjct: 439 ELVQETEKVERVCLEASAHGIELQQK 464
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/284 (17%), Positives = 109/284 (38%), Gaps = 65/284 (22%)
Query: 84 KQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKT 142
+Q+ + + TY + ++ G + + F + K +PN Y +++ L + KT
Sbjct: 29 RQEDFEHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKT 88
Query: 143 DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGL 202
D A+ ++DME + + + + L CLC GK
Sbjct: 89 DAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKV------------------------- 123
Query: 203 IQACLDSGNIQNAAY-IFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS- 260
+AAY ++ ++ + CS + ++ N++ + + A+ +F EM E++
Sbjct: 124 -----------DAAYELYKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAV 172
Query: 261 -------NHINREYDKKGL-------------------VIPDIYTFNTMLDACAAEKRWD 294
N + Y + G V+PD+Y++NT++ ++
Sbjct: 173 VPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLP 232
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
V +RM+ G N ++ GK++ +E++
Sbjct: 233 TARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYM 276
>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 719
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 121/257 (47%), Gaps = 14/257 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D+V YN +L+ +RK A + ++ ++G P + T ++++ G E F
Sbjct: 434 DVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELF 493
Query: 116 RKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+K+++ I + + Y L++ + G D A DM + I+ + + L LCS
Sbjct: 494 KKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSK 553
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVT 232
G EA D++ + KP V+ +I+ SGN + +M + F P+ ++
Sbjct: 554 GHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFV-PDCIS 612
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ +++ +A L ++M E K+G ++PD++T+N++L E +
Sbjct: 613 YNTLIYGFVKEENMSKAFGLVKKMEE----------KQGGLVPDVFTYNSILHGFCRENQ 662
Query: 293 WDDLELVYKRMLHHGLH 309
+ E V ++M+ G++
Sbjct: 663 MKEAEAVLRKMIERGVN 679
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 108/269 (40%), Gaps = 15/269 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
++ N ++NA + + E L +++++G P TY ++ + G +E
Sbjct: 224 NVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELM 283
Query: 116 RKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ K + P Y ++N L + GK + A +M R G+ + Y L C
Sbjct: 284 HAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKK 343
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
G E + P +V ++ ++ SGN+ A FN +K P+ V
Sbjct: 344 GDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIY 403
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
I+++ Y G+ EAM L EM + + D+ T+NT+L K
Sbjct: 404 TILIQGYCRKGMISEAMNLRNEMLQQGCAM------------DVVTYNTILHGLCKRKML 451
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDA 322
+ + ++ M GL F L +++D
Sbjct: 452 GEADKLFNEMTERGL-FPDSYTLTILIDG 479
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 79/372 (21%), Positives = 150/372 (40%), Gaps = 64/372 (17%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD V Y ++ G ++E F++ M ++P K F P + YN V
Sbjct: 257 YPDIVTYNTLISAYSSQGLMEEAFEL---MHAMPSKGF------------SPGVYTYNTV 301
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-GLVMEVM-------------------- 102
+N + ++E A V ++ + G P +TTY L+ME
Sbjct: 302 INGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDV 361
Query: 103 ---LAC-----------GKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVS 147
L C G + +F V+++ IP+ + Y +L+ R+G EA++
Sbjct: 362 VPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMN 421
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
+M ++G Y + LC EA +++ + P + T LI
Sbjct: 422 LRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHC 481
Query: 208 DSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
GN+QNA +F +MK ++VT N ++ + + G + A +++ +M +++E
Sbjct: 482 KLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADM------VSKE 535
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
++P +F+ +++A ++ + V+ M+ + MI R+G
Sbjct: 536 ------ILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSG 589
Query: 327 KVELLEITWEHL 338
EI E +
Sbjct: 590 NASDGEIFLEKM 601
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/252 (19%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
V++ ++ V+ ++ A+ L+ +G S ++ ++ G L + ++++
Sbjct: 157 VFDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEI 216
Query: 119 QKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+S + N ++VN L ++GK ++ + + +++ +G+ Y L S G
Sbjct: 217 SRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLM 276
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIM 236
EEA M + P V +Y +I G + A +F +M ++ SP+ T +
Sbjct: 277 EEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSL 336
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ + G E +F +M R D V+PD+ F++M+ D
Sbjct: 337 LMEACKKGDAVETENIFSDM--------RSRD----VVPDLVCFSSMMSLFTRSGNLDKA 384
Query: 297 ELVYKRMLHHGL 308
+ + + GL
Sbjct: 385 LMYFNSVKEAGL 396
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 75/195 (38%), Gaps = 22/195 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P +++ + L GH+ E F V D M S ++P +++ N+++
Sbjct: 538 PTPISFSILVNALCSKGHLSEAFRVWDEMIS---------------KSIKPTVMICNSMI 582
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNLVYEFFRKVQ 119
R L+++ +G P +Y G V E ++ + LV + K Q
Sbjct: 583 KGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMS-KAFGLVKKMEEK-Q 640
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+P+ Y +++ RE + EA + + M RG+ + Y L S E
Sbjct: 641 GGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTE 700
Query: 180 ALMQMDKICKVANKP 194
A D++ + P
Sbjct: 701 AFRFHDEMLQRGFSP 715
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 76/183 (41%), Gaps = 30/183 (16%)
Query: 126 ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV----------------GSAALYYDL-A 168
+L+ +++ L R G+ +A S V M RR V GS +DL
Sbjct: 103 SLSLSAMIHILVRSGRLSDAQSCVLRMIRRSGVSRVEIVNSLVSTYSNCGSNDSVFDLLI 162
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
R A K EA + + + LI + + G ++ A I+ ++ ++
Sbjct: 163 RTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGVG 222
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
N+ T NIMV A + G E+ E+ E KG V PDI T+NT++ A
Sbjct: 223 VNVYTLNIMVNALCKDGKMEKVGTFLSEVQE-----------KG-VYPDIVTYNTLISAY 270
Query: 288 AAE 290
+++
Sbjct: 271 SSQ 273
>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Glycine max]
Length = 703
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 114/261 (43%), Gaps = 27/261 (10%)
Query: 6 DTVAYRSIAVTLGQAGHI---KELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNA 62
D Y S+ G I +ELFD E ++ P++V Y+
Sbjct: 219 DVFVYSSLISAFCGEGDIETGRELFD------------------EMLRRKVSPNVVTYSC 260
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKS 121
++ R +W A +L+ + +G +P Y ++ + + G+ + VQK
Sbjct: 261 LMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKG 320
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
P L Y V+VN L +E + D+A VE M ++G A Y L + LC AGK EA
Sbjct: 321 EEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEA- 379
Query: 182 MQMDKIC---KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
M + K+ K KP V + LIQ G + +AA I + M N+VT N ++
Sbjct: 380 MDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLI 439
Query: 238 KAYLEHGLFEEAMKLFQEMAE 258
+ YL EA+KL++ E
Sbjct: 440 EGYLAARKLIEALKLWKYAVE 460
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 120/295 (40%), Gaps = 48/295 (16%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYN---- 109
PD V YN ++N + K+ A + + +K+ G +P+ TY ++++ G+
Sbjct: 147 PDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLG 206
Query: 110 --------------LVY-----------------EFFRKVQKSYI-PNALAYKVLVNTLW 137
VY E F ++ + + PN + Y L+ L
Sbjct: 207 LLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLG 266
Query: 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV 197
R G+ EA ++DM RG+ Y LA LC G+ +A+ +D + + +P +
Sbjct: 267 RTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTL 326
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+Y ++ + +A + M K P+ VT N ++K G EAM L++ +
Sbjct: 327 TYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLL 386
Query: 257 AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
+ H+ PD++T N ++ E R D ++ M+ GL N
Sbjct: 387 LSEKFHVK----------PDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGN 431
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 75/342 (21%), Positives = 148/342 (43%), Gaps = 66/342 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD VAY +A L + G + V+D M +++ + EP + YN V+
Sbjct: 288 PDVVAYTVLADGLCKNGRAGDAIKVLDLM------------VQKGE---EPGTLTYNVVV 332
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV--QKSY 122
N + + + AF V++ + ++G+KP A TY +++ + GK + + ++ + +K +
Sbjct: 333 NGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFH 392
Query: 123 I-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+ P+ L+ L +EG+ +A M G+ G+ Y L +A K EAL
Sbjct: 393 VKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEAL 452
Query: 182 ---------------------------MQMDKI-----CKVAN---KPLVVSYTGLIQAC 206
MQM + CK+ + +P V+ Y L+ +
Sbjct: 453 KLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSL 512
Query: 207 LDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
+++ A +F +M+N + ++V+ NI++ L+ G + A +L EM
Sbjct: 513 CREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMD----- 567
Query: 266 EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
++PD TF+ +++ + D+ +Y++M+ G
Sbjct: 568 -------LVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCG 602
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 113/283 (39%), Gaps = 17/283 (6%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQ--KPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
N VL R Q + A + Q+K+ P TY ++ + F +
Sbjct: 116 NLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAM 175
Query: 119 QKS--YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
+K PN + Y VL++ + G+ E + +E+MER G+ +Y L C G
Sbjct: 176 KKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGD 235
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNI 235
E D++ + P VV+Y+ L+Q +G + A+ + M P++V +
Sbjct: 236 IETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTV 295
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
+ ++G +A+K+ M + P T+N +++ E R DD
Sbjct: 296 LADGLCKNGRAGDAIKVLDLMVQKGEE------------PGTLTYNVVVNGLCKEDRMDD 343
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
V + M+ G +A + ++ AGK+ W+ L
Sbjct: 344 AFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLL 386
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 73/161 (45%), Gaps = 6/161 (3%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D + P ++ YNA++ + R E A + Q+++ ++ ++++ L G
Sbjct: 495 DSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVK 554
Query: 110 LVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
E ++ +P+A+ + +L+N + G DEA+ E M G V ++ L
Sbjct: 555 SAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLL 614
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVS--YTGLIQACL 207
+ G+ E+ + + ++ A+K +V+ T I ACL
Sbjct: 615 KGYGLKGETEKIISLLHQM---ADKDVVLDSKLTSTILACL 652
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/118 (18%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D+V +N +++ ++ + A +L ++ P A T+ +++ G + +
Sbjct: 536 DVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLY 595
Query: 116 RK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
K V ++P + + L+ +G+T++ +S + M + +V + L + CLC
Sbjct: 596 EKMVSCGHVPGVVVFDSLLKGYGLKGETEKIISLLHQMADKDVVLDSKLTSTILACLC 653
>gi|255660976|gb|ACU25657.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 376
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 137/284 (48%), Gaps = 17/284 (5%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ ++ PD VVYN +LN R + + F + + + +G + S +++ +M + GK +
Sbjct: 18 ESKVSPDAVVYNIMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNTMMRGLFDNGKVD 76
Query: 110 LVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
V + + +S ++ ++ Y +LV+ + G D+++ +E E++G V A Y +
Sbjct: 77 EVISIWELMNESGFVEDSRTYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMI 136
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CS 227
LC + A+ ++ + K KP V Y LI + + ++A +F +M CS
Sbjct: 137 NGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCS 196
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA- 286
P ++T N ++ + ++ +F EA L +E+ + KGL P + T++ +++
Sbjct: 197 PTIITYNTLINGFCKNKMFGEAYNLVKELLD-----------KGLD-PGVITYSMLMEGL 244
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
C K L+L + ++ G + + H +I GK++L
Sbjct: 245 CLDHKVARALQL-WNQVTSKGFKPDVQMHNILIRGLCSVGKMQL 287
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 101/236 (42%), Gaps = 13/236 (5%)
Query: 74 EGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLV 133
+GA V +++ + P A Y +++ K +E + + + ++ ++
Sbjct: 7 DGAERVYKEIVESKVSPDAVVYNIMLNGYFRVAKIKDCFELWEMMGSEGNRSVSSFNTMM 66
Query: 134 NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANK 193
L+ GK DE +S E M G V + Y L C G +++L ++ +
Sbjct: 67 RGLFDNGKVDEVISIWELMNESGFVEDSRTYGILVHGFCKNGYIDKSLHVLEMAEQKGGV 126
Query: 194 PLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKL 252
+Y+ +I N+ A + N M K+ C PN+ N ++ + FE+A+++
Sbjct: 127 LDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRV 186
Query: 253 FQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
F+EM + H + P I T+NT+++ K + + + K +L GL
Sbjct: 187 FREMG--TMHCS----------PTIITYNTLINGFCKNKMFGEAYNLVKELLDKGL 230
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 104/242 (42%), Gaps = 14/242 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D Y+A++N + + A VL + + G KP+ Y ++ ++ K+ F
Sbjct: 128 DAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVF 187
Query: 116 RKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
R++ + P + Y L+N + EA + V+++ +G+ Y L LC
Sbjct: 188 REMGTMHCSPTIITYNTLINGFCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMEGLCLD 247
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
K AL +++ KP V + LI+ G +Q A ++ M + C+PNLV+
Sbjct: 248 HKVARALQLWNQVTSKGFKPDVQMHNILIRGLCSVGKMQLALSLYFDMNLWKCAPNLVSH 307
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N +++ + + G A+ ++ + + + PDI ++N L+ + R
Sbjct: 308 NTLMEGFYKDGDIRNALVIWARILRNG------------LEPDIISYNITLEGLCSCNRI 355
Query: 294 DD 295
D
Sbjct: 356 SD 357
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/140 (18%), Positives = 59/140 (42%), Gaps = 1/140 (0%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D L+P ++ Y+ ++ + A + Q+ +G KP + +++ + + G
Sbjct: 224 ELLDKGLDPGVITYSMLMEGLCLDHKVARALQLWNQVTSKGFKPDVQMHNILIRGLCSVG 283
Query: 107 KYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K L + + PN +++ L+ +++G A+ + R G+ Y
Sbjct: 284 KMQLALSLYFDMNLWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343
Query: 166 DLARCLCSAGKCEEALMQMD 185
LCS + +A++ +D
Sbjct: 344 ITLEGLCSCNRISDAILFLD 363
>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
[Arabidopsis lyrata subsp. lyrata]
gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 1164
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 123/281 (43%), Gaps = 27/281 (9%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD++ Y+ V+N R + + + +++++KQ+G KP++ TYG ++ ++ K E
Sbjct: 702 PDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEA 761
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F + + + +P+ + Y LV+ + G A +M R I Y + C
Sbjct: 762 FSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQ 821
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G EA ++ +P ++++T L+ +G+I++A + N M + CSPN+VT
Sbjct: 822 IGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVT 881
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEM------------------------AEDSNHINREYD 268
++ + G + A +L EM E++ + E++
Sbjct: 882 YTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFE 941
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH 309
GL D T+ T++DA D + + ML GL
Sbjct: 942 AAGLN-ADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQ 981
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 71/320 (22%), Positives = 128/320 (40%), Gaps = 35/320 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT+ Y ++ + G I+ M S + PD++ Y A++
Sbjct: 772 PDTIVYTTLVDGFCKRGDIRAASKFFYEMHSR---------------DITPDVLTYTAII 816
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR----KVQK 120
+ + A + ++ +G +P T+ E+M K + + FR +Q
Sbjct: 817 SGFCQIGDMVEAGKLFHEMLCRGLEPDIITF---TELMNGYCKAGHIKDAFRVHNHMIQA 873
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
PN + Y L++ L +EG D A + +M + G+ + Y + LC +G EEA
Sbjct: 874 GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEA 933
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
+ + + V+YT L+ A SG + A I +M P +VT N+++
Sbjct: 934 VKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNG 993
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ HG+ E+ KL M KG+ P+ TFN ++ +
Sbjct: 994 FCLHGMLEDGEKLLNWML-----------AKGIA-PNATTFNCLVKQYCIRNNLKAATAI 1041
Query: 300 YKRMLHHGLHFNAKRHLRMI 319
YK M G+ + K + ++
Sbjct: 1042 YKDMCSRGVEPDGKTYENLV 1061
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 121/284 (42%), Gaps = 22/284 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTL------ 46
PD + + + +AGHIK+ F V + M +L K G L
Sbjct: 842 PDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANEL 901
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E W L+P+I YN+++N + E A ++ + + G TY +M+
Sbjct: 902 LHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCK 961
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ + E + + K P + + VL+N G ++ + M +GI +A
Sbjct: 962 SGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATT 1021
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ L + C + A +C +P +Y L++ ++ N++ A ++F +MK
Sbjct: 1022 FNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMK 1081
Query: 224 N-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
S ++ T ++++K + + F EA ++F +M D ++E
Sbjct: 1082 GKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKE 1125
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 116/267 (43%), Gaps = 18/267 (6%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVN 134
A V ++ + G + +Y +V+ + G+ N + ++ K Y P+ ++Y ++N
Sbjct: 653 AIIVFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVIN 712
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194
R G+ D+ +E M+++G+ ++ Y + LC K EA ++ P
Sbjct: 713 GYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILP 772
Query: 195 LVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLF 253
+ YT L+ G+I+ A+ F +M + +P+++T ++ + + G EA KLF
Sbjct: 773 DTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLF 832
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK 313
EM +GL PDI TF +++ D V+ M+ G N
Sbjct: 833 HEML-----------CRGLE-PDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVV 880
Query: 314 RHLRMILDASRAGKV----ELLEITWE 336
+ +I + G + ELL W+
Sbjct: 881 TYTTLIDGLCKEGDLDSANELLHEMWK 907
>gi|125539409|gb|EAY85804.1| hypothetical protein OsI_07165 [Oryza sativa Indica Group]
Length = 649
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/315 (20%), Positives = 142/315 (45%), Gaps = 45/315 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ + GH+ + D++++M +P+ V YNA L
Sbjct: 258 PDVVIYSTLINGFSEQGHVDQALDLLNTMLC------------------KPNTVCYNAAL 299
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
++WE ++ ++ ++G P+ T+ +++ + + E +++K
Sbjct: 300 KGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCE 359
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD-LARCLCSAGKCEEALM 182
P+ + Y +++N+L G+ D+A+ + M + AL ++ + + C A + +A
Sbjct: 360 PDTVNYNIIINSLSERGRVDDALRLLNSM----VCKPDALGFNAVLKGFCRAERWHDASE 415
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYL 241
+ ++ + + +++ LI +G + A +F QM + C+P++VT + ++ +
Sbjct: 416 LIAQMFRDDCPLIEMTFNILIDTLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFS 475
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD-----L 296
E GL E A++LF+ M PDI+++N +L RW+D
Sbjct: 476 EQGLVEVAIQLFRSMP---------------CKPDIFSYNAVLKGLCRAARWEDAGELIA 520
Query: 297 ELVYKRMLHHGLHFN 311
E+V K + + FN
Sbjct: 521 EMVGKDCPPNEVTFN 535
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/329 (22%), Positives = 138/329 (41%), Gaps = 46/329 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV Y I +L + G + + +++SM +PD + +NAVL
Sbjct: 360 PDTVNYNIIINSLSERGRVDDALRLLNSMVC------------------KPDALGFNAVL 401
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
R ++W A ++ Q+ + T+ ++++ + G N + F ++ +
Sbjct: 402 KGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDTLCQNGLVNYATQVFEQMPRYRCT 461
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L+N +G + A+ M + + S Y + + LC A + E+A
Sbjct: 462 PDIVTYSSLLNGFSEQGLVEVAIQLFRSMPCKPDIFS---YNAVLKGLCRAARWEDAGEL 518
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLE 242
+ ++ P V++ LI + G + A + QM N+ S P++ T N ++ + E
Sbjct: 519 IAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSE 578
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G ++A+KL M+ PD ++N+ L +RW D E +
Sbjct: 579 QGRLDDALKLLSTMS---------------CKPDAISYNSTLKGLCRAERWQDAEELVAE 623
Query: 303 MLHHG-----LHFNAKRHLRMILDASRAG 326
ML + + F HL M +RAG
Sbjct: 624 MLRNKCTPNEVTFKYANHLLM---PNRAG 649
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/341 (21%), Positives = 134/341 (39%), Gaps = 27/341 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PD YN VL K+WE A ++ ++ + P+ T+ + G +
Sbjct: 186 VAPDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAV 245
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA-RC 170
+ ++ + P+ + Y L+N +G D+A+ + M + + Y+ A +
Sbjct: 246 QLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTM----LCKPNTVCYNAALKG 301
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPN 229
LC A + E+ M ++ + P +++ LI + + + +A + QM+ + C P+
Sbjct: 302 LCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPD 361
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
V NI++ + E G ++A++L M + PD FN +L
Sbjct: 362 TVNYNIIINSLSERGRVDDALRLLNSM---------------VCKPDALGFNAVLKGFCR 406
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPAL 349
+RW D + +M +I + G V +E + R R TP +
Sbjct: 407 AERWHDASELIAQMFRDDCPLIEMTFNILIDTLCQNGLVNYATQVFEQMPRY-RCTPDIV 465
Query: 350 IKERFCNRLENKDYGS-AISCLVSHPVSGSPE-FSRNAWLK 388
N + AI S P P+ FS NA LK
Sbjct: 466 TYSSLLNGFSEQGLVEVAIQLFRSMPC--KPDIFSYNAVLK 504
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/206 (18%), Positives = 82/206 (39%), Gaps = 25/206 (12%)
Query: 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK 186
+++ LV R+G+ +A + G + Y L C +G+ ++AL
Sbjct: 125 VSHNTLVAGYCRDGRLADAERVLGAARATG-AANVVTYTALIDGYCRSGRLDDALRL--- 180
Query: 187 ICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGL 245
I + P +Y +++ C+ + + ++N C PN VT ++++ ++GL
Sbjct: 181 IASMPVAPDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGL 240
Query: 246 FEEAMKLFQEMAE------------------DSNHINREYD--KKGLVIPDIYTFNTMLD 285
+ A++L +M + H+++ D L P+ +N L
Sbjct: 241 LDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTMLCKPNTVCYNAALK 300
Query: 286 ACAAEKRWDDLELVYKRMLHHGLHFN 311
+RW+D+ + M+ G N
Sbjct: 301 GLCIAERWEDIGELMAEMVRKGCSPN 326
>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 141/328 (42%), Gaps = 36/328 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y I LG+ G +++ ++ D M S G + + Y A++
Sbjct: 146 PNEHIYTIIISLLGREGLLEKCSEIFDEMAS-------QGVIR--------SVFSYTALI 190
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE-----FFRKVQ 119
NA R Q+E + +L+++K++ P+ TY V+ AC + +L +E F
Sbjct: 191 NAYGRNGQYETSLELLERMKRERVSPNILTYNTVIN---ACARGDLDWEGLLGLFAEMRH 247
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ P+ + Y L++ G DEA + M GIV Y + GK E+
Sbjct: 248 EGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEK 307
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVK 238
M + ++ P + SY LI+A G+I+ A +F QM+ C PN T +I++
Sbjct: 308 VAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLN 367
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
Y +HG +++ +LF +M E S PD T+N ++ + ++
Sbjct: 368 LYGKHGRYDDVRELFLQMKESSAE------------PDATTYNILIRVFGEGGYFKEVVT 415
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAG 326
++ ++ + N + + ++ + G
Sbjct: 416 LFHDLVDENIDPNMETYEGLVFACGKGG 443
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 137/325 (42%), Gaps = 40/325 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +Y + + G IKE DV M++ G + P+ Y+ +L
Sbjct: 322 PDISSYNVLIEAHAKLGSIKEAMDVFKQMQA-------AGCV--------PNASTYSILL 366
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + +++ + Q+K+ +P ATTY +++ V G + V F V ++
Sbjct: 367 NLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENID 426
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y+ LV + G ++A + M +GIV S+ Y L A +EAL+
Sbjct: 427 PNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVA 486
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ + +V +K + +Y LI G + I ++M+ + S N + + +++ Y +
Sbjct: 487 FNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQ 546
Query: 243 HGLFEEAMKLFQEMAEDSNHINRE--------YDKKGLV---------------IPDIYT 279
G +EEA+K F EM + ++ + Y GLV +P +
Sbjct: 547 SGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLC 606
Query: 280 FNTMLDACAAEKRWDDLELVYKRML 304
+ ML A RWDD + M+
Sbjct: 607 YCMMLAVYAKNGRWDDASELLDEMI 631
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 51/243 (20%)
Query: 91 SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI--PNALAYKVLVNTLWREGKTDEAVSA 148
S + LV + A G + F+ +Q+ PN Y ++++ L REG ++
Sbjct: 111 SLNDFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEI 170
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
++M +G++ S V SYT LI A
Sbjct: 171 FDEMASQGVIRS-----------------------------------VFSYTALINAYGR 195
Query: 209 SGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGL-FEEAMKLFQEMAEDSNHINRE 266
+G + + + +MK SPN++T N ++ A L +E + LF EM +
Sbjct: 196 NGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEG------ 249
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
V PD+ T+NT+L ACAA D+ E+V+K M+ G+ + ++ + G
Sbjct: 250 ------VQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLG 303
Query: 327 KVE 329
K+E
Sbjct: 304 KLE 306
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/327 (19%), Positives = 137/327 (41%), Gaps = 37/327 (11%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S+ PD Y + G+ G+ KE+ + + D ++P++ Y
Sbjct: 389 SAEPDATTYNILIRVFGEGGYFKEVVTLFHDLV---------------DENIDPNMETYE 433
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
++ AC + E A +L + +G PS+ Y ++E Y+ F + +
Sbjct: 434 GLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEV 493
Query: 122 YIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ + Y L++T R G E + + M GI +A + + +G+ EEA
Sbjct: 494 GSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEA 553
Query: 181 L---MQMDKI-CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNI 235
+ ++M+K+ C++ + L G++ +G + + F ++K + P+++ +
Sbjct: 554 IKAFVEMEKMRCELDEQTL----EGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCM 609
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
M+ Y ++G +++A +L EM + ++ + G +I Y + W
Sbjct: 610 MLAVYAKNGRWDDASELLDEMIK--TRVSSIHQVIGQMIKGDYD---------DDSNWQM 658
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDA 322
+E V+ ++ G F R +L+A
Sbjct: 659 VEYVFDKLNAEGCGF-GMRFYNTLLEA 684
>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
Length = 495
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 138/305 (45%), Gaps = 32/305 (10%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+I Y VL + + A +LQ ++ + P+ +++ + GK + YE
Sbjct: 70 PNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYEL 129
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
++++ + ++Y +L L + + D A++ +ME +V S Y L C A
Sbjct: 130 YKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRA 189
Query: 175 GKCEEALMQMDKICKVANKPLVV----SYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
G+ E+A+ ++++ + VV SY +I + + A Y+ +M K+ CSPN
Sbjct: 190 GRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPN 249
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAED-------------SNH-----INREYD--- 268
+VT N ++ G +EA +F+ M E + H I++ D
Sbjct: 250 VVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFV 309
Query: 269 ---KKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASR 324
++G V P++YT+ ++ C A K D LE++ KRM G N + R+I +
Sbjct: 310 DMLRRG-VEPNVYTYTALIGGLCDANKVEDALEIL-KRMSSTGREPNVVTYTRVIGALCK 367
Query: 325 AGKVE 329
G++E
Sbjct: 368 GGQIE 372
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 117/266 (43%), Gaps = 21/266 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY---NLV 111
PD+ YN V++ + +Q A +VL+++ + G P+ T+ +++ + GK N +
Sbjct: 213 PDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAM 272
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+E+ V+++ P A+ Y VL+ R + D+A DM RRG+ + Y L L
Sbjct: 273 FEYM--VERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGL 330
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF----CS 227
C A K E+AL + ++ +P VV+YT +I A G I+ A +FN C
Sbjct: 331 CDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCK 390
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P+ + +V F EA + F M E K + P IY M D
Sbjct: 391 PDSYAYSTIVYWLCRQSKFLEAYEYFLRMVES----------KLVAKPHIY--KAMADGL 438
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAK 313
+ + +E V HG+ K
Sbjct: 439 ELVQETEKVERVCLEASAHGIELQQK 464
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/284 (17%), Positives = 109/284 (38%), Gaps = 65/284 (22%)
Query: 84 KQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKT 142
+Q+ + + TY + ++ G + + F + K +PN Y +++ L + KT
Sbjct: 29 RQEDFQHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVLRGLCDDAKT 88
Query: 143 DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGL 202
D A+ ++DME + + + + L CLC GK
Sbjct: 89 DAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKV------------------------- 123
Query: 203 IQACLDSGNIQNAAY-IFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS- 260
+AAY ++ ++ + CS + ++ N++ + + A+ +F EM E++
Sbjct: 124 -----------DAAYELYKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAV 172
Query: 261 -------NHINREYDKKGL-------------------VIPDIYTFNTMLDACAAEKRWD 294
N + Y + G V+PD+Y++NT++ ++
Sbjct: 173 VPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLP 232
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
V +RM+ G N ++ GK++ +E++
Sbjct: 233 TARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYM 276
>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Brachypodium distachyon]
Length = 878
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 128/279 (45%), Gaps = 15/279 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
LEPDIV+YN ++ + + A+ +LK G +P +Y ++ V+ G+
Sbjct: 242 LEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAE 301
Query: 113 EFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F +++ +P A AY ++ + D+A +E + RG + S + + CL
Sbjct: 302 ELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCL 361
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
K +EAL D + K A KP + +Y +I +G + A I ++M+ PNL
Sbjct: 362 GKKRKVDEALTLFDVMKKDA-KPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNL 420
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
++ NIMV + EEA ++F+ +E + P+ T+ +++D +
Sbjct: 421 LSVNIMVDRLCKANQLEEAHRIFESASERGCN------------PNSVTYCSLIDGLGKK 468
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ DD ++++ML G N + +I + G+ E
Sbjct: 469 GKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKE 507
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 122/277 (44%), Gaps = 22/277 (7%)
Query: 41 FKTGTLERWDPRLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSA 92
FK G +E+ E PD+ Y+ +++ + Q + Q + QQG A
Sbjct: 536 FKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDA 595
Query: 93 TTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVED 151
Y V++ + GK + YE +++ ++ P Y +V+ L + + DEA E+
Sbjct: 596 RAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEE 655
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
+ +GI + LY L G+ +EA + ++++ K P V ++ L+ A + +
Sbjct: 656 AKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEE 715
Query: 212 IQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270
I A F MK CSPN T +I++ + +A +QEM K+
Sbjct: 716 IDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEM-----------QKQ 764
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
GL IP++ T+ TM+ A D +++R +G
Sbjct: 765 GL-IPNVVTYTTMISGLAKVGNITDAYSLFERFKTNG 800
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/348 (21%), Positives = 148/348 (42%), Gaps = 38/348 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLE----- 47
P++V Y S+ LG+ G I + + + + M SL + F G E
Sbjct: 453 PNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKI 512
Query: 48 -----RWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
R R PD+ + N ++ + + E + + +K G P +Y +++ +
Sbjct: 513 YKEMIRRGGR--PDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGL 570
Query: 103 LACGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
G+ F+ + Q+ + +A AY +V+ L + GK D+A +E+M+ + + +
Sbjct: 571 TKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTV 630
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
A Y + L + +EA M ++ + V+ Y+ LI G I A I +
Sbjct: 631 ATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEE 690
Query: 222 -MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
MK +PN+ T N ++ A ++ +EA+ FQ M E P+ YT+
Sbjct: 691 MMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCS------------PNTYTY 738
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+ +++ ++++ + ++ M GL N + MI ++ G +
Sbjct: 739 SILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNI 786
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/327 (20%), Positives = 137/327 (41%), Gaps = 34/327 (10%)
Query: 5 PDTVAYRSIAVTL---GQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
PD V+Y S+ L G+ G +ELF +++ R +P YN
Sbjct: 279 PDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCA------------------YAYN 320
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
++ ++++ A+ +L++L+++G PS ++ ++ + K + F ++K
Sbjct: 321 TMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKD 380
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
PN Y ++++ L G+ +EA ++ME G+ + + LC A + EEA
Sbjct: 381 AKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAH 440
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAY 240
+ + P V+Y LI G I +A +F +M + N + +++ +
Sbjct: 441 RIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNF 500
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
HG E+ K+++EM PD+ NT +D + ++
Sbjct: 501 FMHGRKEDGHKIYKEMIRRGGR------------PDLTLLNTYMDCVFKAGEVEKGRAIF 548
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGK 327
+ M G + + + +I ++AG+
Sbjct: 549 EDMKSFGFLPDVRSYSILIHGLTKAGQ 575
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 123/288 (42%), Gaps = 52/288 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +Y + L +AG +E ++ +M ++ F D YNAV+
Sbjct: 558 PDVRSYSILIHGLTKAGQARETSNIFQAMS---QQGFAL------------DARAYNAVV 602
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + + + A+ VL+++K + P+ TYG +++ + + + Y F + + I
Sbjct: 603 DGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIE 662
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM- 182
N + Y L++ + G+ DEA +E+M ++G+ + + L L + +EAL+
Sbjct: 663 LNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALIC 722
Query: 183 ------------------QMDKICKVA--NK--------------PLVVSYTGLIQACLD 208
++ +C+V NK P VV+YT +I
Sbjct: 723 FQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAK 782
Query: 209 SGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
GNI +A +F + K N P+ + N +++ EA ++F+E
Sbjct: 783 VGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEE 830
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 102/236 (43%), Gaps = 15/236 (6%)
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK- 120
A++ VR ++ E AF V+ ++ +P + Y +++ + + E R++Q
Sbjct: 146 ALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDV 205
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
Y + + LV L REG+ + A++ V++++ + LY C AG + A
Sbjct: 206 GYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMA 265
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKA 239
++ +P VSYT ++ +G + A +F QM+ P N M+
Sbjct: 266 WKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMG 325
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
Y F++A KL + + E IP + +FN++L C +KR D
Sbjct: 326 YGSAERFDDAYKLLERLRERG------------CIPSVVSFNSIL-TCLGKKRKVD 368
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/248 (17%), Positives = 111/248 (44%), Gaps = 17/248 (6%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P Y SI L + + E + + + +S +E ++++Y+++
Sbjct: 627 HPTVATYGSIVDGLAKIDRLDEAYMLFEEAKS---------------KGIELNVILYSSL 671
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
++ + + + A+ +L+++ ++G P+ T+ +M+ ++ + + F+ +++
Sbjct: 672 IDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKC 731
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN Y +L+N L R K ++A ++M+++G++ + Y + L G +A
Sbjct: 732 SPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYS 791
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYL 241
++ P S+ LI+ ++ A +F + + C N+ TC ++ A
Sbjct: 792 LFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRGCRLNVKTCISLLDALN 851
Query: 242 EHGLFEEA 249
+ E+A
Sbjct: 852 KTECLEQA 859
>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 135/309 (43%), Gaps = 20/309 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P ++ Y ++++ +WE A + ++ QG +P+ T+ ++++V+ GK
Sbjct: 273 MTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAK 332
Query: 113 EFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +Q+ +PN L Y L+ G + A M +G Y L
Sbjct: 333 DLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGY 392
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NL 230
C K EEA+ + + +V +P V +Y L+ G + +A +F MK + P +L
Sbjct: 393 CKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDL 452
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAA 289
I + ++G EAM+LF ++ + Y+ K DI FN ++D C A
Sbjct: 453 YIYGIFLNGLCKNGCLFEAMELFNKL--------KSYNIK----LDIECFNCLIDGLCKA 500
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR----ADRIT 345
K EL ++++ L + + MI + R G+V I ++ + + D+IT
Sbjct: 501 GKLETAWEL-FEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKIT 559
Query: 346 PPALIKERF 354
LI+ F
Sbjct: 560 YATLIRGFF 568
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 122/282 (43%), Gaps = 20/282 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDIV Y ++ + A + ++++ G P+A TYG +M+ + G ++ +
Sbjct: 164 PDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKL 223
Query: 115 FRKVQK-------SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+++ ++ P ++Y ++++ L ++ + DEA E+M+ +G+ + Y L
Sbjct: 224 HQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSL 283
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
C GK EEA +++ +P VV++ LI G + A + M +
Sbjct: 284 IHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGI 343
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
PNL+T N +++ + G A +LF M PD+ + +++
Sbjct: 344 VPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCE------------PDVICYTVLING 391
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+ ++ +Y ML G + K + ++ + GKV
Sbjct: 392 YCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKV 433
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/314 (20%), Positives = 134/314 (42%), Gaps = 28/314 (8%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVN 134
AF + P +++ ++ + Y+ V+ + +++ S I P+ +L+N
Sbjct: 80 AFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLN 139
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194
L + E ++ + + RRG + Y L + LC + +A + ++ K+ P
Sbjct: 140 CLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTP 199
Query: 195 LVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-------PNLVTCNIMVKAYLEHGLFE 247
++Y L++ +GNI A + +M N S P +++ +I++ A + +
Sbjct: 200 NAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRRED 259
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
EA LF+EM + P + ++ +++ +W++ + ++ M++ G
Sbjct: 260 EARDLFEEMKVQG------------MTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQG 307
Query: 308 LHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPALIKERFCNRLENKDY 363
+ N +I + GKV +LLE+ + + +T +LI E FC D
Sbjct: 308 VQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLI-EGFC---LVGDL 363
Query: 364 GSAISCLVSHPVSG 377
SA VS P G
Sbjct: 364 NSARELFVSMPSKG 377
>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 141/328 (42%), Gaps = 36/328 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y I LG+ G +++ ++ D M S G + + Y A++
Sbjct: 146 PNEHIYTIIISLLGREGLLEKCSEIFDEMAS-------QGVIR--------SVFSYTALI 190
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE-----FFRKVQ 119
NA R Q+E + +L+++K++ P+ TY V+ AC + +L +E F
Sbjct: 191 NAYGRNGQYETSLELLERMKRERVSPNILTYNTVIN---ACARGDLDWEGLLGLFAEMRH 247
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ P+ + Y L++ G DEA + M GIV Y + GK E+
Sbjct: 248 EGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEK 307
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVK 238
M + ++ P + SY LI+A G+I+ A +F QM+ C PN T +I++
Sbjct: 308 VAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLN 367
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
Y +HG +++ +LF +M E S PD T+N ++ + ++
Sbjct: 368 LYGKHGRYDDVRELFLQMKESSAE------------PDATTYNILIRVFGEGGYFKEVVT 415
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAG 326
++ ++ + N + + ++ + G
Sbjct: 416 LFHDLVDENIDPNMETYEGLVFACGKGG 443
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 137/325 (42%), Gaps = 40/325 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +Y + + G IKE DV M++ G + P+ Y+ +L
Sbjct: 322 PDISSYNVLIEAHAKLGSIKEAMDVFKQMQA-------AGCV--------PNASTYSILL 366
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + +++ + Q+K+ +P ATTY +++ V G + V F V ++
Sbjct: 367 NLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENID 426
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y+ LV + G ++A + M +GIV S+ Y L A +EAL+
Sbjct: 427 PNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVA 486
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ + +V +K + +Y LI G + I ++M+ + S N + + +++ Y +
Sbjct: 487 FNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQ 546
Query: 243 HGLFEEAMKLFQEMAEDSNHINRE--------YDKKGLV---------------IPDIYT 279
G +EEA+K F EM + ++ + Y GLV +P +
Sbjct: 547 SGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLC 606
Query: 280 FNTMLDACAAEKRWDDLELVYKRML 304
+ ML A RWDD + M+
Sbjct: 607 YCMMLAVYAKNGRWDDASELLDEMI 631
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 51/243 (20%)
Query: 91 SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI--PNALAYKVLVNTLWREGKTDEAVSA 148
S + LV + A G + F+ +Q+ PN Y ++++ L REG ++
Sbjct: 111 SLNDFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEI 170
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
++M +G++ S V SYT LI A
Sbjct: 171 FDEMASQGVIRS-----------------------------------VFSYTALINAYGR 195
Query: 209 SGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGL-FEEAMKLFQEMAEDSNHINRE 266
+G + + + +MK SPN++T N ++ A L +E + LF EM +
Sbjct: 196 NGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEG------ 249
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
V PD+ T+NT+L ACAA D+ E+V+K M+ G+ + ++ + G
Sbjct: 250 ------VQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLG 303
Query: 327 KVE 329
K+E
Sbjct: 304 KLE 306
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/327 (19%), Positives = 137/327 (41%), Gaps = 37/327 (11%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S+ PD Y + G+ G+ KE+ + + D ++P++ Y
Sbjct: 389 SAEPDATTYNILIRVFGEGGYFKEVVTLFHDLV---------------DENIDPNMETYE 433
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
++ AC + E A +L + +G PS+ Y ++E Y+ F + +
Sbjct: 434 GLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEV 493
Query: 122 YIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ + Y L++T R G E + + M GI +A + + +G+ EEA
Sbjct: 494 GSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEA 553
Query: 181 L---MQMDKI-CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNI 235
+ ++M+K+ C++ + L G++ +G + + F ++K + P+++ +
Sbjct: 554 IKAFVEMEKMRCELDEQTL----EGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCM 609
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
M+ Y ++G +++A +L EM + ++ + G +I Y + W
Sbjct: 610 MLAVYAKNGRWDDASELLDEMIK--TRVSSIHQVIGQMIKGDYD---------DDSNWQM 658
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDA 322
+E V+ ++ G F R +L+A
Sbjct: 659 VEYVFDKLNAEGCGF-GMRFYNTLLEA 684
>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
Length = 796
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 114/256 (44%), Gaps = 14/256 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V YN V+N Q + A+ + + QG P+ TY +V++ + +
Sbjct: 202 PNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGV 261
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F++ + K PN + Y L++ G+ E V +++M G+ Y L LC
Sbjct: 262 FQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCK 321
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
GKC EA D + + KP V Y ++ G + + M N SPN
Sbjct: 322 KGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYI 381
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
NI+ A+ + + EAM +F +M + +GL P++ + T++DA R
Sbjct: 382 FNIVFCAFAKKAMIGEAMDIFNKMRQ-----------QGLS-PNVVNYATLIDALCKLGR 429
Query: 293 WDDLELVYKRMLHHGL 308
DD EL + +M++ G+
Sbjct: 430 VDDAELKFNQMINEGV 445
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 149/353 (42%), Gaps = 33/353 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V+Y ++ G + + +++ L+ D + P++V Y V+
Sbjct: 202 PNLVSYNTVINGFFTEGQVDKAYNLF---------------LDMTDQGIPPNVVTYTIVI 246
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + + A V QQ+ +G +P+ TY ++ L+ G++ V +++ +
Sbjct: 247 DGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLE 306
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y +L++ L ++GK EA + M R+GI ++Y + + G E
Sbjct: 307 PDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSF 366
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+D + P + + A I A IFN+M+ SPN+V ++ A +
Sbjct: 367 LDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCK 426
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G ++A F +M + V P+I F +++ +W+ ++
Sbjct: 427 LGRVDDAELKFNQMINEG------------VAPNIVVFTSLVYGLCTIDKWEKAGELFFE 474
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPALIK 351
M++ G+H N ++ + G+V L+++ R D I+ ALI+
Sbjct: 475 MVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIR 527
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 117/293 (39%), Gaps = 29/293 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + + + I E D+ + MR L P++V Y ++
Sbjct: 377 PNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQ---------------QGLSPNVVNYATLI 421
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE-FFRKVQKSYI 123
+A + + + A Q+ +G P+ + ++ + K+ E FF V +
Sbjct: 422 DALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIH 481
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + ++ L EG+ +A ++ MER G Y L R C GK +EA
Sbjct: 482 PNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKL 541
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+D + V KP +Y L+ G I +A +F +M N +P +VT N ++ +
Sbjct: 542 LDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFK 601
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
F EA +L+ M + IYT+N +L+ + D+
Sbjct: 602 TRRFSEAKELYLNMITSGKQWS------------IYTYNIILNGLSKNNCVDE 642
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 123/293 (41%), Gaps = 49/293 (16%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM------------- 99
LEPD Y +L+ ++ + A + + ++G KP + YG+++
Sbjct: 305 LEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMH 364
Query: 100 ---EVMLACGK------YNLVY-------------EFFRKV-QKSYIPNALAYKVLVNTL 136
++M+ G +N+V+ + F K+ Q+ PN + Y L++ L
Sbjct: 365 SFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDAL 424
Query: 137 WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV 196
+ G+ D+A M G+ + ++ L LC+ K E+A ++ P V
Sbjct: 425 CKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNV 484
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
V + ++ G + A + + M+ + P++++ N +++ + G +EA KL
Sbjct: 485 VFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDI 544
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
M + P+ T+NT+L + R DD V++ ML +G+
Sbjct: 545 MLSVG------------LKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGI 585
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/300 (20%), Positives = 117/300 (39%), Gaps = 28/300 (9%)
Query: 67 CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI--- 123
C ++ E +L+++ + G P+ +Y +++ + E + +
Sbjct: 141 CDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSC 200
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN ++Y ++N + EG+ D+A + DM +GI + Y + LC A + A
Sbjct: 201 PPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEG 260
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYL 241
++ +P +V+YT LI L G + + +M + P+ T +++
Sbjct: 261 VFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLC 320
Query: 242 EHGLFEEAMKLFQEMAEDS--------NHINREYDKKGL---------------VIPDIY 278
+ G EA KLF M I Y KG + P+ Y
Sbjct: 321 KKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHY 380
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
FN + A A + + ++ +M GL N + +I + G+V+ E+ + +
Sbjct: 381 IFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQM 440
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 17/255 (6%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ V + +I L G + + +ID M ER R PDI+ YNA+
Sbjct: 481 HPNVVFFNTIMCNLCTEGRVMKAQRLIDLM-------------ERVGTR--PDIISYNAL 525
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
+ + + A +L + G KP+ TY ++ G+ + Y F+++ + I
Sbjct: 526 IRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGI 585
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P + Y +++ L++ + EA +M G S Y + L +EAL
Sbjct: 586 TPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALK 645
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYL 241
+C + ++++ +I A L G ++A +F + N P++ T ++ + +
Sbjct: 646 MFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLI 705
Query: 242 EHGLFEEAMKLFQEM 256
E G EE +F EM
Sbjct: 706 EEGSLEEFDGMFSEM 720
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/260 (19%), Positives = 110/260 (42%), Gaps = 17/260 (6%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+ + PD ++Y ++ G E ++D M S+ L+P+ Y
Sbjct: 513 VGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVG---------------LKPNECTY 557
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N +L+ R + + A+ V Q++ G P TY ++ + +++ E + +
Sbjct: 558 NTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMIT 617
Query: 121 SYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
S ++ Y +++N L + DEA+ + + + + + + L G+ E+
Sbjct: 618 SGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKED 677
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A+ I P V +Y + + ++ G+++ +F++M K+ C+PN + N +V+
Sbjct: 678 AMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNFLVR 737
Query: 239 AYLEHGLFEEAMKLFQEMAE 258
L G A ++ E
Sbjct: 738 RLLLRGDISRAGAYLSKIDE 757
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+ DI+ +N ++ A ++ + E A + + G P TTY L+ E ++ G
Sbjct: 655 LQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFD 714
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERR 155
F +++KS PN+L LV L G A + + ++ +
Sbjct: 715 GMFSEMEKSGCAPNSLMLNFLVRRLLLRGDISRAGAYLSKIDEK 758
>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 779
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 116/238 (48%), Gaps = 21/238 (8%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+E ++ + A++NA R Q E + +L ++K++ P+ TY V+ AC K L +
Sbjct: 105 VEWNVYSFTALINAYGRNGQHEASLHLLARMKREKVTPNLITYNTVIN---ACAKGGLEW 161
Query: 113 E----FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
E F +++ I P+ + Y L++ G +EA M G+V + Y L
Sbjct: 162 EGLLGLFAQMRHEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNAL 221
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-C 226
A + E + ++ + N P VV+Y LI+A +G + AA +F QM+ C
Sbjct: 222 VDIYGQADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGC 281
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
+P++VT + +++AY +HG ++E LF +M E PD+ T+NT++
Sbjct: 282 TPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKERGTE------------PDVNTYNTLI 327
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 121/260 (46%), Gaps = 21/260 (8%)
Query: 52 RLEPDIVVYNAVLNACVRRK-QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
++ P+++ YN V+NAC + +WEG + Q++ +G +P TY ++ AC L
Sbjct: 139 KVTPNLITYNTVINACAKGGLEWEGLLGLFAQMRHEGIQPDIITYNTLLS---ACSSRGL 195
Query: 111 VYE---FFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
V E FR + ++ +P+++ Y LV+ + + + + +ME+ G Y
Sbjct: 196 VEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGELLREMEQAGNAPDVVAYNI 255
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC 226
L AGK A ++ + P VV+++ L++A G +F MK
Sbjct: 256 LIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKERG 315
Query: 227 S-PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
+ P++ T N +++ + + G F+E++ LF ++ + G V PD+ T+ +L
Sbjct: 316 TEPDVNTYNTLIQVFGQGGFFQESINLFWDLLD------------GGVEPDMSTYAGLLY 363
Query: 286 ACAAEKRWDDLELVYKRMLH 305
+C + +++ ML
Sbjct: 364 SCGKGGLHKAAKKIHRHMLQ 383
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/324 (20%), Positives = 131/324 (40%), Gaps = 29/324 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ G ++E V +M + + PD + YNA++
Sbjct: 178 PDIITYNTLLSACSSRGLVEEAGMVFRTMN---------------EAGVVPDSITYNALV 222
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-I 123
+ + + EG +L++++Q G P Y +++E GKY + F+++Q++
Sbjct: 223 DIYGQADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCT 282
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + L+ + G DE DM+ RG Y L + G +E++
Sbjct: 283 PDVVTFSTLLEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINL 342
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ +P + +Y GL+ +C G + A I M +++ +P ++ AY
Sbjct: 343 FWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGN 402
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
L+ EA F M E PD+ T+N ++ A A + + Y
Sbjct: 403 AALYSEATYAFNSMKESG------------CKPDLETYNALIGAHAGGGLYCEAGSAYLT 450
Query: 303 MLHHGLHFNAKRHLRMILDASRAG 326
M+ G+ + + +I R G
Sbjct: 451 MIDEGISADVSTYNSLIEAFGRGG 474
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 76/362 (20%), Positives = 138/362 (38%), Gaps = 77/362 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD++ Y ++ GQA + + +++ M PD+V YN ++
Sbjct: 213 PDSITYNALVDIYGQADRHEGVGELLREMEQAGNA---------------PDVVAYNILI 257
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
A R ++ A + +Q+++ G P T+ ++E G Y+ V F + ++
Sbjct: 258 EAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKERGTE 317
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y L+ + G E+++ D+ G+ + Y L C G +A +
Sbjct: 318 PDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMSTYAGLLYS-CGKGGLHKAAKK 376
Query: 184 MDK-ICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMV---- 237
+ + + + P +TGLI A ++ A Y FN MK + C P+L T N ++
Sbjct: 377 IHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMKESGCKPDLETYNALIGAHA 436
Query: 238 -------------------------------KAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
+A+ GLF++A++ ++M E NR
Sbjct: 437 GGGLYCEAGSAYLTMIDEGISADVSTYNSLIEAFGRGGLFDDAIEFSRDMEEARCSPNRH 496
Query: 267 --------YDKKGLV---------------IPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
Y GL +P + ++ +L CA RWDD V + M
Sbjct: 497 TYEALMGVYCTAGLFDEAKAQFLDLQVGGELPSVDSYCLLLSVCARRNRWDDASKVLEEM 556
Query: 304 LH 305
L
Sbjct: 557 LE 558
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 90/206 (43%), Gaps = 14/206 (6%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y +++ + REG D+A EDM + + + L G+ E +L
Sbjct: 72 PNEHVYTIMIGIMGREGMLDKASELFEDMPLNDVEWNVYSFTALINAYGRNGQHEASLHL 131
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSG-NIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYL 241
+ ++ + P +++Y +I AC G + +F QM++ P+++T N ++ A
Sbjct: 132 LARMKREKVTPNLITYNTVINACAKGGLEWEGLLGLFAQMRHEGIQPDIITYNTLLSACS 191
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
GL EEA +F+ M E V+PD T+N ++D R + + + +
Sbjct: 192 SRGLVEEAGMVFRTMNEAG------------VVPDSITYNALVDIYGQADRHEGVGELLR 239
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGK 327
M G + + +I RAGK
Sbjct: 240 EMEQAGNAPDVVAYNILIEAYGRAGK 265
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/310 (20%), Positives = 111/310 (35%), Gaps = 45/310 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKE----LFDVIDS------------MRSLPK-------KKF 41
PD Y ++ GQ G +E +D++D + S K KK
Sbjct: 318 PDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAAKKI 377
Query: 42 KTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
L+ + + P + ++ A + A + +K+ G KP TY ++
Sbjct: 378 HRHMLQSY---VTPTTDGFTGLITAYGNAALYSEATYAFNSMKESGCKPDLETYNALIGA 434
Query: 102 MLACGKY-NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
G Y + + + + Y L+ R G D+A+ DME +
Sbjct: 435 HAGGGLYCEAGSAYLTMIDEGISADVSTYNSLIEAFGRGGLFDDAIEFSRDMEEARCSPN 494
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y L C+AG +EA Q + P V SY L+ C +A+ +
Sbjct: 495 RHTYEALMGVYCTAGLFDEAKAQFLDLQVGGELPSVDSYCLLLSVCARRNRWDDASKVLE 554
Query: 221 QMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT- 279
+M PN+ + +V L+ EM + +N EY GL + + +
Sbjct: 555 EM---LEPNMPSIYGVVGGILK-----------GEMDDGTNWQRVEYAFDGLKVDGVGSN 600
Query: 280 ---FNTMLDA 286
+N +L+A
Sbjct: 601 LRFYNALLEA 610
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 30/189 (15%)
Query: 192 NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK--NFCSPNLVTCNIMVKAYLEHGLFEEA 249
NK + ++ + + + Q A +F M+ +C PN IM+ G+ ++A
Sbjct: 34 NKLTINDFSLIFREFAQRSDWQKALRLFKYMQRHQWCKPNEHVYTIMIGIMGREGMLDKA 93
Query: 250 MKLFQEMAEDSNHIN--------REYDKKGL---------------VIPDIYTFNTMLDA 286
+LF++M + N Y + G V P++ T+NT+++A
Sbjct: 94 SELFEDMPLNDVEWNVYSFTALINAYGRNGQHEASLHLLARMKREKVTPNLITYNTVINA 153
Query: 287 CA-AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA---- 341
CA W+ L ++ +M H G+ + + ++ S G VE + + + A
Sbjct: 154 CAKGGLEWEGLLGLFAQMRHEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVP 213
Query: 342 DRITPPALI 350
D IT AL+
Sbjct: 214 DSITYNALV 222
>gi|168023641|ref|XP_001764346.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684498|gb|EDQ70900.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 978
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 140/332 (42%), Gaps = 40/332 (12%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMR----------------------SLPKKKFKT 43
D + Y S+ +AG + LF + M LPK
Sbjct: 329 DCMFYTSLISACAKAGKVDLLFQIFHEMEVAGIEANVHTFGAMIDGCARAGQLPKAFGAY 388
Query: 44 GTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ--KPSATTYGLVMEV 101
G + ++PD V++N ++NAC R + AF VL +K + KP TYG ++
Sbjct: 389 GIM--ISKNVKPDRVIFNTLINACTRAGAVQRAFDVLTDMKAEATPIKPDHVTYGALISA 446
Query: 102 MLACGKYNLVYEFFRKVQKSYIPNALA-YKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
G+ + E ++ +++S + + A Y +V+ ++G D A+ +D+++ G+
Sbjct: 447 CARAGEVDRALEVYQNMRESNVKGSPACYTAVVHACSQKGNVDYALLVYDDLKKDGVKPD 506
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
+ L A E+A + + K KP V Y+ L+ C + GN + A ++
Sbjct: 507 EVFFSALVDAAGHAQDIEKAFSIIANMKKEGLKPGAVVYSSLMGVCSNLGNWEKALEVYQ 566
Query: 221 QMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
+++ P + T N ++ A E F A+ + Q++ K ++P+ +
Sbjct: 567 DIRSSGLQPTVSTFNALMTALCEANQFTRALSILQDV------------KNSGIMPNQIS 614
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
++ +L AC EK D +Y L G+ N
Sbjct: 615 YSILLRACEKEKMADMALDLYMTALSEGIKPN 646
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 114/253 (45%), Gaps = 19/253 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + ++ +AG ++ FDV+ M++ P ++PD V Y A++
Sbjct: 398 PDRVIFNTLINACTRAGAVQRAFDVLTDMKA------------EATP-IKPDHVTYGALI 444
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN---LVYEFFRKVQKS 121
+AC R + + A V Q +++ K S Y V+ G + LVY+ +K
Sbjct: 445 SACARAGEVDRALEVYQNMRESNVKGSPACYTAVVHACSQKGNVDYALLVYDDLKK--DG 502
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
P+ + + LV+ ++A S + +M++ G+ A +Y L + G E+AL
Sbjct: 503 VKPDEVFFSALVDAAGHAQDIEKAFSIIANMKKEGLKPGAVVYSSLMGVCSNLGNWEKAL 562
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAY 240
I +P V ++ L+ A ++ A I +KN PN ++ +I+++A
Sbjct: 563 EVYQDIRSSGLQPTVSTFNALMTALCEANQFTRALSILQDVKNSGIMPNQISYSILLRAC 622
Query: 241 LEHGLFEEAMKLF 253
+ + + A+ L+
Sbjct: 623 EKEKMADMALDLY 635
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 112/269 (41%), Gaps = 21/269 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+ D + Y ++++AC + + + F + +++ G + + T+G +++ G+ +
Sbjct: 326 LKADCMFYTSLISACAKAGKVDLLFQIFHEMEVAGIEANVHTFGAMIDGCARAGQLPKAF 385
Query: 113 EFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM--ERRGIVGSAALYYDLAR 169
+ + K+ P+ + + L+N R G A + DM E I Y L
Sbjct: 386 GAYGIMISKNVKPDRVIFNTLINACTRAGAVQRAFDVLTDMKAEATPIKPDHVTYGALIS 445
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSP 228
AG+ + AL + + K YT ++ AC GN+ A +++ + K+ P
Sbjct: 446 ACARAGEVDRALEVYQNMRESNVKGSPACYTAVVHACSQKGNVDYALLVYDDLKKDGVKP 505
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
+ V + +V A E+A + M K+GL P +++++ C+
Sbjct: 506 DEVFFSALVDAAGHAQDIEKAFSIIANM-----------KKEGLK-PGAVVYSSLMGVCS 553
Query: 289 AEKRWDDLELVYKRMLHHGLH-----FNA 312
W+ VY+ + GL FNA
Sbjct: 554 NLGNWEKALEVYQDIRSSGLQPTVSTFNA 582
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 104/257 (40%), Gaps = 16/257 (6%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
Y +L+ C K +GA VL L+ +G K Y ++ GK +L+++ F +++
Sbjct: 298 YTMLLSVCCHAKDIDGALRVLALLESRGLKADCMFYTSLISACAKAGKVDLLFQIFHEME 357
Query: 120 KSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ I N + +++ R G+ +A A M + + ++ L AG +
Sbjct: 358 VAGIEANVHTFGAMIDGCARAGQLPKAFGAYGIMISKNVKPDRVIFNTLINACTRAGAVQ 417
Query: 179 EALMQMDKICKVAN--KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTC-NI 235
A + + A KP V+Y LI AC +G + A ++ M+ C
Sbjct: 418 RAFDVLTDMKAEATPIKPDHVTYGALISACARAGEVDRALEVYQNMRESNVKGSPACYTA 477
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
+V A + G + A+ ++ ++ +D V PD F+ ++DA + +
Sbjct: 478 VVHACSQKGNVDYALLVYDDLKKDG------------VKPDEVFFSALVDAAGHAQDIEK 525
Query: 296 LELVYKRMLHHGLHFNA 312
+ M GL A
Sbjct: 526 AFSIIANMKKEGLKPGA 542
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 70/348 (20%), Positives = 136/348 (39%), Gaps = 24/348 (6%)
Query: 3 SYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNA 62
S+ +TV + +V + K + + R LP + LE +LE +I Y
Sbjct: 178 SFAETVTVKVNSVITEERSRKKSVKTLQKGSRVLP-----STILELLPLKLETNIKFYID 232
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPS-ATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
V + ++ + + +L ++ + G+ + E A G + F + +++
Sbjct: 233 VYASMLKAGRIKDCLKLLGEMDKAGKLARMKVNHSKFYEACKARGSVEDAFAFAKLMRE- 291
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
Y +L++ D A+ + +E RG+ Y L AGK + L
Sbjct: 292 -FSTLQHYTMLLSVCCHAKDIDGALRVLALLESRGLKADCMFYTSLISACAKAGKVD-LL 349
Query: 182 MQMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNA--AYIFNQMKNFCSPNLVTCNIMVK 238
Q+ +VA + V ++ +I C +G + A AY KN P+ V N ++
Sbjct: 350 FQIFHEMEVAGIEANVHTFGAMIDGCARAGQLPKAFGAYGIMISKNV-KPDRVIFNTLIN 408
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
A G + A + +M ++ I PD T+ ++ ACA D
Sbjct: 409 ACTRAGAVQRAFDVLTDMKAEATPIK----------PDHVTYGALISACARAGEVDRALE 458
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
VY+ M + + + ++ S+ G V+ + ++ L + D + P
Sbjct: 459 VYQNMRESNVKGSPACYTAVVHACSQKGNVDYALLVYDDL-KKDGVKP 505
>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 804
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 124/285 (43%), Gaps = 36/285 (12%)
Query: 55 PDIVVYNAVLNACVRRKQ-WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
P ++ YN VLN + W +++ ++ +G P TY +++C + +YE
Sbjct: 226 PTLITYNVVLNVYGKMGMPWSNVTALVEAMRSRGVAPDLYTYN----TLISCCRRGSLYE 281
Query: 114 ----FFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
F++++ + + P+ + Y L++ + + EA+ +++ME G ++ Y L
Sbjct: 282 EAVHLFQQMKLEGFTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLI 341
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CS 227
G EEAL ++ KP V +YT L+ +G A +F +M+ C
Sbjct: 342 SAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCK 401
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQE------------------------MAEDSNHI 263
PN+ T N ++K + G F E MK+F + M + I
Sbjct: 402 PNICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGI 461
Query: 264 NREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+E + G V + TFNT++ A + +D VYK ML G+
Sbjct: 462 FKEMKRAGFV-AERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGV 505
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/328 (21%), Positives = 134/328 (40%), Gaps = 40/328 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVI------------DSMRSLPKKKFKTGTLER---- 48
PD V + ++ GQ G ++ + D+ +L + G+ ++
Sbjct: 437 PDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAV 496
Query: 49 WDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ LE PD+ YNAVL A R WE + VL +++ KP+ +Y ++
Sbjct: 497 YKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYAN 556
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTL-WREGKTD---EAVSAVEDMERRGIVGS 160
+ + F ++ Y + + VL+ TL K+D E A ++ RRGI
Sbjct: 557 GKEIERMNAFAEEI---YSGSVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPD 613
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
+ +A ++ + + P + +Y L+ S N Q + I
Sbjct: 614 ITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILR 673
Query: 221 Q-MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
+ ++ P+ ++ N ++ AY +G +EA ++F EM K ++PD+ T
Sbjct: 674 EVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEM------------KDSALVPDVVT 721
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHG 307
+NT + AA+ + + V + M+ G
Sbjct: 722 YNTFIATYAADSMFAEAIDVVRYMIKQG 749
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/253 (18%), Positives = 109/253 (43%), Gaps = 18/253 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P +V Y S+ + G ++E D+ KT + + ++PD+ Y +L
Sbjct: 332 PTSVTYNSLISAYAKGGLLEEALDL------------KTQMVHKG---IKPDVFTYTTLL 376
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ + + + A V +++ G KP+ T+ ++++ GK+ + + F ++ +
Sbjct: 377 SGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCS 436
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + L+ + G + ++M+R G V + L G ++A+
Sbjct: 437 PDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAV 496
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ + P + +Y ++ A G + + + +M++ C PN ++ + ++ AY
Sbjct: 497 YKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAY-A 555
Query: 243 HGLFEEAMKLFQE 255
+G E M F E
Sbjct: 556 NGKEIERMNAFAE 568
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 86/204 (42%), Gaps = 14/204 (6%)
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
A V++ L + G+ A S + ++ G+ Y L S+G+ +A+ +K+
Sbjct: 160 AIPVIIKILGKAGRVSSAASLLLALQNDGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKM 219
Query: 188 CKVANKPLVVSYTGLIQACLDSGNI-QNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGL 245
+ P +++Y ++ G N + M++ +P+L T N ++ L
Sbjct: 220 QQDGCNPTLITYNVVLNVYGKMGMPWSNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSL 279
Query: 246 FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
+EEA+ LFQ+M + PD T+N +LD +R + V + M
Sbjct: 280 YEEAVHLFQQMKLEG------------FTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEA 327
Query: 306 HGLHFNAKRHLRMILDASRAGKVE 329
+G + + +I ++ G +E
Sbjct: 328 NGFSPTSVTYNSLISAYAKGGLLE 351
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 1/132 (0%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ R P + YN+++ R + ++ + +L+++ ++G KP +Y V+ G+
Sbjct: 642 ETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMK 701
Query: 110 LVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
F +++ S +P+ + Y + T + EA+ V M ++G Y +
Sbjct: 702 EASRIFSEMKDSALVPDVVTYNTFIATYAADSMFAEAIDVVRYMIKQGCKPDQNTYNSIV 761
Query: 169 RCLCSAGKCEEA 180
C + EA
Sbjct: 762 DWYCKLDQRHEA 773
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 83/222 (37%), Gaps = 37/222 (16%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PDI NA+L+ R++ A +L + + PS TTY +M + +
Sbjct: 610 ISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSE 669
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E R+V +K P+ ++Y ++ R G+ EA +M+ +V
Sbjct: 670 EILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALV------------- 716
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMKNFCSPNL 230
P VV+Y I DS + + +K C P+
Sbjct: 717 ----------------------PDVVTYNTFIATYAADSMFAEAIDVVRYMIKQGCKPDQ 754
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGL 272
T N +V Y + EA + ++ H+++E + + L
Sbjct: 755 NTYNSIVDWYCKLDQRHEANSFVKNLSNLDPHVSKEEESRLL 796
>gi|449442128|ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Cucumis sativus]
Length = 591
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 2/206 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
LEPD++ Y A + A R K + VL Q++ +G KP+ T+ ++M + + N
Sbjct: 342 LEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQINEAL 401
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ + K++K +P++ Y L+ L + G+ + VEDME++G+ Y L C
Sbjct: 402 KVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCA 461
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C+ + E AL + K+ +V+ KP + +Y L++ ++ ++ + M KN S
Sbjct: 462 CAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKNDVSIEA 521
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEM 256
T I+V+ E+G A F EM
Sbjct: 522 GTYAILVRGLCENGKLHLACSFFGEM 547
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/360 (19%), Positives = 149/360 (41%), Gaps = 78/360 (21%)
Query: 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACV 68
+Y S+ LG+A + + +++++D M L G++ + + V+
Sbjct: 209 SYNSMVDILGKAKNFRLMWELVDEMNHL------AGSV---------SLETMSKVIRRLA 253
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALA 128
R + + A + +++ G T ++M+ ++ + FR+++ S N +
Sbjct: 254 RAGRHQEAIHAFRNIEKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLAS 313
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
+ VL++ + K DEA + ++E+ G+
Sbjct: 314 FNVLIHGYCKAKKLDEAWKIMGEVEKSGL------------------------------- 342
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFE 247
+P V+SYT I+A + +N + QM++ C PN++T I++ A +
Sbjct: 343 ----EPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQIN 398
Query: 248 EAMKLFQEMAE------------------------DSNHINREYDKKGLVIPDIYTFNTM 283
EA+K++++M + D I + +K+G V PD+ T+NT+
Sbjct: 399 EALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQG-VTPDVLTYNTL 457
Query: 284 LD-ACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARAD 342
+ ACA + L L+ K M + K + ++ R ++++L+ +H+ + D
Sbjct: 458 ISCACAHSQEETALTLLLK-MEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKND 516
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 18/200 (9%)
Query: 112 YEFFR--KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL--YYDL 167
Y F+ K Q Y + +Y +V+ L + V++M + GS +L +
Sbjct: 191 YGIFKWAKDQIPYRHSPESYNSMVDILGKAKNFRLMWELVDEMNH--LAGSVSLETMSKV 248
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227
R L AG+ +EA+ I K + L+ A + ++++A +F ++K
Sbjct: 249 IRRLARAGRHQEAIHAFRNIEKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSIP 308
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
NL + N+++ Y + +EA K+ E+ +K GL PD+ ++ ++A
Sbjct: 309 FNLASFNVLIHGYCKAKKLDEAWKIMGEV-----------EKSGLE-PDVISYTAFIEAH 356
Query: 288 AAEKRWDDLELVYKRMLHHG 307
EK + +++ V +M H G
Sbjct: 357 CREKDFRNVDKVLVQMEHKG 376
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 16/155 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD+ Y S+ LG+AG + ++ ++++ M K G + PD++ YN ++
Sbjct: 414 PDSSFYSSLIFILGKAGRLTDVKEIVEDME-------KQG--------VTPDVLTYNTLI 458
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ Q E A +L ++++ KP TY ++++ + ++ + K+ +
Sbjct: 459 SCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKNDVS 518
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
A Y +LV L GK A S +M + +V
Sbjct: 519 IEAGTYAILVRGLCENGKLHLACSFFGEMLSKAMV 553
>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
Length = 420
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 92/192 (47%), Gaps = 4/192 (2%)
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIPNAL 127
RR+ + + + Q +Y + + G+ E FR+++ K P++
Sbjct: 68 RRRGIPSSLRIYRPKLLNSQDTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSF 127
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
Y +L+N L ++ + + VS +++M+ RG + Y L C+AG+ + A+ +D++
Sbjct: 128 TYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEM 187
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK---NFCSPNLVTCNIMVKAYLEHG 244
P V+YT LIQ D G ++ A + +MK N C PN+VT ++ + G
Sbjct: 188 EHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKG 247
Query: 245 LFEEAMKLFQEM 256
LFE M+ EM
Sbjct: 248 LFEMGMEFLDEM 259
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 139/327 (42%), Gaps = 23/327 (7%)
Query: 45 TLERWDPRL----EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
+L + P+L + D++ Y+ +N ++ Q A + ++++++G P + TY +++
Sbjct: 75 SLRIYRPKLLNSQDTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILIN 134
Query: 101 VMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+ + + ++Q + + P + Y L++ G+ D A+ +++ME RGI
Sbjct: 135 GLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITP 194
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANK--PLVVSYTGLIQACLDSGNIQNAAY 217
+ Y L + LC G+ E A++ + ++ N+ P VV+YT LI G +
Sbjct: 195 NTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGME 254
Query: 218 IFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
++M + C PN T ++ + G F EA L EM + D
Sbjct: 255 FLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCEL------------D 302
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITW 335
+ +N+++D D + M+ G+ + + +I AG + E L +
Sbjct: 303 VVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQ 362
Query: 336 EHLARADRITPPALIKERFCNRLENKD 362
E RA I P ++ N D
Sbjct: 363 E--MRAKGIVPNSVTYTTLINGFTQAD 387
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/279 (20%), Positives = 120/279 (43%), Gaps = 16/279 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD YN ++N + Q E ++ +++ +G P+ TY ++ G+ + +
Sbjct: 124 PDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDI 183
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG--IVGSAALYYDLARCL 171
+++ + PN + Y L+ L G+ + A+ +++M+ RG + Y L L
Sbjct: 184 LDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGL 243
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C G E + +D++ P +YT LI G+ AA + N+M C ++
Sbjct: 244 CQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDV 303
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
V N ++ + G + A ++ M E KG V PD++T+ +++
Sbjct: 304 VIYNSLIDGLCKMGELDFAREMQILMVE-----------KG-VAPDVFTYTSLIQGLCDA 351
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
D+ + + M G+ N+ + +I ++A + +
Sbjct: 352 GLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTD 390
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 107/260 (41%), Gaps = 19/260 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y ++ AG + D++D M + P+ V Y A++
Sbjct: 159 PTVVTYTTLIHGFCTAGRVDAAMDILDEMEH---------------RGITPNTVTYTALI 203
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQK--PSATTYGLVMEVMLACGKYNLVYEFFRK-VQKS 121
+ E A VL+++K +G + P+ TY ++ + G + + EF + +
Sbjct: 204 QGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISG 263
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
PN Y L++ L ++G EA + +M G +Y L LC G+ + A
Sbjct: 264 CFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAR 323
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAY 240
+ + P V +YT LIQ D+G + A + +M+ PN VT ++ +
Sbjct: 324 EMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGF 383
Query: 241 LEHGLFEEAMKLFQEMAEDS 260
+ + A++L EM +
Sbjct: 384 TQADRTDHALQLVNEMKSNG 403
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/171 (19%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ Y ++ L Q G E +++ M ++ E D+V+YN++
Sbjct: 265 FPNNATYTALIHGLCQKGSFLEAAVLLNEMVAI---------------GCELDVVIYNSL 309
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSY 122
++ + + + A + + ++G P TY +++ + G + ++++ K
Sbjct: 310 IDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGI 369
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+PN++ Y L+N + +TD A+ V +M+ G++ + +Y L + L S
Sbjct: 370 VPNSVTYTTLINGFTQADRTDHALQLVNEMKSNGLMPAGDIYKILFKSLYS 420
>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
Length = 895
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 119/276 (43%), Gaps = 25/276 (9%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
V YN +++ R E AF +++ G P A TYG +M + + +
Sbjct: 279 VTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDE 338
Query: 118 VQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
+ S + PN + Y LV+ +EGKT EA +++M G+ + +Y +L R LC G+
Sbjct: 339 MSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQ 398
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNI 235
A + ++ KV +P +Y L+Q + A + N+M+N PN+ + I
Sbjct: 399 LGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGI 458
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINR-----------------------EYDKKGL 272
M+ ++G +EA L +EM + N E K
Sbjct: 459 MINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKAN 518
Query: 273 VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
V PD++ +N+++ + R ++ E Y ++ GL
Sbjct: 519 VHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGL 554
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 127/306 (41%), Gaps = 29/306 (9%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD Y S+ L G ++E +++ +R L PD Y+ +
Sbjct: 520 HPDLFCYNSLIKGLSTVGRMEE------------AEEYYAQVQKRG---LVPDEFTYSGL 564
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY- 122
++ + E A +L+Q+ G KP+A TY ++E Y V + + S
Sbjct: 565 IHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGD 624
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ Y +++ L R + A + ++E+ G+V +Y L LC E+A+
Sbjct: 625 KPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVG 684
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYL 241
+D++ K +P +V Y LI SG+I A +F+ + PN VT ++
Sbjct: 685 LLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNC 744
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
++G +A L++EM + + PD + +N + C+ + + +
Sbjct: 745 KNGDITDAFDLYKEMLDRG------------IAPDAFVYNVLATGCSDAADLEQALFLTE 792
Query: 302 RMLHHG 307
M + G
Sbjct: 793 EMFNRG 798
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 137/331 (41%), Gaps = 53/331 (16%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLERWDPR 52
P+ V Y ++ + G E FD++ M S L + K G L R
Sbjct: 346 PNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKL 405
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L+ PD YN ++ ++ +GAF +L +++ G P+ +YG+++ +
Sbjct: 406 LKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQ 465
Query: 105 CGKY----NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
G+ NL+ E + K PNA Y L+ +EG A A+E M + +
Sbjct: 466 NGESKEAGNLLEEMISEGLK---PNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPD 522
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y L + L + G+ EEA ++ K P +Y+GLI +GN++ A +
Sbjct: 523 LFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLR 582
Query: 221 QMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA----EDSNHIN----------- 264
QM N PN T +++ Y + +E+ + Q M + NHI
Sbjct: 583 QMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSE 642
Query: 265 ---------REYDKKGLVIPDIYTFNTMLDA 286
E +K GLV PD++ +++++
Sbjct: 643 NMEVAFMVLTEVEKNGLV-PDLHIYSSLISG 672
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/319 (21%), Positives = 132/319 (41%), Gaps = 27/319 (8%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQ-LKQQGQKPSATTYGLVMEVMLACGKY 108
D L P N +L +R E W L+ ++ G P TY +E +
Sbjct: 201 DLGLAPTRRCCNGLLKDLLRADAME-LLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDF 259
Query: 109 NLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ + F ++++ N + Y V+++ L R G +EA E+M G+ A Y L
Sbjct: 260 DAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGAL 319
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-C 226
LC + +EA +D++ KP +V Y L+ + G A I +M +
Sbjct: 320 MNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGV 379
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE-----DSNHIN-------REYDKKGL-- 272
PN + + +++ + G A KL +EM + D+ N +++DK G
Sbjct: 380 QPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFE 439
Query: 273 ---------VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDAS 323
++P++Y++ M++ + + + M+ GL NA + +I+ S
Sbjct: 440 LLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHS 499
Query: 324 RAGKVELLEITWEHLARAD 342
+ G + L E + +A+
Sbjct: 500 KEGNISLACEALEKMTKAN 518
>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
Length = 802
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 117/257 (45%), Gaps = 3/257 (1%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLE-RWDPRLEPDIVVYNAV 63
P+T+ Y ++ L +AG I++ +V + E + + P++V Y A+
Sbjct: 391 PNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGAL 450
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SY 122
++ + + A +L + G +P+ Y +++ GK + E F ++ K Y
Sbjct: 451 IDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGY 510
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P Y L++ ++++ + D A+ + M + Y + LC G+C++AL
Sbjct: 511 LPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALK 570
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYL 241
+ + + P VV+YT LI SG + + +F QM C+PN VT +++
Sbjct: 571 LLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCC 630
Query: 242 EHGLFEEAMKLFQEMAE 258
GL +EA L EM +
Sbjct: 631 AAGLLDEAHSLLSEMKQ 647
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 114/231 (49%), Gaps = 8/231 (3%)
Query: 106 GKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
GK+++ ++ + + K ++P+ Y ++ L K ++A ++M+ G+ Y
Sbjct: 267 GKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTY 326
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
L C AG E+A D++ + VV+YT L+ A L + + A+ IFN+M +
Sbjct: 327 TILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMID 386
Query: 225 F-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKG----LVIPDIYT 279
C PN +T + +V + G ++A +++ ++ S+++ ++ +G + P++ T
Sbjct: 387 AGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVT 446
Query: 280 FNTMLDA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ ++D C A K D EL+ ML +G N + +I + GK++
Sbjct: 447 YGALIDGLCKAHKVVDAQELL-DAMLSNGCEPNHIIYDALIDGFCKVGKID 496
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 139/343 (40%), Gaps = 45/343 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + + +AG I++ D MRS+ ++V Y A+L
Sbjct: 321 PDVYTYTILIDSFCKAGLIEQARSWFDEMRSIG---------------CSANVVTYTALL 365
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM-------EVMLACGKY--------N 109
+A ++ KQ A + ++ G P+ TY ++ E+ AC Y N
Sbjct: 366 HAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDN 425
Query: 110 LVYEFF--RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ +F+ K S PN + Y L++ L + K +A ++ M G + +Y L
Sbjct: 426 VGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDAL 485
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
C GK + A ++ K P V +YT LI A + A + +QM ++ C
Sbjct: 486 IDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSC 545
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+PN+VT M+ G ++A+KL M E KG P++ T+ ++D
Sbjct: 546 TPNVVTYTAMIDGLCRIGECQKALKLLSMMEE-----------KGCS-PNVVTYTALIDG 593
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ D ++ +M G N + +I AG ++
Sbjct: 594 LGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLD 636
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/283 (18%), Positives = 121/283 (42%), Gaps = 20/283 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V Y +L +++KQ ++ + ++G P+ + + ++ Y Y+
Sbjct: 140 PNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKL 199
Query: 115 FRKVQKSYIPNA-LAYKVLVNTLW--REGKTDEAVSAVEDMERRGIVGSAAL----YYDL 167
+++ P +AY + + ++ E + + ++ E + + S L +
Sbjct: 200 LKRMADCGCPPGYVAYNIFIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANF 259
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-C 226
ARCLC GK + A + + P +Y+ +I ++ ++ A +F +MK+
Sbjct: 260 ARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGV 319
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+P++ T I++ ++ + GL E+A F EM N + T+ +L A
Sbjct: 320 NPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSAN------------VVTYTALLHA 367
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
K+ ++ RM+ G N + ++ +AG+++
Sbjct: 368 YLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQ 410
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/275 (19%), Positives = 113/275 (41%), Gaps = 31/275 (11%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P + Y ++++A + ++ + A VL Q+ + P+ TY +++ + G+ +
Sbjct: 512 PTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKL 571
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ K PN + Y L++ L + GK D ++ M +G + Y L C+
Sbjct: 572 LSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCA 631
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTC 233
AG +EA + ++ + + Y ++Q I + + + P
Sbjct: 632 AGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQG-FSKKFIASLGLLEELESHGTVPIAPVY 690
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN---------------------------RE 266
+++ + + G EEA++L +EM E S+ +N E
Sbjct: 691 GLLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQALCLASQLEKAFELYSE 750
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDD-LELVY 300
+KG V+P++ F ++ +W++ L+L Y
Sbjct: 751 ITRKG-VVPELSVFVCLIKGLIKVNKWNEALQLCY 784
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 5/203 (2%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
V A L + +RR + +LK G +PS TY +++V+ G+ ++ + ++
Sbjct: 6 VAATAALRSSLRRACSSSSHTADPELKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKE 65
Query: 118 VQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
+ +S + + L +EG+ +A+ + ER L + L A
Sbjct: 66 MSESGFCMDKFTVGCFAQALCKEGRWSDALVMI---EREDFKLDTVLCTQMISGLMEASL 122
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCSPNLVTCNI 235
+EA+ + ++ + P VV+Y L+ L + I N MK C+PN N
Sbjct: 123 FDEAISFLHRMRCNSCIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNS 182
Query: 236 MVKAYLEHGLFEEAMKLFQEMAE 258
+V +Y + A KL + MA+
Sbjct: 183 LVHSYCNARDYPYAYKLLKRMAD 205
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 76/188 (40%), Gaps = 21/188 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V YR + AG + E ++ M+ K+ G Y +V+
Sbjct: 617 PNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQG---------------YCSVV 661
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-- 122
K++ + +L++L+ G P A YGL+++ G+ E +++ +
Sbjct: 662 QG--FSKKFIASLGLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSS 719
Query: 123 --IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
I + Y L+ L + ++A ++ R+G+V +++ L + L K EA
Sbjct: 720 LNITSKDMYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEA 779
Query: 181 LMQMDKIC 188
L IC
Sbjct: 780 LQLCYSIC 787
>gi|326513552|dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 137/327 (41%), Gaps = 29/327 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y + L AG I ++ V D + K+K G D+ Y+AV+
Sbjct: 201 PTVGTYTILVDGLSTAGDISKVESVFDEI----KRKNVAG-----------DVYFYSAVI 245
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
NA R A V + G +P+ TYG ++ G+ +Q +
Sbjct: 246 NAYCRAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVG 305
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + + +++ R G D+A+ MER GI Y LA LC + E+A
Sbjct: 306 HNQIIFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKL 365
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLE 242
+ + + + VSYT LI G++ A +F M+ S P++VT N+M+ Y++
Sbjct: 366 LHIMTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIK 425
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G EA + +EM +KKGLV PD+YT+ ++ + D +++
Sbjct: 426 SGSIREAERFKKEM-----------EKKGLV-PDVYTYAALVHGHCVNGKVDVALRLFEE 473
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
M G N + +I ++ G+ E
Sbjct: 474 MKQRGAKPNVVAYTALISGLAKEGRSE 500
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 3/179 (1%)
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ER +L D+ YN + R + E A +L + + G + + +Y ++ +
Sbjct: 333 VMERMGIQL--DVYTYNTLACGLCRVNRMEDAKKLLHIMTENGVESNYVSYTTLISIHSK 390
Query: 105 CGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G FR ++ K P+ + Y V+++ + G EA ++ME++G+V
Sbjct: 391 EGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYT 450
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y L C GK + AL +++ + KP VV+YT LI G + A ++ M
Sbjct: 451 YAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNM 509
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 68/152 (44%), Gaps = 1/152 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+E + V Y +++ + A + + ++ +G +PS TY ++++ + G
Sbjct: 374 VESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAE 433
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F ++++K +P+ Y LV+ GK D A+ E+M++RG + Y L L
Sbjct: 434 RFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGL 493
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLI 203
G+ EEA D + P Y+ L+
Sbjct: 494 AKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLV 525
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 99/246 (40%), Gaps = 24/246 (9%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG--KYNLVYEFF 115
+++N +++ R + A + +++ G + TY LACG + N + +
Sbjct: 309 IIFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYN-----TLACGLCRVNRMEDAK 363
Query: 116 R----KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ + N ++Y L++ +EG EA DME +G S Y +
Sbjct: 364 KLLHIMTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGY 423
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
+G EA ++ K P V +Y L+ +G + A +F +MK PN+
Sbjct: 424 IKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNV 483
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
V ++ + G EEA + + M GL PD ++ ++ + +
Sbjct: 484 VAYTALISGLAKEGRSEEAFQFYDNML-----------AAGLT-PDDTLYSMLVGSLHTD 531
Query: 291 KRWDDL 296
KR D++
Sbjct: 532 KRKDEI 537
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 92/228 (40%), Gaps = 24/228 (10%)
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
NA Y L++T R+ +++ME G+ + Y L L +AG +
Sbjct: 167 NACCYNPLLDTYTRQKNDARVAEVLKEMESGGVEPTVGTYTILVDGLSTAGDISKVESVF 226
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLEH 243
D+I + V Y+ +I A +GN++ A+ +F++ + N PN T ++ + +
Sbjct: 227 DEIKRKNVAGDVYFYSAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKI 286
Query: 244 GLFEEAMKLFQEMAEDS--------NHINREYDKKGLVIP---------------DIYTF 280
G E A L +M N + Y + G+V D+YT+
Sbjct: 287 GQIEAAEMLLTDMQLRGVGHNQIIFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTY 346
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
NT+ R +D + + M +G+ N + +I S+ G +
Sbjct: 347 NTLACGLCRVNRMEDAKKLLHIMTENGVESNYVSYTTLISIHSKEGDM 394
>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Brachypodium distachyon]
Length = 686
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 131/289 (45%), Gaps = 14/289 (4%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
V+YN ++N + EGAF + QQ+K + +P TY ++ + + ++ +
Sbjct: 364 VIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIE 423
Query: 118 VQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
++K+ + P+ + L++ R G+ ++ + DM+ +G+ + Y + C GK
Sbjct: 424 MEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGK 483
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNI 235
EA+ +D + P Y +I A ++ G+ A + +MK+ P++VT N+
Sbjct: 484 ILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNL 543
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
++K + EA +L + R Y GL PD+ ++NT++ AC D
Sbjct: 544 LIKGLCKQSQISEAEELLDSL--------RNY---GLA-PDVISYNTLISACCYRSNTDR 591
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI 344
+ K M G+ + + + + AG+V +E ++ + D +
Sbjct: 592 ALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVV 640
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 133/300 (44%), Gaps = 29/300 (9%)
Query: 7 TVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNA 66
TV Y ++ Q G ++ F + M+S + PD + YNA++N
Sbjct: 363 TVIYNTLINGYCQIGDLEGAFSIFQQMKSR---------------LIRPDHITYNALING 407
Query: 67 CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIPN 125
+ ++ A ++ ++++ G PS T+ +++ G+ + +Q K PN
Sbjct: 408 LGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPN 467
Query: 126 ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMD 185
++Y +VN + GK EAV+ ++DM + ++ A +Y + G ++A M +
Sbjct: 468 VVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAE 527
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHG 244
K+ P +V+Y LI+ I A + + ++N+ +P++++ N ++ A
Sbjct: 528 KMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRS 587
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
+ A++L +EM K + P T+ + + R ++E +Y++ML
Sbjct: 588 NTDRALELEKEMW------------KCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQML 635
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/326 (21%), Positives = 134/326 (41%), Gaps = 29/326 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ +Y + L +AG + + D M P+K + P+ + YN ++
Sbjct: 186 PNAFSYNVVIAGLWKAGTDCDAVKLFDEM---PEKA------------VVPNHITYNTMI 230
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ +++ E F + Q+ + G KP+ TY +++ + G+ ++ + +
Sbjct: 231 DGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMV 290
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y +L + R G + +S E+ ++G+ A L LC GK +A
Sbjct: 291 PDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEV 350
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+ + V Y LI G+++ A IF QMK+ P+ +T N ++ +
Sbjct: 351 LQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGK 410
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
EA L EM + N +N P + TFNT++DA + + ++
Sbjct: 411 VERITEAHDLVIEM--EKNGVN----------PSVETFNTLIDAYGRAGQLEKCFIILSD 458
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV 328
M GL N + ++ + GK+
Sbjct: 459 MQEKGLKPNVVSYGSIVNAFCKNGKI 484
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/304 (20%), Positives = 125/304 (41%), Gaps = 26/304 (8%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNL 110
R PD +N + ACV + A +L+++ G P+A +Y +V+ + G
Sbjct: 147 RARPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAGLWKAGTDCD 206
Query: 111 VYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
+ F ++ +K+ +PN + Y +++ ++G + M R G+ + Y L
Sbjct: 207 AVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLS 266
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSP 228
LC AG+ E +D++ P +Y+ L +G+ Q +F + +K
Sbjct: 267 GLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKI 326
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKG--------- 271
TC+I++ + G +A ++ Q + N + Y + G
Sbjct: 327 GAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIF 386
Query: 272 ------LVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRA 325
L+ PD T+N +++ +R + + M +G++ + + +I RA
Sbjct: 387 QQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRA 446
Query: 326 GKVE 329
G++E
Sbjct: 447 GQLE 450
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 118/289 (40%), Gaps = 22/289 (7%)
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV--QKSYIPNA 126
R GAF +L + +P T+ ++ + G + R++ + PNA
Sbjct: 132 RHADVRGAFELLVAARA---RPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNA 188
Query: 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK 186
+Y V++ LW+ G +AV ++M + +V + Y + G E +
Sbjct: 189 FSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQ 248
Query: 187 ICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGL 245
+ + KP V++Y L+ +G + A + ++M + P+ T +I+ + G
Sbjct: 249 MLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGD 308
Query: 246 FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
+ + LF+E KKG+ I YT + +L+ + + E V + +++
Sbjct: 309 SQTMLSLFEESV-----------KKGVKI-GAYTCSILLNGLCKDGKISKAEEVLQTLVN 356
Query: 306 HGLHFNAKRHLRMILDASRAGKVE----LLEITWEHLARADRITPPALI 350
GL + +I + G +E + + L R D IT ALI
Sbjct: 357 SGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALI 405
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 16/176 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V+Y SI + G I E ++D M F L P VYNA++
Sbjct: 466 PNVVSYGSIVNAFCKNGKILEAVAILDDM-------FIKDVL--------PGAQVYNAII 510
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+A + + AF + +++K G PS TY L+++ + + + E ++
Sbjct: 511 DAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLA 570
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
P+ ++Y L++ TD A+ ++M + GI S Y L L AG+ E
Sbjct: 571 PDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHE 626
>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 743
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 140/330 (42%), Gaps = 52/330 (15%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ-GQKPSATTYGLVMEVMLACGKYNLVYEF 114
D+ +N ++N + E A +L+++ + P TY +++ M G+ + V +
Sbjct: 203 DVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDNVTYNTILKAMSKKGRLSDVKDL 262
Query: 115 FRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++++ +PN + Y LV + G EA VE M++ I+ Y L +C+
Sbjct: 263 LLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNILPDLCTYNILINGVCN 322
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--------- 224
AG E L MD + + +P VV+Y LI C + G A + QM+N
Sbjct: 323 AGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGLSLEAKKLMEQMENDGVKPNQVT 382
Query: 225 -------FC---------------------SPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
C SP++VT + ++KAYL+ G A+++ +EM
Sbjct: 383 HNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREM 442
Query: 257 AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316
+ KG+ + I T NT+LDA E++ D+ + G + +
Sbjct: 443 GQ-----------KGIKMNTI-TLNTILDALCKERKVDEAHNLLDSAHKRGYIVDEVTYG 490
Query: 317 RMILDASRAGKVELLEITWEHLARADRITP 346
+I+ R KVE W+ + R +ITP
Sbjct: 491 TLIMGYFREEKVEKAFEMWDEMKRI-KITP 519
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 114/243 (46%), Gaps = 15/243 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDIV Y+ ++ A ++ GA +++++ Q+G K + T +++ + K + +
Sbjct: 414 PDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNL 473
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K YI + + Y L+ +RE K ++A ++M+R I + + L LC
Sbjct: 474 LDSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCH 533
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVT 232
GK E A+ + D++ + P ++ +I G ++ A +N+ +K+ P+ T
Sbjct: 534 HGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYT 593
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
CNI++ + G+ E+A+ F + + RE D T+NTM+ A +K+
Sbjct: 594 CNILLNGLCKEGMTEKALNFFNTLITE-----REV--------DTVTYNTMISAFCKDKK 640
Query: 293 WDD 295
+
Sbjct: 641 LKE 643
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 138/331 (41%), Gaps = 43/331 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPK--------------KKFKTGTLE 47
P+ V Y ++ + G +KE F +++ M+ LP + G LE
Sbjct: 273 PNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNILPDLCTYNILINGVCNAGSIREG-LE 331
Query: 48 RWDP----RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
D +L+PD+V YN +++ C A +++Q++ G KP+ T+ + ++ +
Sbjct: 332 LMDVMKSLKLQPDVVTYNTLIDGCFELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLC 391
Query: 104 ACGKYNLVYEFFRKVQK-----SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
K E RKV++ + P+ + Y L+ + G A+ + +M ++GI
Sbjct: 392 KEEKRE---EVTRKVKELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIK 448
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
+ + LC K +EA +D K V+Y LI ++ A +
Sbjct: 449 MNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEM 508
Query: 219 FNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI 277
+++MK +P + T N ++ HG E AM+ F E+AE ++PD
Sbjct: 509 WDEMKRIKITPTVTTFNSLIGGLCHHGKTELAMEKFDELAESG------------LLPDD 556
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
TFN+++ E R + Y + H
Sbjct: 557 CTFNSIILGYCKEGRVEKAFEFYNESIKHSF 587
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 135/305 (44%), Gaps = 37/305 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y +I + + G + ++ D++ M+ + G L P+ V YN ++
Sbjct: 238 PDNVTYNTILKAMSKKGRLSDVKDLLLDMK-------RNG--------LVPNRVTYNNLV 282
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + AF +++ +KQ P TY +++ + G E ++ +
Sbjct: 283 YGYCKLGSLKEAFQIVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQ 342
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ + G + EA +E ME G+ + + + LC K EE +
Sbjct: 343 PDVVTYNTLIDGCFELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRK 402
Query: 184 MDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ ++ ++ P +V+Y LI+A L G++ A + +M + N +T N ++ A
Sbjct: 403 VKELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALC 462
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR-------WD 294
+ +EA L DS H K+G ++ ++ T+ T++ E++ WD
Sbjct: 463 KERKVDEAHNLL-----DSAH------KRGYIVDEV-TYGTLIMGYFREEKVEKAFEMWD 510
Query: 295 DLELV 299
+++ +
Sbjct: 511 EMKRI 515
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 19/217 (8%)
Query: 90 PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSA 148
PS + + + L GK ++ + F+K+ + + PN L L+ L R + SA
Sbjct: 129 PSKALFDIALSAYLHAGKPHVALQVFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSIASA 188
Query: 149 VE---DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVAN-KPLVVSYTGLIQ 204
E DM + G+ + L C GK E+AL ++++ N P V+Y +++
Sbjct: 189 REVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDNVTYNTILK 248
Query: 205 ACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
A G + + + MK N PN VT N +V Y + G +EA ++ + M
Sbjct: 249 AMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELM------- 301
Query: 264 NREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELV 299
K+ ++PD+ T+N +++ C A + LEL+
Sbjct: 302 -----KQTNILPDLCTYNILINGVCNAGSIREGLELM 333
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 15/153 (9%)
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL---DSGNIQNAA 216
S AL+ AGK AL K+ ++ KP +++ L+ + S +I +A
Sbjct: 130 SKALFDIALSAYLHAGKPHVALQVFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSIASAR 189
Query: 217 YIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
+F+ M K S ++ T N++V Y G E+A+ + + M + N V P
Sbjct: 190 EVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFN-----------VNP 238
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
D T+NT+L A + + R D++ + M +GL
Sbjct: 239 DNVTYNTILKAMSKKGRLSDVKDLLLDMKRNGL 271
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 18/140 (12%)
Query: 41 FKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
F T ER E D V YN +++A + K+ + A+ +L +++++ +P TY ++
Sbjct: 614 FNTLITER-----EVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKRLEPDRFTYNSIIT 668
Query: 101 VMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVS-AVEDMERRGIVG 159
++ GK + E +K + + L E + + A S + E+++ I
Sbjct: 669 SLMEDGKLSEADELLKKFSGK-------FGSMKRNLHLETEKNPATSESKEELKTEAIA- 720
Query: 160 SAALYYDLARCLCSAGKCEE 179
Y D+ LCS G+ +E
Sbjct: 721 ----YSDVINELCSRGRLKE 736
>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
Length = 751
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 129/283 (45%), Gaps = 27/283 (9%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R P++V YN V+ A + K+ + AF +L+ + +G +P+ TY +V+ + G+
Sbjct: 233 RCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEET 292
Query: 112 YEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
++ +K + P+ + Y LVN + G +A+ +M R G+ Y L
Sbjct: 293 SGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINT 352
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
+C AG A+ D++ +P V+YT LI G + A I+++M ++ P
Sbjct: 353 MCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPT 412
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMA------------------------EDSNHINR 265
+VT N ++ + G EEA+ L + M + + +N
Sbjct: 413 IVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNA 472
Query: 266 EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
E +KG V PD T+++++ ++R ++ +++ ML+ L
Sbjct: 473 EMVEKG-VSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSL 514
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 118/292 (40%), Gaps = 50/292 (17%)
Query: 55 PDIVVYNAVLNACVR-RKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
P ++ YNA+L++ VR RK A V +++ G + +Y +++ A G +
Sbjct: 165 PGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLR 224
Query: 114 FFRKVQKSYI------------------------------------PNALAYKVLVNTLW 137
FF +++++ PN L Y +++N L
Sbjct: 225 FFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLC 284
Query: 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV 197
R G+ +E + +M+R+G Y L C G +AL+ ++ + P VV
Sbjct: 285 RVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVV 344
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+YT LI +GN+ A F+QM PN VT ++ + + G +EA +++ EM
Sbjct: 345 TYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEM 404
Query: 257 AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
P I T+N +L+ R ++ + + M GL
Sbjct: 405 IRSG------------FPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGL 444
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/350 (22%), Positives = 137/350 (39%), Gaps = 69/350 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y + L + G I+E V+ M +K F PD V YN ++
Sbjct: 271 PNLLTYNMVINGLCRVGRIEETSGVLAEM---DRKGFA------------PDGVTYNTLV 315
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
N + + A + ++ + G P TY ++ M G N EFF ++ +
Sbjct: 316 NGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLR 375
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL-- 181
PN + Y L+N ++G DEA ++M R G + Y L C +G+ EEA+
Sbjct: 376 PNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGL 435
Query: 182 --------------------------------MQMD-KICKVANKPLVVSYTGLIQACLD 208
QM+ ++ + P ++Y+ LIQ +
Sbjct: 436 LRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCE 495
Query: 209 SGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
+ A +F +M N P+ T ++ Y + G EA+ L EM
Sbjct: 496 QRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMI---------- 545
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDD-----LELVYKRMLHHGLHFNA 312
KKG +PD T+N +++ + R + L+L Y + +G+ ++
Sbjct: 546 -KKGF-LPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDT 593
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/337 (21%), Positives = 139/337 (41%), Gaps = 49/337 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERW--- 49
P+ V Y S+ Q G + E + + D M +L +G +E
Sbjct: 376 PNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGL 435
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L PD+V Y+ ++ R ++ + AF + ++ ++G P A TY +++ +
Sbjct: 436 LRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCE 495
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
+ N + F++ + KS +P+ Y L+N +EG +EA++ ++M ++G +
Sbjct: 496 QRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVT 555
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD--------------- 208
Y L L + EA + K+ + P ++Y LI++C D
Sbjct: 556 YNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCM 615
Query: 209 SGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
G + A +F M K PN N+++ + G +A KL++EM +
Sbjct: 616 KGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFG------- 668
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
IP T ++ A +E + L LV + +L
Sbjct: 669 -----FIPHTVTIIALVKALYSEGMDEQLNLVIRDIL 700
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 103/247 (41%), Gaps = 27/247 (10%)
Query: 91 SATTYGLVMEVMLACGKYNLVYEFFRKVQ----KSYIPNALAYKVLVNTLWREGKTDEAV 146
S+ + LV++ +C N + + V ++P L+Y +++++ R K V
Sbjct: 131 SSAVFDLVVK---SCSYLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRK---PV 184
Query: 147 SAVEDMERRGIVGSAAL----YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGL 202
E + R I +L Y L R C+AG E L +++ + P VV+Y +
Sbjct: 185 IFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTV 244
Query: 203 IQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSN 261
I A I A + M PNL+T N+++ G EE + EM
Sbjct: 245 IGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEM----- 299
Query: 262 HINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILD 321
D+KG PD T+NT+++ + +++ ML +GL + + +I
Sbjct: 300 ------DRKGFA-PDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINT 352
Query: 322 ASRAGKV 328
+AG +
Sbjct: 353 MCKAGNL 359
Score = 42.0 bits (97), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 84/187 (44%), Gaps = 18/187 (9%)
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVAN-KPLVVSYTGLIQACLDSGN-IQNAAY 217
S++ +DL CS E + + + K+ P V+SY ++ + + + A
Sbjct: 130 SSSAVFDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEK 189
Query: 218 IFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
++ +M + S N+ + NI+++ + G E ++ F+EM ++ +P+
Sbjct: 190 VYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEM------------ERNRCLPN 237
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWE 336
+ T+NT++ A KR D+ + + M GL N + +I R G++E T
Sbjct: 238 VVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEE---TSG 294
Query: 337 HLARADR 343
LA DR
Sbjct: 295 VLAEMDR 301
>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 84/361 (23%), Positives = 143/361 (39%), Gaps = 77/361 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + T G+ ++++ +++ M S G+ PDI YN +L
Sbjct: 43 PDITTYSYLVETFGKLNRLEKVSELLKEMES-------GGSF--------PDITSYNVLL 87
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
A + + A V +Q++ G P+A TY +++ + G+Y+ V + F +++ S
Sbjct: 88 EAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTE 147
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDM------------------------------- 152
PNA Y +L+N G E V+ DM
Sbjct: 148 PNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKI 207
Query: 153 ----ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+G+V S+ Y + A EEAL+ + + +V +KP V +Y LIQ
Sbjct: 208 LLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAK 267
Query: 209 SGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM----------- 256
G + + I +M ++ + N T N +++A+ + G FEEA+K + EM
Sbjct: 268 GGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQT 327
Query: 257 -------------AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
E+S E G ++P + + ML A RWDD + M
Sbjct: 328 LEAVLSVYCFAGLVEESEEQFGEIKALG-ILPSVMCYCMMLAVYAKADRWDDAHQLLDEM 386
Query: 304 L 304
Sbjct: 387 F 387
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 130/311 (41%), Gaps = 50/311 (16%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV----------- 101
++ DIV YN +L+AC RR + A V + + + G P TTY ++E
Sbjct: 6 IQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVS 65
Query: 102 -----MLACG------KYNLVYE-------------FFRKVQKSY-IPNALAYKVLVNTL 136
M + G YN++ E FR++Q + +PNA Y +L+N
Sbjct: 66 ELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLY 125
Query: 137 WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV 196
R G+ D+ +M+ +AA Y L G +E + + + +P +
Sbjct: 126 GRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNM 185
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
+Y GLI AC G ++A I M + P+ +++AY + L+EEA+ F
Sbjct: 186 ETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNT 245
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
M E + P + T+N+++ A + + E + +M G+ N +
Sbjct: 246 MNEVGSK------------PTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARN-RDT 292
Query: 316 LRMILDASRAG 326
+++A R G
Sbjct: 293 FNGVIEAFRQG 303
>gi|449505568|ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Cucumis sativus]
Length = 614
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 2/206 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
LEPD++ Y A + A R K + VL Q++ +G KP+ T+ ++M + + N
Sbjct: 365 LEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQINEAL 424
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ + K++K +P++ Y L+ L + G+ + VEDME++G+ Y L C
Sbjct: 425 KVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCA 484
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C+ + E AL + K+ +V+ KP + +Y L++ ++ ++ + M KN S
Sbjct: 485 CAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKNDVSIEA 544
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEM 256
T I+V+ E+G A F EM
Sbjct: 545 GTYAILVRGLCENGKLHLACSFFGEM 570
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/360 (19%), Positives = 149/360 (41%), Gaps = 78/360 (21%)
Query: 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACV 68
+Y S+ LG+A + + +++++D M L G++ + + V+
Sbjct: 232 SYNSMVDILGKAKNFRLMWELVDEMNHL------AGSV---------SLETMSKVIRRLA 276
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALA 128
R + + A + +++ G T ++M+ ++ + FR+++ S N +
Sbjct: 277 RAGRHQEAIHAFRNIEKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLAS 336
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
+ VL++ + K DEA + ++E+ G+
Sbjct: 337 FNVLIHGYCKAKKLDEAWKIMGEVEKSGL------------------------------- 365
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFE 247
+P V+SYT I+A + +N + QM++ C PN++T I++ A +
Sbjct: 366 ----EPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQIN 421
Query: 248 EAMKLFQEMAE------------------------DSNHINREYDKKGLVIPDIYTFNTM 283
EA+K++++M + D I + +K+G V PD+ T+NT+
Sbjct: 422 EALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQG-VTPDVLTYNTL 480
Query: 284 LD-ACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARAD 342
+ ACA + L L+ K M + K + ++ R ++++L+ +H+ + D
Sbjct: 481 ISCACAHSQEETALTLLLK-MEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKND 539
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 18/200 (9%)
Query: 112 YEFFR--KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL--YYDL 167
Y F+ K Q Y + +Y +V+ L + V++M + GS +L +
Sbjct: 214 YGIFKWAKDQIPYRHSPESYNSMVDILGKAKNFRLMWELVDEMNH--LAGSVSLETMSKV 271
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227
R L AG+ +EA+ I K + L+ A + ++++A +F ++K
Sbjct: 272 IRRLARAGRHQEAIHAFRNIEKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSIP 331
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
NL + N+++ Y + +EA K+ E+ +K GL PD+ ++ ++A
Sbjct: 332 FNLASFNVLIHGYCKAKKLDEAWKIMGEV-----------EKSGLE-PDVISYTAFIEAH 379
Query: 288 AAEKRWDDLELVYKRMLHHG 307
EK + +++ V +M H G
Sbjct: 380 CREKDFRNVDKVLVQMEHKG 399
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 16/155 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD+ Y S+ LG+AG + ++ ++++ M K G + PD++ YN ++
Sbjct: 437 PDSSFYSSLIFILGKAGRLTDVKEIVEDME-------KQG--------VTPDVLTYNTLI 481
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ Q E A +L ++++ KP TY ++++ + ++ + K+ +
Sbjct: 482 SCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKNDVS 541
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
A Y +LV L GK A S +M + +V
Sbjct: 542 IEAGTYAILVRGLCENGKLHLACSFFGEMLSKAMV 576
>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 618
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 64/348 (18%), Positives = 157/348 (45%), Gaps = 31/348 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T+ + ++ G + E ++D M + + P++V N ++
Sbjct: 137 PNTITFSTLINGFCLEGRVSEAVALVDRMVEM---------------KYRPNVVTVNTLI 181
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + + A ++ ++ + G + + TYG V+ M G L + FRK+++ I
Sbjct: 182 NGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIK 241
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y +++++L ++G D+A+S +ME +GI Y + LC+ G+ ++
Sbjct: 242 ASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKM 301
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ ++ P VV+++ LI + G + A ++N+M +P+ +T + ++ + +
Sbjct: 302 LREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCK 361
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
EA ++ M P+I T++ ++++ KR D+ ++
Sbjct: 362 ENRLGEANQMLDLMVSKGCE------------PNIVTYSILINSYCKAKRVDNGMRLFCE 409
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
+ GL + + ++ ++GK+ + + ++ + R PP+++
Sbjct: 410 ISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEM--VSRGVPPSVV 455
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 120/254 (47%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT+ Y S+ + + E ++D M S EP+IV Y+ ++
Sbjct: 347 PDTITYSSLIDGFCKENRLGEANQMLDLMVS---------------KGCEPNIVTYSILI 391
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N+ + K+ + + ++ +G TY +++ GK N+ E F++ V +
Sbjct: 392 NSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVP 451
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y +L++ L G+ +A+ E M++ ++ +Y + +C+A K ++A
Sbjct: 452 PSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSL 511
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ KP V++Y +I G++ A +F +MK + C+P+ T NI+++A+L
Sbjct: 512 FCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLG 571
Query: 243 HGLFEEAMKLFQEM 256
+++L +EM
Sbjct: 572 GSGVISSVELIEEM 585
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 121/258 (46%), Gaps = 14/258 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+E ++ N ++N R+++ AF V+ + + G +P+ T+ ++ G+ +
Sbjct: 100 IEHNMYTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAV 159
Query: 113 EFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
R V+ Y PN + L+N L +G+ EA+ ++ M + G + Y + +
Sbjct: 160 ALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRM 219
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C +G AL K+ + + K VV Y+ +I + GN+ +A +FN+M+ ++
Sbjct: 220 CKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADV 279
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
V + ++ G +++ K+ +EM I R +IP++ TF+ ++D E
Sbjct: 280 VAYSSIIGGLCNDGRWDDGAKMLREM------IGRN------IIPNVVTFSALIDVFVKE 327
Query: 291 KRWDDLELVYKRMLHHGL 308
+ + + +Y M+ G+
Sbjct: 328 GKLLEAKELYNEMVARGI 345
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 105/236 (44%), Gaps = 14/236 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++ +V Y+ V+++ + + A + +++ +G K Y ++ + G+++
Sbjct: 240 IKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGA 299
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ R+ + ++ IPN + + L++ +EGK EA +M RGI Y L
Sbjct: 300 KMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGF 359
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
C + EA +D + +P +V+Y+ LI + + + N +F ++ + +
Sbjct: 360 CKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADT 419
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
VT N +V+ + + G A +LFQEM V P + T+ +LD
Sbjct: 420 VTYNTLVQGFCQSGKLNVAKELFQEMVSRG------------VPPSVVTYGILLDG 463
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 113/257 (43%), Gaps = 18/257 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA---CGKYNLV 111
P++V ++A+++ V+ + A + ++ +G P TY +++ G+ N +
Sbjct: 312 PNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQM 371
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ V K PN + Y +L+N+ + + D + ++ +G+V Y L +
Sbjct: 372 LDLM--VSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGF 429
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C +GK A ++ P VV+Y L+ D+G +Q A IF +M K+ +
Sbjct: 430 CQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGI 489
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
NI++ ++A LF ++ KG V PD+ T+N M+ +
Sbjct: 490 GIYNIIIHGMCNASKVDDAWSLFCSLS-----------VKG-VKPDVLTYNVMIGGLCKK 537
Query: 291 KRWDDLELVYKRMLHHG 307
+ ++++++M G
Sbjct: 538 GSLSEADMLFRKMKEDG 554
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 81/202 (40%), Gaps = 24/202 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHI---KELFDVIDSMRSLPKKKFKTGTL--------------- 46
DTV Y ++ Q+G + KELF + S R +P G L
Sbjct: 417 ADTVTYNTLVQGFCQSGKLNVAKELFQEMVS-RGVPPSVVTYGILLDGLCDNGELQKALE 475
Query: 47 ---ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
+ R+ I +YN +++ + + A+ + L +G KP TY +++ +
Sbjct: 476 IFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLC 535
Query: 104 ACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G + FRK+++ P+ Y +L+ +V +E+M+ RG A+
Sbjct: 536 KKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVELIEEMKMRGFAADAS 595
Query: 163 LYYDLARCLCSAGKCEEALMQM 184
+ + S G+ ++ + M
Sbjct: 596 -TIKMVVVMLSDGRLDKTFLDM 616
>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
Length = 816
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 133/310 (42%), Gaps = 27/310 (8%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+ PD +Y + +L G + D++ M + GT+ PD+V Y
Sbjct: 178 LGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMA-------EGGTV------CSPDVVAY 224
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQ 119
N V++ + A + +++ Q+G P TY V+ + + F R+ V
Sbjct: 225 NTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVN 284
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K +P+ Y L+ G+ EAV ++M R+ I+ L LC GK +E
Sbjct: 285 KGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKE 344
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A D + P V SYT ++ G + + +F+ M + +P + T N+++K
Sbjct: 345 ARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIK 404
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
AY G+ ++AM +F EM R++ K P + T+ T++ A + DD
Sbjct: 405 AYANCGMLDKAMIIFNEM--------RDHGVK----PHVVTYMTVIAALCRIGKMDDAME 452
Query: 299 VYKRMLHHGL 308
+ +M+ G+
Sbjct: 453 KFNQMIDQGV 462
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 77/363 (21%), Positives = 150/363 (41%), Gaps = 35/363 (9%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S PD VA ++ +L + G IKE DV D+M + PD+ Y
Sbjct: 321 SILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQN---------------PDVFSYT 365
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
+LN + + + G P T+ ++++ CG + F +++
Sbjct: 366 IMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDH 425
Query: 122 YI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ P+ + Y ++ L R GK D+A+ M +G+V Y+ L + C+ G +A
Sbjct: 426 GVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKA 485
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
+ +I + +V + +I G + +A IF+ N P+ V N+++
Sbjct: 486 KELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDG 545
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
Y G E+A+++F M + P++ + T+++ R D+ +
Sbjct: 546 YCLVGKMEKALRVFDAMVSAG------------IEPNVVGYGTLVNGYCKIGRIDEGLSL 593
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAG-----KVELLEITWEHLARADRITPPALIKERF 354
++ ML G+ + + +I AG KV+ E+T +A ++ T +++ F
Sbjct: 594 FREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIA-MNKCTYSIVLRGLF 652
Query: 355 CNR 357
NR
Sbjct: 653 KNR 655
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 124/295 (42%), Gaps = 24/295 (8%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
DIV + +++N + + A + G P A Y ++M+ GK F
Sbjct: 500 DIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVF 559
Query: 116 RKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ + I PN + Y LVN + G+ DE +S +M ++GI S LY + L A
Sbjct: 560 DAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEA 619
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
G+ A ++ ++ + +Y+ +++ + A ++F +++ +++T
Sbjct: 620 GRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITL 679
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N M+ + EEA LF ++ + GLV P T++ M+ E
Sbjct: 680 NTMIAGMFQTRRVEEAKDLFASIS-----------RSGLV-PCAVTYSIMITNLIKEGLV 727
Query: 294 DDLELVYKRMLHHGLHFNAK------RHLRMILDASRAG----KVELLEITWEHL 338
++ E ++ M + G +++ R L + RAG K++ + EHL
Sbjct: 728 EEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHL 782
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 87/189 (46%), Gaps = 16/189 (8%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL-M 182
P + Y +L++ R + + A++ + R G+ A + L + C A + +EAL +
Sbjct: 111 PTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDI 170
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK---NFCSPNLVTCNIMVKA 239
+ + ++ P V SY L+++ + G A + M CSP++V N ++
Sbjct: 171 LLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDG 230
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ + G +A LF+EM + + PD+ T+++++ A + D E
Sbjct: 231 FFKEGDVNKACDLFKEMVQRG------------IPPDLVTYSSVVHALCKARAMDKAEAF 278
Query: 300 YKRMLHHGL 308
++M++ G+
Sbjct: 279 LRQMVNKGV 287
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/263 (20%), Positives = 107/263 (40%), Gaps = 18/263 (6%)
Query: 51 PR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
PR L P Y +++ C R + E A QL + G + A +++ + +
Sbjct: 106 PRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTD 165
Query: 110 LVYEFF--RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS--AALYY 165
+ R + +P+ +Y +L+ +L +GK+ +A + M G V S Y
Sbjct: 166 EALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYN 225
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN- 224
+ G +A ++ + P +V+Y+ ++ A + + A QM N
Sbjct: 226 TVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNK 285
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
P+ T N ++ Y G ++EA+++F+EM S ++PD+ NT++
Sbjct: 286 GVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQS------------ILPDVVALNTLM 333
Query: 285 DACAAEKRWDDLELVYKRMLHHG 307
+ + + V+ M G
Sbjct: 334 GSLCKYGKIKEARDVFDTMAMKG 356
>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Cucumis sativus]
gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Cucumis sativus]
Length = 834
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 136/298 (45%), Gaps = 15/298 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPD+V YN ++N R + E A +L+Q ++G P+ TY ++ G+Y +
Sbjct: 345 EPDLVTYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATD 404
Query: 114 FFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ ++ S + + ++Y L++ L G+ D A++ + M RGI+ A +Y L L
Sbjct: 405 YLIEMSTSGLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLF 464
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
GK A + + ++ P Y L+ + GN+ A +F + + P +V
Sbjct: 465 KKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVV 524
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
N+M+K + + G+ + A+ +M ++ +PDI+TF+T++D +
Sbjct: 525 GYNVMIKGFSKSGMMDNAILCIDKM------------RRAHHVPDIFTFSTIIDGYVKQH 572
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPAL 349
+ + ++ M+ N + +I R G+ ++ E + + R+ + P +
Sbjct: 573 NMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFS-MMRSHGLKPSVV 629
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 1/130 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+P +V YN ++ + + A + ++++ P T+ +++ + N V
Sbjct: 519 LDPGVVGYNVMIKGFSKSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVL 578
Query: 113 EFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F V+++ PN + Y L+N R+G+T A M G+ S Y L
Sbjct: 579 KIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLKPSVVTYSILIGSF 638
Query: 172 CSAGKCEEAL 181
C K +A+
Sbjct: 639 CKEAKLGKAV 648
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 66/173 (38%), Gaps = 15/173 (8%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+P++V Y +++N R+ + + A + ++ G KPS TY +++ K
Sbjct: 590 KPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLKPSVVTYSILIGSFCKEAKLGKAVS 649
Query: 114 FFR-KVQKSYIPNALAYKVLVNTLWREGKT----------DEAVSAVEDMERR----GIV 158
+F + PN A+ LVN T + + S ED R G
Sbjct: 650 YFELMLINKCTPNDAAFHYLVNGFTNTKATAVSREPNNLHENSRSMFEDFFSRMIGDGWT 709
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
AA Y + CLC + AL +K+ VS+ LI GN
Sbjct: 710 QKAAAYNCILICLCQQRMVKTALQLRNKMLAFGLCSDAVSFVALIHGICLEGN 762
>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
Length = 457
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 129/284 (45%), Gaps = 14/284 (4%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D +P++V Y ++L+ + + + A + ++ +G P Y ++++ G
Sbjct: 112 EMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKG 171
Query: 107 KYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
Y F + ++K IP Y L++ R+G+ S +DM R+G V + +
Sbjct: 172 DMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFN 231
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KN 224
+L C G EA ++ + P VVSY LI+ G A + +M ++
Sbjct: 232 NLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRS 291
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
P++V+ NI++ Y + G + A+KLF E+ K GL PD ++++T++
Sbjct: 292 GVGPDIVSYNILIDGYSKSGALDHAIKLFYEIP-----------KSGLE-PDAFSYSTII 339
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
D + +V+K M+ +G +A + +++ R ++
Sbjct: 340 DCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERL 383
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/326 (21%), Positives = 134/326 (41%), Gaps = 29/326 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T Y + +L QA +E V M + P++ Y+ ++
Sbjct: 50 PNTYTYGYLLRSLCQAQRFEEARSVFRGMAA---------------QGCSPNVFSYSILI 94
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYI 123
R ++ + A +L ++ G +P+ TYG ++ + GK + F R V +
Sbjct: 95 AGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCP 154
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y VL++ ++G EA E+M +G + + Y L G+
Sbjct: 155 PDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSL 214
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ + P + ++ L+ G++ A +F +M++ C P++V+ N +++
Sbjct: 215 FKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCS 274
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G EA +L +EM V PDI ++N ++D + D ++
Sbjct: 275 KGKPHEAQRLLREMIRSG------------VGPDIVSYNILIDGYSKSGALDHAIKLFYE 322
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV 328
+ GL +A + +I RAGKV
Sbjct: 323 IPKSGLEPDAFSYSTIIDCLCRAGKV 348
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/277 (20%), Positives = 117/277 (42%), Gaps = 14/277 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ Y +L + + +++E A V + + QG P+ +Y +++ + K + E
Sbjct: 50 PNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAEL 109
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ + + PN + Y L++ L + GK EAV M RG +Y L
Sbjct: 110 LNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSK 169
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G EA +++ + P V +Y L+ G +F M + C PN+ T
Sbjct: 170 KGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFT 229
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ + + G EA +LF EM PD+ ++NT++ ++ +
Sbjct: 230 FNNLLDGFCKMGDMVEAHRLFLEMRSLG------------CPPDVVSYNTLIRGMCSKGK 277
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + + + M+ G+ + + +I S++G ++
Sbjct: 278 PHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALD 314
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 94/225 (41%), Gaps = 48/225 (21%)
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
Q Y L+Y L+ L + G+ D DM G V + Y L R LC A + E
Sbjct: 10 QVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFE 69
Query: 179 EA-------------------------LMQMDKICKVA----------NKPLVVSYTGLI 203
EA L + K+ + A ++P VV+Y L+
Sbjct: 70 EARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLL 129
Query: 204 QACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNH 262
G ++ A +F++M C P+ V N+++ + + G EA +LF+EM E
Sbjct: 130 SGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLE---- 185
Query: 263 INREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
KG IP ++T+N++L + + + ++ ++K ML G
Sbjct: 186 -------KG-CIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQG 222
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/276 (18%), Positives = 107/276 (38%), Gaps = 22/276 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
PD V Y + + G + E + + + M SL + G R
Sbjct: 155 PDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSL 214
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ P+I +N +L+ + A + +++ G P +Y ++ M +
Sbjct: 215 FKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCS 274
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK + R++ +S + P+ ++Y +L++ + G D A+ ++ + G+ A
Sbjct: 275 KGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFS 334
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + CLC AGK A + + + P L+ + + +F M
Sbjct: 335 YSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMV 394
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
F C P + N+++ + ++ ++F E+ E
Sbjct: 395 KFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTE 430
>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 78/349 (22%), Positives = 150/349 (42%), Gaps = 30/349 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y ++ L + I E ++D M+S P V+YN ++
Sbjct: 220 PDGYTYCTLMDGLCKEERIDEAVLLLDEMQS---------------EGCSPSPVIYNVLI 264
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYI 123
+ ++ ++ + +G P+ TY ++ + GK + R V I
Sbjct: 265 DGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCI 324
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L+N L ++ + +AV + ME RG + +Y L L GK EEA+
Sbjct: 325 PNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSL 384
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
K+ + KP +V Y+ L+ G A I N+M + C PN T + ++K + +
Sbjct: 385 WRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFK 444
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
GL EEA+++++EM + N+ + ++ ++D R + +V+ +
Sbjct: 445 TGLCEEAVQVWKEMDKTGCSRNK------------FCYSVLIDGLCGVGRVKEAMMVWSK 492
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE-LLEITWEHLARADRITPPALI 350
ML G+ + + +I G ++ L++ E L + + + P ++
Sbjct: 493 MLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVV 541
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 135/308 (43%), Gaps = 32/308 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L G + + +++ M S + P+ V Y ++
Sbjct: 290 PNEVTYNTLIHGLCLKGKLDKAVSLLERMVS---------------SKCIPNDVTYGTLI 334
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N V++++ A +L ++++G + Y +++ + GK +RK+ +K
Sbjct: 335 NGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCK 394
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM- 182
PN + Y VLV+ L REGK +EA + M G + +A Y L + G CEEA+
Sbjct: 395 PNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQV 454
Query: 183 --QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
+MDK NK Y+ LI G ++ A ++++M P+ V + ++K
Sbjct: 455 WKEMDKTGCSRNK---FCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKG 511
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
G + A+KL+ EM + +E K PD+ T+N +LD +K +
Sbjct: 512 LCGIGSMDAALKLYHEM------LCQEEPKSQ---PDVVTYNILLDGLCMQKDISRAVDL 562
Query: 300 YKRMLHHG 307
ML G
Sbjct: 563 LNSMLDRG 570
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 111/235 (47%), Gaps = 21/235 (8%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RK 117
+Y+ +++ + + E A + +++ ++G KP+ Y ++++ + GK N E R
Sbjct: 364 IYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRM 423
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+ +PNA Y L+ ++ G +EAV ++M++ G + Y L LC G+
Sbjct: 424 IASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRV 483
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC------SPNLV 231
+EA+M K+ + KP V+Y+ +I+ G++ A ++++M C P++V
Sbjct: 484 KEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEM--LCQEEPKSQPDVV 541
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
T NI++ A+ L M ++R D PD+ T NT L+
Sbjct: 542 TYNILLDGLCMQKDISRAVDLLNSM------LDRGCD------PDVITCNTFLNT 584
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/309 (20%), Positives = 125/309 (40%), Gaps = 27/309 (8%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
V N ++N + + E +V+ P+ ++ LV++ + + E FR +
Sbjct: 154 VLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGM 213
Query: 119 -QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
++ +P+ Y L++ L +E + DEAV +++M+ G S +Y L LC G
Sbjct: 214 PERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDL 273
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIM 236
+D + P V+Y LI G + A + +M + C PN VT +
Sbjct: 274 TRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTL 333
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHIN------------------------REYDKKGL 272
+ ++ +A++L M E H+N R+ +KG
Sbjct: 334 INGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKG- 392
Query: 273 VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLE 332
P+I ++ ++D E + ++ + + RM+ G NA + ++ + G E
Sbjct: 393 CKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAV 452
Query: 333 ITWEHLARA 341
W+ + +
Sbjct: 453 QVWKEMDKT 461
>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 132/280 (47%), Gaps = 14/280 (5%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R+E D+ +N ++N R ++ + AF VL ++ + G +P A T+ ++ + K+
Sbjct: 114 RIERDVFHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARA 173
Query: 112 YEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
EFF + V Y PN Y ++ + GKT AV ++ M++ G +Y +
Sbjct: 174 MEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDG 233
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPN 229
LC EAL +I +P V +Y+ L+ +S + A+ +FN+M + P+
Sbjct: 234 LCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPD 293
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+VT NI+V + G+ EA + + M E KG V P+ T+N++++
Sbjct: 294 VVTFNILVDKLCKEGMLSEAQGIIKIMIE-----------KG-VEPNYATYNSLMNGYCL 341
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + + +V+ M+ G N + +I +A +++
Sbjct: 342 QNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRID 381
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 113/268 (42%), Gaps = 38/268 (14%)
Query: 29 VIDSMRSLPKKKFKTGTLERWDPRL-EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG 87
+I + K G L++ D PDIV+YN +++ + + A + ++K +G
Sbjct: 195 IIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKG 254
Query: 88 QKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAV 146
+P TY ++M + + F ++ + +P+ + + +LV+ L +EG EA
Sbjct: 255 VRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQ 314
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
++ M +G+ + A Y L C K EA M D + P VVSY LI
Sbjct: 315 GIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGY 374
Query: 207 LDSGNIQNAAYIFNQMK---------NF---------------------------CSPNL 230
+ I A +F++M N+ CSP+L
Sbjct: 375 CKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDL 434
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
VTC I++ + + G + A++LF+ M +
Sbjct: 435 VTCTILLDSLCKLGYLDNALRLFRAMQD 462
>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 128/291 (43%), Gaps = 15/291 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDIV YN++++ + + + +Q+K P TY ++ + +EF
Sbjct: 89 PDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEF 148
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++ + + PN + Y ++ +EG EA+ DM R + + Y L C
Sbjct: 149 LHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCK 208
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
AG EAL +++I + K VV+YT L+ + G ++ A +F M N +PN T
Sbjct: 209 AGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQET 268
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+V +++ E A + +EM E + PD+ + T+L E R
Sbjct: 269 YTALVHGFIKAKEMEYAKDILKEMKEKC------------IKPDLLLYGTILWGLCNESR 316
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLARAD 342
++ +L+ + G++ NA + ++ ++G+ E L + E L D
Sbjct: 317 LEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVD 367
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 119/271 (43%), Gaps = 14/271 (5%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
NA+L+ + + + + + + G K S TY ++++ + G + F ++++
Sbjct: 25 NALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKE 84
Query: 121 S-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ + P+ + Y L++ + G DE + E M+ Y L C C + +
Sbjct: 85 AGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPK 144
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVK 238
A + ++ KP VV+Y+ I A G +Q A F M+ +PN T ++
Sbjct: 145 AFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLID 204
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
A + G EA+KL +E+ + +N + T+ +LD E R + E
Sbjct: 205 ANCKAGNLAEALKLVEEILQAGIKLN------------VVTYTALLDGLCEEGRMKEAEE 252
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
V++ ML+ G+ N + + ++ +A ++E
Sbjct: 253 VFRAMLNAGVAPNQETYTALVHGFIKAKEME 283
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 121/278 (43%), Gaps = 40/278 (14%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+ V Y ++ L + G +KE +V +M + + P+ Y A+++
Sbjct: 230 NVVTYTALLDGLCEEGRMKEAEEVFRAM---------------LNAGVAPNQETYTALVH 274
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
++ K+ E A +L+++K++ KP YG ++ + + ++++S I
Sbjct: 275 GFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINT 334
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMER-----------------------RGIVGSA 161
NA+ Y L++ ++ G+ EA++ +E+M +G++
Sbjct: 335 NAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCFEVAKKLFDEMLDKGMMPDK 394
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L G +EAL D++ ++ + + +YT LI SG +Q A + ++
Sbjct: 395 IAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDE 454
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
M P+ V ++K Y G +EA++L EMA+
Sbjct: 455 MIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAK 492
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 122/299 (40%), Gaps = 19/299 (6%)
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F K++K + P + L++ L + G+ D + +DM GI S Y + L
Sbjct: 7 ECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYL 66
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C G E A ++ + P +V+Y LI G + IF QMK+ C P++
Sbjct: 67 CKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDV 126
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T N ++ + + +A + EM K + P++ T++T +DA E
Sbjct: 127 ITYNALINCFCKFERMPKAFEFLHEM------------KANGLKPNVVTYSTFIDAFCKE 174
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLA---RADRITP 346
+ + M L N + +I +AG + E L++ E L + + +T
Sbjct: 175 GMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTY 234
Query: 347 PALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQL 405
AL+ + C K+ +++ V+ + E F K + +D L ++
Sbjct: 235 TALL-DGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEM 292
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 67/145 (46%), Gaps = 16/145 (11%)
Query: 23 IKELFDVIDSM-----RSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAF 77
++E+ D++D + + KK F E D + PD + Y A+++ ++ + A
Sbjct: 359 LEEMLDLVDGLCKNNCFEVAKKLFD----EMLDKGMMPDKIAYTALIDGNMKHGNLQEAL 414
Query: 78 WVLQQLKQQGQKPSATTYGLVMEVMLACGKY----NLVYEFFRKVQKSYIPNALAYKVLV 133
+ ++ + G + Y ++ + G+ NL+ E + K +P+ + Y L+
Sbjct: 415 NLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEM---IGKGVLPDEVVYMCLI 471
Query: 134 NTLWREGKTDEAVSAVEDMERRGIV 158
+ GK DEA+ +M +RG++
Sbjct: 472 KKYYALGKVDEALELQNEMAKRGMI 496
>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
Length = 661
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 140/320 (43%), Gaps = 29/320 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTL--ERWDPRLEPDIVVYNA 62
PD V + ++ L I E + M +TG+L + + L P ++ +N
Sbjct: 174 PDVVTFNTLLHGLCLEDRISEALALFGYM-------VETGSLFDQMVEIGLTPVVITFNT 226
Query: 63 VLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
++N C+ + E A V ++ +G TYG ++ M G K++++
Sbjct: 227 LINGLCLEGRVLEAAALV-NKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEET 285
Query: 122 YI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+I P+ + Y +++ L ++G +A +M +GI + Y + CS G+ +A
Sbjct: 286 HIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDA 345
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKA 239
+ + + P V+++ LI A + G + A + ++M + C P+ VT N M+
Sbjct: 346 QRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYG 405
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ +H F++A +F MA PD+ TFNT++D KR D+ +
Sbjct: 406 FCKHNRFDDAKHMFDLMAS----------------PDVVTFNTIIDVYCRAKRVDEGMQL 449
Query: 300 YKRMLHHGLHFNAKRHLRMI 319
+ + GL N + +I
Sbjct: 450 LREISRRGLVANTTTYNTLI 469
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 137/311 (44%), Gaps = 24/311 (7%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVME--VMLA 104
R+ +I +N ++ + + +L + G +P T+ GL +E + A
Sbjct: 136 RIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEA 195
Query: 105 CGKYNLVYE----FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ + E F + V+ P + + L+N L EG+ EA + V M +G+
Sbjct: 196 LALFGYMVETGSLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHID 255
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y + +C G + AL + K+ + KP VV Y+ +I G+ +A Y+F+
Sbjct: 256 VVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFS 315
Query: 221 QM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
+M + +PN+ T N M+ + G + +A +L ++M E RE + PD+ T
Sbjct: 316 EMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIE------REIN------PDVLT 363
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
FN ++ A E + + E + MLH + + + MI + + + + ++ +A
Sbjct: 364 FNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA 423
Query: 340 RADRITPPALI 350
D +T +I
Sbjct: 424 SPDVVTFNTII 434
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 70/382 (18%), Positives = 157/382 (41%), Gaps = 71/382 (18%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+ D V Y +I + + G K +++ M + ++PD+V+Y+A+
Sbjct: 253 HIDVVTYGTIVNGMCKMGDTKSALNLLSKME---------------ETHIKPDVVIYSAI 297
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSY 122
++ + A ++ ++ ++G P+ TY +++ + G+++ R +++
Sbjct: 298 IDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREI 357
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY------------YDLARC 170
P+ L + L++ +EGK EA ++M R I Y +D A+
Sbjct: 358 NPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKH 417
Query: 171 L-------------------CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
+ C A + +E + + +I + +Y LI + N
Sbjct: 418 MFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDN 477
Query: 212 IQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ--EMAE-DSNHINREY 267
+ A +F +M + P+ +TCNI++ + E+ EEA++LF+ +M++ D + +
Sbjct: 478 LNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNI 537
Query: 268 DKKGL--------------------VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
G+ V PD+ T+N M+ + D +++ +M +G
Sbjct: 538 IIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNG 597
Query: 308 LHFNAKRHLRMILDASRAGKVE 329
+ + +I +AG+++
Sbjct: 598 HEPDNSTYNTLIRGCLKAGEID 619
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/257 (18%), Positives = 96/257 (37%), Gaps = 55/257 (21%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PDTV Y S+ + + + D M S PD+V +N +
Sbjct: 393 FPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS-------------------PDVVTFNTI 433
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN-------------- 109
++ R K+ + +L+++ ++G + TTY ++ N
Sbjct: 434 IDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 493
Query: 110 ---------LVY------------EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVS 147
L+Y E F +Q S I + +AY ++++ + + K DEA
Sbjct: 494 CPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWD 553
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
+ G+ Y + C +A + K+ ++P +Y LI+ CL
Sbjct: 554 LFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCL 613
Query: 208 DSGNIQNAAYIFNQMKN 224
+G I + + ++M++
Sbjct: 614 KAGEIDKSIELISEMRS 630
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 96/257 (37%), Gaps = 38/257 (14%)
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA 191
++ R + D A+S ME R I + + L +C C K +L K+ K+
Sbjct: 112 VIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLG 171
Query: 192 NKPLVVSYTGLIQA-CLDS---------GNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAY 240
+P VV++ L+ CL+ G + +F+QM +P ++T N ++
Sbjct: 172 FQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGLTPVVITFNTLINGL 231
Query: 241 LEHGLFEEAMKLFQEMAEDSNHIN------------REYDKKGL-----------VIPDI 277
G EA L +M HI+ + D K + PD+
Sbjct: 232 CLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDV 291
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEI 333
++ ++D + D + ++ ML G+ N + MI G+ LL
Sbjct: 292 VIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRD 351
Query: 334 TWEHLARADRITPPALI 350
E D +T ALI
Sbjct: 352 MIEREINPDVLTFNALI 368
>gi|356513749|ref|XP_003525573.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
mitochondrial-like [Glycine max]
Length = 819
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 137/309 (44%), Gaps = 38/309 (12%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRS----LPKKKFKT--------GTL----- 46
+ D VAY + L G +++ ++++ M+S L K + T G L
Sbjct: 402 FLDGVAYNIVFDALCMLGKVEDAVEMVEEMKSKRLGLDVKHYTTLINGYCLQGDLVTAFN 461
Query: 47 ---ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
E + L+PDIV YN + R +L ++ QG KP++TT+ +++E +
Sbjct: 462 MFKEMKEKGLKPDIVTYNVLAAGLSRNGHARETVKLLDFMESQGMKPNSTTHKMIIEGLC 521
Query: 104 ACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
+ GK +F ++ N Y +VN ++ + +G + A
Sbjct: 522 SGGKVLEAEVYFNSLEDK---NIEIYSAMVNGYCETDLVKKSYEVFLKLLNQGDMAKKAS 578
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
+ L LC G E+A+ +D++ +P + Y+ ++ A +G+++NA +F+
Sbjct: 579 CFKLLSKLCMTGDIEKAVKLLDRMLLSNVEPSKIMYSKILAALCQAGDMKNARTLFDVFV 638
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
+ F +P++VT IM+ +Y +EA LFQ+M K+ + PD+ TF
Sbjct: 639 HRGF-TPDVVTYTIMINSYCRMNCLQEAHDLFQDM------------KRRGIKPDVITFT 685
Query: 282 TMLDACAAE 290
+LD E
Sbjct: 686 VLLDGSLKE 694
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 123/313 (39%), Gaps = 33/313 (10%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ Y V+ A ++ + V +++++ G P + + +E + + +L YE
Sbjct: 228 PNCYTYAIVIKALCKKGDLKQPLCVFEEMERVGVIPHSYCFAAYIEGLCNNHRSDLGYEV 287
Query: 115 FRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ +K P AY +V E K DEA +DMER+G+V +Y L C
Sbjct: 288 LQAFRKGNAPLEVYAYTAVVRGFCNEMKLDEAQGVFDDMERQGVVPDVYVYSSLIHGYCK 347
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNL--- 230
+ AL D++ K V + ++ CL G + + +Q K +
Sbjct: 348 SHNLLRALALHDEMISRGVKTNCVVVSCILH-CL--GEMGMTLEVVDQFKELKESGMFLD 404
Query: 231 -VTCNIMVKAYLEHGLFEEAMKLFQEMAE-----DSNH----IN---------------R 265
V NI+ A G E+A+++ +EM D H IN +
Sbjct: 405 GVAYNIVFDALCMLGKVEDAVEMVEEMKSKRLGLDVKHYTTLINGYCLQGDLVTAFNMFK 464
Query: 266 EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRA 325
E +KGL PDI T+N + + + + M G+ N+ H +I
Sbjct: 465 EMKEKGLK-PDIVTYNVLAAGLSRNGHARETVKLLDFMESQGMKPNSTTHKMIIEGLCSG 523
Query: 326 GKVELLEITWEHL 338
GKV E+ + L
Sbjct: 524 GKVLEAEVYFNSL 536
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 35/226 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKE---LFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
P + Y I L QAG +K LFDV + R PD+V Y
Sbjct: 609 PSKIMYSKILAALCQAGDMKNARTLFDVF---------------VHRG---FTPDVVTYT 650
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML---------ACGKYNL-- 110
++N+ R + A + Q +K++G KP T+ ++++ L + GK
Sbjct: 651 IMINSYCRMNCLQEAHDLFQDMKRRGIKPDVITFTVLLDGSLKEYLGKRFSSHGKRKTTS 710
Query: 111 --VYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
V R +++ I P+ + Y VL++ + +AVS + M G+ Y L
Sbjct: 711 LYVSTILRDMEQMKINPDVVCYTVLMDGHMKTDNFQQAVSLFDKMIESGLEPDTITYTAL 770
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQ 213
LC+ G E+A+ ++++ P V + L + + + +Q
Sbjct: 771 VSGLCNRGHVEKAVTLLNEMSSKGMTPDVHIISALKRGIIKARKVQ 816
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/200 (18%), Positives = 86/200 (43%), Gaps = 15/200 (7%)
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F+ ++ +P+ L L N L G+ D+A++ E ++R G + + Y + + LC
Sbjct: 183 LFQTRRRGILPDVLTCNFLFNRLVEHGEVDKALAVYEQLKRFGFIPNCYTYAIVIKALCK 242
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NLVT 232
G ++ L +++ +V P + I+ ++ + + +P +
Sbjct: 243 KGDLKQPLCVFEEMERVGVIPHSYCFAAYIEGLCNNHRSDLGYEVLQAFRKGNAPLEVYA 302
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEK 291
+V+ + +EA +F +M +++G V+PD+Y +++++ C +
Sbjct: 303 YTAVVRGFCNEMKLDEAQGVFDDM-----------ERQG-VVPDVYVYSSLIHGYCKSHN 350
Query: 292 RWDDLELVYKRMLHHGLHFN 311
L L + M+ G+ N
Sbjct: 351 LLRALAL-HDEMISRGVKTN 369
>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
Length = 913
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 137/282 (48%), Gaps = 29/282 (10%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
E ++V++N V+ C+ + A + + + +G +P A TY ++M + G+
Sbjct: 308 ELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVR 367
Query: 114 FFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R+++K + PN + Y +++++ + G D+ + +E+M +G+ ++ Y + LC
Sbjct: 368 LLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALC 427
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQMKNFCSPNLV 231
G+ +EA+ + ++ P + SY +I ++ ++ A ++F N ++ N +
Sbjct: 428 KDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGI 487
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQE-------------------MAEDSNHINR------E 266
T N ++ A L G +++A++L +E M +D N ++R E
Sbjct: 488 TYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGN-VDRSLVLLEE 546
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+KG + P+ ++N ++ E+R D + K+ML+ GL
Sbjct: 547 MAEKG-IKPNNVSYNILISELCKERRVRDALELSKQMLNQGL 587
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/264 (20%), Positives = 119/264 (45%), Gaps = 14/264 (5%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV- 118
YN ++ A + + + A ++Q+++ QG P +Y ++ + + F +
Sbjct: 419 YNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLL 478
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
++ + N + Y +++ L R+G+ +AV ++M G Y L + +C G +
Sbjct: 479 EEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVD 538
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMV 237
+L+ ++++ + KP VSY LI +++A + QM N +P++VT N ++
Sbjct: 539 RSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLI 598
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ G A+ L +++ ++ H PDI T+N ++ + DD
Sbjct: 599 NGLCKMGWMHAALNLLEKLHNENVH------------PDIITYNILISWHCKVRLLDDAA 646
Query: 298 LVYKRMLHHGLHFNAKRHLRMILD 321
++ R + +R ++++ D
Sbjct: 647 MLLNRAMAAVCPVGDRRIMQILPD 670
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/313 (21%), Positives = 123/313 (39%), Gaps = 60/313 (19%)
Query: 76 AFWVLQQLKQQ-GQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIP-NALAYKVL 132
A +L QL ++ G +PS +Y +V+ V+ + +R+ V + +P + V
Sbjct: 122 ALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVA 181
Query: 133 VNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVAN 192
L R G+ DEA++ + M R G V A LY + LC G EA ++++ +
Sbjct: 182 ARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGC 241
Query: 193 KPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSP----------------------- 228
V ++ +++ G ++ AA + ++ M C P
Sbjct: 242 AADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARA 301
Query: 229 --------NLVTCNIMVKAYLEHGLFEEAMKLFQEMA----------------------- 257
N+V N ++ L G EA +L++ M
Sbjct: 302 MLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGR 361
Query: 258 -EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316
+ + RE +KKG P++ T+ +L + WDD + + M GL N++ +
Sbjct: 362 IGSAVRLLREMEKKGFA-PNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYN 420
Query: 317 RMILDASRAGKVE 329
MI + G+++
Sbjct: 421 GMIYALCKDGRMD 433
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 76/342 (22%), Positives = 127/342 (37%), Gaps = 58/342 (16%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD V+Y V++A + A +L ++ G T+ V+ M G+
Sbjct: 208 PDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARL 267
Query: 115 F-RKVQKSYIPNALAYKVLVNTLWR-------------------------------EGKT 142
R + K +P + Y L+ L R EGK
Sbjct: 268 VDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKL 327
Query: 143 DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGL 202
EA E M +G A Y L LC G+ A+ + ++ K P VV+YT +
Sbjct: 328 AEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIV 387
Query: 203 IQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM----- 256
+ + +G + + +M + N N M+ A + G +EAM L QEM
Sbjct: 388 LHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGC 447
Query: 257 -------------------AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
E++ H+ ++G+V I T+NT++ A + RW D
Sbjct: 448 NPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGI-TYNTIIHALLRDGRWQDAV 506
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
+ K M+ HG + + +I + G V+ + E +A
Sbjct: 507 RLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMA 548
>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
Length = 662
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 132/305 (43%), Gaps = 29/305 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLP-----------KKKFKTGTLERWDPR- 52
PD V+Y ++ ++ + G ++E ++ ++S ++ E ++
Sbjct: 211 PDAVSYTTVVSSMCRLGKVEEARELSMRIKSFVPVYNALINGFCREHKMEEVFELFNEMA 270
Query: 53 ---LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
++PD++ Y+ V+N E A VL ++ +G P+ T+ +M+ G+
Sbjct: 271 VEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLC 330
Query: 110 LVYEFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
+ + R +Q+ PN +AY L++ L GK EAVS + MER G+ + Y L
Sbjct: 331 EALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLI 390
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CS 227
AG A +K+ P VV YT ++ + +A ++ M N C
Sbjct: 391 DGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCP 450
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
PN +T N +K G E AMK+ +M R+Y P++ T+N +LD
Sbjct: 451 PNTITFNTFIKGLCCSGKTEWAMKVLNQM--------RQYG----CAPNVTTYNEVLDGL 498
Query: 288 AAEKR 292
KR
Sbjct: 499 FNAKR 503
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/304 (21%), Positives = 132/304 (43%), Gaps = 34/304 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTG----TLER 48
PD + Y ++ TL + G+++ V+ M SL K F G L+
Sbjct: 276 PDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDL 335
Query: 49 WDPRL----EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
W+ + EP+ V YN +++ + A V Q++++ G P+ TTY +++
Sbjct: 336 WNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAK 395
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G E + K + +PN + Y +V+ L R + A+ +E+M +
Sbjct: 396 AGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTIT 455
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ + LC +GK E A+ ++++ + P V +Y ++ ++ + A I +++
Sbjct: 456 FNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIE 515
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
NLVT N ++ + G+F+ A+++ ++ G PD T+NT
Sbjct: 516 EMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLL------------VGGTKPDSITYNT 563
Query: 283 MLDA 286
++ A
Sbjct: 564 VIYA 567
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 131/287 (45%), Gaps = 19/287 (6%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+P + +YN VL+A + +++ + +K+ G + + TY ++++ + + + +
Sbjct: 140 KPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARK 199
Query: 114 FFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++ K IP+A++Y +V+++ R GK +EA ++ R I +Y L C
Sbjct: 200 LLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEA----RELSMR-IKSFVPVYNALINGFC 254
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
K EE +++ P V++Y+ +I + GN++ A + +M CSPN+
Sbjct: 255 REHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVH 314
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T ++K Y G EA+ L+ M ++ + P+ +NT++ +
Sbjct: 315 TFTSLMKGYFMGGRLCEALDLWNRMIQEGSE------------PNTVAYNTLIHGLCSYG 362
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
+ + V ++M +G+ N + +I ++AG + W +
Sbjct: 363 KMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKM 409
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 119/281 (42%), Gaps = 18/281 (6%)
Query: 29 VIDSMRSLPKKKFKTGTLERWD-PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG 87
V+D++ S K + G +E ++ YN +L A + + + A +L ++ +G
Sbjct: 149 VLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKG 208
Query: 88 QKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVS 147
P A +Y V+ M GK E ++ KS++P Y L+N RE K +E
Sbjct: 209 CIPDAVSYTTVVSSMCRLGKVEEARELSMRI-KSFVP---VYNALINGFCREHKMEEVFE 264
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
+M GI Y + L G E AL + K+ P V ++T L++
Sbjct: 265 LFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYF 324
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
G + A ++N+M + PN V N ++ +G EA+ + Q+M +
Sbjct: 325 MGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNG------ 378
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
V P+ T++T++D A ++ +M+ +G
Sbjct: 379 ------VFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNG 413
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/225 (19%), Positives = 88/225 (39%), Gaps = 52/225 (23%)
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY 122
V+NA R E A ++ + G KPS Y V++ +L+ K+ ++ + +++
Sbjct: 114 VINAYRRAGLAEQALKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDG 173
Query: 123 IP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
I N Y +L+ L + + D A + +M +G +
Sbjct: 174 IELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCI----------------------- 210
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241
P VSYT ++ + G ++ A + ++K+F N ++ +
Sbjct: 211 ------------PDAVSYTTVVSSMCRLGKVEEARELSMRIKSFVP----VYNALINGFC 254
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
EE +LF EMA + + PD+ T++T+++
Sbjct: 255 REHKMEEVFELFNEMAVEG------------IDPDVITYSTVINT 287
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 17/171 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y + L A +E ++ + + ++ ++V YN +L
Sbjct: 486 PNVTTYNEVLDGLFNAKRTREALQIVGEIEEM---------------EIKSNLVTYNTIL 530
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK--SY 122
+ ++GA + +L G KP + TY V+ G+ + ++ K
Sbjct: 531 SGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKKGEG 590
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
P+ Y L+ + DEAV ++ M GI + A + L R L S
Sbjct: 591 YPDVFTYTSLLWGVCNWIGVDEAVVHLDKMINEGICPNRATWNALVRGLFS 641
>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
Length = 897
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 137/282 (48%), Gaps = 29/282 (10%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
E ++V++N V+ C+ + A + + + +G +P A TY ++M + G+
Sbjct: 292 ELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVR 351
Query: 114 FFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R+++K + PN + Y +++++ + G D+ + +E+M +G+ ++ Y + LC
Sbjct: 352 LLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALC 411
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQMKNFCSPNLV 231
G+ +EA+ + ++ P + SY +I ++ ++ A ++F N ++ N +
Sbjct: 412 KDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGI 471
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQE-------------------MAEDSNHINR------E 266
T N ++ A L G +++A++L +E M +D N ++R E
Sbjct: 472 TYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGN-VDRSLVLLEE 530
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+KG + P+ ++N ++ E+R D + K+ML+ GL
Sbjct: 531 MAEKG-IKPNNVSYNILISELCKERRVRDALELSKQMLNQGL 571
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/264 (20%), Positives = 119/264 (45%), Gaps = 14/264 (5%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV- 118
YN ++ A + + + A ++Q+++ QG P +Y ++ + + F +
Sbjct: 403 YNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLL 462
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
++ + N + Y +++ L R+G+ +AV ++M G Y L + +C G +
Sbjct: 463 EEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVD 522
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMV 237
+L+ ++++ + KP VSY LI +++A + QM N +P++VT N ++
Sbjct: 523 RSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLI 582
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ G A+ L +++ ++ H PDI T+N ++ + DD
Sbjct: 583 NGLCKMGWMHAALNLLEKLHNENVH------------PDIITYNILISWHCKVRLLDDAA 630
Query: 298 LVYKRMLHHGLHFNAKRHLRMILD 321
++ R + +R ++++ D
Sbjct: 631 MLLNRAMAAVCPVGDRRIMQILPD 654
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 109/265 (41%), Gaps = 29/265 (10%)
Query: 90 PSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSA 148
P+ T+G+ + G+ + R + + +P+A+ Y+ +++ L +G EA +
Sbjct: 157 PTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATL 216
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+ +M G + D+ R +C G+ EA +D++ P V++Y L+Q
Sbjct: 217 LNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCR 276
Query: 209 SGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA----------- 257
A + ++ N+V N ++ L G EA +L++ M
Sbjct: 277 VRQADEARAMLGRVPEL---NVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTY 333
Query: 258 -------------EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
+ + RE +KKG P++ T+ +L + WDD + + M
Sbjct: 334 SILMHGLCKLGRIGSAVRLLREMEKKGFA-PNVVTYTIVLHSFCKNGMWDDTRALLEEMS 392
Query: 305 HHGLHFNAKRHLRMILDASRAGKVE 329
GL N++ + MI + G+++
Sbjct: 393 AKGLTLNSQGYNGMIYALCKDGRMD 417
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 76/342 (22%), Positives = 127/342 (37%), Gaps = 58/342 (16%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD V+Y V++A + A +L ++ G T+ V+ M G+
Sbjct: 192 PDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARL 251
Query: 115 F-RKVQKSYIPNALAYKVLVNTLWR-------------------------------EGKT 142
R + K +P + Y L+ L R EGK
Sbjct: 252 VDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKL 311
Query: 143 DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGL 202
EA E M +G A Y L LC G+ A+ + ++ K P VV+YT +
Sbjct: 312 AEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIV 371
Query: 203 IQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM----- 256
+ + +G + + +M + N N M+ A + G +EAM L QEM
Sbjct: 372 LHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGC 431
Query: 257 -------------------AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
E++ H+ ++G+V I T+NT++ A + RW D
Sbjct: 432 NPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGI-TYNTIIHALLRDGRWQDAV 490
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
+ K M+ HG + + +I + G V+ + E +A
Sbjct: 491 RLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMA 532
>gi|255661024|gb|ACU25681.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 376
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 134/286 (46%), Gaps = 15/286 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + ++ PD VVYN +LN R ++ + F + + ++G + A ++ ++M + G
Sbjct: 15 EMVERKVSPDAVVYNTMLNGFFRSQRIKDCFELWDLMGREGSRTVA-SFNIIMRGLFDNG 73
Query: 107 KYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K + + +++S ++ ++ Y +LV+ + G ++++ +E E++G V A Y
Sbjct: 74 KVDEAVSIWELMKESGFVEDSTTYGILVHGFCKNGHNNKSLHVLEIAEQKGGVLDAFAYS 133
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+ LC K ++A+ ++ + KP Y LI + + ++A F +M N
Sbjct: 134 AMINGLCKEAKLDKAISVLNSMTNNGCKPNAHVYNSLINGLVGASKYEDAICAFQEMGNM 193
Query: 226 -CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
CSP +VT N ++ + + EA L ++M E + P + T++++
Sbjct: 194 DCSPTIVTYNXLINGLCKGERYAEAYDLVKQMLEKGFN------------PSVITYSSLF 241
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
++ + ++K+++ G + + H +I GK+EL
Sbjct: 242 KGLCQGRKVEMALQLWKKVISKGFKPDVQMHNILIHGLCNVGKIEL 287
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 101/239 (42%), Gaps = 14/239 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEF 114
D Y+A++N + + + A VL + G KP+A Y ++ ++ KY + + F
Sbjct: 128 DAFAYSAMINGLCKEAKLDKAISVLNSMTNNGCKPNAHVYNSLINGLVGASKYEDAICAF 187
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
P + Y L+N L + + EA V+ M +G S Y L + LC
Sbjct: 188 QEMGNMDCSPTIVTYNXLINGLCKGERYAEAYDLVKQMLEKGFNPSVITYSSLFKGLCQG 247
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
K E AL K+ KP V + LI + G I+ A ++ M + CSPNLVT
Sbjct: 248 RKVEMALQLWKKVISKGFKPDVQMHNILIHGLCNVGKIELALALYFGMNRWKCSPNLVTL 307
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N +++ + + G + ++ + + + PDI ++N L + R
Sbjct: 308 NTLMEGFYKDGDVRSGLVIWARILRNE------------LKPDIISYNITLKGLCSCNR 354
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 111/255 (43%), Gaps = 20/255 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ ++ IK+ F++ D M R R + +N ++
Sbjct: 23 PDAVVYNTMLNGFFRSQRIKDCFELWDLMG-------------REGSR---TVASFNIIM 66
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + A + + +K+ G +TTYG+++ G N QK +
Sbjct: 67 RGLFDNGKVDEAVSIWELMKESGFVEDSTTYGILVHGFCKNGHNNKSLHVLEIAEQKGGV 126
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+A AY ++N L +E K D+A+S + M G +A +Y L L A K E+A+
Sbjct: 127 LDAFAYSAMINGLCKEAKLDKAISVLNSMTNNGCKPNAHVYNSLINGLVGASKYEDAICA 186
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
++ + P +V+Y LI A + QM K F +P+++T + + K
Sbjct: 187 FQEMGNMDCSPTIVTYNXLINGLCKGERYAEAYDLVKQMLEKGF-NPSVITYSSLFKGLC 245
Query: 242 EHGLFEEAMKLFQEM 256
+ E A++L++++
Sbjct: 246 QGRKVEMALQLWKKV 260
>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 924
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 116/254 (45%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P + + I +AG +K DV D MR ++G + P + +NA++
Sbjct: 584 PTSRTFMPIIHGFARAGEMKRALDVFDMMR-------RSGCI--------PTVHTFNALI 628
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
V ++Q E A +L ++ G P+ TY +M A G +E+F K++ +
Sbjct: 629 LGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGDTGKAFEYFTKLRDEGLQ 688
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ Y+ L+ + G+ A++ ++M + I + +Y L G EA
Sbjct: 689 LDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYNILIDGWARRGDVWEAADL 748
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
M ++ + KP + +YT I AC +G++ A+ + +M+ + PN+ T ++ +
Sbjct: 749 MQQMKQGGVKPDIHTYTSFINACCKAGDMLRASKMMEEMETSGVKPNVKTYTTLIHGWAR 808
Query: 243 HGLFEEAMKLFQEM 256
L E+A++ FQEM
Sbjct: 809 ASLPEKALRCFQEM 822
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 125/275 (45%), Gaps = 14/275 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD+V+YN ++ A + A ++++++++ +P++ T+ ++ G+
Sbjct: 547 LKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRAL 606
Query: 113 EFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F +++S IP + L+ L + + ++A+ +++M G+ + Y +
Sbjct: 607 DVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGY 666
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NL 230
+ G +A K+ + V +Y L++AC SG +Q+A + +M P N
Sbjct: 667 AALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNT 726
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
NI++ + G EA L Q+M K+G V PDI+T+ + ++AC
Sbjct: 727 FVYNILIDGWARRGDVWEAADLMQQM------------KQGGVKPDIHTYTSFINACCKA 774
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRA 325
+ + M G+ N K + +I +RA
Sbjct: 775 GDMLRASKMMEEMETSGVKPNVKTYTTLIHGWARA 809
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 128/302 (42%), Gaps = 27/302 (8%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++ I +Y+ +++ E V ++LK+ G PS +YG ++ + GK +
Sbjct: 442 IDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINLYAKVGKISKAL 501
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E + ++ + I N Y +L+N + A + ED+ + G+ LY ++ R
Sbjct: 502 EVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVVLYNNIIRAF 561
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C G + A+ + ++ K ++P ++ +I +G ++ A +F+ M ++ C P +
Sbjct: 562 CGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTV 621
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR--------------------EYDKK 270
T N ++ +E E+A+++ EMA N EY K
Sbjct: 622 HTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGDTGKAFEYFTK 681
Query: 271 ----GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
GL + D+YT+ +L AC R V K M + N + +I +R G
Sbjct: 682 LRDEGLQL-DVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYNILIDGWARRG 740
Query: 327 KV 328
V
Sbjct: 741 DV 742
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/327 (19%), Positives = 137/327 (41%), Gaps = 14/327 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+EP VY ++++A + E A +++K++G + S TY +++ G +
Sbjct: 337 IEPTSHVYTSLIHAYAVGRDMEEALSCARKMKEEGVEMSLVTYSIIVGGFAKIGNADAAD 396
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+F++ + + NA+ Y ++ + D+A + V +ME GI +Y+ +
Sbjct: 397 RWFKEAKDRHSHMNAIIYGNMIYAYCQTCNMDQAEALVREMEGEGIDAPIDIYHTMMDGY 456
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
G E+ L +++ + P VVSY LI G I A + M++ N+
Sbjct: 457 TMVGNEEKCLTVFERLKECGFAPSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNM 516
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T ++++ +L+ + A +F+++ +D + PD+ +N ++ A
Sbjct: 517 KTYSMLINGFLKLKDWANAFAIFEDVVKDG------------LKPDVVLYNNIIRAFCGM 564
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
D + K M ++ + +I +RAG+++ ++ + R+ I
Sbjct: 565 GTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTF 624
Query: 351 KERFCNRLENKDYGSAISCLVSHPVSG 377
+E + AI L ++G
Sbjct: 625 NALILGLVEKRQMEKAIEILDEMALAG 651
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 5/138 (3%)
Query: 56 DIVVYNAVLNACVRRKQ-WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
+ VYN +++ RR WE A ++QQ+KQ G KP TY + G +
Sbjct: 725 NTFVYNILIDGWARRGDVWEAAD-LMQQMKQGGVKPDIHTYTSFINACCKAGDMLRASKM 783
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++ S + PN Y L++ R ++A+ ++M+ G+ A+Y+ L L S
Sbjct: 784 MEEMETSGVKPNVKTYTTLIHGWARASLPEKALRCFQEMKLAGLKPDKAVYHCLMTALLS 843
Query: 174 AGKCEEALMQ--MDKICK 189
EA ++ + ICK
Sbjct: 844 RATVTEAYVRPGILSICK 861
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 18/178 (10%)
Query: 111 VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
V F +++K P+ Y ++V+ R G A E M RGI ++ +Y L
Sbjct: 294 VVSAFERIKK---PSRREYGLMVSYYARRGDMHRARQTFESMRARGIEPTSHVYTSLIHA 350
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-N 229
EEAL K+ + + +V+Y+ ++ GN A F + K+ S N
Sbjct: 351 YAVGRDMEEALSCARKMKEEGVEMSLVTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMN 410
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDA 286
+ M+ AY + ++A L +EM + +G+ P DIY +TM+D
Sbjct: 411 AIIYGNMIYAYCQTCNMDQAEALVREM-----------EGEGIDAPIDIY--HTMMDG 455
>gi|115446101|ref|NP_001046830.1| Os02g0470000 [Oryza sativa Japonica Group]
gi|47497415|dbj|BAD19472.1| putative PPR protein [Oryza sativa Japonica Group]
gi|47497530|dbj|BAD19582.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113536361|dbj|BAF08744.1| Os02g0470000 [Oryza sativa Japonica Group]
Length = 649
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 145/316 (45%), Gaps = 47/316 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ + GH+ + D++++M +P+ V YNA L
Sbjct: 258 PDVVIYSTLINGFSEQGHVDQALDLLNTMLC------------------KPNTVCYNAAL 299
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
++WE ++ ++ ++G P+ T+ +++ + + E +++K
Sbjct: 300 KGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCE 359
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD-LARCLCSAGKCEEALM 182
P+ + Y +++N+L G+ D+A+ + M + AL ++ + + C A + +A
Sbjct: 360 PDTVNYNIIINSLSERGRVDDALRLLNSM----VCKPDALGFNAVLKGFCRAERWHDASE 415
Query: 183 QMDKICKVANKPLV-VSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAY 240
+ ++ + + PL+ +++ LI +G + A +F QM + C+P++VT + ++ +
Sbjct: 416 LIAQMFR-DDCPLIEMTFNILIDMLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGF 474
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD----- 295
E GL E A++LF+ M PDI+++N +L RW+D
Sbjct: 475 SEQGLVEVAIQLFRSMP---------------CKPDIFSYNAVLKGLCRAARWEDAGELI 519
Query: 296 LELVYKRMLHHGLHFN 311
E+V K + + FN
Sbjct: 520 AEMVGKDCPPNEVTFN 535
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/329 (22%), Positives = 139/329 (42%), Gaps = 46/329 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV Y I +L + G + + +++SM +PD + +NAVL
Sbjct: 360 PDTVNYNIIINSLSERGRVDDALRLLNSMVC------------------KPDALGFNAVL 401
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
R ++W A ++ Q+ + T+ ++++++ G N + F ++ +
Sbjct: 402 KGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDMLCQNGLVNYATQVFEQMPRYRCT 461
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L+N +G + A+ M + + S Y + + LC A + E+A
Sbjct: 462 PDIVTYSSLLNGFSEQGLVEVAIQLFRSMPCKPDIFS---YNAVLKGLCRAARWEDAGEL 518
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLE 242
+ ++ P V++ LI + G + A + QM N+ S P++ T N ++ + E
Sbjct: 519 IAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSE 578
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G ++A+KL M+ PD ++N+ L +RW D E +
Sbjct: 579 QGRLDDALKLLSTMS---------------CKPDAISYNSTLKGLCRAERWQDAEELVAE 623
Query: 303 MLHHG-----LHFNAKRHLRMILDASRAG 326
ML + + F HL M +RAG
Sbjct: 624 MLRNKCTPNEVTFKYANHLLM---PNRAG 649
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 107/256 (41%), Gaps = 22/256 (8%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PD YN VL K+WE A ++ ++ + P+ T+ + G +
Sbjct: 186 VAPDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAV 245
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA-RC 170
+ ++ + P+ + Y L+N +G D+A+ + M + + Y+ A +
Sbjct: 246 QLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTM----LCKPNTVCYNAALKG 301
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPN 229
LC A + E+ M ++ + P +++ LI + + + +A + QM+ + C P+
Sbjct: 302 LCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPD 361
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
V NI++ + E G ++A++L M + PD FN +L
Sbjct: 362 TVNYNIIINSLSERGRVDDALRLLNSM---------------VCKPDALGFNAVLKGFCR 406
Query: 290 EKRWDDLELVYKRMLH 305
+RW D + +M
Sbjct: 407 AERWHDASELIAQMFR 422
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/206 (18%), Positives = 82/206 (39%), Gaps = 25/206 (12%)
Query: 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK 186
+++ LV R+G+ +A + G + Y L C +G+ ++AL
Sbjct: 125 VSHNTLVAGYCRDGRLADAERVLGAARATG-AANVVTYTALIDGYCRSGRLDDALRL--- 180
Query: 187 ICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGL 245
I + P +Y +++ C+ + + ++N C PN VT ++++ ++GL
Sbjct: 181 IASMPVAPDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGL 240
Query: 246 FEEAMKLFQEMAE------------------DSNHINREYD--KKGLVIPDIYTFNTMLD 285
+ A++L +M + H+++ D L P+ +N L
Sbjct: 241 LDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTMLCKPNTVCYNAALK 300
Query: 286 ACAAEKRWDDLELVYKRMLHHGLHFN 311
+RW+D+ + M+ G N
Sbjct: 301 GLCIAERWEDIGELMAEMVRKGCSPN 326
>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g19440, chloroplastic-like [Cucumis sativus]
Length = 799
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 129/305 (42%), Gaps = 29/305 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D + Y ++ + G ++ F + + M K G ++PDI YN +L
Sbjct: 499 DRITYNALILGFCNEGKVEGCFRLREEMT-------KRG--------IQPDIYTYNFLLR 543
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIP 124
+ + A + + K G + TYG++ME + V F ++ K
Sbjct: 544 GLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMEL 603
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N++ Y +++ + G A+ +E+M+ +GI+ + A Y L +C+ G E+A +
Sbjct: 604 NSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLI 663
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
D++ K P VV YT LI G + A + +M +F PN T +M+ Y +
Sbjct: 664 DEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKL 723
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G E+A L +M E ++PD+ T+N + + D+ V +M
Sbjct: 724 GNMEKANNLLIKMKESG------------IVPDVVTYNVLTNGFCKANDMDNAFKVCDQM 771
Query: 304 LHHGL 308
GL
Sbjct: 772 ATEGL 776
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 122/301 (40%), Gaps = 30/301 (9%)
Query: 56 DIVVYNAVLNACVRRKQWEGA-FWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
D+++ V C K E W +L ++G S T ++ + GK
Sbjct: 430 DLLLTMLVCGLCKDGKHLEATELWF--RLLEKGSPASKVTSNALIHGLCGAGKLPEASRI 487
Query: 115 FRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++ + +P + + Y L+ EGK + E+M +RGI Y L R LC+
Sbjct: 488 VKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCN 547
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVT 232
GK ++A+ D+ + +Y +++ + I++ +FN+ + N +
Sbjct: 548 VGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIV 607
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEM------------------------AEDSNHINREYD 268
NI++KA+ ++G A++L + M ED+ H+ E
Sbjct: 608 YNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMR 667
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
K+G V P++ + ++ + D E + M+ +H N + MI + G +
Sbjct: 668 KEGFV-PNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNM 726
Query: 329 E 329
E
Sbjct: 727 E 727
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 94/212 (44%), Gaps = 5/212 (2%)
Query: 43 TGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
T + R++ D++++ V + R + A V L ++G PS T + +
Sbjct: 139 TSVVGRFEWTQAFDLLIH--VYSTQFRNLGFSCAVDVFYLLARKGTFPSLKTCNFXLSSL 196
Query: 103 LACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+ ++ E FR + + P+ ++ ++N L + GK + A+ ME+ GI +
Sbjct: 197 VKANEFEKCCEVFRVMSEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVV 256
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y + LC G+ + A +K+ +P + +Y LI + +I ++M
Sbjct: 257 TYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEM 316
Query: 223 --KNFCSPNLVTCNIMVKAYLEHGLFEEAMKL 252
F +PN+V N ++ Y + G E A+K+
Sbjct: 317 IGAGF-NPNVVVFNNLIDGYCKMGNIEGALKI 347
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/395 (17%), Positives = 149/395 (37%), Gaps = 77/395 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD ++ ++ L + G ++ ++ M L + P++V YN ++
Sbjct: 218 PDVFSFTNVINALCKGGKMENAIELFMKMEKL---------------GISPNVVTYNCII 262
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + + + AF + +++ +G +P+ TYG ++ ++ ++ V + + +
Sbjct: 263 NGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFN 322
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + L++ + G + A+ + M + I ++ Y L + C + + E A
Sbjct: 323 PNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENA 382
Query: 184 MDKI-------------------CKVANKPLVVSYTGLIQA-----------------CL 207
+++I CK +T ++ + C
Sbjct: 383 LEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCK 442
Query: 208 DSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR-- 265
D +++ F ++ + VT N ++ G EA ++ +EM E ++R
Sbjct: 443 DGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRIT 502
Query: 266 ----------------------EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
E K+G + PDIYT+N +L + DD ++
Sbjct: 503 YNALILGFCNEGKVEGCFRLREEMTKRG-IQPDIYTYNFLLRGLCNVGKLDDAIKLWDEF 561
Query: 304 LHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
GL N + M+ +A ++E +E + L
Sbjct: 562 KASGLISNIHTYGIMMEGYCKANRIEDVENLFNEL 596
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 5/205 (2%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P + N L++ V+ ++E V + + +G P ++ V+ + GK E
Sbjct: 184 PSLKTCNFXLSSLVKANEFEKCCEVFRVM-SEGACPDVFSFTNVINALCKGGKMENAIEL 242
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F K++K I PN + Y ++N L + G+ D A E M +G+ + Y L L
Sbjct: 243 FMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIK 302
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLV 231
++ +D++ P VV + LI GNI+ A I + M KN +P V
Sbjct: 303 LNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNI-TPTSV 361
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEM 256
T +++ + + E A +E+
Sbjct: 362 TLYSLMQGFCKSDQIEHAENALEEI 386
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 35/201 (17%), Positives = 81/201 (40%), Gaps = 16/201 (7%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+++ Y I Q G++ ++++M+S G L P+ Y+++++
Sbjct: 604 NSIVYNIIIKAHCQNGNVAAALQLLENMKS-------KGIL--------PNCATYSSLIH 648
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE-FFRKVQKSYIP 124
E A ++ +++++G P+ Y ++ G+ + + + + P
Sbjct: 649 GVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHP 708
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N Y V+++ + G ++A + + M+ GIV Y L C A + A
Sbjct: 709 NKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVC 768
Query: 185 DKICKVANKPLVVSYTGLIQA 205
D++ ++YT L+
Sbjct: 769 DQMATEGLPVDEITYTTLVHG 789
>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
Length = 683
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 126/288 (43%), Gaps = 16/288 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK--PSATTYGLVMEVMLACGKYNLVY 112
PD+ YN +LN + + A +L + G P +Y V+ G + Y
Sbjct: 49 PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTY 108
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ ++ I PN + Y ++ L + D+A+ + M + G++ Y +
Sbjct: 109 STYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGF 168
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
CS+G+ +EA++ + K+ +P VV+Y L+ +G A IF+ M K P +
Sbjct: 169 CSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEI 228
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T +++ Y G E L M + H P+ Y F+ ++ A A +
Sbjct: 229 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIH------------PNHYVFSILVCAYAKQ 276
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
++ ++ LV+ +M GL+ NA + +I ++G+VE + +E +
Sbjct: 277 EKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 324
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 131/307 (42%), Gaps = 31/307 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y SI +G KE + MRS +EPD+V YN+++
Sbjct: 156 PDCMTYNSIVHGFCSSGQPKEAIVFLKKMRS---------------DGVEPDVVTYNSLM 200
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + A + + ++G KP TTYG +++ G ++ + ++ I
Sbjct: 201 DYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 260
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + +LV ++ K +EA+ M ++G+ +A Y + LC +G+ E+A++
Sbjct: 261 PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLY 320
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
+++ P + Y LI + A + +M + C N + N ++ ++
Sbjct: 321 FEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGIC-LNTIFFNSIIDSHC 379
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G E+ KLF M V PDI T++T++D + D+ +
Sbjct: 380 KEGRVIESEKLFDLMVRIG------------VKPDIITYSTLIDGYCLAGKMDEATKLLA 427
Query: 302 RMLHHGL 308
M+ G+
Sbjct: 428 SMVSVGM 434
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 71/352 (20%), Positives = 146/352 (41%), Gaps = 33/352 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y ++ + G + + + + M D R+ P++V YN+++
Sbjct: 86 PDVVSYSTVINGFFKEGDLDKTYSTYNEM---------------LDQRISPNVVTYNSII 130
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
A + + + A VL + + G P TY ++ + G+ F +K++ +
Sbjct: 131 AALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVE 190
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ L + G+ EA + M +RG+ Y L + + G E
Sbjct: 191 PDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL 250
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+D + + P ++ L+ A ++ A +F++M+ +PN VT ++ +
Sbjct: 251 LDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCK 310
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G E+AM F++M ++ + P +N+++ +W+ E +
Sbjct: 311 SGRVEDAMLYFEQMIDEG------------LSPGNIVYNSLIHGLCTCNKWERAEELILE 358
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPALI 350
ML G+ N +I + G+V +L ++ + D IT LI
Sbjct: 359 MLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLI 410
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 80/375 (21%), Positives = 151/375 (40%), Gaps = 70/375 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTLERWDPR---------- 52
PD V Y S+ L + G E + DSM R L + GTL +
Sbjct: 191 PDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL 250
Query: 53 --------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ P+ V++ ++ A ++++ E A V +++QQG P+A TYG V+ ++
Sbjct: 251 LDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCK 310
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLV--------------------------NTLW 137
G+ +F + + + P + Y L+ NT++
Sbjct: 311 SGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIF 370
Query: 138 ---------REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
+EG+ E+ + M R G+ Y L C AGK +EA + +
Sbjct: 371 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMV 430
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFE 247
V KP V+Y+ LI +++A +F +M++ SP+++T NI+++ +
Sbjct: 431 SVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTA 490
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
A +L+ + + + ++ T+N +L K DD +++ +
Sbjct: 491 AAKELYVGITKSGRQL------------ELSTYNIILHGLCKNKLTDDALRMFQNLCLMD 538
Query: 308 LHFNAKRHLRMILDA 322
L A R +++DA
Sbjct: 539 LKLEA-RTFNIMIDA 552
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 11/243 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PDI+ Y+ +++ + + A +L + G KP TY ++ +
Sbjct: 399 VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDAL 458
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
FR+++ S + P+ + Y +++ L++ +T A + + G + Y + L
Sbjct: 459 VLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGL 518
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C ++AL +C + K ++ +I A L G A +F N PN
Sbjct: 519 CKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNY 578
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKGLVIPDIYTFNT 282
T +M + + GL EE +LF M ++ N I RE ++G I T+ +
Sbjct: 579 WTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRG-EITRAGTYLS 637
Query: 283 MLD 285
M+D
Sbjct: 638 MID 640
>gi|356503440|ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Glycine max]
Length = 832
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 142/331 (42%), Gaps = 36/331 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFK-------TGTLERWDPRLE- 54
PD Y +I G+AG + +++D M ++P + G+ W L
Sbjct: 184 PDVETYNAIINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNV 243
Query: 55 ----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
PD+V +N +L+A Q+ A + +K +P TT +V+ ++
Sbjct: 244 CKKMTENGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVK 303
Query: 105 CGKYNLVYEFF---RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
+Y+ E F R+ + P+ + + +++ G+ + +A M G+ +
Sbjct: 304 LRQYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNI 363
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L + G EA + ++I + +P +VSYT L+ A S A IF++
Sbjct: 364 VSYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDR 423
Query: 222 MK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
MK N PNLV+ N ++ AY +GL +A+K+ +EM ++ + P++ +
Sbjct: 424 MKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEG------------IQPNVVSI 471
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
T+L AC R ++ V G+ N
Sbjct: 472 CTLLAACGRCSRKVKIDTVLTAAEMRGIKLN 502
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 119/277 (42%), Gaps = 32/277 (11%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
++ W R +PD+ YNA++NA R QW A ++ + + PS +TY ++ +
Sbjct: 177 MQEW--RCKPDVETYNAIINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSS 234
Query: 106 GKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G + +K+ ++ + P+ + + ++++ + +A+S E M+ I
Sbjct: 235 GNWKEALNVCKKMTENGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTTL 294
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANK---------PLVVSYTGLIQACLDSGNIQNA 215
+ CL L Q DK ++ N P VV++T +I G ++N
Sbjct: 295 NIVIHCLVK-------LRQYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENC 347
Query: 216 AYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI 274
FN M PN+V+ N ++ AY G+ EA F E+ ++
Sbjct: 348 EAAFNMMIAEGLKPNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGFR------------ 395
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
PDI ++ ++L+A ++ ++ RM + L N
Sbjct: 396 PDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPN 432
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 123/280 (43%), Gaps = 33/280 (11%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+P+IV YNA++ A R A ++KQ G +P +Y ++ K +
Sbjct: 359 LKPNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKAR 418
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F +++++ + PN ++Y L++ G +A+ + +ME+ GI + + L
Sbjct: 419 QIFDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQPNVV---SICTLL 475
Query: 172 CSAGKCEEALMQMDKICKVAN----KPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
+ G+C + ++D + A K V+Y I +C++ G A ++ M K
Sbjct: 476 AACGRCSRKV-KIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKI 534
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE--------YDKKGLVI---- 274
+ VT +++ + + EA+ +E+ +++E Y K+G ++
Sbjct: 535 KTDSVTYTVLISGCCKMSKYGEALSFMEEIMHLKLPLSKEVYSSAICAYSKQGQIVEAES 594
Query: 275 -----------PDIYTFNTMLDACAAEKRWDDLELVYKRM 303
PD+ T+ MLDA A + W+ +++ M
Sbjct: 595 TFNLMKSSGCYPDVVTYTAMLDAYNAAENWEKAYALFEEM 634
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 118/267 (44%), Gaps = 35/267 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y S+ G++ + + D M+ +L+P++V YNA++
Sbjct: 396 PDIVSYTSLLNAYGRSQKPHKARQIFDRMKR---------------NKLKPNLVSYNALI 440
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+A A +L++++Q+G +P+ + + ++ ACG+ + RKV+ +
Sbjct: 441 DAYGSNGLLADAIKILREMEQEGIQPNVVS---ICTLLAACGRCS------RKVKIDTVL 491
Query: 125 ----------NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
N +AY + + G+ D+A+ + M ++ I + Y L C
Sbjct: 492 TAAEMRGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTVLISGCCKM 551
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
K EAL M++I + Y+ I A G I A FN MK+ C P++VT
Sbjct: 552 SKYGEALSFMEEIMHLKLPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTY 611
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDS 260
M+ AY +E+A LF+EM S
Sbjct: 612 TAMLDAYNAAENWEKAYALFEEMEASS 638
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 27/229 (11%)
Query: 109 NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
N V+ + + QK+Y Y +++ R +TD+A +M+ Y +
Sbjct: 135 NRVFRWLKN-QKNYRARNDIYNMMIRLHARHNRTDQARGLFFEMQEWRCKPDVETYNAII 193
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
AG+ A+ MD + + A P +Y LI AC SGN + A + +M +N
Sbjct: 194 NAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVG 253
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMA-----EDSNHIN---------REYD----- 268
P+LVT NI++ A+ + +A+ F+ M D+ +N R+YD
Sbjct: 254 PDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIEI 313
Query: 269 ------KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
KK PD+ TF +++ + + ++ E + M+ GL N
Sbjct: 314 FNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPN 362
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 60/288 (20%), Positives = 119/288 (41%), Gaps = 32/288 (11%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTL------------------- 46
+TVAY + +G ++ E I +S+ KKK KT ++
Sbjct: 502 NTVAYNA---AIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTVLISGCCKMSKYGEAL 558
Query: 47 ----ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
E +L VY++ + A ++ Q A +K G P TY +++
Sbjct: 559 SFMEEIMHLKLPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAY 618
Query: 103 LACGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
A + Y F +++ S I + +A L+ + + G+ +S E M + I S
Sbjct: 619 NAAENWEKAYALFEEMEASSIKLDTIACAALMRSFNKGGQPGRVLSLAESMREKEIPFSD 678
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS--YTGLIQACLDSGNIQNAAYIF 219
+++++ CS + + M K + + P++ S + + SG I+ +F
Sbjct: 679 TIFFEMVSA-CSILQDWRTAVDMIKYIE-PSLPVISSGCLNQFLHSLGKSGKIETMLKLF 736
Query: 220 NQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
+M + NL T +I++K L G + + +++ Q M + H ++E
Sbjct: 737 FKMLASGADVNLNTYSILLKNLLSSGNWRKYLEVLQWMEDAGIHPSKE 784
>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/346 (21%), Positives = 146/346 (42%), Gaps = 35/346 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKK---------FKTGTLERW-- 49
+PDTV Y ++ G+ + D M+ P K FK G +E
Sbjct: 228 FPDTVTYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALN 287
Query: 50 ------DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
R P + Y ++ + + E A+ V + + + G KP ++ ++
Sbjct: 288 LVHEMRMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILG 347
Query: 104 ACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWRE-GKTDEAVSAVEDMERRGIVGSA 161
+ E F +++ + PN + Y ++ +L+ + EA S +E M++ G+V S+
Sbjct: 348 RSDRLKEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSS 407
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L C + E+AL+ ++++ + P +Y LI + + + A +F +
Sbjct: 408 FTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQE 467
Query: 222 MKNFCSPNLVTC-NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
+K C + V +M+K + + G F EAM LF EM KK IPD+Y +
Sbjct: 468 LKENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEM------------KKLGCIPDVYAY 515
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
N ++ D+ +++ M +G + + H ++ +R G
Sbjct: 516 NALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTG 561
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 123/269 (45%), Gaps = 31/269 (11%)
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV--QKSYIPNA 126
R K A + Q+K + +P+A TY V+ +++ G + V+E + ++ + P+
Sbjct: 172 RVKMVNKALSIFYQVKGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDT 231
Query: 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK 186
+ Y L++ + + D AV ++M+ G+ +A +Y L GK EEAL + +
Sbjct: 232 VTYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHE 291
Query: 187 ICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQMKNFCSPNLVTCNIMVKAYLEHGL 245
+ P V +YT LI+ SG +++A ++ N +K+ C P++V N ++
Sbjct: 292 MRMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDR 351
Query: 246 FEEAMKLFQEM--------------------------AEDSNHINREYDKKGLVIPDIYT 279
+EA++LF+EM +E S+ + R KK V+P +T
Sbjct: 352 LKEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERM--KKDGVVPSSFT 409
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGL 308
++ ++D R + L+ + M G
Sbjct: 410 YSILIDGFCKTNRVEKALLLLEEMDEKGF 438
>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 530
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 115/255 (45%), Gaps = 14/255 (5%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
+ EPD++VY ++++ R A V +K+ G KP+ TY +V++ + CG+
Sbjct: 242 KFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRA 301
Query: 112 YEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
++ F + + PNA+ + L+ + G+T++ + M+R G Y L
Sbjct: 302 HDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIES 361
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPN 229
C +EA+ +D + K P ++ + + ++ A ++ +MK C PN
Sbjct: 362 HCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCMPN 421
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+T NI+++ + + + +KL +EM E V P++ T+ ++
Sbjct: 422 TLTYNILMRMFADSKSIDMVLKLKKEMDESE------------VEPNVNTYRILILMFCE 469
Query: 290 EKRWDDLELVYKRML 304
+ W++ + K M+
Sbjct: 470 KGHWNNAYNLMKEMV 484
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 103/235 (43%), Gaps = 14/235 (5%)
Query: 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR 116
+ ++ ++ VR A +++ G KP ++ +V+ + + + FF
Sbjct: 178 VSTFSVLVRRYVRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRASEAELFFD 237
Query: 117 KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
++ + P+ + Y LV+ R G +A DM+ G+ + Y + LC G+
Sbjct: 238 SLKHKFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQ 297
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNI 235
A ++ P V++ L++ + +G + ++NQMK C+ + ++ N
Sbjct: 298 ITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNF 357
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+++++ + +EA+K+ M KKG V P+ TFN++ C AE
Sbjct: 358 LIESHCKDENLDEAVKVLDTMV-----------KKG-VAPNASTFNSIF-GCIAE 399
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 61/145 (42%), Gaps = 11/145 (7%)
Query: 21 GHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVL 80
G I EL DV + R K K + + P+ + YN ++ K + +
Sbjct: 395 GCIAELHDVNGAHRMYAKMK---------ELKCMPNTLTYNILMRMFADSKSIDMVLKLK 445
Query: 81 QQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV--QKSYIPNALAYKVLVNTLWR 138
+++ + +P+ TY +++ + G +N Y +++ +K PN Y+ ++ L
Sbjct: 446 KEMDESEVEPNVNTYRILILMFCEKGHWNNAYNLMKEMVEEKCLKPNLSIYETVLELLRN 505
Query: 139 EGKTDEAVSAVEDMERRGIVGSAAL 163
G+ + VE M RG V L
Sbjct: 506 AGQLKKHEELVEKMVARGFVSPRPL 530
>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
Length = 702
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 128/301 (42%), Gaps = 53/301 (17%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E +P P+ ++Y V+N + Q + AF +L ++K++G K + +++ + G
Sbjct: 101 EELEPLCFPNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKG 160
Query: 107 KYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERR-----GIVGSA 161
+ + E F+ + + PN + Y +VN L + + DEA+ +DME+R G
Sbjct: 161 RIDEALEQFKSMGEECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDV 220
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA---------CLD---- 208
Y + LC A + ++A ++ V P VV+Y+ LI CL+
Sbjct: 221 ISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLH 280
Query: 209 ----------------------SGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGL 245
+ + A F ++ K+ PN+VT N+ V + G
Sbjct: 281 MKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGR 340
Query: 246 FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
+EA ++ EM E V PD+ T+++++D R D + V+ RM+
Sbjct: 341 VDEAYRILLEMVESK------------VTPDVITYSSIIDGFCKAGRMDKADDVFTRMMV 388
Query: 306 H 306
H
Sbjct: 389 H 389
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/349 (20%), Positives = 160/349 (45%), Gaps = 27/349 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y ++ L +A I E ++ D M +K+++ EPD++ Y+ V+
Sbjct: 178 PNVITYNTVVNGLCKANRIDEALELFDDM----EKRYEASH------GCEPDVISYSTVI 227
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+A + ++ + A+ ++++ G P+ TY +++ + + + E + +K +
Sbjct: 228 DALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFG 287
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + + +++ LW+ + ++A E + + G + Y LC AG+ +EA
Sbjct: 288 INIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRI 347
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ ++ + P V++Y+ +I +G + A +F +M + C P+ VT ++ + E
Sbjct: 348 LLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSE 407
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD-ACAAEKRWDDLELVYK 301
H EA ++ ++M +N + IP + T+N ++D C A+ LE +Y
Sbjct: 408 HKKSREAFRVHEDM------VNAGF------IPGLQTYNVLMDCVCGADSVESALE-IYH 454
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
+M + + +I RA +V+ + + + AD + P I
Sbjct: 455 KMKRKKRQPDCNTYAPLIQCLCRARRVDEAK-EFLDVMEADNVVPNGAI 502
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/354 (20%), Positives = 139/354 (39%), Gaps = 68/354 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM---RSLPK--------KKFKTGTLERWDPRL 53
PD + Y SI +AG + + DV M +P F R R+
Sbjct: 358 PDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRV 417
Query: 54 EPDIV---------VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
D+V YN +++ E A + ++K++ ++P TY +++ +
Sbjct: 418 HEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCR 477
Query: 105 CGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSA--------------- 148
+ + EF ++ + +PN LV L ++G+ DEA S
Sbjct: 478 ARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGET 537
Query: 149 ----VEDMERR-------------GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA 191
VE++ R G V AA Y +C AGK +EA+ ++++
Sbjct: 538 FKILVEELYLRKKWEAASKLLRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKG 597
Query: 192 NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAM 250
+P +Y ++++ +++A F +M + C+P LVT +++ + +EA
Sbjct: 598 VRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAF 657
Query: 251 KLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
++F+ M P T T L +C + + DL LV +R++
Sbjct: 658 RIFEAMVAAG------------FTPQAQTMRT-LSSCLRDAGYQDL-LVRQRIM 697
>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Cucumis sativus]
Length = 822
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 129/305 (42%), Gaps = 29/305 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D + Y ++ + G ++ F + + M K G ++PDI YN +L
Sbjct: 522 DRITYNALILGFCNEGKVEGCFRLREEMT-------KRG--------IQPDIYTYNFLLR 566
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIP 124
+ + A + + K G + TYG++ME + V F ++ K
Sbjct: 567 GLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMEL 626
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N++ Y +++ + G A+ +E+M+ +GI+ + A Y L +C+ G E+A +
Sbjct: 627 NSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLI 686
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
D++ K P VV YT LI G + A + +M +F PN T +M+ Y +
Sbjct: 687 DEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKL 746
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G E+A L +M E ++PD+ T+N + + D+ V +M
Sbjct: 747 GNMEKANNLLIKMKESG------------IVPDVVTYNVLTNGFCKANDMDNAFKVCDQM 794
Query: 304 LHHGL 308
GL
Sbjct: 795 ATEGL 799
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 122/301 (40%), Gaps = 30/301 (9%)
Query: 56 DIVVYNAVLNACVRRKQWEGA-FWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
D+++ V C K E W +L ++G S T ++ + GK
Sbjct: 453 DLLLTMLVCGLCKDGKHLEATELWF--RLLEKGSPASKVTSNALIHGLCGAGKLPEASRI 510
Query: 115 FRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++ + +P + + Y L+ EGK + E+M +RGI Y L R LC+
Sbjct: 511 VKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCN 570
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVT 232
GK ++A+ D+ + +Y +++ + I++ +FN+ + N +
Sbjct: 571 VGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIV 630
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEM------------------------AEDSNHINREYD 268
NI++KA+ ++G A++L + M ED+ H+ E
Sbjct: 631 YNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMR 690
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
K+G V P++ + ++ + D E + M+ +H N + MI + G +
Sbjct: 691 KEGFV-PNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNM 749
Query: 329 E 329
E
Sbjct: 750 E 750
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 95/211 (45%), Gaps = 3/211 (1%)
Query: 43 TGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
T + R++ D++++ V + R + A V L ++G PS T ++ +
Sbjct: 162 TSVVGRFEWTQAFDLLIH--VYSTQFRNLGFSCAVDVFYLLARKGTFPSLKTCNFLLSSL 219
Query: 103 LACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+ ++ E FR + + P+ ++ ++N L + GK + A+ ME+ GI +
Sbjct: 220 VKANEFEKCCEVFRVMSEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVV 279
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y + LC G+ + A +K+ +P + +Y LI + ++ ++M
Sbjct: 280 TYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEM 339
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKL 252
+ +PN+V N ++ Y + G E A+K+
Sbjct: 340 IGSGFNPNVVVFNNLIDGYCKMGNIEGALKI 370
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/395 (17%), Positives = 149/395 (37%), Gaps = 77/395 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD ++ ++ L + G ++ ++ M L + P++V YN ++
Sbjct: 241 PDVFSFTNVINALCKGGKMENAIELFMKMEKL---------------GISPNVVTYNCII 285
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + + + AF + +++ +G +P+ TYG ++ ++ ++ V + + +
Sbjct: 286 NGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFN 345
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + L++ + G + A+ + M + I ++ Y L + C + + E A
Sbjct: 346 PNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENA 405
Query: 184 MDKI-------------------CKVANKPLVVSYTGLIQA-----------------CL 207
+++I CK +T ++ + C
Sbjct: 406 LEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCK 465
Query: 208 DSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR-- 265
D +++ F ++ + VT N ++ G EA ++ +EM E ++R
Sbjct: 466 DGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRIT 525
Query: 266 ----------------------EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
E K+G + PDIYT+N +L + DD ++
Sbjct: 526 YNALILGFCNEGKVEGCFRLREEMTKRG-IQPDIYTYNFLLRGLCNVGKLDDAIKLWDEF 584
Query: 304 LHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
GL N + M+ +A ++E +E + L
Sbjct: 585 KASGLISNIHTYGIMMEGYCKANRIEDVENLFNEL 619
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 5/205 (2%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P + N +L++ V+ ++E V + + +G P ++ V+ + GK E
Sbjct: 207 PSLKTCNFLLSSLVKANEFEKCCEVFRVM-SEGACPDVFSFTNVINALCKGGKMENAIEL 265
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F K++K I PN + Y ++N L + G+ D A E M +G+ + Y L L
Sbjct: 266 FMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIK 325
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLV 231
++ +D++ P VV + LI GNI+ A I + M KN +P V
Sbjct: 326 LNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNI-TPTSV 384
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEM 256
T +++ + + E A +E+
Sbjct: 385 TLYSLMQGFCKSDQIEHAENALEEI 409
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/201 (17%), Positives = 81/201 (40%), Gaps = 16/201 (7%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+++ Y I Q G++ ++++M+S G L P+ Y+++++
Sbjct: 627 NSIVYNIIIKAHCQNGNVAAALQLLENMKS-------KGIL--------PNCATYSSLIH 671
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE-FFRKVQKSYIP 124
E A ++ +++++G P+ Y ++ G+ + + + + P
Sbjct: 672 GVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHP 731
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N Y V+++ + G ++A + + M+ GIV Y L C A + A
Sbjct: 732 NKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVC 791
Query: 185 DKICKVANKPLVVSYTGLIQA 205
D++ ++YT L+
Sbjct: 792 DQMATEGLPVDEITYTTLVHG 812
>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
Length = 628
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 126/278 (45%), Gaps = 19/278 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++ YN +++ + KQ + A ++ ++ G P TY +++ + GK + +
Sbjct: 337 PNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDL 396
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ K + P++ ++N L + GK D A+S +E M+ RG Y L LC
Sbjct: 397 LEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCK 456
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
AG+ +EA+ + K+ P V SYT +I A SG A IF +M K P+ V
Sbjct: 457 AGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVL 516
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEK 291
+ ++ +GL + A++L K L PD ++D C A K
Sbjct: 517 YHSLLDGLARNGLEDLALELL---------------KTSLCKPDFVMHKMVVDGLCKAGK 561
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
D E+V +RM G +A ++ ++ + GKV+
Sbjct: 562 AEDACEVV-ERMADAGFPADAFTYINVVRGLRKLGKVD 598
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 131/297 (44%), Gaps = 34/297 (11%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V +N++L ++ AF + + + + G +P+ +Y +++ + G+ +
Sbjct: 142 PDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRL 201
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ + V+KS +P+ +AY V L + + EA M +G A + + LC
Sbjct: 202 WEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCK 261
Query: 174 AGKCEEALMQM----------DKICKVANK-------PLVVSYTGLIQACLDSGNIQNAA 216
G EEA QM D+ CK + P + LI A S + +
Sbjct: 262 KGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGV 321
Query: 217 YIFNQMKN----FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGL 272
+F +MK+ +C PNL T NIMV + +EA +L EMA N+ GL
Sbjct: 322 LLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMA---NY--------GL 370
Query: 273 VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
PD+ T++ ++D + D + + M G+ ++ ++ S+AGKV+
Sbjct: 371 S-PDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVD 426
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 123/302 (40%), Gaps = 67/302 (22%)
Query: 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR 116
+ YN L+A + + A+ QQ++++G P TY +V+ + G+ + E
Sbjct: 38 VFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLG 97
Query: 117 KVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMER-RGIVGSAALYYDLARCLCSA 174
++++S + N + Y V+++ + + D+A+ + M G V + L + LCS
Sbjct: 98 QLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSG 157
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT- 232
+ EA + + + K +P V+SY+ L+ +G + A ++ +M + C P+LV
Sbjct: 158 ERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAY 217
Query: 233 -------------------CNIMV----------------------------KAYLEH-- 243
C MV +EH
Sbjct: 218 TSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLC 277
Query: 244 --GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G+ +EA K F+EM I+R + P FNT++ A KR D L+++
Sbjct: 278 RSGMLDEACKTFEEM------ISRNHP------PSAELFNTLIHAVCKSKRLPDGVLLFQ 325
Query: 302 RM 303
RM
Sbjct: 326 RM 327
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 16/215 (7%)
Query: 95 YGLVMEVMLACGKYNLVYEFFRKV--QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM 152
Y +V EV+ GK + + F + QK Y + Y ++ L + A + M
Sbjct: 5 YTVVGEVLRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQM 64
Query: 153 ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI 212
+RRG Y + R LC AG+ ++A + ++ + K V++Y+ +I C + +
Sbjct: 65 QRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRV 124
Query: 213 QNAAYIFNQMK--NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270
+A IF M C P++VT N ++K EA LF+ MA K
Sbjct: 125 DDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMA------------K 172
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
P++ +++T+LD R D+ +++ M+
Sbjct: 173 AGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVE 207
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 116/278 (41%), Gaps = 24/278 (8%)
Query: 68 VRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIPNA 126
VR W G +Q+G + S TY ++ + L YE F+++Q + Y P+
Sbjct: 22 VRLFDWLG--------RQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDD 73
Query: 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK 186
Y +++ L + G+ D+A + + G+ + Y + C A + ++AL
Sbjct: 74 FTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKT 133
Query: 187 ICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHG 244
+ P VV++ L++ + A +F M K C PN+++ + ++ + G
Sbjct: 134 MSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAG 193
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
+EA +L++EM E S +PD+ + + + R + ++M+
Sbjct: 194 RLDEACRLWEEMVEKS------------CVPDLVAYTSFVTGLCKANRVAEACDCCRKMV 241
Query: 305 HHGLHFNAKRHLRMILDASRAGKVELLEITW-EHLARA 341
G +A +I + G E + EHL R+
Sbjct: 242 TKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRS 279
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 99/251 (39%), Gaps = 51/251 (20%)
Query: 1 MSSY---PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDI 57
M++Y PD V Y ++ L + G + D+++ M K G PD
Sbjct: 365 MANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMS-------KEGVF--------PDS 409
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
++LNA + + + A L+ +K +G P TY +++ + G+ + F K
Sbjct: 410 FTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAK 469
Query: 118 -VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL----AR--- 169
V P+ +Y +++ L R G+ A + ++M +RG++ LY+ L AR
Sbjct: 470 MVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGL 529
Query: 170 ------------C-------------LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204
C LC AGK E+A ++++ +Y +++
Sbjct: 530 EDLALELLKTSLCKPDFVMHKMVVDGLCKAGKAEDACEVVERMADAGFPADAFTYINVVR 589
Query: 205 ACLDSGNIQNA 215
G + A
Sbjct: 590 GLRKLGKVDKA 600
>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
Length = 676
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 137/306 (44%), Gaps = 25/306 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V Y+A ++ R + AF VL+++ +G KP+ T+ +++ + G +
Sbjct: 249 PNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWMERAFRL 308
Query: 115 FRKVQKS--YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F K+ KS Y PN Y V++ +EGK A + M +G+ + Y L C
Sbjct: 309 FLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHC 368
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNL-- 230
G + A M+K+ P + +Y +I G IQ A + ++ S L
Sbjct: 369 KGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEA---YKVLRMATSQGLHL 425
Query: 231 --VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
VT I++ + + G A+ LF++MAE S H PDI+T+ T++
Sbjct: 426 DKVTYTILITEHCKQGHITCALDLFKQMAEKSCH------------PDIHTYTTIIAMYC 473
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEITWEHLARADRI 344
+++ + + ++ + L GL + + MI R GK +++ E +H D I
Sbjct: 474 QQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSI 533
Query: 345 TPPALI 350
T ALI
Sbjct: 534 TYGALI 539
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 15/286 (5%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
+ R + PD + A++ C R ++E A +L + QG + T +V+
Sbjct: 170 MARAAGGVRPDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQ 229
Query: 106 GKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G++ V + FR++ + PN + Y ++ L G +A +E+M +G+ + +
Sbjct: 230 GRFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTH 289
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
L LC G E A K+ K ++ KP V +YT +I G + A + +M
Sbjct: 290 TSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMV 349
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ +PN T ++ + + G F+ A +L +M + +P+IYT+N
Sbjct: 350 EQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEG------------FLPNIYTYNA 397
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
++ + + + V + GLH + + +I + + G +
Sbjct: 398 IIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHI 443
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 90/207 (43%), Gaps = 12/207 (5%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ +++ LV REG+ +EA + + M +G +A + R C G+
Sbjct: 179 PDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVTDL 238
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ ++ P +V+Y+ I + G ++ A ++ +M PN+ T ++ +
Sbjct: 239 FRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCK 298
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G E A +LF ++ + S++ P+++T+ M+ E + E++ R
Sbjct: 299 IGWMERAFRLFLKLVKSSSY-----------KPNVHTYTVMIGGYCKEGKLARAEMLLGR 347
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
M+ GL N + +I + G +
Sbjct: 348 MVEQGLAPNTNTYTTLIHGHCKGGSFD 374
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/314 (20%), Positives = 118/314 (37%), Gaps = 58/314 (18%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLER 48
M + P+ V Y + L + G++K+ F V++ M SL K G +ER
Sbjct: 245 MGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWMER 304
Query: 49 W---------DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM 99
+P++ Y ++ + + A +L ++ +QG P+ TY ++
Sbjct: 305 AFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLI 364
Query: 100 EVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
G ++ +E K++ + ++PN Y ++ ++GK EA + +G+
Sbjct: 365 HGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLH 424
Query: 159 GSAALYYDLARCLCSAGKCEEAL---MQM------------------------------- 184
Y L C G AL QM
Sbjct: 425 LDKVTYTILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQL 484
Query: 185 -DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
DK + P +YT +I G + +A +F +M ++ C P+ +T ++ + +
Sbjct: 485 FDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSLCK 544
Query: 243 HGLFEEAMKLFQEM 256
EEA LF+ M
Sbjct: 545 ESRLEEARALFETM 558
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/232 (18%), Positives = 98/232 (42%), Gaps = 19/232 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T Y ++ + G F++++ M+ LE + P+I YNA++
Sbjct: 355 PNTNTYTTLIHGHCKGGSFDRAFELMNKMK-----------LEGF----LPNIYTYNAII 399
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
++ + + A+ VL+ QG TY +++ G + F+++ +KS
Sbjct: 400 GGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKSCH 459
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y ++ ++ + +++ + G+V + Y + C GK AL
Sbjct: 460 PDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKV 519
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNI 235
+++ + P ++Y LI + ++ A +F M + +LV C++
Sbjct: 520 FERMVQHGCLPDSITYGALISSLCKESRLEEARALFETMLD---KHLVPCDV 568
>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 137/310 (44%), Gaps = 31/310 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + + + G +KE V D M K G ++P+ V YN+++
Sbjct: 293 PDVYTFNILVNAFCKDGKMKEGKTVFDMM-------MKQG--------IKPNFVTYNSLM 337
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ K+ A + + Q G P +Y +++ K++ F+++ +K+ I
Sbjct: 338 DGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNII 397
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ L + G+ A+ V+ M RG+ + Y + LC + ++A+
Sbjct: 398 PDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIAL 457
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
+ K +P + +Y+ LI+ SG +++A +F + K + + ++ IM++ +
Sbjct: 458 LTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGY-NLDVYAYTIMIQGFC 516
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
GLF EA+ L +M ++ IPD T+ ++ + + D E + +
Sbjct: 517 VEGLFNEALALLSKMEDNG------------CIPDAKTYEIIILSLFKKDENDMAEKLLR 564
Query: 302 RMLHHGLHFN 311
M+ GL N
Sbjct: 565 EMIARGLPLN 574
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/361 (21%), Positives = 151/361 (41%), Gaps = 36/361 (9%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPK--KKFKTGTL------------ 46
M PDT+ + +++ L G I++ F D + +L + GTL
Sbjct: 149 MGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRA 208
Query: 47 -----ERWDPRL-EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
+R D L +P++V+YN ++++ + K AF + ++ +G P TY ++
Sbjct: 209 ALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALIS 268
Query: 101 VMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
GK + F K + ++ P+ + +LVN ++GK E + + M ++GI
Sbjct: 269 GFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKP 328
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219
+ Y L C + +A + + + P + SY+ +I A +F
Sbjct: 329 NFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLF 388
Query: 220 NQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI 277
+M KN P++VT + ++ + G A++L +M + V P+I
Sbjct: 389 KEMHRKNII-PDVVTYSSLIDGLSKSGRISYALQLVDQMHDRG------------VPPNI 435
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEH 337
T+N++LDA + D + + G + + +I ++GK+E +E
Sbjct: 436 CTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFED 495
Query: 338 L 338
L
Sbjct: 496 L 496
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/257 (20%), Positives = 90/257 (35%), Gaps = 59/257 (22%)
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F R ++++ P A + ++ +L + + + ME RGI + L C C
Sbjct: 73 FNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQ 132
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA----------AYIFNQMK 223
G A KI K+ P +++T L + G IQ A + F+Q+
Sbjct: 133 LGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQIS 192
Query: 224 --------------------------NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
N PN+V N ++ + + L EA LF EM
Sbjct: 193 YGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMV 252
Query: 258 EDS---NHINREYDKKGLVI--------------------PDIYTFNTMLDACAAEKRWD 294
+ + G I PD+YTFN +++A + +
Sbjct: 253 SKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMK 312
Query: 295 DLELVYKRMLHHGLHFN 311
+ + V+ M+ G+ N
Sbjct: 313 EGKTVFDMMMKQGIKPN 329
>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 586
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 142/337 (42%), Gaps = 30/337 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L + G+ ++ SM +PD+VVY +++
Sbjct: 172 PNVVTYGTLINGLCKVGNTNAAIRLLRSMEQ---------------GNCQPDVVVYTSII 216
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
++ + +Q AF + ++ QG P TY ++ + ++ V ++ S I
Sbjct: 217 DSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIM 276
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + +V+ L +EGK EA V+ M RG+ + Y L C + +EA+
Sbjct: 277 PDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKV 336
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
D + P V+SY LI + A Y+F +M + PN VT N ++
Sbjct: 337 FDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHX-CH 395
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G ++A+ LF EM IPD+ T+ +LD + D+ + K
Sbjct: 396 VGRLQDAIALFHEMVAHGQ------------IPDLATYRILLDYLCKKSHLDEAMALLKT 443
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
+ + + + + +I RAG++E + +L+
Sbjct: 444 IEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLS 480
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 127/309 (41%), Gaps = 29/309 (9%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P TV + + ++ + +F + + M S + PD+
Sbjct: 63 MHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSF---------------GIPPDVYTL 107
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQ 119
N ++N+ + AF VL ++ + G +P T+ ++ + GK F K +
Sbjct: 108 NILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIG 167
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ + PN + Y L+N L + G T+ A+ + ME+ +Y + LC + E
Sbjct: 168 EGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTE 227
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVK 238
A K+ P + +YT LI + + ++ + NQM N P++V + +V
Sbjct: 228 AFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVD 287
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
A + G EA + M +G V P++ T+N ++D + D+
Sbjct: 288 ALCKEGKITEAHDVVDMMI-----------IRG-VEPNVVTYNALMDGHCLQSEMDEAVK 335
Query: 299 VYKRMLHHG 307
V+ M+H+G
Sbjct: 336 VFDTMVHNG 344
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 121/273 (44%), Gaps = 21/273 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL--------------ER 48
PD V + ++ L + G I E DV+D M R + L +
Sbjct: 277 PDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKV 336
Query: 49 WDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+D + P+++ YN ++N + ++ + A ++ +++ Q+ P+ TY +M
Sbjct: 337 FDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHV 396
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
+ + F V IP+ Y++L++ L ++ DEA++ ++ +E + +Y
Sbjct: 397 GRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIY 456
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK- 223
+ +C AG+ E A + +P V +YT +I G + A +F +M
Sbjct: 457 TIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDG 516
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
N CSP+ T N + + L++ A++L QEM
Sbjct: 517 NGCSPDGCTYNTITQGLLQNKEALRAIQLLQEM 549
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/327 (20%), Positives = 131/327 (40%), Gaps = 30/327 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y SI +L + + E F++ M + PDI Y +++
Sbjct: 207 PDVVVYTSIIDSLCKDRQVTEAFNLFSKMVG---------------QGISPDIFTYTSLI 251
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYI 123
++ +W+ +L Q+ P + V++ + GK ++ + +
Sbjct: 252 HSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVE 311
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L++ + + DEAV + M G + Y L C + ++A
Sbjct: 312 PNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYL 371
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLE 242
+++C+ P V+Y L+ C G +Q+A +F++M P+L T I++ +
Sbjct: 372 FEEMCQKELIPNTVTYNTLMHXC-HVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCK 430
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+EAM L + + E SN + PDI + ++D + ++
Sbjct: 431 KSHLDEAMALLKTI-EGSN-----------MDPDIQIYTIVIDGMCRAGELEAARDIFSN 478
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
+ GL N + + MI R G ++
Sbjct: 479 LSSKGLRPNVRTYTIMINGLCRRGLLD 505
>gi|297725689|ref|NP_001175208.1| Os07g0491500 [Oryza sativa Japonica Group]
gi|255677777|dbj|BAH93936.1| Os07g0491500, partial [Oryza sativa Japonica Group]
Length = 654
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 138/308 (44%), Gaps = 31/308 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P + Y + L AG + +V D+M + + ++ PD+V YN ++
Sbjct: 216 PSRLIYNCLLDGLVNAGLLDTAVNVFDAMST--------------EDQVRPDVVSYNILI 261
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
R + A L ++++Q + P TY +M+ + G + + F+++++ +
Sbjct: 262 KGYCRAGRAHDAMARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGM 321
Query: 124 PNAL---AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
N + AY +++ L ++GK E ++ E M +RG +AA+Y L + G+ +EA
Sbjct: 322 GNDIPQHAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEA 381
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKA 239
+ +++ K V+Y ++ G + A F + + N + ++
Sbjct: 382 MALFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDG 441
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ + G+ +++ +LF+EM KG V PD Y +N ++D A R DD +
Sbjct: 442 FGKAGMVDQSKELFEEMI-----------AKGFV-PDSYCYNVLIDGLAKSGRMDDACAL 489
Query: 300 YKRMLHHG 307
YKRM G
Sbjct: 490 YKRMEDDG 497
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 2/237 (0%)
Query: 29 VIDSMRSLPKKKFKTGTLERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG 87
+IDSM ++K ER D L+ D V Y ++N R + + A + +++G
Sbjct: 368 LIDSMGKFGREKEAMALFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKG 427
Query: 88 QKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAV 146
+A Y +++ G + E F + + K ++P++ Y VL++ L + G+ D+A
Sbjct: 428 IAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDAC 487
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
+ + ME G + Y L L K EEAL D + P ++ L
Sbjct: 488 ALYKRMEDDGCDQTVYTYTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGL 547
Query: 207 LDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
SG A I +++ M+ + G F++A KL + + I
Sbjct: 548 CLSGKFSRACRILDELAPMGVIPETAHEDMINVLCKAGRFKQACKLADGIVQKGREI 604
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 4/202 (1%)
Query: 60 YNAVLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
Y V+ A C K +EG V +++ ++G +A Y +++ M G+ F ++
Sbjct: 330 YVLVIGALCKDGKPFEG-MAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFERM 388
Query: 119 QKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+ S + +++ Y V+VN L R GK DEAV+ + +GI +A Y L AG
Sbjct: 389 KDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMV 448
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIM 236
+++ +++ P Y LI SG + +A ++ +M+ + C + T I+
Sbjct: 449 DQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTIL 508
Query: 237 VKAYLEHGLFEEAMKLFQEMAE 258
+ + EEA+K + M +
Sbjct: 509 IDGLFKEHKNEEALKFWDAMID 530
>gi|34393621|dbj|BAC83297.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 657
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 138/308 (44%), Gaps = 31/308 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P + Y + L AG + +V D+M + + ++ PD+V YN ++
Sbjct: 219 PSRLIYNCLLDGLVNAGLLDTAVNVFDAMST--------------EDQVRPDVVSYNILI 264
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
R + A L ++++Q + P TY +M+ + G + + F+++++ +
Sbjct: 265 KGYCRAGRAHDAMARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGM 324
Query: 124 PNAL---AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
N + AY +++ L ++GK E ++ E M +RG +AA+Y L + G+ +EA
Sbjct: 325 GNDIPQHAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEA 384
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKA 239
+ +++ K V+Y ++ G + A F + + N + ++
Sbjct: 385 MALFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDG 444
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ + G+ +++ +LF+EM KG V PD Y +N ++D A R DD +
Sbjct: 445 FGKAGMVDQSKELFEEMI-----------AKGFV-PDSYCYNVLIDGLAKSGRMDDACAL 492
Query: 300 YKRMLHHG 307
YKRM G
Sbjct: 493 YKRMEDDG 500
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 2/237 (0%)
Query: 29 VIDSMRSLPKKKFKTGTLERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG 87
+IDSM ++K ER D L+ D V Y ++N R + + A + +++G
Sbjct: 371 LIDSMGKFGREKEAMALFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKG 430
Query: 88 QKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAV 146
+A Y +++ G + E F + + K ++P++ Y VL++ L + G+ D+A
Sbjct: 431 IAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDAC 490
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
+ + ME G + Y L L K EEAL D + P ++ L
Sbjct: 491 ALYKRMEDDGCDQTVYTYTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGL 550
Query: 207 LDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
SG A I +++ M+ + G F++A KL + + I
Sbjct: 551 CLSGKFSRACRILDELAPMGVIPETAHEDMINVLCKAGRFKQACKLADGIVQKGREI 607
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 4/202 (1%)
Query: 60 YNAVLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
Y V+ A C K +EG V +++ ++G +A Y +++ M G+ F ++
Sbjct: 333 YVLVIGALCKDGKPFEG-MAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFERM 391
Query: 119 QKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+ S + +++ Y V+VN L R GK DEAV+ + +GI +A Y L AG
Sbjct: 392 KDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMV 451
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIM 236
+++ +++ P Y LI SG + +A ++ +M+ + C + T I+
Sbjct: 452 DQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTIL 511
Query: 237 VKAYLEHGLFEEAMKLFQEMAE 258
+ + EEA+K + M +
Sbjct: 512 IDGLFKEHKNEEALKFWDAMID 533
>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
Length = 948
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 138/282 (48%), Gaps = 29/282 (10%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
E ++V++N V+ C+ + A + + + +G +P A TY ++M + G+ +
Sbjct: 308 ELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVR 367
Query: 114 FFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R+++K + PN + Y +++++ + G D+ + +E+M +G+ ++ Y + LC
Sbjct: 368 LLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALC 427
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQMKNFCSPNLV 231
G+ +EA+ + ++ P + SY +I ++ ++ A ++F N ++ N +
Sbjct: 428 KDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGI 487
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQE-------------------MAEDSNHINR------E 266
T N ++ A L G +++A++L +E M +D N ++R E
Sbjct: 488 TYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGN-VDRSLVLLEE 546
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+KG + P+ ++N ++ E+R D + K+ML+ GL
Sbjct: 547 MAEKG-IKPNNVSYNILISELCKERRVRDALELSKQMLNQGL 587
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/264 (20%), Positives = 119/264 (45%), Gaps = 14/264 (5%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV- 118
YN ++ A + + + A ++Q+++ QG P +Y ++ + + F +
Sbjct: 419 YNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLL 478
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
++ + N + Y +++ L R+G+ +AV ++M G Y L + +C G +
Sbjct: 479 EEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVD 538
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMV 237
+L+ ++++ + KP VSY LI +++A + QM N +P++VT N ++
Sbjct: 539 RSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLI 598
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ G A+ L +++ ++ H PDI T+N ++ + DD
Sbjct: 599 NGLCKMGWMHAALNLLEKLHNENVH------------PDIITYNILISWHCKVRLLDDAA 646
Query: 298 LVYKRMLHHGLHFNAKRHLRMILD 321
++ R + +R ++++ D
Sbjct: 647 MLLNRAMAAVCPVGDRRIMQILPD 670
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/313 (20%), Positives = 123/313 (39%), Gaps = 60/313 (19%)
Query: 76 AFWVLQQLKQQ-GQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIP-NALAYKVL 132
A +L QL ++ G +PS +Y +V+ V+ + +R+ V + +P + V
Sbjct: 122 ALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVA 181
Query: 133 VNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVAN 192
L R G+ +EA++ + M R G V A LY + LC G EA ++++ +
Sbjct: 182 ARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGC 241
Query: 193 KPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSP----------------------- 228
V ++ +++ G ++ AA + ++ M C P
Sbjct: 242 AADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARA 301
Query: 229 --------NLVTCNIMVKAYLEHGLFEEAMKLFQEMA----------------------- 257
N+V N ++ L G EA +L++ M
Sbjct: 302 MLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGR 361
Query: 258 -EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316
+ + RE +KKG P++ T+ +L + WDD + + M GL N++ +
Sbjct: 362 ISSAVRLLREMEKKGFA-PNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYN 420
Query: 317 RMILDASRAGKVE 329
MI + G+++
Sbjct: 421 GMIYALCKDGRMD 433
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 81/359 (22%), Positives = 134/359 (37%), Gaps = 62/359 (17%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD V+Y V++A + A +L ++ G T+ V+ M G+
Sbjct: 208 PDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARL 267
Query: 115 F-RKVQKSYIPNALAYKVLVNTLWR-------------------------------EGKT 142
R + K +P + Y L+ L R EGK
Sbjct: 268 VDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKL 327
Query: 143 DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGL 202
EA E M +G A Y L LC G+ A+ + ++ K P VV+YT +
Sbjct: 328 AEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIV 387
Query: 203 IQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM----- 256
+ + +G + + +M + N N M+ A + G +EAM L QEM
Sbjct: 388 LHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGC 447
Query: 257 -------------------AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
E++ H+ ++G+V I T+NT++ A + RW D
Sbjct: 448 NPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGI-TYNTIIHALLRDGRWQDAV 506
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLEITWEHLARADRITPPALIKE 352
+ K M+ HG + + +I + G V+ LLE E + + ++ LI E
Sbjct: 507 RLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISE 565
>gi|297723955|ref|NP_001174341.1| Os05g0313900 [Oryza sativa Japonica Group]
gi|255676233|dbj|BAH93069.1| Os05g0313900 [Oryza sativa Japonica Group]
Length = 1070
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 38/280 (13%)
Query: 15 VTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERW-DPRLEPDIVVYNAVLNACVRRKQW 73
++LG G I D+I + ++ + + G + D L P YN++ RRK
Sbjct: 467 ISLGCKGKILMFNDLIHELCNMDRLEEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKDP 526
Query: 74 EGAFWVLQQLKQQGQKP-----------------------------------SATTYGLV 98
+ A +L++++ G P TY
Sbjct: 527 KAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIGFLPDIVTYSAA 586
Query: 99 MEVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
M M G+ + FR + K Y+P+ +A+ +L+N + K DEA +E+M +G+
Sbjct: 587 MNGMCNTGEVDDALHLFRDISCKYYLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGL 646
Query: 158 VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217
S Y + C G+ E+A+ +DK+ +P V++YT LI +G A
Sbjct: 647 FPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIK 706
Query: 218 IFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
++ +M+ C+PN + + + G E A+ F+EM
Sbjct: 707 LWCEMREKGCAPNNIAYTAFINGLRKCGRIETALTYFEEM 746
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/330 (20%), Positives = 127/330 (38%), Gaps = 61/330 (18%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVL--------QQLKQQGQKPSATTYGLVMEVMLA 104
+ PD+ + V+ A R EG F V+ + LK P Y +V+E ++
Sbjct: 346 VAPDVRLLKKVIEAFCR----EGDFAVIGPFINENAEYLKSGSVVP---LYNVVLEELVH 398
Query: 105 CGKYNLVYEFFRK--------------------VQKSYIPNALAYKVLVNTLWREGKTDE 144
CG+ Y+ R +++ PN+ ++ ++V L + K D
Sbjct: 399 CGEVEAAYQLLRSMVCGGQAVNNDVAGGAHMLHIREDAKPNSDSFNIVVCGLCKVKKLDM 458
Query: 145 AVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204
A++ +DM G G ++ DL LC+ + EE +++ + P +Y L
Sbjct: 459 ALALTKDMISLGCKGKILMFNDLIHELCNMDRLEEGYGIFNQMKDLGLTPSEFTYNSLFY 518
Query: 205 ACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM------- 256
+ + A + +M+ N P + C MV+ G EA++ M
Sbjct: 519 GICRRKDPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIGFLP 578
Query: 257 -----------------AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+D+ H+ R+ K +PD+ N +++ + D+ + +
Sbjct: 579 DIVTYSAAMNGMCNTGEVDDALHLFRDISCK-YYLPDVVAHNILINGFRKSSKLDEAQKI 637
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ ML GL + + MI + G++E
Sbjct: 638 MEEMLEKGLFPSVVTYNLMIDVCCKTGRIE 667
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 73/154 (47%), Gaps = 16/154 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD VA+ + ++ + E +++ M L K F P +V YN ++
Sbjct: 613 PDVVAHNILINGFRKSSKLDEAQKIMEEM--LEKGLF-------------PSVVTYNLMI 657
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ C + + E A L ++ + ++P+ TY +++ + G+ + + + ++ +K
Sbjct: 658 DVCCKTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCA 717
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
PN +AY +N L + G+ + A++ E+M +G
Sbjct: 718 PNNIAYTAFINGLRKCGRIETALTYFEEMVTKGF 751
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 103/235 (43%), Gaps = 25/235 (10%)
Query: 96 GLVMEVMLACGKYNLVYEFFRKVQKSY--IPNALAYKVLVNTLWREGKTDEAVSAVEDME 153
G ++ + A G + F + S+ PN+ Y L++ L + G+ D+A + + +M
Sbjct: 142 GFLLRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQARLREMV 201
Query: 154 RRGIVGSAALY--YDLARCLCSAGKCEEA---LMQMDKICKVANKPLVVSYTGLIQACLD 208
R GS Y L RC C+AG+ ++A +M ++ V L T L+ A
Sbjct: 202 ARCGDGSVDKYTLTSLLRCYCNAGRPDDANDVFQRMSELGWVDEHVL----TTLMVAFSK 257
Query: 209 SGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
G + A + M+ + T +++V + + G ++AM +F +M
Sbjct: 258 WGKVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVS--------- 308
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA 322
G V+ D+ ++ +++ +K ++K M G+ + R L+ +++A
Sbjct: 309 --YGFVV-DLAMYSVLIEGLCQQKDIARAVKLFKEMKSSGVAPDV-RLLKKVIEA 359
>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 128/308 (41%), Gaps = 35/308 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ L + G +KE + M + D+ YN+++
Sbjct: 179 PDVVVYSSLMDGLCRFGRLKEALEFFKEMEG---------------RGISADVYTYNSLI 223
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ R W+ W L + +G P A T+ ++++ + GK + + K
Sbjct: 224 HGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKE 283
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ L Y L+N L G+ ++A E + RGI + Y L C K +EA
Sbjct: 284 PDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRL 343
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP--NLVTCNIMVKAYL 241
+++ KP V+Y LI A SG ++ A +F +M+ C L T +++
Sbjct: 344 FEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQT-CGQFLKLSTYCVLLDGLC 402
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAA---EKRWDDLE 297
++G EEA+ LFQ + + + P+I F+ +LD C A E+ W +
Sbjct: 403 KNGHLEEAIDLFQSIKKTEHK------------PNIEVFSILLDGMCRAGKLEEAWKQFD 450
Query: 298 LVYKRMLH 305
+ K L
Sbjct: 451 EISKNGLE 458
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 121/254 (47%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ L G +++ + +S+ D ++ ++ YN ++
Sbjct: 284 PDILTYNTLMNGLCLVGQLEDATKLFESLA---------------DRGIKLNVFSYNILI 328
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
N + ++ + AF + ++++ +G KPS TY ++ + G+ + F ++Q
Sbjct: 329 NGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQF 388
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
Y VL++ L + G +EA+ + +++ + ++ L +C AGK EEA Q
Sbjct: 389 LKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQ 448
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
D+I K +P ++Y LI + G + A + QM + C P+ +T N++++ L+
Sbjct: 449 FDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLK 508
Query: 243 HGLFEEAMKLFQEM 256
EA++L +EM
Sbjct: 509 ENEIHEAIQLLEEM 522
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 113/262 (43%), Gaps = 15/262 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
EPD V ++ A + ++ ++G A TYG+++ + K L
Sbjct: 73 FEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAI 132
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ K++ + + Y +++++L ++G T EA+ +M GI+ +Y L LC
Sbjct: 133 KLHEKMKGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLC 192
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNL 230
G+ +EAL ++ V +Y LI +G + + N M + F SP+
Sbjct: 193 RFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGF-SPDA 251
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T I++ + G EA ++ + M +H +E PDI T+NT+++
Sbjct: 252 FTFTILIDGLCKEGKVGEAQQILELM----HHKGKE--------PDILTYNTLMNGLCLV 299
Query: 291 KRWDDLELVYKRMLHHGLHFNA 312
+ +D +++ + G+ N
Sbjct: 300 GQLEDATKLFESLADRGIKLNV 321
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 105/238 (44%), Gaps = 18/238 (7%)
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+++ + P+A+ LV +W E +AV ++M +G+ G A Y L LC A K
Sbjct: 69 LKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKT 128
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIM 236
A+ +K+ K K V +Y +I + G A +F++M P++V + +
Sbjct: 129 GLAIKLHEKM-KGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSL 187
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ G +EA++ F+EM + +G + D+YT+N+++ + W ++
Sbjct: 188 MDGLCRFGRLKEALEFFKEM-----------EGRG-ISADVYTYNSLIHGLSRAGLWKEV 235
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPALI 350
M+ G +A +I + GKV ++LE+ D +T L+
Sbjct: 236 TWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLM 293
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 86/181 (47%), Gaps = 2/181 (1%)
Query: 46 LERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E P+ L+P V YN ++ A + + A + +++ GQ +TY ++++ +
Sbjct: 344 FEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCK 403
Query: 105 CGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + F+ ++K+ + PN + +L++ + R GK +EA +++ + G+
Sbjct: 404 NGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIA 463
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L LC+ G EA+ + ++ + P +++ +IQ L I A + +M+
Sbjct: 464 YNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMR 523
Query: 224 N 224
N
Sbjct: 524 N 524
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 67/142 (47%), Gaps = 20/142 (14%)
Query: 17 LGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGA 76
L + GH++E D+ S++ K P+I V++ +L+ R + E A
Sbjct: 401 LCKNGHLEEAIDLFQSIKKTEHK---------------PNIEVFSILLDGMCRAGKLEEA 445
Query: 77 FWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL---VYEFFRKVQKSYIPNALAYKVLV 133
+ ++ + G +P Y +++ + C K L V ++ +K +P+++ + V++
Sbjct: 446 WKQFDEISKNGLEPDTIAYNILINGL--CNKGMLSEAVKLLWQMEEKGCLPDSITFNVII 503
Query: 134 NTLWREGKTDEAVSAVEDMERR 155
L +E + EA+ +E+M R
Sbjct: 504 QNLLKENEIHEAIQLLEEMRNR 525
>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 109/242 (45%), Gaps = 14/242 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + L PD++ YN+++ R + A+ +L +K++G P TYG ++ +
Sbjct: 317 EMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSN 376
Query: 107 KYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ F + + + N + Y VL++ + GK DEA E M + +A +
Sbjct: 377 RVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFN 436
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
L LCSAG +EAL D++ K+ KP V ++ LI L G+ +A +M +
Sbjct: 437 ALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSS 496
Query: 226 CS-PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
P T N ++ Y G +EA + +M E+ V PD +T+ +++
Sbjct: 497 GEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEG------------VPPDDFTYTSLI 544
Query: 285 DA 286
A
Sbjct: 545 KA 546
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 125/300 (41%), Gaps = 19/300 (6%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
V YN +++ + + A + ++K P+ TY +++ + + +
Sbjct: 259 VSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKNVHKAMGLLDEM 318
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
++++ +P+ + Y L+ R G D A + M+ RG+V Y LC + +
Sbjct: 319 LERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRV 378
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNI 235
EEA D + + V+ Y+ LI G + A +F +M KN CSPN T N
Sbjct: 379 EEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKN-CSPNAYTFNA 437
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
++ G +EA+ LF +M K GL P +YTFN ++ + +DD
Sbjct: 438 LIHGLCSAGNLKEALSLFDQMV-----------KMGLK-PTVYTFNILIGRMLKQGDFDD 485
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITW----EHLARADRITPPALIK 351
++M+ G A+ + I AGKV+ E E D T +LIK
Sbjct: 486 AHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIK 545
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 91/406 (22%), Positives = 168/406 (41%), Gaps = 53/406 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y S+ +AGH+ + ++ M+ ER L PD Y +
Sbjct: 325 PDLITYNSLIAGQCRAGHLDSAYRLLSLMK------------ERG---LVPDQRTYGCFI 369
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + E A + L ++G + Y ++++ GK + F K + K+
Sbjct: 370 DFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCS 429
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PNA + L++ L G EA+S + M + G+ + + L + G ++A
Sbjct: 430 PNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKC 489
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ K+ KP+ +Y I+ +G +Q A + QMK P+ T ++KAY +
Sbjct: 490 LQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGK 549
Query: 243 HGLFEEAMKLFQEM----AEDSNH-----INREYDKKGLV-------IPDIYTFNTMLDA 286
GL A + + M E S+H I + +DK+ +V + + F +
Sbjct: 550 LGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDV--- 606
Query: 287 CAAEKRWDDLEL-----VYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
W +E +++ M HG ++K + ++I S KVE L I + L +
Sbjct: 607 -PGSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLI---SGICKVENLGIALKLLDQM 662
Query: 342 DR--ITPPALIKERF---CNRLENKDYGSAISCLVSHPVSG-SPEF 381
+ I+P ++ C +L+ YG A + + SG SP+
Sbjct: 663 QKEGISPSEMVFNAVISCCCKLQK--YGEAANIVEDMICSGHSPQL 706
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 113/259 (43%), Gaps = 27/259 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y S+ G+ G FDV+ SM +D EP + +++
Sbjct: 535 PDDFTYTSLIKAYGKLGLTYSAFDVLKSM---------------FDADCEPSHHTFLSLI 579
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLV-MEVMLACGKYNLVYEFFRKVQK-SY 122
KQ +V+++ + G + S + +G V M ++++V E F +++K
Sbjct: 580 ------KQLFDKRYVVEKSGETGVE-SVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGC 632
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P++ Y+ L++ + + A+ ++ M++ GI S ++ + C C K EA
Sbjct: 633 TPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAAN 692
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPN--LVTCNIMVKAY 240
++ + + P + LI + G + +F +++ C N + I++
Sbjct: 693 IVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKLRG-CGYNDDEIAWKILIDGM 751
Query: 241 LEHGLFEEAMKLFQEMAED 259
L+ GL EE +LF+EM ++
Sbjct: 752 LKQGLVEEFSQLFEEMEKN 770
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 78/388 (20%), Positives = 155/388 (39%), Gaps = 30/388 (7%)
Query: 27 FDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ 86
F ++D M L T LE + + DI +N ++N + + A + ++ Q
Sbjct: 170 FGLVDEMNQL-----YTEMLEEF---VSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQA 221
Query: 87 GQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAV 146
G P Y +L + V FR ++ N ++Y L++ L G+ DEAV
Sbjct: 222 GLSPD---YFTSTSFILGYCRSKDVDSAFRVFEEMPNRNEVSYNQLIHGLCEAGRIDEAV 278
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
S M+ + Y L + LC +A+ +D++ + P +++Y LI
Sbjct: 279 SLFVRMKDDCCYPNVYTYTALIKGLCRK-NVHKAMGLLDEMLERNLVPDLITYNSLIAGQ 337
Query: 207 LDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
+G++ +A + + MK P+ T + + EEA +LF + E+
Sbjct: 338 CRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEG----- 392
Query: 266 EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRA 325
V ++ ++ ++D + D+ ++++ML NA +I A
Sbjct: 393 -------VSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSA 445
Query: 326 GKVELLEITWEHLARADRITPPALIKERFCNR-LENKDYGSAISCLVSHPVSGSPEFSR- 383
G ++ ++ + + + P R L+ D+ A CL SG +R
Sbjct: 446 GNLKEALSLFDQMVKMG-LKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVART 504
Query: 384 -NAWLKFFKENSQ-HFGQDTLIQLLHEA 409
NA+++ + + +D ++Q+ E
Sbjct: 505 YNAFIEVYCSAGKVQEAEDMMVQMKEEG 532
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 61/308 (19%), Positives = 107/308 (34%), Gaps = 61/308 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKK------------FKTGTLERWDPR 52
P+ + ++ L AG++KE + D M + K K G +
Sbjct: 430 PNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKC 489
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L+ P YNA + + + A ++ Q+K++G P TY +++ A
Sbjct: 490 LQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIK---A 546
Query: 105 CGKYNLVYEFFRKVQKSYI----PNALAYKVLVNTL------------------------ 136
GK L Y F ++ + P+ + L+ L
Sbjct: 547 YGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDV 606
Query: 137 -----WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA 191
W+ + D + E+ME+ G + Y L +C AL +D++ K
Sbjct: 607 PGSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEG 666
Query: 192 NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC---SPNLVTCNIMVKAYLEHGLFEE 248
P + + +I C AA I M C SP L C ++ E G E
Sbjct: 667 ISPSEMVFNAVISCCCKLQKYGEAANIVEDM--ICSGHSPQLEHCKTLICGLYEEGETER 724
Query: 249 AMKLFQEM 256
+F+++
Sbjct: 725 GNSVFKKL 732
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P +V+NAV++ C + +++ A +++ + G P ++ + G+
Sbjct: 667 ISPSEMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGN 726
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
F+K++ Y + +A+K+L++ + ++G +E E+ME+ G S Y L +
Sbjct: 727 SVFKKLRGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNGCNFSPRTYSILTQ 784
>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 701
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 117/253 (46%), Gaps = 13/253 (5%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVN 134
A ++ ++ QG PS+ T V+E+ + G F ++ + +P++ +YK++V
Sbjct: 166 AVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVI 225
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194
+R+GK EA + M +RG + A + LC G A+ K+ + KP
Sbjct: 226 GCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKP 285
Query: 195 LVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253
++++T LI G+I+ A + +M +N PN+ T ++ + G E+A +LF
Sbjct: 286 NLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLF 345
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK 313
++ + P+++T+ +M+ E + + E+++ RM GL N
Sbjct: 346 LKLVRSDTY-----------KPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVN 394
Query: 314 RHLRMILDASRAG 326
+ +I +AG
Sbjct: 395 TYTTLINGHCKAG 407
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 105/241 (43%), Gaps = 15/241 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD Y ++ C R + + A L + Q+G P T L++ + G N +
Sbjct: 215 PDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWY 274
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
FRK + + PN + + L++ L ++G +A +E+M R G + + L LC
Sbjct: 275 FRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCK 334
Query: 174 AGKCEEALMQMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLV 231
G E+A K+ + KP V +YT +I + A +F++MK PN+
Sbjct: 335 RGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVN 394
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T ++ + + G F A +L M ++ +P+IYT+N +D+ +
Sbjct: 395 TYTTLINGHCKAGSFGRAYELMNLMGDEG------------FMPNIYTYNAAIDSLCKKS 442
Query: 292 R 292
R
Sbjct: 443 R 443
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/330 (20%), Positives = 134/330 (40%), Gaps = 41/330 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + + S+ L + G IK+ F++++ M + G W +P++ + A++
Sbjct: 285 PNLINFTSLIDGLCKKGSIKQAFEMLEEM-------VRNG----W----KPNVYTHTALI 329
Query: 65 NACVRRKQWEGAFWV-LQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSY 122
+ +R E AF + L+ ++ KP+ TY ++ K N F ++ ++
Sbjct: 330 DGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGL 389
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN Y L+N + G A + M G + + Y LC + EA
Sbjct: 390 FPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYE 449
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
++K + V+YT LIQ +I A F +M K ++ NI++ A+
Sbjct: 450 LLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFC 509
Query: 242 EHGLFEEAMKLFQEMA--------EDSNHINREYDKKGLV---------------IPDIY 278
+E+ +LFQ + E + Y K+G + +PD +
Sbjct: 510 RQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSF 569
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
T+ +++ + D+ +Y+ M+ GL
Sbjct: 570 TYGSLISGLCKKSMVDEACKLYEAMIDRGL 599
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 13/208 (6%)
Query: 140 GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSY 199
G+ +EAV V DM+ +G+ S+ + G E A D++ P SY
Sbjct: 161 GRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSY 220
Query: 200 TGLIQACLDSGNIQNA-AYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
++ C G IQ A ++ ++ P+ TC +++ A E+GL A+ F++M +
Sbjct: 221 KLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMID 280
Query: 259 DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRM 318
P++ F +++D + + + M+ +G N H +
Sbjct: 281 LGFK------------PNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTAL 328
Query: 319 ILDASRAGKVELLEITWEHLARADRITP 346
I + G E + L R+D P
Sbjct: 329 IDGLCKRGWTEKAFRLFLKLVRSDTYKP 356
>gi|297807667|ref|XP_002871717.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317554|gb|EFH47976.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 533
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 121/278 (43%), Gaps = 13/278 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P++V Y +L V R E A VL+++ +G P A TY ++M+ G+++
Sbjct: 220 LVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSEAA 279
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++K+ I PN + Y V++ L +E K+ EA + ++M R + ++L + L
Sbjct: 280 TVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLDRSFMPDSSLCCKVIDAL 339
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV 231
C K +EA K+ K P + LI G + A +F++ P+L+
Sbjct: 340 CEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVSEARKLFDEFDKGSIPSLL 399
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ E G EA +L+ +M E P+ +T+N +++ +
Sbjct: 400 TYNTLIAGMCEKGELTEAGRLWDDMFERKCK------------PNAFTYNVLIEGLSKNG 447
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ V + ML G N L + + GK E
Sbjct: 448 NVKEGVRVLEEMLESGCFPNKTTFLILFEGLQKLGKEE 485
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 120/279 (43%), Gaps = 32/279 (11%)
Query: 27 FDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ 86
FD++ +M K+ F + P+I N ++ A ++ E A+ VL ++
Sbjct: 169 FDLVHAMFKNSKESFG----------ITPNIFTCNLLVKALCKKNDIESAYKVLDEIPAM 218
Query: 87 GQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEA 145
G P+ TY ++ +A G + + + + P+A+ Y VL++ + G+ EA
Sbjct: 219 GLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSEA 278
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+ ++DME+ I + Y + R LC K EA D++ + P +I A
Sbjct: 279 ATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLDRSFMPDSSLCCKVIDA 338
Query: 206 CLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
+ + A ++ +M KN C P+ + ++ + G EA KLF E + S
Sbjct: 339 LCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVSEARKLFDEFDKGS---- 394
Query: 265 REYDKKGLVIPDIYTFNTML-------DACAAEKRWDDL 296
IP + T+NT++ + A + WDD+
Sbjct: 395 ---------IPSLLTYNTLIAGMCEKGELTEAGRLWDDM 424
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 107/238 (44%), Gaps = 15/238 (6%)
Query: 72 QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY--IPNALAY 129
++E + + ++ G K S + ++ V++ +++LV+ F+ ++S+ PN
Sbjct: 133 RYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTC 192
Query: 130 KVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK 189
+LV L ++ + A ++++ G+V + Y + + G E A ++++
Sbjct: 193 NLLVKALCKKNDIESAYKVLDEIPAMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLD 252
Query: 190 VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEE 248
P ++YT L+ G AA + + M KN PN VT +M++A + E
Sbjct: 253 RGWYPDAITYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGE 312
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306
A +F EM + S +PD ++DA + + D+ ++++ML +
Sbjct: 313 ARNMFDEMLDRS------------FMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKN 358
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 59/285 (20%), Positives = 108/285 (37%), Gaps = 59/285 (20%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSM----------------RSLPKKKFKTGTL- 46
YPD + Y + + G E V+D M R+L K+K K+G
Sbjct: 256 YPDAITYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEK-KSGEAR 314
Query: 47 ----ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
E D PD + V++A + + A + +++ + P ++ +
Sbjct: 315 NMFDEMLDRSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWL 374
Query: 103 LACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G+ + + F + K IP+ L Y L+ + +G+ EA +DM R
Sbjct: 375 CKEGRVSEARKLFDEFDKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMFER------- 427
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
KC KP +Y LI+ +GN++ + +M
Sbjct: 428 -------------KC---------------KPNAFTYNVLIEGLSKNGNVKEGVRVLEEM 459
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
++ C PN T I+ + + G E+A+K+ MA + +++E
Sbjct: 460 LESGCFPNKTTFLILFEGLQKLGKEEDAIKIVS-MAVMNGKVDKE 503
>gi|255660994|gb|ACU25666.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 376
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 137/286 (47%), Gaps = 15/286 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + ++ PD VVYNA+LN R + + F + + + +G + S +++ ++M + G
Sbjct: 15 EIVESKMSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNG 73
Query: 107 KYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K + V + ++KS ++ ++ + +LV+ + G ++++ +E E++G V A Y
Sbjct: 74 KVDEVISIWELMKKSGFVEDSXTFGILVHGFCKNGYINKSLHVLEMAEQKGGVLDAFAYS 133
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+ LC ++A+ ++ + K KP Y LI + + ++A +F +M
Sbjct: 134 AMINGLCKEANFDKAVSVLNGMIKSGCKPNAHVYNTLINGLVAASKFEDAIIVFREMGTM 193
Query: 226 -CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
CSP ++T N ++ + +F EA L +E+ + KGL P + T++ ++
Sbjct: 194 HCSPTIITYNTLINGLCKKEMFGEAYNLVKELLD-----------KGLN-PGVITYSMLM 241
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ + + ++ ++ G + + H +I GK++L
Sbjct: 242 KGLCLDHKVERALQLWNQVTSKGFKPDVRMHNILIHGLCSVGKMQL 287
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 109/242 (45%), Gaps = 14/242 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D Y+A++N + ++ A VL + + G KP+A Y ++ ++A K+ F
Sbjct: 128 DAFAYSAMINGLCKEANFDKAVSVLNGMIKSGCKPNAHVYNTLINGLVAASKFEDAIIVF 187
Query: 116 RKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
R++ + P + Y L+N L ++ EA + V+++ +G+ Y L + LC
Sbjct: 188 REMGTMHCSPTIITYNTLINGLCKKEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLD 247
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
K E AL +++ KP V + LI G +Q A ++ M + C+PNLV+
Sbjct: 248 HKVERALQLWNQVTSKGFKPDVRMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSH 307
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N +++ + + G A+ ++ + + + PDI ++N L + R
Sbjct: 308 NTLMEGFYKDGDIRNALVIWARILRNG------------LEPDIISYNITLKGLCSCNRI 355
Query: 294 DD 295
D
Sbjct: 356 SD 357
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/137 (18%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D L P ++ Y+ ++ + E A + Q+ +G KP + +++ + + G
Sbjct: 224 ELLDKGLNPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVRMHNILIHGLCSVG 283
Query: 107 KYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K L + + + PN +++ L+ +++G A+ + R G+ Y
Sbjct: 284 KMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343
Query: 166 DLARCLCSAGKCEEALM 182
+ LCS + +A++
Sbjct: 344 ITLKGLCSCNRISDAIL 360
>gi|255585035|ref|XP_002533226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526958|gb|EEF29158.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 606
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 132/300 (44%), Gaps = 31/300 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V Y +I L + G +E FD++ M + +L PD YNA+L
Sbjct: 333 DAVTYNTIISGLCKEGRFEEAFDLLAEME---------------EKKLGPDCYTYNAILC 377
Query: 66 ACVRRK-QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
A + Q E AF ++ ++ KP T +++ + G + + F + K
Sbjct: 378 ALADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKA 437
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERR-GIVGSAALYYDLARCLCSAGKCEEALM 182
+A+ Y +++ L +EG+ +EA + +ME + G+V Y + C G+ E+A
Sbjct: 438 IDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQ 497
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYL 241
+K+ + + KP + + L++ G + A +FN + + + VT N ++
Sbjct: 498 FRNKMVEKSFKPDLFTCNILLRGLCREGMLVKALKLFNTWISKGKAIDAVTYNTIISGLC 557
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G FEEA L EM E K G PD YT+N +L A A R + E + K
Sbjct: 558 KEGRFEEAFDLLAEMKE---------KKLG---PDCYTYNAILCALADAGRMEAEEFMSK 605
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 128/282 (45%), Gaps = 20/282 (7%)
Query: 55 PDIVVYNAVLNAC--VRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
PD YN +L+ R + + + L +L + G P TY ++ G+ +
Sbjct: 225 PDNASYNTILDVLWLCRSGKTDQSIDKLNELLESGLVPHQITYNTIIHGYCREGQVEKAF 284
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+F K V+KS+ P+ +L+ L EG D A+ +G A Y + L
Sbjct: 285 QFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGL 344
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS-GNIQNAAYIFNQM--KNFCSP 228
C G+ EEA + ++ + P +Y ++ A D+ G ++ A N+M K+F P
Sbjct: 345 CKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKMVEKSF-KP 403
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
+L TCNI+++ G+ + A+KLF + KG I D T+NT++
Sbjct: 404 DLFTCNILLRGLCTEGMLDNALKLFN-----------TWISKGKAI-DAVTYNTIISGLC 451
Query: 289 AEKRWDD-LELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
E R+++ +L+ + +GL + + +IL R G+VE
Sbjct: 452 KEGRFEEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVE 493
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 106/243 (43%), Gaps = 35/243 (14%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+P+++ N ++NA VR KPS + ++ G N +
Sbjct: 166 LKPNLLTRNTLINALVRYPS----------------KPSVCLSKAIFTNVIKFGVKNKLS 209
Query: 113 EFFRKVQK----SYIPNALAYKVLVNTLW--REGKTDEAVSAVEDMERRGIVGSAALYYD 166
E + K S P+ +Y +++ LW R GKTD+++ + ++ G+V Y
Sbjct: 210 EAIGLIGKMKDFSCFPDNASYNTILDVLWLCRSGKTDQSIDKLNELLESGLVPHQITYNT 269
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNF 225
+ C G+ E+A +K+ + + KP + + L++ G + NA +FN +
Sbjct: 270 IIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKG 329
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
+ + VT N ++ + G FEEA L EM E K G PD YT+N +L
Sbjct: 330 KAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEE---------KKLG---PDCYTYNAILC 377
Query: 286 ACA 288
A A
Sbjct: 378 ALA 380
>gi|125558386|gb|EAZ03922.1| hypothetical protein OsI_26055 [Oryza sativa Indica Group]
Length = 658
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 138/308 (44%), Gaps = 31/308 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P + Y + L AG + +V D+M + + ++ PD+V YN ++
Sbjct: 220 PSRLIYNCLLDGLVNAGLLDTAVNVFDAMST--------------EDQVRPDVVSYNILI 265
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
R + A L ++++Q + P TY +M+ + G + + F+++++ +
Sbjct: 266 KGYCRAGRAHDAMARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGM 325
Query: 124 PNAL---AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
N + AY +++ L ++GK E ++ E M +RG +AA+Y L + G+ +EA
Sbjct: 326 GNDIPQHAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEA 385
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKA 239
+ +++ K V+Y ++ G + A F + + N + ++
Sbjct: 386 MALFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDG 445
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ + G+ +++ +LF+EM KG V PD Y +N ++D A R DD +
Sbjct: 446 FGKAGMVDQSKELFEEMI-----------AKGFV-PDSYCYNVLIDGLAKSGRMDDACAL 493
Query: 300 YKRMLHHG 307
YKRM G
Sbjct: 494 YKRMEDDG 501
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 2/237 (0%)
Query: 29 VIDSMRSLPKKKFKTGTLERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG 87
+IDSM ++K ER D L+ D V Y ++N R + + A + +++G
Sbjct: 372 LIDSMGKFGREKEAMALFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKG 431
Query: 88 QKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAV 146
+A Y +++ G + E F + + K ++P++ Y VL++ L + G+ D+A
Sbjct: 432 IAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDAC 491
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
+ + ME G + Y L L K EEAL D + P ++ L
Sbjct: 492 ALYKRMEDDGCDQTVYTYTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGL 551
Query: 207 LDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
SG A I +++ M+ + G F++A KL + + I
Sbjct: 552 CLSGKFSRACRILDELAPMGVIPETAHEDMINVLCKAGRFKQACKLADGIVQKGREI 608
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 4/202 (1%)
Query: 60 YNAVLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
Y V+ A C K +EG V +++ ++G +A Y +++ M G+ F ++
Sbjct: 334 YVLVIGALCKDGKPFEG-MAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFERM 392
Query: 119 QKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+ S + +++ Y V+VN L R GK DEAV+ + +GI +A Y L AG
Sbjct: 393 KDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMV 452
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIM 236
+++ +++ P Y LI SG + +A ++ +M+ + C + T I+
Sbjct: 453 DQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTIL 512
Query: 237 VKAYLEHGLFEEAMKLFQEMAE 258
+ + EEA+K + M +
Sbjct: 513 IDGLFKEHKNEEALKFWDAMID 534
>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
Length = 688
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/362 (23%), Positives = 146/362 (40%), Gaps = 44/362 (12%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M PD + Y S+ +AG++KE + +R + G L P ++ Y
Sbjct: 339 MGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLR-------RAG--------LAPTVLTY 383
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQ 119
N ++ R E A + +++ +QG P+ TY ++M+ L + EFF + +
Sbjct: 384 NIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAMAREFFDEMLS 443
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K P+ AY + G A+ E + GI Y L LC G ++
Sbjct: 444 KGLQPDCFAYNTRICAELILGDIARALELREVLMLEGISSDTVTYNILIHGLCKTGNLKD 503
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A K+ +P ++YT LI A + G ++ A IFN M + P+ VT +++
Sbjct: 504 AKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIH 563
Query: 239 AYLEHGLFEEAMKLFQEMAED------------------------SNHINREYDKKGLVI 274
AY G A F++M E+ ++H E ++GLV
Sbjct: 564 AYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLV- 622
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI--LDASRAGKVELLE 332
+ YT+ ++D W+D Y M +G+H + H ++ D +E L+
Sbjct: 623 ANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALVKGFDGHVHHTIEYLD 682
Query: 333 IT 334
I
Sbjct: 683 IV 684
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 145/342 (42%), Gaps = 62/342 (18%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+ N VL A +W+ V +++ Q G +PS TY +++ L G+ + V
Sbjct: 167 PDVKDCNHVLRALRDAARWDDICAVHEEMLQLGIEPSIVTYNTLLDSFLKEGRKDKVAML 226
Query: 115 FRKVQ---KSYIPNALAYKVLVNTLWREGKTDEAVSAVE--------------------- 150
++++ +PN + Y V++ L R+G +EA VE
Sbjct: 227 LKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKASSFTYNPLITGLL 286
Query: 151 -------------DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV 197
+ME GI+ + Y + L +G E A ++ ++ + P V+
Sbjct: 287 ARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVI 346
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+Y L+ +GN++ A +F ++ +P ++T NI + Y G EEA L +EM
Sbjct: 347 TYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEM 406
Query: 257 AEDSNHINREYDKKGLVIPDIYTFNTM----LDACA---AEKRWDDLELVYKRMLHHGLH 309
E +P++ T+ + L+ C+ A + +D E++ K +
Sbjct: 407 GEQG------------CLPNVCTYTILMKGSLNVCSLAMAREFFD--EMLSKGLQPDCFA 452
Query: 310 FNAKRHLRMIL-DASRAGKVELLEITWEHLARADRITPPALI 350
+N + +IL D +RA +EL E+ +D +T LI
Sbjct: 453 YNTRICAELILGDIARA--LELREVLMLEGISSDTVTYNILI 492
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 146/382 (38%), Gaps = 68/382 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------SLPKKKFKTGTLER------WDPR 52
P+ V Y + L + G ++E ++++ MR S TG L R +D +
Sbjct: 239 PNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKASSFTYNPLITGLLARGCVKKVYDLQ 298
Query: 53 LE-------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
LE P +V YNA+++ ++ E A +++ G P TY ++
Sbjct: 299 LEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKA 358
Query: 106 GKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G F ++++ + P L Y + ++ R G +EA E+M +G + + Y
Sbjct: 359 GNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTY 418
Query: 165 YDLARC---LCSAGKCEEALMQM-------------DKIC------KVAN---------- 192
L + +CS E +M +IC +A
Sbjct: 419 TILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVLML 478
Query: 193 ---KPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEE 248
V+Y LI +GN+++A + +M N P+ +T ++ A+ E GL E
Sbjct: 479 EGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLRE 538
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
A K+F M D ++P TF ++ A +++ML G+
Sbjct: 539 ARKIFNNMISDG------------LLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGV 586
Query: 309 HFNAKRHLRMILDASRAGKVEL 330
N + +I R G+ +L
Sbjct: 587 EPNEITYNVLIHALCRMGRTQL 608
>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 632
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 142/305 (46%), Gaps = 35/305 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM----------------RSLPKKKFKTGTLER 48
PDTV ++ LG+AG + + + + M ++L + K + +
Sbjct: 333 PDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFS 392
Query: 49 WDPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
W R++ P Y+ +++ + + E A +L+++ ++G P Y +++ +
Sbjct: 393 WFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALG 452
Query: 104 ACGKYNLVYEFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+Y+L E F++++++ +A Y V++ L + G+ D+A++ ++M + G +
Sbjct: 453 KAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVY 512
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y L L A +EAL M K+ + P + SY ++ +G A + M
Sbjct: 513 AYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNM 572
Query: 223 KN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
KN P+ V+ N ++ A G+FEEA +L +EM N + EY D+ T++
Sbjct: 573 KNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEM----NALGFEY--------DLITYS 620
Query: 282 TMLDA 286
++L+A
Sbjct: 621 SILEA 625
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/328 (21%), Positives = 149/328 (45%), Gaps = 29/328 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P AY S+ + L G +++ ++ + M + + PD V Y+A++
Sbjct: 192 PTAQAYNSMIIMLIHEGQYEKVHELYNEMSN--------------EGHCHPDTVTYSALI 237
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+A + + + A +L ++K+ G +P+A Y +++ + + F +++ Y
Sbjct: 238 SAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCR 297
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y L+ L + G+ DEA +M+R + ++ L AG+ ++ L
Sbjct: 298 PDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKL 357
Query: 184 MDKICKVANKPLVVSYTGLIQACLDS-GNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYL 241
+++ P VV+Y +I+A +S + F +MK + SP+ T +I++ +
Sbjct: 358 FEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFC 417
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ E+AM L +EM D+KG P + +++DA KR+D +++
Sbjct: 418 KTNRIEKAMMLLEEM-----------DEKGFP-PCPAAYCSLIDALGKAKRYDLACELFQ 465
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + +A+ + MI +AG+++
Sbjct: 466 ELKENCGSSSARVYAVMIKHLGKAGRLD 493
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 114/237 (48%), Gaps = 16/237 (6%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV--QKSYIPNALAYKVLV 133
A + Q+K + +P+A Y ++ +++ G+Y V+E + ++ + P+ + Y L+
Sbjct: 178 AITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALI 237
Query: 134 NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANK 193
+ + G+ D A+ + +M+ G+ +A +Y + AL +++ + +
Sbjct: 238 SAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCR 297
Query: 194 PLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKL 252
P V +YT LI+ +G I A + +++M + C P+ V N M+ + G ++ +KL
Sbjct: 298 PDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKL 357
Query: 253 FQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK-RWDDLELVYKRMLHHGL 308
F+EM IP++ T+NT++ A K R ++ ++RM G+
Sbjct: 358 FEEMGVSH------------CIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGI 402
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/327 (20%), Positives = 134/327 (40%), Gaps = 35/327 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKKFKT-------------GTLE 47
+PDTV Y ++ + G +++ M+ P K T G L
Sbjct: 227 HPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALS 286
Query: 48 RWDPR----LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
++ PD+ Y ++ + + + A+ +++++ KP ++ +
Sbjct: 287 LFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLG 346
Query: 104 ACGKYNLVYEFFRKVQKSY-IPNALAYKVLVNTLWR-EGKTDEAVSAVEDMERRGIVGSA 161
G+ + + F ++ S+ IPN + Y ++ L+ + + E S E M+ GI S
Sbjct: 347 KAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSP 406
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L C + E+A+M ++++ + P +Y LI A + A +F +
Sbjct: 407 FTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQE 466
Query: 222 MKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
+K C S + +M+K + G ++A+ LF EM+ K G P++Y +
Sbjct: 467 LKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMS-----------KLGCT-PNVYAY 514
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHG 307
N ++ A D+ ++M HG
Sbjct: 515 NALMSGLARACMLDEALTTMRKMQEHG 541
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/334 (20%), Positives = 135/334 (40%), Gaps = 35/334 (10%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKT---------GTLERWDP 51
M PD Y + LG+AG I E + M+ K G R D
Sbjct: 294 MYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDD 353
Query: 52 RLE-----------PDIVVYNAVLNACVRRK-QWEGAFWVLQQLKQQGQKPSATTYGLVM 99
L+ P++V YN ++ A K + F +++K G PS TY +++
Sbjct: 354 GLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILI 413
Query: 100 EVMLACGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ + ++ +K + P AY L++ L + + D A ++++
Sbjct: 414 DGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGS 473
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
SA +Y + + L AG+ ++A+ D++ K+ P V +Y L+ + + A
Sbjct: 474 SSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTT 533
Query: 219 FNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI 277
+M+ C P++ + NI++ + G AM++ M K + PD
Sbjct: 534 MRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNM------------KNSTIKPDA 581
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
++NT+L A + +++ + K M G ++
Sbjct: 582 VSYNTVLSALSHAGMFEEAAELMKEMNALGFEYD 615
>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
Length = 745
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 129/321 (40%), Gaps = 34/321 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM---RSLPKKKFKTGTL------------ERW 49
P+ Y S+ L G I + V++ M + + + T L RW
Sbjct: 324 PNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRW 383
Query: 50 DPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
++ D V Y ++N R + E A +LQ++ + TY ++++
Sbjct: 384 FDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCK 443
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK ++ VQ+ PN + Y L + L ++G A + +M +G+ +A
Sbjct: 444 RGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACT 503
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y L LC AG E+A+ M + KP V +YT LI A SG++ A + +M
Sbjct: 504 YNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEML 563
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
P +VT N+++ + G E KL M E + H P+ T+N+
Sbjct: 564 DKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIH------------PNAATYNS 611
Query: 283 MLDACAAEKRWDDLELVYKRM 303
++ E +YK M
Sbjct: 612 LMKQYCIENNMKSTTEIYKGM 632
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/342 (21%), Positives = 130/342 (38%), Gaps = 67/342 (19%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+ + +Y + L AG +K+ + D M S PD+V Y +
Sbjct: 256 HKNVCSYNILLKALCDAGRVKDARQLFDEMAS------------------APDVVTYGIL 297
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA------------------- 104
++ + E A +L ++ G +P+AT Y V+ ++
Sbjct: 298 IHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKV 357
Query: 105 --------------CGKYNLV--YEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVS 147
C K +LV +F ++Q K + + Y ++N L R + +EA
Sbjct: 358 ILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEK 417
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
+++M R + Y L C GK EA + + + P VV+YT L
Sbjct: 418 LLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLC 477
Query: 208 DSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
G++Q A + ++M N N T N ++ + G E+AM+ +M
Sbjct: 478 KQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADM---------- 527
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+ PD+YT+ T++DA D + + ML G+
Sbjct: 528 --DTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGI 567
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 99/249 (39%), Gaps = 37/249 (14%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E W RL+ D V Y +++ +R + AF + + Q+G P+ TY + + + G
Sbjct: 421 EMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQG 480
Query: 107 KYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
E ++ K NA Y L+N L + G ++A+ + DM+ + Y
Sbjct: 481 DVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYT 540
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQ------------ 213
L LC +G + A + ++ KP +V+Y L+ SG ++
Sbjct: 541 TLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEK 600
Query: 214 ----NAAYIFNQMKNFC--------------------SPNLVTCNIMVKAYLEHGLFEEA 249
NAA + MK +C PN T NI++K + + +EA
Sbjct: 601 NIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCKARNMKEA 660
Query: 250 MKLFQEMAE 258
+ EM +
Sbjct: 661 LYFHDEMIQ 669
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 1/172 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD+ Y +++A + + A +LQ++ +G KP+ TY ++M G+
Sbjct: 532 LKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGK 591
Query: 113 EFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ ++K+ PNA Y L+ E + M R + + Y L +
Sbjct: 592 KLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYNILIKGH 651
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
C A +EAL D++ + + SY+ LI+ A +F+ M+
Sbjct: 652 CKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELFHDMR 703
>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 443
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 141/313 (45%), Gaps = 23/313 (7%)
Query: 27 FDVIDSMRSLPKKKFKTGTLERWDPRLE--------PDIVVYNAVLNACVRRKQWEGAFW 78
F+ I+S +L K + G LE LE PDI+ +++ + + A
Sbjct: 82 FEEIESNNNL-SKLVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATR 140
Query: 79 VLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLW 137
+++ ++ G P TY +++ M + G++ + V++ P+ + + +L+N L
Sbjct: 141 IMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLC 200
Query: 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV 197
R+G A+ +E M + G ++ Y L C K E A+ + K+ P +V
Sbjct: 201 RKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIV 260
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+Y L+ A G + A + NQ+ + CSP L+T N ++ + G ++A KL EM
Sbjct: 261 TYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEM 320
Query: 257 AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316
KGL PDI T+++++ + E + D+ + + G+ NA +
Sbjct: 321 RA-----------KGLK-PDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYN 368
Query: 317 RMILDASRAGKVE 329
++L +A K +
Sbjct: 369 AIMLGLCKARKTD 381
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 1/169 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDIV YN +L A + + + A +L QL +G P TY V++ + GK + +
Sbjct: 257 PDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKL 316
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++ K P+ + Y LV L REGK DEA+ D+E G+ +A Y + LC
Sbjct: 317 LDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCK 376
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
A K + A+ + + + KP SYT LI+ G + A + N++
Sbjct: 377 ARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNEL 425
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 86/186 (46%), Gaps = 16/186 (8%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD V Y ++ L + G + ++++ + S P ++ YN V
Sbjct: 256 YPDIVTYNTLLTALCKDGKVDAAVELLNQLSS---------------KGCSPVLITYNTV 300
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
++ + + + A +L +++ +G KP TY ++ + GK + +FF ++ +
Sbjct: 301 IDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGV 360
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PNA+ Y ++ L + KTD A+ + M +RG + A Y L L G +EAL
Sbjct: 361 KPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALE 420
Query: 183 QMDKIC 188
++++C
Sbjct: 421 LLNELC 426
>gi|255661018|gb|ACU25678.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 376
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 135/283 (47%), Gaps = 15/283 (5%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ + PD VVYNA+LN + + + F + + + ++G + A ++ ++M + GK N
Sbjct: 18 ESEVSPDAVVYNAMLNGFFKVGRIKDCFELWELMGKEGGRNVA-SFNIMMRGLFDNGKVN 76
Query: 110 LVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
V + ++KS ++ +++ Y +LV+ L + G ++++ +E E +G V A Y +
Sbjct: 77 EVISIWELMKKSGFVEDSITYGILVHGLCKNGDINKSLHMLEIAEVKGGVLDAFAYSAMI 136
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCS 227
LC K ++A+ ++ + K P Y LI + + ++A +F +M N CS
Sbjct: 137 NWLCKDSKLDKAVSVLNGMIKXGCMPNAHVYNALINGLVGASKFEDAIRVFQEMGNTHCS 196
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P ++T N ++ + F EA L +EM E + P + T++ ++
Sbjct: 197 PTIITYNTLINGLCKAERFGEAYDLVKEMLEKGWN------------PCVITYSLLIKGL 244
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
++ + ++ ++++ G + + H +I GK +L
Sbjct: 245 CLGRKVEMALHLWNQVINKGFKPDVQMHNILIHGLCSVGKTQL 287
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 117/268 (43%), Gaps = 17/268 (6%)
Query: 74 EGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLV 133
+ A V +++ + P A Y ++ G+ +E + + K N ++ +++
Sbjct: 7 DAAKMVYKEIVESEVSPDAVVYNAMLNGFFKVGRIKDCFELWELMGKEGGRNVASFNIMM 66
Query: 134 NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANK 193
L+ GK +E +S E M++ G V + Y L LC G ++L M +I +V
Sbjct: 67 RGLFDNGKVNEVISIWELMKKSGFVEDSITYGILVHGLCKNGDINKSL-HMLEIAEVKGG 125
Query: 194 PL-VVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMK 251
L +Y+ +I + A + N M K C PN N ++ + FE+A++
Sbjct: 126 VLDAFAYSAMINWLCKDSKLDKAVSVLNGMIKXGCMPNAHVYNALINGLVGASKFEDAIR 185
Query: 252 LFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKRMLHHGLHF 310
+FQEM + H + P I T+NT+++ C AE+ + +LV K ML G +
Sbjct: 186 VFQEMG--NTHCS----------PTIITYNTLINGLCKAERFGEAYDLV-KEMLEKGWNP 232
Query: 311 NAKRHLRMILDASRAGKVELLEITWEHL 338
+ +I KVE+ W +
Sbjct: 233 CVITYSLLIKGLCLGRKVEMALHLWNQV 260
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/299 (19%), Positives = 124/299 (41%), Gaps = 31/299 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ + G IK+ F++ + M + ++ +N ++
Sbjct: 23 PDAVVYNAMLNGFFKVGRIKDCFELWELMGKEGGR----------------NVASFNIMM 66
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ + + +K+ G + TYG+++ + G N + K +
Sbjct: 67 RGLFDNGKVNEVISIWELMKKSGFVEDSITYGILVHGLCKNGDINKSLHMLEIAEVKGGV 126
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+A AY ++N L ++ K D+AVS + M + G + +A +Y L L A K E+A+
Sbjct: 127 LDAFAYSAMINWLCKDSKLDKAVSVLNGMIKXGCMPNAHVYNALINGLVGASKFEDAIRV 186
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ P +++Y LI + A + +M + +P ++T ++++K
Sbjct: 187 FQEMGNTHCSPTIITYNTLINGLCKAERFGEAYDLVKEMLEKGWNPCVITYSLLIKGLCL 246
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVY 300
E A+ L+ ++ IN+ + PD+ N ++ C+ K L L +
Sbjct: 247 GRKVEMALHLWNQV------INKGFK------PDVQMHNILIHGLCSVGKTQLALSLYF 293
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 83/188 (44%), Gaps = 2/188 (1%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + P I+ YN ++N + +++ A+ +++++ ++G P TY L+++ +
Sbjct: 189 EMGNTHCSPTIITYNTLINGLCKAERFGEAYDLVKEMLEKGWNPCVITYSLLIKGLCLGR 248
Query: 107 KYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K + + +V K + P+ + +L++ L GKT A+S DM R + +
Sbjct: 249 KVEMALHLWNQVINKGFKPDVQMHNILIHGLCSVGKTQLALSLYFDMNRWNCAPNLVTHN 308
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA-YIFNQMKN 224
L G AL +I + +P ++SY ++ I A ++ + +
Sbjct: 309 TLMZGFYKDGDIRNALATWARILRNGVQPDIISYNITLKGLCSCNRISGAILFLHDALTK 368
Query: 225 FCSPNLVT 232
P ++T
Sbjct: 369 KIFPTIIT 376
>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
Length = 1351
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 143/332 (43%), Gaps = 30/332 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + +G++ I+E+ V + M +K + E V YN ++
Sbjct: 867 PDEFTYNLLLDAMGKSMRIEEMLKVQEEMH---RKGY------------ESTYVTYNTII 911
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ V+ ++ E A + L QG P+ TYG +++ +L G+ F + ++
Sbjct: 912 SGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCK 971
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N Y +L+N G T++ +DM +GI Y + LC AG+ + L
Sbjct: 972 ANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTY 1031
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ ++ +P +++Y LI S ++ A +FN+M K PNL T N ++ +
Sbjct: 1032 FRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGK 1091
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G EA K+++E+ KG P+++T+N ++ + D Y R
Sbjct: 1092 AGKAAEAGKMYEELL-----------TKGWK-PNVFTYNALIRGYSVSGSTDSAYAAYGR 1139
Query: 303 MLHHGLHFNAKR-HLRMILDASRAGKVELLEI 333
M+ G N+ H+ ++ G + EI
Sbjct: 1140 MIVGGCLPNSSTCHIHELMKTFLKGDSDSYEI 1171
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 148/350 (42%), Gaps = 36/350 (10%)
Query: 18 GQAGHIKELFDVIDSMRSLPKKKFKT-----------GTLERWDPRL----EPDIVV--- 59
G+ G + E+FDV+ R + K T G L L E IV+
Sbjct: 183 GRVGDMAEVFDVMQ--RQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAY 240
Query: 60 -YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
YN ++ V+ A V + + G PS TY ++M V R++
Sbjct: 241 TYNGLVYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREM 300
Query: 119 QKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+ + PN +Y + + L + + DEA + +ME G + L + LC AG+
Sbjct: 301 EAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRI 360
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIM 236
+A K+ K KP V+Y L+ D+G Q+ I+N MK + + N+V +
Sbjct: 361 SDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAV 420
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ A + G EA+++F EM + KG+V P+ Y++N+++ R+ D
Sbjct: 421 IDALCQVGRVFEALEMFDEMKQ-----------KGIV-PEQYSYNSLISGFLKADRFGDA 468
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
++K M HG N H+ I ++G+ + I L ++ I P
Sbjct: 469 LELFKYMDIHGPKPNGYTHVLFINYYGKSGE-SIKAIQRYELMKSKGIVP 517
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/383 (19%), Positives = 154/383 (40%), Gaps = 66/383 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ +Y LGQA E + ++ M + +PD++ + ++
Sbjct: 307 PNVYSYTICIRVLGQARRFDEAYRILAEME---------------NEGCKPDVITHTVLI 351
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ A V ++K+ QKP TY +++ G+ V E + ++ Y
Sbjct: 352 QVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYN 411
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA--------- 174
N +AY +++ L + G+ EA+ ++M+++GIV Y L A
Sbjct: 412 DNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALEL 471
Query: 175 -----------------------GKCEEALMQMDKICKVANK---PLVVSYTGLIQACLD 208
GK E++ + + + +K P VV+ ++
Sbjct: 472 FKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAK 531
Query: 209 SGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
SG + A +F+++K SP+ +T +M+K + F+EA+K+F +M E++
Sbjct: 532 SGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENN------- 584
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
+PD+ N+++D R D+ ++ ++ L + ++ R GK
Sbjct: 585 -----CVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGK 639
Query: 328 VELLEITWEHLARADRITPPALI 350
V+ + E + ++ PP LI
Sbjct: 640 VKEVMHLLEEMYHSN--YPPNLI 660
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/252 (19%), Positives = 106/252 (42%), Gaps = 16/252 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD VA ++ L ++G + V ++++ + PD + Y ++
Sbjct: 517 PDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMG---------------VSPDTITYTMMI 561
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
C + +++ A + + + P +++ + G+ + ++ F ++++ +
Sbjct: 562 KCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLE 621
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P Y L+ L REGK E + +E+M + Y + CLC G +AL
Sbjct: 622 PTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDM 681
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
+ + P + SY +I + A IF QMK P+ T ++ ++++
Sbjct: 682 LYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKI 741
Query: 244 GLFEEAMKLFQE 255
GL +EA+ + +E
Sbjct: 742 GLMKEALHIIKE 753
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 122/279 (43%), Gaps = 14/279 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P++ Y + + ++++ A+ +L +++ +G KP T+ ++++V+ G+ +
Sbjct: 305 VKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAK 364
Query: 113 EFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F K++KS P+ + Y L++ G++ + M+ G + Y + L
Sbjct: 365 DVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDAL 424
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C G+ EAL D++ + P SY LI L + +A +F M + PN
Sbjct: 425 CQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNG 484
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T + + Y + G E++K Q E K ++PD+ N +L A
Sbjct: 485 YTHVLFINYYGKSG---ESIKAIQRY---------ELMKSKGIVPDVVAGNAVLFGLAKS 532
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
R + V+ + G+ + + MI S+A K +
Sbjct: 533 GRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFD 571
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/291 (21%), Positives = 124/291 (42%), Gaps = 30/291 (10%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
YN+++ V + A + ++K+ G P TY L+++ M GK + E KVQ
Sbjct: 837 YNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAM---GKSMRIEEML-KVQ 892
Query: 120 -----KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
K Y + Y +++ L + + ++A+ ++ +G + Y L L A
Sbjct: 893 EEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKA 952
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTC 233
G+ E+A +++ + K Y L+ +GN + ++F M +P++ +
Sbjct: 953 GRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSY 1012
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
I++ + G + + F+++ E GL PD+ T+N ++D KR
Sbjct: 1013 TIIIDTLCKAGQLNDGLTYFRQLLE-----------MGLE-PDLITYNLLIDGLGKSKRL 1060
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV--------ELLEITWE 336
++ ++ M G+ N + +IL +AGK ELL W+
Sbjct: 1061 EEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWK 1111
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 80/390 (20%), Positives = 149/390 (38%), Gaps = 77/390 (19%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M+ P Y ++ LG+ G +KE+ +++ M + P+++ Y
Sbjct: 618 MNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEM---------------YHSNYPPNLITY 662
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N +L+ + A +L + +G P ++Y V+ ++ +YN + F +++K
Sbjct: 663 NTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKK 722
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVED----------------------------- 151
IP+ ++ + + G EA+ +++
Sbjct: 723 VLIPDYATLCTILPSFVKIGLMKEALHIIKEYFLQPGSKTDRSSCHSLMEGILKKAGTEK 782
Query: 152 -MERRGIVGSAALYYD------LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204
+E I+ S+ + D L + LC K EA + K SY LI
Sbjct: 783 SIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGSYNSLIC 842
Query: 205 ACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM---AEDS 260
+D I A +F +MK C P+ T N+++ A + EE +K+ +EM +S
Sbjct: 843 GLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYES 902
Query: 261 NHINREYDKKGLVIP-------DIY-------------TFNTMLDACAAEKRWDDLELVY 300
++ GLV D+Y T+ +LD R +D E ++
Sbjct: 903 TYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLF 962
Query: 301 KRMLHHGLHFNAKRHLRMILDASR-AGKVE 329
ML +G N + ++L+ R AG E
Sbjct: 963 NEMLEYGCKANCTIY-NILLNGHRIAGNTE 991
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 105/250 (42%), Gaps = 47/250 (18%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN-LVYE 113
PD+V NAVL + + A V +LK G P TY ++++ K++ V
Sbjct: 517 PDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKI 576
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F+ ++ + +P+ L L++TL++ G+ DEA ++ + + Y L L
Sbjct: 577 FYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGR 636
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTC 233
GK +E + ++++ +N P PNL+T
Sbjct: 637 EGKVKEVMHLLEEMYH-SNYP---------------------------------PNLITY 662
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N ++ ++G +A+ + M KG IPD+ ++NT++ E+R+
Sbjct: 663 NTILDCLCKNGAVNDALDMLYSMT-----------TKG-CIPDLSSYNTVIYGLVKEERY 710
Query: 294 DDLELVYKRM 303
++ ++ +M
Sbjct: 711 NEAFSIFCQM 720
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 65/325 (20%), Positives = 125/325 (38%), Gaps = 59/325 (18%)
Query: 71 KQWEGAFWVLQQLKQQGQKP----SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PN 125
+ +G L++ + ++P + + ++++M G+ + E F +Q+ + N
Sbjct: 144 RSADGPAEALERFRSAARRPRVVHTTASCNYMLDLMRDHGRVGDMAEVFDVMQRQIVKAN 203
Query: 126 ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL---- 181
+ + L EG A A+ M+ GIV +A Y L L +G EAL
Sbjct: 204 VGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYK 263
Query: 182 -MQMDKICKVAN------------------------------KPLVVSYTGLIQACLDSG 210
M +D + KP V SYT I+ +
Sbjct: 264 VMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAR 323
Query: 211 NIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
A I +M+N C P+++T ++++ + G +A +F +M ++ D+
Sbjct: 324 RFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKM--------KKSDQ 375
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
K PD T+ T+LD A + ++ M G + N + +I + G+V
Sbjct: 376 K----PDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRV- 430
Query: 330 LLEITWEHLARADRITPPALIKERF 354
+E L D + ++ E++
Sbjct: 431 -----FEALEMFDEMKQKGIVPEQY 450
>gi|125582060|gb|EAZ22991.1| hypothetical protein OsJ_06687 [Oryza sativa Japonica Group]
Length = 466
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/358 (21%), Positives = 156/358 (43%), Gaps = 52/358 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ + GH+ + D++++M +P+ V YNA L
Sbjct: 75 PDVVIYSTLINGFSEQGHVDQALDLLNTMLC------------------KPNTVCYNAAL 116
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
++WE ++ ++ ++G P+ T+ +++ + + E +++K
Sbjct: 117 KGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCE 176
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD-LARCLCSAGK---CEE 179
P+ + Y +++N+L G+ D+A+ + M + AL ++ + + C A + E
Sbjct: 177 PDTVNYNIIINSLSERGRVDDALRLLNSM----VCKPDALGFNAVLKGFCRAERWHDASE 232
Query: 180 ALMQMDKICKVANKPLV-VSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
+ QM + + PL+ +++ LI +G + A +F QM + C+P++VT + ++
Sbjct: 233 LIAQMFR----DDCPLIEMTFNILIDMLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLL 288
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ E GL E A++LF+ M PDI+++N +L RW+D
Sbjct: 289 NGFSEQGLVEVAIQLFRSMP---------------CKPDIFSYNAVLKGLCRAARWEDAG 333
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAG----KVELLEITWEHLARADRITPPALIK 351
+ M+ N +I + G +E+LE + + D T ALI
Sbjct: 334 ELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALIN 391
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/329 (22%), Positives = 139/329 (42%), Gaps = 46/329 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV Y I +L + G + + +++SM +PD + +NAVL
Sbjct: 177 PDTVNYNIIINSLSERGRVDDALRLLNSMVC------------------KPDALGFNAVL 218
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
R ++W A ++ Q+ + T+ ++++++ G N + F ++ +
Sbjct: 219 KGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDMLCQNGLVNYATQVFEQMPRYRCT 278
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L+N +G + A+ M + + S Y + + LC A + E+A
Sbjct: 279 PDIVTYSSLLNGFSEQGLVEVAIQLFRSMPCKPDIFS---YNAVLKGLCRAARWEDAGEL 335
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLE 242
+ ++ P V++ LI + G + A + QM N+ S P++ T N ++ + E
Sbjct: 336 IAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSE 395
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G ++A+KL M+ PD ++N+ L +RW D E +
Sbjct: 396 QGRLDDALKLLSTMS---------------CKPDAISYNSTLKGLCRAERWQDAEELVAE 440
Query: 303 MLHHG-----LHFNAKRHLRMILDASRAG 326
ML + + F HL M +RAG
Sbjct: 441 MLRNKCTPNEVTFKYANHLLM---PNRAG 466
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/339 (21%), Positives = 133/339 (39%), Gaps = 27/339 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD YN VL K+WE A ++ ++ + P+ T+ + G + +
Sbjct: 5 PDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQL 64
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA-RCLC 172
++ + P+ + Y L+N +G D+A+ + M + + Y+ A + LC
Sbjct: 65 LDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTM----LCKPNTVCYNAALKGLC 120
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLV 231
A + E+ M ++ + P +++ LI + + + +A + QM+ + C P+ V
Sbjct: 121 IAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTV 180
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
NI++ + E G ++A++L M + PD FN +L +
Sbjct: 181 NYNIIINSLSERGRVDDALRLLNSM---------------VCKPDALGFNAVLKGFCRAE 225
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIK 351
RW D + +M +I + G V +E + R R TP +
Sbjct: 226 RWHDASELIAQMFRDDCPLIEMTFNILIDMLCQNGLVNYATQVFEQMPRY-RCTPDIVTY 284
Query: 352 ERFCNRLENKDYGS-AISCLVSHPVSGSPE-FSRNAWLK 388
N + AI S P P+ FS NA LK
Sbjct: 285 SSLLNGFSEQGLVEVAIQLFRSMPC--KPDIFSYNAVLK 321
>gi|299469655|emb|CBN76509.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 787
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 141/330 (42%), Gaps = 30/330 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V+Y GQ+ K +++ R +P++ + PD V YN +
Sbjct: 457 PTVVSYSHAIAACGQSYQWKPALELL---REMPQEAG-----------INPDAVCYNNCM 502
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK--SY 122
A R QWE A +L+++ G A +Y + ++ G+ R++Q S
Sbjct: 503 TALGRGLQWEMALTLLREMPSVGLPIKAQSYTVAIKACGDAGEGKPAVALLREMQAELSV 562
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN ++Y + + + +A+ + +M G+ + Y ++GK EEAL
Sbjct: 563 PPNVISYTAAIAACGKGDQWKQALELLREMASMGVSPNDRTYTAAITACGNSGKWEEALS 622
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYL 241
+ ++ + P + SYT I+AC + G + A +F ++ + + ++ N V+A
Sbjct: 623 LLREMPTMGADPNIASYTATIKACGNGGQWERAVELFRELPSAGITADVQAYNACVQACG 682
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK--RWDDLELV 299
G ++A++L +EMA + + P+++T+N L AC+ RW +
Sbjct: 683 NSGAVDQAVELLREMAPAAG-----------LEPNVFTYNAALMACSCPDGGRWGKALEL 731
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ M G+ NA H + G+ E
Sbjct: 732 LEEMAWRGIAPNAVTHESALAACGERGRDE 761
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/323 (21%), Positives = 141/323 (43%), Gaps = 34/323 (10%)
Query: 14 AVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQW 73
AVT+ G + ++ +R + K +EP ++ Y+A + AC KQW
Sbjct: 393 AVTIKACGRGRRWARALELLREMEKNG------------VEPIVMGYDACIAACGDGKQW 440
Query: 74 EGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK---YNLVYEFFRKV-QKSYI-PNALA 128
E A +L+++ G P+ +Y + ACG+ + E R++ Q++ I P+A+
Sbjct: 441 EQAVALLREMPTVGVTPTVVSYS---HAIAACGQSYQWKPALELLREMPQEAGINPDAVC 497
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI- 187
Y + L R + + A++ + +M G+ A Y + AG+ + A+ + ++
Sbjct: 498 YNNCMTALGRGLQWEMALTLLREMPSVGLPIKAQSYTVAIKACGDAGEGKPAVALLREMQ 557
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLF 246
+++ P V+SYT I AC + A + +M + SPN T + A G +
Sbjct: 558 AELSVPPNVISYTAAIAACGKGDQWKQALELLREMASMGVSPNDRTYTAAITACGNSGKW 617
Query: 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306
EEA+ L +EM P+I ++ + AC +W+ +++ +
Sbjct: 618 EEALSLLREMPTMGAD------------PNIASYTATIKACGNGGQWERAVELFRELPSA 665
Query: 307 GLHFNAKRHLRMILDASRAGKVE 329
G+ + + + + +G V+
Sbjct: 666 GITADVQAYNACVQACGNSGAVD 688
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/359 (19%), Positives = 136/359 (37%), Gaps = 63/359 (17%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
DTV ++ T G + + +V+ MR + L PD + Y +
Sbjct: 213 DTVMCNAVLNTFAADGRWQVVLEVMRQMR---------------EAGLTPDALTYTNAIK 257
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
AC + ++W + +L+++ G + ++ Y M G R++Q + I P
Sbjct: 258 ACGKGREWRRSVALLKEMSAHGVELNSIHYVCAMTACKISGMGAEAVGLLREMQAAGIEP 317
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGI--------------------------- 157
N + Y + G+++ AV +E+M G+
Sbjct: 318 NVICYNTAIAACGTGGQSEVAVDLLEEMNALGVRPNTQTCLAAVRAAGDRDRGEQAVSVL 377
Query: 158 -------VGSAALYYDLARCLCSAG-KCEEALMQMDKICKVANKPLVVSYTGLIQACLDS 209
V + A Y + C G + AL + ++ K +P+V+ Y I AC D
Sbjct: 378 RSMSEAGVAAEAKCYAVTIKACGRGRRWARALELLREMEKNGVEPIVMGYDACIAACGDG 437
Query: 210 GNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD 268
+ A + +M +P +V+ + + A + ++ A++L +EM +++ IN
Sbjct: 438 KQWEQAVALLREMPTVGVTPTVVSYSHAIAACGQSYQWKPALELLREMPQEAG-IN---- 492
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
PD +N + A +W+ + + M GL A+ + I AG+
Sbjct: 493 ------PDAVCYNNCMTALGRGLQWEMALTLLREMPSVGLPIKAQSYTVAIKACGDAGE 545
>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
Length = 564
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/337 (21%), Positives = 148/337 (43%), Gaps = 38/337 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD V Y ++ +L +AG ++E R L G + P++V Y+ +
Sbjct: 69 HPDVVTYNTLIDSLCKAGDLEE-------ARRLHGDMSSRGCV--------PNVVTYSVL 113
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQK--PSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
+N + + + A ++Q++ ++ P+ TY ++ + E R ++
Sbjct: 114 INGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDG 173
Query: 122 YI---PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ P+ + + L++ L + G+ DEA S +DM G V + Y L LC A K E
Sbjct: 174 SLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKME 233
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL-----VT 232
A ++ + P V++Y+ L+ A + + A + + M + C+PN+ VT
Sbjct: 234 RAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVT 293
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
NI++ + G FE+A LF+EM + + PD+ TF ++D +
Sbjct: 294 FNILIAGACKAGNFEQASALFEEMVAKN------------LQPDVMTFGALIDGLCKAGQ 341
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + M + G+ N + ++ ++G++E
Sbjct: 342 VEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIE 378
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 133/312 (42%), Gaps = 29/312 (9%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P IV YN ++N + + ++L ++G P TY +++ + G
Sbjct: 35 PTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRL 94
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG--IVGSAALYYDLARCL 171
+ + +PN + Y VL+N L + G+ DEA +++M R+ ++ + Y L
Sbjct: 95 HGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGL 154
Query: 172 CSAGKCEEA--LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSP 228
C EA LM+ + + P V+++ LI G I A +F+ M P
Sbjct: 155 CKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVP 214
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-C 287
N++T N +V + E A + + M + KG V PD+ T++ ++DA C
Sbjct: 215 NVITYNALVNGLCKADKMERAHAMIESMVD-----------KG-VTPDVITYSVLVDAFC 262
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLR-----MILDASRAGKVELLEITWEHLA--- 339
A + + LEL++ M G N + +I A +AG E +E +
Sbjct: 263 KASRVDEALELLHG-MASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKN 321
Query: 340 -RADRITPPALI 350
+ D +T ALI
Sbjct: 322 LQPDVMTFGALI 333
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 63/301 (20%), Positives = 120/301 (39%), Gaps = 26/301 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPR-LEPDIVVYNAV 63
PD + Y + +A + E +++ M S P L PD V +N +
Sbjct: 249 PDVITYSVLVDAFCKASRVDEALELLHGMAS-----------RGCTPNVLVPDKVTFNIL 297
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
+ + +E A + +++ + +P T+G +++ + G+ + + +
Sbjct: 298 IAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGV 357
Query: 124 P-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P N + Y LV+ L + G+ +EA +E+M G V + Y L LC A + ++AL
Sbjct: 358 PPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQ 417
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYL 241
+ ++ P V+Y L+ SG + A + +M P+ T
Sbjct: 418 LVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLH 477
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G M+L R KG+ +PD T +++LD + DD++ + K
Sbjct: 478 RSGNLAGTMELL-----------RVVLAKGM-LPDATTCSSILDWVCRSGKLDDVKAMIK 525
Query: 302 R 302
Sbjct: 526 E 526
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 66/150 (44%), Gaps = 16/150 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD++ Y S+ L +A + ++ ++S WDP D V YN ++
Sbjct: 394 PDSITYGSLVYALCRASRTDDALQLVSELKSFG-----------WDP----DTVTYNILV 438
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + + E A VL+++ +G +P + T+ + G E R V K +
Sbjct: 439 DGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGML 498
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDME 153
P+A +++ + R GK D+ + +++ E
Sbjct: 499 PDATTCSSILDWVCRSGKLDDVKAMIKEFE 528
>gi|222631078|gb|EEE63210.1| hypothetical protein OsJ_18020 [Oryza sativa Japonica Group]
Length = 975
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 38/280 (13%)
Query: 15 VTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERW-DPRLEPDIVVYNAVLNACVRRKQW 73
++LG G I D+I + ++ + + G + D L P YN++ RRK
Sbjct: 467 ISLGCKGKILMFNDLIHELCNMDRLEEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKDP 526
Query: 74 EGAFWVLQQLKQQGQKP-----------------------------------SATTYGLV 98
+ A +L++++ G P TY
Sbjct: 527 KAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIGFLPDIVTYSAA 586
Query: 99 MEVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
M M G+ + FR + K Y+P+ +A+ +L+N + K DEA +E+M +G+
Sbjct: 587 MNGMCNTGEVDDALHLFRDISCKYYLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGL 646
Query: 158 VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217
S Y + C G+ E+A+ +DK+ +P V++YT LI +G A
Sbjct: 647 FPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIK 706
Query: 218 IFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
++ +M+ C+PN + + + G E A+ F+EM
Sbjct: 707 LWCEMREKGCAPNNIAYTAFINGLRKCGRIETALTYFEEM 746
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/328 (20%), Positives = 126/328 (38%), Gaps = 61/328 (18%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVL--------QQLKQQGQKPSATTYGLVMEVMLACG 106
PD+ + V+ A R EG F V+ + LK P Y +V+E ++ CG
Sbjct: 348 PDVRLLKKVIEAFCR----EGDFAVIGPFINENAEYLKSGSVVP---LYNVVLEELVHCG 400
Query: 107 KYNLVYEFFRK--------------------VQKSYIPNALAYKVLVNTLWREGKTDEAV 146
+ Y+ R +++ PN+ ++ ++V L + K D A+
Sbjct: 401 EVEAAYQLLRSMVCGGQAVNNDVAGGAHMLHIREDAKPNSDSFNIVVCGLCKVKKLDMAL 460
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
+ +DM G G ++ DL LC+ + EE +++ + P +Y L
Sbjct: 461 ALTKDMISLGCKGKILMFNDLIHELCNMDRLEEGYGIFNQMKDLGLTPSEFTYNSLFYGI 520
Query: 207 LDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM--------- 256
+ + A + +M+ N P + C MV+ G EA++ M
Sbjct: 521 CRRKDPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIGFLPDI 580
Query: 257 ---------------AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+D+ H+ R+ K +PD+ N +++ + D+ + + +
Sbjct: 581 VTYSAAMNGMCNTGEVDDALHLFRDISCK-YYLPDVVAHNILINGFRKSSKLDEAQKIME 639
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVE 329
ML GL + + MI + G++E
Sbjct: 640 EMLEKGLFPSVVTYNLMIDVCCKTGRIE 667
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + L P +V YN +++ C + + E A L ++ + ++P+ TY +++ + G
Sbjct: 640 EMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAG 699
Query: 107 KYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
+ + + + ++ +K PN +AY +N L + G+ + A++ E+M +G
Sbjct: 700 RPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIETALTYFEEMVTKGF 751
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 103/235 (43%), Gaps = 25/235 (10%)
Query: 96 GLVMEVMLACGKYNLVYEFFRKVQKSY--IPNALAYKVLVNTLWREGKTDEAVSAVEDME 153
G ++ + A G + F + S+ PN+ Y L++ L + G+ D+A + + +M
Sbjct: 142 GFLLRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQARLREMV 201
Query: 154 RRGIVGSAALY--YDLARCLCSAGKCEEA---LMQMDKICKVANKPLVVSYTGLIQACLD 208
R GS Y L RC C+AG+ ++A +M ++ V L T L+ A
Sbjct: 202 ARCGDGSVDKYTLTSLLRCYCNAGRPDDANDVFQRMSELGWVDEHVL----TTLMVAFSK 257
Query: 209 SGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
G + A + M+ + T +++V + + G ++AM +F +M
Sbjct: 258 WGKVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMV---------- 307
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA 322
G V+ D+ ++ +++ +K ++K M G+ + R L+ +++A
Sbjct: 308 -SYGFVV-DLAMYSVLIEGLCQQKDIARAVKLFKEMKSSGVAPDV-RLLKKVIEA 359
>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
Length = 1263
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 133/305 (43%), Gaps = 29/305 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + +G++ I+E+ V + M +K + E V YN ++
Sbjct: 913 PDEFTYNLLLDAMGKSMRIEEMLKVQEEMH---RKGY------------ESTYVTYNTII 957
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ V+ ++ E A + L QG P+ TYG +++ +L G+ F + ++
Sbjct: 958 SGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCK 1017
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N Y +L+N G T++ +DM +GI Y + LC AG+ + L
Sbjct: 1018 ANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTY 1077
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ ++ +P +++Y LI S ++ A +FN+M K PNL T N ++ +
Sbjct: 1078 FRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGK 1137
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G EA K+++E+ KG P+++T+N ++ + D Y R
Sbjct: 1138 AGKAAEAGKMYEELL-----------TKGWK-PNVFTYNALIRGYSVSGSTDSAYAAYGR 1185
Query: 303 MLHHG 307
M+ G
Sbjct: 1186 MIVGG 1190
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 148/350 (42%), Gaps = 36/350 (10%)
Query: 18 GQAGHIKELFDVIDSMRSLPKKKFKT-----------GTLERWDPRL----EPDIVV--- 59
G+ G + E+FDV+ R + K T G L L E IV+
Sbjct: 229 GRVGDMAEVFDVMQ--RQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAY 286
Query: 60 -YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
YN ++ V+ A V + + G PS TY ++M V R++
Sbjct: 287 TYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREM 346
Query: 119 QKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+ + PN +Y + + L + + DEA + ME G + L + LC AG+
Sbjct: 347 EAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRI 406
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIM 236
+A K+ K KP V+Y L+ D+G+ Q+ I+N MK + + N+V +
Sbjct: 407 SDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAV 466
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ A + G EA+++F EM + KG+V P+ Y++N+++ R+ D
Sbjct: 467 IDALCQVGRVFEALEMFDEMKQ-----------KGIV-PEQYSYNSLISGFLKADRFGDA 514
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
++K M HG N H+ I ++G+ + I L ++ I P
Sbjct: 515 LELFKHMDIHGPKPNGYTHVLFINYYGKSGE-SIKAIQRYELMKSKGIVP 563
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/383 (19%), Positives = 153/383 (39%), Gaps = 66/383 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ +Y LGQA E + ++ M + +PD++ + ++
Sbjct: 353 PNVYSYTICIRVLGQAKRFDEAYRILAKME---------------NEGCKPDVITHTVLI 397
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ A V ++K+ QKP TY +++ G V E + ++ Y
Sbjct: 398 QVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYN 457
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA--------- 174
N +AY +++ L + G+ EA+ ++M+++GIV Y L A
Sbjct: 458 DNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALEL 517
Query: 175 -----------------------GKCEEALMQMDKICKVANK---PLVVSYTGLIQACLD 208
GK E++ + + + +K P VV+ ++
Sbjct: 518 FKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAK 577
Query: 209 SGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
SG + A +F+++K SP+ +T +M+K + F+EA+K+F +M E++
Sbjct: 578 SGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENN------- 630
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
+PD+ N+++D R D+ ++ ++ L + ++ R GK
Sbjct: 631 -----CVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGK 685
Query: 328 VELLEITWEHLARADRITPPALI 350
V+ + E + ++ PP LI
Sbjct: 686 VKEVMHLLEEMYHSN--YPPNLI 706
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 2/174 (1%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
+YN +LN E + Q + QG P +Y ++++ + G+ N +FR+
Sbjct: 1021 TIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQ 1080
Query: 118 V-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
+ + P+ + Y +L++ L + + +EAVS +M+++GIV + Y L L AGK
Sbjct: 1081 LLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGK 1140
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
EA +++ KP V +Y LI+ SG+ +A + +M C PN
Sbjct: 1141 AAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPN 1194
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 121/279 (43%), Gaps = 14/279 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P++ Y + + K+++ A+ +L +++ +G KP T+ ++++V+ G+ +
Sbjct: 351 VKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAK 410
Query: 113 EFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F K++KS P+ + Y L++ G + + M+ G + Y + L
Sbjct: 411 DVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDAL 470
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C G+ EAL D++ + P SY LI L + +A +F M + PN
Sbjct: 471 CQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNG 530
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T + + Y + G E++K Q E K ++PD+ N +L A
Sbjct: 531 YTHVLFINYYGKSG---ESIKAIQRY---------ELMKSKGIVPDVVAGNAVLFGLAKS 578
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
R + V+ + G+ + + MI S+A K +
Sbjct: 579 GRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFD 617
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 102/247 (41%), Gaps = 36/247 (14%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y +L++ + + + +E + E+M R+G + Y + L + + E+A+
Sbjct: 913 PDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDL 972
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ P +Y L+ L +G I++A +FN+M + C N NI++ +
Sbjct: 973 YYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRI 1032
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVI-------------------------PDI 277
G E+ LFQ+M + IN + ++I PD+
Sbjct: 1033 AGNTEKVCHLFQDMVDQG--INPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDL 1090
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV--------E 329
T+N ++D KR ++ ++ M G+ N + +IL +AGK E
Sbjct: 1091 ITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEE 1150
Query: 330 LLEITWE 336
LL W+
Sbjct: 1151 LLTKGWK 1157
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/252 (19%), Positives = 105/252 (41%), Gaps = 16/252 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD VA ++ L ++G + V ++++ + PD + Y ++
Sbjct: 563 PDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMG---------------VSPDTITYTMMI 607
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
C + +++ A + + + P +++ + G+ + + F ++++ +
Sbjct: 608 KCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLE 667
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P Y L+ L REGK E + +E+M + Y + CLC G +AL
Sbjct: 668 PTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDM 727
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
+ + P + SY +I + A IF QMK P+ T ++ ++++
Sbjct: 728 LYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKI 787
Query: 244 GLFEEAMKLFQE 255
GL +EA+ + ++
Sbjct: 788 GLMKEALHIIKD 799
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 80/390 (20%), Positives = 148/390 (37%), Gaps = 77/390 (19%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M+ P Y ++ LG+ G +KE+ +++ M + P+++ Y
Sbjct: 664 MNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEM---------------YHSNYPPNLITY 708
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N +L+ + A +L + +G P ++Y V+ ++ +YN + F +++K
Sbjct: 709 NTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKK 768
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVED----------------------------- 151
IP+ ++ + + G EA+ ++D
Sbjct: 769 VLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEK 828
Query: 152 -MERRGIVGSAALYYD------LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204
+E I+ S+ + D L + LC K EA + K Y LI
Sbjct: 829 SIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLIC 888
Query: 205 ACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM---AEDS 260
+D I A +F +MK C P+ T N+++ A + EE +K+ +EM +S
Sbjct: 889 GLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYES 948
Query: 261 NHINREYDKKGLVIP-------DIY-------------TFNTMLDACAAEKRWDDLELVY 300
++ GLV D+Y T+ +LD R +D E ++
Sbjct: 949 TYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLF 1008
Query: 301 KRMLHHGLHFNAKRHLRMILDASR-AGKVE 329
ML +G N + ++L+ R AG E
Sbjct: 1009 NEMLEYGCKANCTIY-NILLNGHRIAGNTE 1037
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/329 (20%), Positives = 130/329 (39%), Gaps = 52/329 (15%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+ VAY ++ L Q G + E ++ D M+ + P+ YN++++
Sbjct: 459 NVVAYTAVIDALCQVGRVFEALEMFDEMKQ---------------KGIVPEQYSYNSLIS 503
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATT-------YGLVMEVMLACGKYNLVYEFFRKV 118
++ ++ A + + + G KP+ T YG E + A +Y L+
Sbjct: 504 GFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMK------ 557
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
K +P+ +A ++ L + G+ A +++ G+ Y + +C A K +
Sbjct: 558 SKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFD 617
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
EA+ + + P V++ LI +G A IF Q+K P T N ++
Sbjct: 618 EAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLL 677
Query: 238 KAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKGLV---------------I 274
G +E M L +EM + N I K G V I
Sbjct: 678 AGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCI 737
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRM 303
PD+ ++NT++ E+R+++ ++ +M
Sbjct: 738 PDLSSYNTVIYGLVKEERYNEAFSIFCQM 766
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/348 (20%), Positives = 130/348 (37%), Gaps = 59/348 (16%)
Query: 48 RWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKP----SATTYGLVMEVML 103
R PR P A + + +G L++ + +KP + + ++E+M
Sbjct: 167 RVQPRAPPPCDERRAAEDVIHALRSADGPAEALERFRSAARKPRVAQTTASCNYMLELMR 226
Query: 104 ACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G+ + E F +Q+ + N + + L EG A A+ M+ GIV +A
Sbjct: 227 GHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAY 286
Query: 163 LYYDLARCLCSAGKCEEAL-----MQMDKICKVAN------------------------- 192
Y L L +G EAL M +D +
Sbjct: 287 TYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREM 346
Query: 193 -----KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLF 246
KP V SYT I+ + A I +M+N C P+++T ++++ + G
Sbjct: 347 EAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRI 406
Query: 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306
+A +F +M ++ D+K PD T+ T+LD + ++ M
Sbjct: 407 SDAKDVFWKM--------KKSDQK----PDRVTYITLLDKFGDNGDSQSVMEIWNAMKAD 454
Query: 307 GLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERF 354
G + N + +I + G+V +E L D + ++ E++
Sbjct: 455 GYNDNVVAYTAVIDALCQVGRV------FEALEMFDEMKQKGIVPEQY 496
>gi|168054024|ref|XP_001779433.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669118|gb|EDQ55711.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 570
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 113/243 (46%), Gaps = 9/243 (3%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PD + Y+ +++ R + A ++ + G P TY +++V GKY+
Sbjct: 74 VRPDNITYSTLISCANRCNYQDAAMAWFDRMHEAGCVPDVVTYSTMIDVYGKMGKYDEAI 133
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +V Q + P+ + Y +V R G AVS E+M+ G+ A +Y + CL
Sbjct: 134 ALYERVKQAGWKPDKVTYGTMVRLFGRAGYIRAAVSIFEEMKGSGVQPDAIVYNIMIACL 193
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV 231
AG+ AL +++ + KP V+ + +++ GN+ +F +++ + +++
Sbjct: 194 GRAGRMGHALKVFEEMEREGVKPNAVTLSTVMETYSRCGNVMEGLEVFQRLRQGVACDVI 253
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN--------REYDKKGLVIPDIYTFNTM 283
N ++K E GL EA + +EM E + N Y KKG+ + TF+ M
Sbjct: 254 VYNAVLKMCREAGLASEAEQYLREMTESGHQPNDWTYRNMISVYAKKGMAVEAHRTFSQM 313
Query: 284 LDA 286
++A
Sbjct: 314 VEA 316
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 105/235 (44%), Gaps = 18/235 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ G+AG+I+ + + M+ ++PD +VYN ++
Sbjct: 146 PDKVTYGTMVRLFGRAGYIRAAVSIFEEMKG---------------SGVQPDAIVYN-IM 189
Query: 65 NACVRRKQWEG-AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
AC+ R G A V ++++++G KP+A T VME CG E F+++++
Sbjct: 190 IACLGRAGRMGHALKVFEEMEREGVKPNAVTLSTVMETYSRCGNVMEGLEVFQRLRQGVA 249
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y ++ G EA + +M G + Y ++ G EA
Sbjct: 250 CDVIVYNAVLKMCREAGLASEAEQYLREMTESGHQPNDWTYRNMISVYAKKGMAVEAHRT 309
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
++ + + V++YT L+QA ++ I ++M + C+P+ C +++
Sbjct: 310 FSQMVEAGYQIDVMAYTSLLQAYGNAKEYNKVQEILDEMTSVNCAPDERLCCVIL 364
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 89/226 (39%), Gaps = 15/226 (6%)
Query: 110 LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
L++ + R S + N Y V++ L R + + + EDM + Y L
Sbjct: 28 LLFRWLRAEHSSSL-NIYTYNVMLKVLRRGRQWEFSQQIAEDMANADVRPDNITYSTLIS 86
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SP 228
C + A+ D++ + P VV+Y+ +I G A ++ ++K P
Sbjct: 87 CANRCNYQDAAMAWFDRMHEAGCVPDVVTYSTMIDVYGKMGKYDEAIALYERVKQAGWKP 146
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
+ VT MV+ + G A+ +F+EM K V PD +N M+
Sbjct: 147 DKVTYGTMVRLFGRAGYIRAAVSIFEEM------------KGSGVQPDAIVYNIMIACLG 194
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEI 333
R V++ M G+ NA ++ SR G V E LE+
Sbjct: 195 RAGRMGHALKVFEEMEREGVKPNAVTLSTVMETYSRCGNVMEGLEV 240
>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 724
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 119/256 (46%), Gaps = 13/256 (5%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVN 134
A ++ ++ QG PS+ T V+E+ + G + F ++ + P++ ++K++V
Sbjct: 189 AVGMVMDMQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSSFKLMVI 248
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194
+R+GK EA + M +RG + A + LC G A+ K+ + KP
Sbjct: 249 GCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYFRKMIDLGFKP 308
Query: 195 LVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253
++++T LI G+I+ A + +M +N PN+ T ++ + G E+A +LF
Sbjct: 309 NLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLF 368
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK 313
++ + + P+++T+ +M+ E + + E+++ RM GL N
Sbjct: 369 LKLV-----------RSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVN 417
Query: 314 RHLRMILDASRAGKVE 329
+ +I +AG +
Sbjct: 418 TYTTLINGHCKAGNFD 433
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 107/241 (44%), Gaps = 15/241 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD + ++ C R + + A L + Q+G P T L++ + G N +
Sbjct: 238 PDSSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWY 297
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
FRK + + PN + + L++ L ++G +A +E+M R G + + L LC
Sbjct: 298 FRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCK 357
Query: 174 AGKCEEALMQMDKICKV-ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLV 231
G E+A K+ + KP V +YT +I + A +F++MK PN+
Sbjct: 358 RGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVN 417
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T ++ + + G F+ A +L M D +G P+IYT+N ++D+ +
Sbjct: 418 TYTTLINGHCKAGNFDRAYELMNLM-----------DDEGFR-PNIYTYNAVIDSLCKKS 465
Query: 292 R 292
R
Sbjct: 466 R 466
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/330 (21%), Positives = 136/330 (41%), Gaps = 41/330 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + + S+ L + G IK+ F++++ M + G W +P++ + A++
Sbjct: 308 PNLINFTSLIDGLCKKGSIKQAFEMLEEM-------VRNG----W----KPNVYTHTALI 352
Query: 65 NACVRRKQWEGAFWV-LQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSY 122
+ +R E AF + L+ ++ KP+ TY ++ K N F ++ ++
Sbjct: 353 DGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGL 412
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN Y L+N + G D A + M+ G + Y + LC + EA
Sbjct: 413 FPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYE 472
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
++K + V+YT LIQ +I+ A F +M K ++ NI++ A+
Sbjct: 473 LLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMNKTGFEADMRLNNILIAAFC 532
Query: 242 EHGLFEEAMKLFQEMA--------EDSNHINREYDKKG---------------LVIPDIY 278
+E+ +LFQ + E + Y K+G +PD +
Sbjct: 533 RQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSF 592
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
T+ +++ + D+ +Y+ M+ GL
Sbjct: 593 TYGSLISGLCKKSMVDEACKLYEAMIDRGL 622
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 86/209 (41%), Gaps = 15/209 (7%)
Query: 140 GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSY 199
G+ +EAV V DM+ +G+ S+ + +G + A D++ P S+
Sbjct: 184 GRLNEAVGMVMDMQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSSF 243
Query: 200 TGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
++ C G IQ A + M + F P+ TC +++ A E+GL A+ F++M
Sbjct: 244 KLMVIGCFRDGKIQEADRWLSGMIQRGFI-PDNATCTLILSALCENGLVNRAIWYFRKM- 301
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
I+ + P++ F +++D + + + M+ +G N H
Sbjct: 302 -----IDLGFK------PNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTA 350
Query: 318 MILDASRAGKVELLEITWEHLARADRITP 346
+I + G E + L R+D P
Sbjct: 351 LIDGLCKRGWTEKAFRLFLKLVRSDIYKP 379
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 75/171 (43%), Gaps = 4/171 (2%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
E D+ + N ++ A R+K+ + + + Q + G P+ TY ++ G ++L
Sbjct: 517 FEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLAL 576
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++F +++ +P++ Y L++ L ++ DEA E M RG+ LA
Sbjct: 577 KYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEY 636
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
C A++ ++ + K K + + L++ + AA F ++
Sbjct: 637 CKRNDSASAMIVLEPLDK---KLWIRTVRTLVRKLCSEKKVGVAALFFQKL 684
>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Vitis vinifera]
Length = 746
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/334 (21%), Positives = 144/334 (43%), Gaps = 42/334 (12%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD V Y ++ + G ++E F+++DSM L+P + YNA+
Sbjct: 286 FPDVVTYNTLINAYCRQGLLEEAFELMDSMSG---------------KGLKPCVFTYNAI 330
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE---FFRKVQK 120
+N + ++ A VL ++ + G P TY +++ + C N++ F +
Sbjct: 331 INGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL--VECCRNDNMMDAERIFDEMPSQ 388
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+P+ +++ L+ L + G D+A+ DM+ G+ +Y L C G EA
Sbjct: 389 GVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEA 448
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
L D++ + VV+Y ++ + A +F +M + P+ T ++
Sbjct: 449 LKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLING 508
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKR------ 292
Y + G +A+ LF+ M + + + PD+ T+NT++D C +
Sbjct: 509 YSKDGNMNKAVTLFEMMIQRN------------LKPDVVTYNTLIDGFCKGSEMEKVNEL 556
Query: 293 WDDL--ELVYKRMLHHGLHFNAKRHLRMILDASR 324
W+D+ +Y + +G+ N ++ + +A R
Sbjct: 557 WNDMISRRIYPNHISYGILINGYCNMGCVSEAFR 590
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 132/310 (42%), Gaps = 23/310 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY---NLV 111
PD+V YN ++NA R+ E AF ++ + +G KP TY ++ + GKY V
Sbjct: 287 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 346
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ K+ S P+ Y +L+ R +A ++M +G+V + L L
Sbjct: 347 LDEMLKIGMS--PDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLL 404
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
G ++AL + P V YT LI +G + A + ++M + C ++
Sbjct: 405 SKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDV 464
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N ++ + + EA +LF EM E V PD YTF T+++ + +
Sbjct: 465 VTYNTILNGLCKEKMLSEADELFTEMTERG------------VFPDFYTFTTLINGYSKD 512
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPP--- 347
+ +++ M+ L + + +I + ++E + W + + RI P
Sbjct: 513 GNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMI-SRRIYPNHIS 571
Query: 348 -ALIKERFCN 356
++ +CN
Sbjct: 572 YGILINGYCN 581
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/325 (21%), Positives = 142/325 (43%), Gaps = 32/325 (9%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ- 119
N++L V+ + A+ + Q++ + G + + T +++ + K F ++
Sbjct: 223 NSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEE 282
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K P+ + Y L+N R+G +EA ++ M +G+ Y + LC GK
Sbjct: 283 KGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLR 342
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A +D++ K+ P +Y L+ C + N+ +A IF++M P+LV+ + ++
Sbjct: 343 AKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIG 402
Query: 239 AYLEHGLFEEAMKLFQEM------------------------AEDSNHINREYDKKGLVI 274
++G ++A+K F++M ++ + E ++G V+
Sbjct: 403 LLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVL 462
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VEL 330
D+ T+NT+L+ EK + + ++ M G+ + +I S+ G V L
Sbjct: 463 -DVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTL 521
Query: 331 LEITWEHLARADRITPPALIKERFC 355
E+ + + D +T LI + FC
Sbjct: 522 FEMMIQRNLKPDVVTYNTLI-DGFC 545
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/219 (19%), Positives = 90/219 (41%), Gaps = 16/219 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ + ++++ ++ + M S R+ P+ + Y ++
Sbjct: 532 PDVVTYNTLIDGFCKGSEMEKVNELWNDMIS---------------RRIYPNHISYGILI 576
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N AF + ++ ++G + + T +++ G EF + K +
Sbjct: 577 NGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIV 636
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L+N +E D A + V ME G++ Y + G+ +EA +
Sbjct: 637 PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 696
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
M K+ + P +YT LI + N++ A + ++M
Sbjct: 697 MLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEM 735
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 70/176 (39%), Gaps = 21/176 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDP 51
YP+ ++Y + G + E F + D M ++ K + G + D
Sbjct: 566 YPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADE 625
Query: 52 RLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
L PD + YN ++N ++ + + AF ++ +++ G P TY +++
Sbjct: 626 FLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFS 685
Query: 104 ACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
G+ K +++ P+ Y L+N + EA ++M +RG V
Sbjct: 686 RQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFV 741
>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
Length = 528
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/357 (21%), Positives = 143/357 (40%), Gaps = 52/357 (14%)
Query: 29 VIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ 88
VI + + + G + + PD + Y +++ + ++ A VLQ++
Sbjct: 11 VIGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARH 70
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVS 147
P TT +V++ + + + E + + + NA+ Y LV+ L + + DEAV+
Sbjct: 71 VPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVA 130
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
VE M RG + Y + C A + +EA M+++ P +++YT LI
Sbjct: 131 LVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFC 190
Query: 208 DS-----------------------------------GNIQNAAYIFNQMKNFCSPNLVT 232
S G +++A IF +M C+P +T
Sbjct: 191 KSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS--CAPTAIT 248
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ Y G +EA++L +M +D PD+ T+ T++ A R
Sbjct: 249 YNSLIGGYCRAGDMDEAIRLLGKMVDDK------------CAPDVVTYTTLMSAFCKMGR 296
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPAL 349
DD ++++M+ + L + ++ G++E E + R R PP +
Sbjct: 297 LDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITR--RGCPPTI 351
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/277 (20%), Positives = 129/277 (46%), Gaps = 26/277 (9%)
Query: 26 LFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ 85
L D +D R L ++ G + + + Y+A+++ + ++ + A +++ + +
Sbjct: 86 LGDRVDDARELVEEMLHRG--------MAANAITYSALVDGLCKCERLDEAVALVETMAE 137
Query: 86 QGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDE 144
+G P+ TY ++ + + + F + V + P+ + Y L+ +
Sbjct: 138 RGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGR 197
Query: 145 AVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204
+ + ++ RRG Y + LC AG+ +A+ D +++ P ++Y LI
Sbjct: 198 GLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAV---DIFEEMSCAPTAITYNSLIG 254
Query: 205 ACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
+G++ A + +M + C+P++VT ++ A+ + G ++A +LFQ+M +N +
Sbjct: 255 GYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMV--ANKL 312
Query: 264 NREYDKKGLVIPDIYTFNTMLDACAAEKRWDD-LELV 299
+ PD+ TF +++D E R +D LEL+
Sbjct: 313 S----------PDVVTFTSLVDGLCGEGRMEDALELL 339
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 117/256 (45%), Gaps = 19/256 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ + G + + +++ M + +L PD+V + +++
Sbjct: 279 PDVVTYTTLMSAFCKMGRLDDAYELFQQMVA---------------NKLSPDVVTFTSLV 323
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ + E A +L+++ ++G P+ TY V++ + E + + ++
Sbjct: 324 DGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFV 383
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRG--IVGSAALYYDLARCLCSAGKCEEAL 181
PN + Y +LV R G+TD+A+ ++ + G S A+Y + LC G+ ++A+
Sbjct: 384 PNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAV 443
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAY 240
+++ + P ++ ++ A + Q A + +M + +P TC+ +V AY
Sbjct: 444 QFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAY 503
Query: 241 LEHGLFEEAMKLFQEM 256
G+ ++A +L E+
Sbjct: 504 CRAGMIQKADELASEL 519
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 117/293 (39%), Gaps = 34/293 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y SI +A + E ++ M + PDI+ Y A++
Sbjct: 142 PTVVTYNSIITGFCRARRVDEAHGFMEQMVA---------------EGCHPDIITYTALI 186
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + +L ++ ++G P TY V++ + G+ + F ++ S P
Sbjct: 187 GGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM--SCAP 244
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
A+ Y L+ R G DEA+ + M Y L C G+ ++A
Sbjct: 245 TAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELF 304
Query: 185 DKICKVANK--PLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
++ VANK P VV++T L+ G +++A + ++ + C P + T N +V Y
Sbjct: 305 QQM--VANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYC 362
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
+ +A +L ++ +G V P+ T+N ++ C R D
Sbjct: 363 KANQVRKAEELVA-----------DFRSRGFV-PNTVTYNILVAGCCRAGRTD 403
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 124/316 (39%), Gaps = 67/316 (21%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P +V YN+++ R ++ + A ++Q+ +G P TY ++ E
Sbjct: 142 PTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLEL 201
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+V ++ + P+ + Y +++ L + G+ +AV E+M +A Y L C
Sbjct: 202 LGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIGGYCR 258
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
AG +EA+ + K+ P VV+YT L+ A G + +A +F QM N SP++VT
Sbjct: 259 AGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVT 318
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAE------------------DSNHINR------EYD 268
+V G E+A++L +E+ +N + + ++
Sbjct: 319 FTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFR 378
Query: 269 KKGLVIPDIYTFNTM-------------------------------------LDACAAEK 291
+G V P+ T+N + LDA +
Sbjct: 379 SRGFV-PNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDG 437
Query: 292 RWDDLELVYKRMLHHG 307
R DD Y+ M+ G
Sbjct: 438 RTDDAVQFYEEMIQRG 453
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 108/226 (47%), Gaps = 22/226 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTLERWDPRLEPDIVVYNA 62
PD V + S+ L G +++ ++++ + R P P I YN
Sbjct: 314 PDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCP-----------------PTIYTYNC 356
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV--QK 120
V++ + Q A ++ + +G P+ TY +++ G+ + ++ ++ +
Sbjct: 357 VVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEG 416
Query: 121 SYIPNALA-YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
P ++A Y ++++ L R+G+TD+AV E+M +RG V +AA + + LC A + ++
Sbjct: 417 GPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQ 476
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
A ++++ K + P + ++ A +G IQ A + ++++ +
Sbjct: 477 AHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELRLY 522
>gi|115461911|ref|NP_001054555.1| Os05g0132000 [Oryza sativa Japonica Group]
gi|52353663|gb|AAU44229.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113578106|dbj|BAF16469.1| Os05g0132000 [Oryza sativa Japonica Group]
gi|125550727|gb|EAY96436.1| hypothetical protein OsI_18334 [Oryza sativa Indica Group]
Length = 637
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 139/327 (42%), Gaps = 36/327 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD V++ +I + + G ++E + F T+ P YNAV
Sbjct: 189 HPDEVSHGTIVSGMCKLGRVEE------------ARGFLAETV--------PVQASYNAV 228
Query: 64 LNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKS 121
++A C + WE F V+ ++ Q+G +P+ TY +++ + + R V
Sbjct: 229 VHALCGEFRMWE-VFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMG 287
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
PN L + LV + +GK +A+S M G S Y L R LC G + AL
Sbjct: 288 CTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGAL 347
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAY 240
+ + + A P +Y+ L+ ++G++ A I+N+MK+ C PN+V M+
Sbjct: 348 DFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVL 407
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ +F++A L +M D+ P+ TFNT++ R V+
Sbjct: 408 CKKMMFDQAESLIDKMLMDN------------CPPNTVTFNTLIGRLCDCGRVGRALNVF 455
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGK 327
M +G H N + + ++ R G
Sbjct: 456 HGMRRNGCHPNDRTYNELLHGLFREGN 482
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/268 (19%), Positives = 121/268 (45%), Gaps = 17/268 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P++ YN ++ A + + + A +L ++ ++G P ++G ++ M G+
Sbjct: 153 VDPNVYTYNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGRV---- 208
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
E R +P +Y +V+ L E + E S V +M +RG+ + Y + C
Sbjct: 209 EEARGFLAETVPVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFC 268
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLV 231
A + A + ++ + P V+++T L++ + G + +A +++ M + +P+ +
Sbjct: 269 KARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTI 328
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
+ N++++ G + A+ F M K+ ++P+ T++T++D +
Sbjct: 329 SYNVLIRGLCCIGDLKGALDFFNSM------------KRNALLPNATTYSTLVDGFSNAG 376
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMI 319
D L++ M G N + MI
Sbjct: 377 DLDGAMLIWNEMKSSGCKPNVVVYTNMI 404
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/274 (20%), Positives = 113/274 (41%), Gaps = 22/274 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKKFKT-------------GTLER 48
P T++Y + L G +K D +SM+ LP + G +
Sbjct: 325 PSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLI 384
Query: 49 WD----PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
W+ +P++VVY +++ ++ ++ A ++ ++ P+ T+ ++ +
Sbjct: 385 WNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCD 444
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
CG+ F ++++ PN Y L++ L+REG +A + V +M G S
Sbjct: 445 CGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVT 504
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + CLC + A++ + ++ +P ++ +I A G + AA + QM
Sbjct: 505 YNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQMN 564
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
C N+V I++ G AM +M
Sbjct: 565 AVNCPRNVVAYTILISELCNQGKLSNAMVYLLKM 598
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 21/188 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTG-------- 44
P+TV + ++ L G + +V MR L F+ G
Sbjct: 430 PNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAM 489
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+E + E +V YN V+N + + A +L ++ QG +P A T+ ++
Sbjct: 490 VIEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCK 549
Query: 105 CGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK ++ ++ P N +AY +L++ L +GK A+ + M GI + A
Sbjct: 550 EGKVSIAACLLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGICPNEAT 609
Query: 164 YYDLARCL 171
+ L R +
Sbjct: 610 WNVLVRAI 617
>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Vitis vinifera]
Length = 539
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/351 (23%), Positives = 147/351 (41%), Gaps = 42/351 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM----------------RSLPKKKFKTGTL-- 46
PDT + ++ L G I E DV D M L K + T L
Sbjct: 124 PDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNL 183
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E + PDI YN++++A +W+ +L ++ + P+ + +V++ +
Sbjct: 184 FSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCK 243
Query: 105 CGKYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK ++ +Q P+ + Y L++ + DEAV + M R G V +
Sbjct: 244 EGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVS 303
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L C + ++A+ +++C+ P ++Y+ LI G +Q+A +FN+M
Sbjct: 304 YNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMV 363
Query: 224 NFCS--PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
C PNLVT +I++ ++ EAM L + + E SN + PD+ +N
Sbjct: 364 A-CGQIPNLVTYSILLDYLCKNHRLAEAMALLKAI-EGSN-----------LDPDVQVYN 410
Query: 282 TMLDACAAEKRWDDLEL---VYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+D R DLE ++ + GL + H MI + G ++
Sbjct: 411 IAIDGMC---RAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLD 458
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 115/258 (44%), Gaps = 17/258 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V+ + L + G + E DV+D M + G +EPD+V Y A++
Sbjct: 229 PNVVSLNIVVDALCKEGKVTEAHDVVDMM-------IQGG--------VEPDVVTYAALM 273
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN-LVYEFFRKVQKSYI 123
+ R + + A V + + G + +Y ++ + + +Y F ++ I
Sbjct: 274 DGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELI 333
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L++ L G+ +A++ +M G + + Y L LC + EA+
Sbjct: 334 PNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMAL 393
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ I P V Y I +G+++ A +F+ + P++ T NIM++ +
Sbjct: 394 LKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCK 453
Query: 243 HGLFEEAMKLFQEMAEDS 260
GL +EA KLF+EM E+
Sbjct: 454 RGLLDEASKLFREMDENG 471
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 121/293 (41%), Gaps = 51/293 (17%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PD+ V+N+ + + A VL ++ + G +P T+ ++ + GK
Sbjct: 87 IPPDVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEAL 146
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL--AR 169
+ F K V + + PN + Y L+N L ++ + EA++ +M +GI Y L A
Sbjct: 147 DVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHAL 206
Query: 170 C---------------------------------LCSAGKCEEALMQMDKICKVANKPLV 196
C LC GK EA +D + + +P V
Sbjct: 207 CNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDV 266
Query: 197 VSYTGLIQA-CLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
V+Y L+ CL S + A +F+ M +N C N+V+ N ++ Y + ++AM LF+
Sbjct: 267 VTYAALMDGHCLRS-EMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFE 325
Query: 255 EMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
EM +IP+ T++T++ R D ++ M+ G
Sbjct: 326 EMCRQE------------LIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACG 366
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 14/203 (6%)
Query: 108 YNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
Y+ V +K+ IP + +++N+ + D A+S + + + G A +
Sbjct: 72 YSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTT 131
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNF 225
L R LC GK EAL DK+ +P VV+Y L+ + A +F++M
Sbjct: 132 LVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKG 191
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
SP++ T N ++ A ++ L EM K ++P++ + N ++D
Sbjct: 192 ISPDIFTYNSLIHALCNLCEWKHVTTLLNEMV------------KSKIMPNVVSLNIVVD 239
Query: 286 ACAAEKRWDDLELVYKRMLHHGL 308
A E + + V M+ G+
Sbjct: 240 ALCKEGKVTEAHDVVDMMIQGGV 262
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 1/124 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD+ VYN ++ R E A + L +G +P T+ +++ + G +
Sbjct: 402 LDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEAS 461
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ FR++ + + N Y + L + KT A+ +E+M RG + L + L
Sbjct: 462 KLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVKML 521
Query: 172 CSAG 175
G
Sbjct: 522 SDDG 525
>gi|8777358|dbj|BAA96948.1| salt-inducible protein-like [Arabidopsis thaliana]
Length = 1012
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 141/320 (44%), Gaps = 46/320 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKF---------------KTGTL--- 46
P+ V Y ++ L Q G + E+ D++ R L + F K G L
Sbjct: 246 PNLVTYTTLVSALCQLGKVDEVRDLV---RRLEDEGFEFDCVFYSNWIHGYFKGGALVDA 302
Query: 47 -----ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
E + + D+V Y+ +++ + E A +L ++ ++G +P+ TY ++
Sbjct: 303 LMQDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRG 362
Query: 102 MLACGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ GK + F ++ I + Y L++ + R+G + A S + DME+RGI S
Sbjct: 363 LCKMGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPS 422
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y + LC AG+ EA D++ K V++Y+ L+ + + NI I
Sbjct: 423 ILTYNTVINGLCMAGRVSEA----DEVSKGVVGD-VITYSTLLDSYIKVQNIDAVLEIRR 477
Query: 221 QMKNFCSP-NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
+ P +LV CNI++KA+L G + EA L++ M E + PD T
Sbjct: 478 RFLEAKIPMDLVMCNILLKAFLLMGAYGEADALYRAMPEMD------------LTPDTAT 525
Query: 280 FNTMLDA-CAAEKRWDDLEL 298
+ TM+ C + + LE+
Sbjct: 526 YATMIKGYCKTGQIEEALEM 545
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 113/255 (44%), Gaps = 19/255 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLV 111
L P++V Y +++A + + + ++++L+ +G + Y + G + +
Sbjct: 244 LVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYFKGGALVDAL 303
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ V+K + ++Y +L++ L +EG +EA+ + M + G+ + Y + R L
Sbjct: 304 MQDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGL 363
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C GK EEA + ++I V + Y LI GN+ A + M + P++
Sbjct: 364 CKMGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSI 423
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T N ++ G EA ++ KG V+ D+ T++T+LD+
Sbjct: 424 LTYNTVINGLCMAGRVSEADEV----------------SKG-VVGDVITYSTLLDSYIKV 466
Query: 291 KRWDDLELVYKRMLH 305
+ D + + +R L
Sbjct: 467 QNIDAVLEIRRRFLE 481
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/230 (19%), Positives = 98/230 (42%), Gaps = 4/230 (1%)
Query: 29 VIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ 88
++D++RSL E + D++ Y ++N + A + K +G
Sbjct: 670 LVDNLRSLDAYLLVVNAGETTLSSM--DVIDYTIIINGLCKEGFLVKALNLCSFAKSRGV 727
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVS 147
+ TY ++ + G F ++ +P+ + Y +L++ L +EG +A
Sbjct: 728 TLNTITYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEK 787
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
++ M +G+V + +Y + C G+ E+A+ + + P + + +I+
Sbjct: 788 LLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYC 847
Query: 208 DSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
G+++ A +F + K+ S + ++K + G EEA L +EM
Sbjct: 848 KKGDMEEALSVFTEFKDKNISADFFGFLFLIKGFCTKGRMEEARGLLREM 897
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 13/181 (7%)
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N + Y L+N L ++G EA+ + +E G+V S Y L LC G +A +
Sbjct: 730 NTITYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLL 789
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCSPNLVTCNIMVKAYLEH 243
D + P ++ Y ++ G ++A + + +M +P+ T + M+K Y +
Sbjct: 790 DSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKK 849
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G EEA+ +F E +D N + D + F ++ + R ++ + + M
Sbjct: 850 GDMEEALSVFTEF-KDKN-----------ISADFFGFLFLIKGFCTKGRMEEARGLLREM 897
Query: 304 L 304
L
Sbjct: 898 L 898
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/176 (19%), Positives = 72/176 (40%), Gaps = 16/176 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+T+ Y S+ L Q G + E + DS+ ++ L P V Y +++
Sbjct: 730 NTITYNSLINGLCQQGCLVEALRLFDSLENIG---------------LVPSEVTYGILID 774
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEFFRKVQKSYIP 124
+ + A +L + +G P+ Y +++ G+ + + RK+ P
Sbjct: 775 NLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTP 834
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+A ++ ++G +EA+S + + + I + L + C+ G+ EEA
Sbjct: 835 DAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADFFGFLFLIKGFCTKGRMEEA 890
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 70/376 (18%), Positives = 138/376 (36%), Gaps = 86/376 (22%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ ++ D+V+ N +L A + + A + + + + P TY +++ G+
Sbjct: 481 EAKIPMDLVMCNILLKAFLLMGAYGEADALYRAMPEMDLTPDTATYATMIKGYCKTGQIE 540
Query: 110 LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV----------- 158
E F +++KS + A+ Y +++ L ++G D A + ++ +G+
Sbjct: 541 EALEMFNELRKSSVSAAVCYNRIIDALCKKGMLDTATEVLIELWEKGLYLDIHTSRTLLH 600
Query: 159 ---------GSAALYYDLAR---------------CLCSAGKCEEAL---MQMDKICKVA 191
G L Y L + LC G E A+ M M +
Sbjct: 601 SIHANGGDKGILGLVYGLEQLNSDVCLGMLNDAILLLCKRGSFEAAIEVYMIMRRKGLTV 660
Query: 192 NKPLVV------------SYTGLIQA---CLDSGNIQNAAYIFNQM---------KNFCS 227
P + +Y ++ A L S ++ + I N + N CS
Sbjct: 661 TFPSTILKTLVDNLRSLDAYLLVVNAGETTLSSMDVIDYTIIINGLCKEGFLVKALNLCS 720
Query: 228 --------PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
N +T N ++ + G EA++LF + + GLV P T
Sbjct: 721 FAKSRGVTLNTITYNSLINGLCQQGCLVEALRLFDSL-----------ENIGLV-PSEVT 768
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE--LLEITWEH 337
+ ++D E + D E + M+ GL N + ++ + G+ E + ++ +
Sbjct: 769 YGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKM 828
Query: 338 LARA--DRITPPALIK 351
+ R D T ++IK
Sbjct: 829 MGRVTPDAFTVSSMIK 844
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 50/248 (20%), Positives = 102/248 (41%), Gaps = 28/248 (11%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP-NALAYKVLVN 134
+ LQ L + G P+ + + + K+N + +F+ ++ I N Y ++
Sbjct: 51 GLFSLQSLLKSGFSPTLNSIDRFLRYLYRLQKFNCILQFYSQLDSKQININHRIYSIVSW 110
Query: 135 TLWREGKTDEA-------VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
+ ++A +S R ++ S + + R S G L+ D +
Sbjct: 111 AFLNLNRYEDAEKFINIHISKASIFPRTHMLDSLIHGFSITRDDPSKG----LLILRDCL 166
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSP--NLVTCNIMVKAYLEH 243
P +++ LI ++ G + NA + M KN P N V C+ ++ + +
Sbjct: 167 RNHGAFPSSLTFCSLIYRFVEKGEMDNAIEVLEMMTNKNVNYPFDNFV-CSAVISGFCKI 225
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G E A+ F E A DS G+++P++ T+ T++ A + D++ + +R+
Sbjct: 226 GKPELALGFF-ESAVDS----------GVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRL 274
Query: 304 LHHGLHFN 311
G F+
Sbjct: 275 EDEGFEFD 282
>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
Length = 431
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 133/297 (44%), Gaps = 34/297 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSL--PKKKFKTGTLERWDPRLE-------- 54
PDT+ Y + LG+A I E + SM+S+ P + L R R +
Sbjct: 82 PDTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLL 141
Query: 55 ----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
P Y V++ + + E A VL+++ + P T ++ +
Sbjct: 142 FDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSR 201
Query: 105 CGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ L E F +++KS + N +++ +++ + GK A +++ME RGI ++
Sbjct: 202 TGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSIT 261
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
+ L CL A EA + ++ P V +YT +I+A +GN+ A +F M
Sbjct: 262 FNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDME 321
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
K CS N+VT N+++ A ++ G +++A ++ +M KK ++PD T
Sbjct: 322 KAGCSANVVTYNLLIDALVKAGRYQDARDIYFDM------------KKKGILPDAIT 366
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 108/235 (45%), Gaps = 16/235 (6%)
Query: 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR 116
++V NAV+ A R + Q+L + G KP+A TY V++ ++ G L +F
Sbjct: 14 VLVSNAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMDFLD 73
Query: 117 KVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
K+ K+ + P+ L Y V+++ L + DEA M+ G Y L R L
Sbjct: 74 KMIKTGLEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAILIRSLGRCK 133
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTC 233
+ EEA + D++ + P +YT +I +G I++A + +M KN +P+ T
Sbjct: 134 RDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNL-APDDYTL 192
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
N ++ A G E A ++F+ M KK V + +FN MLD C
Sbjct: 193 NSLITAVSRTGRTELACEIFERM------------KKSGVAVNTVSFNAMLDCCG 235
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/345 (22%), Positives = 144/345 (41%), Gaps = 66/345 (19%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S P+ Y+ + +L +AG++ D +D M KTG LEPD ++YN
Sbjct: 44 GSKPNAYTYKCVIQSLVKAGNVVLAMDFLDKM-------IKTG--------LEPDTLLYN 88
Query: 62 AVLN----------ACV-------------------------RRKQWEGAFWVLQQLKQQ 86
VL+ AC R K+ E A + +++++
Sbjct: 89 VVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEER 148
Query: 87 GQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEA 145
G PSA Y V+++ G+ +K + K+ P+ L+ + R G+T+ A
Sbjct: 149 GCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELA 208
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
E M++ G+ + + + C AGK A MD++ KP +++ LI
Sbjct: 209 CEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLIN- 267
Query: 206 CLDSGNIQNAAY-IFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
CL + AY + +M++ +P++ T M++A+ + G +A ++F +M
Sbjct: 268 CLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDM------- 320
Query: 264 NREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+K ++ T+N ++DA R+ D +Y M G+
Sbjct: 321 -----EKAGCSANVVTYNLLIDALVKAGRYQDARDIYFDMKKKGI 360
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 104/264 (39%), Gaps = 27/264 (10%)
Query: 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK 186
L ++ R + + + +++++ G +A Y + + L AG A+ +DK
Sbjct: 15 LVSNAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMDFLDK 74
Query: 187 ICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGL 245
+ K +P + Y ++ + I A +F MK+ C + T I++++
Sbjct: 75 MIKTGLEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAILIRSLGRCKR 134
Query: 246 FEEAMKLFQEMAEDS--------NHINREYDKKGLV---------------IPDIYTFNT 282
EEA LF EM E ++ Y K G + PD YT N+
Sbjct: 135 DEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNS 194
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL-LEITWEHLARA 341
++ A + R + +++RM G+ N M+ +AGKV L + E AR
Sbjct: 195 LITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARG 254
Query: 342 DRITPPALIKERFCNRLENKDYGS 365
I P ++ N L Y S
Sbjct: 255 --IKPNSITFNTLINCLGRAKYAS 276
>gi|125606474|gb|EAZ45510.1| hypothetical protein OsJ_30168 [Oryza sativa Japonica Group]
Length = 651
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 141/309 (45%), Gaps = 33/309 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P + Y + L AG + +V D+M + + ++ PD+V YN ++
Sbjct: 265 PSRLIYNCLLDGLVNAGLLDTAVNVFDAMST--------------EDQVRPDVVSYNILI 310
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
R + A L ++++Q + P TY +M+ + G + + F+++++ +
Sbjct: 311 KGYCRAGRAHDAMARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGM 370
Query: 124 PNAL---AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
N + AY +++ L ++GK E ++ E M +RG +AA+Y L + G+ +EA
Sbjct: 371 GNDIPQHAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEA 430
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACL-DSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVK 238
+ +++ K V+Y G+I CL G + A F + + N + ++
Sbjct: 431 MALFERMKDSGLKLDSVTY-GVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLID 489
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ + G+ +++ +LF+EM KG V PD Y +N ++D A R DD
Sbjct: 490 GFGKAGMVDQSKELFEEMI-----------AKGFV-PDSYCYNVLIDGLAKSGRMDDACA 537
Query: 299 VYKRMLHHG 307
+YKRM G
Sbjct: 538 LYKRMEDDG 546
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 2/226 (0%)
Query: 29 VIDSMRSLPKKKFKTGTLERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG 87
+IDSM ++K ER D L+ D V Y ++N R + + A + +++G
Sbjct: 417 LIDSMGKFGREKEAMALFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKG 476
Query: 88 QKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAV 146
+A Y +++ G + E F + + K ++P++ Y VL++ L + G+ D+A
Sbjct: 477 IAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDAC 536
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
+ + ME G + Y L L K EEAL D + P ++ L
Sbjct: 537 ALYKRMEDDGCDQTVYTYTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGL 596
Query: 207 LDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKL 252
SG A I +++ M+ + G F++A KL
Sbjct: 597 CLSGKFSRACRILDELAPMGVIPETAHEDMINVLCKAGRFKQACKL 642
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 94/203 (46%), Gaps = 4/203 (1%)
Query: 59 VYNAVLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
Y V+ A C K +EG V +++ ++G +A Y +++ M G+ F +
Sbjct: 378 AYVLVIGALCKDGKPFEG-MAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFER 436
Query: 118 VQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
++ S + +++ Y V+VN L R GK DEAV+ + +GI +A Y L AG
Sbjct: 437 MKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGM 496
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNI 235
+++ +++ P Y LI SG + +A ++ +M+ + C + T I
Sbjct: 497 VDQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTI 556
Query: 236 MVKAYLEHGLFEEAMKLFQEMAE 258
++ + EEA+K + M +
Sbjct: 557 LIDGLFKEHKNEEALKFWDAMID 579
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 82/187 (43%), Gaps = 23/187 (12%)
Query: 6 DTVAYRSIAVTLGQAGHI---KELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNA 62
+ + Y S+ G+AG + KELF+ + K F PD YN
Sbjct: 480 NAIFYTSLIDGFGKAGMVDQSKELFE------EMIAKGFV------------PDSYCYNV 521
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKS 121
+++ + + + A + ++++ G + TY ++++ + K +F+ + K
Sbjct: 522 LIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLFKEHKNEEALKFWDAMIDKG 581
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
P A A++ L + L GK A ++++ G++ A + D+ LC AG+ ++A
Sbjct: 582 ITPTAAAFRTLASGLCLSGKFSRACRILDELAPMGVIPETA-HEDMINVLCKAGRFKQAC 640
Query: 182 MQMDKIC 188
D IC
Sbjct: 641 KLADGIC 647
>gi|428179078|gb|EKX47950.1| hypothetical protein GUITHDRAFT_136922 [Guillardia theta CCMP2712]
Length = 714
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/373 (21%), Positives = 146/373 (39%), Gaps = 76/373 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y ++ L + I+ +F ++ MR ++ PDIV +N L
Sbjct: 119 PDIVSYNTVLSALRHSPDIQNVFVMLKRMRE----------------KVSPDIVSFNTAL 162
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL-------------- 110
AC R+ WE +L+ + + + T+ ++ + CGKY+
Sbjct: 163 AACQRQCDWESGVAILEMMSEDQIERDVFTFSTLISLCDRCGKYDEAFALKEEMDAKNVS 222
Query: 111 --VYEF----------------FRKVQKSYI---------------PNALAYKVLVNTLW 137
+Y F RK Q + P+ + Y L+
Sbjct: 223 PNIYTFNALIAVCKNSLATSLMSRKRQNTLTIAQILFAEAKAAGLRPDIVTYNSLLGVYM 282
Query: 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV 197
GK E+ + ++E + ++ Y L K A+ +K+ + P V+
Sbjct: 283 EMGKWKESYDILFEIEDQHVITDVITYSTLISTFAKTRKYSLAIEMYEKMMERQVMPNVI 342
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+Y LI ACL + N A F+ M+ SPN+VT + M+ + + A LF EM
Sbjct: 343 TYNSLIFACLRANNFSQAFAFFDDMQAQGISPNVVTYSTMIASCRSKDNWVTAFDLFLEM 402
Query: 257 AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316
I +E + PD TF+ +L C K+W+ V + M G+ N + +
Sbjct: 403 ------IRKE------IPPDPMTFSALLSVCQHSKQWEQAMDVLEWMQDAGIQLNIRMYS 450
Query: 317 RMILDASRAGKVE 329
++ +AG+++
Sbjct: 451 AVVHVCGQAGRLD 463
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/321 (21%), Positives = 144/321 (44%), Gaps = 34/321 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR----------------SLPKKKFKTGTLER 48
PD V Y S+ + G KE +D++ + + K + + +E
Sbjct: 269 PDIVTYNSLLGVYMEMGKWKESYDILFEIEDQHVITDVITYSTLISTFAKTRKYSLAIEM 328
Query: 49 WDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
++ +E P+++ YN+++ AC+R + AF ++ QG P+ TY ++ +
Sbjct: 329 YEKMMERQVMPNVITYNSLIFACLRANNFSQAFAFFDDMQAQGISPNVVTYSTMIASCRS 388
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
+ ++ F + ++K P+ + + L++ + ++A+ +E M+ GI + +
Sbjct: 389 KDNWVTAFDLFLEMIRKEIPPDPMTFSALLSVCQHSKQWEQAMDVLEWMQDAGIQLNIRM 448
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + AG+ ++A +D+ + KP V+ +T LI AC + ++ A + MK
Sbjct: 449 YSAVVHVCGQAGRLDDAFRILDECKRDGIKPNVIMFTALIHACKVARDLDRAFRVLELMK 508
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ +PNLVT N+++ G + FQ + + +EY + ++ TFNT
Sbjct: 509 EDHVTPNLVTFNVLLGTCEVVG---NSTCAFQVVG-----LLQEYGFRA----NLQTFNT 556
Query: 283 MLDACAAEKRWDDLELVYKRM 303
++ C W VY +M
Sbjct: 557 LIKTCVRSHEWQKAFEVYSQM 577
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/279 (19%), Positives = 117/279 (41%), Gaps = 24/279 (8%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
+NA + A R W A +L +++ G +P +Y V+ + V+ ++++
Sbjct: 89 FNACIRALERMGDWREAVAILNIMEKDGVEPDIVSYNTVLSALRHSPDIQNVFVMLKRMR 148
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ P+ +++ + R+ + V+ +E M I + L GK +E
Sbjct: 149 EKVSPDIVSFNTALAACQRQCDWESGVAILEMMSEDQIERDVFTFSTLISLCDRCGKYDE 208
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDS-----------GNIQNAAYIFNQMKNF-CS 227
A +++ P + ++ LI C +S + A +F + K
Sbjct: 209 AFALKEEMDAKNVSPNIYTFNALIAVCKNSLATSLMSRKRQNTLTIAQILFAEAKAAGLR 268
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P++VT N ++ Y+E G ++E+ + E+ ED + VI D+ T++T++
Sbjct: 269 PDIVTYNSLLGVYMEMGKWKESYDILFEI-EDQH-----------VITDVITYSTLISTF 316
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
A +++ +Y++M+ + N + +I RA
Sbjct: 317 AKTRKYSLAIEMYEKMMERQVMPNVITYNSLIFACLRAN 355
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 12/146 (8%)
Query: 150 EDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS 209
E+ ERR I S+ + R L G EA+ ++ + K +P +VSY ++ A S
Sbjct: 75 EESERRKIKLSSLPFNACIRALERMGDWREAVAILNIMEKDGVEPDIVSYNTVLSALRHS 134
Query: 210 GNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
+IQN + +M+ SP++V+ N + A +E + + + M+ED I R
Sbjct: 135 PDIQNVFVMLKRMREKVSPDIVSFNTALAACQRQCDWESGVAILEMMSED--QIER---- 188
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWDD 295
D++TF+T++ C ++D+
Sbjct: 189 ------DVFTFSTLISLCDRCGKYDE 208
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/133 (19%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P + ++++ + G + DV+ MR KT + P + YN+++
Sbjct: 584 PSLSTFNALSMAAEEGGDWRRAIDVMVDMR------IKTEKILIRMAGHTPSVQAYNSLI 637
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ACV+ ++ AF V + +K G + + TY L++ ++ K + V + ++ Q+
Sbjct: 638 SACVKSSNYQKAFDVYKGMKTSGVRANIVTYNLIISILSGQRKLSEVLKVINEMKQEEVT 697
Query: 124 PNALAYKVLVNTL 136
P++ ++++ +
Sbjct: 698 PDSETIALMIDAV 710
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 12/149 (8%)
Query: 43 TGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
G L+ + R ++ +N ++ CVR +W+ AF V Q++ Q +PS +T+ +
Sbjct: 539 VGLLQEYGFR--ANLQTFNTLIKTCVRSHEWQKAFEVYSQMQLQRIRPSLSTFNALSMAA 596
Query: 103 LACGKY----NLVYEFFRKVQKSYI------PNALAYKVLVNTLWREGKTDEAVSAVEDM 152
G + +++ + K +K I P+ AY L++ + +A + M
Sbjct: 597 EEGGDWRRAIDVMVDMRIKTEKILIRMAGHTPSVQAYNSLISACVKSSNYQKAFDVYKGM 656
Query: 153 ERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+ G+ + Y + L K E L
Sbjct: 657 KTSGVRANIVTYNLIISILSGQRKLSEVL 685
>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
Length = 1603
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 138/341 (40%), Gaps = 42/341 (12%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M PD + Y S+ +AG++KE + +R + G L P ++ Y
Sbjct: 1254 MGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLR-------RAG--------LAPTVLTY 1298
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQ 119
N +++ R E A + +++ +QG P+ TY ++M+ L + EFF + +
Sbjct: 1299 NILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLS 1358
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K P+ AY + G A E + GI Y L LC G ++
Sbjct: 1359 KGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKD 1418
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A K+ +P ++YT LI A + G ++ A IFN M + P+ VT +++
Sbjct: 1419 AKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIH 1478
Query: 239 AYLEHGLFEEAMKLFQEMAED------------------------SNHINREYDKKGLVI 274
AY G A F++M E+ ++H E ++GLV
Sbjct: 1479 AYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLV- 1537
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
+ YT+ ++D W+D Y M +G+H + H
Sbjct: 1538 ANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTH 1578
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/307 (22%), Positives = 133/307 (43%), Gaps = 23/307 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK--PSATTYGLVMEVMLACGKYNL 110
+EP IV YN +L++ ++ + + +L++++ +G P+ TY +V+ + G
Sbjct: 1115 IEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEE 1174
Query: 111 VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
E ++ S ++ Y L+ L G + +ME GI+ + Y +
Sbjct: 1175 AAELVEGMRLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHG 1234
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPN 229
L +G E A ++ ++ + P V++Y L+ +GN++ A +F ++ +P
Sbjct: 1235 LLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPT 1294
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
++T NI++ Y G EEA L +EM E +P++ T+ ++
Sbjct: 1295 VLTYNILIDGYCRLGDLEEARILKEEMGEQG------------CLPNVCTYTILMKGSLN 1342
Query: 290 EKRWDDLELVYKRMLHHGLH-----FNAKRHLRMIL-DASRAGKVELLEITWEHLARADR 343
+ + ML GL +N + +IL D +RA EL E+ +D
Sbjct: 1343 VRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARA--FELREVLMLEGISSDT 1400
Query: 344 ITPPALI 350
+T LI
Sbjct: 1401 VTYNILI 1407
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 80/382 (20%), Positives = 145/382 (37%), Gaps = 68/382 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------SLPKKKFKTGTLER------WDPR 52
P+ V Y + L + G ++E ++++ MR S TG L R +D +
Sbjct: 1154 PNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKASSFTYNPLITGLLARGCVKKVYDLQ 1213
Query: 53 LE-------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
LE P +V YNA+++ ++ E A +++ G P TY ++
Sbjct: 1214 LEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKA 1273
Query: 106 GKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G F ++++ + P L Y +L++ R G +EA E+M +G + + Y
Sbjct: 1274 GNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTY 1333
Query: 165 YDLARC----------------LCSAGKCEEALMQMDKIC------KVAN---------- 192
L + + S G + +IC +A
Sbjct: 1334 TILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLML 1393
Query: 193 ---KPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEE 248
V+Y LI +GN+++A + +M N P+ +T ++ A+ E GL E
Sbjct: 1394 EGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLRE 1453
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
A K+F M D ++P TF ++ A +++ML G+
Sbjct: 1454 ARKIFNNMISDG------------LLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGV 1501
Query: 309 HFNAKRHLRMILDASRAGKVEL 330
N + +I R G+ +L
Sbjct: 1502 EPNEITYNVLIHALCRMGRTQL 1523
>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
Length = 1167
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 136/302 (45%), Gaps = 25/302 (8%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
+ V YN ++ R E AF + ++ G P TYG ++ + + N
Sbjct: 151 NTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALL 210
Query: 116 RKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
++ + + PN + Y L++ REG DEA +++M G+ + Y +L R LC
Sbjct: 211 DEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKM 270
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
G+ + A + + ++ + +++P ++Y +I+ N ++A + ++M+N SPN+ T
Sbjct: 271 GQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTY 330
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN------------RE---------YDK--K 270
+IM+ + G E+A L +EM N RE +DK K
Sbjct: 331 SIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTK 390
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
V+PD+Y +N+++ + R ++ + +M GL N + +I + G +E
Sbjct: 391 VNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLES 450
Query: 331 LE 332
E
Sbjct: 451 AE 452
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/367 (23%), Positives = 150/367 (40%), Gaps = 45/367 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKF----------KTGTLER---- 48
PD Y S+ L + G ++E M R L +F K G LE
Sbjct: 395 PDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQL 454
Query: 49 ----WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
D L+P+ V+Y +L + + E + + QG YG+++ + +
Sbjct: 455 VQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSS 514
Query: 105 CGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + +++K+ +P+ Y L++ L + ++A +++M ++G+ +
Sbjct: 515 SGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVC 574
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y L LC +G A + I P V+YT LI G+I NA Y++N+M
Sbjct: 575 YNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEML 634
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+P+ +++ G E+AM L +EM + I +FN
Sbjct: 635 ATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGH-------------ASISSFNN 681
Query: 283 MLDA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK--------VELLEI 333
++D C K + L+L++ ++ GL NA +I S AGK VEL +
Sbjct: 682 LVDGFCKRGKMQETLKLLHV-IMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQK 740
Query: 334 TWEHLAR 340
T E AR
Sbjct: 741 TSESAAR 747
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 86/359 (23%), Positives = 142/359 (39%), Gaps = 33/359 (9%)
Query: 3 SYPDT-VAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTG-----TLERWDPRLEPD 56
+YP V SI L +GH V+D + KK + L D L P
Sbjct: 24 AYPSPPVVLASIHRALSDSGHRSPA--VLDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPS 81
Query: 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR 116
I NA+L +R + V + + G P TY ++E +++ +
Sbjct: 82 IRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLV 141
Query: 117 KV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
++ ++ N + Y VL+ L R G +EA +DME G+V Y L LC +
Sbjct: 142 EMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSR 201
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCN 234
+ EA +D++ KP VV Y LI + GN A + +M PN +T +
Sbjct: 202 RSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYD 261
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHIN------------REYDKKGL---------- 272
+V+ + G + A L ++M DS+ + R ++KK
Sbjct: 262 NLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENA 321
Query: 273 -VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ P++YT++ M+ + + + M GL NA + +I R G V L
Sbjct: 322 GISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSL 380
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 128/302 (42%), Gaps = 26/302 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
P+ V Y ++ + G+ E F +I M +L + K G ++R
Sbjct: 220 PNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLL 279
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L+ PD + YN ++ R + AF +L +++ G P+ TY +++ +
Sbjct: 280 LKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQ 339
Query: 105 CGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ + ++ K PNA Y L++ REG A + M + ++
Sbjct: 340 SGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYC 399
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L L G+ EE+ ++ + P +Y+GLI L +G++++A + +M
Sbjct: 400 YNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRML 459
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI-NREYDKKGLVIPDIYTFN 281
+ PN V ++++Y + E+ F+ M + + NR Y G++I ++ +
Sbjct: 460 DTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIY---GILIHNLSSSG 516
Query: 282 TM 283
M
Sbjct: 517 NM 518
>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 126/278 (45%), Gaps = 14/278 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P V +N ++N ++ ++ + +G P+ TY ++ + GK +
Sbjct: 256 PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSL 315
Query: 115 F-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
R V +PN + Y L+N L ++G++ + V + +E RG + Y L L
Sbjct: 316 LDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFK 375
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVT 232
K EEA+ K+ + +P +V Y+ LI G + A I +M N C+PN T
Sbjct: 376 EEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFT 435
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+ ++K + + G ++A+++++EMA+++ +P+ ++ ++ + +
Sbjct: 436 YSSLIKGFFKTGNSQKAIRVWKEMAKNN------------CVPNEICYSVLIHGLCEDGK 483
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ +++ ML GL + + MI AG VE+
Sbjct: 484 LREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEV 521
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 104/193 (53%), Gaps = 4/193 (2%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+P+IVVY+A+++ R + + A +L ++ +G P+A TY +++ G
Sbjct: 395 QPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIR 454
Query: 114 FFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++++ K + +PN + Y VL++ L +GK EA+ M RG+ Y + LC
Sbjct: 455 VWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLC 514
Query: 173 SAGKCEEALMQMDK-ICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPN 229
+AG E L ++ +C+ ++ +P VV+Y L++A +I +A + N M + C+P+
Sbjct: 515 NAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPD 574
Query: 230 LVTCNIMVKAYLE 242
L+TCNI + A E
Sbjct: 575 LITCNIFLNALRE 587
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 109/231 (47%), Gaps = 16/231 (6%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKV 118
Y+ +++ + ++ E A + +++ ++G +P+ Y +++ + GK + E V
Sbjct: 366 YSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMV 425
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
K PNA Y L+ ++ G + +A+ ++M + V + Y L LC GK
Sbjct: 426 NKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLR 485
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM---KNFCSPNLVTCNI 235
EA+M + +P VV+Y+ +I ++G+++ +FN+M ++ P++VT NI
Sbjct: 486 EAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNI 545
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+++A + A+ L M + + PD+ T N L+A
Sbjct: 546 LLRALCKQNSISHAIDLLNSMLDRGCN------------PDLITCNIFLNA 584
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 132/304 (43%), Gaps = 22/304 (7%)
Query: 60 YNAVLNACVRRKQWEGA--FWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
+N+VLN ++ + A F+ + P+ ++ LV++ M G + E FR+
Sbjct: 154 FNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFRE 213
Query: 118 --VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
+QK P+ Y L++ L +E + DEAV +++M+ G S+ + L LC G
Sbjct: 214 MAIQKCE-PDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKG 272
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCN 234
+D + P V+Y +I G + A + ++M + C PN VT
Sbjct: 273 DMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYG 332
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
++ ++ G + + L + E +H N Y ++T++ E++ +
Sbjct: 333 TLINGLVKQGRSVDGVHLLSSLEERGHHANE------------YAYSTLISGLFKEEKSE 380
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARA---DRITPPALI 350
+ ++K+M+ G N + +I R GK+ E EI E + + + T +LI
Sbjct: 381 EAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLI 440
Query: 351 KERF 354
K F
Sbjct: 441 KGFF 444
>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 618
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 141/335 (42%), Gaps = 28/335 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L Q G++ + M + ++ +P ++ Y+ ++
Sbjct: 194 PNAVTYGTLIKGLCQTGNVNIALKLHKEMLN---------DASQYGVNCKPGVITYSIII 244
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + + A + +++K QG P +Y ++ GK++ F + V +
Sbjct: 245 DGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQ 304
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + VL++TL +EGK EA +E M +RGIV + Y L C G A
Sbjct: 305 PDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSAREL 364
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLE 242
+ +P +SYT LI + ++ A ++N+M SPN+ T ++K +
Sbjct: 365 FLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQ 424
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYK 301
G +A KLF M N + + LD C + ++ +EL +
Sbjct: 425 KGKVGDAKKLFGVMKTYGVSANSQ------------IYGIFLDGLCKNDCLFEAMEL-FN 471
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWE 336
+ + N + + +I +AGK LE WE
Sbjct: 472 ELKSYNFKLNIENYSCLIDGLCKAGK---LETAWE 503
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/314 (21%), Positives = 138/314 (43%), Gaps = 28/314 (8%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVN 134
AF + + P +++ ++ + Y+ ++ + +++ + + P+ +L N
Sbjct: 75 AFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILAN 134
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194
L + EA++A+ + RRG + + Y L + LC + EA ++ K+ P
Sbjct: 135 CLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTP 194
Query: 195 LVVSYTGLIQACLDSGNIQNAAYIFNQMKN-------FCSPNLVTCNIMVKAYLEHGLFE 247
V+Y LI+ +GN+ A + +M N C P ++T +I++ + G +
Sbjct: 195 NAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGRED 254
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
EA +LF+EM +IPD+ +++T++ +WD + ++ M+ G
Sbjct: 255 EAKELFEEMKAQG------------MIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQG 302
Query: 308 LHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPALIKERFCNRLENKDY 363
+ + +I + GKV +LLE+ + + IT +LI + FC D
Sbjct: 303 VQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLI-DGFCMV---GDL 358
Query: 364 GSAISCLVSHPVSG 377
SA +S P G
Sbjct: 359 NSARELFLSMPSKG 372
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 118/260 (45%), Gaps = 25/260 (9%)
Query: 5 PDTVAYRSIA---VTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
P+ + Y S+ +G +ELF S+P K LEPD + Y
Sbjct: 340 PNLITYNSLIDGFCMVGDLNSARELF------LSMPSKG------------LEPDEISYT 381
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
++N + + + A + ++ Q G+ P+ TTYG +++ + GK + F V K+
Sbjct: 382 TLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLF-GVMKT 440
Query: 122 Y--IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
Y N+ Y + ++ L + EA+ +++ + Y L LC AGK E
Sbjct: 441 YGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLET 500
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A +K+ + +P VV+Y +I G + NA +F +M +N C+P+++ N ++
Sbjct: 501 AWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLC 560
Query: 239 AYLEHGLFEEAMKLFQEMAE 258
+ E EE +KL +M +
Sbjct: 561 GFCEGNKLEEVIKLLHKMVQ 580
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 125/283 (44%), Gaps = 22/283 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V Y ++ + A + ++++ G P+A TYG +++ + G N+ +
Sbjct: 159 PNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKL 218
Query: 115 FRKVQK-------SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+++ + P + Y ++++ L + G+ DEA E+M+ +G++ Y L
Sbjct: 219 HKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTL 278
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
C AGK +++ D++ +P +V+++ LI G + A + M +
Sbjct: 279 IHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGI 338
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
PNL+T N ++ + G A +LF M KGL PD ++ T+++
Sbjct: 339 VPNLITYNSLIDGFCMVGDLNSARELFLSMPS-----------KGLE-PDEISYTTLING 386
Query: 287 -CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
C K + + L Y ML G N + ++ + GKV
Sbjct: 387 YCKTWKVKEAMNL-YNEMLQVGKSPNVTTYGTLLKGLFQKGKV 428
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/329 (19%), Positives = 133/329 (40%), Gaps = 42/329 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P + Y I L + G E ++ + M++ + PD++ Y+ ++
Sbjct: 235 PGVITYSIIIDGLCKVGREDEAKELFEEMKA---------------QGMIPDVISYSTLI 279
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKSYI 123
+ +W+ + + ++ QG +P T+ ++++ + GK + +Q+ +
Sbjct: 280 HGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIV 339
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L++ G + A M +G+ Y L C K +EA+
Sbjct: 340 PNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNL 399
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+++ +V P V +Y L++ G + +A +F MK + S N I + +
Sbjct: 400 YNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCK 459
Query: 243 HGLFEEAMKLFQEMAEDSNHINRE------------------------YDKKGLVIPDIY 278
+ EAM+LF E+ + +N E ++GL PD+
Sbjct: 460 NDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQ-PDVV 518
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHG 307
T+N M+ + D+ +++++M +G
Sbjct: 519 TYNIMIHGFCKVGQVDNANILFEKMEENG 547
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/333 (18%), Positives = 136/333 (40%), Gaps = 35/333 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P ++ + L + H +LF + + MR L PD+ + +
Sbjct: 89 PPISSFNRLLGGLAKINHYSQLFSLYNEMRL---------------AGLSPDLFTLSILA 133
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
N + A + + ++G P+ TY +++ + + + F ++QK
Sbjct: 134 NCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCT 193
Query: 124 PNALAYKVLVNTLWREGKTDEAV----SAVEDMERRGIVGSAAL--YYDLARCLCSAGKC 177
PNA+ Y L+ L + G + A+ + D + G+ + Y + LC G+
Sbjct: 194 PNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGRE 253
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIM 236
+EA +++ P V+SY+ LI +G + ++F++M + P++VT +++
Sbjct: 254 DEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVL 313
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ + G EA KL + M + ++P++ T+N+++D +
Sbjct: 314 IDTLCKEGKVTEAKKLLEVMIQRG------------IVPNLITYNSLIDGFCMVGDLNSA 361
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++ M GL + + +I + KV+
Sbjct: 362 RELFLSMPSKGLEPDEISYTTLINGYCKTWKVK 394
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD+V YN +++ + Q + A + +++++ G P Y ++ K V
Sbjct: 513 LQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVI 572
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAV 146
+ K VQK PNA + ++V+ L ++ K + V
Sbjct: 573 KLLHKMVQKDVSPNAASCTIVVDMLCKDEKYKKFV 607
>gi|145334827|ref|NP_001078759.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635742|sp|Q9LVD3.2|PP434_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g57250, mitochondrial; Flags: Precursor
gi|332009488|gb|AED96871.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 971
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 141/320 (44%), Gaps = 46/320 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKF---------------KTGTL--- 46
P+ V Y ++ L Q G + E+ D++ R L + F K G L
Sbjct: 205 PNLVTYTTLVSALCQLGKVDEVRDLV---RRLEDEGFEFDCVFYSNWIHGYFKGGALVDA 261
Query: 47 -----ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
E + + D+V Y+ +++ + E A +L ++ ++G +P+ TY ++
Sbjct: 262 LMQDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRG 321
Query: 102 MLACGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ GK + F ++ I + Y L++ + R+G + A S + DME+RGI S
Sbjct: 322 LCKMGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPS 381
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y + LC AG+ EA D++ K V++Y+ L+ + + NI I
Sbjct: 382 ILTYNTVINGLCMAGRVSEA----DEVSKGVVGD-VITYSTLLDSYIKVQNIDAVLEIRR 436
Query: 221 QMKNFCSP-NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
+ P +LV CNI++KA+L G + EA L++ M E + PD T
Sbjct: 437 RFLEAKIPMDLVMCNILLKAFLLMGAYGEADALYRAMPEMD------------LTPDTAT 484
Query: 280 FNTMLDA-CAAEKRWDDLEL 298
+ TM+ C + + LE+
Sbjct: 485 YATMIKGYCKTGQIEEALEM 504
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 114/267 (42%), Gaps = 43/267 (16%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P++V Y +++A + + + ++++L+ +G + Y N ++
Sbjct: 203 LVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYS------------NWIH 250
Query: 113 EFFRK-------------VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+F+ V+K + ++Y +L++ L +EG +EA+ + M + G+
Sbjct: 251 GYFKGGALVDALMQDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEP 310
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219
+ Y + R LC GK EEA + ++I V + Y LI GN+ A +
Sbjct: 311 NLITYTAIIRGLCKMGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSML 370
Query: 220 NQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
M + P+++T N ++ G EA ++ KG V+ D+
Sbjct: 371 GDMEQRGIQPSILTYNTVINGLCMAGRVSEADEV----------------SKG-VVGDVI 413
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLH 305
T++T+LD+ + D + + +R L
Sbjct: 414 TYSTLLDSYIKVQNIDAVLEIRRRFLE 440
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/230 (19%), Positives = 98/230 (42%), Gaps = 4/230 (1%)
Query: 29 VIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ 88
++D++RSL E + D++ Y ++N + A + K +G
Sbjct: 629 LVDNLRSLDAYLLVVNAGETTLSSM--DVIDYTIIINGLCKEGFLVKALNLCSFAKSRGV 686
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVS 147
+ TY ++ + G F ++ +P+ + Y +L++ L +EG +A
Sbjct: 687 TLNTITYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEK 746
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
++ M +G+V + +Y + C G+ E+A+ + + P + + +I+
Sbjct: 747 LLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYC 806
Query: 208 DSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
G+++ A +F + K+ S + ++K + G EEA L +EM
Sbjct: 807 KKGDMEEALSVFTEFKDKNISADFFGFLFLIKGFCTKGRMEEARGLLREM 856
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 13/181 (7%)
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N + Y L+N L ++G EA+ + +E G+V S Y L LC G +A +
Sbjct: 689 NTITYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLL 748
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCSPNLVTCNIMVKAYLEH 243
D + P ++ Y ++ G ++A + + +M +P+ T + M+K Y +
Sbjct: 749 DSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKK 808
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G EEA+ +F E +D N + D + F ++ + R ++ + + M
Sbjct: 809 GDMEEALSVFTEF-KDKN-----------ISADFFGFLFLIKGFCTKGRMEEARGLLREM 856
Query: 304 L 304
L
Sbjct: 857 L 857
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/176 (19%), Positives = 72/176 (40%), Gaps = 16/176 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+T+ Y S+ L Q G + E + DS+ ++ L P V Y +++
Sbjct: 689 NTITYNSLINGLCQQGCLVEALRLFDSLENIG---------------LVPSEVTYGILID 733
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEFFRKVQKSYIP 124
+ + A +L + +G P+ Y +++ G+ + + RK+ P
Sbjct: 734 NLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTP 793
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+A ++ ++G +EA+S + + + I + L + C+ G+ EEA
Sbjct: 794 DAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADFFGFLFLIKGFCTKGRMEEA 849
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/108 (19%), Positives = 52/108 (48%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ ++ D+V+ N +L A + + A + + + + P TY +++ G+
Sbjct: 440 EAKIPMDLVMCNILLKAFLLMGAYGEADALYRAMPEMDLTPDTATYATMIKGYCKTGQIE 499
Query: 110 LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
E F +++KS + A+ Y +++ L ++G D A + ++ +G+
Sbjct: 500 EALEMFNELRKSSVSAAVCYNRIIDALCKKGMLDTATEVLIELWEKGL 547
Score = 38.1 bits (87), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 50/248 (20%), Positives = 102/248 (41%), Gaps = 28/248 (11%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP-NALAYKVLVN 134
+ LQ L + G P+ + + + K+N + +F+ ++ I N Y ++
Sbjct: 10 GLFSLQSLLKSGFSPTLNSIDRFLRYLYRLQKFNCILQFYSQLDSKQININHRIYSIVSW 69
Query: 135 TLWREGKTDEA-------VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
+ ++A +S R ++ S + + R S G L+ D +
Sbjct: 70 AFLNLNRYEDAEKFINIHISKASIFPRTHMLDSLIHGFSITRDDPSKG----LLILRDCL 125
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSP--NLVTCNIMVKAYLEH 243
P +++ LI ++ G + NA + M KN P N V C+ ++ + +
Sbjct: 126 RNHGAFPSSLTFCSLIYRFVEKGEMDNAIEVLEMMTNKNVNYPFDNFV-CSAVISGFCKI 184
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G E A+ F E A DS G+++P++ T+ T++ A + D++ + +R+
Sbjct: 185 GKPELALGFF-ESAVDS----------GVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRL 233
Query: 304 LHHGLHFN 311
G F+
Sbjct: 234 EDEGFEFD 241
>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
and contains a RepB PF|01051 protein and multiple PPR
PF|01535 repeats [Arabidopsis thaliana]
Length = 613
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 131/290 (45%), Gaps = 14/290 (4%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD+ Y V+N +R + A +L+++++ + Y +++ + N
Sbjct: 201 QPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALN 260
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F ++ I PN + Y L+ L G+ +A + DM R I + + L
Sbjct: 261 LFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFV 320
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
GK EA D++ K + P + +Y+ LI + A ++F M C PN+V
Sbjct: 321 KEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVV 380
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++K + + EE M+LF+EM++ +GLV + T+NT++
Sbjct: 381 TYNTLIKGFCKAKRVEEGMELFREMSQ-----------RGLV-GNTVTYNTLIQGLFQAG 428
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
D + ++K+M+ G+ + + ++ + GK+E + +E+L ++
Sbjct: 429 DCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 478
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 120/262 (45%), Gaps = 20/262 (7%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN-- 109
R+ D+ YN ++N RR Q A VL ++ + G +P T ++ + +
Sbjct: 94 RISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEA 153
Query: 110 --LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
LV + F Y PN + + L++ L+ K EAV+ ++ M RG Y +
Sbjct: 154 VALVDQMF---VMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTV 210
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FC 226
LC G + AL + K+ K + VV YT +I A + N+ +A +F +M N
Sbjct: 211 VNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGI 270
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
PN+VT N +++ +G + +A +L +M E IN P++ TF+ ++DA
Sbjct: 271 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE--RKIN----------PNVVTFSALIDA 318
Query: 287 CAAEKRWDDLELVYKRMLHHGL 308
E + + E +Y M+ +
Sbjct: 319 FVKEGKLVEAEKLYDEMIKRSI 340
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/338 (21%), Positives = 146/338 (43%), Gaps = 41/338 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y S+ L G + ++ M +ER ++ P++V ++A++
Sbjct: 272 PNVVTYNSLIRCLCNYGRWSDASRLLSDM------------IER---KINPNVVTFSALI 316
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNLVYEFFRKVQ 119
+A V+ + A + ++ ++ P TY G M L K+ ++E +
Sbjct: 317 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH--MFELM--IS 372
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K PN + Y L+ + + +E + +M +RG+VG+ Y L + L AG C+
Sbjct: 373 KDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDM 432
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A K+ P +++Y+ L+ G ++ A +F + K+ P++ T NIM++
Sbjct: 433 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIE 492
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G E+ LF ++ KG V P++ + TM+ + ++ +
Sbjct: 493 GMCKAGKVEDGWDLFCSLS-----------LKG-VKPNVIIYTTMISGFCRKGLKEEADA 540
Query: 299 VYKRMLHHGLHFNAKRHLRMI----LDASRAGKVELLE 332
+++ M G N+ + +I D +A EL++
Sbjct: 541 LFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIK 578
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 101/207 (48%), Gaps = 8/207 (3%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V YN ++ + K+ E + +++ Q+G + TY +++ + G ++ +
Sbjct: 377 PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI 436
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F+K V P+ + Y +L++ L + GK ++A+ E +++ + Y + +C
Sbjct: 437 FKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCK 496
Query: 174 AGKCEEALMQMDKICKVA---NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PN 229
AGK E+ D C ++ KP V+ YT +I G + A +F +MK + PN
Sbjct: 497 AGKVEDG---WDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPN 553
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEM 256
T N +++A L G + +L +EM
Sbjct: 554 SGTYNTLIRARLRDGDKAASAELIKEM 580
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/222 (18%), Positives = 93/222 (41%), Gaps = 16/222 (7%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ V Y ++ +A ++E ++ R + ++ T V YN +
Sbjct: 376 FPNVVTYNTLIKGFCKAKRVEEGMELF---REMSQRGLVGNT------------VTYNTL 420
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
+ + + A + +++ G P TY ++++ + GK F +QKS +
Sbjct: 421 IQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM 480
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ Y +++ + + GK ++ + +G+ + +Y + C G EEA
Sbjct: 481 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADA 540
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
++ + P +Y LI+A L G+ +A + +M++
Sbjct: 541 LFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRS 582
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 76/181 (41%), Gaps = 17/181 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y + L + G +++ V + ++ ++EPDI YN ++
Sbjct: 447 PDIITYSILLDGLCKYGKLEKALVVFEYLQK---------------SKMEPDIYTYNIMI 491
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ + E + + L +G KP+ Y ++ G FR++++ +
Sbjct: 492 EGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTL 551
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN+ Y L+ R+G + +++M G VG A+ + L G+ E++ ++
Sbjct: 552 PNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINML-HDGRLEKSYLE 610
Query: 184 M 184
M
Sbjct: 611 M 611
>gi|255661004|gb|ACU25671.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 369
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 134/282 (47%), Gaps = 17/282 (6%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
++ PD VVYNA+LN R + E F + + + ++G++ S ++ ++ V+ GK
Sbjct: 20 KVSPDAVVYNAMLNGFYRAGRIEDCFELWEMMGREGRR-SVASFNTMIRVLFDNGKVEEA 78
Query: 112 YEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ KS ++ ++ Y LVN + ++++ +E E++G V A Y +
Sbjct: 79 MSIRELMAKSGFVEDSKTYGTLVNGFCKNRYINKSLQVLEIAEQKGGVLDAFAYSAMINA 138
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PN 229
LC K E+A+ ++ + K KP Y LI+ + + + +A +F++M S P+
Sbjct: 139 LCKEAKLEKAVCVLNGMIKSGCKPNTCVYNALIKGLVGASKLDDAIRVFHEMGTTHSPPD 198
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CA 288
+VT NI++ + F EA L +EM E KGL P + T++ ++ C
Sbjct: 199 IVTYNILINGLFKGDRFGEAYDLVKEMLE-----------KGL-DPSVITYSLLMKGLCL 246
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+K L+L + ++ G + + H +I GK +L
Sbjct: 247 GDKVEMALQL-WNQVTKKGFKPDVQMHNILIHGLCSVGKTQL 287
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 14/242 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D Y+A++NA + + E A VL + + G KP+ Y +++ ++ K + F
Sbjct: 128 DAFAYSAMINALCKEAKLEKAVCVLNGMIKSGCKPNTCVYNALIKGLVGASKLDDAIRVF 187
Query: 116 RKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
++ ++ P + + Y +L+N L++ + EA V++M +G+ S Y L + LC
Sbjct: 188 HEMGTTHSPPDIVTYNILINGLFKGDRFGEAYDLVKEMLEKGLDPSVITYSLLMKGLCLG 247
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
K E AL +++ K KP V + LI G Q A ++ M + C+PNLVT
Sbjct: 248 DKVEMALQLWNQVTKKGFKPDVQMHNILIHGLCSVGKTQLALSLYLDMNRWNCAPNLVTQ 307
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N +++ + + G A+ ++ + + + PDI ++N L + R
Sbjct: 308 NTLMQGFYKDGNIRNALVIWARILRNE------------LQPDIISYNITLKGLCSCNRI 355
Query: 294 DD 295
D
Sbjct: 356 SD 357
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 89/187 (47%), Gaps = 37/187 (19%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDIV YN ++N + ++ A+ +++++ ++G PS TY L+M+ + K + +
Sbjct: 197 PDIVTYNILINGLFKGDRFGEAYDLVKEMLEKGLDPSVITYSLLMKGLCLGDKVEMALQL 256
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ +V +K + P+ + +L++ L GKT A+S LY D+ R C+
Sbjct: 257 WNQVTKKGFKPDVQMHNILIHGLCSVGKTQLALS---------------LYLDMNRWNCA 301
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVT 232
P +V+ L+Q GNI+NA I+ + ++N P++++
Sbjct: 302 --------------------PNLVTQNTLMQGFYKDGNIRNALVIWARILRNELQPDIIS 341
Query: 233 CNIMVKA 239
NI +K
Sbjct: 342 YNITLKG 348
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/181 (18%), Positives = 74/181 (40%), Gaps = 16/181 (8%)
Query: 3 SYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNA 62
S PD V Y + L + E +D++ M LE+ L+P ++ Y+
Sbjct: 195 SPPDIVTYNILINGLFKGDRFGEAYDLVKEM------------LEKG---LDPSVITYSL 239
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-S 121
++ + E A + Q+ ++G KP + +++ + + GK L + + + +
Sbjct: 240 LMKGLCLGDKVEMALQLWNQVTKKGFKPDVQMHNILIHGLCSVGKTQLALSLYLDMNRWN 299
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
PN + L+ +++G A+ + R + Y + LCS + +A+
Sbjct: 300 CAPNLVTQNTLMQGFYKDGNIRNALVIWARILRNELQPDIISYNITLKGLCSCNRISDAI 359
Query: 182 M 182
+
Sbjct: 360 L 360
>gi|357463931|ref|XP_003602247.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491295|gb|AES72498.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 704
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 138/344 (40%), Gaps = 70/344 (20%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P I NAVL A R+ ++ + + + Q G P+ TY L+ + L C K + E
Sbjct: 133 PTIFTINAVLFALFRQSRYSDLLSLHRFITQAGVVPNIITYNLIFQTYLDCRKPDTALEN 192
Query: 115 FRKVQKS--YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL----A 168
F++ K + P+ +++L+ L + D A+ + M G +Y+ L A
Sbjct: 193 FKQFIKDAPFNPSPTTFRILIKGLVDNNRLDRAMDIKDQMNASGFAPDPLVYHYLMLGHA 252
Query: 169 R-----------------------------CLCSA----GKCEEALMQMDKICKVANKPL 195
R CL G +EA+ ++ K
Sbjct: 253 RSSDGDGVLRVYEELKEKLGGVVEDGVVLGCLMKGYFLKGMEKEAMECYQEVFVEGKKMS 312
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP------NLVTCNIMVKAYLEHGLFEEA 249
++Y ++ A +G A +F++M +P NL + N+MV Y G F+EA
Sbjct: 313 DIAYNSVLDALAKNGKFDEAMRLFDRMIKEHNPPAKLAVNLGSFNVMVDGYCAEGKFKEA 372
Query: 250 MKLFQEMAE------------------------DSNHINREYDKKGLVIPDIYTFNTMLD 285
+++F+ M E ++ + E + KG V PD YT+ ++D
Sbjct: 373 IEVFRSMGESRCKPDTLSFNNLIEQLCNNGMILEAEEVYGEMEGKG-VNPDEYTYGLLMD 431
Query: 286 ACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
C E R DD +K+M+ GL N + R++ + GK++
Sbjct: 432 TCFKENRPDDAASYFKKMVESGLRPNLAVYNRLVDGLVKVGKID 475
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/209 (19%), Positives = 94/209 (44%), Gaps = 6/209 (2%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSA-----TTYGLVMEVMLACGKYNLVY 112
+ YN+VL+A + +++ A + ++ ++ P+ ++ ++++ A GK+
Sbjct: 314 IAYNSVLDALAKNGKFDEAMRLFDRMIKEHNPPAKLAVNLGSFNVMVDGYCAEGKFKEAI 373
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E FR + +S P+ L++ L+ L G EA +ME +G+ Y L
Sbjct: 374 EVFRSMGESRCKPDTLSFNNLIEQLCNNGMILEAEEVYGEMEGKGVNPDEYTYGLLMDTC 433
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV 231
+ ++A K+ + +P + Y L+ + G I +A + F+ M ++
Sbjct: 434 FKENRPDDAASYFKKMVESGLRPNLAVYNRLVDGLVKVGKIDDAKFFFDLMVKKLKMDVA 493
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
+ M+K E G ++ +++ + +D+
Sbjct: 494 SYQFMMKVLSEAGRLDDVLQIVNMLLDDN 522
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 21 GHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVL 80
G KE +V SM + R +PD + +N ++ A V
Sbjct: 367 GKFKEAIEVFRSM---------------GESRCKPDTLSFNNLIEQLCNNGMILEAEEVY 411
Query: 81 QQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWRE 139
+++ +G P TYGL+M+ + + +F+K+ +S + PN Y LV+ L +
Sbjct: 412 GEMEGKGVNPDEYTYGLLMDTCFKENRPDDAASYFKKMVESGLRPNLAVYNRLVDGLVKV 471
Query: 140 GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
GK D+A + M ++ + A Y + + L AG+ ++ L
Sbjct: 472 GKIDDAKFFFDLMVKK-LKMDVASYQFMMKVLSEAGRLDDVL 512
>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 806
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 141/325 (43%), Gaps = 34/325 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLER---WDPRLE----PDI 57
PD V + ++ L I E + M +TG LE +D +E P +
Sbjct: 174 PDVVTFNTLLHGLCLEDRISEALALFGYM-------VETGFLEAVALFDQMVEIGLTPVV 226
Query: 58 VVYNAVLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR 116
+ +N ++N C+ + E A V ++ +G TYG ++ M G
Sbjct: 227 ITFNTLINGLCLEGRVLEAAALV-NKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLS 285
Query: 117 KVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
K+++++I P+ + Y +++ L ++G +A +M +GI + Y + CS G
Sbjct: 286 KMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFG 345
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCN 234
+ +A + + + P V+++ LI A + G + A + ++M + C P+ VT N
Sbjct: 346 RWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYN 405
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
M+ + +H F++A +F MA PD+ TFNT++D KR D
Sbjct: 406 SMIYGFCKHNRFDDAKHMFDLMAS----------------PDVVTFNTIIDVYCRAKRVD 449
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMI 319
+ + + + GL N + +I
Sbjct: 450 EGMQLLREISRRGLVANTTTYNTLI 474
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 129/299 (43%), Gaps = 32/299 (10%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+PD+V +N +L+ + A + + + G + + ++E+ L
Sbjct: 172 FQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLT-------- 223
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
P + + L+N L EG+ EA + V M +G+ Y + +C
Sbjct: 224 -----------PVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMC 272
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
G + AL + K+ + KP VV Y+ +I G+ +A Y+F++M + +PN+
Sbjct: 273 KMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVF 332
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N M+ + G + +A +L ++M E RE + PD+ TFN ++ A E
Sbjct: 333 TYNCMIDGFCSFGRWSDAQRLLRDMIE------REIN------PDVLTFNALISASVKEG 380
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
+ + E + MLH + + + MI + + + + ++ +A D +T +I
Sbjct: 381 KLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTII 439
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/380 (18%), Positives = 156/380 (41%), Gaps = 71/380 (18%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V Y +I + + G K +++ M + ++PD+V+Y+A+++
Sbjct: 260 DVVTYGTIVNGMCKMGDTKSALNLLSKME---------------ETHIKPDVVIYSAIID 304
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIP 124
+ A ++ ++ ++G P+ TY +++ + G+++ R +++ P
Sbjct: 305 RLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINP 364
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY------------YDLARCL- 171
+ L + L++ +EGK EA ++M R I Y +D A+ +
Sbjct: 365 DVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMF 424
Query: 172 ------------------CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQ 213
C A + +E + + +I + +Y LI + N+
Sbjct: 425 DLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLN 484
Query: 214 NAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ--EMAE-DSNHINREYDK 269
A +F +M + P+ +TCNI++ + E+ EEA++LF+ +M++ D + +
Sbjct: 485 AAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIII 544
Query: 270 KGL--------------------VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH 309
G+ V PD+ T+N M+ + D +++ +M +G
Sbjct: 545 HGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHE 604
Query: 310 FNAKRHLRMILDASRAGKVE 329
+ + +I +AG+++
Sbjct: 605 PDNSTYNTLIRGCLKAGEID 624
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/257 (18%), Positives = 96/257 (37%), Gaps = 55/257 (21%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PDTV Y S+ + + + D M S PD+V +N +
Sbjct: 398 FPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS-------------------PDVVTFNTI 438
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN-------------- 109
++ R K+ + +L+++ ++G + TTY ++ N
Sbjct: 439 IDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 498
Query: 110 ---------LVY------------EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVS 147
L+Y E F +Q S I + +AY ++++ + + K DEA
Sbjct: 499 CPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWD 558
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
+ G+ Y + C +A + K+ ++P +Y LI+ CL
Sbjct: 559 LFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCL 618
Query: 208 DSGNIQNAAYIFNQMKN 224
+G I + + ++M++
Sbjct: 619 KAGEIDKSIELISEMRS 635
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 92/235 (39%), Gaps = 36/235 (15%)
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA 191
++ R + D A+S ME R I + + L +C C K +L K+ K+
Sbjct: 112 VIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLG 171
Query: 192 NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMK 251
+P VV++ L+ I A +F M +E G F EA+
Sbjct: 172 FQPDVVTFNTLLHGLCLEDRISEALALFGYM------------------VETG-FLEAVA 212
Query: 252 LFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
LF +M E GL P + TFNT+++ E R + + +M+ GLH +
Sbjct: 213 LFDQMVE-----------IGLT-PVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHID 260
Query: 312 AKRHLRMILDASRAGKVE----LLEITWEHLARADRITPPALIKERFCNRLENKD 362
+ ++ + G + LL E + D + A+I +R C + D
Sbjct: 261 VVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAII-DRLCKDGHHSD 314
>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 666
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 141/325 (43%), Gaps = 34/325 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLER---WDPRLE----PDI 57
PD V + ++ L I E + M +TG LE +D +E P +
Sbjct: 174 PDVVTFNTLLHGLCLEDRISEALALFGYM-------VETGFLEAVALFDQMVEIGLTPVV 226
Query: 58 VVYNAVLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR 116
+ +N ++N C+ + E A V ++ +G TYG ++ M G
Sbjct: 227 ITFNTLINGLCLEGRVLEAAALV-NKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLS 285
Query: 117 KVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
K+++++I P+ + Y +++ L ++G +A +M +GI + Y + CS G
Sbjct: 286 KMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFG 345
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCN 234
+ +A + + + P V+++ LI A + G + A + ++M + C P+ VT N
Sbjct: 346 RWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYN 405
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
M+ + +H F++A +F MA PD+ TFNT++D KR D
Sbjct: 406 SMIYGFCKHNRFDDAKHMFDLMAS----------------PDVVTFNTIIDVYCRAKRVD 449
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMI 319
+ + + + GL N + +I
Sbjct: 450 EGMQLLREISRRGLVANTTTYNTLI 474
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 129/299 (43%), Gaps = 32/299 (10%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+PD+V +N +L+ + A + + + G + + ++E+ L
Sbjct: 172 FQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLT-------- 223
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
P + + L+N L EG+ EA + V M +G+ Y + +C
Sbjct: 224 -----------PVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMC 272
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
G + AL + K+ + KP VV Y+ +I G+ +A Y+F++M + +PN+
Sbjct: 273 KMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVF 332
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N M+ + G + +A +L ++M E RE + PD+ TFN ++ A E
Sbjct: 333 TYNCMIDGFCSFGRWSDAQRLLRDMIE------REIN------PDVLTFNALISASVKEG 380
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
+ + E + MLH + + + MI + + + + ++ +A D +T +I
Sbjct: 381 KLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTII 439
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 70/382 (18%), Positives = 157/382 (41%), Gaps = 71/382 (18%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+ D V Y +I + + G K +++ M + ++PD+V+Y+A+
Sbjct: 258 HIDVVTYGTIVNGMCKMGDTKSALNLLSKME---------------ETHIKPDVVIYSAI 302
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSY 122
++ + A ++ ++ ++G P+ TY +++ + G+++ R +++
Sbjct: 303 IDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREI 362
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY------------YDLARC 170
P+ L + L++ +EGK EA ++M R I Y +D A+
Sbjct: 363 NPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKH 422
Query: 171 L-------------------CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
+ C A + +E + + +I + +Y LI + N
Sbjct: 423 MFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDN 482
Query: 212 IQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ--EMAE-DSNHINREY 267
+ A +F +M + P+ +TCNI++ + E+ EEA++LF+ +M++ D + +
Sbjct: 483 LNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNI 542
Query: 268 DKKGL--------------------VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
G+ V PD+ T+N M+ + D +++ +M +G
Sbjct: 543 IIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNG 602
Query: 308 LHFNAKRHLRMILDASRAGKVE 329
+ + +I +AG+++
Sbjct: 603 HEPDNSTYNTLIRGCLKAGEID 624
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/257 (18%), Positives = 96/257 (37%), Gaps = 55/257 (21%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PDTV Y S+ + + + D M S PD+V +N +
Sbjct: 398 FPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS-------------------PDVVTFNTI 438
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN-------------- 109
++ R K+ + +L+++ ++G + TTY ++ N
Sbjct: 439 IDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 498
Query: 110 ---------LVY------------EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVS 147
L+Y E F +Q S I + +AY ++++ + + K DEA
Sbjct: 499 CPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWD 558
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
+ G+ Y + C +A + K+ ++P +Y LI+ CL
Sbjct: 559 LFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCL 618
Query: 208 DSGNIQNAAYIFNQMKN 224
+G I + + ++M++
Sbjct: 619 KAGEIDKSIELISEMRS 635
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 92/235 (39%), Gaps = 36/235 (15%)
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA 191
++ R + D A+S ME R I + + L +C C K +L K+ K+
Sbjct: 112 VIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLG 171
Query: 192 NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMK 251
+P VV++ L+ I A +F M +E G F EA+
Sbjct: 172 FQPDVVTFNTLLHGLCLEDRISEALALFGYM------------------VETG-FLEAVA 212
Query: 252 LFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
LF +M E GL P + TFNT+++ E R + + +M+ GLH +
Sbjct: 213 LFDQMVE-----------IGLT-PVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHID 260
Query: 312 AKRHLRMILDASRAGKVE----LLEITWEHLARADRITPPALIKERFCNRLENKD 362
+ ++ + G + LL E + D + A+I +R C + D
Sbjct: 261 VVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAII-DRLCKDGHHSD 314
>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62930, chloroplastic; Flags: Precursor
gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 131/290 (45%), Gaps = 14/290 (4%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD+ Y V+N +R + A +L+++++ + Y +++ + N
Sbjct: 217 QPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALN 276
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F ++ I PN + Y L+ L G+ +A + DM R I + + L
Sbjct: 277 LFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFV 336
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
GK EA D++ K + P + +Y+ LI + A ++F M C PN+V
Sbjct: 337 KEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVV 396
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++K + + EE M+LF+EM++ +GLV + T+NT++
Sbjct: 397 TYNTLIKGFCKAKRVEEGMELFREMSQ-----------RGLV-GNTVTYNTLIQGLFQAG 444
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
D + ++K+M+ G+ + + ++ + GK+E + +E+L ++
Sbjct: 445 DCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 494
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 120/262 (45%), Gaps = 20/262 (7%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN-- 109
R+ D+ YN ++N RR Q A VL ++ + G +P T ++ + +
Sbjct: 110 RISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEA 169
Query: 110 --LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
LV + F Y PN + + L++ L+ K EAV+ ++ M RG Y +
Sbjct: 170 VALVDQMF---VMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTV 226
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FC 226
LC G + AL + K+ K + VV YT +I A + N+ +A +F +M N
Sbjct: 227 VNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGI 286
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
PN+VT N +++ +G + +A +L +M E IN P++ TF+ ++DA
Sbjct: 287 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE--RKIN----------PNVVTFSALIDA 334
Query: 287 CAAEKRWDDLELVYKRMLHHGL 308
E + + E +Y M+ +
Sbjct: 335 FVKEGKLVEAEKLYDEMIKRSI 356
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/338 (21%), Positives = 146/338 (43%), Gaps = 41/338 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y S+ L G + ++ M +ER ++ P++V ++A++
Sbjct: 288 PNVVTYNSLIRCLCNYGRWSDASRLLSDM------------IER---KINPNVVTFSALI 332
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNLVYEFFRKVQ 119
+A V+ + A + ++ ++ P TY G M L K+ ++E +
Sbjct: 333 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH--MFELM--IS 388
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K PN + Y L+ + + +E + +M +RG+VG+ Y L + L AG C+
Sbjct: 389 KDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDM 448
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A K+ P +++Y+ L+ G ++ A +F + K+ P++ T NIM++
Sbjct: 449 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIE 508
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G E+ LF ++ KG V P++ + TM+ + ++ +
Sbjct: 509 GMCKAGKVEDGWDLFCSLS-----------LKG-VKPNVIIYTTMISGFCRKGLKEEADA 556
Query: 299 VYKRMLHHGLHFNAKRHLRMI----LDASRAGKVELLE 332
+++ M G N+ + +I D +A EL++
Sbjct: 557 LFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIK 594
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 101/207 (48%), Gaps = 8/207 (3%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V YN ++ + K+ E + +++ Q+G + TY +++ + G ++ +
Sbjct: 393 PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI 452
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F+K V P+ + Y +L++ L + GK ++A+ E +++ + Y + +C
Sbjct: 453 FKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCK 512
Query: 174 AGKCEEALMQMDKICKVA---NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
AGK E+ D C ++ KP V+ YT +I G + A +F +MK + PN
Sbjct: 513 AGKVEDG---WDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPN 569
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEM 256
T N +++A L G + +L +EM
Sbjct: 570 SGTYNTLIRARLRDGDKAASAELIKEM 596
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/222 (18%), Positives = 93/222 (41%), Gaps = 16/222 (7%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ V Y ++ +A ++E ++ R + ++ T V YN +
Sbjct: 392 FPNVVTYNTLIKGFCKAKRVEEGMELF---REMSQRGLVGNT------------VTYNTL 436
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
+ + + A + +++ G P TY ++++ + GK F +QKS +
Sbjct: 437 IQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM 496
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ Y +++ + + GK ++ + +G+ + +Y + C G EEA
Sbjct: 497 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADA 556
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
++ + P +Y LI+A L G+ +A + +M++
Sbjct: 557 LFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRS 598
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 76/181 (41%), Gaps = 17/181 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y + L + G +++ V + ++ ++EPDI YN ++
Sbjct: 463 PDIITYSILLDGLCKYGKLEKALVVFEYLQK---------------SKMEPDIYTYNIMI 507
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ + E + + L +G KP+ Y ++ G FR++++ +
Sbjct: 508 EGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTL 567
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN+ Y L+ R+G + +++M G VG A+ + L G+ E++ ++
Sbjct: 568 PNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINML-HDGRLEKSYLE 626
Query: 184 M 184
M
Sbjct: 627 M 627
>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 545
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 137/335 (40%), Gaps = 52/335 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + G + D+++ M LE + PDI Y ++
Sbjct: 231 PDVVTYSILVSGFCIVGQLNRAIDLLNEM-----------VLEN----INPDIYTYTILV 275
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE-------FFRK 117
+A + + + A VL + + Y +M+ Y LV E F+
Sbjct: 276 DALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMD------GYCLVNEVNNAKRVFYTM 329
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
Q P+ Y +++N L + + DEA++ E++ ++ +V Y L CLC +G+
Sbjct: 330 TQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRI 389
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIM 236
D++ P V++Y LI A +G++ A +FN+MK+ PN+ T I+
Sbjct: 390 SYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTIL 449
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHIN-REYD-------KKGLV--------------- 273
+ + G + A++ FQ++ +N R Y K+GL+
Sbjct: 450 LDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGC 509
Query: 274 IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
I D TF M+ A + D E + + M+ GL
Sbjct: 510 ISDAVTFEIMIRAFFDKDENDKAEKLVREMIARGL 544
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/321 (21%), Positives = 136/321 (42%), Gaps = 51/321 (15%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
+ERW R P++V+Y+ +++ + + A+ + ++ +G P TY +++
Sbjct: 189 IERWSIR--PNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIV 246
Query: 106 GKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEA------------------- 145
G+ N + + V ++ P+ Y +LV+ L +EGK EA
Sbjct: 247 GQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVY 306
Query: 146 ---------VSAVED-------MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK 189
V+ V + M + G+ Y + LC + +EAL ++I +
Sbjct: 307 STLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQ 366
Query: 190 VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NLVTCNIMVKAYLEHGLFEE 248
P V+YT LI SG I +F++M + P +++T N ++ A ++G +
Sbjct: 367 KNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDR 426
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
A+ LF +M + + + P++YTF +LD R + ++ +L G
Sbjct: 427 AIALFNKMKDQA------------IRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGY 474
Query: 309 HFNAKRHLRMILDASRAGKVE 329
N + + MI + G ++
Sbjct: 475 CLNVRTYTVMINGLCKEGLLD 495
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 14/252 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P +N +L + V K++ A + +Q++ +P T +++ G+ L +
Sbjct: 56 PHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFSG 115
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y PN + L+ L EGK EA+ + + +G S Y L +C
Sbjct: 116 VSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCK 175
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+ A+ + +I + + +P VV Y+ +I + A ++ +M SP++VT
Sbjct: 176 IGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVT 235
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+I+V + G A+ L EM ++ IN PDIYT+ ++DA E +
Sbjct: 236 YSILVSGFCIVGQLNRAIDLLNEMVLEN--IN----------PDIYTYTILVDALCKEGK 283
Query: 293 WDDLELVYKRML 304
+ E V M+
Sbjct: 284 VKEAENVLAVMV 295
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/299 (18%), Positives = 128/299 (42%), Gaps = 16/299 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+P+ + N ++ + + A ++ QG + S +YG+++ + G+
Sbjct: 125 QPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIR 184
Query: 114 FFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R++++ S PN + Y ++++ L ++ DEA +M +GI Y L C
Sbjct: 185 LLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFC 244
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLV 231
G+ A+ ++++ P + +YT L+ A G ++ A + M C + ++V
Sbjct: 245 IVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVV 304
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
+ ++ Y A ++F M + V PD++ ++ M++ K
Sbjct: 305 VYSTLMDGYCLVNEVNNAKRVFYTMTQMG------------VTPDVHCYSIMINGLCKIK 352
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
R D+ +++ + + + + +I ++G++ + ++ + DR PP +I
Sbjct: 353 RVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEM--LDRGQPPDVI 409
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 81/190 (42%), Gaps = 51/190 (26%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV Y S+ L ++G I ++D+ D M L+R P PD++ YN ++
Sbjct: 371 PDTVTYTSLIDCLCKSGRISYVWDLFDEM------------LDRGQP---PDVITYNNLI 415
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSY- 122
+A + + A + ++K Q +P+ T+ ++++ + G+ EFF+ + K Y
Sbjct: 416 DALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYC 475
Query: 123 ----------------------------------IPNALAYKVLVNTLWREGKTDEAVSA 148
I +A+ +++++ + + + D+A
Sbjct: 476 LNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKL 535
Query: 149 VEDMERRGIV 158
V +M RG++
Sbjct: 536 VREMIARGLL 545
>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
Length = 722
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 129/306 (42%), Gaps = 29/306 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y + + G ++E +V+D M L + V YN ++
Sbjct: 422 PNVITYTILIDRFCKEGRLEEARNVLDEMSG---------------KGLALNAVGYNCLI 466
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+A + ++ + A + + +G KP T+ ++ + K+ ++ + + I
Sbjct: 467 SALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVI 526
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + Y L++ R G EA+ V DM RG Y L + LC AG E+ L
Sbjct: 527 ANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLAL 586
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMKNFCSPNLVTCNIMVKAYLE 242
+ + P +S LI +GNIQ+A ++ + + +P++VT N ++ +
Sbjct: 587 FEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCK 646
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +EA+ LF ++ + + PD T+NT++ E +DD L+ R
Sbjct: 647 TGRAQEALNLFDKLQVEG------------ICPDAITYNTLISWHCKEGMFDDAHLLLSR 694
Query: 303 MLHHGL 308
+ G
Sbjct: 695 GVDSGF 700
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 83/395 (21%), Positives = 151/395 (38%), Gaps = 98/395 (24%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP YN VL+ + + V ++ +G P+ T+G+VM+ + + +
Sbjct: 179 EPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACA 238
Query: 114 FFRKVQK-SYIPNALAYKVLVNTLWREGKTD----------------------------- 143
+ + + +PNA+ Y+ L++ L + G+ +
Sbjct: 239 LLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLC 298
Query: 144 ------EAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI---------- 187
EA V+ M RG ++ Y L LC GK +EA M ++K+
Sbjct: 299 KMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNT 358
Query: 188 ----------------------CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-N 224
V P + +Y LI G + +A + N+M+
Sbjct: 359 LINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIK 418
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA------------------------EDS 260
C PN++T I++ + + G EEA + EM+ +D+
Sbjct: 419 GCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDA 478
Query: 261 NHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMIL 320
++ + KG PDI+TFN+++ ++++ +Y+ ML G+ N + +I
Sbjct: 479 LNMFGDMSSKG-CKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIH 537
Query: 321 DASRAGKV-ELLEITWEHLARA---DRITPPALIK 351
R G + E L++ + L R D IT LIK
Sbjct: 538 AFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIK 572
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 121/291 (41%), Gaps = 49/291 (16%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDI YN ++ ++ A ++ +++ +G +P+ TY ++++ G+
Sbjct: 387 PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 446
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ K NA+ Y L++ L ++ K +A++ DM +G + L LC
Sbjct: 447 LDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCK 506
Query: 174 AGKCEEAL----------------------------MQMDKICKVANKPLV-------VS 198
K EEAL M + K+ N L ++
Sbjct: 507 VNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDIT 566
Query: 199 YTGLIQACLDSGNIQNAAYIF-NQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y GLI+A +GNI+ +F + M +PN ++CNI++ G + A++ ++M
Sbjct: 567 YNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMI 626
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+GL PDI T+N++++ R + ++ ++ G+
Sbjct: 627 H-----------RGLT-PDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGI 665
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 122/312 (39%), Gaps = 52/312 (16%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+ +N ++ + + A ++ ++ +G P++ TYG++M + GK +
Sbjct: 285 PDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARML 344
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEA----------------------------- 145
KV PN + + L+N G+ DEA
Sbjct: 345 LNKVPN---PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCK 401
Query: 146 ----VSAVE---DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
VSA E +M+ +G + Y L C G+ EEA +D++ V
Sbjct: 402 KGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVG 461
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y LI A +Q+A +F M + C P++ T N ++ + FEEA+ L+Q+M
Sbjct: 462 YNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML 521
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
+ VI + T+NT++ A + + ML G + +
Sbjct: 522 LEG------------VIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNG 569
Query: 318 MILDASRAGKVE 329
+I RAG +E
Sbjct: 570 LIKALCRAGNIE 581
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 124/284 (43%), Gaps = 34/284 (11%)
Query: 89 KPSATTYGLVMEVMLA--CGKY--NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDE 144
+P+ +Y +V++V+LA C K N+ YE + K P + V++ L + D
Sbjct: 179 EPTFRSYNVVLDVLLAGNCPKVVPNVFYEM---LSKGISPTVYTFGVVMKALCLVNEVDS 235
Query: 145 AVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204
A + ++DM R G V +A +Y L L G+ E L ++++ + P V ++ I
Sbjct: 236 ACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIH 295
Query: 205 ACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNH 262
I AA + ++M + F +PN T +++ G +EA L ++
Sbjct: 296 GLCKMLRIHEAAKLVDRMLLRGF-TPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN---- 350
Query: 263 INREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV-YKRMLHHGLHFNAKRHLRMILD 321
P++ FNT+++ + R D+ + V ++ ML G + + +IL
Sbjct: 351 ------------PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILG 398
Query: 322 ASRAGKV----ELLEITWEHLARADRITPPALIKERFC--NRLE 359
+ G + EL+ + IT LI +RFC RLE
Sbjct: 399 LCKKGYLVSARELMNEMQIKGCEPNVITYTILI-DRFCKEGRLE 441
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 21/156 (13%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLER----- 48
D + Y + L +AG+I++ + + M S L +TG ++
Sbjct: 563 DDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFL 622
Query: 49 ---WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
L PDIV YN+++N + + + A + +L+ +G P A TY ++
Sbjct: 623 RDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKE 682
Query: 106 GKYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREG 140
G ++ + R V +IPN + + +LV+ +EG
Sbjct: 683 GMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEG 718
>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
Length = 812
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 132/307 (42%), Gaps = 25/307 (8%)
Query: 33 MRSLPKKKFKTGTLERWDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ 88
M L K+ L+ +D L+ P++ +Y +L++ + + A +L +K +G
Sbjct: 214 MDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGC 273
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNAL-AYKVLVNTLWREGKTDEAVS 147
P TY + + G+ N ++ +Q L Y L++ L++ + DE
Sbjct: 274 LPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFG 333
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
+ M R I LY + R AG+ E+AL +D + K P Y +++
Sbjct: 334 YYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLC 393
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
D G+++ A + ++M +N + T IM+ + GL +EAM++F EM E
Sbjct: 394 DHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCD---- 449
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHF--NAKRHLRMILDASR 324
P + T+N ++D E R ++ RML H + N LR+ L A++
Sbjct: 450 --------PTVMTYNALIDGFYREGRLEE-----ARMLFHKMEMGNNPSLFLRLTLGANQ 496
Query: 325 AGKVELL 331
E L
Sbjct: 497 VCDSESL 503
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 109/291 (37%), Gaps = 49/291 (16%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYIPNALAYKVLVN 134
A ++ + +P+A Y +++ ++ G L + R V PN Y VL++
Sbjct: 156 AVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMD 215
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194
L ++G +A+ ++M RGI+ + +Y L LC+AGK +EA+ + + P
Sbjct: 216 GLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLP 275
Query: 195 LVVSYTGLIQACLDSGNIQNA------------------------------------AYI 218
V+Y + G + A Y
Sbjct: 276 DEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYY 335
Query: 219 FNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
++ SP++V IM++ E G E+A+ M KKG V PD +
Sbjct: 336 KTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVM-----------KKKGFV-PDTF 383
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+NT+L + + ML + L ++ MI + G V+
Sbjct: 384 CYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVD 434
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/354 (18%), Positives = 139/354 (39%), Gaps = 77/354 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y + +L AG I E ++ SM+ D PD V YNA L
Sbjct: 240 PNVKIYTVLLSSLCNAGKIDEAVQLLGSMK---------------DKGCLPDEVTYNAFL 284
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + AF L L+ G Y +++ + +++ + +++ ++++
Sbjct: 285 SGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNIS 344
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY----------DLARC--- 170
P+ + Y +++ G+ ++A+S ++ M+++G V Y DL R
Sbjct: 345 PDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTL 404
Query: 171 ----------------------LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
LC G +EA+ D++ + P V++Y LI
Sbjct: 405 RSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYR 464
Query: 209 SGNIQNAAYIFNQMKNFCSPNLV---------TCNI-----MVKAYLEHGLFEEAMKLFQ 254
G ++ A +F++M+ +P+L C+ +V + G +A KL +
Sbjct: 465 EGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLR 524
Query: 255 EMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+ + V+PD+ T+NT+++ + D ++K + G+
Sbjct: 525 SIIDSG------------VVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGI 566
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 81/160 (50%), Gaps = 15/160 (9%)
Query: 143 DEAV-SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
DEA+ A+ D G+ S++ + L SAG+ +A+ ++ + ++P Y
Sbjct: 118 DEAMFDALADARAAGLPASSSAFAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAFVYNT 177
Query: 202 LIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
+++A +DSG I A ++N+M C+PN T N+++ + G+ +A+K+F EM +
Sbjct: 178 ILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRG 237
Query: 261 NHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELV 299
++P++ + +L + C A K + ++L+
Sbjct: 238 ------------IMPNVKIYTVLLSSLCNAGKIDEAVQLL 265
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D + PD+V YN ++N + + +GA + ++L+ +G P TYG +++ +L + N
Sbjct: 528 DSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHREN 587
Query: 110 LVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVS 147
F+ + Q P+ Y ++ +L R K +A++
Sbjct: 588 DAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAIN 626
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 57/288 (19%), Positives = 111/288 (38%), Gaps = 43/288 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKF---------------KTGTLERW 49
PD V Y + +AG I++ +D M+ KK F G LER
Sbjct: 345 PDVVLYTIMIRGCAEAGRIEDALSFLDVMK---KKGFVPDTFCYNTVLKVLCDHGDLERA 401
Query: 50 DPRLEPDIVVYNAVLNACV---------RRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
L +++ N VL++ +R + A + ++ + G P+ TY +++
Sbjct: 402 HT-LRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALID 460
Query: 101 VMLACGKYNLVYEFFRKVQKSYIPNAL--------------AYKVLVNTLWREGKTDEAV 146
G+ F K++ P+ + + LV+ + + G+ +A
Sbjct: 461 GFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAY 520
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
+ + G+V Y L LC A + A+ ++ P ++Y LI
Sbjct: 521 KLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGL 580
Query: 207 LDSGNIQNAAYIF-NQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253
L + +A +F N +++ SP+L N M+++ +A+ L+
Sbjct: 581 LRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLW 628
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 14/154 (9%)
Query: 178 EEALMQMDKICKVANKPLVVS-YTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNI 235
+EA+ + A P S + L+ A +G +A F++M F S P N
Sbjct: 118 DEAMFDALADARAAGLPASSSAFAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAFVYNT 177
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
++KA ++ G+ A+ L+ M NR T+N ++D + D
Sbjct: 178 ILKALVDSGVILLALALYNRMVAAGCAPNRA------------TYNVLMDGLCKQGMAGD 225
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++ ML G+ N K + ++ AGK++
Sbjct: 226 ALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKID 259
>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1151
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/351 (22%), Positives = 147/351 (41%), Gaps = 34/351 (9%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKF----------KTGTLER 48
M PD VAY ++ + I F V + M R + F K G LE+
Sbjct: 331 MGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEK 390
Query: 49 WDP--------RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
+ ++PDI YN ++ + + E A+ +L ++K++ +A G ++
Sbjct: 391 AEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVN 450
Query: 101 VMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+ CG E F++ + PN + Y +V L +EG+ +EA+ + M+ +G+
Sbjct: 451 GLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSP 510
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219
Y + C AGK EE + ++ KP V +Y I +G +Q A F
Sbjct: 511 DVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSF 570
Query: 220 NQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
+M + +PN V C ++ Y + G +A F+ M + V+PD+
Sbjct: 571 IEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQG------------VLPDVQ 618
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
T + ++ + + + V+ +L GL + + +I + + G ++
Sbjct: 619 THSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLK 669
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 80/350 (22%), Positives = 134/350 (38%), Gaps = 70/350 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y +I L + G +E ++ M+ D L PD+ YN V+
Sbjct: 475 PNIVIYTTIVKGLVKEGRFEEAIKILGVMK---------------DQGLSPDVFCYNTVI 519
Query: 65 -NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM-------EVMLA------------ 104
C K EG ++++ + +G KP+ TYG + E+ A
Sbjct: 520 IGFCKAGKMEEGKSYLVEMI-AKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGI 578
Query: 105 --------------CGKYNLVYEF--FR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVS 147
C N F FR + + +P+ + VL++ L + GK EA+
Sbjct: 579 APNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMG 638
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
++ +G+V Y L LC G + A D +CK P +V+Y LI
Sbjct: 639 VFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLC 698
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
G I A +F+ + + + N VT + ++ Y + EA +LF M
Sbjct: 699 KLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGM---------- 748
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL----HFNA 312
K V PD + + ++D C + ++ M+ G+ FNA
Sbjct: 749 --KLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNA 796
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/302 (20%), Positives = 121/302 (40%), Gaps = 16/302 (5%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D + PD+ ++ +++ + + + A V +L +G P TY ++ + G
Sbjct: 610 DQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLK 669
Query: 110 LVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
+E + K I PN + Y L+N L + G+ +A + + +G+ ++ Y +
Sbjct: 670 AAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTII 729
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP 228
C + EA + V P Y LI C +GN + A +F M
Sbjct: 730 AGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIA 789
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
+ N ++ + + G EA +L ++M + NHI P+ T+ +++
Sbjct: 790 STPAFNALIDGFFKLGKLIEAYQLVEDMVD--NHIT----------PNHVTYTILIEYHC 837
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG-KVELLEITWEHLARADRITPP 347
+ E ++ M + N + ++ +R G + E+ + E +AR I P
Sbjct: 838 TVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARG--IKPD 895
Query: 348 AL 349
L
Sbjct: 896 DL 897
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/312 (21%), Positives = 123/312 (39%), Gaps = 49/312 (15%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+ Y ++NA R + E VL ++++G P+ TY +V+ + G + E
Sbjct: 230 PDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALEL 289
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI---------------- 157
R + K +P+ Y L++ R+ ++ E S +++M G+
Sbjct: 290 KRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVK 349
Query: 158 ---VGSA----------------ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
+G A YY L LC G E+A ++ + KP + +
Sbjct: 350 QSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQT 409
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y LI+ N++ A + ++K + N C +V G A +LFQEM
Sbjct: 410 YNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMI 469
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
+ P+I + T++ E R+++ + M GL + +
Sbjct: 470 SWG------------LKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNT 517
Query: 318 MILDASRAGKVE 329
+I+ +AGK+E
Sbjct: 518 VIIGFCKAGKME 529
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 117/295 (39%), Gaps = 51/295 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y S+ L + G +K F++ D M K G + P+IV YNA++
Sbjct: 650 PDVFTYTSLISNLCKEGDLKAAFELHDDM-------CKKG--------INPNIVTYNALI 694
Query: 65 NACVR-------RKQWEG----------------------------AFWVLQQLKQQGQK 89
N + R+ ++G AF + +K G
Sbjct: 695 NGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVP 754
Query: 90 PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAV 149
P + Y +++ G F + + I + A+ L++ ++ GK EA V
Sbjct: 755 PDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALIDGFFKLGKLIEAYQLV 814
Query: 150 EDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS 209
EDM I + Y L C+ G +EA ++ K P V++YT L+
Sbjct: 815 EDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRI 874
Query: 210 GNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
G +F++M P+ + ++MV A+L+ G + +A+KL +M + ++
Sbjct: 875 GRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNV 929
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 84/212 (39%), Gaps = 14/212 (6%)
Query: 77 FWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL-VYEFFRKVQKSYIPNALAYKVLVNT 135
FW + + P TY ++ GK + F +K IPN + Y V++
Sbjct: 217 FWKVYKGMLGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAG 276
Query: 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL 195
L R G DEA+ M +G++ +Y L C + E +D++ + KP
Sbjct: 277 LCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPD 336
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
V+YT LI + +I A + +M N T ++ + G E+A LF
Sbjct: 337 HVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFS 396
Query: 255 EMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
EM + PDI T+N +++
Sbjct: 397 EMTMMG------------IKPDIQTYNCLIEG 416
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/273 (20%), Positives = 113/273 (41%), Gaps = 21/273 (7%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMR--SLPKKKF----------KTGTLER----W 49
++V Y +I ++ ++ E F + M+ +P F K G E+ +
Sbjct: 721 NSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLF 780
Query: 50 DPRLEPDIV---VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
+E I +NA+++ + + A+ +++ + P+ TY +++E G
Sbjct: 781 LGMVEEGIASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVG 840
Query: 107 KYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ F ++QK + +PN L Y L++ R G+ E S ++M RGI +
Sbjct: 841 NIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWS 900
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+ G +AL +D + YT LI A N+ + ++++
Sbjct: 901 VMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQ 960
Query: 226 CSP-NLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
S +L TC +V + G +EA+++ + M
Sbjct: 961 GSKLSLATCGTLVCCFHRAGRTDEALRVLESMV 993
Score = 38.1 bits (87), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 31/167 (18%), Positives = 74/167 (44%), Gaps = 9/167 (5%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
+E + P+++ Y ++L+ R + F + ++ +G KP + ++++ L
Sbjct: 850 MEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKE 909
Query: 106 GKYNLVYEFFRKVQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G + + + + Y +L++ L + E + ++++E++G S A
Sbjct: 910 GNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATC 969
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
L C AG+ +EAL ++ +V S+ L++ + +GN
Sbjct: 970 GTLVCCFHRAGRTDEALRVLE--------SMVRSFLNLLEFSVRNGN 1008
>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
Length = 730
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 130/291 (44%), Gaps = 21/291 (7%)
Query: 48 RWDPRLEPDIVVYNAVLNACV-------RRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
R D L+P++V YNAV++AC R + + ++ +G + TY +++
Sbjct: 161 RGDSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGIEQDIFTYNTLLD 220
Query: 101 VMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+ G+ +L ++ ++ + +I PN + Y +++ + G+ DEA++ +M+ I
Sbjct: 221 AVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGL 280
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219
Y L G+ EEAL ++ K V+Y L+ G + +F
Sbjct: 281 DRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVF 340
Query: 220 NQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
+MK PNL+T + ++ Y + GL++EAM++F RE+ K GL D+
Sbjct: 341 EEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVF-----------REFKKAGLK-ADVV 388
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++ ++DA + M G+ N + +I R+G VE
Sbjct: 389 LYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVE 439
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 139/318 (43%), Gaps = 57/318 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ +AG + E ++ + M KF + L+R V YN +L
Sbjct: 245 PNVVTYSTVIDGYAKAGRLDEALNLFNEM------KFASIGLDR---------VSYNTLL 289
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + ++E A V ++++ G K A TY ++ GKY V F +++ I
Sbjct: 290 SIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIF 349
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN L Y L++ + G EA+ + ++ G+ LY L LC G E A+
Sbjct: 350 PNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSF 409
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNA--AYIFNQMKNFCSPNLVTCNIMVKAYL 241
+D++ K +P VV+Y +I A SG +++A + + ++ N
Sbjct: 410 LDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDATESEVGDKEDN----------------- 452
Query: 242 EHGLFEEAMKLFQEM-AEDSNHINREYDKKGLVI---------------PDIYTFNTMLD 285
+ +K+F ++ AE + H +E + ++ P++ TF+ +L+
Sbjct: 453 ------QIIKIFGQLAAEKTCHAKKENRGRQEILCILAVFHKMHELDIKPNVVTFSAILN 506
Query: 286 ACAAEKRWDDLELVYKRM 303
AC+ ++D ++ + +
Sbjct: 507 ACSRCNSFEDASMLLEEL 524
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 37/184 (20%)
Query: 5 PDTVAYRSIAVTLGQAG----------------HIKELFDVIDSMRSLPKKKFKTGTLE- 47
P+ V Y SI G++G I ++F + + ++ KK G E
Sbjct: 420 PNVVTYNSIIDAFGRSGIVEDATESEVGDKEDNQIIKIFGQLAAEKTCHAKKENRGRQEI 479
Query: 48 ---------RWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLV 98
+ ++P++V ++A+LNAC R +E A +L++L+ + +GL+
Sbjct: 480 LCILAVFHKMHELDIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLL 539
Query: 99 MEVMLACGKYNLVY----EFFRKVQKSYIPNALA-YKVLVNTLWREGKTDEAVSAVEDME 153
M G + V+ F +V++ A A Y L + LW G+ A V + +
Sbjct: 540 M------GYGDNVWVQAQSLFDEVKQMDSSTASAFYNALTDMLWHFGQRRGAQLVVLEGK 593
Query: 154 RRGI 157
RR +
Sbjct: 594 RRHV 597
>gi|242039157|ref|XP_002466973.1| hypothetical protein SORBIDRAFT_01g017690 [Sorghum bicolor]
gi|241920827|gb|EER93971.1| hypothetical protein SORBIDRAFT_01g017690 [Sorghum bicolor]
Length = 504
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 108/241 (44%), Gaps = 14/241 (5%)
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVS 147
+P + ++ +L +Y+L+ K + + Y P+ L Y V++ + GK D+
Sbjct: 246 RPFRNAFNAILHTLLTIEQYSLIEWVHEKMILEGYSPDVLTYNVVMRAKYMLGKLDQFHR 305
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
+++M R G+ Y L L K AL ++ + V P V+ +T LI
Sbjct: 306 LLDEMGRDGLTPDLHTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPNVLHFTNLIDGLG 365
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
+GN++ Y F++M K C P++V +M+ +Y+ G FEEA + F +M
Sbjct: 366 RAGNLEACKYFFDEMIKKGCDPDVVCYTVMISSYVAAGEFEEAQRFFDDMLLRGQ----- 420
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+P++YT+N+M+ +D + K M HG N + ++ AG
Sbjct: 421 -------LPNVYTYNSMIRGLCTVGEFDKAFAMLKDMDSHGCTPNFSVYSSLVSRLRSAG 473
Query: 327 K 327
K
Sbjct: 474 K 474
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 75/173 (43%), Gaps = 1/173 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD+ YN +L+ + + A +L + G P+ + +++ + G
Sbjct: 315 LTPDLHTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPNVLHFTNLIDGLGRAGNLEACK 374
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
FF + ++K P+ + Y V++++ G+ +EA +DM RG + + Y + R L
Sbjct: 375 YFFDEMIKKGCDPDVVCYTVMISSYVAAGEFEEAQRFFDDMLLRGQLPNVYTYNSMIRGL 434
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
C+ G+ ++A + + P Y+ L+ +G A + M +
Sbjct: 435 CTVGEFDKAFAMLKDMDSHGCTPNFSVYSSLVSRLRSAGKDTQANNVIKYMTD 487
>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Vitis vinifera]
Length = 644
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 141/328 (42%), Gaps = 29/328 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y ++ L + I E ++D M+ G P V +N ++
Sbjct: 205 PDVFTYCTLMDGLCKEDRIDEAVLLLDEMQI-------EGCF--------PSSVTFNVLI 249
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYI 123
N ++ ++ + +G P+ TY ++ + GK + R V +
Sbjct: 250 NGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCV 309
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L+N L ++G++ + V + +E RG + Y L L K EEA+
Sbjct: 310 PNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGL 369
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
K+ + +P +V Y+ LI G + A I +M N C+PN T + ++K + +
Sbjct: 370 WKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFK 429
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G ++A+++++EMA+++ +P+ ++ ++ + + + +++
Sbjct: 430 TGNSQKAIRVWKEMAKNN------------CVPNEICYSVLIHGLCEDGKLREAMMMWTH 477
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVEL 330
ML GL + + MI AG VE+
Sbjct: 478 MLGRGLRPDVVAYSSMIHGLCNAGSVEV 505
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 104/193 (53%), Gaps = 4/193 (2%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+P+IVVY+A+++ R + + A +L ++ +G P+A TY +++ G
Sbjct: 379 QPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIR 438
Query: 114 FFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++++ K + +PN + Y VL++ L +GK EA+ M RG+ Y + LC
Sbjct: 439 VWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLC 498
Query: 173 SAGKCEEALMQMDK-ICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPN 229
+AG E L ++ +C+ ++ +P VV+Y L++A +I +A + N M + C+P+
Sbjct: 499 NAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPD 558
Query: 230 LVTCNIMVKAYLE 242
L+TCNI + A E
Sbjct: 559 LITCNIFLNALRE 571
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 109/231 (47%), Gaps = 16/231 (6%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKV 118
Y+ +++ + ++ E A + +++ ++G +P+ Y +++ + GK + E V
Sbjct: 350 YSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMV 409
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
K PNA Y L+ ++ G + +A+ ++M + V + Y L LC GK
Sbjct: 410 NKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLR 469
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM---KNFCSPNLVTCNI 235
EA+M + +P VV+Y+ +I ++G+++ +FN+M ++ P++VT NI
Sbjct: 470 EAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNI 529
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+++A + A+ L M + + PD+ T N L+A
Sbjct: 530 LLRALCKQNSISHAIDLLNSMLDRGCN------------PDLITCNIFLNA 568
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 132/304 (43%), Gaps = 22/304 (7%)
Query: 60 YNAVLNACVRRKQWEGA--FWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
+N+VLN ++ + A F+ + P+ ++ LV++ M G + E FR+
Sbjct: 138 FNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFRE 197
Query: 118 --VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
+QK P+ Y L++ L +E + DEAV +++M+ G S+ + L LC G
Sbjct: 198 MAIQKCE-PDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKG 256
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCN 234
+D + P V+Y +I G + A + ++M + C PN VT
Sbjct: 257 DMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYG 316
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
++ ++ G + + L + E +H N Y ++T++ E++ +
Sbjct: 317 TLINGLVKQGRSVDGVHLLSSLEERGHHANE------------YAYSTLISGLFKEEKSE 364
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARA---DRITPPALI 350
+ ++K+M+ G N + +I R GK+ E EI E + + + T +LI
Sbjct: 365 EAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLI 424
Query: 351 KERF 354
K F
Sbjct: 425 KGFF 428
>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 627
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 131/303 (43%), Gaps = 25/303 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK--PSATTYGLVMEVMLACGKYNLVY 112
PD+ YN +LN + + A +L + G P +Y V+ G +
Sbjct: 49 PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLD--- 105
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ + + PN + Y ++ L + D+A+ + M + G++ Y + C
Sbjct: 106 ---KMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFC 162
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
S+G+ +EA++ + K+ +P VV+Y L+ +G A IF+ M K P++
Sbjct: 163 SSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDIT 222
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T +++ Y G E L M + H P+ Y F+ ++ A A ++
Sbjct: 223 TYGTLLQGYATKGALVEMHGLLDLMVRNGIH------------PNHYVFSILVCAYAKQE 270
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA----RADRITPP 347
+ ++ LV+ +M GL+ NA + +I ++G+VE + +E + R D I
Sbjct: 271 KVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYN 330
Query: 348 ALI 350
+LI
Sbjct: 331 SLI 333
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 124/271 (45%), Gaps = 15/271 (5%)
Query: 41 FKTGTLERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM 99
FK G L++ D R+ P++V YN+++ A + + + A VL + + G P TY ++
Sbjct: 99 FKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIV 158
Query: 100 EVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ G+ F +K++ + P+ + Y L++ L + G+ EA + M +RG+
Sbjct: 159 HGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLK 218
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
Y L + + G E +D + + P ++ L+ A ++ A +
Sbjct: 219 PDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLV 278
Query: 219 FNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI 277
F++M+ +PN VT ++ + G E+AM F++M ++ + PD
Sbjct: 279 FSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEG------------LRPDS 326
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+N+++ + +W+ E ++ ML G+
Sbjct: 327 IVYNSLIHSLCIFDKWEKAEELFLEMLDRGI 357
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 114/256 (44%), Gaps = 19/256 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y SI +G KE + MRS +EPD+V YN+++
Sbjct: 149 PDCMTYNSIVHGFCSSGQPKEAIVFLKKMRS---------------DGVEPDVVTYNSLM 193
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + A + + ++G KP TTYG +++ G ++ + ++ I
Sbjct: 194 DYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 253
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + +LV ++ K +EA+ M ++G+ +A Y + LC +G+ E+A++
Sbjct: 254 PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLY 313
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
+++ +P + Y LI + + A +F +M + C + N ++ ++
Sbjct: 314 FEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFF-NSIIDSHC 372
Query: 242 EHGLFEEAMKLFQEMA 257
+ G E+ KLF M
Sbjct: 373 KEGRVIESGKLFDLMV 388
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 77/347 (22%), Positives = 145/347 (41%), Gaps = 55/347 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTLERWDPR---------- 52
PD V Y S+ L + G E + DSM R L GTL +
Sbjct: 184 PDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGL 243
Query: 53 --------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ P+ V++ ++ A ++++ E A V +++QQG P+A TYG V++V+
Sbjct: 244 LDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCK 303
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ +F + + + P+++ Y L+++L K ++A +M RGI S
Sbjct: 304 SGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIF 363
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLI-QACLDSGNIQNAAYIFNQM 222
+ + C G+ E+ D + ++ KP +++ + A D N +IF M
Sbjct: 364 FNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRFLGSARRDYSLFVNIYFIFTNM 423
Query: 223 KNFC---------------------SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSN 261
N P L T NI++ ++ L ++A+++FQ +
Sbjct: 424 SNTGDKEKETPVNTNGGNTASNSSGGPFLGTYNIILHGLCKNKLTDDALRMFQNLC---- 479
Query: 262 HINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
++ + + + TFN M+DA R D+ + ++ +GL
Sbjct: 480 LMDLKLEAR--------TFNIMIDALLKVGRNDEAKDLFVAFSSNGL 518
>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 521
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 101/218 (46%), Gaps = 4/218 (1%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK-PSATTYGLVMEVMLACGKYNL 110
++ P+ ++N ++ + E A V+ ++K+ + P+ TY +++ + G+
Sbjct: 194 KVRPNTCIFNILVKHHCKSGDLESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKE 253
Query: 111 VYEFFRKV--QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
E F ++ + +P+AL Y VL+ GK D A +E M G + Y L
Sbjct: 254 AIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLM 313
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CS 227
C G+ EEA D++ KP V YT LI G I A + +M C
Sbjct: 314 NGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMKCK 373
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
+ VT N+++K G F+EA+++ + +A + ++N+
Sbjct: 374 ADAVTFNVLLKGLCREGRFDEALRMLENLAYEGVYLNK 411
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 123/278 (44%), Gaps = 24/278 (8%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGA----FWVLQQLKQQGQKPSATTYGLVMEVMLACGK 107
R +P + + LN V KQ + A +V + LK +P+ + ++++ G
Sbjct: 158 REKPSLKAISTCLNILVESKQIDLAQKCLLYVNEHLKV---RPNTCIFNILVKHHCKSGD 214
Query: 108 YNLVYEFFRKVQKSY--IPNALAYKVLVNTLWREGKTDEAVSAVEDM-ERRGIVGSAALY 164
E +++KS PN + Y L++ L G+ EA+ E+M + I+ A Y
Sbjct: 215 LESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILPDALTY 274
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
L + C GK + A M+ + P V +Y+ L+ G ++ A +F++MK+
Sbjct: 275 SVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKS 334
Query: 225 F-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
P+ V ++ + G +EAM+L +EM E D TFN +
Sbjct: 335 SGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMK------------CKADAVTFNVL 382
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILD 321
L E R+D+ + + + + G++ N K R++L+
Sbjct: 383 LKGLCREGRFDEALRMLENLAYEGVYLN-KGSYRIVLN 419
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 99/236 (41%), Gaps = 22/236 (9%)
Query: 3 SYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRS-------------LPKKKFKTGTLERW 49
SYP+ + Y ++ L G +KE ++ + M S L K G +R
Sbjct: 231 SYPNVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRA 290
Query: 50 DPRLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
+E P++ Y+ ++N + + E A V ++K G KP Y ++
Sbjct: 291 RKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINC 350
Query: 102 MLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
G+ + E +++ + +A+ + VL+ L REG+ DEA+ +E++ G+ +
Sbjct: 351 FCGVGRIDEAMELLKEMTEMKCKADAVTFNVLLKGLCREGRFDEALRMLENLAYEGVYLN 410
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
Y + LC G+ E++ + + P + L+ ++G + NA
Sbjct: 411 KGSYRIVLNFLCQKGELEKSCALLGLMLSRGFVPHYATSNELLVCLCEAGMVDNAV 466
>gi|147846788|emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
Length = 733
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/353 (22%), Positives = 150/353 (42%), Gaps = 63/353 (17%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V Y +I + + G + + ++++ M F G + PD+V Y +V+N
Sbjct: 344 DKVGYSAIVHSFCREGRMDKAKEIVNEM-------FSKGCI--------PDVVTYTSVIN 388
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-IP 124
+ ++ + A +L+Q+ + G KP+ +Y ++ + G E ++ + IP
Sbjct: 389 GLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEXWWIP 448
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
NA+ Y VL++ REGK+ EA V +M ++G + L + LC K +EA
Sbjct: 449 NAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEA---- 504
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHG 244
++ CL++G C+ N+V ++ + +
Sbjct: 505 ---------------KRFMEQCLNNG---------------CAVNVVNFTTVIHGFCQKD 534
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
E A+ L +M + H PD+ T+ T++DA + R ++ + +ML
Sbjct: 535 DLEAALSLLDDMYLSNKH------------PDVVTYTTIIDALGKKGRIEEATKLAMKML 582
Query: 305 HHGLHFNAKRHLRMILDASRAGKVE-LLEITWEHLARADRITPPALIKERFCN 356
G + +I R G+VE LL++ + L+R + T + E+ C+
Sbjct: 583 RVGWIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRTAYNQVIEKLCS 635
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 114/261 (43%), Gaps = 15/261 (5%)
Query: 55 PDIVVYNAVLN-ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
PD + Y V+ C ++ E + + LK P TY + ++ G + E
Sbjct: 272 PDKISYYTVMGFLCKEKRIKELRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALE 331
Query: 114 FFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F R+ + + + + + Y +V++ REG+ D+A V +M +G + Y + LC
Sbjct: 332 FLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLC 391
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLV 231
K ++A + ++ K KP VSYT L+ +GN A + N + + PN +
Sbjct: 392 QERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAI 451
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T ++++ + G EA L +EM KKG P N ++ + E+
Sbjct: 452 TYSVLMHGFRREGKSSEACDLVREMI-----------KKGF-FPTPVEINLLIQSLCQEE 499
Query: 292 RWDDLELVYKRMLHHGLHFNA 312
+ D+ + ++ L++G N
Sbjct: 500 KVDEAKRFMEQCLNNGCAVNV 520
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 93/208 (44%), Gaps = 10/208 (4%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
++V + V++ ++ E A +L + + P TY +++ + G+ +
Sbjct: 519 NVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLA 578
Query: 116 RKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
K+ + +IP + Y+ +++ R G+ ++ + +E M R +A Y + LCS
Sbjct: 579 MKMLRVGWIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQECRTA--YNQVIEKLCSF 636
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG----NIQNAAYIFNQMKNFCSPNL 230
G E+A + K+ + A+K + LI++ L G + A +FN +N P+L
Sbjct: 637 GNLEQAYKLLGKVLRTASKIDANTCHMLIESYLSKGIPLMSYNVACRMFN--RNLI-PDL 693
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
C + K + G EEA KL E
Sbjct: 694 KLCEKVSKKLMLEGKSEEADKLILRFVE 721
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 118/292 (40%), Gaps = 30/292 (10%)
Query: 48 RWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK 107
+W R +P +VY A+L + K +GA VL+ + ++ + +G VM GK
Sbjct: 127 QWRYRHDP--IVYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGYVMVSYSRAGK 184
Query: 108 YNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
+QK+ I P+ ++ L + D+AV +E M+ I + Y
Sbjct: 185 LRNAMRXLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIXPNVITYNC 244
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC 226
L + C + E+A + ++ P +SY ++ I+ + +M
Sbjct: 245 LIKGYCDLHRLEDAXELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKELRLLMEKMLKDS 304
Query: 227 S--PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR------------------- 265
+ P+ VT N V +HG +EA++ +E E +++
Sbjct: 305 NLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKA 364
Query: 266 -----EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
E KG IPD+ T+ ++++ E++ D + + ++M HG N
Sbjct: 365 KEIVNEMFSKG-CIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNT 415
>gi|15219046|ref|NP_175671.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207557|sp|Q9SSR4.1|PPR77_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g52620
gi|5903044|gb|AAD55603.1|AC008016_13 Contains 3 PF|01535 DUF domains [Arabidopsis thaliana]
gi|332194709|gb|AEE32830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 819
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/344 (20%), Positives = 144/344 (41%), Gaps = 55/344 (15%)
Query: 48 RWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK 107
RW P+IV YN ++ + E A+ V ++LK +G P+ T+G ++ G
Sbjct: 231 RWGKGCIPNIVFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGD 290
Query: 108 Y-----------------------NLVYEFFRK-------------VQKSYIPNALAYKV 131
+ N++ +R + P+ Y +
Sbjct: 291 FVASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVATYNI 350
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA 191
L+N L +EGK + AV +++ ++G++ + Y L + C + + + A + ++ +
Sbjct: 351 LINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERG 410
Query: 192 NKPLVVSYTGLIQACLDSGNIQNAAYI-FNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAM 250
KP +V+Y LI + SG++ +A + + SP+ N+++ + G F A
Sbjct: 411 CKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAK 470
Query: 251 KLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHF 310
LF EM + + ++PD Y + T++D +D+ V+ + G+
Sbjct: 471 LLFSEMLDRN------------ILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKV 518
Query: 311 NAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERF 354
+ H MI R+G ++ E LA +R+ L+ ++F
Sbjct: 519 DVVHHNAMIKGFCRSGMLD------EALACMNRMNEEHLVPDKF 556
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 109/239 (45%), Gaps = 14/239 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PDIV Y +++ V + A + +L +G P A Y ++M + G++
Sbjct: 412 KPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKL 471
Query: 114 FFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F + + ++ +P+A Y L++ R G DEA +G+ + + + C
Sbjct: 472 LFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFC 531
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
+G +EAL M+++ + P +Y+ +I + ++ A IF M KN C PN+V
Sbjct: 532 RSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVV 591
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T ++ + G F+ A + F+EM ++P++ T+ T++ + A E
Sbjct: 592 TYTSLINGFCCQGDFKMAEETFKEMQLRD------------LVPNVVTYTTLIRSLAKE 638
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/293 (20%), Positives = 130/293 (44%), Gaps = 14/293 (4%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD+ YN ++N + + E A L + ++G P+ +Y +++ +Y++ +
Sbjct: 342 KPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASK 401
Query: 114 FFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++ ++ P+ + Y +L++ L G D+AV+ + RG+ AA+Y L LC
Sbjct: 402 LLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLC 461
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCSPNLV 231
G+ A + ++ P Y LI + SG+ A +F+ ++ ++V
Sbjct: 462 KTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVV 521
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
N M+K + G+ +EA+ M E+ ++PD +T++T++D ++
Sbjct: 522 HHNAMIKGFCRSGMLDEALACMNRMNEEH------------LVPDKFTYSTIIDGYVKQQ 569
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI 344
+++ M + N + +I G ++ E T++ + D +
Sbjct: 570 DMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLV 622
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 98/244 (40%), Gaps = 24/244 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + L + G R LP K + L+R + PD VY ++
Sbjct: 448 PDAAIYNMLMSGLCKTG------------RFLPAKLLFSEMLDR---NILPDAYVYATLI 492
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-I 123
+ +R ++ A V ++G K + +++ G + ++ + + +
Sbjct: 493 DGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLV 552
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK---CEEA 180
P+ Y +++ ++ A+ ME+ + Y L C G EE
Sbjct: 553 PDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEET 612
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACL-DSGNIQNAAYIFN-QMKNFCSPNLVTCNIMVK 238
+M V N VV+YT LI++ +S ++ A Y + M N C PN VT N +++
Sbjct: 613 FKEMQLRDLVPN---VVTYTTLIRSLAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQ 669
Query: 239 AYLE 242
+++
Sbjct: 670 GFVK 673
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 77/213 (36%), Gaps = 51/213 (23%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ L PD Y+ +++ V+++ A + + +++ KP+ TY ++ G +
Sbjct: 548 EEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFK 607
Query: 110 LVYEFFRKVQ-KSYIPNALAYKVLVNTLWREG---------------------------- 140
+ E F+++Q + +PN + Y L+ +L +E
Sbjct: 608 MAEETFKEMQLRDLVPNVVTYTTLIRSLAKESSTLEKAVYYWELMMTNKCVPNEVTFNCL 667
Query: 141 ------KTDEAVSAVED----------------MERRGIVGSAALYYDLARCLCSAGKCE 178
KT V A D M+ G AA Y CLC G +
Sbjct: 668 LQGFVKKTSGKVLAEPDGSNHGQSSLFSEFFHRMKSDGWSDHAAAYNSALVCLCVHGMVK 727
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
A M DK+ K P VS+ ++ GN
Sbjct: 728 TACMFQDKMVKKGFSPDPVSFAAILHGFCVVGN 760
>gi|224076898|ref|XP_002305039.1| predicted protein [Populus trichocarpa]
gi|222848003|gb|EEE85550.1| predicted protein [Populus trichocarpa]
Length = 800
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 16/235 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
LEPD+V +N +L A RR A + + +K Q KP+A T+ +++E + GK
Sbjct: 475 LEPDVVTFNILLAAFSRRGLANEALKLYEYMKSQDLKPNAITHNVMIEGLCIGGKVTEAE 534
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
FF ++ I N Y ++ T++A ++ RG++ Y L LC
Sbjct: 535 AFFCNMEDKSIDN---YGAMITGYCEAKHTEKASELFFELSERGLLMDRGYIYKLLEKLC 591
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
G+ + AL + + + +P Y +I AC +G+++NA +F+ + K+ +P++
Sbjct: 592 EEGEKDRALWLLKTMLDLNMEPSKDMYGKVITACYRAGDMRNAEAVFDILRKSGLTPDIF 651
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
T M+ EA LFQ+M K + PD+ TF +LD
Sbjct: 652 TYTTMINVCCRQNRLSEARNLFQDM------------KHRGIKPDLVTFTVLLDG 694
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 125/302 (41%), Gaps = 27/302 (8%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P+ Y+ ++ A R+ A V Q+++ G P+A Y +E + A + + Y
Sbjct: 230 LNPNDYTYSIIIKAFCRKGSLVEASNVFQEMELCGVIPNAYAYTTYIEGLCANQRSDFGY 289
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ + ++ IP + AY ++ E K D A + DME++ ++ A Y +L R
Sbjct: 290 QVLQAWKEGNIPIDVYAYVAVIRGFCNEMKMDRAEVVLGDMEKQELISDARCYSELIRGY 349
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C AG +AL + + K V + ++Q + G F + K+ +
Sbjct: 350 CKAGDLSKALALHNDMESKGIKTNCVIVSTILQYFCEKGMHSQVVEEFKRFKDLRIFLDE 409
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAE------------------------DSNHINRE 266
V+ NI+V A + ++A+ L EM D+ + E
Sbjct: 410 VSYNIVVDALCKLEKVDQAVALLDEMKGKQMDMDIMHYTTLINGYCHVGKLVDAFRVFEE 469
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+ KGL PD+ TFN +L A + ++ +Y+ M L NA H MI G
Sbjct: 470 MEGKGLE-PDVVTFNILLAAFSRRGLANEALKLYEYMKSQDLKPNAITHNVMIEGLCIGG 528
Query: 327 KV 328
KV
Sbjct: 529 KV 530
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 96/203 (47%), Gaps = 4/203 (1%)
Query: 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR 116
I VY+A++ + V + A L Q+K++G P T+ +M ++A GK + ++
Sbjct: 164 IQVYDALVKSYVTAGMLDEAINALFQIKRRGFLPHIFTFNYLMNKLIANGKVDAALAIYK 223
Query: 117 KVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
+++ + PN Y +++ R+G EA + ++ME G++ +A Y LC+
Sbjct: 224 QLKSLGLNPNDYTYSIIIKAFCRKGSLVEASNVFQEMELCGVIPNAYAYTTYIEGLCANQ 283
Query: 176 KCEEALMQMDKICKVANKPL-VVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTC- 233
+ + Q+ + K N P+ V +Y +I+ + + A + M+ + C
Sbjct: 284 RSDFGY-QVLQAWKEGNIPIDVYAYVAVIRGFCNEMKMDRAEVVLGDMEKQELISDARCY 342
Query: 234 NIMVKAYLEHGLFEEAMKLFQEM 256
+ +++ Y + G +A+ L +M
Sbjct: 343 SELIRGYCKAGDLSKALALHNDM 365
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/325 (20%), Positives = 136/325 (41%), Gaps = 26/325 (8%)
Query: 44 GTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
G +E+ + L D Y+ ++ + A + ++ +G K + +++
Sbjct: 328 GDMEKQE--LISDARCYSELIRGYCKAGDLSKALALHNDMESKGIKTNCVIVSTILQYFC 385
Query: 104 ACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G ++ V E F++ + I + ++Y ++V+ L + K D+AV+ +++M+ + +
Sbjct: 386 EKGMHSQVVEEFKRFKDLRIFLDEVSYNIVVDALCKLEKVDQAVALLDEMKGKQMDMDIM 445
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y L C GK +A +++ +P VV++ L+ A G A ++ M
Sbjct: 446 HYTTLINGYCHVGKLVDAFRVFEEMEGKGLEPDVVTFNILLAAFSRRGLANEALKLYEYM 505
Query: 223 KN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------------NHINR-- 265
K+ PN +T N+M++ G EA F M + S H +
Sbjct: 506 KSQDLKPNAITHNVMIEGLCIGGKVTEAEAFFCNMEDKSIDNYGAMITGYCEAKHTEKAS 565
Query: 266 ----EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILD 321
E ++GL++ Y + +L+ E D + K ML + + + ++I
Sbjct: 566 ELFFELSERGLLMDRGYIYK-LLEKLCEEGEKDRALWLLKTMLDLNMEPSKDMYGKVITA 624
Query: 322 ASRAGKVELLEITWEHLARADRITP 346
RAG + E ++ L R +TP
Sbjct: 625 CYRAGDMRNAEAVFDIL-RKSGLTP 648
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 48/168 (28%)
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
Y LV + G DEA++A+ ++RRG +
Sbjct: 166 VYDALVKSYVTAGMLDEAINALFQIKRRGFL----------------------------- 196
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLF 246
P + ++ L+ + +G + A I+ Q+K+ +PN T +I++KA+ G
Sbjct: 197 ------PHIFTFNYLMNKLIANGKVDAALAIYKQLKSLGLNPNDYTYSIIIKAFCRKGSL 250
Query: 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
EA +FQEM VIP+ Y + T ++ A +R D
Sbjct: 251 VEASNVFQEMELCG------------VIPNAYAYTTYIEGLCANQRSD 286
>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
Length = 794
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 132/308 (42%), Gaps = 25/308 (8%)
Query: 33 MRSLPKKKFKTGTLERWDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ 88
M L K+ L+ +D L+ P++ +Y +L++ + + A +L +K +G
Sbjct: 214 MDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGC 273
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNAL-AYKVLVNTLWREGKTDEAVS 147
P TY + + G+ N ++ +Q L Y L++ L++ + DE
Sbjct: 274 LPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFG 333
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
+ M R I LY + R AG+ E+AL +D + K P Y +++
Sbjct: 334 YYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLC 393
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
D G+++ A + ++M +N + T IM+ + GL +EAM++F EM E
Sbjct: 394 DHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCD---- 449
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHF--NAKRHLRMILDASR 324
P + T+N ++D E R ++ RML H + N LR+ L A++
Sbjct: 450 --------PTVMTYNALIDGFYREGRLEE-----ARMLFHKMEMGNNPSLFLRLTLGANQ 496
Query: 325 AGKVELLE 332
E L
Sbjct: 497 VCDSESLR 504
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 109/291 (37%), Gaps = 49/291 (16%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYIPNALAYKVLVN 134
A ++ + +P+A Y +++ ++ G L + R V PN Y VL++
Sbjct: 156 AVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMD 215
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194
L ++G +A+ ++M RGI+ + +Y L LC+AGK +EA+ + + P
Sbjct: 216 GLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLP 275
Query: 195 LVVSYTGLIQACLDSGNIQNA------------------------------------AYI 218
V+Y + G + A Y
Sbjct: 276 DEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYY 335
Query: 219 FNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
++ SP++V IM++ E G E+A+ M KKG V PD +
Sbjct: 336 KTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVM-----------KKKGFV-PDTF 383
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+NT+L + + ML + L ++ MI + G V+
Sbjct: 384 CYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVD 434
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/354 (18%), Positives = 139/354 (39%), Gaps = 77/354 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y + +L AG I E ++ SM+ D PD V YNA L
Sbjct: 240 PNVKIYTVLLSSLCNAGKIDEAVQLLGSMK---------------DKGCLPDEVTYNAFL 284
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + AF L L+ G Y +++ + +++ + +++ ++++
Sbjct: 285 SGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNIS 344
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY----------DLARC--- 170
P+ + Y +++ G+ ++A+S ++ M+++G V Y DL R
Sbjct: 345 PDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTL 404
Query: 171 ----------------------LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
LC G +EA+ D++ + P V++Y LI
Sbjct: 405 RSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYR 464
Query: 209 SGNIQNAAYIFNQMKNFCSPNLV---------TCNI-----MVKAYLEHGLFEEAMKLFQ 254
G ++ A +F++M+ +P+L C+ +V + G +A KL +
Sbjct: 465 EGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLR 524
Query: 255 EMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+ + V+PD+ T+NT+++ + D ++K + G+
Sbjct: 525 SIIDSG------------VVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGI 566
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 81/160 (50%), Gaps = 15/160 (9%)
Query: 143 DEAV-SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
DEA+ A+ D G+ S++ + L SAG+ +A+ ++ + ++P Y
Sbjct: 118 DEAMFDALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNT 177
Query: 202 LIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
+++A +DSG I A ++N+M C+PN T N+++ + G+ +A+K+F EM +
Sbjct: 178 ILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRG 237
Query: 261 NHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELV 299
++P++ + +L + C A K + ++L+
Sbjct: 238 ------------IMPNVKIYTVLLSSLCNAGKIDEAVQLL 265
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D + PD+V YN ++N + + +GA + ++L+ +G P TYG +++ +L + N
Sbjct: 528 DSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHREN 587
Query: 110 LVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVS 147
F+ + Q P+ Y ++ +L R K +A++
Sbjct: 588 DAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAIN 626
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 57/290 (19%), Positives = 112/290 (38%), Gaps = 43/290 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKF---------------KTGTLERW 49
PD V Y + +AG I++ +D M+ KK F G LER
Sbjct: 345 PDVVLYTIMIRGCAEAGRIEDALSFLDVMK---KKGFVPDTFCYNTVLKVLCDHGDLERA 401
Query: 50 DPRLEPDIVVYNAVLNACV---------RRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
L +++ N VL++ +R + A + ++ + G P+ TY +++
Sbjct: 402 HT-LRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALID 460
Query: 101 VMLACGKYNLVYEFFRKVQKSYIPNAL--------------AYKVLVNTLWREGKTDEAV 146
G+ F K++ P+ + + LV+ + + G+ +A
Sbjct: 461 GFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAY 520
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
+ + G+V Y L LC A + A+ ++ P ++Y LI
Sbjct: 521 KLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGL 580
Query: 207 LDSGNIQNAAYIF-NQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
L + +A +F N +++ SP+L N M+++ +A+ L+ +
Sbjct: 581 LRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLD 630
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 14/154 (9%)
Query: 178 EEALMQMDKICKVANKPLVVS-YTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNI 235
+EA+ + A P S + L+ A +G +A F++M F S P N
Sbjct: 118 DEAMFDALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNT 177
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
++KA ++ G+ A+ L+ M NR T+N ++D + D
Sbjct: 178 ILKALVDSGVILLALALYNRMVAAGCAPNRA------------TYNVLMDGLCKQGMAGD 225
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++ ML G+ N K + ++ AGK++
Sbjct: 226 ALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKID 259
>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Brachypodium distachyon]
Length = 966
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 120/258 (46%), Gaps = 3/258 (1%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDP-RLEPDIVVY 60
+ YP+ V Y ++ L +AG I++ +V + + E D + P++V Y
Sbjct: 552 ACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTY 611
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
A+++ + ++ A +L + G +P+ Y +++ GK + E F ++ K
Sbjct: 612 GALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTK 671
Query: 121 -SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
Y+P+ Y L++ ++++G+ D A+ + +M + Y + L G+ E+
Sbjct: 672 CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEK 731
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVK 238
AL + + + P VV+YT LI +G + +F QM + C+PN VT +++
Sbjct: 732 ALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLIN 791
Query: 239 AYLEHGLFEEAMKLFQEM 256
GL +EA L EM
Sbjct: 792 HCCAAGLLDEAHLLLDEM 809
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 116/231 (50%), Gaps = 8/231 (3%)
Query: 106 GKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
GK+ ++ +++ +K ++P+ Y ++ L + K +++ ++M+R G+ Y
Sbjct: 431 GKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTY 490
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
L C AG E+A D++ V P VV+YT L+ A L S + A IF++M +
Sbjct: 491 TILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVD 550
Query: 225 -FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKG----LVIPDIYT 279
C PN VT + ++ + G ++A ++++++ S ++ ++ +G + P++ T
Sbjct: 551 AACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVT 610
Query: 280 FNTMLDA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ ++D C A+K D EL+ ML G N + +I + GK++
Sbjct: 611 YGALIDGLCKAQKVSDAHELL-DAMLAAGCEPNQIVYDALIDGFCKIGKID 660
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 138/343 (40%), Gaps = 45/343 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + + +AG I++ D MRS+ P++V Y A+L
Sbjct: 485 PDVYTYTILIDSFCKAGLIEQARSWFDEMRSVG---------------CSPNVVTYTALL 529
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK------- 117
+A ++ KQ A + ++ P+A TY +++ + G+ E + K
Sbjct: 530 HAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGN 589
Query: 118 VQKSY----------IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
V+ + PN + Y L++ L + K +A ++ M G + +Y L
Sbjct: 590 VESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDAL 649
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FC 226
C GK + A ++ K P V +YT LI G + A + ++M N C
Sbjct: 650 IDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSC 709
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+PN+VT M+ + G E+A+ L M E KG P++ T+ ++D
Sbjct: 710 NPNVVTYTAMIDGLSKVGEIEKALNLLSLMEE-----------KGCS-PNVVTYTALIDG 757
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ D ++K+M G N + +I AG ++
Sbjct: 758 LGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLD 800
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/283 (20%), Positives = 126/283 (44%), Gaps = 20/283 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V Y +L+ +++KQ+ ++ + +G P+ + + ++ G Y Y+
Sbjct: 304 PNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKL 363
Query: 115 FRKVQK-SYIPNALAYKVLVNTLW--REGKTDEAVSAVEDMERRGIVGSAAL----YYDL 167
F ++ P +AY + + ++ E E + VE + + S L +
Sbjct: 364 FNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANF 423
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-C 226
+RCLC GK E+A + ++ + P +YT +I + ++ + +F +MK
Sbjct: 424 SRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGV 483
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+P++ T I++ ++ + GL E+A F EM + P++ T+ +L A
Sbjct: 484 NPDVYTYTILIDSFCKAGLIEQARSWFDEM------------RSVGCSPNVVTYTALLHA 531
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
K+ ++ RM+ + NA + +I +AG+++
Sbjct: 532 YLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQ 574
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/353 (20%), Positives = 142/353 (40%), Gaps = 54/353 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT Y + L QA +++ F + M+ + G + PD+ Y ++
Sbjct: 450 PDTSTYTKVITFLCQAKKVEKSFLLFQEMK-------RAG--------VNPDVYTYTILI 494
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYI 123
++ + E A +++ G P+ TY ++ L + ++ F R V +
Sbjct: 495 DSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACY 554
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL-M 182
PNA+ Y L++ L + G+ +A E + + ++G E
Sbjct: 555 PNAVTYSALIDGLCKAGEIQKACEVYEKL------------------IGTSGNVESDFYF 596
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ + C +A P VV+Y LI + + +A + + M C PN + + ++ +
Sbjct: 597 EGNDTCTIA--PNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFC 654
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G + A ++F M K +P ++T+ +++D + R D V
Sbjct: 655 KIGKIDNAQEVFLRMT------------KCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLS 702
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVE----LLEITWEHLARADRITPPALI 350
ML+ + N + MI S+ G++E LL + E + +T ALI
Sbjct: 703 EMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALI 755
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/373 (19%), Positives = 154/373 (41%), Gaps = 80/373 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L +A + + +++D+M + EP+ +VY+A++
Sbjct: 606 PNVVTYGALIDGLCKAQKVSDAHELLDAMLA---------------AGCEPNQIVYDALI 650
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + + A V ++ + G PS TY +++ M G+ +L + + + S
Sbjct: 651 DGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCN 710
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y +++ L + G+ ++A++ + ME +G + Y L L GK + +L
Sbjct: 711 PNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKL 770
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN----------FCS------ 227
++ P V+Y LI C +G + A + ++MK+ C+
Sbjct: 771 FKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSK 830
Query: 228 ------------------PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN----- 264
P +++ ++ + G E A++L +E+ E S+ +N
Sbjct: 831 KFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTG 890
Query: 265 ----------------------REYDKKGLVIPDIYTFNTMLDACAAEKRWDD-LELVYK 301
E +KG ++PD+ F +++ +WD+ L+L Y
Sbjct: 891 MYASLIQALCLASQVEEAFTLYTEMTRKG-IVPDLIVFVSLVKGLIEVNKWDEALQLCYG 949
Query: 302 RMLHHGLHFNAKR 314
R H G+++ +
Sbjct: 950 R-CHEGVNWQDNK 961
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 115/256 (44%), Gaps = 22/256 (8%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S P+ V Y ++ L + G I++ +++ M + P++V Y
Sbjct: 708 SCNPNVVTYTAMIDGLSKVGEIEKALNLLSLME---------------EKGCSPNVVTYT 752
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
A+++ + + + + + +Q+ +G P+ TY +++ A G + + +++ +
Sbjct: 753 ALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHT 812
Query: 122 YIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ P L Y V + K ++ +E+ME V A +Y L AG+ E A
Sbjct: 813 HWPKHLQGYHCAVQGFSK--KFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETA 870
Query: 181 LMQMDKICKVANKPLVVS---YTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIM 236
L ++ +V++ + S Y LIQA + ++ A ++ +M + P+L+ +
Sbjct: 871 LELHKELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSL 930
Query: 237 VKAYLEHGLFEEAMKL 252
VK +E ++EA++L
Sbjct: 931 VKGLIEVNKWDEALQL 946
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 5/198 (2%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N ++ C R W+ A L +LK G +PSA TY +++V+ + G+ + + +++
Sbjct: 173 NVLVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSA 232
Query: 121 S-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
S + + L + G+ +A++ +E+ L + L A E
Sbjct: 233 SGFCMDRSTIGYFAQALCKVGRWADALNM---LEKEDFNLDTVLCTQMISGLMEASLFNE 289
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCSPNLVTCNIMVK 238
A+ + ++ + P VV+Y L+ L I N M C+PN N +V
Sbjct: 290 AMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVH 349
Query: 239 AYLEHGLFEEAMKLFQEM 256
Y G + A KLF M
Sbjct: 350 GYCNAGDYAYAYKLFNRM 367
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 63/332 (18%), Positives = 119/332 (35%), Gaps = 63/332 (18%)
Query: 49 WDPRLE-----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGL 97
WD LE P V YNA++ Q E F V +++ G +T G
Sbjct: 185 WDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGY 244
Query: 98 VMEVMLACGK--------------------------------YNLVYEFFRKVQ-KSYIP 124
+ + G+ +N F +++ S IP
Sbjct: 245 FAQALCKVGRWADALNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIP 304
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N + Y+ L++ ++ + + M G + +L+ L C+AG A
Sbjct: 305 NVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLF 364
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAY------IFNQM-KNFCSPNLVTCNIMV 237
+++ + P V+Y I + + NA ++ +M C N V
Sbjct: 365 NRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFS 424
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ G FE+A ++ +EM +KG V PD T+ ++ K+ +
Sbjct: 425 RCLCGVGKFEKAFQILKEMM-----------RKGFV-PDTSTYTKVITFLCQAKKVEKSF 472
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
L+++ M G++ + + +I +AG +E
Sbjct: 473 LLFQEMKRAGVNPDVYTYTILIDSFCKAGLIE 504
>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
Length = 514
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 110/239 (46%), Gaps = 14/239 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
++V + ++N R + A ++ ++ ++G +P A TYG ++ M G
Sbjct: 9 NVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNML 68
Query: 116 RKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
RK+ +S I N + Y +V+ L ++G +A + +M +GI + Y + CS
Sbjct: 69 RKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSY 128
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTC 233
GK +A + + + P VV+++ LI A + G + A ++ +M + P +T
Sbjct: 129 GKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITY 188
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+ M+ + +H E+A +F M KG PDI T NT++D C KR
Sbjct: 189 SSMIDGFCKHSRLEDAKHMFDLMV-----------SKGCS-PDIITLNTLIDGCCRAKR 235
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 91/426 (21%), Positives = 174/426 (40%), Gaps = 91/426 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y +I + + G D + ++ L K + +++ ++V+Y+A++
Sbjct: 43 PDAVTYGTIVNGMCKLG------DTVSALNMLRKMD---------ESQIKANVVIYSAIV 87
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + A + ++ ++G P+ TY +++ + GK++ + R ++++
Sbjct: 88 DRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNID 147
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + L+N +EGK A +M RR I + Y + C + E+A
Sbjct: 148 PDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHM 207
Query: 184 MDKICKVANKPLVVSYTGLIQACLDS-----------GNIQNAAYIFNQM-KNFCSPNLV 231
D + P +++ LI C + GN+ A +F +M N SP++V
Sbjct: 208 FDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIV 267
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQ-----EMAEDS-------------NHINREYD----- 268
TCN ++ E+G E+A+++F+ +M D+ N ++ +D
Sbjct: 268 TCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSL 327
Query: 269 --------------------KKG--LVIPDIY-------------TFNTMLDACAAEKRW 293
K+G L DIY T+N+M+D + R
Sbjct: 328 PVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRL 387
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLAR---ADRITPPAL 349
++ + M+ G + +I +AG+V + LE+ E R AD IT AL
Sbjct: 388 EEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNAL 447
Query: 350 IKERFC 355
I FC
Sbjct: 448 I-HGFC 452
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 104/238 (43%), Gaps = 17/238 (7%)
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
V+ N + + L+N L REG+ +A++ V+ M G A Y + +C G
Sbjct: 2 VETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDT 61
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIM 236
AL + K+ + K VV Y+ ++ GN A IF +M + PN++T N M
Sbjct: 62 VSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCM 121
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ Y +G + +A +L ++M E R D PD+ TF+ +++A E +
Sbjct: 122 IDGYCSYGKWSDAEQLLRDMIE------RNID------PDVVTFSALINAFVKEGKVSGA 169
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLEITWEHLARADRITPPALI 350
E +Y+ ML + + MI + ++E + ++ D IT LI
Sbjct: 170 EELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLI 227
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/213 (17%), Positives = 93/213 (43%), Gaps = 2/213 (0%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
+++ D N ++N + + + A+ + L G + TY +++ V + G +
Sbjct: 296 KMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRA 355
Query: 112 YEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ + ++ K IP+ + Y +V+ ++ + +EA V+ M G + L +
Sbjct: 356 EDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKG 415
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
C AG+ ++ L ++C+ ++Y LI G++ A IF +M + P+
Sbjct: 416 YCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPD 475
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNH 262
+T M+ ++ + + +++ + +H
Sbjct: 476 TITFRSMLAGLCTKAELQKGLTMLEDLQKSVDH 508
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 96/216 (44%), Gaps = 20/216 (9%)
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
M G + + L LC G+ +AL +D++ + ++P V+Y ++ G+
Sbjct: 1 MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60
Query: 212 IQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270
+A + +M ++ N+V + +V + G +A +F EM E K
Sbjct: 61 TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHE-----------K 109
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
G + P++ T+N M+D + +W D E + + M+ + + +I + GKV
Sbjct: 110 G-IFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSG 168
Query: 331 LEITWEHLARAD----RITPPALIKERFC--NRLEN 360
E + + R + IT ++I + FC +RLE+
Sbjct: 169 AEELYREMLRRNIFPTTITYSSMI-DGFCKHSRLED 203
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/151 (17%), Positives = 67/151 (44%), Gaps = 1/151 (0%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
LE + P V YN++++ ++ + E A ++ + +G P T+ +++
Sbjct: 360 LEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKA 419
Query: 106 GKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G+ + E F ++ Q+ + + + Y L++ + G + A E+M G+ +
Sbjct: 420 GRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITF 479
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPL 195
+ LC+ + ++ L ++ + K + L
Sbjct: 480 RSMLAGLCTKAELQKGLTMLEDLQKSVDHEL 510
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/151 (16%), Positives = 64/151 (42%), Gaps = 16/151 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P TV Y S+ + ++E ++DSM S PD+V ++ ++
Sbjct: 369 PSTVTYNSMVDGFCKQNRLEEARQMVDSMVS---------------EGCSPDVVTFSTLI 413
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + + ++ Q+G TY ++ G N + F ++ S +
Sbjct: 414 KGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVC 473
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
P+ + ++ ++ L + + + ++ +ED+++
Sbjct: 474 PDTITFRSMLAGLCTKAELQKGLTMLEDLQK 504
>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 559
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/330 (20%), Positives = 141/330 (42%), Gaps = 42/330 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM----------------------RSLPKKKFK 42
PD V Y ++ G +K+ D+ + M R L + K
Sbjct: 245 PDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNV 304
Query: 43 TGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
+ + ++PD+ YN++++ K+ A + + Q+G P+ +Y +++
Sbjct: 305 LAMMMKQG--IKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGF 362
Query: 103 LACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
K + F+++ + IP+ + Y L++ L + GK A+ V++M RG+
Sbjct: 363 CKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDK 422
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y + LC + ++A+ + K+ +P + +YT L+ +G +++A +F
Sbjct: 423 ITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFED 482
Query: 222 MKNFCSPNLVTCNI---MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
+ ++ NI M++ + HGLF+E++ L +M E+ IP+
Sbjct: 483 L--LVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENG------------CIPNAV 528
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
T+ ++ + + D E + + M+ GL
Sbjct: 529 TYEIIICSLFDKDENDKAEKLLREMITRGL 558
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 128/300 (42%), Gaps = 26/300 (8%)
Query: 46 LERWDPRL-EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L R D +L +P++V+YN ++++ + K AF + ++ +G P TY ++
Sbjct: 200 LRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCI 259
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK + F K+ I PN + +LV+ +E + EA + + M ++GI
Sbjct: 260 VGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFT 319
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L C + +A + I + P + SY+ +I + A +F +M
Sbjct: 320 YNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMH 379
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE--------------DSNHINREYD 268
N P++VT N ++ + G A+KL EM + D+ N + D
Sbjct: 380 CNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVD 439
Query: 269 KKGLVI---------PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
K ++ PDI T+ T++D R +D +V++ +L G + + MI
Sbjct: 440 KAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMI 499
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 131/280 (46%), Gaps = 16/280 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ D+V+ + ++N + Q +F VL ++ + G +P+ T +++ + G+ +
Sbjct: 103 ITSDLVILSILINCFSQLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQAL 162
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+F KV + N ++Y L+N L + G+T A+ + ++ + + + +Y + +
Sbjct: 163 QFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSM 222
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPN 229
C EA ++ P VV+Y LI G +++A +FN+M +N +PN
Sbjct: 223 CKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENI-NPN 281
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+ T NI+V + + +EA + M K+G + PD++T+N+++D
Sbjct: 282 VYTFNILVDGFCKERRLKEAKNVLAMMM-----------KQG-IKPDVFTYNSLMDRYCL 329
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
K + + ++ + G++ N + MI + KV+
Sbjct: 330 VKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVD 369
>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
Length = 794
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 132/308 (42%), Gaps = 25/308 (8%)
Query: 33 MRSLPKKKFKTGTLERWDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ 88
M L K+ L+ +D L+ P++ +Y +L++ + + A +L +K +G
Sbjct: 214 MDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGC 273
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNAL-AYKVLVNTLWREGKTDEAVS 147
P TY + + G+ N ++ +Q L Y L++ L++ + DE
Sbjct: 274 LPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFG 333
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
+ M R I LY + R AG+ E+AL +D + K P Y +++
Sbjct: 334 YYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLC 393
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
D G+++ A + ++M +N + T IM+ + GL +EAM++F EM E
Sbjct: 394 DHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCD---- 449
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHF--NAKRHLRMILDASR 324
P + T+N ++D E R ++ RML H + N LR+ L A++
Sbjct: 450 --------PTVMTYNALIDGFYREGRLEE-----ARMLFHKMEMGNNPSLFLRLTLGANQ 496
Query: 325 AGKVELLE 332
E L
Sbjct: 497 VRDSESLR 504
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 109/291 (37%), Gaps = 49/291 (16%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYIPNALAYKVLVN 134
A ++ + +P+A Y +++ ++ G L + R V PN Y VL++
Sbjct: 156 AVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMD 215
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194
L ++G +A+ ++M RGI+ + +Y L LC+AGK +EA+ + + P
Sbjct: 216 GLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLP 275
Query: 195 LVVSYTGLIQACLDSGNIQNA------------------------------------AYI 218
V+Y + G + A Y
Sbjct: 276 DEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYY 335
Query: 219 FNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
++ SP++V IM++ E G E+A+ M KKG V PD +
Sbjct: 336 KTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVM-----------KKKGFV-PDTF 383
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+NT+L + + ML + L ++ MI + G V+
Sbjct: 384 CYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVD 434
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 67/345 (19%), Positives = 137/345 (39%), Gaps = 59/345 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y + +L AG I E ++ SM+ D PD V YNA L
Sbjct: 240 PNVKIYTVLLSSLCNAGKIDEAVQLLGSMK---------------DKGCLPDEVTYNAFL 284
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + AF L L+ G Y +++ + +++ + +++ ++++
Sbjct: 285 SGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNIS 344
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY----------DLARC--- 170
P+ + Y +++ G+ ++A+S ++ M+++G V Y DL R
Sbjct: 345 PDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTL 404
Query: 171 ----------------------LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
LC G +EA+ D++ + P V++Y LI
Sbjct: 405 RSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYR 464
Query: 209 SGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN---- 264
G ++ A +F++M+ +P+L + + E KL +M + +
Sbjct: 465 EGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDS--ESLRKLVHDMCQSGQVLKAYKL 522
Query: 265 -REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
R G V+PD+ T+NT+++ + D ++K + G+
Sbjct: 523 LRSIIDSG-VVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGI 566
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 85/171 (49%), Gaps = 16/171 (9%)
Query: 133 VNTLWR-EGKTDEAV-SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
V+ L R DEA+ A+ D G+ S++ + L SAG+ +A+ ++ +
Sbjct: 107 VSLLLRLSSHADEAMFDALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEF 166
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEA 249
++P Y +++A +DSG I A ++N+M C+PN T N+++ + G+ +A
Sbjct: 167 QSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDA 226
Query: 250 MKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELV 299
+K+F EM + ++P++ + +L + C A K + ++L+
Sbjct: 227 LKMFDEMLDRG------------IMPNVKIYTVLLSSLCNAGKIDEAVQLL 265
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D + PD+V YN ++N + + +GA + ++L+ +G P TYG +++ +L + N
Sbjct: 528 DSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHREN 587
Query: 110 LVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVS 147
F+ + Q P+ Y ++ +L R K +A++
Sbjct: 588 DAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAIN 626
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 57/290 (19%), Positives = 112/290 (38%), Gaps = 43/290 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKF---------------KTGTLERW 49
PD V Y + +AG I++ +D M+ KK F G LER
Sbjct: 345 PDVVLYTIMIRGCAEAGRIEDALSFLDVMK---KKGFVPDTFCYNTVLKVLCDHGDLERA 401
Query: 50 DPRLEPDIVVYNAVLNACV---------RRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
L +++ N VL++ +R + A + ++ + G P+ TY +++
Sbjct: 402 HT-LRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALID 460
Query: 101 VMLACGKYNLVYEFFRKVQKSYIPNAL--------------AYKVLVNTLWREGKTDEAV 146
G+ F K++ P+ + + LV+ + + G+ +A
Sbjct: 461 GFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAY 520
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
+ + G+V Y L LC A + A+ ++ P ++Y LI
Sbjct: 521 KLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGL 580
Query: 207 LDSGNIQNAAYIF-NQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
L + +A +F N +++ SP+L N M+++ +A+ L+ +
Sbjct: 581 LRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLD 630
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 14/154 (9%)
Query: 178 EEALMQMDKICKVANKPLVVS-YTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNI 235
+EA+ + A P S + L+ A +G +A F++M F S P N
Sbjct: 118 DEAMFDALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNT 177
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
++KA ++ G+ A+ L+ M NR T+N ++D + D
Sbjct: 178 ILKALVDSGVILLALALYNRMVAAGCAPNRA------------TYNVLMDGLCKQGMAGD 225
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++ ML G+ N K + ++ AGK++
Sbjct: 226 ALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKID 259
>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
Length = 457
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 129/284 (45%), Gaps = 14/284 (4%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D +P++V Y ++L+ + + + A + ++ +G P Y ++++ G
Sbjct: 112 EMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKG 171
Query: 107 KYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
Y F + ++K IP Y L++ R+G+ S +DM R+G V + +
Sbjct: 172 DMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFN 231
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KN 224
+L C G EA ++ + P VVSY L++ G A + +M ++
Sbjct: 232 NLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRS 291
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
P++V+ NI++ Y + G + A+KLF E+ K GL PD ++++T++
Sbjct: 292 GVGPDIVSYNILIDGYSKSGALDHAIKLFYEIP-----------KSGLE-PDAFSYSTII 339
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
D + +V+K M+ +G +A + +++ R ++
Sbjct: 340 DCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERL 383
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/326 (21%), Positives = 134/326 (41%), Gaps = 29/326 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T Y + +L QA +E V M + P++ Y+ ++
Sbjct: 50 PNTYTYGYLLRSLCQAQRFEEARSVFRGMAA---------------QGCSPNVFSYSILI 94
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYI 123
R ++ + A +L ++ G +P+ TYG ++ + GK + F R V +
Sbjct: 95 AGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCP 154
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y VL++ ++G EA E+M +G + + Y L G+
Sbjct: 155 PDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSL 214
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ + P + ++ L+ G++ A +F +M++ C P++V+ N +++
Sbjct: 215 FKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCS 274
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G EA +L +EM V PDI ++N ++D + D ++
Sbjct: 275 KGKPHEAQRLLREMIRSG------------VGPDIVSYNILIDGYSKSGALDHAIKLFYE 322
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV 328
+ GL +A + +I RAGKV
Sbjct: 323 IPKSGLEPDAFSYSTIIDCLCRAGKV 348
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/277 (20%), Positives = 117/277 (42%), Gaps = 14/277 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ Y +L + + +++E A V + + QG P+ +Y +++ + K + E
Sbjct: 50 PNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAEL 109
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ + + PN + Y L++ L + GK EAV M RG +Y L
Sbjct: 110 LNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSK 169
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G EA +++ + P V +Y L+ G +F M + C PN+ T
Sbjct: 170 KGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFT 229
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ + + G EA +LF EM PD+ ++NT++ ++ +
Sbjct: 230 FNNLLDGFCKMGDMVEAHRLFLEMRSLG------------CPPDVVSYNTLMRGMCSKGK 277
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + + + M+ G+ + + +I S++G ++
Sbjct: 278 PHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALD 314
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 94/225 (41%), Gaps = 48/225 (21%)
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
Q Y L+Y L+ L + G+ D DM G V + Y L R LC A + E
Sbjct: 10 QVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFE 69
Query: 179 EA-------------------------LMQMDKICKVA----------NKPLVVSYTGLI 203
EA L + K+ + A ++P VV+Y L+
Sbjct: 70 EARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLL 129
Query: 204 QACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNH 262
G ++ A +F++M C P+ V N+++ + + G EA +LF+EM E
Sbjct: 130 SGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLE---- 185
Query: 263 INREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
KG IP ++T+N++L + + + ++ ++K ML G
Sbjct: 186 -------KG-CIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQG 222
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/276 (18%), Positives = 107/276 (38%), Gaps = 22/276 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
PD V Y + + G + E + + + M SL + G R
Sbjct: 155 PDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSL 214
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ P+I +N +L+ + A + +++ G P +Y +M M +
Sbjct: 215 FKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCS 274
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK + R++ +S + P+ ++Y +L++ + G D A+ ++ + G+ A
Sbjct: 275 KGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFS 334
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + CLC AGK A + + + P L+ + + +F M
Sbjct: 335 YSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMV 394
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
F C P + N+++ + ++ ++F E+ E
Sbjct: 395 KFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTE 430
>gi|218196531|gb|EEC78958.1| hypothetical protein OsI_19424 [Oryza sativa Indica Group]
Length = 975
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 38/280 (13%)
Query: 15 VTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERW-DPRLEPDIVVYNAVLNACVRRKQW 73
++LG G I D+I + ++ + + G + D L P YN++ RRK
Sbjct: 467 ISLGCKGKILMFNDLIHELCNMDRLEEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKYP 526
Query: 74 EGAFWVLQQLKQQGQKP-----------------------------------SATTYGLV 98
+ A +L++++ G P TY
Sbjct: 527 KAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIGFLPDIVTYSAA 586
Query: 99 MEVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
M M G+ + FR + K Y+P+ +A+ +L+N + K DEA +E+M +G+
Sbjct: 587 MNGMCNTGEVDDALHLFRDISCKYYLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGL 646
Query: 158 VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217
S Y + C G+ E+A+ +DK+ +P V++YT LI +G A
Sbjct: 647 FPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIK 706
Query: 218 IFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
++ +M+ C+PN + + + G E A+ F+EM
Sbjct: 707 LWCEMREKGCAPNNIAYTAFINGLRKCGRIETALTYFEEM 746
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/328 (20%), Positives = 125/328 (38%), Gaps = 61/328 (18%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVL--------QQLKQQGQKPSATTYGLVMEVMLACG 106
PD+ + V+ A R EG F V+ + LK P Y +V+E ++ CG
Sbjct: 348 PDVRLLKKVIEAFCR----EGDFAVIGPFINENAEYLKSGSVVP---LYNVVLEELVHCG 400
Query: 107 KYNLVYEFFRK--------------------VQKSYIPNALAYKVLVNTLWREGKTDEAV 146
+ Y+ R +++ PN+ ++ ++V L + K D A+
Sbjct: 401 EVEAAYQLLRSMVCGGQAVNNDVAGGAHMLHIREDAKPNSDSFNIVVCGLCKVKKLDMAL 460
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
+ +DM G G ++ DL LC+ + EE +++ + P +Y L
Sbjct: 461 ALTKDMISLGCKGKILMFNDLIHELCNMDRLEEGYGIFNQMKDLGLTPSEFTYNSLFYGI 520
Query: 207 LDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM--------- 256
+ A + +M+ N P + C MV+ G EA++ M
Sbjct: 521 CRRKYPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIGFLPDI 580
Query: 257 ---------------AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+D+ H+ R+ K +PD+ N +++ + D+ + + +
Sbjct: 581 VTYSAAMNGMCNTGEVDDALHLFRDISCK-YYLPDVVAHNILINGFRKSSKLDEAQKIME 639
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVE 329
ML GL + + MI + G++E
Sbjct: 640 EMLEKGLFPSVVTYNLMIDVCCKTGRIE 667
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 73/154 (47%), Gaps = 16/154 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD VA+ + ++ + E +++ M L K F P +V YN ++
Sbjct: 613 PDVVAHNILINGFRKSSKLDEAQKIMEEM--LEKGLF-------------PSVVTYNLMI 657
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ C + + E A L ++ + ++P+ TY +++ + G+ + + + ++ +K
Sbjct: 658 DVCCKTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCA 717
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
PN +AY +N L + G+ + A++ E+M +G
Sbjct: 718 PNNIAYTAFINGLRKCGRIETALTYFEEMVTKGF 751
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 103/235 (43%), Gaps = 25/235 (10%)
Query: 96 GLVMEVMLACGKYNLVYEFFRKVQKSY--IPNALAYKVLVNTLWREGKTDEAVSAVEDME 153
G ++ + A G + F + S+ PN+ Y L++ L + G+ D+A + + +M
Sbjct: 142 GFLLRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQARLREMV 201
Query: 154 RRGIVGSAALY--YDLARCLCSAGKCEEA---LMQMDKICKVANKPLVVSYTGLIQACLD 208
R GS Y L RC C+AG+ ++A +M ++ V L T L+ A
Sbjct: 202 ARCGDGSVDKYTLTSLLRCYCNAGRPDDANDVFQRMSELGWVDEHVL----TTLMVAFSK 257
Query: 209 SGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
G + A + M+ + T +++V + + G ++AM +F +M
Sbjct: 258 WGKVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMV---------- 307
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA 322
G V+ D+ ++ +++ +K ++K M G+ + R L+ +++A
Sbjct: 308 -SYGFVV-DLAMYSVLIEGLCQQKDIARAVKLFKEMKSSGVAPDV-RLLKKVIEA 359
>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
Length = 526
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 131/303 (43%), Gaps = 25/303 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK--PSATTYGLVMEVMLACGKYNLVY 112
PD+ YN +LN + + A +L + G P +Y V+ G +
Sbjct: 49 PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLD--- 105
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ + + PN + Y ++ L + D+A+ + M + G++ Y + C
Sbjct: 106 ---KMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFC 162
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
S+G+ +EA++ + K+ +P VV+Y L+ +G A IF+ M K P++
Sbjct: 163 SSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDIT 222
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T +++ Y G E L M + H P+ Y F+ ++ A A ++
Sbjct: 223 TYGTLLQGYATKGALVEMHGLLDLMVRNGIH------------PNHYVFSILVCAYAKQE 270
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA----RADRITPP 347
+ ++ LV+ +M GL+ NA + +I ++G+VE + +E + R D I
Sbjct: 271 KVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYN 330
Query: 348 ALI 350
+LI
Sbjct: 331 SLI 333
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/291 (21%), Positives = 131/291 (45%), Gaps = 15/291 (5%)
Query: 41 FKTGTLERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM 99
FK G L++ D R+ P++V YN+++ A + + + A VL + + G P TY ++
Sbjct: 99 FKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIV 158
Query: 100 EVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ G+ F +K++ + P+ + Y L++ L + G+ EA + M +RG+
Sbjct: 159 HGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLK 218
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
Y L + + G E +D + + P ++ L+ A ++ A +
Sbjct: 219 PDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLV 278
Query: 219 FNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI 277
F++M+ +PN VT ++ + G E+AM F++M ++ + PD
Sbjct: 279 FSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEG------------LRPDS 326
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+N+++ + +W+ E ++ ML G+ + +I + G+V
Sbjct: 327 IVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRV 377
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/319 (21%), Positives = 139/319 (43%), Gaps = 32/319 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y SI +G KE + MRS +EPD+V YN+++
Sbjct: 149 PDCMTYNSIVHGFCSSGQPKEAIVFLKKMRS---------------DGVEPDVVTYNSLM 193
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + A + + ++G KP TTYG +++ G ++ + ++ I
Sbjct: 194 DYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 253
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + +LV ++ K +EA+ M ++G+ +A Y + LC +G+ E+A++
Sbjct: 254 PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLY 313
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
+++ +P + Y LI + + A +F +M + C + N ++ ++
Sbjct: 314 FEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFF-NSIIDSHC 372
Query: 242 EHGLFEEAMKLFQEMAE-----DSNHINREYDKKGL--------VIPDIYTFNTMLDACA 288
+ G E+ KLF M D + R + K L ++P+ +T+ M +
Sbjct: 373 KEGRVIESGKLFDLMVRIGVKPDIITLGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENII 432
Query: 289 AEKRWDDLELVYKRMLHHG 307
+ ++L+ ++ M +G
Sbjct: 433 GQGLLEELDQLFLSMEDNG 451
>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
Length = 658
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/349 (22%), Positives = 147/349 (42%), Gaps = 30/349 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y ++ L + I E ++D M+S P V+YN ++
Sbjct: 220 PDGYTYCTLMDGLCKEERIDEAVLLLDEMQS---------------EGCSPSPVIYNVLI 264
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYI 123
+ ++ ++ + +G P+ TY ++ + GK + R V I
Sbjct: 265 DGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCI 324
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L+N L ++ + + + ME RG + +Y L L GK EEA+
Sbjct: 325 PNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTL 384
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
K+ + +P +V Y+ +I G A I N M + C PN+ T + ++K + +
Sbjct: 385 WKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFK 444
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
GL EEA+++++EM E N + ++ ++D R + +V+ +
Sbjct: 445 TGLSEEAIQVWREMDETGCSRNE------------FCYSVLIDGLCGVGRVKEAMMVWSK 492
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE-LLEITWEHLARADRITPPALI 350
ML G+ + + MI G ++ L++ E L + + + P ++
Sbjct: 493 MLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVV 541
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 107/235 (45%), Gaps = 21/235 (8%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK- 117
+Y+ +++ + + E A + +++ ++G +P+ Y V++ + GK N E
Sbjct: 364 IYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGM 423
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+ +PN Y L+ ++ G ++EA+ +M+ G + Y L LC G+
Sbjct: 424 ISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRV 483
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC------SPNLV 231
+EA+M K+ + KP V+Y+ +I+ G++ A ++++M C P++V
Sbjct: 484 KEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEM--LCQEEPKSQPDVV 541
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
T NI++ A+ L M ++R D PD+ T NT L+
Sbjct: 542 TYNILLDGLCMQKDVSRAVDLLNCM------LDRGCD------PDVITCNTFLNT 584
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 129/293 (44%), Gaps = 32/293 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ V Y ++ L G + + +++ M S + P+ V Y +
Sbjct: 289 FPNEVTYNTLIHGLCLKGKLDKAVSLLERMVS---------------SKCIPNDVTYGTL 333
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSY 122
+N V++++ +L ++++G + + Y +++ + GK ++K+ +K
Sbjct: 334 INGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGC 393
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN + Y +++ L REGK +EA + M G + + Y L + G EEA+
Sbjct: 394 RPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQ 453
Query: 183 ---QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVK 238
+MD+ N+ Y+ LI G ++ A ++++M P+ V + M+K
Sbjct: 454 VWREMDETGCSRNE---FCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIK 510
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
G + A+KL+ EM + +E K PD+ T+N +LD +K
Sbjct: 511 GLCGIGSMDAALKLYHEM------LCQEEPKSQ---PDVVTYNILLDGLCMQK 554
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 111/271 (40%), Gaps = 14/271 (5%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
V N ++N + + E +V+ P+ ++ LV++ + G + E FR +
Sbjct: 154 VLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLGFVDRAIEVFRGM 213
Query: 119 -QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+K +P+ Y L++ L +E + DEAV +++M+ G S +Y L LC G
Sbjct: 214 PEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDL 273
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIM 236
+D + P V+Y LI G + A + +M + C PN VT +
Sbjct: 274 SRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTL 333
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ ++ + +L M E +N+ + ++ ++ E + ++
Sbjct: 334 INGLVKQRRAMDGARLLISMEERGYRLNQ------------HIYSVLISGLFKEGKAEEA 381
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
++K+M G N + +I R GK
Sbjct: 382 MTLWKKMAEKGCRPNIVVYSAVIDGLCREGK 412
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 98/231 (42%), Gaps = 14/231 (6%)
Query: 41 FKTGTLER----WDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSA 92
FK G E W E P+IVVY+AV++ R + A +L + G P+
Sbjct: 373 FKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNV 432
Query: 93 TTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVED 151
TY +M+ G + +R++ ++ N Y VL++ L G+ EA+
Sbjct: 433 YTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSK 492
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEAL-MQMDKICKVANK--PLVVSYTGLIQACLD 208
M GI Y + + LC G + AL + + +C+ K P VV+Y L+
Sbjct: 493 MLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCM 552
Query: 209 SGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHG-LFEEAMKLFQEMA 257
++ A + N M + C P+++TCN + E EE +E+
Sbjct: 553 QKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTLSEKSDSCEEGRSFLEELV 603
>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 126/305 (41%), Gaps = 29/305 (9%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P + Y +I L + GH ++ M + +PD+V Y
Sbjct: 170 MGFAPSLITYTTIIKGLCKIGHTTNALQLLKKME---------------EKGCKPDVVAY 214
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQ 119
N V+++ + ++ A + ++ QG P+ TY ++ G+ N F++ +
Sbjct: 215 NTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIG 274
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
++ +PN + + +LV+ L +EG EA E M G+ A Y L C + +E
Sbjct: 275 RNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDE 334
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVK 238
A D + P V Y LI S + A + ++M + +P+ VT + +++
Sbjct: 335 AQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQ 394
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ + G + A KLF+EM ++PD T++ +LD D+
Sbjct: 395 GFCQAGRPQVAQKLFKEMCSYG------------LLPDSITYSILLDGLCKHGHLDEAFR 442
Query: 299 VYKRM 303
+ K M
Sbjct: 443 LLKAM 447
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 100/205 (48%), Gaps = 2/205 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P + VYN ++N + ++ A +L ++ + P TY +M+ G+ + +
Sbjct: 349 PSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKL 408
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F+++ +P+++ Y +L++ L + G DEA ++ M+ I +Y L + +C+
Sbjct: 409 FKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCN 468
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
GK E A + +P VV+YT +I L G A +F +M N C PN T
Sbjct: 469 FGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCT 528
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMA 257
N+ ++ +L +G A++L +EM
Sbjct: 529 YNVAIQGFLRNGDPSNAVRLIEEMV 553
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 117/261 (44%), Gaps = 18/261 (6%)
Query: 53 LEPDIVVYNAVLNACVR--RKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
+ P++ ++N R AF L ++ + G +P+ T+G ++ + + K
Sbjct: 100 IRPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIID 159
Query: 111 VYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
+ F ++ K + P+ + Y ++ L + G T A+ ++ ME +G Y +
Sbjct: 160 AVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVID 219
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCS 227
LC + EA+ ++ P VV+Y+ ++ + G + A +F QM +N
Sbjct: 220 SLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNV-M 278
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
PN VT I+V + G+ EA ++F+ M E+ V PD YT++ ++D
Sbjct: 279 PNTVTFTILVDGLCKEGMILEARRVFEMMTENG------------VEPDAYTYSALMDGY 326
Query: 288 AAEKRWDDLELVYKRMLHHGL 308
+ + D+ + ++ M+ G
Sbjct: 327 CLQSQMDEAQKLFDIMVGKGF 347
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 118/262 (45%), Gaps = 16/262 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P +VV+N +L + V++K + + +Q+ +P+ T +++ + + ++ + F
Sbjct: 67 PPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAF 126
Query: 115 F---RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ + P + + L+N L + K +AV +++ + G S Y + + L
Sbjct: 127 SALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGL 186
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
C G AL + K+ + KP VV+Y +I + A Y F++M + PN+
Sbjct: 187 CKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNV 246
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT + ++ + G EA LF++M I R V+P+ TF ++D E
Sbjct: 247 VTYSSILHGFCNLGQLNEATSLFKQM------IGRN------VMPNTVTFTILVDGLCKE 294
Query: 291 KRWDDLELVYKRMLHHGLHFNA 312
+ V++ M +G+ +A
Sbjct: 295 GMILEARRVFEMMTENGVEPDA 316
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 121/297 (40%), Gaps = 37/297 (12%)
Query: 39 KKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLV 98
K FK G L+P V + +LN + + A + ++ + G PS TY +
Sbjct: 131 KMFKLG--------LQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTI 182
Query: 99 MEVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
++ + G + +K++ K P+ +AY ++++L ++ + +EA+ +M +GI
Sbjct: 183 IKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGI 242
Query: 158 VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217
+ Y + C+ G+ EA ++ P V++T L+ G I A
Sbjct: 243 PPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARR 302
Query: 218 IFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA------------------- 257
+F M +N P+ T + ++ Y +EA KLF M
Sbjct: 303 VFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHC 362
Query: 258 ------EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
E ++ YD+ + PD T++T++ R + ++K M +GL
Sbjct: 363 KSRRLNEAKTLLSEMYDRD--LTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGL 417
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 19/168 (11%)
Query: 1 MSSY---PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDI 57
M SY PD++ Y + L + GH+ E F ++ +M+ + ++EP I
Sbjct: 412 MCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQ---------------ESKIEPHI 456
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
+YN ++ + E A + L +G +PS TY +++ +L G N E FRK
Sbjct: 457 CIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRK 516
Query: 118 -VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
V +PN+ Y V + R G AV +E+M RG ++ +
Sbjct: 517 MVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTF 564
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/305 (19%), Positives = 121/305 (39%), Gaps = 29/305 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y SI G + E + M + P+ V + ++
Sbjct: 244 PNVVTYSSILHGFCNLGQLNEATSLFKQM---------------IGRNVMPNTVTFTILV 288
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKSYI 123
+ + A V + + + G +P A TY +M+ + + + F V K +
Sbjct: 289 DGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFA 348
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y +L+N + + +EA + + +M R + Y L + C AG+ + A
Sbjct: 349 PSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKL 408
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
++C P ++Y+ L+ G++ A + M+ + P++ NI+++
Sbjct: 409 FKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCN 468
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G E A +LF + KG + P + T+ M+ E ++ ++++
Sbjct: 469 FGKLEAARELFSNLF-----------VKG-IQPSVVTYTVMISGLLKEGLSNEACEMFRK 516
Query: 303 MLHHG 307
M+ +G
Sbjct: 517 MVVNG 521
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 86/189 (45%), Gaps = 15/189 (7%)
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK--CEEA 180
+P + + L+ +L ++ +S + M+ I + L CLC + + A
Sbjct: 66 LPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFA 125
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
+ K+ K+ +P V++ L+ I +A +F+++ K +P+L+T ++K
Sbjct: 126 FSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKG 185
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ G A++L ++M E KG PD+ +NT++D+ ++R ++
Sbjct: 186 LCKIGHTTNALQLLKKMEE-----------KG-CKPDVVAYNTVIDSLCKDRRANEAMYF 233
Query: 300 YKRMLHHGL 308
+ M+ G+
Sbjct: 234 FSEMVDQGI 242
>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 401
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 131/303 (43%), Gaps = 25/303 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK--PSATTYGLVMEVMLACGKYNLVY 112
PD+ YN +LN + + A +L + G P +Y V+ G +
Sbjct: 49 PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLD--- 105
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ + + PN + Y ++ L + D+A+ + M + G++ Y + C
Sbjct: 106 ---KMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFC 162
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
S+G+ +EA++ + K+ +P VV+Y L+ +G A IF+ M K P++
Sbjct: 163 SSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDIT 222
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T +++ Y G E L M + H P+ Y F+ ++ A A ++
Sbjct: 223 TYGTLLQGYATKGALVEMHGLLDLMVRNGIH------------PNHYVFSILVCAYAKQE 270
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA----RADRITPP 347
+ ++ LV+ +M GL+ NA + +I ++G+VE + +E + R D I
Sbjct: 271 KVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYN 330
Query: 348 ALI 350
+LI
Sbjct: 331 SLI 333
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/291 (21%), Positives = 131/291 (45%), Gaps = 15/291 (5%)
Query: 41 FKTGTLERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM 99
FK G L++ D R+ P++V YN+++ A + + + A VL + + G P TY ++
Sbjct: 99 FKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIV 158
Query: 100 EVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ G+ F +K++ + P+ + Y L++ L + G+ EA + M +RG+
Sbjct: 159 HGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLK 218
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
Y L + + G E +D + + P ++ L+ A ++ A +
Sbjct: 219 PDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLV 278
Query: 219 FNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI 277
F++M+ +PN VT ++ + G E+AM F++M ++ + PD
Sbjct: 279 FSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEG------------LRPDS 326
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+N+++ + +W+ E ++ ML G+ + +I + G+V
Sbjct: 327 IVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRV 377
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 114/256 (44%), Gaps = 19/256 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y SI +G KE + MRS +EPD+V YN+++
Sbjct: 149 PDCMTYNSIVHGFCSSGQPKEAIVFLKKMRS---------------DGVEPDVVTYNSLM 193
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + A + + ++G KP TTYG +++ G ++ + ++ I
Sbjct: 194 DYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 253
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + +LV ++ K +EA+ M ++G+ +A Y + LC +G+ E+A++
Sbjct: 254 PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLY 313
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
+++ +P + Y LI + + A +F +M + C + N ++ ++
Sbjct: 314 FEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFF-NSIIDSHC 372
Query: 242 EHGLFEEAMKLFQEMA 257
+ G E+ KLF M
Sbjct: 373 KEGRVIESGKLFDLMV 388
>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
gi|224033903|gb|ACN36027.1| unknown [Zea mays]
Length = 655
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/383 (20%), Positives = 162/383 (42%), Gaps = 39/383 (10%)
Query: 5 PDTVAYRSIAVTLGQA---GHIKELFDVIDSMRSLPK-KKFKT--------GTLERWDPR 52
PD V+Y ++ L A G ++EL + + M P F T G ER
Sbjct: 225 PDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEV 284
Query: 53 L--------EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L PDI +Y +++ + E A +L ++ G KP+ Y +++ + +
Sbjct: 285 LAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCS 344
Query: 105 CGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
++ E ++ P + + + +LV+ + G D + +E M RG +
Sbjct: 345 AERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVIT 404
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y + C G +EA+M + + KP +SYT +++ + +A + +QM
Sbjct: 405 YTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMI 464
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ C N +T N ++ + GL E+A++L ++M + PD+ +++T
Sbjct: 465 QQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCS------------PDLISYST 512
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEITWEHL 338
++D + D+ + M++ G+ N + + SR G+ +++ + +
Sbjct: 513 VIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTT 572
Query: 339 ARADRITPPALIKERFCNRLENK 361
R+D + A+I C R E +
Sbjct: 573 IRSDAVLYNAVISS-LCKRGETE 594
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 124/282 (43%), Gaps = 22/282 (7%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPD+V YNAVL K+W +++++ + P+ T+ ++ + G + V+E
Sbjct: 224 EPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHE 283
Query: 114 FFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ V+ P+ Y +++ + +EG + A + M G+ + Y L + LC
Sbjct: 284 VLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLC 343
Query: 173 SAGK---CEEALMQM-DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
SA + EE L +M DK C + + V++ L+ +G + + QM + C
Sbjct: 344 SAERWEETEELLAEMFDKDCPLDD----VTFNILVDFFCQNGLVDRVIELLEQMLERGCM 399
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P+++T ++ + + GL +EA+ L + M P+ ++ +L
Sbjct: 400 PDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCK------------PNTISYTIVLKGL 447
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ +RW D E + +M+ G N +I + G VE
Sbjct: 448 CSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVE 489
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 107/254 (42%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ + G I E ++ SM + K P+ + Y VL
Sbjct: 400 PDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCK---------------PNTISYTIVL 444
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
++W A ++ Q+ QQG + T+ ++ + G E ++ +
Sbjct: 445 KGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCS 504
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++Y +++ L + GKTDEA+ + M +G+ + +Y +A L G+ + +
Sbjct: 505 PDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQM 564
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMKNFCSPNLVTCNIMVKAYLE 242
D I + V Y +I + G + A ++ + + C PN T I+++
Sbjct: 565 FDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLAS 624
Query: 243 HGLFEEAMKLFQEM 256
G +EA ++ E+
Sbjct: 625 EGFVKEAQEMLTEL 638
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 88/226 (38%), Gaps = 52/226 (23%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY------------------ 165
PNA Y +V L G+ +A++ +++M RRG +Y+
Sbjct: 120 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 179
Query: 166 -----------DLARC------LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA-CL 207
D+ C +C G +EAL + + +P VVSY +++ C+
Sbjct: 180 LEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCM 239
Query: 208 DS--GNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
G +Q + ++ C PN+VT N ++ +GLFE ++ +M E
Sbjct: 240 AKRWGCVQE--LMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHG----- 292
Query: 266 EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
PDI + T++D E + + RM +GL N
Sbjct: 293 -------CTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPN 331
>gi|147838532|emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera]
Length = 676
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 100/204 (49%), Gaps = 2/204 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P ++ N +LN ++ + + V +++++ G P+ T+ ++ V+ G V +F
Sbjct: 266 PTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKF 325
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+++ + P+ + Y L+N+ R+G+ D+A + M RRG+V Y L LC
Sbjct: 326 LEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCK 385
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVT 232
G+ EA ++ P +V+Y LI G +Q + + + M N SP+ T
Sbjct: 386 EGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFT 445
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEM 256
C ++V+ Y + G F A+ L E+
Sbjct: 446 CWVLVEGYGKEGKFLSALNLVVEL 469
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 13/196 (6%)
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F R ++ ++P + L+N L + TD E+MER GI + + L LC
Sbjct: 256 FRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCK 315
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G + ++K+ + P +V+Y LI + G + +A Y++ M + P+LV+
Sbjct: 316 DGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVS 375
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
++ + G EA +LF M +GL PDI T+NT++ E +
Sbjct: 376 YTALMNGLCKEGRVREAHQLFHRMVH-----------RGLS-PDIVTYNTLIHGYCKEGK 423
Query: 293 WDDLELVYKRMLHHGL 308
+ + M+ +G+
Sbjct: 424 MQESRSLLHDMIWNGI 439
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 102/227 (44%), Gaps = 7/227 (3%)
Query: 39 KKFKTGTLERWDPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSAT 93
K TG + ++ ++E PDIV YN ++N+ R+ + + AF++ + + ++G P
Sbjct: 315 KDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLV 374
Query: 94 TYGLVMEVMLACGKYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM 152
+Y +M + G+ ++ F R V + P+ + Y L++ +EGK E+ S + DM
Sbjct: 375 SYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDM 434
Query: 153 ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI 212
GI + + L GK AL + ++ + Y+ LI A
Sbjct: 435 IWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRP 494
Query: 213 QNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
A + +M ++ L N ++K++ + EA+ L EM +
Sbjct: 495 FAAKNLLERMSQDGHKXELEIYNELIKSFCQCDCIAEALLLKMEMVD 541
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/289 (19%), Positives = 116/289 (40%), Gaps = 31/289 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y ++ L + G ++E + M + R L PDIV YN ++
Sbjct: 371 PDLVSYTALMNGLCKEGRVREAHQLFHRM------------VHRG---LSPDIVTYNTLI 415
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + + + + +L + G P + T +++E GK+ ++Q+ +
Sbjct: 416 HGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVS 475
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ Y L+ L RE + A + +E M + G +Y +L + C EAL+
Sbjct: 476 ISQDIYSYLIVALCRENRPFAAKNLLERMSQDGHKXELEIYNELIKSFCQCDCIAEALLL 535
Query: 184 MDKICKVANKPLVVSYTGLIQACLD--SGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241
++ KP + +Y +J CL S +++ + + + + P+L C + Y
Sbjct: 536 KMEMVDKEIKPNLATYRAVJ-GCLSRLSRSMEGESLVGEMVASGXLPDLEICRALFYGYC 594
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
++A L + K I D +FN ++ +A+
Sbjct: 595 RENDIDKAESLLS------------FXAKEFQIHDTESFNALIRITSAK 631
>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
Length = 577
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 87/418 (20%), Positives = 180/418 (43%), Gaps = 66/418 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y ++ L +A I E ++ D M +K+++ EPD++ Y+ V+
Sbjct: 66 PNVITYNTVVNGLCKANRIDEGLELFDDM----EKRYEASH------GCEPDVISYSTVI 115
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+A + ++ + A+ ++++ G P+ TY +++ + + + Y +++ + +
Sbjct: 116 DALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMV 175
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRG----IVGSAALYYDL------------ 167
P A+ Y +VN R+GK E + + M+ +G I+ A+ + L
Sbjct: 176 PRAMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQF 235
Query: 168 -------------------ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
LC AGK +EA + ++ + P V++Y+ +I
Sbjct: 236 FERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCK 295
Query: 209 SGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
+G + A +F +M + C P+ VT ++ + EH EA ++ ++M +N +
Sbjct: 296 AGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDM------VNAGF 349
Query: 268 DKKGLVIPDIYTFNTMLD-ACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
IP + T+N ++D C A+ LE +Y +M +A + +I RA
Sbjct: 350 ------IPGLQTYNVLMDCVCGADSVESALE-IYHKMKRKKRQPDANTYAPLIQCLCRAR 402
Query: 327 KVELLEITWEHLARADRITPPALI----KERFCNRLENKDYGSAISCLVSHPVSGSPE 380
+V+ + + + AD + P I E C + E + S + +V +G P+
Sbjct: 403 RVDEAK-EFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKAGEPD 459
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 133/317 (41%), Gaps = 27/317 (8%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
+Y V+N + Q + AF +L ++K++G K + +++ + G+ + E F+ +
Sbjct: 1 MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM 60
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERR-----GIVGSAALYYDLARCLCS 173
+ PN + Y +VN L + + DE + +DME+R G Y + LC
Sbjct: 61 GEECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCK 120
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
A + ++A ++ V P VV+Y+ LI + A + Q+K P +
Sbjct: 121 AQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMY 180
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N +V + G E ++L M E IN I FN ML A
Sbjct: 181 YNAVVNGFKRQGKPSECLELLLHMKEKGFGIN------------IIDFNAMLHALWKNDE 228
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE-----LLEITWEHLARADRITPP 347
+ ++R+L G N + + +AGKV+ LLE+ E D IT
Sbjct: 229 QEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMV-ESKVTPDVITYS 287
Query: 348 ALIKERFC--NRLENKD 362
++I + FC R++ D
Sbjct: 288 SII-DGFCKAGRMDKAD 303
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 127/321 (39%), Gaps = 50/321 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y SI +AG + + DV M P V + +L
Sbjct: 281 PDVITYSSIIDGFCKAGRMDKADDVFTRMMV---------------HECIPHPVTFMTLL 325
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ K+ AF V + + G P TY ++M+ + E + K++ K
Sbjct: 326 HGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQ 385
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+A Y L+ L R + DEA ++ ME +V + A+ + L LC G+ +EA
Sbjct: 386 PDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSV 445
Query: 184 MD---KICKVAN----------------KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
+D +ICK +P +Y ++++ + +A F +M +
Sbjct: 446 LDNVVEICKAGEPDEAVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMAS 505
Query: 225 -FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
C+P LVT +++ + ++A ++F+ M P T T
Sbjct: 506 RGCAPGLVTYTLLIGEACSADMADDAFRIFEAMVAAG------------FTPQAQTMRT- 552
Query: 284 LDACAAEKRWDDLELVYKRML 304
L +C + + DL LV +R++
Sbjct: 553 LSSCLRDAGYQDL-LVRQRIM 572
>gi|255661016|gb|ACU25677.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 367
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 137/283 (48%), Gaps = 15/283 (5%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ ++ PD VVYNA+LN R + + F + + + ++G + S +++ ++ + GK +
Sbjct: 18 ESKVSPDAVVYNAMLNGYFRVGRIKDCFELWELMGREGSR-SVSSFNIMXRGLFBNGKVD 76
Query: 110 LVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
V + +++S Y+ +++ Y +LV+ + G ++++ +E ER+G V A Y +
Sbjct: 77 EVISIWELMKESGYVEDSITYGILVHGFCKNGYLNKSIHVLEIAERKGGVLDAFAYSAMI 136
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCS 227
LC K ++A+ ++ + K KP Y LI + + ++A + +M S
Sbjct: 137 NGLCKEAKLDKAVSVLNGMIKNGCKPNAHVYNALINGLVGASKFEDAIRVLREMGTXHFS 196
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P +VT + ++ + F EA L +EM + KGL P + T++ ++
Sbjct: 197 PTVVTYSXJINGLCKGERFGEAYDLVKEMLD-----------KGLN-PSVITYSLLIKGL 244
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+++ D ++ +++ G + + H MI GK++L
Sbjct: 245 CLDRKVDKALQLWNQVISKGFKPDVQMHNIMIHGLCSVGKMQL 287
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 106/238 (44%), Gaps = 13/238 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D Y+A++N + + + A VL + + G KP+A Y ++ ++ K+
Sbjct: 128 DAFAYSAMINGLCKEAKLDKAVSVLNGMIKNGCKPNAHVYNALINGLVGASKFEDAIRVL 187
Query: 116 RKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
R++ + P + Y J+N L + + EA V++M +G+ S Y L + LC
Sbjct: 188 REMGTXHFSPTVVTYSXJINGLCKGERFGEAYDLVKEMLDKGLNPSVITYSLLIKGLCLD 247
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCN 234
K ++AL +++ KP V + +I G +Q A ++ + C+PNLVT N
Sbjct: 248 RKVDKALQLWNQVISKGFKPDVQMHNIMIHGLCSVGKMQLALSLYYMNRWDCAPNLVTHN 307
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+++ + + G A+ ++ + + + PDI ++N L + R
Sbjct: 308 TLMEGFYKDGDVRNALVIWARILRNG------------LQPDIISYNITLKGLCSCNR 353
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/237 (19%), Positives = 100/237 (42%), Gaps = 13/237 (5%)
Query: 74 EGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLV 133
+GA V +++ + P A Y ++ G+ +E + + + + ++ ++
Sbjct: 7 DGAERVYKEIVESKVSPDAVVYNAMLNGYFRVGRIKDCFELWELMGREGSRSVSSFNIMX 66
Query: 134 NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANK 193
L+ GK DE +S E M+ G V + Y L C G +++ ++ +
Sbjct: 67 RGLFBNGKVDEVISIWELMKESGYVEDSITYGILVHGFCKNGYLNKSIHVLEIAERKGGV 126
Query: 194 PLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKL 252
+Y+ +I + A + N M KN C PN N ++ + FE+A+++
Sbjct: 127 LDAFAYSAMINGLCKEAKLDKAVSVLNGMIKNGCKPNAHVYNALINGLVGASKFEDAIRV 186
Query: 253 FQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH 309
+EM + H + P + T++ +++ +R+ + + K ML GL+
Sbjct: 187 LREMG--TXHFS----------PTVVTYSXJINGLCKGERFGEAYDLVKEMLDKGLN 231
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/178 (17%), Positives = 68/178 (38%), Gaps = 15/178 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y J L + E +D++ M D L P ++ Y+ ++
Sbjct: 197 PTVVTYSXJINGLCKGERFGEAYDLVKEM---------------LDKGLNPSVITYSLLI 241
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
++ + A + Q+ +G KP + +++ + + GK L + + P
Sbjct: 242 KGLCLDRKVDKALQLWNQVISKGFKPDVQMHNIMIHGLCSVGKMQLALSLYYMNRWDCAP 301
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
N + + L+ +++G A+ + R G+ Y + LCS + A++
Sbjct: 302 NLVTHNTLMEGFYKDGDVRNALVIWARILRNGLQPDIISYNITLKGLCSCNRISGAIL 359
>gi|255660996|gb|ACU25667.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 376
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 137/282 (48%), Gaps = 15/282 (5%)
Query: 51 PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
++ PD VVYNA+LN R + + F + + + +G + S +++ ++M + GK +
Sbjct: 19 SKVSPDSVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNGKVDE 77
Query: 111 VYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
V + ++KS ++ +++ + +LV+ + G ++++ +E E++G V A Y +
Sbjct: 78 VISIWELMKKSGFVEDSITFGILVHGFCKNGYINKSLHVLEMAEQKGGVLDAFAYSAMIN 137
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSP 228
LC ++A+ ++ + K KP Y LI + + ++A +F +M CSP
Sbjct: 138 GLCKEANLDKAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSP 197
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
++T N ++ ++ +F EA L +E+ + KGL P + T++ ++
Sbjct: 198 TIITYNTLINGLCKNEMFGEAYNLVKELLD-----------KGLN-PGVITYSMLMKGLC 245
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ + + ++ ++ G + + H +I G+++L
Sbjct: 246 LDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGEMQL 287
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 106/242 (43%), Gaps = 14/242 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D Y+A++N + + A VL + + G KP+A Y ++ ++ K+ F
Sbjct: 128 DAFAYSAMINGLCKEANLDKAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVF 187
Query: 116 RKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
R++ + P + Y L+N L + EA + V+++ +G+ Y L + LC
Sbjct: 188 REMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLD 247
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
K E AL +++ KP V + LI G +Q A ++ M + C+PNLV+
Sbjct: 248 HKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGEMQLALSLYFDMNRWKCAPNLVSH 307
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N +++ + + G A+ ++ + + + PDI ++N L + R
Sbjct: 308 NTLMEGFYKDGDIRNALVIWARILRNG------------LEPDIISYNITLKGLCSCNRI 355
Query: 294 DD 295
D
Sbjct: 356 SD 357
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/137 (18%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D L P ++ Y+ ++ + E A + Q+ +G KP + +++ + + G
Sbjct: 224 ELLDKGLNPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVG 283
Query: 107 KYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ L + + + PN +++ L+ +++G A+ + R G+ Y
Sbjct: 284 EMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343
Query: 166 DLARCLCSAGKCEEALM 182
+ LCS + +A++
Sbjct: 344 ITLKGLCSCNRISDAIL 360
>gi|357509703|ref|XP_003625140.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500155|gb|AES81358.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 855
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 135/308 (43%), Gaps = 36/308 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFK-------TGTLERW------ 49
PD Y ++ G+AG + +++D M ++P + G+ W
Sbjct: 183 PDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNV 242
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
D + PD+V +N +L A Q+ A + +K +P TT+ +++ ++
Sbjct: 243 CKKMTDNGVGPDLVTHNIMLTAFKSGTQYSKALSYFELIKGTHIRPDTTTHNIIIHCLVK 302
Query: 105 CGKYNLVYEFFRKVQKSYI---PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
+Y+ + F +++ P+ + + +++ G + +A M G+ +
Sbjct: 303 LKQYDKAVDIFNSMKEKKSECHPDVVTFTSMIHLYSVCGHIENCEAAFNMMLAEGLKPNI 362
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L + G EAL ++I + +P VVSYT L+ A S Q A IF
Sbjct: 363 VSYNALLGAYAARGMENEALQVFNEIKQNGFRPDVVSYTSLLNAYGRSRKPQKAREIFKM 422
Query: 222 MK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
+K N PN+V+ N ++ AY +GL E+A+++ +EM +D H P++ +
Sbjct: 423 IKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILREMEQDKIH------------PNVVSI 470
Query: 281 NTMLDACA 288
T+L AC
Sbjct: 471 CTLLAACG 478
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/333 (22%), Positives = 140/333 (42%), Gaps = 52/333 (15%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD V + S+ GHI+ + M + L+P+IV YNA+
Sbjct: 324 HPDVVTFTSMIHLYSVCGHIENCEAAFNMMLA---------------EGLKPNIVSYNAL 368
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
L A R A V ++KQ G +P +Y ++ K E F+ ++++ +
Sbjct: 369 LGAYAARGMENEALQVFNEIKQNGFRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNNL 428
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN ++Y L++ G ++A+ + +ME+ I + + L + G+C + +
Sbjct: 429 KPNIVSYNALIDAYGSNGLLEDAIEILREMEQDKIHPNVV---SICTLLAACGRCGQKV- 484
Query: 183 QMDKICKVAN----KPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMV 237
++D + A K V+Y I + ++ G A ++N M K + VT +++
Sbjct: 485 KIDTVLSAAEMRGIKLNTVAYNSAIGSYINVGEYDKAIDLYNSMRKKKIKSDSVTYTVLI 544
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINRE--------YDKK----GLVI----------- 274
+ F EA+ +EM +++E Y K+ G +I
Sbjct: 545 SGCCKMSKFGEALSFMEEMMHLKLPMSKEVYSSIICAYSKQASALGQIIEAESTFNLMKS 604
Query: 275 ----PDIYTFNTMLDACAAEKRWDDLELVYKRM 303
PD+ T+ MLDA A ++W+ L +++ M
Sbjct: 605 LGCSPDVVTYTAMLDAYNAAEKWEKLYALFEEM 637
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 132/308 (42%), Gaps = 35/308 (11%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R +PD YNA++NA R QW A ++ + + PS +TY ++ + G +
Sbjct: 180 RCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEA 239
Query: 112 YEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+K+ + + P+ + + +++ + +A+S E ++ I + + C
Sbjct: 240 LNVCKKMTDNGVGPDLVTHNIMLTAFKSGTQYSKALSYFELIKGTHIRPDTTTHNIIIHC 299
Query: 171 LCSAGKCEEALMQMDKICKVANK---------PLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
L L Q DK + N P VV++T +I G+I+N FN
Sbjct: 300 LVK-------LKQYDKAVDIFNSMKEKKSECHPDVVTFTSMIHLYSVCGHIENCEAAFNM 352
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
M PN+V+ N ++ AY G+ EA+++F E+ ++ PD+ ++
Sbjct: 353 MLAEGLKPNIVSYNALLGAYAARGMENEALQVFNEIKQNGFR------------PDVVSY 400
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL-- 338
++L+A ++ ++K + + L N + ++DA G LLE E L
Sbjct: 401 TSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSY-NALIDA--YGSNGLLEDAIEILRE 457
Query: 339 ARADRITP 346
D+I P
Sbjct: 458 MEQDKIHP 465
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 113/267 (42%), Gaps = 33/267 (12%)
Query: 5 PDTVAYRSIAVTLGQA---GHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
PD V+Y S+ G++ +E+F +I L+P+IV YN
Sbjct: 395 PDVVSYTSLLNAYGRSRKPQKAREIFKMIKR------------------NNLKPNIVSYN 436
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
A+++A E A +L++++Q P+ + ++ CG+ + +
Sbjct: 437 ALIDAYGSNGLLEDAIEILREMEQDKIHPNVVSICTLLAACGRCGQKVKIDTVLSAAEMR 496
Query: 122 YIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
I N +AY + + G+ D+A+ M ++ I + Y L C K EA
Sbjct: 497 GIKLNTVAYNSAIGSYINVGEYDKAIDLYNSMRKKKIKSDSVTYTVLISGCCKMSKFGEA 556
Query: 181 LMQMDKI-------CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
L M+++ K ++ +Y+ A G I A FN MK+ CSP++VT
Sbjct: 557 LSFMEEMMHLKLPMSKEVYSSIICAYSKQASAL---GQIIEAESTFNLMKSLGCSPDVVT 613
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAED 259
M+ AY +E+ LF+EM E+
Sbjct: 614 YTAMLDAYNAAEKWEKLYALFEEMEEN 640
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 124/310 (40%), Gaps = 61/310 (19%)
Query: 28 DVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG 87
+V+DS+ SL + G L RW R RK + +++++L Q+G
Sbjct: 87 EVVDSVLSLTLRDDIEGLLNRWIGRFA---------------RKNFP---FLIRELTQRG 128
Query: 88 QKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVS 147
NLV+ + + QK+Y Y +++ R +TD+A
Sbjct: 129 SIEHC----------------NLVFSWMKN-QKNYCARTDIYNMMIRLHARHNRTDQARG 171
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
+M++ A Y L AG+ A+ MD + + A P +Y LI AC
Sbjct: 172 LFFEMQKCRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACG 231
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ-----EMAEDSN 261
SGN + A + +M N P+LVT NIM+ A+ + +A+ F+ + D+
Sbjct: 232 SSGNWKEALNVCKKMTDNGVGPDLVTHNIMLTAFKSGTQYSKALSYFELIKGTHIRPDTT 291
Query: 262 HIN---------REYD-----------KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
N ++YD KK PD+ TF +M+ + ++ E +
Sbjct: 292 THNIIIHCLVKLKQYDKAVDIFNSMKEKKSECHPDVVTFTSMIHLYSVCGHIENCEAAFN 351
Query: 302 RMLHHGLHFN 311
ML GL N
Sbjct: 352 MMLAEGLKPN 361
>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 652
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/306 (21%), Positives = 136/306 (44%), Gaps = 29/306 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + + + G +KE V D M K G ++P+ V YN+++
Sbjct: 293 PDVYTFNILVNAFCKDGKMKEGKTVFDMM-------MKQG--------IKPNFVTYNSLM 337
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ K+ A + + Q G P +Y +++ K++ F+++ +K+ I
Sbjct: 338 DGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNII 397
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ L + G+ A+ V+ M RG+ + Y + LC + ++A+
Sbjct: 398 PDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIAL 457
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLE 242
+ K+ +P + +Y+ LI+ SG +++A +F + + N+ T IM++ +
Sbjct: 458 LTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCV 517
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
GLF EA+ L +M ++ IPD T+ ++ + + D E + +
Sbjct: 518 EGLFNEALALLSKMEDNG------------CIPDAKTYEIIILSLFKKDENDMAEKLLRE 565
Query: 303 MLHHGL 308
M+ G+
Sbjct: 566 MIARGV 571
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/361 (21%), Positives = 152/361 (42%), Gaps = 36/361 (9%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPK--KKFKTGTL------------ 46
M PDT+ + ++ L G I++ F D + +L + GTL
Sbjct: 149 MGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRA 208
Query: 47 -----ERWDPRL-EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
+R D L +P++V+YN ++++ + K AF + ++ +G P TY ++
Sbjct: 209 ALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALIS 268
Query: 101 VMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
GK N + F K + ++ P+ + +LVN ++GK E + + M ++GI
Sbjct: 269 GFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKP 328
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219
+ Y L C + +A + + + P + SY+ +I A +F
Sbjct: 329 NFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLF 388
Query: 220 NQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI 277
+M KN P++VT + ++ + G A++L +M + V P I
Sbjct: 389 KEMHRKNII-PDVVTYSSLIDGLSKSGRISYALQLVDQMHDRG------------VPPTI 435
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEH 337
T+N++LDA + D + ++ G+ N + +I ++GK+E +E
Sbjct: 436 RTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEG 495
Query: 338 L 338
L
Sbjct: 496 L 496
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 116/259 (44%), Gaps = 14/259 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P +N +L + V+ K + ++ Q+++ +G KP+ +++ G +
Sbjct: 83 PPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSV 142
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F K+ K Y+P+ + + L+ L +G+ +A + + G Y L LC
Sbjct: 143 FAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCK 202
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+ AL + ++ +P VV Y +I + + A +F++M SP++VT
Sbjct: 203 VGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVT 262
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+ ++ + G +A+ LF +M ++ + PD+YTFN +++A + +
Sbjct: 263 YSALISGFCILGKLNDAIDLFNKMILEN------------IKPDVYTFNILVNAFCKDGK 310
Query: 293 WDDLELVYKRMLHHGLHFN 311
+ + V+ M+ G+ N
Sbjct: 311 MKEGKTVFDMMMKQGIKPN 329
>gi|449476381|ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
Length = 875
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 124/306 (40%), Gaps = 28/306 (9%)
Query: 51 PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
P P I YN + ++ + + W+ + + KP T+ L++ + G
Sbjct: 112 PHDPPPISFYNLLFRCSLKESRVDCVIWLYKDMAVAKVKPQTYTFNLLISALCEMGYLEN 171
Query: 111 VYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
E F K+ +K PN + +LV R G + +++M G + + Y +
Sbjct: 172 AREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDLLDEMRSSGALPNRVAYNTVIS 231
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-----N 224
LC G+ EA ++K+ +V P +V++ I A SG I A+ IF M+
Sbjct: 232 SLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEEMG 291
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD-------KKGLVI--- 274
PN VT N+M++ + G+FEEA +F M R Y+ + G ++
Sbjct: 292 LPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSETLSLRSYNIWMLGLVRSGKLLEAH 351
Query: 275 ------------PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA 322
P++Y++N ++ + D + M G+ + + ++
Sbjct: 352 LILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGY 411
Query: 323 SRAGKV 328
R GK+
Sbjct: 412 CRRGKI 417
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 128/304 (42%), Gaps = 33/304 (10%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
+ P+ VAY ++ +L G E +++ MR + L PDIV +N
Sbjct: 218 GALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVG---------------LSPDIVTFN 262
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQ----KPSATTYGLVMEVMLACGKYNLVYEFFRK 117
+ A + Q A + + ++ + KP+ TY L++E + G + F
Sbjct: 263 CRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDS 322
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
++ S + +Y + + L R GK EA + +M + I + Y L LC G
Sbjct: 323 MKNSETLSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMF 382
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIM 236
+A + + + P V+Y+ L+ G I A Y+ +M C PN+ TCNI+
Sbjct: 383 SDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNIL 442
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDD 295
+ + + G EA L Q M E R Y GL D T NTM++ C A
Sbjct: 443 LHSLWKEGRASEAEDLLQMMNE------RGY---GL---DNVTCNTMINGLCKAGNLDKA 490
Query: 296 LELV 299
+E+V
Sbjct: 491 IEIV 494
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 114/282 (40%), Gaps = 37/282 (13%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD V Y+ +L+ RR + A +VL+++ Q G P+ T +++ + G+ + +
Sbjct: 399 PDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDL 458
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL---YYDL--- 167
+ + ++ Y + + ++N L + G D+A+ V M RG L + DL
Sbjct: 459 LQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDI 518
Query: 168 ----ARC-------------LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG 210
+C LC G+ +EA ++ ++ P + + I G
Sbjct: 519 RNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQG 578
Query: 211 NIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
+ +A + +M K C+ +L T N +++ E L EM E
Sbjct: 579 KLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERG--------- 629
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
+ P++YT+N ++ + + D + ML G+ N
Sbjct: 630 ---IFPNVYTYNNIISCLSEGGKLKDATCLLDEMLQKGISPN 668
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/322 (18%), Positives = 125/322 (38%), Gaps = 61/322 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD++ Y +I L + G + E KKK LE +L PD ++++ +
Sbjct: 527 PDSITYATIIGGLCKVGRVDE-----------AKKKL----LEMIGKKLSPDSLIFDTFI 571
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
++ + AF VL++++++G S TY +++ + G N ++E +
Sbjct: 572 YNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGL---GSENQIFEIY--------- 619
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
G DE M+ RGI + Y ++ CL GK ++A +
Sbjct: 620 ---------------GLMDE-------MKERGIFPNVYTYNNIISCLSEGGKLKDATCLL 657
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHG 244
D++ + P + ++ LI A + + A +F + C + M L G
Sbjct: 658 DEMLQKGISPNIYTFRILIGAFFKACDFGAAQELFEIALSLCGHKESLYSFMFNELLAGG 717
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
+A +LF+ + S + + + +++ + + DD + +M+
Sbjct: 718 ETLKAKELFEAALDRSLALKN------------FLYRDLIEKLCKDGKLDDASFILHKMM 765
Query: 305 HHGLHFNAKRHLRMILDASRAG 326
F+ + +I + + G
Sbjct: 766 DKQYSFDPASFMPVIDELGKRG 787
>gi|356506793|ref|XP_003522160.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At4g17915-like [Glycine max]
Length = 461
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 126/282 (44%), Gaps = 15/282 (5%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D + PD+V +N +++ VR+ + + + ++ ++G P A ++ ++M + GK +
Sbjct: 76 DAGIPPDVVSFNTLISGAVRKSLFSKSLDLFDEMLKRGINPDAWSHNILMNCLFQLGKPD 135
Query: 110 LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
F+++ + Y +++N L + G A+S +++R G V Y L
Sbjct: 136 EANRVFKEIVLRDEVHPATYNIMINGLCKNGYVGNALSLFRNLQRHGFVPQVLTYNALIN 195
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--FCS 227
LC A + ++A + + + N+P V+YT ++ C + I ++M++ F
Sbjct: 196 GLCKARRLKDARRVLKEFGETGNEPNAVTYTTVMTCCFRCRLFEEGLEILSEMRSLGFTF 255
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
C + + A ++ G +EA ++ + M V PD+ ++NT+++
Sbjct: 256 DGFAYCTV-IAAMIKTGRMQEAEEIVEMMVSSG------------VRPDLVSYNTLINLY 302
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ R DD + + GL + H ++ +AG +
Sbjct: 303 CRQGRLDDALRLLDEIEGEGLECDQYTHTIIVDGLCKAGNFD 344
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P + Y ++ L +A +K+ R + K+ +TG EP+ V Y V+
Sbjct: 185 PQVLTYNALINGLCKARRLKD-------ARRVLKEFGETGN--------EPNAVTYTTVM 229
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
C R + +E +L +++ G Y V+ M+ G+ E + S +
Sbjct: 230 TCCFRCRLFEEGLEILSEMRSLGFTFDGFAYCTVIAAMIKTGRMQEAEEIVEMMVSSGVR 289
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++Y L+N R+G+ D+A+ ++++E G+ + + LC AG + A
Sbjct: 290 PDLVSYNTLINLYCRQGRLDDALRLLDEIEGEGLECDQYTHTIIVDGLCKAGNFDGAQRH 349
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
++ + + +V++ + +G+I +A +F M+
Sbjct: 350 LNYMNSLGFGSNLVAFNCFLDGLGKAGHIDHALRLFEVME 389
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 71/195 (36%), Gaps = 12/195 (6%)
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
++ +P+ + Y L++ R D A S + M GI + L
Sbjct: 40 IRLGVLPDVVTYNTLIDAYCRFATLDVAYSVLARMHDAGIPPDVVSFNTLISGAVRKSLF 99
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMV 237
++L D++ K P S+ L+ G A +F ++ + T NIM+
Sbjct: 100 SKSLDLFDEMLKRGINPDAWSHNILMNCLFQLGKPDEANRVFKEIVLRDEVHPATYNIMI 159
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
++G A+ LF R + G V P + T+N +++ +R D
Sbjct: 160 NGLCKNGYVGNALSLF-----------RNLQRHGFV-PQVLTYNALINGLCKARRLKDAR 207
Query: 298 LVYKRMLHHGLHFNA 312
V K G NA
Sbjct: 208 RVLKEFGETGNEPNA 222
>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 347
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 129/306 (42%), Gaps = 29/306 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y + + G ++E +V+D M L + V YN ++
Sbjct: 47 PNVITYTILIDRFCKEGRLEEARNVLDEMSG---------------KGLALNAVGYNCLI 91
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+A + ++ + A + + +G KP T+ ++ + K+ ++ + + I
Sbjct: 92 SALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVI 151
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + Y L++ R G EA+ V DM RG Y L + LC AG E+ L
Sbjct: 152 ANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLAL 211
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMKNFCSPNLVTCNIMVKAYLE 242
+ + P +S LI +GNIQ+A ++ + + +P++VT N ++ +
Sbjct: 212 FEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCK 271
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +EA+ LF ++ + + PD T+NT++ E +DD L+ R
Sbjct: 272 TGRAQEALNLFDKLQVEG------------ICPDAITYNTLISWHCKEGMFDDAHLLLSR 319
Query: 303 MLHHGL 308
+ G
Sbjct: 320 GVDSGF 325
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 119/285 (41%), Gaps = 50/285 (17%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDI YN ++ ++ A ++ +++ +G +P+ TY ++++ G+
Sbjct: 12 PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 71
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ K NA+ Y L++ L ++ K +A++ DM +G + L LC
Sbjct: 72 LDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCK 131
Query: 174 AGKCEEAL----------------------------MQMDKICKVANKPLV-------VS 198
K EEAL M + K+ N L ++
Sbjct: 132 VNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDIT 191
Query: 199 YTGLIQACLDSGNIQNAAYIF-NQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y GLI+A +GNI+ +F + M +PN ++CNI++ G + A++ ++M
Sbjct: 192 YNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMI 251
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYK 301
+GL PDI T+N++++ C + + L L K
Sbjct: 252 H-----------RGLT-PDIVTYNSLINGLCKTGRAQEALNLFDK 284
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 13/207 (6%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y L+ L ++G A + +M+ +G + Y L C G+ EEA
Sbjct: 12 PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 71
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+D++ V Y LI A +Q+A +F M + C P++ T N ++ +
Sbjct: 72 LDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCK 131
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
FEEA+ L+Q+M + VI + T+NT++ A + +
Sbjct: 132 VNKFEEALGLYQDMLLEG------------VIANTITYNTLIHAFLRRGAMQEALKLVND 179
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
ML G + + +I RAG +E
Sbjct: 180 MLFRGCPLDDITYNGLIKALCRAGNIE 206
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 21/156 (13%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLER----- 48
D + Y + L +AG+I++ + + M S L +TG ++
Sbjct: 188 DDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFL 247
Query: 49 ---WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
L PDIV YN+++N + + + A + +L+ +G P A TY ++
Sbjct: 248 RDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKE 307
Query: 106 GKYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREG 140
G ++ + R V +IPN + + +LV+ +EG
Sbjct: 308 GMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEG 343
>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Glycine max]
Length = 1113
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/337 (23%), Positives = 134/337 (39%), Gaps = 66/337 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y LG+AG I + + ++ +M D PD+V Y ++
Sbjct: 260 PNIYTYTICIRVLGRAGRIDDAYGILKTME---------------DEGCGPDVVTYTVLI 304
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+A + + A + +++ KP TY +M G V F+ +++ Y
Sbjct: 305 DALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYA 364
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y +LV L + GK D+A ++ M RGIV + Y L L + + +EAL
Sbjct: 365 PDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALEL 424
Query: 184 MDKICKVANKPLVVSYTGLI---------QACLDS------------------------- 209
+ + + P SY I + LD+
Sbjct: 425 FNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAE 484
Query: 210 -GNIQNAAYIFNQMKNFC--SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
G I+ A IFN + N C SP+ VT N+M+K Y + G ++A KL EM +
Sbjct: 485 MGRIREAKDIFNDIHN-CGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCE---- 539
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
PDI N+++D R D+ ++ R+
Sbjct: 540 --------PDIIVVNSLIDTLYKAGRVDEAWQMFGRL 568
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 134/310 (43%), Gaps = 29/310 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y + G++ I ELF++ + M K P+I+ +N ++
Sbjct: 821 PNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCK---------------PNIITHNIII 865
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+A V+ A + ++ P+ TYG ++ +L G+ + F ++
Sbjct: 866 SALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCK 925
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y +L+N + G + A + M + GI Y L CL G+ ++A+
Sbjct: 926 PNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHY 985
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+++ P VSY +I S ++ A +F++MKN SP L T N ++ +
Sbjct: 986 FEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGN 1045
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G+ ++A K+F+E+ + E P+++T+N ++ + D V+K+
Sbjct: 1046 AGMVDQAGKMFEEL----QFMGLE--------PNVFTYNALIRGHSKSGNKDRAFSVFKK 1093
Query: 303 MLHHGLHFNA 312
M+ G NA
Sbjct: 1094 MMIVGCSPNA 1103
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 113/258 (43%), Gaps = 16/258 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P A + +L + G I+E D+ + + + L PD V YN ++
Sbjct: 470 PSIAACNASLYSLAEMGRIREAKDIFNDIHNCG---------------LSPDSVTYNMMM 514
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ Q + A +L ++ +G +P +++ + G+ + ++ F +++ +
Sbjct: 515 KCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLA 574
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y +L+ L +EGK +A+ M+ G + + L CLC + AL
Sbjct: 575 PTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKM 634
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
++ + P V++Y +I + G A + ++QMK F SP+ VT ++ ++
Sbjct: 635 FCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMKKFLSPDHVTLYTLLPGVVKD 694
Query: 244 GLFEEAMKLFQEMAEDSN 261
G E+A+K+ E S
Sbjct: 695 GRVEDAIKIVMEFVHQSG 712
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 130/283 (45%), Gaps = 14/283 (4%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
YN ++ ++ + A V +++ +G KPS TY +M + + + +++
Sbjct: 195 YNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEME 254
Query: 120 KSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ PN Y + + L R G+ D+A ++ ME G Y L LC+AGK +
Sbjct: 255 TLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLD 314
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMV 237
+A K+ ++KP +V+Y L+ + G+++ +++M+ + +P++VT I+V
Sbjct: 315 KAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILV 374
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+A + G ++A + M ++P+++T+NT++ +R D+
Sbjct: 375 EALCKSGKVDQAFDMLDVMRVRG------------IVPNLHTYNTLISGLLNLRRLDEAL 422
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
++ M G+ A ++ I + G E T+E + +
Sbjct: 423 ELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKK 465
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 77/351 (21%), Positives = 150/351 (42%), Gaps = 41/351 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y + LG+ G + + D+ SM+ E P P+ V +NA+L
Sbjct: 575 PTVVTYNILITGLGKEGKLLKALDLFGSMK------------ESGCP---PNTVTFNALL 619
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + + A + ++ P TY ++ ++ G+ + F+ +++K P
Sbjct: 620 DCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMKKFLSP 679
Query: 125 NALAYKVLVNTLWREGKTDEAVSAV-EDMERRGIVGSAALYYDLARCLCSAGKCEEAL-- 181
+ + L+ + ++G+ ++A+ V E + + G+ S ++ +L C+ + EEA+
Sbjct: 680 DHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISF 739
Query: 182 ---MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--PNLVTCNIM 236
+ + IC+ N L LI+ +A +F++ P + N +
Sbjct: 740 AEGLVCNSICQDDNLILP-----LIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCL 794
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ L + E A+KLF EM K P+I+T+N +LDA KR D+L
Sbjct: 795 MDGLLGCNITEAALKLFVEM------------KNAGCCPNIFTYNLLLDAHGKSKRIDEL 842
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARADRITP 346
+Y ML G N H +I ++ + + L++ +E ++ TP
Sbjct: 843 FELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTP 893
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 112/275 (40%), Gaps = 23/275 (8%)
Query: 77 FWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP-NALAYKVLVNT 135
F ++ QL P Y ++E + G+ + F +QK I N Y +
Sbjct: 109 FKMVSQLPNIVHTPETCNY--MLEFLRVHGRVEDMAFVFDLMQKQVINRNPNTYLTIFKA 166
Query: 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL 195
L +G +A A+ M + G V +A Y L L G C+EAL ++ KP
Sbjct: 167 LSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPS 226
Query: 196 VVSYTGLIQAC---LDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMK 251
+ +Y+ L+ A D+G I + + +M+ PN+ T I ++ G ++A
Sbjct: 227 MKTYSALMVALGRRRDTGTIMD---LLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYG 283
Query: 252 LFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
+ + M ++ PD+ T+ ++DA A + D + +Y +M +
Sbjct: 284 ILKTMEDEGCG------------PDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPD 331
Query: 312 AKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
++ ++ G +E ++ W + AD P
Sbjct: 332 LVTYITLMSKFGNYGDLETVKRFWSEM-EADGYAP 365
>gi|147742776|gb|ABQ50556.1| hypothetical protein [Brassica rapa]
Length = 348
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 118/260 (45%), Gaps = 14/260 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P I+ ++ + +A + KQ+E + +Q++ QG S T +V+ K +
Sbjct: 79 PSIIDFSRLFSAVAKTKQYELVLSLCKQMELQGIAHSIYTLSIVINCFCRRRKLGFAFSV 138
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y P+ + + LVN L EG+ EAV V+ M + + L LC
Sbjct: 139 LGKILKLGYEPDTVTFSTLVNGLCLEGRVSEAVVIVDRMVEMKVRPNLVTLNTLVNGLCL 198
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVT 232
+ EA +D++ + +P +Y ++ SGN +A + +M++ P +VT
Sbjct: 199 KDQVSEAEALVDRMVEHGCQPDQFTYGPILNRICKSGNTVSALDLLRKMEDKKVKPQVVT 258
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N+++ + ++G ++EA+ LF EM + + D+ T+N+++ R
Sbjct: 259 YNMIIDSLCKNGNYDEALSLFNEMEREG------------IKADVITYNSLIGGFCNAGR 306
Query: 293 WDDLELVYKRMLHHGLHFNA 312
WDD + + M+ + N
Sbjct: 307 WDDGAQLLRDMITRNITPNV 326
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 95/211 (45%), Gaps = 16/211 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV + ++ L G + E ++D M + ++ P++V N ++
Sbjct: 149 PDTVTFSTLVNGLCLEGRVSEAVVIVDRMVEM---------------KVRPNLVTLNTLV 193
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
N + Q A ++ ++ + G +P TYG ++ + G + RK++ K
Sbjct: 194 NGLCLKDQVSEAEALVDRMVEHGCQPDQFTYGPILNRICKSGNTVSALDLLRKMEDKKVK 253
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y +++++L + G DEA+S +MER GI Y L C+AG+ ++
Sbjct: 254 PQVVTYNMIIDSLCKNGNYDEALSLFNEMEREGIKADVITYNSLIGGFCNAGRWDDGAQL 313
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQN 214
+ + P VV+++ LI + G + N
Sbjct: 314 LRDMITRNITPNVVTFSALIDCFVKEGKLIN 344
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 95/242 (39%), Gaps = 29/242 (11%)
Query: 113 EFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F+ + +S +P+ + + L + + + + + +S + ME +GI S + C
Sbjct: 67 DLFQSMIRSRPLPSIIDFSRLFSAVAKTKQYELVLSLCKQMELQGIAHSIYTLSIVINCF 126
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C K A + KI K+ +P V+++ L+ G + A I ++M PNL
Sbjct: 127 CRRRKLGFAFSVLGKILKLGYEPDTVTFSTLVNGLCLEGRVSEAVVIVDRMVEMKVRPNL 186
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDS-------------------------NHINR 265
VT N +V EA L M E + + +
Sbjct: 187 VTLNTLVNGLCLKDQVSEAEALVDRMVEHGCQPDQFTYGPILNRICKSGNTVSALDLLRK 246
Query: 266 EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRA 325
DKK V P + T+N ++D+ +D+ ++ M G+ + + +I A
Sbjct: 247 MEDKK--VKPQVVTYNMIIDSLCKNGNYDEALSLFNEMEREGIKADVITYNSLIGGFCNA 304
Query: 326 GK 327
G+
Sbjct: 305 GR 306
>gi|147819071|emb|CAN69810.1| hypothetical protein VITISV_043106 [Vitis vinifera]
Length = 847
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 134/301 (44%), Gaps = 18/301 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P IV YN +L++ + + + +L +++++G P+ TY +++ + G++
Sbjct: 536 IKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAK 595
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++ K+ + +A Y L+ + +G EA+S E+M +G + A Y L
Sbjct: 596 GLIGEMLKTGLKVSAYTYNPLIYGYFNKGLLAEALSLQEEMVLKGASPTVATYNSFIYGL 655
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
C G+ +A+ Q+ + P VVSY LI GN+ A +F+++++ + P +
Sbjct: 656 CKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTI 715
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N ++ G E A +L EM + + PDI T+ +++
Sbjct: 716 VTYNTLLDGLCRQGELEVAQQLKVEMINEG------------IAPDIVTYTILVNGSCKM 763
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE-LLEITWEHLARADRITPPAL 349
+ + MLH GL ++ + I+ + G + E LA+ PP L
Sbjct: 764 GSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKG---FPPDL 820
Query: 350 I 350
I
Sbjct: 821 I 821
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 18/184 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y ++ + G++ + F + D +RS+ L P IV YN +L
Sbjct: 678 PDVVSYNTLIYGYCRLGNLMKAFLLFDELRSI---------------YLFPTIVTYNTLL 722
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ R+ + E A + ++ +G P TY +++ G ++ EFF ++ +
Sbjct: 723 DGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLE 782
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA--L 181
++ AY + + G T A S E+M +G +Y + LC G EEA L
Sbjct: 783 LDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASEL 842
Query: 182 MQMD 185
+Q D
Sbjct: 843 LQKD 846
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 67/319 (21%), Positives = 119/319 (37%), Gaps = 34/319 (10%)
Query: 29 VIDSMRSLPKKKFKTGTLERW---DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ 85
V+ S R+ P+ + L RW P V+ A+L + A+WV++++
Sbjct: 393 VLSSFRTSPRMALR---LFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWVMERVIN 449
Query: 86 Q-----------GQKPSATTYGLVMEVMLACGKYNLVYE---FFRKVQKSYI-PNALAYK 130
G S + ++ ++ K ++V + F K+ KS + P+
Sbjct: 450 ANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCN 509
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
++ L + +AV M GI + Y L C GK ++ L + ++ +
Sbjct: 510 RILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRR 569
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEA 249
P V+Y LI G + A + +M K + T N ++ Y GL EA
Sbjct: 570 GCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGLLAEA 629
Query: 250 MKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH 309
+ L +EM KG P + T+N+ + R D ML + L
Sbjct: 630 LSLQEEMV-----------LKG-ASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLL 677
Query: 310 FNAKRHLRMILDASRAGKV 328
+ + +I R G +
Sbjct: 678 PDVVSYNTLIYGYCRLGNL 696
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 79/204 (38%), Gaps = 4/204 (1%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P + YN+ + + + A L + P +Y ++ G +
Sbjct: 643 PTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLL 702
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F +++ Y+ P + Y L++ L R+G+ + A +M GI Y L C
Sbjct: 703 FDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCK 762
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLV 231
G A D++ + +Y I L G+ A + +M K F P+L+
Sbjct: 763 MGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGF-PPDLI 821
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQE 255
N++V + G EEA +L Q+
Sbjct: 822 IYNVVVDGLCKLGNLEEASELLQK 845
>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 527
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/306 (21%), Positives = 131/306 (42%), Gaps = 29/306 (9%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ + Y ++ AG + E F +++ M + P++ Y +
Sbjct: 182 FPNVITYSTLIYGFCLAGQLMEAFGLLNEM---------------ILKNINPNVYTYTIL 226
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSY 122
++A + + + A +L + ++G KP+ +Y +M+ G+ + F VQK
Sbjct: 227 MDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGV 286
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN +Y ++++ L + + DEA++ + ++ + +V + Y L C G+ AL
Sbjct: 287 NPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALD 346
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYL 241
+ ++ VV+YT L+ A + N+ A +F +MK PN T ++
Sbjct: 347 LLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLC 406
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G + A KLFQ + IN ++T+N M+ E D+ +
Sbjct: 407 KGGRHKNAQKLFQHLLVKGCRIN------------VWTYNVMISGLCKEGMLDEALAMKS 454
Query: 302 RMLHHG 307
+M +G
Sbjct: 455 KMEENG 460
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/320 (21%), Positives = 144/320 (45%), Gaps = 20/320 (6%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+P+ + N ++ + + + + ++ QG + +Y ++ + G+ +
Sbjct: 77 QPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALK 136
Query: 114 FFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R ++ +S PN + Y +++ L ++ +EA +M+ RGI + Y L C
Sbjct: 137 LLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFC 196
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
AG+ EA ++++ P V +YT L+ A G ++ A + M K PN+V
Sbjct: 197 LAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVV 256
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
+ N ++ Y G + A ++F M + KG V P++Y++N M+D K
Sbjct: 257 SYNTLMDGYCLIGEVQNAKQMFHTMVQ-----------KG-VNPNVYSYNIMIDRLCKSK 304
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPP 347
R D+ + + +LH + N + +I + G++ +LL+ + AD +T
Sbjct: 305 RVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYT 364
Query: 348 ALIKERFCNRLENKDYGSAI 367
+L+ + C +N D +A+
Sbjct: 365 SLL-DALCKN-QNLDKATAL 382
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/292 (20%), Positives = 123/292 (42%), Gaps = 16/292 (5%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D P++V+YN +++ + K A+ + ++ +G P+ TY ++ G+
Sbjct: 143 DRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLM 202
Query: 110 LVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
+ + + K+ PN Y +L++ L +EGK EA + + M + G+ + Y L
Sbjct: 203 EAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLM 262
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFC 226
C G+ + A + + P V SY +I S + A + ++ KN
Sbjct: 263 DGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMV 322
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
PN VT + ++ + + G A+ L +EM D+ T+ ++LDA
Sbjct: 323 -PNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQP------------ADVVTYTSLLDA 369
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
+ D ++ +M G+ N + +I + G+ + + ++HL
Sbjct: 370 LCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHL 421
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 96/235 (40%), Gaps = 49/235 (20%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R P I+ +N ++ + V+ K + A + +Q++ +G +P T +++ G+
Sbjct: 5 RDTPPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFS 64
Query: 112 YEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ K+ K Y PN + +NTL +
Sbjct: 65 FTVLGKILKLGYQPNTIT----LNTLMKG------------------------------- 89
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PN 229
LC G+ +++L DK+ + VSY L+ G ++A + +++ + PN
Sbjct: 90 LCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRPN 149
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
+V N ++ + L EA L+ EM D +G + P++ T++T++
Sbjct: 150 VVMYNTIIDGLCKDKLVNEAYDLYSEM-----------DARG-IFPNVITYSTLI 192
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/177 (19%), Positives = 77/177 (43%), Gaps = 1/177 (0%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + P+ V Y+++++ + + A +L+++ +GQ TY +++ +
Sbjct: 315 EVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQ 374
Query: 107 KYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ F K+++ I PN Y L++ L + G+ A + + +G + Y
Sbjct: 375 NLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYN 434
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+ LC G +EAL K+ + P V++ +I++ + A + ++M
Sbjct: 435 VMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEM 491
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/207 (17%), Positives = 86/207 (41%), Gaps = 15/207 (7%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + + +V +L + A+S + M+ +GI L C C G+ +
Sbjct: 8 PPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTV 67
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
+ KI K+ +P ++ L++ G ++ + + +++ + F + V+ ++
Sbjct: 68 LGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGF-QMDQVSYATLLNGLC 126
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G A+KL + + + S P++ +NT++D +K ++ +Y
Sbjct: 127 KIGETRSALKLLRMIEDRSTR------------PNVVMYNTIIDGLCKDKLVNEAYDLYS 174
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKV 328
M G+ N + +I AG++
Sbjct: 175 EMDARGIFPNVITYSTLIYGFCLAGQL 201
>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
[Oryza sativa Japonica Group]
gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 793
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/359 (22%), Positives = 141/359 (39%), Gaps = 64/359 (17%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D A + LG+ G + D++D M P + D+ Y VL+
Sbjct: 143 DAAALEMVVRALGREGQHDVVCDLLDEMPLPPGSRL--------------DVRAYTTVLH 188
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV------------------------ 101
A R ++E A + +L++QG P+ TY +V++V
Sbjct: 189 ALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVE 248
Query: 102 ---------MLACGKYNLVYE---FFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSA 148
+ ACG+ L+ + FF ++ + ++P + Y L+ + G EA+
Sbjct: 249 PDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRV 308
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+++ME G A Y +LA AG EEA +D + P +Y ++ A +
Sbjct: 309 LKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYAN 368
Query: 209 SGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
G + A +F++M KN PN+ T N++ + F +++ +EM+ NR
Sbjct: 369 VGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNR-- 426
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
T+NTML C D + V M G+ + + +I R G
Sbjct: 427 ----------VTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCG 475
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/305 (20%), Positives = 125/305 (40%), Gaps = 25/305 (8%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+EPD + V+ AC R + A + LK +G P TY +++V G Y
Sbjct: 247 VEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEAL 306
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++++ S P+A+ Y L T R G +EA ++ M +G++ + Y +
Sbjct: 307 RVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAY 366
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
+ G+ +EAL D++ K P V +Y + + +M ++ C+PN
Sbjct: 367 ANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNR 426
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE---------------------YDK 269
VT N M+ + G+ + ++ M ++R+ YD+
Sbjct: 427 VTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDE 486
Query: 270 --KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
P + T+N +L+ + + W + + +ML +G N + + ++ ++ G
Sbjct: 487 MISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGN 546
Query: 328 VELLE 332
+E
Sbjct: 547 AAGIE 551
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 126/322 (39%), Gaps = 36/322 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS----------------LPKKKFKTGTLER 48
P+T Y ++ G + E + D M+ L KK T LE
Sbjct: 354 PNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEM 413
Query: 49 WD----PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ P+ V +N +L C +R + VL +K G + S TY ++
Sbjct: 414 LEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGR 473
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
CG ++ + + + + P Y L+N L R+G A S V M + G +
Sbjct: 474 CGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQS 533
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANK-PLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y L +C G + ++K V P V L+ A ++ F ++
Sbjct: 534 YSLLLQCYAKGGNA-AGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEV 592
Query: 223 K-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
K P+LV N M+ Y ++GL+ +A ++F + K+ + PD+ T+N
Sbjct: 593 KAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSI------------KQSGLSPDLITYN 640
Query: 282 TMLDACAAEKRWDDLELVYKRM 303
+++D A + E + K++
Sbjct: 641 SLMDMYAKSNESWEAEKILKQL 662
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 114/256 (44%), Gaps = 14/256 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P + YNA+LN R+ W A ++ ++ + G KP+ +Y L+++ G +
Sbjct: 494 PCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESI 553
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++V I P+ + + LV ++ + + A ++++ +G ++ +
Sbjct: 554 EKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAK 613
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
G +A D I + P +++Y L+ S A I Q+K+ P++V+
Sbjct: 614 NGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVS 673
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ + + GL +EA ++ EM D + P + T++T++ A+ +
Sbjct: 674 YNTVINGFCKQGLIKEAQRILSEMIADG------------MAPCVVTYHTLVGGYASLEM 721
Query: 293 WDDLELVYKRMLHHGL 308
+++ V M+HH L
Sbjct: 722 FNEAREVVNYMIHHNL 737
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 98/242 (40%), Gaps = 17/242 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y +A T +AG +E +D+M S L P+ YN V+
Sbjct: 319 PDAVTYNELAGTYARAGFFEEAAKCLDTMTS---------------KGLLPNTFTYNTVM 363
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-I 123
A + + A + ++K+ G P+ TY L+ ++ ++ + E ++ +S
Sbjct: 364 TAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCT 423
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + ++ + G D + M+ G+ S Y L G A
Sbjct: 424 PNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKM 483
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
D++ P + +Y L+ G+ A I ++M KN PN + +++++ Y +
Sbjct: 484 YDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAK 543
Query: 243 HG 244
G
Sbjct: 544 GG 545
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD+V++N++L + + A + +KQ G P TY +M++ + +
Sbjct: 598 KPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEK 657
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++++ S + P+ ++Y ++N ++G EA + +M G+ Y+ L
Sbjct: 658 ILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYA 717
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
S EA ++ + KP+ ++Y ++ +
Sbjct: 718 SLEMFNEAREVVNYMIHHNLKPMELTYRRVVDS 750
>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 644
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 119/258 (46%), Gaps = 17/258 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ ++ ++ L + G + + DV+D M F++G +EPD+V Y A++
Sbjct: 282 PNAISLTTVVDALCKEGMVAQAHDVVDMM-------FQSG--------VEPDVVTYTALI 326
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN-LVYEFFRKVQKSYI 123
+ R + + A V + +G P+ +Y ++ + + +Y F ++ I
Sbjct: 327 DGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLI 386
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L++ L G+ +A++ +M G + Y L LC ++A+
Sbjct: 387 PNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMAL 446
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+ I P + YT +I +G +++A +F+ + + PN+ T NIM +
Sbjct: 447 LKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCK 506
Query: 243 HGLFEEAMKLFQEMAEDS 260
GL +EA KLF EM E++
Sbjct: 507 RGLLDEATKLFMEMDENA 524
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 129/306 (42%), Gaps = 31/306 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT ++ ++ L G I E + D M W+ +PD+V+Y ++
Sbjct: 142 PDTASFTTLIKGLCLEGQIGEALHLFDKMI--------------WEG-FQPDVVIYATLI 186
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + A +L+ +++ +P YG ++ + + + F + + K
Sbjct: 187 NGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGIS 246
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + LV L G+ + + +M I+ +A + LC G +A
Sbjct: 247 PNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDV 306
Query: 184 MDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+D + + +P VV+YT LI CL S + A +F+ M C+PN+ + N ++ Y
Sbjct: 307 VDMMFQSGVEPDVVTYTALIDGHCLRS-EMDEAVKVFDMMVHKGCAPNVFSYNTLINGYC 365
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ ++AM LF+EM +IP+ T+NT++ R D +++
Sbjct: 366 KIERMDKAMYLFEEMCRQK------------LIPNTVTYNTLIHGLCHVGRLQDAIALFR 413
Query: 302 RMLHHG 307
M+ G
Sbjct: 414 EMVACG 419
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 74/346 (21%), Positives = 138/346 (39%), Gaps = 66/346 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ L + GH I +RS+ K +PD+VVY ++
Sbjct: 177 PDVVIYATLINGLCKTGHTSA---AIRLLRSMEKGN------------CQPDVVVYGTLI 221
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
++ + +Q AF + ++ +G P+ T ++ + G++ V ++ S I
Sbjct: 222 HSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIM 281
Query: 124 PNALAYKVLVNTLWREG-----------------------------------KTDEAVSA 148
PNA++ +V+ L +EG + DEAV
Sbjct: 282 PNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKV 341
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+ M +G + Y L C + ++A+ +++C+ P V+Y LI
Sbjct: 342 FDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCH 401
Query: 209 SGNIQNAAYIFNQMKNFCS--PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
G +Q+A +F +M C P+LVT I++ ++ ++AM L + + E SN
Sbjct: 402 VGRLQDAIALFREMVA-CGQIPDLVTYRILLDYLCKNCHLDKAMALLKAI-EGSN----- 454
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
+ PDI + ++D +D ++ + GL N
Sbjct: 455 ------LDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNV 494
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/254 (19%), Positives = 106/254 (41%), Gaps = 14/254 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
++ N ++N+ + AF VL ++ + G +P ++ +++ + G+ F
Sbjct: 108 NVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLF 167
Query: 116 RK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
K + + + P+ + Y L+N L + G T A+ + ME+ +Y L LC
Sbjct: 168 DKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKD 227
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
+ +A ++ P +V+ L+ A + G ++ + N+M + PN ++
Sbjct: 228 RQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISL 287
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
+V A + G+ +A + M + V PD+ T+ ++D
Sbjct: 288 TTVVDALCKEGMVAQAHDVVDMMFQSG------------VEPDVVTYTALIDGHCLRSEM 335
Query: 294 DDLELVYKRMLHHG 307
D+ V+ M+H G
Sbjct: 336 DEAVKVFDMMVHKG 349
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/278 (17%), Positives = 117/278 (42%), Gaps = 14/278 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD + ++ Q A + ++ +G +P Y ++ + G +
Sbjct: 141 QPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIR 200
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R ++K P+ + Y L+++L ++ + +A + +M +GI + L LC
Sbjct: 201 LLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALC 260
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
+ G+ + ++++ P +S T ++ A G + A + + M ++ P++V
Sbjct: 261 NLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVV 320
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T ++ + +EA+K+F M KG P+++++NT+++ +
Sbjct: 321 TYTALIDGHCLRSEMDEAVKVFDMMVH-----------KGCA-PNVFSYNTLINGYCKIE 368
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
R D +++ M L N + +I G+++
Sbjct: 369 RMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQ 406
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/219 (18%), Positives = 84/219 (38%), Gaps = 16/219 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+TV Y ++ L G +++ +L ++ G + PD+V Y +L
Sbjct: 387 PNTVTYNTLIHGLCHVGRLQDAI-------ALFREMVACGQI--------PDLVTYRILL 431
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ + + A +L+ ++ P Y +V++ M G+ + F + K
Sbjct: 432 DYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLK 491
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y ++ + L + G DEA +M+ Y + + + A+
Sbjct: 492 PNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQL 551
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
++++ V + T L+ D G Q+ A+ M
Sbjct: 552 LEEMLARGFSCDVSTTTLLVGMLSDDGLDQSEAHKLEDM 590
>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
Length = 793
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/359 (22%), Positives = 141/359 (39%), Gaps = 64/359 (17%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D A + LG+ G + D++D M P + D+ Y VL+
Sbjct: 143 DAAALEMVVRALGREGQHDVVCDLLDEMPLPPGSRL--------------DVRAYTTVLH 188
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV------------------------ 101
A R ++E A + +L++QG P+ TY +V++V
Sbjct: 189 ALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVE 248
Query: 102 ---------MLACGKYNLVYE---FFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSA 148
+ ACG+ L+ + FF ++ + ++P + Y L+ + G EA+
Sbjct: 249 PDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRV 308
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+++ME G A Y +LA AG EEA +D + P +Y ++ A +
Sbjct: 309 LKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYAN 368
Query: 209 SGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
G + A +F++M KN PN+ T N++ + F +++ +EM+ NR
Sbjct: 369 VGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNR-- 426
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
T+NTML C D + V M G+ + + +I R G
Sbjct: 427 ----------VTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCG 475
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/305 (20%), Positives = 125/305 (40%), Gaps = 25/305 (8%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+EPD + V+ AC R + A + LK +G P TY +++V G Y
Sbjct: 247 VEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEAL 306
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++++ S P+A+ Y L T R G +EA ++ M +G++ + Y +
Sbjct: 307 RVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAY 366
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
+ G+ +EAL D++ K P V +Y + + +M ++ C+PN
Sbjct: 367 ANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNR 426
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE---------------------YDK 269
VT N M+ + G+ + ++ M ++R+ YD+
Sbjct: 427 VTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDE 486
Query: 270 --KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
P + T+N +L+ + + W + + +ML +G N + + ++ ++ G
Sbjct: 487 MISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGN 546
Query: 328 VELLE 332
+E
Sbjct: 547 AAGIE 551
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 126/322 (39%), Gaps = 36/322 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS----------------LPKKKFKTGTLER 48
P+T Y ++ G + E + D M+ L KK T LE
Sbjct: 354 PNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEM 413
Query: 49 WD----PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ P+ V +N +L C +R + VL +K G + S TY ++
Sbjct: 414 LEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGR 473
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
CG ++ + + + + P Y L+N L R+G A S V M + G +
Sbjct: 474 CGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQS 533
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANK-PLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y L +C G + ++K V P V L+ A ++ F ++
Sbjct: 534 YSLLLQCYAKGGNA-AGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEV 592
Query: 223 K-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
K P+LV N M+ Y ++GL+ +A ++F + K+ + PD+ T+N
Sbjct: 593 KAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSI------------KQSGLSPDLITYN 640
Query: 282 TMLDACAAEKRWDDLELVYKRM 303
+++D A + E + K++
Sbjct: 641 SLMDMYAKSNESWEAEKILKQL 662
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 114/256 (44%), Gaps = 14/256 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P + YNA+LN R+ W A ++ ++ + G KP+ +Y L+++ G +
Sbjct: 494 PCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESI 553
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++V I P+ + + LV ++ + + A ++++ +G ++ +
Sbjct: 554 EKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAK 613
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
G +A D I + P +++Y L+ S A I Q+K+ P++V+
Sbjct: 614 NGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVS 673
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ + + GL +EA ++ EM D + P + T++T++ A+ +
Sbjct: 674 YNTVINGFCKQGLIKEAQRILSEMIADG------------MAPCVVTYHTLVGGYASLEM 721
Query: 293 WDDLELVYKRMLHHGL 308
+++ V M+HH L
Sbjct: 722 FNEAREVVNYMIHHNL 737
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 98/242 (40%), Gaps = 17/242 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y +A T +AG +E +D+M S L P+ YN V+
Sbjct: 319 PDAVTYNELAGTYARAGFFEEAAKCLDTMTS---------------KGLLPNTFTYNTVM 363
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-I 123
A + + A + ++K+ G P+ TY L+ ++ ++ + E ++ +S
Sbjct: 364 TAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCT 423
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + ++ + G D + M+ G+ S Y L G A
Sbjct: 424 PNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKM 483
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
D++ P + +Y L+ G+ A I ++M KN PN + +++++ Y +
Sbjct: 484 YDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAK 543
Query: 243 HG 244
G
Sbjct: 544 GG 545
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD+V++N++L + + A + +KQ G P TY +M++ + +
Sbjct: 598 KPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEK 657
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++++ S + P+ ++Y ++N ++G EA + +M G+ Y+ L
Sbjct: 658 ILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYA 717
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
S EA ++ + KP+ ++Y ++ +
Sbjct: 718 SLEMFNEAREVVNYMIHHNLKPMELTYRRVVDS 750
>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 120/265 (45%), Gaps = 17/265 (6%)
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
TL+R +PD+V++ +++ R + E A +L+++ G P T +M +
Sbjct: 101 TLKRG---FKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSLMRGYCS 157
Query: 105 CGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK + V + F V K P+ +Y + +N + K DEA+ ++M RG+V +A
Sbjct: 158 QGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVT 217
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y L + LC A + +A + K+C P +++Y+ L+ GN+ +F +M
Sbjct: 218 YNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQ 277
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ P+LV I++ ++A ++ + + + PD++T+
Sbjct: 278 RRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEG------------LKPDVHTYTA 325
Query: 283 MLDACAAEKRWDDLELVYKRMLHHG 307
++D E + ++++M G
Sbjct: 326 LVDGLCREGSIIEALRLFRKMEEDG 350
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 104/208 (50%), Gaps = 2/208 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD+ Y+ +N + ++ + A + ++ +G P+A TY +++ + +
Sbjct: 176 LKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQ 235
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
FRK+ + P+ LAY L++ ++G DE + ++M+RR + +Y + +
Sbjct: 236 VLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGM 295
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C + K ++A + ++ KP V +YT L+ G+I A +F +M+ + C P
Sbjct: 296 CRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGS 355
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
+ N++++ L+H ++L EMA+
Sbjct: 356 CSYNVLLQGCLQHNDTSTVVQLIHEMAD 383
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 118/257 (45%), Gaps = 14/257 (5%)
Query: 49 WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY 108
D +P I+ +N +L++ VR K++E + ++++ +G K + T +++
Sbjct: 32 LDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSILINCFCFLHHV 91
Query: 109 NLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ + F K +++ + P+ + + L++ + R GKT+ A +++M G V L
Sbjct: 92 DYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSL 151
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FC 226
R CS GK ++ + KP V SY+ I I A +F++M +
Sbjct: 152 MRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGV 211
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
PN VT N ++KA + +A LF++M + PDI ++T+LD
Sbjct: 212 VPNAVTYNTLIKALCQALRPRDAQVLFRKMCACG------------LSPDILAYSTLLDG 259
Query: 287 CAAEKRWDDLELVYKRM 303
+ D++ ++++ M
Sbjct: 260 FCKQGNLDEMLVLFQEM 276
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 114/262 (43%), Gaps = 28/262 (10%)
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F R + ++ P + + L++++ R K + VS ++ME RGI + L C C
Sbjct: 28 FNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSILINCFCF 87
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
+ K K KP VV +T LI G + AA + +M C P++VT
Sbjct: 88 LHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVT 147
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMA------------------------EDSNHINREYD 268
CN +++ Y G ++ K+F M +++ + E
Sbjct: 148 CNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMS 207
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+G V+P+ T+NT++ A R D ++++++M GL + + ++ + G +
Sbjct: 208 HRG-VVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNL 266
Query: 329 ELLEITWEHLARADRITPPALI 350
+ + + ++ + R R+ P L+
Sbjct: 267 DEMLVLFQEMQR--RLVKPDLV 286
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 18/160 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM-RSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
PD +AY ++ + G++ E+ + M R L K PD+VVY +
Sbjct: 248 PDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVK----------------PDLVVYTII 291
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SY 122
+N R ++ + A VL +L +G KP TY +++ + G FRK+++
Sbjct: 292 INGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGC 351
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+P + +Y VL+ + T V + +M RG A
Sbjct: 352 MPGSCSYNVLLQGCLQHNDTSTVVQLIHEMADRGFYADAV 391
>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 528
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/302 (20%), Positives = 127/302 (42%), Gaps = 30/302 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +A+ + L + E DS++ + EPD++VY ++
Sbjct: 210 PDKIAFSILISILCRKRRATEAQSFFDSLKD----------------KFEPDVIVYTNLV 253
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
R A V ++K G P+ TY +V++ + CG+ ++ F + +
Sbjct: 254 RGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRAHDVFAEMLDVGCE 313
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN++ + L+ + G+T++ + M+R G Y L C G +EAL
Sbjct: 314 PNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESHCKDGNLDEALKV 373
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
++ + K P ++ GL + ++ A ++ +MK C N VT NI+++ +++
Sbjct: 374 LNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAKMKELKCKANTVTYNILMRMFVD 433
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ +KL +EM ED V P++ T+ ++ W++ ++
Sbjct: 434 TKSTDMVLKLKKEMDEDD------------VEPNVNTYCVLIAMYCGMGHWNNAYKFFRE 481
Query: 303 ML 304
M+
Sbjct: 482 MV 483
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/252 (20%), Positives = 108/252 (42%), Gaps = 13/252 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+E I ++ ++ VR A +++ KP + +++ ++ +
Sbjct: 173 VEISIETFSILIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATEAQ 232
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
FF ++ + P+ + Y LV R G EA +M+ G + + Y + LC
Sbjct: 233 SFFDSLKDKFEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALC 292
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLV 231
G+ A ++ V +P +++ L++ + +G + ++NQMK C P+ V
Sbjct: 293 RCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTV 352
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N +++++ + G +EA+K+ M KKG P+ TFN + + A +
Sbjct: 353 TYNFLIESHCKDGNLDEALKVLNSMV-----------KKGCS-PNASTFNGLFGSIAKLR 400
Query: 292 RWDDLELVYKRM 303
+ +Y +M
Sbjct: 401 DVNGAHRLYAKM 412
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 118/255 (46%), Gaps = 15/255 (5%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG-KYNLVYEFFRKV 118
YN +++ + + ++ + V+ +K + + S T+ +++ + G V+ F R
Sbjct: 145 YNEMIDLAGKVRNFDLGWQVIDLMKARNVEISIETFSILIRRYVRAGLASEAVHAFNRME 204
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ P+ +A+ +L++ L R+ + EA S + ++ + +Y +L R C AG
Sbjct: 205 DYNCKPDKIAFSILISILCRKRRATEAQSFFDSLKDK-FEPDVIVYTNLVRGWCRAGNIP 263
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
EA ++ P V +YT +I A G I A +F +M + C PN +T N ++
Sbjct: 264 EAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLL 323
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ +++ G E+ ++++ +M K+ PD T+N ++++ + D+
Sbjct: 324 RVHVKAGRTEKVLQVYNQM------------KRMGCPPDTVTYNFLIESHCKDGNLDEAL 371
Query: 298 LVYKRMLHHGLHFNA 312
V M+ G NA
Sbjct: 372 KVLNSMVKKGCSPNA 386
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 77/179 (43%), Gaps = 22/179 (12%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSM----------------RSLPKKKFKTG 44
M PDTV Y + + + G++ E V++SM S+ K + G
Sbjct: 345 MGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNG 404
Query: 45 TLERW----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
+ + + + + V YN ++ V K + + +++ + +P+ TY +++
Sbjct: 405 AHRLYAKMKELKCKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTYCVLIA 464
Query: 101 VMLACGKYNLVYEFFRKV--QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
+ G +N Y+FFR++ +K P+ Y+ ++ L + G+ + V M RG
Sbjct: 465 MYCGMGHWNNAYKFFREMVEEKCLKPSLPVYEKVLQQLRKAGQLKKHEELVAVMVDRGF 523
>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 102/217 (47%), Gaps = 4/217 (1%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG-QKPSATTYGLVMEVMLACGKYNLV 111
LEP+ ++N ++ + + AF V++++K+ P+ TY ++ + G+
Sbjct: 196 LEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEA 255
Query: 112 YEFFRKV--QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
E F ++ + +P+AL Y L+N K D A+ +E M++ G + Y L
Sbjct: 256 IELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMN 315
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSP 228
C G+ EEA D++ + KP V YT LI +G + A + M+ N C
Sbjct: 316 GFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRA 375
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
+ VT N+++ G FEEA + + + + ++N+
Sbjct: 376 DTVTFNVILGGLCREGRFEEARGMLERLPYEGVYLNK 412
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 107/250 (42%), Gaps = 16/250 (6%)
Query: 3 SYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNA 62
SYP+ + Y ++ L +G +KE ++ + M S ++ PD + YNA
Sbjct: 232 SYPNLITYSTLINGLCGSGRLKEAIELFEEMVS--------------KDQILPDALTYNA 277
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY 122
++N ++ + A +++ +K+ G P+ Y +M G+ E F +++
Sbjct: 278 LINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLG 337
Query: 123 I-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+ P+ + Y L+N R G+ DEA+ ++DM + + LC G+ EEA
Sbjct: 338 LKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADTVTFNVILGGLCREGRFEEAR 397
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
++++ SY ++ + G +Q A + M P+ T N ++
Sbjct: 398 GMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHL 457
Query: 241 LEHGLFEEAM 250
E G +A+
Sbjct: 458 CEAGKVGDAV 467
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 96/202 (47%), Gaps = 18/202 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y ++ + G ++E +V D M+SL L+PD V Y ++
Sbjct: 305 PNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLG---------------LKPDTVGYTTLI 349
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV--QKSY 122
N R + + A +L+ +++ + T+ +++ + G++ ++ + Y
Sbjct: 350 NFFCRAGRVDEAMELLKDMRENKCRADTVTFNVILGGLCREGRFEEARGMLERLPYEGVY 409
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+ N +Y++++N+L REG+ +A V M RG++ A +L LC AGK +A+M
Sbjct: 410 L-NKASYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDAVM 468
Query: 183 QMDKICKVANKPLVVSYTGLIQ 204
+ + ++ KP S+ L++
Sbjct: 469 ALLGLLELGFKPEPNSWALLVE 490
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 68/345 (19%), Positives = 132/345 (38%), Gaps = 64/345 (18%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQL-KQQGQKPSATTYGLVMEVMLACGKY 108
+PR +P + + + +N R + A + ++ +Q+G + TY ++ + K+
Sbjct: 50 EPRKKPKFISHESAINLIKRETDPQRALEIFNRVAEQRGFSHNNATYATILHKLAKSKKF 109
Query: 109 NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER-RGIVGSAALYYDL 167
+ Q +Y + +N + K VE + R IV +
Sbjct: 110 QAIDAVLH--QMTYETCKFHEGIFLNLMKHFSKLSLHERVVEMFDAIRPIVREKPSLKAI 167
Query: 168 ARCLCSAGKCEEA------LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
+ CL + + L+ K + +P + L++ +G+I +A + +
Sbjct: 168 STCLNLLVESNQVDLTRKFLLNSKKSLNL--EPNTCIFNILVKHHCKNGDIDSAFEVVEE 225
Query: 222 MK--NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
MK + PNL+T + ++ G +EA++LF+EM K ++PD T
Sbjct: 226 MKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMV-----------SKDQILPDALT 274
Query: 280 FNTMLDA-CAAEK----------------------------------RWDDLELVYKRML 304
+N +++ C EK R ++ + V+ M
Sbjct: 275 YNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMK 334
Query: 305 HHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRIT 345
GL + + +I RAG+V ELL+ E+ RAD +T
Sbjct: 335 SLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADTVT 379
>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
Length = 1269
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 136/302 (45%), Gaps = 25/302 (8%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
+ V YN ++ R E AF + ++ G P TYG ++ + + N
Sbjct: 256 NTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALL 315
Query: 116 RKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
++ + + PN + Y L++ REG DEA +++M G+ + Y +L R LC
Sbjct: 316 DEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKM 375
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
G+ + A + + ++ + +++P ++Y +I+ + ++A + ++M+N SPN+ T
Sbjct: 376 GQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTY 435
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN------------RE---------YDK--K 270
+IM+ + G E+A L +EM N RE +DK K
Sbjct: 436 SIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTK 495
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
V+PD+Y +N+++ + R ++ + +M GL N + +I + G +E
Sbjct: 496 VNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLES 555
Query: 331 LE 332
E
Sbjct: 556 AE 557
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 77/355 (21%), Positives = 156/355 (43%), Gaps = 34/355 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMR--SLPKKKFKTGTL----------------- 46
+TV Y + L ++G ++E F M L F G L
Sbjct: 256 NTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALL 315
Query: 47 -ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
E L+P++VVY +++ +R + AF +++++ G +P+ TY ++ +
Sbjct: 316 DEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKM 375
Query: 106 GKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G+ + ++ V+ S+ P+ + Y +++ +R +A + +ME GI + Y
Sbjct: 376 GQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTY 435
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-K 223
+ LC +G+ E+A ++++ KP Y LI GN+ A IF++M K
Sbjct: 436 SIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTK 495
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
P+L N ++ + G EE+ K F +M E +GL +P+ +T++ +
Sbjct: 496 VNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQE-----------RGL-LPNEFTYSGL 543
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
+ + E + +RML GL N ++ ++ ++ +E + T++ +
Sbjct: 544 IHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSM 598
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/367 (23%), Positives = 149/367 (40%), Gaps = 45/367 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKF----------KTGTLER---- 48
PD Y S+ L + G ++E M R L +F K G LE
Sbjct: 500 PDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQL 559
Query: 49 ----WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
D L+P+ V+Y +L + + E + + QG YG+++ + +
Sbjct: 560 VQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSS 619
Query: 105 CGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + ++K+ +P+ Y L++ L + ++A +++M ++G+ +
Sbjct: 620 SGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVC 679
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y L LC +G A + I P V+YT LI G+I NA Y++N+M
Sbjct: 680 YNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEML 739
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+P+ +++ G E+AM L +EM + I +FN
Sbjct: 740 ATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGH-------------ASISSFNN 786
Query: 283 MLDA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK--------VELLEI 333
++D C K + L+L++ ++ GL NA +I S AGK VEL +
Sbjct: 787 LVDGFCKRGKMQETLKLLHV-IMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQK 845
Query: 334 TWEHLAR 340
T E AR
Sbjct: 846 TSESAAR 852
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 127/302 (42%), Gaps = 26/302 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
P+ V Y ++ + G+ E F +I M +L + K G ++R
Sbjct: 325 PNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLL 384
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L+ PD + YN ++ R + AF +L +++ G P+ TY +++ +
Sbjct: 385 LKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQ 444
Query: 105 CGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ + ++ K PNA Y L++ REG A + M + ++
Sbjct: 445 SGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYC 504
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y L L G+ EE+ ++ + P +Y+GLI L +G++++A + +M
Sbjct: 505 YNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRML 564
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI-NREYDKKGLVIPDIYTFN 281
PN V ++++Y + E+ F+ M + + NR Y G++I ++ +
Sbjct: 565 DTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIY---GILIHNLSSSG 621
Query: 282 TM 283
M
Sbjct: 622 NM 623
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 85/247 (34%), Gaps = 59/247 (23%)
Query: 143 DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL-------------------MQ 183
D A + +M RG + Y L LC +G EEA
Sbjct: 239 DTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGAL 298
Query: 184 MDKICKVAN----------------KPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
++ +CK KP VV Y LI + GN A + +M
Sbjct: 299 INGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGV 358
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN------------REYDKKGL-- 272
PN +T + +V+ + G + A L ++M DS+ + R + KK
Sbjct: 359 QPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFR 418
Query: 273 ---------VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDAS 323
+ P++YT++ M+ + + + M GL NA + +I
Sbjct: 419 LLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYC 478
Query: 324 RAGKVEL 330
R G V L
Sbjct: 479 REGNVSL 485
>gi|222630089|gb|EEE62221.1| hypothetical protein OsJ_17008 [Oryza sativa Japonica Group]
Length = 584
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 139/329 (42%), Gaps = 36/329 (10%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
+PD V++ +I + + G ++E + F T+ P YN
Sbjct: 134 GCHPDEVSHGTIVSGMCKLGRVEE------------ARGFLAETV--------PVQASYN 173
Query: 62 AVLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQ 119
AV++A C + WE F V+ ++ Q+G +P+ TY +++ + + R V
Sbjct: 174 AVVHALCGEFRMWE-VFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVS 232
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
PN L + LV + +GK +A+S M G S Y L R LC G +
Sbjct: 233 MGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKG 292
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVK 238
AL + + + A P +Y+ L+ ++G++ A I+N+MK+ C PN+V M+
Sbjct: 293 ALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMID 352
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ +F++A L +M D+ P+ TFNT++ R
Sbjct: 353 VLCKKMMFDQAESLIDKMLMDN------------CPPNTVTFNTLIGRLCDCGRVGRALN 400
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGK 327
V+ M +G H N + + ++ R G
Sbjct: 401 VFHGMRRNGCHPNDRTYNELLHGLFREGN 429
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/268 (19%), Positives = 121/268 (45%), Gaps = 17/268 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P++ YN ++ A + + + A +L ++ ++G P ++G ++ M G+
Sbjct: 100 VDPNVYTYNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGRV---- 155
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
E R +P +Y +V+ L E + E S V +M +RG+ + Y + C
Sbjct: 156 EEARGFLAETVPVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFC 215
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLV 231
A + A + ++ + P V+++T L++ + G + +A +++ M + +P+ +
Sbjct: 216 KARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTI 275
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
+ N++++ G + A+ F M K+ ++P+ T++T++D +
Sbjct: 276 SYNVLIRGLCCIGDLKGALDFFNSM------------KRNALLPNATTYSTLVDGFSNAG 323
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMI 319
D L++ M G N + MI
Sbjct: 324 DLDGAMLIWNEMKSSGCKPNVVVYTNMI 351
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/274 (20%), Positives = 113/274 (41%), Gaps = 22/274 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKKFKT-------------GTLER 48
P T++Y + L G +K D +SM+ LP + G +
Sbjct: 272 PSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLI 331
Query: 49 WD----PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
W+ +P++VVY +++ ++ ++ A ++ ++ P+ T+ ++ +
Sbjct: 332 WNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCD 391
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
CG+ F ++++ PN Y L++ L+REG +A + V +M G S
Sbjct: 392 CGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVT 451
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + CLC + A++ + ++ +P ++ +I A G + AA + QM
Sbjct: 452 YNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQMN 511
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
C N+V I++ G AM +M
Sbjct: 512 AVNCPRNVVAYTILISELCNQGKLSNAMVYLLKM 545
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 21/188 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTG-------- 44
P+TV + ++ L G + +V MR L F+ G
Sbjct: 377 PNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAM 436
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+E + E +V YN V+N + + A +L ++ QG +P A T+ ++
Sbjct: 437 VIEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCK 496
Query: 105 CGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK ++ ++ P N +AY +L++ L +GK A+ + M GI + A
Sbjct: 497 EGKVSIAACLLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGICPNEAT 556
Query: 164 YYDLARCL 171
+ L R +
Sbjct: 557 WNVLVRAI 564
>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Glycine max]
Length = 511
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 134/307 (43%), Gaps = 31/307 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ GH+KE F +++ M+ + P++ +N ++
Sbjct: 230 PDVVTYTTLIHGFCIMGHLKEAFSLLNEMKL---------------KNINPNVCTFNILI 274
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY-GLVMEVMLACGKYNLVYEFFRKVQKSYI 123
+A + + + A +L + + KP TY L+ L + Y F+ Q+
Sbjct: 275 DALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVT 334
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y ++N L + DEA+S E+M+ + ++ Y L LC E A+
Sbjct: 335 PDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIAL 394
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
++ + +P V SYT L+ SG +++A IF ++ K + N+ +++
Sbjct: 395 CKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGY-HLNVHAYTVLINRLC 453
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G F+EA+ L +M + KG +PD TF+ ++ A + D E + +
Sbjct: 454 KAGFFDEALDLKSKMED-----------KG-CMPDAVTFDIIIRALFEKDENDKAEKILR 501
Query: 302 RMLHHGL 308
M+ GL
Sbjct: 502 EMIARGL 508
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 119/276 (43%), Gaps = 14/276 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PD+V+YN ++N+ + K A V ++ +G P TY ++ G +
Sbjct: 193 VKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAF 252
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+++ K+ PN + +L++ L +EGK EA + M + I Y L
Sbjct: 253 SLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGY 312
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
+ + A + + P V YT +I + + A +F +MK+ P++
Sbjct: 313 FLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDI 372
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N ++ ++ E A+ L + M E + PD+Y++ +LD
Sbjct: 373 VTYNSLIDGLCKNHHLERAIALCKRMKEQG------------IQPDVYSYTILLDGLCKS 420
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
R +D + +++R+L G H N + +I +AG
Sbjct: 421 GRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAG 456
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 120/277 (43%), Gaps = 15/277 (5%)
Query: 46 LERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
++++P + PD+ + ++N + AF V + ++G P+A T +++ +
Sbjct: 80 FKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLCF 139
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ F + V + + + ++Y L+N L + G+T + +E + +
Sbjct: 140 RGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVM 199
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + LC +A ++ P VV+YT LI G+++ A + N+MK
Sbjct: 200 YNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMK 259
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+PN+ T NI++ A + G +EA L M K + PD++T+N+
Sbjct: 260 LKNINPNVCTFNILIDALSKEGKMKEAKILLAVMM------------KACIKPDVFTYNS 307
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
++D + V+ M G+ + + + MI
Sbjct: 308 LIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMI 344
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/252 (20%), Positives = 102/252 (40%), Gaps = 49/252 (19%)
Query: 90 PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSA 148
P + ++ ++ Y V F++ + + I P+ +L+N + A S
Sbjct: 55 PPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSV 114
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEAL----------MQMDKI---------CK 189
++ +RG +A L + LC G+ ++AL Q+D++ CK
Sbjct: 115 FANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCK 174
Query: 190 VAN----------------KPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
KP VV Y +I + + + +A ++++M SP++VT
Sbjct: 175 TGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVT 234
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
++ + G +EA L EM +IN P++ TFN ++DA + E +
Sbjct: 235 YTTLIHGFCIMGHLKEAFSLLNEM--KLKNIN----------PNVCTFNILIDALSKEGK 282
Query: 293 WDDLELVYKRML 304
+ +++ M+
Sbjct: 283 MKEAKILLAVMM 294
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/155 (18%), Positives = 71/155 (45%), Gaps = 16/155 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ L + H++ + M+ + ++PD+ Y +L
Sbjct: 370 PDIVTYNSLIDGLCKNHHLERAIALCKRMK---------------EQGIQPDVYSYTILL 414
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ + + E A + Q+L +G + Y +++ + G ++ + K++ K +
Sbjct: 415 DGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCM 474
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
P+A+ + +++ L+ + + D+A + +M RG++
Sbjct: 475 PDAVTFDIIIRALFEKDENDKAEKILREMIARGLL 509
>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 794
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 131/307 (42%), Gaps = 31/307 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + LG+ G +KE V+ M ++PD+ YN ++
Sbjct: 515 PDVRTYTILVDALGKEGKVKEAKSVLAVM---------------LKACVKPDVFTYNTLM 559
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N + + + A V + G P TY +++ + F+++ QK+ +
Sbjct: 560 NGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMV 619
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y LV+ L + G+ +++M RG Y L LC G ++A+
Sbjct: 620 PDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIAL 679
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
+K+ +P ++T L+ G +++A +F + K + ++ N+M+ +
Sbjct: 680 FNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGY-HLDVYIYNVMIYGHC 738
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ GL EEA+ + +M E+ IP+ TF+ +++A + D E + +
Sbjct: 739 KQGLLEEALTMLSKMEENG------------CIPNAVTFDIIINALFKKDENDKAEKLLR 786
Query: 302 RMLHHGL 308
+M+ GL
Sbjct: 787 QMIARGL 793
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/357 (20%), Positives = 141/357 (39%), Gaps = 55/357 (15%)
Query: 46 LERWDPRL-EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L + D RL +P++ +Y+ +++A + + A+ + ++ +G TY ++
Sbjct: 435 LRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCI 494
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAV-------------- 149
GK + V K+ P+ Y +LV+ L +EGK EA S +
Sbjct: 495 VGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFT 554
Query: 150 ---------------------EDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
M G+ Y L C + +EAL ++
Sbjct: 555 YNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMH 614
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NLVTCNIMVKAYLEHGLFE 247
+ P V+Y+ L+ SG I + ++M++ P +++T N ++ ++G +
Sbjct: 615 QKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLD 674
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
+A+ LF +M + + P+ +TF +LD R D + V++ +L G
Sbjct: 675 KAIALFNKMKDQG------------IRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKG 722
Query: 308 LHFNAKRHLRMILDASRAGKVELLEITWEHLARADR--ITPPALIKERFCNRLENKD 362
H + + MI + G LLE L++ + P A+ + N L KD
Sbjct: 723 YHLDVYIYNVMIYGHCKQG---LLEEALTMLSKMEENGCIPNAVTFDIIINALFKKD 776
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 109/263 (41%), Gaps = 15/263 (5%)
Query: 43 TGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
T L+R P PD V N ++ + Q + A +L QG + + +Y ++ +
Sbjct: 52 TKILKRGYP---PDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGV 108
Query: 103 LACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
G +F RK+ PN Y +++ L + EA +M +GI +
Sbjct: 109 CRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANV 168
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L C GK +EAL ++ + P V +Y L+ A G ++ A +
Sbjct: 169 VTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAV 228
Query: 222 MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
M C V N++ + L G F L E+ + + H+ G V PD++++N
Sbjct: 229 MLKAC----VKSNVITYSTLMDGYF-----LVYEV-KKAQHVFNAMSLMG-VTPDVHSYN 277
Query: 282 TMLDACAAEKRWDDLELVYKRML 304
M++ KR D ++K M+
Sbjct: 278 IMINGFCKIKRVDKALNLFKEMI 300
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/311 (20%), Positives = 127/311 (40%), Gaps = 21/311 (6%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
L+R P P V N ++ + Q + A +L QG + + +Y ++ +
Sbjct: 369 LKRGYP---PSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKI 425
Query: 106 GKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G + RK+ PN Y +++ L + EA +M +GI Y
Sbjct: 426 GDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTY 485
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
L C GK +EA+ ++++ P V +YT L+ A G ++ A + M
Sbjct: 486 STLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLK 545
Query: 225 FC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
C P++ T N ++ YL ++A +F M+ V PD++T+ +
Sbjct: 546 ACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMG------------VTPDVHTYTIL 593
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLA 339
++ K D+ ++K M + + + ++ ++G++ +L++ +
Sbjct: 594 INGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQ 653
Query: 340 RADRITPPALI 350
AD IT +LI
Sbjct: 654 PADVITYNSLI 664
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 83/190 (43%), Gaps = 51/190 (26%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV Y S+ L ++G I ++D+ID MR +R P D++ YN+++
Sbjct: 620 PDTVTYSSLVDGLCKSGRISYVWDLIDEMR------------DRGQP---ADVITYNSLI 664
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSY- 122
+ + + A + ++K QG +P+ T+ ++++ + G+ E F+ + K Y
Sbjct: 665 DGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYH 724
Query: 123 ----------------------------------IPNALAYKVLVNTLWREGKTDEAVSA 148
IPNA+ + +++N L+++ + D+A
Sbjct: 725 LDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKL 784
Query: 149 VEDMERRGIV 158
+ M RG++
Sbjct: 785 LRQMIARGLL 794
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 122/311 (39%), Gaps = 70/311 (22%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELF-------------------DVIDSMRSLPKKKFKTGT 45
PDTV ++ L G +KE +I+ + + +
Sbjct: 61 PDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAAIKF 120
Query: 46 LERWDPRL-EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L + D RL +P++ +YN +++A + + A+ + ++ +G + TY ++
Sbjct: 121 LRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCI 180
Query: 105 CGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK V K+ PN Y +LV+ L +EGK EA S
Sbjct: 181 VGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKS---------------- 224
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
L M K C +N V++Y+ L+ ++ A ++FN M
Sbjct: 225 ----------------VLAVMLKACVKSN---VITYSTLMDGYFLVYEVKKAQHVFNAMS 265
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+P++ + NIM+ + + ++A+ LF+EM ++R P I FN
Sbjct: 266 LMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMI-----LSR--------FPPIIQFNK 312
Query: 283 MLDACAAEKRW 293
+LD+ A K +
Sbjct: 313 ILDSFAKMKHY 323
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 55/327 (16%), Positives = 124/327 (37%), Gaps = 30/327 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y + L + G +KE V+ M ++ +++ Y+ ++
Sbjct: 201 PNVCTYNILVDALCKEGKVKEAKSVLAVM---------------LKACVKSNVITYSTLM 245
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + + A V + G P +Y +++ + + F+++ S P
Sbjct: 246 DGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFP 305
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ + ++++ + AVS +E +GI L C C G+ +
Sbjct: 306 PIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVL 365
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLE 242
KI K P V+ LI+ G ++ A + +++ + F N V+ ++ +
Sbjct: 366 AKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGF-QLNQVSYATLINGVCK 424
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G A+KL R+ D + L P++ ++T++DA + + ++
Sbjct: 425 IGDTRGAIKLL-----------RKIDGR-LTKPNVEMYSTIIDALCKYQLVSEAYGLFSE 472
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
M G+ + + +I GK++
Sbjct: 473 MTVKGISADVVTYSTLIYGFCIVGKLK 499
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 26/189 (13%)
Query: 142 TDEAVS--AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSY 199
D+AVS + + +RG L + LC G+ +EAL DK+ + VSY
Sbjct: 42 VDDAVSLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSY 101
Query: 200 TGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
LI G+ + A ++ PN+ N ++ A ++ L EA LF EM
Sbjct: 102 ATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTV 161
Query: 259 ---DSNHINREYDKKGLVI--------------------PDIYTFNTMLDACAAEKRWDD 295
+N + G I P++ T+N ++DA E + +
Sbjct: 162 KGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKE 221
Query: 296 LELVYKRML 304
+ V ML
Sbjct: 222 AKSVLAVML 230
>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 594
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 138/308 (44%), Gaps = 19/308 (6%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP++V Y+ ++++ + + A + ++ G P+ TY ++ M G++
Sbjct: 241 EPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASI 300
Query: 114 FFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F+++ + + P+ + + +LV+ L +EG EA+S M + + Y L +C
Sbjct: 301 LFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVC 360
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
+ +E+ ++++ +P VV+++ + G + A I N M + PN+V
Sbjct: 361 KSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVV 420
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ Y H +EA K+F M KG PD+ ++N ++ +
Sbjct: 421 TYNSLMDGYCLHSQMDEARKVFDIMVN-----------KGCA-PDVLSYNILIKGYCKSE 468
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEITWEHLARADRITPP 347
R D+ + ++ M H GL N+ H +I +AG+ EL + H D IT
Sbjct: 469 RIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYS 528
Query: 348 ALIKERFC 355
L+ FC
Sbjct: 529 TLL-SGFC 535
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 141/310 (45%), Gaps = 39/310 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V+Y I +L + + E D+ MRS+ + P +V YN+++
Sbjct: 242 PEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIG---------------ISPTVVTYNSLI 286
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE----FFRKVQK 120
QW+ A + +++ + KP T+ ++++ A K +V E F + +Q
Sbjct: 287 YGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVD---ALCKEGVVLEALSVFGKMIQI 343
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ P+ + Y L++ + + E+ + + +M R I + C G EA
Sbjct: 344 AMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEA 403
Query: 181 LMQMDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVK 238
++ + + +P VV+Y L+ CL S + A +F+ M N C+P++++ NI++K
Sbjct: 404 QSIINLMIERGLRPNVVTYNSLMDGYCLHS-QMDEARKVFDIMVNKGCAPDVLSYNILIK 462
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLE 297
Y + +EA +LF EM+ KGL P+ T T++ C A + + E
Sbjct: 463 GYCKSERIDEAKQLFDEMSH-----------KGLT-PNSITHTTLISGLCQAGRPYAAKE 510
Query: 298 LVYKRMLHHG 307
L +K+M HG
Sbjct: 511 L-FKKMGSHG 519
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 129/281 (45%), Gaps = 25/281 (8%)
Query: 38 KKKFKTGTLERWDPRLE-----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ 86
+ K K G+ +D L P I +N +L A VR K ++ + ++++
Sbjct: 74 RDKCKGGSFSNFDDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFF 133
Query: 87 GQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEA 145
G S T +++ + L + K+ K + P+ + + L+N L EG+ EA
Sbjct: 134 GVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEA 193
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+ ++ + RG + + + LC GK A++ M K+ ++ +P VVSY+ +I +
Sbjct: 194 MEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDS 253
Query: 206 CLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
+ + A +F M++ SP +VT N ++ G +++A LF+EM
Sbjct: 254 LCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEML------- 306
Query: 265 REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
E++ K PD+ TF+ ++DA E + V+ +M+
Sbjct: 307 -EWNMK----PDVVTFSILVDALCKEGVVLEALSVFGKMIQ 342
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/264 (20%), Positives = 114/264 (43%), Gaps = 20/264 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + + L + G + E V M + +EPDIV Y++++
Sbjct: 312 PDVVTFSILVDALCKEGVVLEALSVFGKMIQIA---------------MEPDIVTYSSLI 356
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKSYI 123
+ + W+ + +L ++ + +P T+ + ++V G + +++
Sbjct: 357 HGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLR 416
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L++ + DEA + M +G Y L + C + + +EA
Sbjct: 417 PNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQL 476
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
D++ P +++T LI +G A +F +M + C P+L+T + ++ + +
Sbjct: 477 FDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCK 536
Query: 243 HGLFEEAMKLFQEMAEDS---NHI 263
HG +EA+ LF+ + + NH+
Sbjct: 537 HGHLDEALALFEALKKSQLKPNHV 560
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 112/255 (43%), Gaps = 17/255 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ + ++ KE +++ M S + PD+V ++ +
Sbjct: 347 PDIVTYSSLIHGVCKSSLWKESSTLLNEMLS---------------RNIRPDVVTFSIWV 391
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKSYI 123
+ ++ A ++ + ++G +P+ TY +M+ + + + F V K
Sbjct: 392 DVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCA 451
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ L+Y +L+ + + DEA ++M +G+ ++ + L LC AG+ A
Sbjct: 452 PDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKEL 511
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
K+ P +++Y+ L+ G++ A +F +K PN V C I++ +
Sbjct: 512 FKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCK 571
Query: 243 HGLFEEAMKLFQEMA 257
G E+A +LF ++
Sbjct: 572 AGKLEDAKELFSSLS 586
>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 624
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 116/258 (44%), Gaps = 14/258 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++ IV +N ++N R +W+ A + ++ G KP+ TY V+ GK+
Sbjct: 213 IKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAAS 272
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F+ ++ K+ P+ Y ++ L +E + +EA + + G+V +A Y L
Sbjct: 273 KIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGC 332
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C+ G ++A D++ V +Y LI A I+ A + +M+ P++
Sbjct: 333 CNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDV 392
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT NI + Y G ++A+ LF EM E + + P + T+ +++D
Sbjct: 393 VTYNIQINGYCRCGNAKKALSLFDEMVEKN------------IRPTVETYTSLIDVFGKR 440
Query: 291 KRWDDLELVYKRMLHHGL 308
R + E +K+ + G+
Sbjct: 441 NRMSEAEEKFKKSIKEGM 458
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 135/295 (45%), Gaps = 19/295 (6%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D L+PD YN+ ++ + ++ E A VL +L + G P+A TY +++ C K +
Sbjct: 280 DKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDG--CCNKGD 337
Query: 110 LVYEFFRK---VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
L F + + + + + Y +L++ L+ E + +EA +++M +G+ Y
Sbjct: 338 LDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNI 397
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNF 225
C G ++AL D++ + +P V +YT LI + A F + +K
Sbjct: 398 QINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEG 457
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
P+++ N ++ + +G + A +L +EM V+PD TFNT++
Sbjct: 458 MLPDIIMFNALIDGHCVNGNIDRAFQLLKEM------------DNAKVVPDEVTFNTLMQ 505
Query: 286 ACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLA 339
E++ ++ + + M G+ + + +I S+ G + + LE+ E L+
Sbjct: 506 GYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLS 560
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 105/209 (50%), Gaps = 8/209 (3%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+EPD+V YN +N R + A + ++ ++ +P+ TY +++V GK N +
Sbjct: 388 VEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVF---GKRNRMS 444
Query: 113 E----FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
E F + +++ +P+ + + L++ G D A +++M+ +V + L
Sbjct: 445 EAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLM 504
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CS 227
+ C K EEA +D++ + KP +SY LI G++++A +F++M +
Sbjct: 505 QGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFD 564
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
P L+T N +++ Y + G + A +L +EM
Sbjct: 565 PTLLTYNALIQGYSKIGEADHAEELLREM 593
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 16/161 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + + ++ G+I F ++ M + ++ PD V +N ++
Sbjct: 460 PDIIMFNALIDGHCVNGNIDRAFQLLKEMD---------------NAKVVPDEVTFNTLM 504
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
R ++ E A +L ++K++G KP +Y ++ G E F ++ +
Sbjct: 505 QGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFD 564
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
P L Y L+ + G+ D A + +M+ +GI + Y
Sbjct: 565 PTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDSTY 605
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 13/160 (8%)
Query: 150 EDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS 209
E+M + I S + + LC GK ++A + + KP VV+Y +I
Sbjct: 206 EEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLR 265
Query: 210 GNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD 268
G + A+ IF MK+ P+ T N + + EEA + ++ E
Sbjct: 266 GKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLES--------- 316
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
GLV P+ T+N ++D C + D M++ G+
Sbjct: 317 --GLV-PNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGI 353
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD ++Y ++ + G +K+ +V D M SL +P ++ YNA++
Sbjct: 530 PDHISYNTLISGYSKRGDMKDALEVFDEMLSL---------------GFDPTLLTYNALI 574
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
+ + + A +L++++ +G P +TY V+E M
Sbjct: 575 QGYSKIGEADHAEELLREMQSKGITPDDSTYLYVIEAM 612
>gi|449454285|ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
gi|449472527|ref|XP_004153621.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
Length = 875
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 124/306 (40%), Gaps = 28/306 (9%)
Query: 51 PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
P P I YN + ++ + + W+ + + KP T+ L++ + G
Sbjct: 112 PHDPPPISFYNLLFRCSLKESRVDCVIWLYKDMAVARVKPQTYTFNLLISALCEMGYLEN 171
Query: 111 VYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
E F K+ +K PN + +LV R G + +++M G + + Y +
Sbjct: 172 AREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDLLDEMRSSGALPNRVAYNTVIS 231
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-----N 224
LC G+ EA ++K+ +V P +V++ I A SG I A+ IF M+
Sbjct: 232 SLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEEMG 291
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD-------KKGLVI--- 274
PN VT N+M++ + G+FEEA +F M R Y+ + G ++
Sbjct: 292 LPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSETLSLRSYNIWMLGLVRSGKLLEAH 351
Query: 275 ------------PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA 322
P++Y++N ++ + D + M G+ + + ++
Sbjct: 352 LILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGY 411
Query: 323 SRAGKV 328
R GK+
Sbjct: 412 CRRGKI 417
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 128/304 (42%), Gaps = 33/304 (10%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
+ P+ VAY ++ +L G E +++ MR + L PDIV +N
Sbjct: 218 GALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVG---------------LSPDIVTFN 262
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQ----KPSATTYGLVMEVMLACGKYNLVYEFFRK 117
+ A + Q A + + ++ + KP+ TY L++E + G + F
Sbjct: 263 CRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDS 322
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
++ S + +Y + + L R GK EA + +M + I + Y L LC G
Sbjct: 323 MKNSETLSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMF 382
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIM 236
+A + + + P V+Y+ L+ G I A Y+ +M C PN+ TCNI+
Sbjct: 383 SDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNIL 442
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDD 295
+ + + G EA L Q M E R Y GL D T NTM++ C A
Sbjct: 443 LHSLWKEGRASEAEDLLQMMNE------RGY---GL---DNVTCNTMINGLCKAGNLDKA 490
Query: 296 LELV 299
+E+V
Sbjct: 491 IEIV 494
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 114/282 (40%), Gaps = 37/282 (13%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD V Y+ +L+ RR + A +VL+++ Q G P+ T +++ + G+ + +
Sbjct: 399 PDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDL 458
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL---YYDL--- 167
+ + ++ Y + + ++N L + G D+A+ V M RG L + DL
Sbjct: 459 LQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDI 518
Query: 168 ----ARC-------------LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG 210
+C LC G+ +EA ++ ++ P + + I G
Sbjct: 519 RNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQG 578
Query: 211 NIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
+ +A + +M K C+ +L T N +++ E L EM E
Sbjct: 579 KLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERG--------- 629
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
+ P++YT+N ++ + + D + ML G+ N
Sbjct: 630 ---IFPNVYTYNNIISCLSEGGKLKDATCLLDEMLQKGISPN 668
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/322 (18%), Positives = 124/322 (38%), Gaps = 61/322 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD++ Y +I L + G + E KKK LE +L PD ++++ +
Sbjct: 527 PDSITYATIIGGLCKVGRVDE-----------AKKKL----LEMIGKKLSPDSLIFDTFI 571
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
++ + AF VL++++++G S TY +++ G N ++E +
Sbjct: 572 YNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQ---GLGSENQIFEIY--------- 619
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
G DE M+ RGI + Y ++ CL GK ++A +
Sbjct: 620 ---------------GLMDE-------MKERGIFPNVYTYNNIISCLSEGGKLKDATCLL 657
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHG 244
D++ + P + ++ LI A + + A +F + C + M L G
Sbjct: 658 DEMLQKGISPNIYTFRILIGAFFKACDFGAAQELFEIALSLCGHKESLYSFMFNELLAGG 717
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
+A +LF+ + S + + + +++ + + DD + +M+
Sbjct: 718 ETLKAKELFEAALDRSLALKN------------FLYRDLIEKLCKDGKLDDASFILHKMM 765
Query: 305 HHGLHFNAKRHLRMILDASRAG 326
F+ + +I + + G
Sbjct: 766 DKQYSFDPASFMPVIDELGKRG 787
>gi|224063295|ref|XP_002301082.1| predicted protein [Populus trichocarpa]
gi|222842808|gb|EEE80355.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 104/220 (47%), Gaps = 4/220 (1%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG-QKPSATTYGLVMEVMLACGKY 108
D L+P+ ++N + + E AF V++++K+ P+ TY +M+ + G+
Sbjct: 183 DHMLKPNTCIFNIFIKYHCKSGDLESAFAVVKEMKKSSISYPNLITYSTLMDGLCESGRL 242
Query: 109 NLVYEFFRKV--QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
E F ++ + +P+AL Y VL+N GK D A +E M+ G + Y
Sbjct: 243 KEAIELFEEMVSKDQILPDALTYNVLINGFSCWGKVDRAKKIMEFMKSNGCSPNVFNYSA 302
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF- 225
L C G+ EEA+ +++ K V YT LI G I A + +MK
Sbjct: 303 LMSGFCKEGRLEEAMDAFEEMKIFGLKQDTVGYTILINYFCRFGRIDEAMALLEEMKETK 362
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
C ++VT N++++ + G EEA+ + ++ + ++N+
Sbjct: 363 CKADIVTVNVLLRGFCGEGRTEEALGMLNRLSSEGIYLNK 402
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 112/258 (43%), Gaps = 16/258 (6%)
Query: 3 SYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNA 62
SYP+ + Y ++ L ++G +KE ++ + M S ++ PD + YN
Sbjct: 222 SYPNLITYSTLMDGLCESGRLKEAIELFEEMVS--------------KDQILPDALTYNV 267
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY 122
++N + + A +++ +K G P+ Y +M G+ + F +++
Sbjct: 268 LINGFSCWGKVDRAKKIMEFMKSNGCSPNVFNYSALMSGFCKEGRLEEAMDAFEEMKIFG 327
Query: 123 IP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+ + + Y +L+N R G+ DEA++ +E+M+ L R C G+ EEAL
Sbjct: 328 LKQDTVGYTILINYFCRFGRIDEAMALLEEMKETKCKADIVTVNVLLRGFCGEGRTEEAL 387
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCSPNLVTCNIMVKAY 240
++++ SY ++ + G++ A + + P+ T N ++
Sbjct: 388 GMLNRLSSEGIYLNKASYRIVLNSLCQKGDLDKALELLGLTLSRGFVPHHATSNELLVGL 447
Query: 241 LEHGLFEEAMKLFQEMAE 258
+ G+ ++A+ +AE
Sbjct: 448 CKAGMADDAVVALYGLAE 465
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 68/328 (20%), Positives = 131/328 (39%), Gaps = 65/328 (19%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
Y+ +++ R K+++ +L+Q+ + K + + +M+ ++ V E F K+
Sbjct: 85 TYSTIIDKLARAKKFQAVDALLRQMMYETCKFHESLFLNLMKYFAKSSEFERVVEMFNKI 144
Query: 119 Q------------------------------------KSYI--PNALAYKVLVNTLWREG 140
Q K ++ PN + + + + G
Sbjct: 145 QPIVREKPSLKAISTCLNLLVESKQVDLLRGFLLDLNKDHMLKPNTCIFNIFIKYHCKSG 204
Query: 141 KTDEAVSAVEDMERRGIVGSAALYYD-LARCLCSAGKCEEALMQMDK-ICKVANKPLVVS 198
+ A + V++M++ I + Y L LC +G+ +EA+ ++ + K P ++
Sbjct: 205 DLESAFAVVKEMKKSSISYPNLITYSTLMDGLCESGRLKEAIELFEEMVSKDQILPDALT 264
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM- 256
Y LI G + A I MK N CSPN+ + ++ + + G EEAM F+EM
Sbjct: 265 YNVLINGFSCWGKVDRAKKIMEFMKSNGCSPNVFNYSALMSGFCKEGRLEEAMDAFEEMK 324
Query: 257 ----AEDS-------NHINR-----------EYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
+D+ N+ R E K+ DI T N +L E R +
Sbjct: 325 IFGLKQDTVGYTILINYFCRFGRIDEAMALLEEMKETKCKADIVTVNVLLRGFCGEGRTE 384
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMILDA 322
+ + R+ G++ N K R++L++
Sbjct: 385 EALGMLNRLSSEGIYLN-KASYRIVLNS 411
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 87/201 (43%), Gaps = 16/201 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y ++ + G ++E D + M+ L+ D V Y ++
Sbjct: 295 PNVFNYSALMSGFCKEGRLEEAMDAFEEMKIFG---------------LKQDTVGYTILI 339
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N R + + A +L+++K+ K T +++ G+ ++ I
Sbjct: 340 NYFCRFGRIDEAMALLEEMKETKCKADIVTVNVLLRGFCGEGRTEEALGMLNRLSSEGIY 399
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N +Y++++N+L ++G D+A+ + RG V A +L LC AG ++A++
Sbjct: 400 LNKASYRIVLNSLCQKGDLDKALELLGLTLSRGFVPHHATSNELLVGLCKAGMADDAVVA 459
Query: 184 MDKICKVANKPLVVSYTGLIQ 204
+ + ++ KP S+ L++
Sbjct: 460 LYGLAEMGFKPEQDSWALLVE 480
>gi|297796623|ref|XP_002866196.1| hypothetical protein ARALYDRAFT_495822 [Arabidopsis lyrata subsp.
lyrata]
gi|297312031|gb|EFH42455.1| hypothetical protein ARALYDRAFT_495822 [Arabidopsis lyrata subsp.
lyrata]
Length = 821
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 142/320 (44%), Gaps = 46/320 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKF---------------KTGTL--- 46
P+ V Y ++ L Q G + E+ D++ R L + F K G L
Sbjct: 56 PNLVTYTAVVSALCQLGKVDEVRDLV---RRLEDEGFEFDCVFYSNWIHGYFKGGALVDA 112
Query: 47 -----ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
+ + + D+V Y+ +++ R E A +L ++ ++G +P+ TY ++
Sbjct: 113 LMQDRKMVEKGINRDVVSYSILIDGLSREGNIEKALGLLGKMIKEGIEPNLITYTAIIRG 172
Query: 102 MLACGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ GK + F ++ I + Y L++ + ++G + A S + DME+RGI S
Sbjct: 173 LCKKGKLEDAFVLFDRILSFGIEVDEFLYVTLIDGICKKGNLNRAFSMLGDMEQRGIQPS 232
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y + LC AG+ EA D I K V++Y+ L+ + + NI I
Sbjct: 233 ILTYNTVINGLCKAGRVSEA----DDISKGVVGD-VITYSTLLDSYVKVENIDAVLEIRR 287
Query: 221 QMKNFCSP-NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
+ P +LV CNI++KA+L G + EA L++ M E GL PD T
Sbjct: 288 RFVEAKIPMDLVMCNILLKAFLLVGAYGEADALYRAMPE-----------MGLT-PDTAT 335
Query: 280 FNTMLDA-CAAEKRWDDLEL 298
+ TM++ C + D LE+
Sbjct: 336 YATMIEGYCKTGQIEDALEM 355
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 114/255 (44%), Gaps = 19/255 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLV 111
L P++V Y AV++A + + + ++++L+ +G + Y + G + +
Sbjct: 54 LVPNLVTYTAVVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYFKGGALVDAL 113
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ + V+K + ++Y +L++ L REG ++A+ + M + GI + Y + R L
Sbjct: 114 MQDRKMVEKGINRDVVSYSILIDGLSREGNIEKALGLLGKMIKEGIEPNLITYTAIIRGL 173
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C GK E+A + D+I + Y LI GN+ A + M + P++
Sbjct: 174 CKKGKLEDAFVLFDRILSFGIEVDEFLYVTLIDGICKKGNLNRAFSMLGDMEQRGIQPSI 233
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T N ++ + G EA + KG V+ D+ T++T+LD+
Sbjct: 234 LTYNTVINGLCKAGRVSEADDI----------------SKG-VVGDVITYSTLLDSYVKV 276
Query: 291 KRWDDLELVYKRMLH 305
+ D + + +R +
Sbjct: 277 ENIDAVLEIRRRFVE 291
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/230 (20%), Positives = 98/230 (42%), Gaps = 4/230 (1%)
Query: 29 VIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ 88
++D++RSL E + D++ Y ++N + A + K +G
Sbjct: 480 LVDNLRSLDAYLLVVNAGETTLSSM--DVIDYTIIINGLCKEGFLVKALDLCNFAKSKGV 537
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVS 147
+ TY ++ + G F + +P+ + Y +L++ L +EG +A
Sbjct: 538 TLNTITYNSLINGLCQQGCLVEALRLFDSLDNIGLVPSEVTYGILIDNLCKEGLFLDAEK 597
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
++ M +G+V + +Y + C G+ E+A+ + + KP + + +I+
Sbjct: 598 LLDSMVSKGLVPNILIYNSIVDGYCKLGQTEDAMRVLSRKMMGRVKPDAFTVSSIIKGYC 657
Query: 208 DSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
G+++ A +F + K S + + ++K + G EEA L +EM
Sbjct: 658 KKGDMEEALRVFAEFKEENISADFLGFLFLIKCFCTKGRMEEARGLLREM 707
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 1/143 (0%)
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
K N + Y L+N L ++G EA+ + ++ G+V S Y L LC G
Sbjct: 534 SKGVTLNTITYNSLINGLCQQGCLVEALRLFDSLDNIGLVPSEVTYGILIDNLCKEGLFL 593
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCSPNLVTCNIMV 237
+A +D + P ++ Y ++ G ++A + + +M P+ T + ++
Sbjct: 594 DAEKLLDSMVSKGLVPNILIYNSIVDGYCKLGQTEDAMRVLSRKMMGRVKPDAFTVSSII 653
Query: 238 KAYLEHGLFEEAMKLFQEMAEDS 260
K Y + G EEA+++F E E++
Sbjct: 654 KGYCKKGDMEEALRVFAEFKEEN 676
Score = 41.6 bits (96), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 32/168 (19%), Positives = 76/168 (45%), Gaps = 15/168 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDV-------IDSMRSLPKKKFKTGTLE-------RW- 49
P + Y ++ L +AG + E D+ + + +L K ++ R+
Sbjct: 231 PSILTYNTVINGLCKAGRVSEADDISKGVVGDVITYSTLLDSYVKVENIDAVLEIRRRFV 290
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ ++ D+V+ N +L A + + A + + + + G P TY ++E G+
Sbjct: 291 EAKIPMDLVMCNILLKAFLLVGAYGEADALYRAMPEMGLTPDTATYATMIEGYCKTGQIE 350
Query: 110 LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
E F +++KS + A+ Y +++ L ++G + A+ + ++ +G+
Sbjct: 351 DALEMFNELRKSSVSAAVCYNHIIDALCKKGMLETAMEVLIELWEKGL 398
>gi|356509257|ref|XP_003523367.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49240-like [Glycine max]
Length = 631
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 145/346 (41%), Gaps = 75/346 (21%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P I NAVL A +R+ ++ + + + Q G P+ T+ LV + L C K + E
Sbjct: 126 PTIFTINAVLAALLRQSRYSDLLSLHRFITQAGVVPNIITHNLVFQTYLDCRKPDTALEH 185
Query: 115 FRKV--QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY--DLARC 170
+++ P+ Y+VL+ L K + A+ +M+ +G +Y+ L
Sbjct: 186 YKQFLNDAPMNPSPTTYRVLIKGLIDNSKLERAMDIKTEMDSKGFAPDPLVYHYLMLGHA 245
Query: 171 LCSAGKCEEALMQM-----DKICKVANKPLV----------------------------- 196
S G +A++++ +++ V +V
Sbjct: 246 RVSDG---DAILRLYEELRERLGGVVQDGIVFGCLMKGYFVKGMEKEAMECYEEALGKKK 302
Query: 197 ---VSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP------NLVTCNIMVKAYLEHGLFE 247
V Y ++ A +G A +F++M P NL + N++V Y + G FE
Sbjct: 303 MSAVGYNSVLDALSKNGRFDEALRLFDRMMKEHEPLKRLSVNLGSFNVIVDGYCDEGRFE 362
Query: 248 EAMKLFQEMAE-----DS----NHINR---------------EYDKKGLVIPDIYTFNTM 283
EAM++F++M E D+ N I+R E + KG V PD +T+ +
Sbjct: 363 EAMEVFRKMGEYRCSPDTLSFNNLIDRLCDNGRIVEAEEVYGEMEGKG-VSPDEFTYGLL 421
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+DAC E R DD +++M+ GL N + R++ + GK++
Sbjct: 422 MDACFRENRADDAAAYFRKMVDSGLRPNLAVYNRLVGGLVKVGKID 467
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/209 (18%), Positives = 91/209 (43%), Gaps = 6/209 (2%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ-----KPSATTYGLVMEVMLACGKYNLVY 112
V YN+VL+A + +++ A + ++ ++ + + ++ ++++ G++
Sbjct: 306 VGYNSVLDALSKNGRFDEALRLFDRMMKEHEPLKRLSVNLGSFNVIVDGYCDEGRFEEAM 365
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E FRK+ + P+ L++ L++ L G+ EA +ME +G+ Y L
Sbjct: 366 EVFRKMGEYRCSPDTLSFNNLIDRLCDNGRIVEAEEVYGEMEGKGVSPDEFTYGLLMDAC 425
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV 231
+ ++A K+ +P + Y L+ + G I A F M ++
Sbjct: 426 FRENRADDAAAYFRKMVDSGLRPNLAVYNRLVGGLVKVGKIDEAKGFFELMVKKLKMDVT 485
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
+ ++K + G +E +K+ + +D+
Sbjct: 486 SYQFIMKVLSDEGRLDEMLKIVDTLLDDN 514
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 2/137 (1%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R PD + +N +++ + A V +++ +G P TYGL+M+ + +
Sbjct: 375 RCSPDTLSFNNLIDRLCDNGRIVEAEEVYGEMEGKGVSPDEFTYGLLMDACFRENRADDA 434
Query: 112 YEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+FRK+ S + PN Y LV L + GK DEA E M ++ + Y + +
Sbjct: 435 AAYFRKMVDSGLRPNLAVYNRLVGGLVKVGKIDEAKGFFELMVKK-LKMDVTSYQFIMKV 493
Query: 171 LCSAGKCEEALMQMDKI 187
L G+ +E L +D +
Sbjct: 494 LSDEGRLDEMLKIVDTL 510
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 15/148 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT+++ ++ L G I E +V M + PD Y ++
Sbjct: 378 PDTLSFNNLIDRLCDNGRIVEAEEVYGEMEG---------------KGVSPDEFTYGLLM 422
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+AC R + + A +++ G +P+ Y ++ ++ GK + FF + K
Sbjct: 423 DACFRENRADDAAAYFRKMVDSGLRPNLAVYNRLVGGLVKVGKIDEAKGFFELMVKKLKM 482
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDM 152
+ +Y+ ++ L EG+ DE + V+ +
Sbjct: 483 DVTSYQFIMKVLSDEGRLDEMLKIVDTL 510
>gi|326488077|dbj|BAJ89877.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 395
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 140/316 (44%), Gaps = 29/316 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y I +G++ I+++ + + M + K +K+ V YN ++
Sbjct: 102 PDEFTYHLILDAMGKSMRIEDMLKIQEEMHN---KGYKS------------TYVTYNTII 146
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ V+ K + A + QL +G P+ TYG +++ +L G F ++ +
Sbjct: 147 SGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCE 206
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y +L+N G T++ E M +G+ Y + LC+ G+ + L
Sbjct: 207 PNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSY 266
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + +P +++Y LI SG ++ A ++N M K +PNL T N ++ +
Sbjct: 267 FKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGK 326
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G EA K+++E+ KG P+++T+N ++ + ++ Y R
Sbjct: 327 AGKAAEAGKMYEELL-----------AKGWK-PNVFTYNALIRGYSVSGSPENAFAAYGR 374
Query: 303 MLHHGLHFNAKRHLRM 318
M+ G N+ ++++
Sbjct: 375 MIVGGCRPNSSTYMQL 390
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 127/282 (45%), Gaps = 22/282 (7%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKY 108
+PD Y+ +L+A + + E + +++ +G K + TY GLV ML
Sbjct: 101 DPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLD-EAI 159
Query: 109 NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
NL Y+ + + + P Y L++ L ++G ++A + ++M G + A+Y L
Sbjct: 160 NLYYQL---MSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILL 216
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CS 227
AG E+ + + + P + SYT +I G + + F Q+ +
Sbjct: 217 NGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLE 276
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P+L+T N+++ + G EEA+ L+ +M +KKG + P++YT+N+++
Sbjct: 277 PDLITYNLLIHGLGKSGRLEEALSLYNDM-----------EKKG-IAPNLYTYNSLILYL 324
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + +Y+ +L G N + +I S +G E
Sbjct: 325 GKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPE 366
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/281 (19%), Positives = 125/281 (44%), Gaps = 24/281 (8%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNL 110
D + + ++ + K+ A ++++ + G +Y GLV E ++ ++
Sbjct: 33 DDLFLSPIIRHLCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLI-----DI 87
Query: 111 VYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
E F ++++ P+ Y ++++ + + + ++ + E+M +G + Y +
Sbjct: 88 AEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIIS 147
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSP 228
L + +EA+ ++ P +Y L+ L GNI++A +F++M + C P
Sbjct: 148 GLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEP 207
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
N NI++ Y G E+ +LF+ M E + PDI ++ ++D
Sbjct: 208 NCAIYNILLNGYRIAGDTEKVCELFESMVEQGMN------------PDIKSYTVVIDTLC 255
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
A+ R +D +K++ GL + + +I ++G++E
Sbjct: 256 ADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLE 296
>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
Length = 1205
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/311 (22%), Positives = 135/311 (43%), Gaps = 43/311 (13%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V Y ++ G +KE +++ M KT + P++ YN +++
Sbjct: 233 DVVTYSTLIYGFCIEGKLKEAIGLLNEMV------LKT---------INPNVYTYNILVD 277
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY--- 122
A + + + A VL + + KP TY +M+ Y LVYE +K Q +
Sbjct: 278 ALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMD------GYFLVYEV-KKAQHVFNAM 330
Query: 123 -----IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
P+ Y +L+N + DEA++ ++M ++ +V Y L LC +G+
Sbjct: 331 SLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRI 390
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIM 236
+D++ V++Y+ LI +G++ A +FN+MK+ PN T I+
Sbjct: 391 PYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTIL 450
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ + G ++A ++FQ++ H+N +YT+N M+D + ++
Sbjct: 451 LDGLCKGGRLKDAQEVFQDLLTKGYHLN------------VYTYNVMIDGHCKQGLLEEA 498
Query: 297 ELVYKRMLHHG 307
+ +M +G
Sbjct: 499 LTMLSKMEDNG 509
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 132/307 (42%), Gaps = 39/307 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV ++ L G +K+ D + + + + V Y ++
Sbjct: 127 PDTVTLNTLIKGLCLKGQVKKALHFHDKLLA---------------QGFQLNQVSYGTLI 171
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE----FFRKVQK 120
N + A +LQ++ + KP+ Y +++ + KY LV E F K
Sbjct: 172 NGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALC---KYQLVSEAYGLFSEMTVK 228
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ + Y L+ EGK EA+ + +M + I + Y L LC GK +EA
Sbjct: 229 GISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEA 288
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
+ + K KP V++Y+ L+ ++ A ++FN M +P++ T I++
Sbjct: 289 KSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILING 348
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR----WDD 295
+ ++ + +EA+ LF+EM + + ++P I T+++++D R WD
Sbjct: 349 FCKNKMVDEALNLFKEMHQKN------------MVPGIVTYSSLIDGLCKSGRIPYVWDL 396
Query: 296 LELVYKR 302
++ ++ R
Sbjct: 397 IDEMHDR 403
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 128/322 (39%), Gaps = 50/322 (15%)
Query: 46 LERWDPRL-EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L++ D RL +P++V+Y+ +++A + + A+ + ++ +G TY ++
Sbjct: 187 LQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCI 246
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAV-------------- 149
GK + V K+ PN Y +LV+ L +EGK EA S +
Sbjct: 247 EGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVIT 306
Query: 150 ---------------------EDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
M G+ Y L C +EAL ++
Sbjct: 307 YSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMH 366
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NLVTCNIMVKAYLEHGLFE 247
+ P +V+Y+ LI SG I + ++M + P N++T + ++ ++G +
Sbjct: 367 QKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLD 426
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
A+ LF +M + + P+ +TF +LD R D + V++ +L G
Sbjct: 427 RAIALFNKMKDQG------------IRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKG 474
Query: 308 LHFNAKRHLRMILDASRAGKVE 329
H N + MI + G +E
Sbjct: 475 YHLNVYTYNVMIDGHCKQGLLE 496
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 104/236 (44%), Gaps = 14/236 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PD++ N ++N Q F VL ++ ++G P T +++ + G+
Sbjct: 90 IQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKAL 149
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F K + + + N ++Y L+N + + G T A+ ++ ++ R + +Y + L
Sbjct: 150 HFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDAL 209
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C EA ++ VV+Y+ LI G ++ A + N+M +PN+
Sbjct: 210 CKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNV 269
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
T NI+V A + G +EA + M K V PD+ T++T++D
Sbjct: 270 YTYNILVDALCKEGKVKEAKSVLAVML------------KACVKPDVITYSTLMDG 313
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 87/206 (42%), Gaps = 4/206 (1%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD + + ++N + Q A +L QG + + +YG ++ + G +
Sbjct: 994 PDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKL 1053
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
RK+ P+ + Y +++ L + +A +M +GI Y L C
Sbjct: 1054 LRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCI 1113
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN--IQNAAYIFNQMK-NFCSPNL 230
GK +EA+ ++K+ P V +Y L+ A G + + + ++M+ N C N
Sbjct: 1114 VGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANA 1173
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEM 256
VT I++ A E ++ KL EM
Sbjct: 1174 VTFEIIISALFEKDENDKVEKLLHEM 1199
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 98/224 (43%), Gaps = 14/224 (6%)
Query: 71 KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIPNALAY 129
K + A + +L+ +G +P T +++ G+ + K+ ++ Y P+ + +
Sbjct: 940 KHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITF 999
Query: 130 KVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK 189
L+N L +G+ ++A+ + + +G + Y L +C G A+ + KI
Sbjct: 1000 TTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDG 1059
Query: 190 VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEE 248
KP VV Y +I A + A +F +M S ++VT N ++ + G +E
Sbjct: 1060 RLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKE 1119
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
A+ L +M + + P++ T+N ++DA E +
Sbjct: 1120 AIGLLNKMVLKT------------INPNVRTYNILVDALCKEGK 1151
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 77/161 (47%), Gaps = 16/161 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y S+ L ++G I ++D+ID M +R P +++ Y++++
Sbjct: 372 PGIVTYSSLIDGLCKSGRIPYVWDLIDEMH------------DRGQP---ANVITYSSLI 416
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + + A + ++K QG +P+ T+ ++++ + G+ E F+ + K Y
Sbjct: 417 DGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYH 476
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
N Y V+++ ++G +EA++ + ME G + A +
Sbjct: 477 LNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVTF 517
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 46 LERWDPRL-EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L + D RL +PD+V+YN +++A + + A+ + ++ +G TY ++
Sbjct: 1054 LRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCI 1113
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKT--DEAVSAVEDMERRGIVGSA 161
GK K V K+ PN Y +LV+ L +EGK DE++S + ME G +A
Sbjct: 1114 VGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANA 1173
Query: 162 ALY 164
+
Sbjct: 1174 VTF 1176
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/309 (18%), Positives = 120/309 (38%), Gaps = 53/309 (17%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R P I+ +N +L++ + K + A + +L+ +G +P T +++ G+
Sbjct: 54 RHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFG 113
Query: 112 YEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ K+ ++ Y P+ + L+ +
Sbjct: 114 FSVLAKILKRGYPPDTVTLNTLI-----------------------------------KG 138
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPN 229
LC G+ ++AL DK+ + VSY LI G+ + A + ++ PN
Sbjct: 139 LCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPN 198
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+V + ++ A ++ L EA LF EM KG + D+ T++T++
Sbjct: 199 VVMYSTIIDALCKYQLVSEAYGLFSEMT-----------VKG-ISADVVTYSTLIYGFCI 246
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLEITWEHLARADRIT 345
E + + + M+ ++ N + ++ + GKV+ +L + + + D IT
Sbjct: 247 EGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVIT 306
Query: 346 PPALIKERF 354
L+ F
Sbjct: 307 YSTLMDGYF 315
>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
Length = 820
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 118/287 (41%), Gaps = 49/287 (17%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP++ YNA++ + A +L Q+++ G +P TY L++ G +
Sbjct: 332 EPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFR 391
Query: 114 FFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R ++ + + + Y VL++ L + GK DEA S + +E RGI ++ + + LC
Sbjct: 392 LLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLC 451
Query: 173 SAGKCEEALMQMDK-------------------ICKVAN----------------KPLVV 197
GK + A ++K +CK KP V
Sbjct: 452 KGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTV 511
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+YT +I N A I+ QM + CSP++VT V+AY G EA + EM
Sbjct: 512 NYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEM 571
Query: 257 AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
KKG +I D +NT++D + + D + K M
Sbjct: 572 ------------KKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHM 606
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 126/257 (49%), Gaps = 16/257 (6%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD+ + A++ ++ E ++LQ++K+ G +P+ Y ++++ K +
Sbjct: 227 QPDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEK 286
Query: 114 FFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++ +P A+ +VN REG+ AV E M+ +G + Y + + C
Sbjct: 287 MLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFC 346
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMK-NFCSPNL 230
+ GK +A+ +D++ + +P VV+Y LI+ C+D G+I++A + M+ N + +
Sbjct: 347 NVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCID-GHIESAFRLLRLMEGNGLAADQ 405
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T N+++ A + G +EA LF + EY +G + P+ TFNT+++
Sbjct: 406 YTYNVLIDALCKTGKVDEACSLFDGL---------EY--RG-IRPNSVTFNTVINGLCKG 453
Query: 291 KRWDDLELVYKRMLHHG 307
++D ++M+ G
Sbjct: 454 GKFDVACTFLEKMVSAG 470
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 109/248 (43%), Gaps = 19/248 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P YNA++ A RR A L + + G +P A T+ ++ + ++ +
Sbjct: 127 PTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQDL 186
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F K+ + + +A++Y L+ G+ DEA+ ++E+ + AA L + LC
Sbjct: 187 FDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQPDMYTHAA----LVKGLCD 242
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
A + EE L + K+ ++ +P +Y L+ + A + N+M N P VT
Sbjct: 243 ARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVT 302
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEK 291
C +V AY G A+++F+ M K P+++T+N M+ C K
Sbjct: 303 CTAVVNAYCREGRMSGAVRVFESM------------KLKGCEPNVWTYNAMVQGFCNVGK 350
Query: 292 RWDDLELV 299
+ + L+
Sbjct: 351 VYKAMALL 358
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 3/142 (2%)
Query: 55 PDIVVYNAVL-NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
PD Y+ + N C + EG ++ + L Q+ KPS Y +V++ + Y L
Sbjct: 473 PDTYTYSPFIENLCKTKGSREGLSFIDEML-QKDVKPSTVNYTIVIDRLFKERNYGLATR 531
Query: 114 FF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ + V P+ + Y V EG+ EA + V +M++ GI+ A Y L
Sbjct: 532 IWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHT 591
Query: 173 SAGKCEEALMQMDKICKVANKP 194
S GK + A+ + + VA+ P
Sbjct: 592 SIGKTDHAVTILKHMTGVASMP 613
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 93/243 (38%), Gaps = 22/243 (9%)
Query: 90 PSATTYGLVMEVMLACGKYNLVYE---FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAV 146
P+ TY ++ + C + +L + V+ + P+A + L+ R + D A
Sbjct: 127 PTGATYNALIRAL--CRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQ 184
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
+ M RG A Y L C G+ +EAL ++ + +P + ++ L++
Sbjct: 185 DLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEAL----ELFRELEQPDMYTHAALVKGL 240
Query: 207 LDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
D+ + Y+ +MK P +V + EEA K+ EM ++
Sbjct: 241 CDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNG----- 295
Query: 266 EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRA 325
++P T +++A E R V++ M G N + M+
Sbjct: 296 -------LVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNV 348
Query: 326 GKV 328
GKV
Sbjct: 349 GKV 351
>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
Length = 838
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 125/278 (44%), Gaps = 14/278 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
PD++ YN +++A ++ ++ A +L + P+ TY L+++ G
Sbjct: 94 FHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAE 153
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F +++K + P+A+ Y ++ L + G T +AV E M+R S A Y L
Sbjct: 154 AVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLY 213
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
A K AL ++ KP + ++T L+ A G + A IF Q++ P++
Sbjct: 214 GKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDV 273
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
N +++AY G A ++F M H+ E PD ++N M+DA
Sbjct: 274 YAYNALMEAYSRAGFPYGAAEIFSLM----QHMGCE--------PDRASYNIMVDAYGRA 321
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+D + V++ M G+ K H+ ++ SRAGKV
Sbjct: 322 GLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKV 359
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 133/328 (40%), Gaps = 42/328 (12%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S +PD + Y + GQ K L+ KK ++ LE + R P Y
Sbjct: 93 SFHPDVICYNLLIDAYGQ----KSLY-----------KKAESTYLELLEARCVPTEDTYA 137
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
+L A E A V ++++ G PSA Y ++ ++ G E F ++++
Sbjct: 138 LLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRD 197
Query: 122 YI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
P+ Y +L+N + K+ A+ +M + + + L G CE+A
Sbjct: 198 RCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKA 257
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
+++ + +P V +Y L++A +G AA IF+ M++ C P+ + NIMV A
Sbjct: 258 EEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDA 317
Query: 240 YLEHGLFEEAMKLFQEM------------------------AEDSNHINREYDKKGLVIP 275
Y GL E+A +F+ M I + K G + P
Sbjct: 318 YGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSG-IKP 376
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRM 303
D + N+ML+ +++ +E V M
Sbjct: 377 DTFVLNSMLNLYGRLGQFEKMEEVLTAM 404
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 85/381 (22%), Positives = 147/381 (38%), Gaps = 42/381 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P T Y + G+A V MRS + +P+I + A++
Sbjct: 201 PSTATYTMLINLYGKASKSYMALKVFHEMRS---------------QKCKPNICTFTALV 245
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
NA R E A + +QL++ G +P Y +ME G E F +Q
Sbjct: 246 NAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCE 305
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG---KCEEA 180
P+ +Y ++V+ R G ++A + E M+R GI + + L AG KCEE
Sbjct: 306 PDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEI 365
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NLVTCNIMVKA 239
+ QM K KP ++ G + + M+ P ++ T NI++
Sbjct: 366 VNQMH---KSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINI 422
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
Y G F +LF+ + + +IPD+ T+ + + A + K+++ V
Sbjct: 423 YGRAGFFARMEELFRSLPARN------------LIPDVVTWTSRIGAYSRRKQYNRCLEV 470
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITW-EHLARADRITPPALIKERFCNRL 358
++ M+ G + + ++L KV + ++ A +P A I L
Sbjct: 471 FEEMIDAGCYPDGGTAKNVLL------KVAIFMASFLVGSASPSPFSPTAPILGSILRSL 524
Query: 359 ENKDYGSAISCLVSHPVSGSP 379
++ A L P SG P
Sbjct: 525 GFRELSVAAYSLTESPWSGGP 545
>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Glycine max]
Length = 564
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 126/302 (41%), Gaps = 33/302 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD VA+ + +L + E DS++ R EPD+VVY +++
Sbjct: 246 PDMVAFSIVISSLCKKRRANEAQSFFDSLKH----------------RFEPDVVVYTSLV 289
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ R A V +K G KP+ TY +V++ + CG+ ++ F + +
Sbjct: 290 HGWCRAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCD 349
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PNA+ + L+ + G+T++ + M+R G Y + C EEA
Sbjct: 350 PNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADTISYNFIIESHCRDENLEEAAKI 409
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
++ + K P ++ + ++ A ++ +MK C PN +T NI+++ + E
Sbjct: 410 LNLMVKKGVAPNASTFNFIFGCIAKLHDVNGAHRMYARMKELNCQPNTLTYNILMRMFAE 469
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ +K+ +EM E V P++ T+ ++ K W++ YK
Sbjct: 470 SRSTDMVLKMKKEMDESQ------------VEPNVNTYRILISMFCDMKHWNN---AYKL 514
Query: 303 ML 304
M+
Sbjct: 515 MM 516
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 103/252 (40%), Gaps = 13/252 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+E + ++A++ VR A +++ G P + +V+ + + N
Sbjct: 209 VEITVHTFSALVRRYVRAGLAAEAVHAFNRMEDYGCTPDMVAFSIVISSLCKKRRANEAQ 268
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
FF ++ + P+ + Y LV+ R G +A DM+ GI + Y + LC
Sbjct: 269 SFFDSLKHRFEPDVVVYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDSLC 328
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLV 231
G+ A ++ P V++ L++ + +G + ++NQMK C + +
Sbjct: 329 RCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADTI 388
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
+ N +++++ EEA K+ M KKG V P+ TFN + A
Sbjct: 389 SYNFIIESHCRDENLEEAAKILNLMV-----------KKG-VAPNASTFNFIFGCIAKLH 436
Query: 292 RWDDLELVYKRM 303
+ +Y RM
Sbjct: 437 DVNGAHRMYARM 448
>gi|297734265|emb|CBI15512.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 100/204 (49%), Gaps = 2/204 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P ++ N +LN ++ + + V +++++ G P+ T+ ++ V+ G V +F
Sbjct: 221 PTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKF 280
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+++ + P+ + Y L+N+ R+G+ D+A + M RRG+V Y L LC
Sbjct: 281 LEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCK 340
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVT 232
G+ EA ++ P +V+Y LI G +Q + + + M N SP+ T
Sbjct: 341 EGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFT 400
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEM 256
C ++V+ Y + G F A+ L E+
Sbjct: 401 CWVLVEGYGKEGKFLSALNLVVEL 424
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 13/196 (6%)
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F R ++ ++P + L+N L + TD E+MER GI + + L LC
Sbjct: 211 FRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCK 270
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G + ++K+ + P +V+Y LI + G + +A Y++ M + P+LV+
Sbjct: 271 DGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVS 330
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
++ + G EA +LF M +GL PDI T+NT++ E +
Sbjct: 331 YTALMNGLCKEGRVREAHQLFHRMVH-----------RGLS-PDIVTYNTLIHGYCKEGK 378
Query: 293 WDDLELVYKRMLHHGL 308
+ + M+ +G+
Sbjct: 379 MQESRSLLHDMIWNGI 394
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 7/227 (3%)
Query: 39 KKFKTGTLERWDPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSAT 93
K TG + ++ ++E PDIV YN ++N+ R+ + + AF++ + + ++G P
Sbjct: 270 KDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLV 329
Query: 94 TYGLVMEVMLACGKYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM 152
+Y +M + G+ ++ F R V + P+ + Y L++ +EGK E+ S + DM
Sbjct: 330 SYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDM 389
Query: 153 ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI 212
GI + + L GK AL + ++ + Y+ LI A
Sbjct: 390 IWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRP 449
Query: 213 QNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
A + +M K+ P L N ++K++ + EA+ L EM +
Sbjct: 450 FAAKNLLERMSKDGHKPELEIYNELIKSFCQCDCIAEALLLKMEMVD 496
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/289 (20%), Positives = 116/289 (40%), Gaps = 31/289 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y ++ L + G ++E + M + R L PDIV YN ++
Sbjct: 326 PDLVSYTALMNGLCKEGRVREAHQLFHRM------------VHRG---LSPDIVTYNTLI 370
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + + + + +L + G P + T +++E GK+ ++Q+ +
Sbjct: 371 HGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVS 430
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ Y L+ L RE + A + +E M + G +Y +L + C EAL+
Sbjct: 431 ISQDIYSYLIVALCRENRPFAAKNLLERMSKDGHKPELEIYNELIKSFCQCDCIAEALLL 490
Query: 184 MDKICKVANKPLVVSYTGLIQACLD--SGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241
++ KP + +Y +I CL S +++ + + + + P+L C + Y
Sbjct: 491 KMEMVDKEIKPNLATYRAVI-GCLSRLSRSMEGESLVGEMVASGMLPDLEICRALFYGYC 549
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
++A L A K I D +FN ++ +A+
Sbjct: 550 RENDIDKAESLLSFFA------------KEFQIHDTESFNALIRITSAK 586
>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 127/278 (45%), Gaps = 14/278 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+P I+ + ++N + ++ A + + +G +P TY ++ + G+
Sbjct: 157 LQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAA 216
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+K+ + P+ + Y L+++L ++ +EA+ M+ +GI + Y L + L
Sbjct: 217 GLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGL 276
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
CS + +EA ++++ + P +V+++ LI GN+ A + M PN+
Sbjct: 277 CSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNV 336
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T N ++ Y EA KLF M I R PD+++++ +++
Sbjct: 337 ITYNSLMHGYSLQMEVVEARKLFDVM------ITRGCK------PDVFSYSILINGYCMV 384
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
KR D+ + ++ M+H GL N + +I + GK+
Sbjct: 385 KRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKL 422
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 117/261 (44%), Gaps = 15/261 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVL-QQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
P I+ +N +L+A VR +Q+ A L +Q++ G P+ T +++ +L +
Sbjct: 88 PCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFS 147
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
KV K + P + + L+N L + G+ +A+ +DM RG Y + LC
Sbjct: 148 VLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLC 207
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLV 231
G+ A + K+ +V +P VV+Y+ LI + + A IF+ MK SP +V
Sbjct: 208 KMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVV 267
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
+ +++ ++EA + EM + ++PDI TF+ ++D E
Sbjct: 268 SYTSLIQGLCSFSRWKEASAMLNEMTSLN------------IMPDIVTFSLLIDIFCKEG 315
Query: 292 RWDDLELVYKRMLHHGLHFNA 312
+ + V K M G+ N
Sbjct: 316 NVLEAQGVLKTMTEMGVEPNV 336
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 113/258 (43%), Gaps = 17/258 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + + + G++ E V+ +M + +EP+++ YN+++
Sbjct: 299 PDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMG---------------VEPNVITYNSLM 343
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + A + + +G KP +Y +++ + + + F + + +
Sbjct: 344 HGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLT 403
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN ++Y L++ + GK EA +DM G + Y L C G +A
Sbjct: 404 PNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRL 463
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ KP +V YT LI + SGN+ +A +F+++ + P++ ++ +
Sbjct: 464 FRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCK 523
Query: 243 HGLFEEAMKLFQEMAEDS 260
GL +EA++ F++M ED
Sbjct: 524 EGLLDEALEAFRKMEEDG 541
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 2/207 (0%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD+ Y+ ++N K+ + A + ++ QG P+ +Y ++ GK E
Sbjct: 368 KPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARE 427
Query: 114 FFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F+ + + Y+P+ Y VL+ ++G +A M+ + + +Y L +C
Sbjct: 428 LFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMC 487
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLV 231
+G A ++ +P V YT +I G + A F +M+ + C PN
Sbjct: 488 KSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEF 547
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAE 258
+ N++++ +L+H A++L EM +
Sbjct: 548 SYNVIIRGFLQHKDESRAVQLIGEMRD 574
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/304 (19%), Positives = 130/304 (42%), Gaps = 34/304 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIK---ELFD----------------VIDSMRSLPKKKFKTGT 45
P + + ++ L +AG ELFD +I+ + + + G
Sbjct: 159 PTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGL 218
Query: 46 LERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+++ + +PD+V Y+ ++++ + + A + +K +G P+ +Y +++ + +
Sbjct: 219 IKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCS 278
Query: 105 CGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
++ ++ + +P+ + + +L++ +EG EA ++ M G+ +
Sbjct: 279 FSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVIT 338
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y L + EA D + KP V SY+ LI I A +FN+M
Sbjct: 339 YNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMI 398
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+PN V+ ++ A+ + G EA +LF++M H N +PD+ T++
Sbjct: 399 HQGLTPNTVSYTTLIHAFCQLGKLREARELFKDM-----HTNG-------YLPDLCTYSV 446
Query: 283 MLDA 286
+L+
Sbjct: 447 LLEG 450
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 77/173 (44%), Gaps = 1/173 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P+ V Y +++A + + A + + + G P TY +++E G +
Sbjct: 402 LTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAF 461
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
FR +Q +Y+ PN + Y +L++++ + G + A ++ G+ +Y + L
Sbjct: 462 RLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGL 521
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
C G +EAL K+ + P SY +I+ L + A + +M++
Sbjct: 522 CKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRD 574
Score = 44.7 bits (104), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 21/176 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKKFKTGTLERW------------ 49
P+TV+Y ++ Q G ++E ++ M + LP + LE +
Sbjct: 404 PNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRL 463
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L+P++V+Y ++++ + A + +L G +P Y ++ +
Sbjct: 464 FRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCK 523
Query: 105 CGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
G + E FRK+++ P N +Y V++ + AV + +M +G V
Sbjct: 524 EGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVA 579
>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 132/311 (42%), Gaps = 37/311 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y ++ G ++++ +I M+ L+P++ YN+++
Sbjct: 8 PDVVSYSTVINGYCLGGELQKVLKLIQEMQM---------------KGLKPNLYTYNSII 52
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + A VL+++ QG P Y +++ G Y+ F +++K I
Sbjct: 53 LLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIV 112
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ +AY ++ L R GK EA M RG+ Y L C +G+ E+A
Sbjct: 113 PDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSL 172
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP----NLVTCNIMVKA 239
+++ + P VV+YT L G + A + ++M C N+ T N +V
Sbjct: 173 HNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEM---CGKGLQLNICTYNSLVNG 229
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLEL 298
+ G +A+KL +EM + PD TF T++DA C + EL
Sbjct: 230 LCKSGNIRQAVKLMEEMEVAGMY------------PDTITFTTLMDAYCKTGEMVKAHEL 277
Query: 299 VYKRMLHHGLH 309
+ + ML GL
Sbjct: 278 L-REMLDRGLQ 287
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/336 (20%), Positives = 138/336 (41%), Gaps = 40/336 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV Y ++ + G+I+ + + D M R+ PD + Y AV+
Sbjct: 78 PDTVVYTTLIDGFCKLGNIQAAYKLFDEMEK---------------QRIVPDFIAYTAVI 122
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
R + A V ++ +G +P TY +++ G+ + + VQ
Sbjct: 123 CGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLT 182
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L + L + G+ D A + +M +G+ + Y L LC +G +A+
Sbjct: 183 PNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKL 242
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
M+++ P +++T L+ A +G + A + +M + P ++T N+++ +
Sbjct: 243 MEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCM 302
Query: 243 HGLFEEAMKLFQEMAEDS--------NHINREY-----------DKKGL----VIPDIYT 279
G+ E+ +L M E N + ++Y KG+ V+PD T
Sbjct: 303 SGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNT 362
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
+N ++ + + ++K M G + A +
Sbjct: 363 YNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSY 398
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 136/313 (43%), Gaps = 29/313 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y SI + L ++G + D+ R L E + + PD VVY ++
Sbjct: 43 PNLYTYNSIILLLCKSGKVD------DAERVLR---------EMINQGIVPDTVVYTTLI 87
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + + A+ + ++++Q P Y V+ + CGK + F K+ +
Sbjct: 88 DGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVE 147
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ + G+ ++A S M + G+ + Y LA LC G+ + A
Sbjct: 148 PDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANEL 207
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ ++C + + +Y L+ SGNI+ A + +M+ P+ +T ++ AY +
Sbjct: 208 LHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCK 267
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +A +L +EM + +GL P + TFN +++ +D E +
Sbjct: 268 TGEMVKAHELLREMLD-----------RGLQ-PTVITFNVLMNGFCMSGMLEDGERLLAW 315
Query: 303 MLHHGLHFNAKRH 315
ML G+ N +
Sbjct: 316 MLEKGIMPNTTTY 328
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 101/248 (40%), Gaps = 14/248 (5%)
Query: 83 LKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGK 141
+K +G P +Y V+ G+ V + +++Q K PN Y ++ L + GK
Sbjct: 1 MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60
Query: 142 TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
D+A + +M +GIV +Y L C G + A D++ K P ++YT
Sbjct: 61 VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTA 120
Query: 202 LIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
+I G + A +FN+M P+ VT ++ Y + G E+A L +M +
Sbjct: 121 VICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSG 180
Query: 261 NHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMIL 320
+ P++ T+ + D + D + M GL N + ++
Sbjct: 181 ------------LTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVN 228
Query: 321 DASRAGKV 328
++G +
Sbjct: 229 GLCKSGNI 236
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 58/290 (20%), Positives = 112/290 (38%), Gaps = 32/290 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
P+ V Y ++A L + G + +++ M SL K+G + +
Sbjct: 183 PNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKL 242
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVM 99
+E PD + + +++A + + A +L+++ +G +P+ T+ G M
Sbjct: 243 MEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCM 302
Query: 100 EVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
ML G+ L + ++K +PN Y L+ + M RG++
Sbjct: 303 SGMLEDGERLLAW----MLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMP 358
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219
+ Y L + C A +EA ++ + SY +I+ I A +F
Sbjct: 359 DSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELF 418
Query: 220 NQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS--NHINRE 266
+M + + + N+ V G E A++L E E+ N I +E
Sbjct: 419 EEMRREGMAADAEIYNLFVDISYGEGNMETALELCDEAIENCFLNRIKKE 468
>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 140/316 (44%), Gaps = 29/316 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y I +G++ I+++ + + M + K +K+ V YN ++
Sbjct: 799 PDEFTYHLILDAMGKSMRIEDMLKIQEEMHN---KGYKS------------TYVTYNTII 843
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ V+ K + A + QL +G P+ TYG +++ +L G F ++ +
Sbjct: 844 SGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCE 903
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y +L+N G T++ E M +G+ Y + LC+ G+ + L
Sbjct: 904 PNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSY 963
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + +P +++Y LI SG ++ A ++N M K +PNL T N ++ +
Sbjct: 964 FKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGK 1023
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G EA K+++E+ KG P+++T+N ++ + ++ Y R
Sbjct: 1024 AGKAAEAGKMYEELL-----------AKGWK-PNVFTYNALIRGYSVSGSPENAFAAYGR 1071
Query: 303 MLHHGLHFNAKRHLRM 318
M+ G N+ ++++
Sbjct: 1072 MIVGGCRPNSSTYMQL 1087
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 127/282 (45%), Gaps = 22/282 (7%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKY 108
+PD Y+ +L+A + + E + +++ +G K + TY GLV ML
Sbjct: 798 DPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLD-EAI 856
Query: 109 NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
NL Y+ + + + P Y L++ L ++G ++A + ++M G + A+Y L
Sbjct: 857 NLYYQL---MSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILL 913
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CS 227
AG E+ + + + P + SYT +I G + + F Q+ +
Sbjct: 914 NGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLE 973
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P+L+T N+++ + G EEA+ L+ +M +KKG + P++YT+N+++
Sbjct: 974 PDLITYNLLIHGLGKSGRLEEALSLYNDM-----------EKKG-IAPNLYTYNSLILYL 1021
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + +Y+ +L G N + +I S +G E
Sbjct: 1022 GKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPE 1063
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 39/295 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ G +G + + ++ +++++ ++V Y A +
Sbjct: 309 PDRVTYITLLDKCGDSGDSRSVSEIWNALKA---------------DGYNDNVVSYTAAV 353
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+A + + + A V ++KQ+G P +Y ++ L ++N E F +
Sbjct: 354 DALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPT 413
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV-----GSAALYYDLARCLCSAGKCE 178
PN + + +N + G++ +A+ E M+ +GIV G+A LY L G+
Sbjct: 414 PNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLY-----GLAKTGRLG 468
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMV 237
A ++ + P ++YT +I+ C + N A IF +M +N C+P+++ N ++
Sbjct: 469 MAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLI 528
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+ G EA K+F E+ E +N E P T+NT+L E +
Sbjct: 529 DMLYKAGRGNEAWKIFYELKE----MNLE--------PTDCTYNTLLAGLGREGK 571
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 127/293 (43%), Gaps = 21/293 (7%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY----NLVYEF 114
YN ++ V+ A V + + G P+ TY ++M LA GK +V
Sbjct: 173 TYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLM---LAFGKRRDAETVVGLL 229
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ PN +Y + + L + G+ +EA + ME G L + LC A
Sbjct: 230 GEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDA 289
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTC 233
G+ +A K+ KP V+Y L+ C DSG+ ++ + I+N +K + + N+V+
Sbjct: 290 GRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSY 349
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
V A + G +EA+ +F EM + KG +IP Y++N+++ R+
Sbjct: 350 TAAVDALCQVGRVDEALDVFDEMKQ-----------KG-IIPQQYSYNSLISGFLKADRF 397
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
+ ++ M HG N H+ I ++G+ L + L ++ I P
Sbjct: 398 NRALELFNHMNIHGPTPNGYTHVLFINYHGKSGE-SLKALKRYELMKSKGIVP 449
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/252 (19%), Positives = 105/252 (41%), Gaps = 16/252 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD VA ++ L + G + V ++++ + PD + Y ++
Sbjct: 449 PDVVAGNAVLYGLAKTGRLGMAKRVFHELKAM---------------GISPDNITYTMMI 493
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
C + + A + ++ + P +++++ G+ N ++ F ++++ +
Sbjct: 494 KCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLE 553
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P Y L+ L REGK E + +E M + Y + CLC G+ AL
Sbjct: 554 PTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDM 613
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
+ + P + SY ++ + + A ++F QMK +P+ T ++ +++
Sbjct: 614 LYSMTMNGCMPDLSSYNTVMYGLVKEDRLDEAFWMFCQMKKVLAPDYATVCTILPSFVRS 673
Query: 244 GLFEEAMKLFQE 255
GL +EA+ +E
Sbjct: 674 GLMKEALHTVRE 685
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/281 (19%), Positives = 125/281 (44%), Gaps = 24/281 (8%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNL 110
D + + ++ + K+ A ++++ + G +Y GLV E ++ ++
Sbjct: 730 DDLFLSPIIRHLCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLI-----DI 784
Query: 111 VYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
E F ++++ P+ Y ++++ + + + ++ + E+M +G + Y +
Sbjct: 785 AEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIIS 844
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSP 228
L + +EA+ ++ P +Y L+ L GNI++A +F++M + C P
Sbjct: 845 GLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEP 904
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
N NI++ Y G E+ +LF+ M E + PDI ++ ++D
Sbjct: 905 NCAIYNILLNGYRIAGDTEKVCELFESMVEQGMN------------PDIKSYTVVIDTLC 952
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
A+ R +D +K++ GL + + +I ++G++E
Sbjct: 953 ADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLE 993
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/338 (22%), Positives = 142/338 (42%), Gaps = 50/338 (14%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKF----------KTGTLER 48
M+ P Y ++ LG+ G +KE+ +++ M S P K G +
Sbjct: 550 MNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNY 609
Query: 49 WDPRL--------EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
L PD+ YN V+ V+ + + AFW+ Q+K K A Y V
Sbjct: 610 ALDMLYSMTMNGCMPDLSSYNTVMYGLVKEDRLDEAFWMFCQMK----KVLAPDYATVCT 665
Query: 101 VMLACGKYNLVYEFFRKVQK------SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
++ + + L+ E V++ S + + + ++ L R+G T++++ E++
Sbjct: 666 ILPSFVRSGLMKEALHTVREYILQPDSKVDRSSVHSLMEGILKRDG-TEKSIEFAENIAS 724
Query: 155 RGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV---SYTGLIQACLDSGN 211
G++ + R LC K +EAL + + K N + + SY LI +D
Sbjct: 725 SGLLLDDLFLSPIIRHLC---KHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDL 781
Query: 212 IQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270
I A +F++MK C P+ T ++++ A + E+ +K+ +EM N+ Y
Sbjct: 782 IDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMH------NKGYKST 835
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
T+NT++ K D+ +Y +++ G
Sbjct: 836 ------YVTYNTIISGLVKSKMLDEAINLYYQLMSEGF 867
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 103/235 (43%), Gaps = 21/235 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE- 113
PD+V NAVL + + A V +LK G P TY ++++ C K + E
Sbjct: 449 PDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIK---CCSKASNADEA 505
Query: 114 ---FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
F ++ P+ LA L++ L++ G+ +EA +++ + + Y L
Sbjct: 506 MKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAG 565
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA-YIFNQMKNFCSPN 229
L GK +E + ++ + + P +++Y ++ +G + A +++ N C P+
Sbjct: 566 LGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPD 625
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
L + N ++ ++ +EA +F +M K ++ PD T T+L
Sbjct: 626 LSSYNTVMYGLVKEDRLDEAFWMFCQM-------------KKVLAPDYATVCTIL 667
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/311 (20%), Positives = 130/311 (41%), Gaps = 18/311 (5%)
Query: 43 TGTLERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
G L + R + P++ Y + + + E A+ +L++++++G KP T +++++
Sbjct: 226 VGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQI 285
Query: 102 MLACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ G+ + F K++ S P+ + Y L++ G + ++ G +
Sbjct: 286 LCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDN 345
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y LC G+ +EAL D++ + P SY LI L + A +FN
Sbjct: 346 VVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFN 405
Query: 221 QMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
M + +PN T + + + + G +A+K ++ M K ++PD+
Sbjct: 406 HMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELM------------KSKGIVPDVVA 453
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHL 338
N +L A R + V+ + G+ + + MI S+A E ++I E +
Sbjct: 454 GNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMI 513
Query: 339 ARADRITPPAL 349
+R P L
Sbjct: 514 --ENRCAPDVL 522
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 104/269 (38%), Gaps = 49/269 (18%)
Query: 98 VMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
++E+M A G+ V + F +Q+ I N + + + EG A A+ M+ G
Sbjct: 107 MLELMRAHGRVGDVAQVFDLMQRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAG 166
Query: 157 IVGSAALYYDLARCLCSAGKCEEAL-----MQMDKICKVAN------------------- 192
IV +A Y L L +G EA+ M D +
Sbjct: 167 IVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVV 226
Query: 193 -----------KPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
+P V SYT I+ +G ++ A I +M + C P++VT ++++
Sbjct: 227 GLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQIL 286
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ G +A +F +M + D+K PD T+ T+LD C + ++
Sbjct: 287 CDAGRLADAKDVFWKM--------KASDQK----PDRVTYITLLDKCGDSGDSRSVSEIW 334
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ G + N + + + G+V+
Sbjct: 335 NALKADGYNDNVVSYTAAVDALCQVGRVD 363
>gi|297736961|emb|CBI26162.3| unnamed protein product [Vitis vinifera]
Length = 636
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 123/309 (39%), Gaps = 29/309 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y+ + L + G E F V ++ D PD V+Y ++
Sbjct: 330 PDIFTYQEVVNGLCKGGKGPEGFRVFKDLK---------------DRGYAPDRVMYTTMI 374
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ R K A + ++ Q+G P+ TY ++ G ++ +R++ K Y
Sbjct: 375 HGLCRMKWLGDARKLWFEMIQKGFLPNEYTYNAMIHGYFKIGNLEEAWKMYREMCDKGYG 434
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
++Y V++ L GK EA E+M +GI+ + Y L R C GK E
Sbjct: 435 EKTVSYNVMIKGLCSHGKIKEAHDLFEEMSHKGILRNHITYNALVRGFCKEGKIVEGANL 494
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+ ++ +P SY LI G++QNA +++ M+N P + T + M+ + +
Sbjct: 495 LYELLDQGIQPSAASYAPLIDKLCQEGDMQNAKILWDDMQNRGMEPAVCTHDFMITGFCK 554
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G E M+ M + P +F +++ + R DD LV
Sbjct: 555 QGCAMEGMEWLTTMLRSK------------LRPQKKSFESLIQCLSQIDRLDDALLVLDS 602
Query: 303 MLHHGLHFN 311
ML G +
Sbjct: 603 MLKIGFRLS 611
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 120/280 (42%), Gaps = 20/280 (7%)
Query: 79 VLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLW 137
+L+++ + G P + ++ Y V + + ++ P+ Y+ +VN L
Sbjct: 284 LLRRVLEDGVVPRNAAFNKLISGFCKDKAYGRVSDLLHSMIARNRAPDIFTYQEVVNGLC 343
Query: 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV 197
+ GK E +D++ RG +Y + LC +A ++ + P
Sbjct: 344 KGGKGPEGFRVFKDLKDRGYAPDRVMYTTMIHGLCRMKWLGDARKLWFEMIQKGFLPNEY 403
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
+Y +I GN++ A ++ +M K + V+ N+M+K HG +EA LF+E
Sbjct: 404 TYNAMIHGYFKIGNLEEAWKMYREMCDKGY-GEKTVSYNVMIKGLCSHGKIKEAHDLFEE 462
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKRMLHHGLHFNAKR 314
M+ KG++ I T+N ++ C K + L+Y+ +L G+ +A
Sbjct: 463 MSH-----------KGILRNHI-TYNALVRGFCKEGKIVEGANLLYE-LLDQGIQPSAAS 509
Query: 315 HLRMILDASRAGKVELLEITWEHLARADRITPPALIKERF 354
+ +I + G ++ +I W+ + +R PA+ F
Sbjct: 510 YAPLIDKLCQEGDMQNAKILWDDM--QNRGMEPAVCTHDF 547
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 115/314 (36%), Gaps = 54/314 (17%)
Query: 74 EGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF------------------ 115
E A V QLK G S T+ V+ + G+ + V+E +
Sbjct: 209 EEAISVFGQLKGIGVCASIATWNSVLRGSVRAGRIDFVWELYGEMVESSVVADVHTVGYL 268
Query: 116 ------------------RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
R ++ +P A+ L++ ++ + M R
Sbjct: 269 VQAFCDENRISDGHNLLRRVLEDGVVPRNAAFNKLISGFCKDKAYGRVSDLLHSMIARNR 328
Query: 158 VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217
Y ++ LC GK E + P V YT +I + +A
Sbjct: 329 APDIFTYQEVVNGLCKGGKGPEGFRVFKDLKDRGYAPDRVMYTTMIHGLCRMKWLGDARK 388
Query: 218 IFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
++ +M K F PN T N M+ Y + G EEA K+++EM + + Y +K +
Sbjct: 389 LWFEMIQKGFL-PNEYTYNAMIHGYFKIGNLEEAWKMYREMCD------KGYGEKTV--- 438
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK-VELLEIT 334
++N M+ + + + +++ M H G+ N + ++ + GK VE +
Sbjct: 439 ---SYNVMIKGLCSHGKIKEAHDLFEEMSHKGILRNHITYNALVRGFCKEGKIVEGANLL 495
Query: 335 WEHLARADRITPPA 348
+E L + I P A
Sbjct: 496 YELLDQG--IQPSA 507
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/187 (17%), Positives = 75/187 (40%), Gaps = 16/187 (8%)
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
Q + P++ + VL + L G + A S ++ S Y RCLC G E
Sbjct: 153 QSGFSPDSSSCNVLFDALVEAGACNAAKSFLDSTNFNPKPASLEAY---IRCLCKGGLVE 209
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMV 237
EA+ ++ + + ++ +++ + +G I ++ +M ++ ++ T +V
Sbjct: 210 EAISVFGQLKGIGVCASIATWNSVLRGSVRAGRIDFVWELYGEMVESSVVADVHTVGYLV 269
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+A+ + + L + + ED V+P FN ++ +K + +
Sbjct: 270 QAFCDENRISDGHNLLRRVLEDG------------VVPRNAAFNKLISGFCKDKAYGRVS 317
Query: 298 LVYKRML 304
+ M+
Sbjct: 318 DLLHSMI 324
>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 740
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 129/306 (42%), Gaps = 29/306 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y + + G ++E +V+D M L + V YN ++
Sbjct: 440 PNVITYTILIDRFCKEGRLEEARNVLDEMSG---------------KGLALNAVGYNCLI 484
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+A + ++ + A + + +G KP T+ ++ + K+ ++ + + I
Sbjct: 485 SALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVI 544
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + Y L++ R G EA+ V DM RG Y L + LC AG E+ L
Sbjct: 545 ANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLAL 604
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMKNFCSPNLVTCNIMVKAYLE 242
+ + P +S LI +GNIQ+A ++ + + +P++VT N ++ +
Sbjct: 605 FEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCK 664
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +EA+ LF ++ + + PD T+NT++ E +DD L+ R
Sbjct: 665 TGRAQEALNLFDKLQVEG------------ICPDAITYNTLISWHCKEGMFDDAHLLLSR 712
Query: 303 MLHHGL 308
+ G
Sbjct: 713 GVDSGF 718
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/395 (21%), Positives = 151/395 (38%), Gaps = 98/395 (24%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP YN VL+ + + V ++ +G P+ T+G+VM+ + + +
Sbjct: 197 EPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACA 256
Query: 114 FFRKVQK-SYIPNALAYKVLVNTLWREGKTD----------------------------- 143
+ + + +PNA+ Y+ L++ L + G+ +
Sbjct: 257 LLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLC 316
Query: 144 ------EAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI---------- 187
EA V+ M RG ++ Y L LC GK +EA M ++K+
Sbjct: 317 KMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNT 376
Query: 188 ----------------------CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-N 224
V P + +Y LI G + +A + N+M+
Sbjct: 377 LINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIK 436
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA------------------------EDS 260
C PN++T I++ + + G EEA + EM+ +D+
Sbjct: 437 GCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDA 496
Query: 261 NHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMIL 320
++ + KG PDI+TFN+++ ++++ +Y+ ML G+ N + +I
Sbjct: 497 LNMFGDMSSKG-CKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIH 555
Query: 321 DASRAGKV-ELLEITWEHLARA---DRITPPALIK 351
R G + E L++ + L R D IT LIK
Sbjct: 556 AFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIK 590
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 121/291 (41%), Gaps = 49/291 (16%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDI YN ++ ++ A ++ +++ +G +P+ TY ++++ G+
Sbjct: 405 PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 464
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ K NA+ Y L++ L ++ K +A++ DM +G + L LC
Sbjct: 465 LDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCK 524
Query: 174 AGKCEEAL----------------------------MQMDKICKVANKPLV-------VS 198
K EEAL M + K+ N L ++
Sbjct: 525 VNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDIT 584
Query: 199 YTGLIQACLDSGNIQNAAYIF-NQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y GLI+A +GNI+ +F + M +PN ++CNI++ G + A++ ++M
Sbjct: 585 YNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMI 644
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+GL PDI T+N++++ R + ++ ++ G+
Sbjct: 645 H-----------RGLT-PDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGI 683
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 122/312 (39%), Gaps = 52/312 (16%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+ +N ++ + + A ++ ++ +G P++ TYG++M + GK +
Sbjct: 303 PDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARML 362
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEA----------------------------- 145
KV PN + + L+N G+ DEA
Sbjct: 363 LNKVPN---PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCK 419
Query: 146 ----VSAVE---DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
VSA E +M+ +G + Y L C G+ EEA +D++ V
Sbjct: 420 KGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVG 479
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y LI A +Q+A +F M + C P++ T N ++ + FEEA+ L+Q+M
Sbjct: 480 YNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML 539
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
+ VI + T+NT++ A + + ML G + +
Sbjct: 540 LEG------------VIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNG 587
Query: 318 MILDASRAGKVE 329
+I RAG +E
Sbjct: 588 LIKALCRAGNIE 599
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 122/281 (43%), Gaps = 28/281 (9%)
Query: 89 KPSATTYGLVMEVMLACGKYNLVYE-FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVS 147
+P+ +Y +V++V+LA +V F+ + K P + V++ L + D A +
Sbjct: 197 EPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACA 256
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
++DM R G V +A +Y L L G+ E L ++++ + P V ++ I
Sbjct: 257 LLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLC 316
Query: 208 DSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
I AA + ++M + F +PN T +++ G +EA L ++
Sbjct: 317 KMLRIHEAAKLVDRMLLRGF-TPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN------- 368
Query: 266 EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV-YKRMLHHGLHFNAKRHLRMILDASR 324
P++ FNT+++ + R D+ + V ++ ML G + + +IL +
Sbjct: 369 ---------PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCK 419
Query: 325 AGKV----ELLEITWEHLARADRITPPALIKERFC--NRLE 359
G + EL+ + IT LI +RFC RLE
Sbjct: 420 KGYLVSARELMNEMQIKGCEPNVITYTILI-DRFCKEGRLE 459
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 21/156 (13%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLER----- 48
D + Y + L +AG+I++ + + M S L +TG ++
Sbjct: 581 DDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFL 640
Query: 49 ---WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
L PDIV YN+++N + + + A + +L+ +G P A TY ++
Sbjct: 641 RDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKE 700
Query: 106 GKYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREG 140
G ++ + R V +IPN + + +LV+ +EG
Sbjct: 701 GMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEG 736
>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Vitis vinifera]
Length = 898
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 141/331 (42%), Gaps = 44/331 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ L +A + E ++ + + R P YN ++
Sbjct: 298 PDDVTYTSMIGVLCKANRLDEAVELFEQLEQ---------------NRKVPCAYAYNTMI 342
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE---FFRKVQKS 121
+++ A+ +L++ K +G PS Y ++ + GK V E F ++++
Sbjct: 343 MGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCL---GKKRRVEEALRIFEEMKRD 399
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+PN Y +L++ L REGK + A+ +DMER G+ + + LC A K EEA
Sbjct: 400 AVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEAC 459
Query: 182 MQM----DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--PNLVTCNI 235
DK+C P V+++ LI G + +A ++ +M + C P +
Sbjct: 460 SIFEGMDDKVC----TPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLD-CGHVPGAIVYTS 514
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
+++++ + G E+ K+++EM PD+ NT +D +
Sbjct: 515 LIRSFFKCGRKEDGHKIYKEMVHTG------------CSPDLTLINTYMDCVFKAGETEK 562
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+++ + HG +A+ + +I +AG
Sbjct: 563 GRALFREINAHGFIPDARSYSILIHGLVKAG 593
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/355 (21%), Positives = 147/355 (41%), Gaps = 52/355 (14%)
Query: 23 IKELFDVIDSMRSLPKKKFK---------TGTLERW---DPRL-----------EPDIVV 59
++E FD+I +MR K KF+ G L DP L E ++ +
Sbjct: 176 LREAFDIIQTMR---KFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHL 232
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
+ ++ R + + A +L ++K Y + ++ GK ++ ++FF +++
Sbjct: 233 FTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMK 292
Query: 120 K-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+P+ + Y ++ L + + DEAV E +E+ V A Y + SAGK +
Sbjct: 293 SHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFD 352
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVK 238
EA +++ + P V++Y ++ ++ A IF +MK PN+ T NI++
Sbjct: 353 EAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILID 412
Query: 239 AYLEHGLFEEAMKLFQEMA------------------------EDSNHINREYDKKGLVI 274
G A+++ +M E++ I D K +
Sbjct: 413 MLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDK-VCT 471
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
P+ TF++++D R DD +Y++ML G A + +I + G+ E
Sbjct: 472 PNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKE 526
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 131/301 (43%), Gaps = 29/301 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V + S+ LG+ G + D SL +K G + P +VY +++
Sbjct: 472 PNAVTFSSLIDGLGKCGRV-------DDAYSLYEKMLDCGHV--------PGAIVYTSLI 516
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ + + E + +++ G P T M+ + G+ FR++ +I
Sbjct: 517 RSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFI 576
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+A +Y +L++ L + G +E M+ +G V Y + C +GK +A
Sbjct: 577 PDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQL 636
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
++++ + P VV+Y +I + A +F + K N N+V + ++ + +
Sbjct: 637 LEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGK 696
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +EA + +E+ + KGL P++YT+N +LDA + ++ + ++
Sbjct: 697 VGRIDEAYLIMEELMQ-----------KGLT-PNVYTWNCLLDALVKAEEINEALICFQS 744
Query: 303 M 303
M
Sbjct: 745 M 745
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/366 (18%), Positives = 150/366 (40%), Gaps = 34/366 (9%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---------------LPKKKFKTGTL 46
S P +AY I LG+ ++E + + M+ L ++ L
Sbjct: 365 GSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAAL 424
Query: 47 ERWD----PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
E D L P+++ N +++ + ++ E A + + + + P+A T+ +++ +
Sbjct: 425 EIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGL 484
Query: 103 LACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
CG+ + Y + K+ ++P A+ Y L+ + ++ G+ ++ ++M G
Sbjct: 485 GKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDL 544
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
L C+ AG+ E+ +I P SY+ LI + +G +F
Sbjct: 545 TLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYA 604
Query: 222 MK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
MK C + N ++ + + G +A +L +EM + P + T+
Sbjct: 605 MKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHP------------PTVVTY 652
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
+++D A R D+ ++++ +G+ N + +I + G+++ + E L +
Sbjct: 653 GSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQ 712
Query: 341 ADRITP 346
+TP
Sbjct: 713 KG-LTP 717
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 113/252 (44%), Gaps = 17/252 (6%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
DT AY ++ ++G + + + +++ M+ + P P +V Y +V++
Sbjct: 613 DTHAYNAVIDGFCKSGKVNKAYQLLEEMKV------------KGHP---PTVVTYGSVID 657
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIP 124
+ + + A+ + ++ K G K + Y +++ G+ + Y ++ QK P
Sbjct: 658 GLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP 717
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N + L++ L + + +EA+ + M+ + Y L LC K +A +
Sbjct: 718 NVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFW 777
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEH 243
++ K+ KP ++YT +I +GNI A+ +F++ K N P+ + N M++
Sbjct: 778 QEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSA 837
Query: 244 GLFEEAMKLFQE 255
+A LF+E
Sbjct: 838 NKAMDAYALFEE 849
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 58/273 (21%), Positives = 105/273 (38%), Gaps = 23/273 (8%)
Query: 81 QQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF----RKVQKSYIPNALAYKVLVNTL 136
L G+KP LV+ V+ N +F ++ +K + P A Y L+ +
Sbjct: 81 NSLSALGEKPLPE---LVIGVLKRLKDANTAVNYFQWAEKQTEKVHCPEA--YNSLLMVM 135
Query: 137 WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV 196
R + D +E+M G S+ + +L + K EA + + K +P
Sbjct: 136 ARNTEFDHLERILEEMSLSGFGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAF 195
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
+YT LI A + +F+QM+ N+ +++ + G + A+ L E
Sbjct: 196 SAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDE 255
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
M +S + DI +N +D + D + M HGL + +
Sbjct: 256 MKSNS------------LDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTY 303
Query: 316 LRMILDASRAGKVELLEITWEHLARADRITPPA 348
MI +A +++ +E L + +R P A
Sbjct: 304 TSMIGVLCKANRLDEAVELFEQLEQ-NRKVPCA 335
>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
Length = 702
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/359 (22%), Positives = 141/359 (39%), Gaps = 64/359 (17%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D A + LG+ G + D++D M P + D+ Y VL+
Sbjct: 52 DAAALEMVVRALGREGQHDVVCDLLDEMPLPPGSRL--------------DVRAYTTVLH 97
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV------------------------ 101
A R ++E A + +L++QG P+ TY +V++V
Sbjct: 98 ALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVE 157
Query: 102 ---------MLACGKYNLVYE---FFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSA 148
+ ACG+ L+ + FF ++ + ++P + Y L+ + G EA+
Sbjct: 158 PDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRV 217
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+++ME G A Y +LA AG EEA +D + P +Y ++ A +
Sbjct: 218 LKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYAN 277
Query: 209 SGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
G + A +F++M KN PN+ T N++ + F +++ +EM+
Sbjct: 278 VGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSG------- 330
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
P+ T+NTML C D + V M G+ + + +I R G
Sbjct: 331 -----CTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCG 384
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/305 (20%), Positives = 125/305 (40%), Gaps = 25/305 (8%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+EPD + V+ AC R + A + LK +G P TY +++V G Y
Sbjct: 156 VEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEAL 215
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++++ S P+A+ Y L T R G +EA ++ M +G++ + Y +
Sbjct: 216 RVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAY 275
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
+ G+ +EAL D++ K P V +Y + + +M ++ C+PN
Sbjct: 276 ANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNR 335
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE---------------------YDK 269
VT N M+ + G+ + ++ M ++R+ YD+
Sbjct: 336 VTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDE 395
Query: 270 --KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
P + T+N +L+ + + W + + +ML +G N + + ++ ++ G
Sbjct: 396 MISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGN 455
Query: 328 VELLE 332
+E
Sbjct: 456 AAGIE 460
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 126/322 (39%), Gaps = 36/322 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS----------------LPKKKFKTGTLER 48
P+T Y ++ G + E + D M+ L KK T LE
Sbjct: 263 PNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEM 322
Query: 49 WD----PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ P+ V +N +L C +R + VL +K G + S TY ++
Sbjct: 323 LEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGR 382
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
CG ++ + + + + P Y L+N L R+G A S V M + G +
Sbjct: 383 CGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQS 442
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANK-PLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y L +C G + ++K V P V L+ A ++ F ++
Sbjct: 443 YSLLLQCYAKGGNA-AGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEV 501
Query: 223 K-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
K P+LV N M+ Y ++GL+ +A ++F + K+ + PD+ T+N
Sbjct: 502 KAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSI------------KQSGLSPDLITYN 549
Query: 282 TMLDACAAEKRWDDLELVYKRM 303
+++D A + E + K++
Sbjct: 550 SLMDMYAKSNESWEAEKILKQL 571
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 114/256 (44%), Gaps = 14/256 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P + YNA+LN R+ W A ++ ++ + G KP+ +Y L+++ G +
Sbjct: 403 PCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESI 462
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++V I P+ + + LV ++ + + A ++++ +G ++ +
Sbjct: 463 EKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAK 522
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
G +A D I + P +++Y L+ S A I Q+K+ P++V+
Sbjct: 523 NGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVS 582
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ + + GL +EA ++ EM D + P + T++T++ A+ +
Sbjct: 583 YNTVINGFCKQGLIKEAQRILSEMIADG------------MAPCVVTYHTLVGGYASLEM 630
Query: 293 WDDLELVYKRMLHHGL 308
+++ V M+HH L
Sbjct: 631 FNEAREVVNYMIHHNL 646
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 98/242 (40%), Gaps = 17/242 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y +A T +AG +E +D+M S L P+ YN V+
Sbjct: 228 PDAVTYNELAGTYARAGFFEEAAKCLDTMTS---------------KGLLPNTFTYNTVM 272
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-I 123
A + + A + ++K+ G P+ TY L+ ++ ++ + E ++ +S
Sbjct: 273 TAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCT 332
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + ++ + G D + M+ G+ S Y L G A
Sbjct: 333 PNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKM 392
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
D++ P + +Y L+ G+ A I ++M KN PN + +++++ Y +
Sbjct: 393 YDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAK 452
Query: 243 HG 244
G
Sbjct: 453 GG 454
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD+V++N++L + + A + +KQ G P TY +M++ + +
Sbjct: 507 KPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEK 566
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++++ S + P+ ++Y ++N ++G EA + +M G+ Y+ L
Sbjct: 567 ILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYA 626
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
S EA ++ + KP+ ++Y ++ +
Sbjct: 627 SLEMFNEAREVVNYMIHHNLKPMELTYRRVVDS 659
>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
Length = 588
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 117/259 (45%), Gaps = 23/259 (8%)
Query: 5 PDTVAYRSIA---VTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
P+ Y S+ +G KELF S+P K + EPD++ YN
Sbjct: 305 PNLFTYTSLIKGFCLVGDLNSAKELF------VSMPSKGY------------EPDVISYN 346
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
++N + + E A + ++ G P T G++++ + GK + E FR ++
Sbjct: 347 MLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPY 406
Query: 122 YIPNALAY-KVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+P L + ++ L + G EA+ ++E + + L LC AGK E A
Sbjct: 407 AMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETA 466
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
+K+ + +P ++Y+ +I G + A +F +M +N CSP+L+T +I+++
Sbjct: 467 WELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRG 526
Query: 240 YLEHGLFEEAMKLFQEMAE 258
+ E E+ ++L M E
Sbjct: 527 FYESNKLEKVVQLLHRMIE 545
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 138/313 (44%), Gaps = 21/313 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+++ Y+ +++ + WE A + ++ QG +P+ T+ ++++++ G+ +
Sbjct: 235 PNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKL 294
Query: 115 FR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+Q +PN Y L+ G + A M +G Y L C
Sbjct: 295 LEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCK 354
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NLVT 232
K EEA+ +++ V P V + L++A +G + +A +F +K + P +L
Sbjct: 355 TLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCI 414
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEK 291
C I + ++G EAMKLF E+ Y+ K DI TF ++D C A K
Sbjct: 415 CCIFLDGLCKNGYIFEAMKLFNEL--------ESYNMK----LDIETFGCLIDGLCKAGK 462
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL----ARADRITPP 347
EL ++++ G+ +A + MI + G+V+ I ++ + D IT
Sbjct: 463 LETAWEL-FEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYS 521
Query: 348 ALIKERF-CNRLE 359
L++ + N+LE
Sbjct: 522 ILMRGFYESNKLE 534
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 128/257 (49%), Gaps = 24/257 (9%)
Query: 55 PDIVVYNAVLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
PD+V + ++ CV + E A + ++++ G P+ TYG +++ + A G N+ +
Sbjct: 159 PDVVTFTTLIKGLCVEHRIIE-ATKLFMRMQKLGCTPNVVTYGTLIKGLCALGNINIALK 217
Query: 114 FFRKV---QKSYI----PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
+ +++ Y+ PN ++Y ++++ L + G +EA+ +M +G+ + +
Sbjct: 218 WHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSV 277
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KN 224
L LC G+ +A ++ + ++ P + +YT LI+ G++ +A +F M K
Sbjct: 278 LIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKG 337
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
+ P++++ N+++ Y + EEAMKLF EM H+ + PD+ T +L
Sbjct: 338 Y-EPDVISYNMLINGYCKTLKVEEAMKLFNEML----HVG--------MWPDVKTSGVLL 384
Query: 285 DACAAEKRWDDLELVYK 301
A + DD + +++
Sbjct: 385 KALFLAGKVDDAKELFR 401
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 103/225 (45%), Gaps = 30/225 (13%)
Query: 108 YNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
Y+ V+ ++++ + + P+ L +L+N L + +E ++A+ + RRG + +
Sbjct: 107 YSQVFSLYKQMHLAGLWPDLLTLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTT 166
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA----------- 215
L + LC + EA ++ K+ P VV+Y LI+ GNI A
Sbjct: 167 LIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDT 226
Query: 216 -AYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI 274
Y+FN C PN+++ +I++ + G +EEA+ LF EM + V
Sbjct: 227 SPYVFN-----CRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQG------------VQ 269
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
P++ TF+ ++D E + + + + M+ G+ N + +I
Sbjct: 270 PNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLI 314
>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
Length = 684
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/377 (20%), Positives = 158/377 (41%), Gaps = 33/377 (8%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSM----------------RSLPKKKFKTG 44
M D + + + L GH++E ++D M R L + +
Sbjct: 244 MGCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADE 303
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E ++V+ N V+ C+ + A + + + +G P TY ++M +
Sbjct: 304 AYAMLGRVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCK 363
Query: 105 CGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ +++ K PN + Y L+++ R G D+A + ++ M +G ++
Sbjct: 364 LGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQG 423
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQM 222
Y + L GK +EA+ + ++ KP + +Y +I ++ + A +IF N +
Sbjct: 424 YNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLL 483
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ N +T N ++ A L G ++E ++L EM + D+ ++N
Sbjct: 484 EEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPL------------DVVSYNG 531
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARA 341
++ A E D ++ + M+ G+ N + +I + +AGKV + LE++ E L +
Sbjct: 532 LIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQG 591
Query: 342 DRITPPALIKERFCNRL 358
+TP + N L
Sbjct: 592 --LTPDIVTYNTLINGL 606
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/310 (21%), Positives = 125/310 (40%), Gaps = 45/310 (14%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P YNAVL+ R A + +++ + P+ T+G+ + G+
Sbjct: 141 VTPSFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRARDAL 200
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
R + + +P+A+ Y+ +++ L +G EA + +++M G + D+ L
Sbjct: 201 ALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGL 260
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGL----------------------------- 202
C G EA +D++ P VV+Y L
Sbjct: 261 CGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEVNVVMLN 320
Query: 203 --IQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
I+ CL G + A ++ M + C P++ T NI++ + G A+++ EM E
Sbjct: 321 TVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEE- 379
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
KG P+I T++T+L + WDD + +M G N++ + +I
Sbjct: 380 ----------KGCA-PNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGII 428
Query: 320 LDASRAGKVE 329
+ GK++
Sbjct: 429 YALGKDGKLD 438
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 114/256 (44%), Gaps = 14/256 (5%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV- 118
YN ++ A + + + A ++Q++K QG KP TY ++ + + + F +
Sbjct: 424 YNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLL 483
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
++ + N + Y L++ L G+ E + +M G Y L + LC G +
Sbjct: 484 EEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVD 543
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMV 237
++M ++++ KP SY LI +G +++A + +M N +P++VT N ++
Sbjct: 544 RSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLI 603
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ G A+ L +++ ++ H PDI T+N ++ + DD
Sbjct: 604 NGLCKVGWTHAALNLLEKLPNENVH------------PDIVTYNILISWHCKVRLLDDAS 651
Query: 298 LVYKRMLHHGLHFNAK 313
++ + + G+ N +
Sbjct: 652 MLLDKAVSGGIVPNER 667
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 107/252 (42%), Gaps = 17/252 (6%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
++ Y I LG+ G + E ++ M+S K PDI YN ++
Sbjct: 420 NSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCK---------------PDICTYNTIIY 464
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP- 124
Q + A + L ++G + TY ++ +L G++ ++ P
Sbjct: 465 HLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPL 524
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ ++Y L+ L +EG D ++ +E+M +GI + Y L LC AGK +AL
Sbjct: 525 DVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELS 584
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEH 243
++ P +V+Y LI G A + ++ N P++VT NI++ + +
Sbjct: 585 KEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKV 644
Query: 244 GLFEEAMKLFQE 255
L ++A L +
Sbjct: 645 RLLDDASMLLDK 656
>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 140/316 (44%), Gaps = 29/316 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y I +G++ I+++ + + M + K +K+ V YN ++
Sbjct: 799 PDEFTYHLILDAMGKSMRIEDMLKIQEEMHN---KGYKS------------TYVTYNTII 843
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ V+ K + A + QL +G P+ TYG +++ +L G F ++ +
Sbjct: 844 SGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCE 903
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y +L+N G T++ E M +G+ Y + LC+ G+ + L
Sbjct: 904 PNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSY 963
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + +P +++Y LI SG ++ A ++N M K +PNL T N ++ +
Sbjct: 964 FKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGK 1023
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G EA K+++E+ KG P+++T+N ++ + ++ Y R
Sbjct: 1024 AGKAAEAGKMYEELL-----------AKGWK-PNVFTYNALIRGYSVSGSPENAFAAYGR 1071
Query: 303 MLHHGLHFNAKRHLRM 318
M+ G N+ ++++
Sbjct: 1072 MIVGGCRPNSSTYMQL 1087
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 127/282 (45%), Gaps = 22/282 (7%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKY 108
+PD Y+ +L+A + + E + +++ +G K + TY GLV ML
Sbjct: 798 DPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLD-EAI 856
Query: 109 NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
NL Y+ + + + P Y L++ L ++G ++A + ++M G + A+Y L
Sbjct: 857 NLYYQL---MSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILL 913
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CS 227
AG E+ + + + P + SYT +I G + + F Q+ +
Sbjct: 914 NGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLE 973
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P+L+T N+++ + G EEA+ L+ +M +KKG + P++YT+N+++
Sbjct: 974 PDLITYNLLIHGLGKSGRLEEALSLYNDM-----------EKKG-IAPNLYTYNSLILYL 1021
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + +Y+ +L G N + +I S +G E
Sbjct: 1022 GKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPE 1063
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 39/295 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ G +G + + ++ +++++ ++V Y A +
Sbjct: 309 PDRVTYITLLDKCGDSGDSRSVSEIWNALKA---------------DGYNDNVVSYTAAV 353
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+A + + + A V ++KQ+G P +Y ++ L ++N E F +
Sbjct: 354 DALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPT 413
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV-----GSAALYYDLARCLCSAGKCE 178
PN + + +N + G++ +A+ E M+ +GIV G+A LY L G+
Sbjct: 414 PNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLY-----GLAKTGRLG 468
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMV 237
A ++ + P ++YT +I+ C + N A IF +M +N C+P+++ N ++
Sbjct: 469 MAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLI 528
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+ G EA K+F E+ E +N E P T+NT+L E +
Sbjct: 529 DMLYKAGRGNEAWKIFYELKE----MNLE--------PTDCTYNTLLAGLGREGK 571
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 127/293 (43%), Gaps = 21/293 (7%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY----NLVYEF 114
YN ++ V+ A V + + G P+ TY ++M LA GK +V
Sbjct: 173 TYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLM---LAFGKRRDAETVVGLL 229
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ PN +Y + + L + G+ +EA + ME G L + LC A
Sbjct: 230 GEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDA 289
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTC 233
G+ +A K+ KP V+Y L+ C DSG+ ++ + I+N +K + + N+V+
Sbjct: 290 GRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSY 349
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
V A + G +EA+ +F EM + KG +IP Y++N+++ R+
Sbjct: 350 TAAVDALCQVGRVDEALDVFDEMKQ-----------KG-IIPQQYSYNSLISGFLKADRF 397
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
+ ++ M HG N H+ I ++G+ L + L ++ I P
Sbjct: 398 NRALELFNHMNIHGPTPNGYTHVLFINYHGKSGE-SLKALKRYELMKSKGIVP 449
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/252 (19%), Positives = 106/252 (42%), Gaps = 16/252 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD VA ++ L + G + V ++++ + PD + Y ++
Sbjct: 449 PDVVAGNAVLYGLAKTGRLGMAKRVFHELKAM---------------GISPDNITYTMMI 493
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
C + + A + ++ + P +++++ G+ N ++ F ++++ +
Sbjct: 494 KCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLE 553
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P Y L+ L REGK E + +E M + Y + CLC G+ AL
Sbjct: 554 PTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDM 613
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
+ + P + SY ++ + G + A ++F QMK +P+ T ++ +++
Sbjct: 614 LYSMTMNGCMPDLSSYNTVMYGLVKEGRLDEAFWMFCQMKKVLAPDYATVCTILPSFVRS 673
Query: 244 GLFEEAMKLFQE 255
GL +EA+ +E
Sbjct: 674 GLMKEALHTVRE 685
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/281 (19%), Positives = 125/281 (44%), Gaps = 24/281 (8%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNL 110
D + + ++ + K+ A ++++ + G +Y GLV E ++ ++
Sbjct: 730 DDLFLSPIIRHFCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLI-----DI 784
Query: 111 VYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
E F ++++ P+ Y ++++ + + + ++ + E+M +G + Y +
Sbjct: 785 AEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIIS 844
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSP 228
L + +EA+ ++ P +Y L+ L GNI++A +F++M + C P
Sbjct: 845 GLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEP 904
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
N NI++ Y G E+ +LF+ M E + PDI ++ ++D
Sbjct: 905 NCAIYNILLNGYRIAGDTEKVCELFESMVEQGMN------------PDIKSYTVVIDTLC 952
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
A+ R +D +K++ GL + + +I ++G++E
Sbjct: 953 ADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLE 993
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 104/235 (44%), Gaps = 21/235 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE- 113
PD+V NAVL + + A V +LK G P TY ++++ C K + E
Sbjct: 449 PDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIK---CCSKASNADEA 505
Query: 114 ---FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
F ++ P+ LA L++ L++ G+ +EA +++ + + Y L
Sbjct: 506 MKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAG 565
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA-YIFNQMKNFCSPN 229
L GK +E + ++ + + P +++Y ++ +G + A +++ N C P+
Sbjct: 566 LGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPD 625
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
L + N ++ ++ G +EA +F +M K ++ PD T T+L
Sbjct: 626 LSSYNTVMYGLVKEGRLDEAFWMFCQM-------------KKVLAPDYATVCTIL 667
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/348 (20%), Positives = 137/348 (39%), Gaps = 70/348 (20%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M+ P Y ++ LG+ G +KE+ +++ M S P+I+ Y
Sbjct: 550 MNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNS---------------NSFPPNIITY 594
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N VL+ + + A +L + G P ++Y VM ++ G+ + + F +++K
Sbjct: 595 NTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEGRLDEAFWMFCQMKK 654
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVED---------------------MERRGI-- 157
P+ ++ + R G EA+ V + ++R G
Sbjct: 655 VLAPDYATVCTILPSFVRSGLMKEALHTVREYILQPDSKVDRSSVHSLMEGILKRDGTEK 714
Query: 158 -------VGSAALYYD------LARCLCSAGKCEEALMQMDKICKVANKPLVV---SYTG 201
+ S+ L D + R C K +EAL + + K N + + SY
Sbjct: 715 SIEFAENIASSGLLLDDLFLSPIIRHFC---KHKEALAAHELVKKFENLGVSLKTGSYNA 771
Query: 202 LIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
LI +D I A +F++MK C P+ T ++++ A + E+ +K+ +EM
Sbjct: 772 LICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMH--- 828
Query: 261 NHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
N+ Y T+NT++ K D+ +Y +++ G
Sbjct: 829 ---NKGYKST------YVTYNTIISGLVKSKMLDEAINLYYQLMSEGF 867
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/311 (20%), Positives = 130/311 (41%), Gaps = 18/311 (5%)
Query: 43 TGTLERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
G L + R + P++ Y + + + E A+ +L++++++G KP T +++++
Sbjct: 226 VGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQI 285
Query: 102 MLACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ G+ + F K++ S P+ + Y L++ G + ++ G +
Sbjct: 286 LCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDN 345
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y LC G+ +EAL D++ + P SY LI L + A +FN
Sbjct: 346 VVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFN 405
Query: 221 QMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
M + +PN T + + + + G +A+K ++ M K ++PD+
Sbjct: 406 HMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELM------------KSKGIVPDVVA 453
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHL 338
N +L A R + V+ + G+ + + MI S+A E ++I E +
Sbjct: 454 GNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMI 513
Query: 339 ARADRITPPAL 349
+R P L
Sbjct: 514 --ENRCAPDVL 522
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 104/269 (38%), Gaps = 49/269 (18%)
Query: 98 VMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
++E+M A G+ V + F +Q+ I N + + + EG A A+ M+ G
Sbjct: 107 MLELMRAHGRVGDVAQVFDLMQRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAG 166
Query: 157 IVGSAALYYDLARCLCSAGKCEEAL-----MQMDKICKVAN------------------- 192
IV +A Y L L +G EA+ M D +
Sbjct: 167 IVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVV 226
Query: 193 -----------KPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
+P V SYT I+ +G ++ A I +M + C P++VT ++++
Sbjct: 227 GLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQIL 286
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ G +A +F +M + D+K PD T+ T+LD C + ++
Sbjct: 287 CDAGRLADAKDVFWKM--------KASDQK----PDRVTYITLLDKCGDSGDSRSVSEIW 334
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ G + N + + + G+V+
Sbjct: 335 NALKADGYNDNVVSYTAAVDALCQVGRVD 363
>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/334 (21%), Positives = 144/334 (43%), Gaps = 42/334 (12%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD V Y ++ + G ++E F+++DSM L+P + YNA+
Sbjct: 129 FPDVVTYNTLINAYCRQGLLEEAFELMDSMSG---------------KGLKPCVFTYNAI 173
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE---FFRKVQK 120
+N + ++ A VL ++ + G P TY +++ + C N++ F +
Sbjct: 174 INGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL--VECCRNDNMMDAERIFDEMPSQ 231
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+P+ +++ L+ L + G D+A+ DM+ G+ +Y L C G EA
Sbjct: 232 GVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEA 291
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
L D++ + VV+Y ++ + A +F +M + P+ T ++
Sbjct: 292 LKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLING 351
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKR------ 292
Y + G +A+ LF+ M + + + PD+ T+NT++D C +
Sbjct: 352 YSKDGNMNKAVTLFEMMIQRN------------LKPDVVTYNTLIDGFCKGSEMEKVNEL 399
Query: 293 WDDL--ELVYKRMLHHGLHFNAKRHLRMILDASR 324
W+D+ +Y + +G+ N ++ + +A R
Sbjct: 400 WNDMISRRIYPNHISYGILINGYCNMGCVSEAFR 433
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 132/310 (42%), Gaps = 23/310 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY---NLV 111
PD+V YN ++NA R+ E AF ++ + +G KP TY ++ + GKY V
Sbjct: 130 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 189
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ K+ S P+ Y +L+ R +A ++M +G+V + L L
Sbjct: 190 LDEMLKIGMS--PDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLL 247
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
G ++AL + P V YT LI +G + A + ++M + C ++
Sbjct: 248 SKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDV 307
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N ++ + + EA +LF EM E V PD YTF T+++ + +
Sbjct: 308 VTYNTILNGLCKEKMLSEADELFTEMTERG------------VFPDFYTFTTLINGYSKD 355
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPP--- 347
+ +++ M+ L + + +I + ++E + W + + RI P
Sbjct: 356 GNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMI-SRRIYPNHIS 414
Query: 348 -ALIKERFCN 356
++ +CN
Sbjct: 415 YGILINGYCN 424
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/325 (21%), Positives = 142/325 (43%), Gaps = 32/325 (9%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ- 119
N++L V+ + A+ + Q++ + G + + T +++ + K F ++
Sbjct: 66 NSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEE 125
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K P+ + Y L+N R+G +EA ++ M +G+ Y + LC GK
Sbjct: 126 KGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLR 185
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A +D++ K+ P +Y L+ C + N+ +A IF++M P+LV+ + ++
Sbjct: 186 AKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIG 245
Query: 239 AYLEHGLFEEAMKLFQEMAE------------------------DSNHINREYDKKGLVI 274
++G ++A+K F++M ++ + E ++G V+
Sbjct: 246 LLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVL 305
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VEL 330
D+ T+NT+L+ EK + + ++ M G+ + +I S+ G V L
Sbjct: 306 -DVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTL 364
Query: 331 LEITWEHLARADRITPPALIKERFC 355
E+ + + D +T LI + FC
Sbjct: 365 FEMMIQRNLKPDVVTYNTLI-DGFC 388
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/219 (19%), Positives = 90/219 (41%), Gaps = 16/219 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ + ++++ ++ + M S R+ P+ + Y ++
Sbjct: 375 PDVVTYNTLIDGFCKGSEMEKVNELWNDMIS---------------RRIYPNHISYGILI 419
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N AF + ++ ++G + + T +++ G EF + K +
Sbjct: 420 NGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIV 479
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L+N +E D A + V ME G++ Y + G+ +EA +
Sbjct: 480 PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 539
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
M K+ + P +YT LI + N++ A + ++M
Sbjct: 540 MLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEM 578
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 70/176 (39%), Gaps = 21/176 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDP 51
YP+ ++Y + G + E F + D M ++ K + G + D
Sbjct: 409 YPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADE 468
Query: 52 RLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
L PD + YN ++N ++ + + AF ++ +++ G P TY +++
Sbjct: 469 FLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFS 528
Query: 104 ACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
G+ K +++ P+ Y L+N + EA ++M +RG V
Sbjct: 529 RQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFV 584
>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 817
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 134/296 (45%), Gaps = 16/296 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P + YN +++ + ++ F +L+Q+++ G KP+ +YG ++ + GK
Sbjct: 454 PSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIV 513
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
R + + +PNA Y +L++ GK +A+ ++M R I + Y L LC
Sbjct: 514 LRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCK 573
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
GK EA + +I + P V++Y LI ++GN+ ++ MKN P + T
Sbjct: 574 KGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRT 633
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+ ++ + G+ E KL+ EM + + ++PD +N M+ A
Sbjct: 634 YHPLISGCSKEGI-ELVEKLYNEMLQMN------------LLPDRVVYNAMIHCYAEIGN 680
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPA 348
+++ ML G+H + + +IL R GK+ ++ ++ +A + P A
Sbjct: 681 TQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNM-KAKELAPKA 735
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/294 (19%), Positives = 139/294 (47%), Gaps = 15/294 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+I+ +N++L+ + ++ + A +L++++ G P TY ++ + +L C N E
Sbjct: 279 PNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMEL 338
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ + +K N +L+N L ++GK ++A ++ G+V +Y C
Sbjct: 339 YEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCR 398
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G +A++ ++++ +P +++ LI D + A +M + +P++ T
Sbjct: 399 IGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVET 458
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ Y + F+ ++ ++M E V P++ ++ ++++ + +
Sbjct: 459 YNTLIDGYGKLCTFDRCFQILEQMEEIG------------VKPNVVSYGSLINCLCKDGK 506
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
+ E+V + M+ G+ NA+ + +I + GKV+ ++ + R++ I+P
Sbjct: 507 ILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSE-ISP 559
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/298 (20%), Positives = 123/298 (41%), Gaps = 19/298 (6%)
Query: 68 VRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNA 126
V KQ+ + +++ G + Y ++ + + EF ++K + PN
Sbjct: 152 VNEKQFVKVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNV 211
Query: 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK 186
Y VL+ L RE + +A ++M +VGS Y L C G+ + A ++
Sbjct: 212 FIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRER 271
Query: 187 ICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGL 245
+ + + P ++++ L+ ++ A + +M+ N P+ T +I+ L
Sbjct: 272 MKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDD 331
Query: 246 FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
AM+L+++ E IN YT + +L+ + + + E + K+
Sbjct: 332 GNGAMELYEQATEKGIRINN------------YTGSILLNGLCKQGKVEKAEEILKKFTE 379
Query: 306 HGLHFNAKRHLRMILDASRAGKVELLEITWEHLA----RADRITPPALIKERFCNRLE 359
+GL + + + R G + +T E + R + IT +LI ++FC+ E
Sbjct: 380 NGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLI-DKFCDMKE 436
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 75/370 (20%), Positives = 144/370 (38%), Gaps = 64/370 (17%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
DT Y + ++K + +DSMR K G + P++ +YN ++
Sbjct: 175 DTFMYAKAIQAAVKLQNLKMGMEFLDSMR-------KRG--------VRPNVFIYNVLIG 219
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIP 124
R K+ A + ++ S TY +++ G+ + ++ ++ +KS P
Sbjct: 220 GLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAP 279
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS----AALYYDLARC---------- 170
N + + L++ L + K EA S +++ME G + + L+ L RC
Sbjct: 280 NIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELY 339
Query: 171 ---------------------LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS 209
LC GK E+A + K + V Y +
Sbjct: 340 EQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRI 399
Query: 210 GNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD 268
G++ A +M++F PN +T N ++ + + ++A + ++MAE
Sbjct: 400 GDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAE---------- 449
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
KG V P + T+NT++D +D + ++M G+ N + +I + GK+
Sbjct: 450 -KG-VTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKI 507
Query: 329 ELLEITWEHL 338
EI +
Sbjct: 508 LEAEIVLRDM 517
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/281 (18%), Positives = 107/281 (38%), Gaps = 25/281 (8%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + P +V YN +++ ++ + A L Q+ G P TY ++ G
Sbjct: 551 EMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAG 610
Query: 107 KYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVE----DMERRGIVGSA 161
+ + ++ I P Y L++ +EG + VE +M + ++
Sbjct: 611 NVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEG-----IELVEKLYNEMLQMNLLPDR 665
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
+Y + C G ++A + P ++Y LI G + N + N
Sbjct: 666 VVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNN 725
Query: 222 MK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
MK +P T +I+VK + + F A ++EM E++ +P+
Sbjct: 726 MKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMVENN------------FLPNASIC 773
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGL--HFNAKRHLRMI 319
N + E R +++++ M G+ H+ +K + +
Sbjct: 774 NELTAGLEQEGRLQEVQVICSEMNVKGIINHWPSKEEISAV 814
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 28/153 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDP------------- 51
PD + Y S+ AG++ + + ++M++L K T+ + P
Sbjct: 594 PDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKP----TVRTYHPLISGCSKEGIELV 649
Query: 52 ----------RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
L PD VVYNA+++ + A+ + Q + QG P TY ++
Sbjct: 650 EKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILG 709
Query: 102 MLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLV 133
GK + + + ++ K P A Y +LV
Sbjct: 710 HFREGKLSNIKDLVNNMKAKELAPKADTYDILV 742
>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
Length = 1088
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/354 (21%), Positives = 145/354 (40%), Gaps = 46/354 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM---RSLPKKKFKTGTLERWDPRLEPDIVVYN 61
P+TV Y ++ L +G + E FD+I M LP TG P I + +
Sbjct: 453 PNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTG----------PIIALCD 502
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
C +E A+ + +K +G +P+ TY ++ + G + F ++ +
Sbjct: 503 M---GC-----YEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRD 554
Query: 122 YI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ PN + Y L+N L + A + M R G+ + Y ++ + C G ++A
Sbjct: 555 GVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKA 614
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKA 239
++ M+ + + + +V+Y +I+ DSGN +A I + M++ C P+ + ++
Sbjct: 615 MLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICG 674
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINR-----------------------EYDKKGLVIPD 276
+ + E A LF EM +D N E+ K+ P+
Sbjct: 675 FCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 734
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ T+N ++ + + E + K M+ G+ N + MI + G L
Sbjct: 735 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSL 788
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 123/311 (39%), Gaps = 57/311 (18%)
Query: 17 LGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRL----EPDIVVYNAVLNACVRRKQ 72
L Q+G LF + L + ++R+ L +P++++YNAV+NA +
Sbjct: 341 LSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGN 400
Query: 73 WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL--VYEFFRKVQKSYI-PNALAY 129
A +++++ + P TY ++ C K++L + F ++ K PN + Y
Sbjct: 401 VADAETIMKKVFESEMSPDTFTY--TSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTY 458
Query: 130 KVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK 189
L+N L G+ +EA + +M GI+
Sbjct: 459 STLINGLCDSGRVNEAFDLIREMILHGIL------------------------------- 487
Query: 190 VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEE 248
P + TG I A D G ++A +F MKN C PN+ T ++ GL +
Sbjct: 488 ----PTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKV 543
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
A+ LF M+ D V P+ T+N +++ +R +V M +GL
Sbjct: 544 AIGLFHRMSRDG------------VFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGL 591
Query: 309 HFNAKRHLRMI 319
N + MI
Sbjct: 592 FTNIVTYNEMI 602
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 74/362 (20%), Positives = 144/362 (39%), Gaps = 40/362 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y ++ L + G++ + ++ KK F++ + PD Y +++
Sbjct: 383 PNLLIYNAVINALCKDGNVAD-------AETIMKKVFES--------EMSPDTFTYTSMI 427
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
R+ + A V Q+ ++G +P+ TY ++ + G+ N ++ R+ + +
Sbjct: 428 LGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGIL 487
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P A + L G ++A DM+ +G + Y L LC +G + A+
Sbjct: 488 PTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGL 547
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + P V+Y LI +++ I+ A + N M +N N+VT N M+K Y
Sbjct: 548 FHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCI 607
Query: 243 HGLFEEAMKLFQEMAEDS--------NHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
G ++AM + M + N I + Y G + + M D W
Sbjct: 608 LGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 667
Query: 295 DLELV---------------YKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
EL+ + M+ GL N + +I + K++ EH+
Sbjct: 668 YTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMK 727
Query: 340 RA 341
R+
Sbjct: 728 RS 729
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 78/152 (51%), Gaps = 1/152 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++ YN +++ ++ + GA + + + ++G P+ TY +++ + G +L E
Sbjct: 733 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 792
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F K +++ +PN L Y L+ L +EGK +EA + ++ER G++ Y +
Sbjct: 793 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 852
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+GK E A + ++ K +P + +Y LI+
Sbjct: 853 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKG 884
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 125/302 (41%), Gaps = 29/302 (9%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG---KYNLV 111
P+ V YNA++N V ++ + AF VL + + G + TY +++ G K LV
Sbjct: 558 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLV 617
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+Q+ + N + Y ++ G T A+ ++ M G Y +L
Sbjct: 618 MN--NMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 675
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C K E A +++ P V+YT LI + A + MK + C PN+
Sbjct: 676 CKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNV 735
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDS---NHINREYDKKGLV-------------- 273
T N+++ + F A +L + M E+ N + GL
Sbjct: 736 QTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNK 795
Query: 274 ------IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
+P++ T+++++ A E + ++ E ++ + HGL + +++MI +GK
Sbjct: 796 MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGK 855
Query: 328 VE 329
VE
Sbjct: 856 VE 857
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 103/253 (40%), Gaps = 17/253 (6%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+ V Y +I +G+ ++D MR D +PD Y ++
Sbjct: 629 NLVTYNTIIKGYCDSGNTTSALRILDLMR---------------DGGCKPDEWSYTELIC 673
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ + E AF + ++ G P+ TY +++ K + +++S P
Sbjct: 674 GFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRP 733
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N Y VL++ L ++ A + M GI + Y + LC G AL
Sbjct: 734 NVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMF 793
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
+K+ + P +++Y+ LI+A G ++ A +F ++ ++ P+ +T M++AY+
Sbjct: 794 NKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMS 853
Query: 244 GLFEEAMKLFQEM 256
G E A M
Sbjct: 854 GKVEHAFNFLGRM 866
>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
Length = 701
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/346 (21%), Positives = 142/346 (41%), Gaps = 29/346 (8%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S YP Y + L + G + E ++ + M+ K PD+ ++
Sbjct: 250 SVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEK---------------SPDLFTFS 294
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
++++ + + A V Q++ + G P TY ++ + GK N +E + + K+
Sbjct: 295 SMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKN 354
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
N ++Y +L+ L K ++A+ + + RG+ + Y L LC G +AL
Sbjct: 355 NCCNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKAL 414
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
+++ +Y+ ++ G ++ A + +QM KN N N ++ Y
Sbjct: 415 RILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGY 474
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ EEA+ + +EM K P + ++NT+++ +R+ D L
Sbjct: 475 VRAFKLEEAISVLREM------------KSKDCAPTVVSYNTIINGLCKAERFSDAYLSL 522
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
K ML GL + + +I R KV++ W H R+ P
Sbjct: 523 KEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLW-HQCINKRLKP 567
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 121/295 (41%), Gaps = 62/295 (21%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC-------GK 107
P I +N++LNA + QW A + G P+ TY +++++ +C GK
Sbjct: 112 PGIRSFNSMLNAFIESNQWREAELFFTYFQTAGMSPNLQTYNILIKI--SCKKRQFEKGK 169
Query: 108 YNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
L + F + P+ L+Y L+N L + G +AV ++M RG+
Sbjct: 170 GLLTWMF----ENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGV---------- 215
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227
P V+ Y LI L G+ A I+ ++ S
Sbjct: 216 -------------------------NPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESS 250
Query: 228 --PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
P++ T NIM+ + G +E+M+++ M KK PD++TF++M+
Sbjct: 251 VYPSVETYNIMINGLCKLGKLDESMEMWNRM------------KKNEKSPDLFTFSSMIH 298
Query: 286 ACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
+ ++ E V++ M+ GL + + + M+ R GK+ W +++
Sbjct: 299 GLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSK 353
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 114/259 (44%), Gaps = 22/259 (8%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLERWDPRL 53
DT AY S+ L + G +++ ++I M+ SL + LE L
Sbjct: 428 DTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVL 487
Query: 54 E--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
P +V YN ++N + +++ A+ L+++ ++G KP TY L+++ +
Sbjct: 488 REMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRG 547
Query: 106 GKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
K ++ + + + K P+ + ++++ L K D A+ M + V +
Sbjct: 548 EKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTH 607
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMK 223
+ L AG C EAL D+I + +P ++SY + + +A ++++ +
Sbjct: 608 NTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIEFLYDALD 667
Query: 224 NFCSPNLVTCNIMVKAYLE 242
PN T N++V+A ++
Sbjct: 668 RGILPNAPTWNVLVRAVVD 686
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 100/214 (46%), Gaps = 9/214 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P++ YN ++ +++Q+E +L + + G P +YG ++ + G
Sbjct: 145 MSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAV 204
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER----RGIVGSAALYYDL 167
E F ++ + P+ + Y +L++ R+G + V A E +R + S Y +
Sbjct: 205 ELFDEMSVRGVNPDVMCYNILIDGFLRKG---DFVKANEIWKRLLTESSVYPSVETYNIM 261
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
LC GK +E++ +++ K P + +++ +I +GN A +F +M ++
Sbjct: 262 INGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGL 321
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
SP++ T N M+ G + +L+ M++++
Sbjct: 322 SPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNN 355
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 106/230 (46%), Gaps = 7/230 (3%)
Query: 35 SLPKKKFKTGT-LERW--DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPS 91
S K++F+ G L W + L PDI+ Y ++NA + A + ++ +G P
Sbjct: 159 SCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPD 218
Query: 92 ATTYGLVMEVMLACGKYNLVYEFFRKV--QKSYIPNALAYKVLVNTLWREGKTDEAVSAV 149
Y ++++ L G + E ++++ + S P+ Y +++N L + GK DE++
Sbjct: 219 VMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMW 278
Query: 150 EDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS 209
M++ + + L AG A ++ + P V +Y ++ +
Sbjct: 279 NRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRT 338
Query: 210 GNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
G + ++N M KN C N+V+ N++++ L++ E+A+ +Q + E
Sbjct: 339 GKLNKCFELWNVMSKNNCC-NIVSYNMLIQGLLDNKKVEQAICYWQLLHE 387
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 115/260 (44%), Gaps = 16/260 (6%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D Y+++++ ++ E A ++ Q+K+ +K ++ + ++ + K
Sbjct: 428 DTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVL 487
Query: 116 RKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
R+++ K P ++Y ++N L + + +A ++++M G+ Y L LC
Sbjct: 488 REMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRG 547
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
K + AL + KP + + +I + + A IF QM+ C P+LVT
Sbjct: 548 EKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTH 607
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN-TMLDACAAEKR 292
N +++ + G EA+K++ + E GL PDI ++N T C+ +
Sbjct: 608 NTIMEGLYKAGDCVEALKIWDRILE-----------AGLQ-PDIISYNITFKGLCSCARV 655
Query: 293 WDDLELVYKRMLHHGLHFNA 312
D +E +Y L G+ NA
Sbjct: 656 SDAIEFLYDA-LDRGILPNA 674
>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
Length = 948
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 133/311 (42%), Gaps = 29/311 (9%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P V Y + L I E + +MR+ +G L P++ YN +
Sbjct: 225 FPTVVIYTILIRGLCGESRISEAESMFRTMRN-------SGML--------PNLYTYNTM 269
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SY 122
++ + + A + Q++ G P+ T+G++++ + + +F +
Sbjct: 270 MDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGV 329
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+PN Y L++ + G EA+S ++E+ I+ Y L + LC + EEA
Sbjct: 330 VPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADG 389
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ ++ K P V+Y LI GN++ A + +QM + PN++T + ++ Y
Sbjct: 390 LLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYC 449
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G E AM L+ EM KGL +PD+ + ++D + + ++K
Sbjct: 450 KAGKMEAAMGLYTEMV-----------IKGL-LPDVVAYTALIDGHFKDGNTKEAFRLHK 497
Query: 302 RMLHHGLHFNA 312
M GLH N
Sbjct: 498 EMQEAGLHPNV 508
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 135/310 (43%), Gaps = 37/310 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ + G + F + D M + KK F P +V+Y ++
Sbjct: 191 PNVVTYGTLIDGCCRQGDFLKAFRLFDEM--IEKKIF-------------PTVVIYTILI 235
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ A + + ++ G P+ TY +M+ E +++ + +
Sbjct: 236 RGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLL 295
Query: 124 PNALAYKVLVNTLWREGKTDEAVSA---VEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
PN + + +L++ L KTDE VSA + DM G+V + +Y L C AG EA
Sbjct: 296 PNVVTFGILIDGLC---KTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEA 352
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVK 238
L +I K P V +Y+ LI+ ++ A + +M K F PN VT N ++
Sbjct: 353 LSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFL-PNAVTYNTLID 411
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
Y + G E+A+++ +M E KG + P+I TF+T++D + +
Sbjct: 412 GYCKEGNMEKAIEVCSQMTE-----------KG-IEPNIITFSTLIDGYCKAGKMEAAMG 459
Query: 299 VYKRMLHHGL 308
+Y M+ GL
Sbjct: 460 LYTEMVIKGL 469
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 94/201 (46%), Gaps = 2/201 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+I VYN +++ + A + ++++ P TY ++++ + +
Sbjct: 331 PNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGL 390
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++++K ++PNA+ Y L++ +EG ++A+ M +GI + + L C
Sbjct: 391 LQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCK 450
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
AGK E A+ ++ P VV+YT LI GN + A + +M+ PN+ T
Sbjct: 451 AGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFT 510
Query: 233 CNIMVKAYLEHGLFEEAMKLF 253
+ ++ + G +A+KLF
Sbjct: 511 LSCLIDGLCKDGRISDAIKLF 531
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 16/171 (9%)
Query: 158 VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217
+ S +L + L C + E M + +P++ T LI +GN+ +A
Sbjct: 629 IDSFSLMFALKACTLKSSLVEGKQMHA-LVINFGFEPIIFLQTSLISMYSATGNVADAHN 687
Query: 218 IFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI 277
+F+++ S NL++ ++ AY+++ +A++LF++M D V PDI
Sbjct: 688 MFDEIP---SKNLISWTSVISAYVDNQRPNKALQLFRQMQMDD------------VQPDI 732
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
T L ACA D E ++ + H GL + + +I S+ G++
Sbjct: 733 VTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEI 783
>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
Length = 769
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 130/309 (42%), Gaps = 47/309 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + + +AG I++ + + MRS+ P +V Y A++
Sbjct: 490 PDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVG---------------CSPTVVTYTALI 534
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV------ 118
+A ++ KQ A + ++ G +P+ TYG +++ + G + +E + K+
Sbjct: 535 HAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDS 594
Query: 119 -----------QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ + PN + Y LV+ L + K D A ++ M G + +Y L
Sbjct: 595 ADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDAL 654
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
C AGK + A ++ K P V +YT LI G + A + +QM K+ C
Sbjct: 655 IDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSC 714
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+PN+VT M+ G E+A+KL M E KG P++ T+ ++D
Sbjct: 715 TPNVVTYTAMIDGLCRIGESEKALKLLSLMEE-----------KG-CSPNVVTYTALIDG 762
Query: 287 CAAEKRWDD 295
+ W D
Sbjct: 763 LG--QSWQD 769
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 108/230 (46%), Gaps = 6/230 (2%)
Query: 106 GKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
GK++ ++ +++ +K ++P+ Y ++ L K ++A ++M+ G+ Y
Sbjct: 436 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTY 495
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
L C AG E+A +++ V P VV+YT LI A L + + A IF++M +
Sbjct: 496 TILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVD 555
Query: 225 F-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY----DKKGLVIPDIYT 279
C PN VT +V + G +A +++ ++ S+ + ++ + + + P++ T
Sbjct: 556 AGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVT 615
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ ++D + D + ML G N + +I +AGK++
Sbjct: 616 YGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKID 665
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/282 (18%), Positives = 119/282 (42%), Gaps = 20/282 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V Y +L+ +++KQ ++ + +G P+ + + ++ Y Y+
Sbjct: 309 PNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKL 368
Query: 115 FRKVQKSYIPNA-LAYKVLVNTLWREGKT------DEAVSAVEDMERRGIVGSAALYYDL 167
++ P + Y + + ++ + K D A +M V + +
Sbjct: 369 LNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANF 428
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-C 226
ARCLC GK ++A + ++ + P +Y+ +I + ++ A +F +MK
Sbjct: 429 ARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGV 488
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+P++ T I++ ++ + GL E+A LF+EM + P + T+ ++ A
Sbjct: 489 TPDVYTYTILIDSFCKAGLIEQAQWLFEEM------------RSVGCSPTVVTYTALIHA 536
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
K+ ++ RM+ G N + ++ +AG +
Sbjct: 537 YLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNI 578
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 85/198 (42%), Gaps = 5/198 (2%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N ++ C R W A L +LK G +PS TY +++V+ + G+ +L + +++ +
Sbjct: 178 NVLVRRCCRGGMWNEALEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSE 237
Query: 121 S-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
S + + + L +EG+ +A+ + ER L + L A +E
Sbjct: 238 SGFCMDRFTVGCFAHALCKEGRWADALDMI---EREDFKLDTVLCTHMISGLMEASYFDE 294
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCSPNLVTCNIMVK 238
A+ + ++ + P VV+Y L+ L + I N M C+PN N +V
Sbjct: 295 AMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVH 354
Query: 239 AYLEHGLFEEAMKLFQEM 256
+Y + A KL M
Sbjct: 355 SYCNEKDYAYAYKLLNRM 372
>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 689
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/312 (21%), Positives = 139/312 (44%), Gaps = 33/312 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +Y ++ L + G + + ++ D M + R+ PD+ YN ++
Sbjct: 182 PDVFSYSTVINDLAKTGKLDDALELFDEMS---------------ERRVAPDVTCYNILI 226
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
+ ++ K + A + +L + P+ T+ +++ + CG+ + + + +++++
Sbjct: 227 DGFLKEKDHKMAMQLWDKLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWDRMKQNER 286
Query: 124 PNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
L Y L++ L EG D+A S ++ R Y + C GK +E+L
Sbjct: 287 EKDLYTYSSLIHGLCDEGNVDKAESVFNELVERKAFIDVVTYNTMLGGFCRCGKIKESL- 345
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAY 240
++ +I + N +VSY LI+ L++G I A I+ M K + + N T I +
Sbjct: 346 ELWRIMEQRNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADN-TTYGIFIHGL 404
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+G +A+ + QE+ H+ D+Y + +++D ++R ++ +
Sbjct: 405 CVNGYVNKALGVMQEVESKGGHL------------DVYAYASIIDCLCKKRRLEEASNLV 452
Query: 301 KRMLHHGLHFNA 312
K M HG+ N+
Sbjct: 453 KEMSKHGVELNS 464
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/341 (18%), Positives = 129/341 (37%), Gaps = 28/341 (8%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S YP+ + + L + G + + + D M+ ++K D+ Y+
Sbjct: 250 SVYPNVKTHNIMISGLSKCGRVDDCLKIWDRMKQNEREK---------------DLYTYS 294
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
++++ + A V +L ++ TY ++ CGK E +R +++
Sbjct: 295 SLIHGLCDEGNVDKAESVFNELVERKAFIDVVTYNTMLGGFCRCGKIKESLELWRIMEQR 354
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
N ++Y +L+ L GK DEA M +G Y LC G +AL
Sbjct: 355 NSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADNTTYGIFIHGLCVNGYVNKAL 414
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
M ++ V +Y +I ++ A+ + +M K+ N CN ++
Sbjct: 415 GVMQEVESKGGHLDVYAYASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNALIGGL 474
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ +A L + M ++ +P + ++N ++ ++ +
Sbjct: 475 IRDSRLSDASLLMRGMGKNG------------CLPTVVSYNILICGLCEAGKFGEASAFV 522
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
K ML +GL + K + ++ R K+EL W ++
Sbjct: 523 KEMLENGLKPDLKTYSILLGGLCRDRKIELALELWHQFLQS 563
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 84/187 (44%), Gaps = 2/187 (1%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P +V YN ++ ++ A ++++ + G KP TY +++ + K L E
Sbjct: 497 PTVVSYNILICGLCEAGKFGEASAFVKEMLENGLKPDLKTYSILLGGLCRDRKIELALEL 556
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ + +Q P+ + + +L++ L GK D+A++ + +ME R + Y L
Sbjct: 557 WHQFLQSGLEPDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGYFK 616
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
A + + K+ +P ++SY +++ + A F+ +N P + T
Sbjct: 617 VRDSNRATVIWGYMYKMGLQPDIISYNTILKGLCLCHRVSYAIEFFDDARNHGIFPTVYT 676
Query: 233 CNIMVKA 239
NI+V+A
Sbjct: 677 WNILVRA 683
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 83/181 (45%), Gaps = 12/181 (6%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P +Y L+N + + S E G+ + Y L + C + E+A
Sbjct: 112 PGIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGF 171
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + K KP V SY+ +I +G + +A +F++M + +P++ NI++ +L+
Sbjct: 172 LNWMWKEGFKPDVFSYSTVINDLAKTGKLDDALELFDEMSERRVAPDVTCYNILIDGFLK 231
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ AM+L+ ++ EDS+ V P++ T N M+ + R DD ++ R
Sbjct: 232 EKDHKMAMQLWDKLLEDSS-----------VYPNVKTHNIMISGLSKCGRVDDCLKIWDR 280
Query: 303 M 303
M
Sbjct: 281 M 281
>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1136
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 139/309 (44%), Gaps = 19/309 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
P + NA+L + V+ + + L+++ ++ P T+ +++ V+ A G +
Sbjct: 194 FNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSS 253
Query: 113 EFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+K++KS Y P + Y +++ ++G+ A+ ++ M+ +G+ Y L L
Sbjct: 254 YLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDL 313
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C + + + + + + K P V+Y LI + G + A+ + N+M +F SPN
Sbjct: 314 CRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNH 373
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N ++ ++ G F+EA+K+F M + KGL P ++ +LD
Sbjct: 374 VTFNALIDGHISEGNFKEALKMFYMM-----------EAKGLT-PSEVSYGVLLDGLCKN 421
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR----ADRITP 346
+D Y RM +G+ + MI + G ++ + +++ D +T
Sbjct: 422 AEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTY 481
Query: 347 PALIKERFC 355
ALI FC
Sbjct: 482 SALING-FC 489
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/310 (20%), Positives = 130/310 (41%), Gaps = 35/310 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS-----------------LPKKKFKTGTLE 47
P V Y ++ + G K +++D M+S + G L
Sbjct: 266 PTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLL 325
Query: 48 RWDPR---LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
D R + P+ V YN ++N + A +L ++ G P+ T+ +++ ++
Sbjct: 326 LRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHIS 385
Query: 105 CGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + + F ++ K P+ ++Y VL++ L + + D A M+R G+
Sbjct: 386 EGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRIT 445
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + LC G +EA++ ++++ K P +V+Y+ LI G + A I ++
Sbjct: 446 YTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIY 505
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
SPN + + ++ G +EA+++++ M + + D +TFN
Sbjct: 506 RVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGH------------TRDHFTFNV 553
Query: 283 MLDA-CAAEK 291
++ + C A K
Sbjct: 554 LVTSLCKAGK 563
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 129/327 (39%), Gaps = 28/327 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ + G K + + + + ++ G L P+ ++Y+ ++
Sbjct: 476 PDIVTYSALINGFCKVGRFK-------TAKEIVCRIYRVG--------LSPNGIIYSTLI 520
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKSYI 123
C R + A + + + +G T+ +++ + GK EF R +
Sbjct: 521 YNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGIL 580
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN +++ L+N G+ +A S ++M + G + Y L + LC G EA
Sbjct: 581 PNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKF 640
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + V V Y L+ A SGN+ A +F +M + P+ T ++
Sbjct: 641 LKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCR 700
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G A+ LF + AE +G V+P+ + +D +W ++
Sbjct: 701 KGKTVIAI-LFAKEAE----------ARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQ 749
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
M + G + MI SR GK+E
Sbjct: 750 MDNLGHTPDIVTTNAMIDGYSRMGKIE 776
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 122/287 (42%), Gaps = 31/287 (10%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+E D +N +++ C + AF +++ + G T ++ V+ ++
Sbjct: 860 VEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESR 919
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI----VGSAALYYDL 167
++ K I P + Y L+N L R G A E+M I V +A+ L
Sbjct: 920 MVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRAL 979
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227
A+C GK +EA + + + K+ P + S+T L+ C +GN+ A + M N C
Sbjct: 980 AKC----GKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSN-CG 1034
Query: 228 --PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
+LV+ N+++ G A +L++EM D + + T+ ++
Sbjct: 1035 LKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDG------------FLANATTYKALIR 1082
Query: 286 ACAA-EKRWDDLELVYKRMLHHG------LHFNAKRHLRMILDASRA 325
A E + +++ K +L G L ++ R+L+M ++ +A
Sbjct: 1083 GLLARETAFSGADIILKDLLARGFITSMSLSQDSHRNLKMAMEKLKA 1129
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 117/290 (40%), Gaps = 39/290 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V ++ + G I++ D+ LP+ + G P++ YN +L
Sbjct: 757 PDIVTTNAMIDGYSRMGKIEKTNDL------LPEMGNQNGG---------PNLTTYNILL 801
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ +RK +F + + + G P T ++L + N++ E K+ K++I
Sbjct: 802 HGYSKRKDVSTSFLLYRSIILNGILPDKLT---CHSLVLGICESNML-EIGLKILKAFIC 857
Query: 125 NAL-----AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ + +L++ G+ + A V+ M GI + L + +E
Sbjct: 858 RGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQE 917
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMV 237
+ M + ++ K P Y GLI G+I+ A + +M C PN V + MV
Sbjct: 918 SRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPN-VAESAMV 976
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
+A + G +EA L + M K ++P I +F T++ C
Sbjct: 977 RALAKCGKADEATLLLRFML------------KMKLVPTIASFTTLMHLC 1014
>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
Length = 768
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 137/331 (41%), Gaps = 35/331 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFK-----------------TG 44
+PD + ++ L Q G + E ++ + R + KF
Sbjct: 208 FPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVA 267
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ER + PD+V YN ++ + + + A L ++ QG P TY +++
Sbjct: 268 LVERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCK 327
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G E + V K ++P+ + Y L+N L EG + A+ + + + + +
Sbjct: 328 SGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVV 387
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-- 221
Y L + LC G AL M+++ + P + +Y +I GNI +AA + N
Sbjct: 388 YNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAI 447
Query: 222 MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
+K + P++ T N ++ Y + + A++L + M + PD+ T+N
Sbjct: 448 VKGYL-PDVFTFNTLIDGYCKRLKLDSALQLVERMWTYG------------IAPDVITYN 494
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
++L+ + ++ ++ M+ G NA
Sbjct: 495 SVLNGLCKAGKAKEVNETFEEMILKGCRPNA 525
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 92/392 (23%), Positives = 158/392 (40%), Gaps = 36/392 (9%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+ +N VL+A ++ + +L ++ ++G + T + + + G+
Sbjct: 209 PDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVAL 268
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
++ P+ + Y L+ L ++ K EA + M +G + Y + C +
Sbjct: 269 VERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKS 328
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN--QMKNFCSPNLVT 232
G +EA + P V+Y LI G+I+ A +FN Q K+ P+LV
Sbjct: 329 GMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDL-KPDLVV 387
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNH--------INREYDKKGLV----------- 273
N +VK GL A+++ EM E+ H I K G +
Sbjct: 388 YNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAI 447
Query: 274 ----IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+PD++TFNT++D + D + +RM +G+ + + ++ +AGK +
Sbjct: 448 VKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAK 507
Query: 330 LLEITWEHL----ARADRITPPALIKERFC--NRLENKDYGSAISCLVSHPVSGSPEFSR 383
+ T+E + R + IT LI E FC N+LE G + V + F
Sbjct: 508 EVNETFEEMILKGCRPNAITYNILI-ENFCKINQLEEAS-GVIVRMCQDGLVPDAVSF-- 563
Query: 384 NAWLKFFKENSQHFGQDTLIQLLHEASSSLTT 415
N + F N G L Q L E S T
Sbjct: 564 NTLIHGFCRNGDLDGAYLLFQKLDEKGYSATA 595
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 128/305 (41%), Gaps = 29/305 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ L G I+ ++ + E L+PD+VVYN+++
Sbjct: 348 PDRVTYCSLINGLCAEGDIERALELFN---------------EAQAKDLKPDLVVYNSLV 392
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEFFRKVQKSYI 123
R+ A V+ ++ ++G P TY +++ + G + + K Y+
Sbjct: 393 KGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYL 452
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + L++ + K D A+ VE M GI Y + LC AGK +E
Sbjct: 453 PDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNET 512
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+++ +P ++Y LI+ ++ A+ + +M ++ P+ V+ N ++ +
Sbjct: 513 FEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCR 572
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+G + A LFQ++ E + TFN ++ A +++ E ++
Sbjct: 573 NGDLDGAYLLFQKLDEKGYSATAD------------TFNILIGAYSSKLNMQMAEKIFGE 620
Query: 303 MLHHG 307
M+ G
Sbjct: 621 MISKG 625
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 123/303 (40%), Gaps = 33/303 (10%)
Query: 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIV--VYNAVLNA 66
AYR++ L AG + ++ + S RS L PD + +Y A + A
Sbjct: 37 AYRALIRELVSAGRLDDVDAALASARS----------------HLAPDSLQPLYVASIQA 80
Query: 67 CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYIPN 125
R + A +++ P+A Y +M+ ++ ++ ++ + R + P+
Sbjct: 81 YARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPD 140
Query: 126 ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMD 185
A + V + + G+ A+ + + RG A Y + R L + G A D
Sbjct: 141 ARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFD 200
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNI-QNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHG 244
++ P V ++ ++ A G++ ++ A + +K S N TCNI ++ E G
Sbjct: 201 EMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDG 260
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
EEA+ L + M V PD+ T+NT++ + + + RM+
Sbjct: 261 RLEEAVALVERMG-------------AYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMM 307
Query: 305 HHG 307
+ G
Sbjct: 308 NQG 310
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 107/240 (44%), Gaps = 15/240 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK-YNLV 111
+ PD + L + + A +L+ L ++G Y V+ + A G YN
Sbjct: 137 VAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNAR 196
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F + + P+ + +++ L ++G E+ + + + +RG+ + R L
Sbjct: 197 HLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGL 256
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMKNFCSPNL 230
C G+ EEA+ ++++ P VV+Y L++ C DS + A Y+ M C P+
Sbjct: 257 CEDGRLEEAVALVERMGAYV-APDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDD 315
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T N ++ Y + G+ +EA +L ++ KG V PD T+ ++++ AE
Sbjct: 316 FTYNTIIDGYCKSGMLQEATELLKDAV-----------FKGFV-PDRVTYCSLINGLCAE 363
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 96/214 (44%), Gaps = 21/214 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFD-------------------VIDSMRSLPKKKFKTGT 45
PD + Y S+ L +AG KE+ + +I++ + + + +G
Sbjct: 488 PDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGV 547
Query: 46 LERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ R L PD V +N +++ R +GA+ + Q+L ++G +A T+ +++ +
Sbjct: 548 IVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSS 607
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
+ + F + + K Y P+ Y++LV+ L + D A + + +M +G V S A
Sbjct: 608 KLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMAT 667
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVV 197
+ + L + EA+ + + ++ P VV
Sbjct: 668 FGRMLNLLAMNHRVSEAVAIIHIMVRMGVVPEVV 701
>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 523
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 117/288 (40%), Gaps = 36/288 (12%)
Query: 8 VAYRSIAVTLG-------QAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+ +R VTLG Q +E ++DSM P++V+Y
Sbjct: 143 LGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFG---------------FVPNVVIY 187
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N V+N + + A V ++++G + A TY ++ + G++ R + K
Sbjct: 188 NTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVK 247
Query: 121 SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
I PN + + L++T +EG EA + ++M RR +V + Y L C G +
Sbjct: 248 RKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGD 307
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVK 238
A D + P VV+Y LI S +++ +F +M + T N ++
Sbjct: 308 AKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIH 367
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
Y + G A K+F M + V PDI T+N +LD
Sbjct: 368 GYCQAGKLNVAQKVFNRMVDCG------------VSPDIVTYNILLDC 403
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 114/260 (43%), Gaps = 14/260 (5%)
Query: 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREG 140
++ + G +PS T G ++ ++ + ++PN + Y ++N L +
Sbjct: 139 KMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNR 198
Query: 141 KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYT 200
+ A+ ME++GI A Y L L ++G+ +A + + K P V+ +T
Sbjct: 199 DLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFT 258
Query: 201 GLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
LI + GN+ A ++ +M + PN+ T N ++ + HG +A +F M
Sbjct: 259 ALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVS- 317
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
KG PD+ T+NT++ KR +D ++ M + GL +A + +I
Sbjct: 318 ----------KG-CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLI 366
Query: 320 LDASRAGKVELLEITWEHLA 339
+AGK+ + + + +
Sbjct: 367 HGYCQAGKLNVAQKVFNRMV 386
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 37/337 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V Y ++ L +G D +R + K+K ++P+++ + A+++
Sbjct: 218 DAVTYNTLISGLSNSGRWT---DAARLLRDMVKRK------------IDPNVIFFTALID 262
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNLVYEFFRKVQK 120
V+ A + +++ ++ P+ TY G + L KY F V K
Sbjct: 263 TFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKY----MFDLMVSK 318
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
P+ + Y L+ + + ++ + +M +G+VG A Y L C AGK A
Sbjct: 319 GCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVA 378
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
+++ P +V+Y L+ ++G I+ A + + K+ +++T NI+++
Sbjct: 379 QKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQG 438
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+EA LF+ + +KG V PD + TM+ + + + +
Sbjct: 439 LCRTDKLKEAWCLFRSLT-----------RKG-VKPDAIAYITMISGLCRKGLQREADKL 486
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWE 336
+RM G + + + + D + EL++ E
Sbjct: 487 CRRMKEDGFMPSERIYDETLRDHYTSLSAELIKAAHE 523
>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 600
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/309 (20%), Positives = 137/309 (44%), Gaps = 31/309 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ L A + ++++ M + +EP++VVY+ +L
Sbjct: 127 PDVVTYGTLIRGLCDAADVDTAVELLNEM---------------CESGIEPNVVVYSCLL 171
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + +WE V +++ +G +P Y +++ + GK + ++
Sbjct: 172 HGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLE 231
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y VL+N++ +EG EA+ ++M +G+ Y L L S + +EA+
Sbjct: 232 PNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMAL 291
Query: 184 MDKICKVAN--KPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
++++ + +P ++++ +I G ++ A + M +N C NLV N+++
Sbjct: 292 LEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGL 351
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
L ++AM+L EMA + PD +T++ +++ ++ + E
Sbjct: 352 LRVHKVKKAMELMDEMASSG------------LQPDSFTYSILINGFCKMRQVERAESYL 399
Query: 301 KRMLHHGLH 309
M H G+
Sbjct: 400 SEMRHQGME 408
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/367 (22%), Positives = 150/367 (40%), Gaps = 38/367 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTL-ERWDP 51
PD V Y ++ +L + G +K+ V+D M L K G++ E D
Sbjct: 197 PDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDL 256
Query: 52 R-------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ---KPSATTYGLVMEV 101
R ++PD+V YN ++ + + A +L+++ QG+ +P T+ V+
Sbjct: 257 RKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEM-MQGETRVRPDLMTFNSVIHG 315
Query: 102 MLACGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ G + + ++ N +A+ +L+ L R K +A+ +++M G+
Sbjct: 316 LCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPD 375
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
+ Y L C + E A + ++ +P V Y L++A D G + A +FN
Sbjct: 376 SFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFN 435
Query: 221 QMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
+M C + + M+ HG F+ K E ++ +GL IPD T+
Sbjct: 436 EMDRNCKLDAAAYSTMI-----HGAFKSGEKKIAE------EFLKDMIDEGL-IPDAVTY 483
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE-LLEITWEHLA 339
+ ++ A E V K+M G + +I G E +LE+T E A
Sbjct: 484 SIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILELTREMTA 543
Query: 340 RADRITP 346
+ + P
Sbjct: 544 KDVALDP 550
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 111/286 (38%), Gaps = 79/286 (27%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D V YN VL A R+ + A ++L+ + + + S
Sbjct: 55 DAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASR----------------------- 91
Query: 116 RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
PNA++Y L+ L + + +AV + M+ G+ Y L R LC A
Sbjct: 92 --------PNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAA 143
Query: 176 KCEEALMQMDKICKV-----------------------------------ANKPLVVSYT 200
+ A+ ++++C+ +P VV YT
Sbjct: 144 DVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYT 203
Query: 201 GLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
LI + G ++ AA + + M + PN+VT N+++ + + G EA+ L + M+E
Sbjct: 204 ALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSE- 262
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
KG V PD+ T+NT++ ++ D+ + + M+
Sbjct: 263 ----------KG-VQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQ 297
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 16/176 (9%)
Query: 158 VGSAALYYDLARCLCSAGKCEEALMQMDKIC---KVANKPLVVSYTGLIQA-CLDSGNIQ 213
V A Y + LC G + AL + + ++A++P +SYT L++A C D Q
Sbjct: 53 VRDAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQ 112
Query: 214 NAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV 273
+ + P++VT +++ + + A++L EM E +
Sbjct: 113 AVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESG------------I 160
Query: 274 IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
P++ ++ +L RW+ + V++ M G+ + + +I R GKV+
Sbjct: 161 EPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVK 216
>gi|255660992|gb|ACU25665.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 376
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 110/214 (51%), Gaps = 3/214 (1%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + ++ PD VVYNA+LN R + + F + + + +G + S +++ ++M + G
Sbjct: 15 EIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSKGNR-SVSSFNIMMRGLFDNG 73
Query: 107 KYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K N V + ++KS ++ +++ Y +LV+ + G ++++ +E E++G V A Y
Sbjct: 74 KVNEVISIWELMKKSGFVEDSITYGILVHGFCKNGYINKSLHVLEMAEQKGGVLDAFAYS 133
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+ LC ++A+ ++ + K KP Y L+ + ++A +F +M
Sbjct: 134 AMINGLCKEANLDKAVSVLNGMIKSGCKPNAHVYNTLVNGLVGVSKFEDAIRVFREMGTV 193
Query: 226 -CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
CSP ++T N ++ ++ +F EA L +E+ +
Sbjct: 194 HCSPTIITYNTLINGLCKNEMFGEAYNLVKELLD 227
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 122/292 (41%), Gaps = 29/292 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D++ Y + + G+I + S+ L + K G L D Y+A++N
Sbjct: 93 DSITYGILVHGFCKNGYINK------SLHVLEMAEQKGGVL---------DAFAYSAMIN 137
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ + A VL + + G KP+A Y ++ ++ K+ FR++ + P
Sbjct: 138 GLCKEANLDKAVSVLNGMIKSGCKPNAHVYNTLVNGLVGVSKFEDAIRVFREMGTVHCSP 197
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ Y L+N L + EA + V+++ +G+ Y L + LC K E AL
Sbjct: 198 TIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVERALQLW 257
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
+++ KP V LI G +Q A ++ M + C+PNLV+ N +++ + +
Sbjct: 258 NQVTSKGFKPDVQMLNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKD 317
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
G A+ ++ + + + PDI ++N L + R D
Sbjct: 318 GDIRNALVIWARILRNG------------LEPDIISYNITLKGLCSCNRISD 357
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/137 (18%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D L P ++ Y+ ++ + E A + Q+ +G KP +++ + + G
Sbjct: 224 ELLDKGLNPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMLNILIHGLCSVG 283
Query: 107 KYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K L + + + PN +++ L+ +++G A+ + R G+ Y
Sbjct: 284 KMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343
Query: 166 DLARCLCSAGKCEEALM 182
+ LCS + +A++
Sbjct: 344 ITLKGLCSCNRISDAIL 360
>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
Length = 821
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 139/325 (42%), Gaps = 23/325 (7%)
Query: 53 LEPDIVVYNAVLNACVRR-KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
L P +V YN +L+ + + W +L +++ +G T V+ ACG+ L+
Sbjct: 240 LSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSKGLGFDEFTCSTVIS---ACGREGLL 296
Query: 112 ---YEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
EFF ++ + Y P + Y L+ + G EA+S +++ME A Y +L
Sbjct: 297 DEAKEFFVGLKSQGYAPGTVTYNALLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNEL 356
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFC 226
AG EE +D + + KP V+YT +I A + + A +++QMK + C
Sbjct: 357 VAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGC 416
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+PN+ T N ++ + EE MK+ +M D NR T+NTML
Sbjct: 417 APNVCTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNR------------ITWNTMLSM 464
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
C + ++ V++ M G + +I + R G E ++ + A TP
Sbjct: 465 CGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLEAG-FTP 523
Query: 347 PALIKERFCNRLENK-DYGSAISCL 370
N L + D+ +A S +
Sbjct: 524 SVATYNALLNALARRGDWRTAESVI 548
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 112/262 (42%), Gaps = 14/262 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + P + YNA+LNA RR W A V++ +K +G KPS T+Y L++ G
Sbjct: 515 EMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLILNSYAKGG 574
Query: 107 KYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ + + +I P+ + + L+ ++ A + +++ G ++
Sbjct: 575 YVKGINRIEKDIYDGHIFPSWMLLRTLILANFKCRALAGMERAFQALQKHGYKPDLVVFN 634
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+ + A M I + +P +V+Y L+ G A I +++N
Sbjct: 635 SMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGGECWKAEEILRELQNS 694
Query: 226 CS-PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
+L++ N ++K + GL EA++ EM I+R + P I T+NT +
Sbjct: 695 GDKSDLISYNTVIKGFCRQGLMHEALRTLSEM------ISRG------IRPCIVTYNTFV 742
Query: 285 DACAAEKRWDDLELVYKRMLHH 306
AA+ + +++ V M H
Sbjct: 743 GGYAAKGMFAEIDEVLSYMTKH 764
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 67/327 (20%), Positives = 121/327 (37%), Gaps = 64/327 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P TV Y ++ G+AG E ++ M D PD V YN ++
Sbjct: 313 PGTVTYNALLQVFGKAGIYSEALSIMKEME---------------DNNCPPDAVTYNELV 357
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
A VR +E ++ + + G KP
Sbjct: 358 AAYVRAGFYEEGAALIDTMTENGIKP---------------------------------- 383
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
NA+ Y ++N R + D+A+S + M+ G + Y + L + EE + +
Sbjct: 384 NAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKIL 443
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--PNLVTCNIMVKAYLE 242
+ P +++ ++ C + G + +F +MK+ C P+ T N ++ A
Sbjct: 444 CDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKS-CGFEPDRDTFNTLITASGR 502
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +A K++ EM E P + T+N +L+A A W E V K
Sbjct: 503 CGSDIDAEKIYDEMLEAG------------FTPSVATYNALLNALARRGDWRTAESVIKD 550
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
M + G + + ++ ++ G V+
Sbjct: 551 MKNKGFKPSETSYSLILNSYAKGGYVK 577
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 27/222 (12%)
Query: 95 YGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKT-DEAVSAVEDM 152
Y ++ CGKY F K+ +S + P + Y V+++ + G++ ++ + +++M
Sbjct: 212 YTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEM 271
Query: 153 ERRGIVGSAALYYDLARCLCSAGKC-EEALMQMDKICKVANK-----PLVVSYTGLIQAC 206
+G L +D C C E L+ K V K P V+Y L+Q
Sbjct: 272 RSKG------LGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVF 325
Query: 207 LDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
+G A I +M+ N C P+ VT N +V AY+ G +EE L M E+
Sbjct: 326 GKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENG----- 380
Query: 266 EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
+ P+ T+ TM++A + D +Y +M G
Sbjct: 381 -------IKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESG 415
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/212 (19%), Positives = 89/212 (41%), Gaps = 2/212 (0%)
Query: 49 WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY 108
+D + P ++ ++ A + + G Q L++ G KP + ++ + +
Sbjct: 587 YDGHIFPSWMLLRTLILANFKCRALAGMERAFQALQKHGYKPDLVVFNSMLSMFSRKNMH 646
Query: 109 NLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ +E +Q+ + P+ + Y L++ R G+ +A + +++ G Y +
Sbjct: 647 DRAHEIMHLIQECGLQPDLVTYNSLMDLYARGGECWKAEEILRELQNSGDKSDLISYNTV 706
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
+ C G EAL + ++ +P +V+Y + G + + M K+ C
Sbjct: 707 IKGFCRQGLMHEALRTLSEMISRGIRPCIVTYNTFVGGYAAKGMFAEIDEVLSYMTKHDC 766
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
PN +T I+V Y + F+EAM + +
Sbjct: 767 RPNELTYKIVVDGYCKAKKFKEAMDFVSTITD 798
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 19/153 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ + G E + + +R L K+ D++ YN V+
Sbjct: 663 PDLVTYNSLMDLYARGG---ECWKAEEILRELQNSGDKS------------DLISYNTVI 707
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
R+ A L ++ +G +P TY + A G + + E + K
Sbjct: 708 KGFCRQGLMHEALRTLSEMISRGIRPCIVTYNTFVGGYAAKGMFAEIDEVLSYMTKHDCR 767
Query: 124 PNALAYKVLVNTLWREGKTDEA---VSAVEDME 153
PN L YK++V+ + K EA VS + D++
Sbjct: 768 PNELTYKIVVDGYCKAKKFKEAMDFVSTITDID 800
>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
Length = 1274
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 139/309 (44%), Gaps = 19/309 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
P + NA+L + V+ + + L+++ ++ P T+ +++ V+ A G +
Sbjct: 154 FNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSS 213
Query: 113 EFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+K++KS Y P + Y +++ ++G+ A+ ++ M+ +G+ Y L L
Sbjct: 214 YLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDL 273
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C + + + + + + K P V+Y LI + G + A+ + N+M +F SPN
Sbjct: 274 CRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNH 333
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N ++ ++ G F+EA+K+F M + KGL P ++ +LD
Sbjct: 334 VTFNALIDGHISEGNFKEALKMFYMM-----------EAKGLT-PSEVSYGVLLDGLCKN 381
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR----ADRITP 346
+D Y RM +G+ + MI + G ++ + +++ D +T
Sbjct: 382 AEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTY 441
Query: 347 PALIKERFC 355
ALI FC
Sbjct: 442 SALING-FC 449
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/310 (20%), Positives = 130/310 (41%), Gaps = 35/310 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS-----------------LPKKKFKTGTLE 47
P V Y ++ + G K +++D M+S + G L
Sbjct: 226 PTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLL 285
Query: 48 RWDPR---LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
D R + P+ V YN ++N + A +L ++ G P+ T+ +++ ++
Sbjct: 286 LRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHIS 345
Query: 105 CGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + + F ++ K P+ ++Y VL++ L + + D A M+R G+
Sbjct: 346 EGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRIT 405
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + LC G +EA++ ++++ K P +V+Y+ LI G + A I ++
Sbjct: 406 YTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIY 465
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
SPN + + ++ G +EA+++++ M + + D +TFN
Sbjct: 466 RVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGH------------TRDHFTFNV 513
Query: 283 MLDA-CAAEK 291
++ + C A K
Sbjct: 514 LVTSLCKAGK 523
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 129/327 (39%), Gaps = 28/327 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ + G K + + + + ++ G L P+ ++Y+ ++
Sbjct: 436 PDIVTYSALINGFCKVGRFK-------TAKEIVCRIYRVG--------LSPNGIIYSTLI 480
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKSYI 123
C R + A + + + +G T+ +++ + GK EF R +
Sbjct: 481 YNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGIL 540
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN +++ L+N G+ +A S ++M + G + Y L + LC G EA
Sbjct: 541 PNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKF 600
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + V V Y L+ A SGN+ A +F +M + P+ T ++
Sbjct: 601 LKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCR 660
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G A+ LF + AE +G V+P+ + +D +W ++
Sbjct: 661 KGKTVIAI-LFAKEAE----------ARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQ 709
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
M + G + MI SR GK+E
Sbjct: 710 MDNLGHTPDIVTTNAMIDGYSRMGKIE 736
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 122/287 (42%), Gaps = 31/287 (10%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+E D +N +++ C + AF +++ + G T ++ V+ ++
Sbjct: 820 VEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESR 879
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI----VGSAALYYDL 167
++ K I P + Y L+N L R G A E+M I V +A+ L
Sbjct: 880 MVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRAL 939
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227
A+C GK +EA + + + K+ P + S+T L+ C +GN+ A + M N C
Sbjct: 940 AKC----GKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSN-CG 994
Query: 228 --PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
+LV+ N+++ G A +L++EM D + + T+ ++
Sbjct: 995 LKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDG------------FLANATTYKALIR 1042
Query: 286 ACAA-EKRWDDLELVYKRMLHHG------LHFNAKRHLRMILDASRA 325
A E + +++ K +L G L ++ R+L+M ++ +A
Sbjct: 1043 GLLARETAFSGADIILKDLLARGFITSMSLSQDSHRNLKMAMEKLKA 1089
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 117/290 (40%), Gaps = 39/290 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V ++ + G I++ D+ LP+ + G P++ YN +L
Sbjct: 717 PDIVTTNAMIDGYSRMGKIEKTNDL------LPEMGNQNGG---------PNLTTYNILL 761
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ +RK +F + + + G P T ++L + N++ E K+ K++I
Sbjct: 762 HGYSKRKDVSTSFLLYRSIILNGILPDKLT---CHSLVLGICESNML-EIGLKILKAFIC 817
Query: 125 NAL-----AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ + +L++ G+ + A V+ M GI + L + +E
Sbjct: 818 RGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQE 877
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMV 237
+ M + ++ K P Y GLI G+I+ A + +M C PN V + MV
Sbjct: 878 SRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPN-VAESAMV 936
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
+A + G +EA L + M K ++P I +F T++ C
Sbjct: 937 RALAKCGKADEATLLLRFML------------KMKLVPTIASFTTLMHLC 974
>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
Length = 863
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 80/362 (22%), Positives = 142/362 (39%), Gaps = 75/362 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + T G+ ++++ D++ M S G+L PDI YN +L
Sbjct: 280 PDLTTYSHLVETFGKLRRLEKVSDLLSEMAS-------GGSL--------PDITSYNVLL 324
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
A + + A V Q++ G P+A TY +++ + G+Y+ V + F +++ S
Sbjct: 325 EAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTD 384
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI-------------------------- 157
P+A Y +L+ G E V+ DM I
Sbjct: 385 PDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKI 444
Query: 158 ---------VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
V S+ Y + A EEAL+ + + +V + P + +Y L+ +
Sbjct: 445 LQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFAR 504
Query: 209 SGNIQNAAYIFNQMKNFCSP-NLVTCNIMVKAYLEHGLFEEAMKLFQEMAE--------- 258
G ++ + I +++ + P N T N ++AY + G FEEA+K + +M +
Sbjct: 505 GGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERT 564
Query: 259 --------------DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
D E K ++P I + ML +RWDD+ + + ML
Sbjct: 565 LEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEML 624
Query: 305 HH 306
+
Sbjct: 625 SN 626
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/328 (21%), Positives = 138/328 (42%), Gaps = 36/328 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y + LG+ G + + +V D M S + + Y A++
Sbjct: 139 PNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSR---------------SVFSYTALI 183
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE----FFRKVQK 120
NA R ++E + +L ++K PS TY V+ AC + L +E F +++
Sbjct: 184 NAYGRNGRYETSLELLDRMKNDKISPSILTYNTVIN---ACARGGLDWEGLLGLFAEMRH 240
Query: 121 SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
I P+ + Y L++ G DEA M GIV Y L + E+
Sbjct: 241 EGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEK 300
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVK 238
+ ++ + P + SY L++A SG+I+ A +F+QM+ C+PN T ++++
Sbjct: 301 VSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLN 360
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ + G +++ +LF EM + PD T+N +++ + ++
Sbjct: 361 LFGQSGRYDDVRQLFLEMKSSNTD------------PDAATYNILIEVFGEGGYFKEVVT 408
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAG 326
++ M+ + + + + +I + G
Sbjct: 409 LFHDMVEENIEPDMETYEGIIFACGKGG 436
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 118/282 (41%), Gaps = 14/282 (4%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D + PD+ Y+ ++ + ++ E +L ++ G P T+Y +++E G
Sbjct: 275 DGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIK 334
Query: 110 LVYEFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
F ++Q + PNA Y VL+N + G+ D+ +M+ AA Y L
Sbjct: 335 EAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILI 394
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCS 227
G +E + + + +P + +Y G+I AC G ++A I M N
Sbjct: 395 EVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIV 454
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P+ +++A+ + L+EEA+ F M E ++ P I T++++L +
Sbjct: 455 PSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSN------------PSIETYHSLLYSF 502
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
A + E + R++ G+ N I + GK E
Sbjct: 503 ARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFE 544
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 101/223 (45%), Gaps = 16/223 (7%)
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY--IPNALAYKVLVNTLWREGKTDEAV 146
K S + LV + G + F+ +Q+ PN Y ++++ L REG D+ +
Sbjct: 102 KLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCL 161
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
++M +G+ S Y L G+ E +L +D++ P +++Y +I AC
Sbjct: 162 EVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNDKISPSILTYNTVINAC 221
Query: 207 LDSG-NIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
G + + +F +M++ P++VT N ++ A GL +EA +F+ M +
Sbjct: 222 ARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMND------ 275
Query: 265 REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
G ++PD+ T++ +++ +R + + + M G
Sbjct: 276 ------GGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGG 312
>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
sativus]
Length = 686
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 127/286 (44%), Gaps = 15/286 (5%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
L+ + +P++V + ++N R + A +L ++ + G +P+ TYG +++ M
Sbjct: 171 LDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKM 230
Query: 106 GKYNLVYEFFRKVQK--SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G RK+++ IPN + Y +++ LW++G+ +A + +M+ + I
Sbjct: 231 GDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVT 290
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y + C +G+ +A + ++ + P VV+++ LI A + G A ++++M
Sbjct: 291 YNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEML 350
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
P+ VT + M+ + + + A +F KG PDI TFNT
Sbjct: 351 PRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTP-----------TKGCS-PDIITFNT 398
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
++ KR DD + M GL N + +I + G +
Sbjct: 399 LIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDL 444
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/340 (21%), Positives = 142/340 (41%), Gaps = 42/340 (12%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + ++ PD+V ++A++NA V+ ++ A + ++ + PS TY +++
Sbjct: 313 EMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQN 372
Query: 107 KYNLV-YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ + + F+ K P+ + + L+ R + D+ + + +M G+V + Y
Sbjct: 373 RLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYT 432
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-- 223
L C G A + ++ P VV+ L+ D+G +++A +F M+
Sbjct: 433 TLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKS 492
Query: 224 ----------NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS------------- 260
N P++ T NI++ + G F EA +L++EM
Sbjct: 493 KMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID 552
Query: 261 --------NHINREYDKKGL--VIPDIYTFNTMLDA-CAAEKRWDDLELVYKRMLHHGLH 309
+ + +D G PD+ TFNT++ C A D LEL + M G+
Sbjct: 553 GLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLEL-FCEMGQRGIV 611
Query: 310 FNAKRHLRMILDASRAGKVE-LLEITWEHLARA---DRIT 345
+A ++ +I + ++ L+I E ++ D IT
Sbjct: 612 ADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTIT 651
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 101/251 (40%), Gaps = 25/251 (9%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + L + + Y +++ + A +LQ++ G P+ T +++ + G
Sbjct: 418 EMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNG 477
Query: 107 KYNLVYEFFRKVQKSYI------------PNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
K E F+ +QKS + P+ Y +L+ L EGK EA E+M
Sbjct: 478 KLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPH 537
Query: 155 RGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQN 214
RGIV Y + LC + +EA D + + P VV++ LI +G + +
Sbjct: 538 RGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDD 597
Query: 215 AAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV 273
+F +M + + +T ++ + + + A+ +FQEM V
Sbjct: 598 GLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSG------------V 645
Query: 274 IPDIYTFNTML 284
PD T ML
Sbjct: 646 YPDTITIRNML 656
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 89/378 (23%), Positives = 143/378 (37%), Gaps = 79/378 (20%)
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F V+ +P+ + + L+ + R G+ D +S + ME + +A + L +C CS
Sbjct: 69 FGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMPCNAYSFTILMKCFCS 128
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTC 233
K AL KI K+ P VV++ L+ I A +F+QM C PN+VT
Sbjct: 129 CSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQM---CKPNVVTF 185
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDS--------------------------------- 260
++ G EA+ L M ED
Sbjct: 186 TTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEE 245
Query: 261 -NHI-----------------NREYDKKGLVI--------PDIYTFNTMLDACAAEKRWD 294
+HI R D L I PDI T+N M++ RW
Sbjct: 246 VSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWS 305
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLARA---DRITPPALI 350
D E + + ML ++ + +I + GK E E+ E L R+ +T ++I
Sbjct: 306 DAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMI 365
Query: 351 KERFC--NRLENKDYGSAISCLVSHPVSG-SPE-FSRNAWLKFFKENSQHFGQDTLIQLL 406
+ FC NRL+ ++ ++ P G SP+ + N + + + D I+LL
Sbjct: 366 -DGFCKQNRLDAAEHMFYLT-----PTKGCSPDIITFNTLIAGYCRAKR---VDDGIKLL 416
Query: 407 HEASSSLTTRNGSPYPVL 424
HE + + N Y L
Sbjct: 417 HEMTEAGLVANTITYTTL 434
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 66/150 (44%), Gaps = 16/150 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT+ Y S+ L + + E + DSM S K F PD+V +N ++
Sbjct: 542 PDTITYSSMIDGLCKQSRLDEATQMFDSMGS---KSFS------------PDVVTFNTLI 586
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + ++ Q+G A TY ++ + + F+++ S +
Sbjct: 587 TGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVY 646
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDME 153
P+ + + ++ LW + + + AV+ +ED++
Sbjct: 647 PDTITIRNMLTGLWSKEELERAVAMLEDLQ 676
>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 857
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 139/320 (43%), Gaps = 42/320 (13%)
Query: 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACV 68
+Y +I G+ G ++++ M+ R+ P I+ YN V+NAC
Sbjct: 171 SYTAIINAYGRNGQFHASLELLNGMKQ---------------ERVSPSILTYNTVINACA 215
Query: 69 RRK-QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE---FFRKVQKSYI- 123
R WEG + +++ +G +P TY ++ AC L E FR + +S I
Sbjct: 216 RGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLG---ACAHRGLGDEAEMVFRTMNESGIV 272
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL-- 181
P+ Y LV T + + ++ + +ME G + Y L G +EA+
Sbjct: 273 PDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGV 332
Query: 182 -MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKA 239
QM VAN +Y+ L+ G + +F +MK + P+ T NI+++
Sbjct: 333 FRQMQAAGCVAN---AATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQV 389
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ E G F+E + LF +MAE++ V P++ T+ ++ AC ++D + +
Sbjct: 390 FGEGGYFKEVVTLFHDMAEEN------------VEPNMQTYEGLIFACGKGGLYEDAKKI 437
Query: 300 YKRMLHHGLHFNAKRHLRMI 319
M G+ ++K + +I
Sbjct: 438 LLHMNEKGVVPSSKAYTGVI 457
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 117/276 (42%), Gaps = 21/276 (7%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE----FF 115
Y A++NA R Q+ + +L +KQ+ PS TY V+ AC + L +E F
Sbjct: 172 YTAIINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVIN---ACARGGLDWEGLLGLF 228
Query: 116 RKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+++ I P+ + Y L+ G DEA M GIV Y L +
Sbjct: 229 AEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKL 288
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
+ E+ + ++ N P + SY L++A + G+I+ A +F QM+ C N T
Sbjct: 289 NRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATY 348
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
++++ Y +HG +++ LF EM + PD T+N ++ +
Sbjct: 349 SVLLNLYGKHGRYDDVRDLFLEMKVSNTD------------PDAGTYNILIQVFGEGGYF 396
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++ ++ M + N + + +I + G E
Sbjct: 397 KEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYE 432
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 128/311 (41%), Gaps = 50/311 (16%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM---------- 102
++PD++ YN +L AC R + A V + + + G P TY +++
Sbjct: 236 IQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVS 295
Query: 103 -----LACG-------KYNLVYE-------------FFRKVQKSY-IPNALAYKVLVNTL 136
+ CG YN++ E FR++Q + + NA Y VL+N
Sbjct: 296 ELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLY 355
Query: 137 WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV 196
+ G+ D+ +M+ A Y L + G +E + + + +P +
Sbjct: 356 GKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNM 415
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
+Y GLI AC G ++A I M + P+ +++A+ + L+EEA+ +F
Sbjct: 416 QTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNT 475
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
M E ++ P + T+N+++ A A + + E + RM GL +
Sbjct: 476 MNEVGSN------------PTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDV-HS 522
Query: 316 LRMILDASRAG 326
+++A R G
Sbjct: 523 FNGVIEAFRQG 533
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 114/254 (44%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +Y + + G IKE V M++ G + + Y+ +L
Sbjct: 308 PDITSYNVLLEAYAELGSIKEAMGVFRQMQA-------AGCV--------ANAATYSVLL 352
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + +++ + ++K P A TY ++++V G + V F + + +
Sbjct: 353 NLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVE 412
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y+ L+ + G ++A + M +G+V S+ Y + A EEAL+
Sbjct: 413 PNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVM 472
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + +V + P V +Y LI A G + A I ++M ++ ++ + N +++A+ +
Sbjct: 473 FNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQ 532
Query: 243 HGLFEEAMKLFQEM 256
G +EEA+K + EM
Sbjct: 533 GGQYEEAVKSYVEM 546
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 95/219 (43%), Gaps = 16/219 (7%)
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY--IPNALAYKVLVNTLWREGKTDEAV 146
K S + LV + G + F+ +Q+ PN + +++ L REG D+
Sbjct: 95 KLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIHTIMITLLGREGLLDKCR 154
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
++M G+V + Y + G+ +L ++ + + P +++Y +I AC
Sbjct: 155 EVFDEMPSNGVVRTVYSYTAIINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINAC 214
Query: 207 LDSG-NIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
G + + +F +M++ P+++T N ++ A GL +EA +F+ M E
Sbjct: 215 ARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESG---- 270
Query: 265 REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
++PDI T++ ++ R + + + + M
Sbjct: 271 --------IVPDINTYSYLVQTFGKLNRLEKVSELLREM 301
>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
EFFECT EMBRYO ARREST 40; Flags: Precursor
gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 754
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 120/274 (43%), Gaps = 22/274 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLER---- 48
PD Y S+ L + G +KE +V+D M +L K +E
Sbjct: 328 PDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATEL 387
Query: 49 ----WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ PD+ +N+++ + A + ++++ +G +P TY ++++ + +
Sbjct: 388 ARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCS 447
Query: 105 CGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK + ++++ S + + Y L++ + KT EA ++ME G+ ++
Sbjct: 448 KGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVT 507
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y L LC + + E+A MD++ KP +Y L+ G+I+ AA I M
Sbjct: 508 YNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMT 567
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
N C P++VT ++ + G E A KL + +
Sbjct: 568 SNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI 601
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 109/258 (42%), Gaps = 15/258 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD + V+ + +GA + +Q+ + G S + +++ G+
Sbjct: 220 LVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDAL 279
Query: 113 EFFRKV--QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
F +++ Q + P+ + LVN L + G A+ ++ M + G Y +
Sbjct: 280 NFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISG 339
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPN 229
LC G+ +EA+ +D++ P V+Y LI ++ A + + + P+
Sbjct: 340 LCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPD 399
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+ T N +++ AM+LF+EM KG PD +T+N ++D+ +
Sbjct: 400 VCTFNSLIQGLCLTRNHRVAMELFEEMR-----------SKGCE-PDEFTYNMLIDSLCS 447
Query: 290 EKRWDDLELVYKRMLHHG 307
+ + D+ + K+M G
Sbjct: 448 KGKLDEALNMLKQMELSG 465
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/340 (20%), Positives = 139/340 (40%), Gaps = 65/340 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y I + LG++G ++ +++ M+S + + T T +++ +
Sbjct: 81 PEPALYEEILLRLGRSGSFDDMKKILEDMKS-SRCEMGTSTF----------LILIESYA 129
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
++ + W++ + G KP Y ++ +++ LV K+ I
Sbjct: 130 QFELQDEILSVVDWMIDEF---GLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIK 186
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + VL+ L R + A+ +EDM G+V
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLV------------------------- 221
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
P ++T ++Q ++ G++ A I QM F CS + V+ N++V + +
Sbjct: 222 ----------PDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCK 271
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYK 301
G E+A+ QEM+ ++ G PD YTFNT+++ C A +E++
Sbjct: 272 EGRVEDALNFIQEMS----------NQDGF-FPDQYTFNTLVNGLCKAGHVKHAIEIM-D 319
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLAR 340
ML G + + +I + G+V E +E+ + + R
Sbjct: 320 VMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITR 359
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD YN++L R + A ++Q + G +P TYG ++ + G+ + +
Sbjct: 537 KPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASK 596
Query: 114 FFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDM-ERRGIVGSAALYYDLARCL 171
R +Q I AY ++ L+R+ KT EA++ +M E+ A Y + R L
Sbjct: 597 LLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGL 656
Query: 172 CSAG 175
C+ G
Sbjct: 657 CNGG 660
>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 718
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 110/255 (43%), Gaps = 16/255 (6%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D+ +N ++ A + Q A +L+++ G KP T+ +M+ + G N +
Sbjct: 157 DVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKM- 215
Query: 116 RKVQKSY--IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+K Y + ++ KVLVN +EG+ +EA+ V ++ G + L C
Sbjct: 216 KKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCR 275
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G +AL +D + + P V +Y LI G + A I QM CSPN VT
Sbjct: 276 IGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVT 335
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ A + E A L + + KGL +PD+ TFNT++ K
Sbjct: 336 YNTLISALCKENEIEAATDLARILV-----------SKGL-LPDVCTFNTLIQGLCLSKN 383
Query: 293 WDDLELVYKRMLHHG 307
D +++ M + G
Sbjct: 384 QDIAMEMFEEMKNKG 398
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 134/312 (42%), Gaps = 34/312 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDPR 52
PD V + S+ + G++ + D++D M SL K G E+
Sbjct: 261 PDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEI 320
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L+ P+ V YN +++A + + E A + + L +G P T+ +++ +
Sbjct: 321 LQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCL 380
Query: 105 CGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
++ E F +++ K P+ Y +L+++L E + EA+ +++ME G +A +
Sbjct: 381 SKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVV 440
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y L LC + + E+A D++ + V+Y LI + ++ A+ + +QM
Sbjct: 441 YNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMI 500
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
P+ T N ++ + G E+A + Q MA + PDI+T+ T
Sbjct: 501 MEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCE------------PDIFTYGT 548
Query: 283 MLDACAAEKRWD 294
++ R D
Sbjct: 549 LIGGLCRAGRVD 560
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 117/294 (39%), Gaps = 52/294 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+TV Y ++ L + I+ D+ R L K L PD+ +N ++
Sbjct: 331 PNTVTYNTLISALCKENEIEAATDL---ARILVSKG------------LLPDVCTFNTLI 375
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
K + A + +++K +G KP TY ++++ + + ++++ S
Sbjct: 376 QGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCA 435
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
NA+ Y L++ L + + ++A + ME G+ S+ Y L LC + EEA
Sbjct: 436 RNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQL 495
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
MD++ KP +Y L+ G+I+ A I M N C P++ T ++
Sbjct: 496 MDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCR 555
Query: 243 HG------------------------------LF-----EEAMKLFQEMAEDSN 261
G LF +E M+LF+EM E S+
Sbjct: 556 AGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSD 609
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/273 (21%), Positives = 124/273 (45%), Gaps = 21/273 (7%)
Query: 73 WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK--SYIPNALAYK 130
++ +L+QLK G P+ATT+ +++ + ++ + + ++ + P+ Y
Sbjct: 71 FDSITTLLKQLKSSGSIPNATTFATLIQ---SFTNFHEIENLLKILENELGFKPDTNFYN 127
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
+ +N L + K M GIV + + L + LC A + A++ ++++
Sbjct: 128 IALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANH 187
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEA 249
KP +++T L+Q ++ G++ A + QM + C V+ ++V + + G EEA
Sbjct: 188 GLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEA 247
Query: 250 MKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKRMLHHGL 308
++ E++E+ PD TFN++++ C D L++V M+ G
Sbjct: 248 LRFVLEVSEEG------------FSPDQVTFNSLVNGFCRIGNVNDALDIV-DFMIEKGF 294
Query: 309 HFNAKRHLRMILDASRAGKVE-LLEITWEHLAR 340
+ + +I + G+ E +EI + + R
Sbjct: 295 DPDVYTYNSLISGMCKLGEFEKAIEILQQMILR 327
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 1/124 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD YN++L R E A ++Q + G +P TYG ++ + G+ ++
Sbjct: 504 LKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVAS 563
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ R VQ K + AY ++ L+ +T E + +M + A + + R L
Sbjct: 564 KLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGL 623
Query: 172 CSAG 175
C+ G
Sbjct: 624 CNGG 627
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 79/182 (43%), Gaps = 18/182 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y S+ + G I++ D++ +M S EPDI Y ++
Sbjct: 506 PDKFTYNSLLTYFCRVGDIEKAGDIVQTMAS---------------NGCEPDIFTYGTLI 550
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
R + + A +L+ ++ +G + Y V++ + + FR++ +KS
Sbjct: 551 GGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDP 610
Query: 124 PNALAYKVLVNTLWREG-KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+AL +K++ L G EA+ +M +GI+ + LA LCS E+ L+
Sbjct: 611 PDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILPEFPSFGFLAEGLCSLSM-EDTLI 669
Query: 183 QM 184
++
Sbjct: 670 EL 671
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 11/208 (5%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
VVYN +++ + ++ E A + Q++ G S+ TY +++ + + + +
Sbjct: 439 VVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQ 498
Query: 118 -VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
+ + P+ Y L+ R G ++A V+ M G Y L LC AG+
Sbjct: 499 MIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGR 558
Query: 177 CEEALMQMDKICK-VANKPLVVS---YTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLV 231
+ A K+ + V K +V++ Y +IQA + +F +M P+ +
Sbjct: 559 VDVA----SKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDAL 614
Query: 232 TCNIMVKAYLE-HGLFEEAMKLFQEMAE 258
T I+ + G +EA+ EM E
Sbjct: 615 THKIVFRGLCNGGGPIQEAIDFTVEMLE 642
>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
Length = 814
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 118/259 (45%), Gaps = 15/259 (5%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG-QKPSATTYGLVMEVMLACGKYNL 110
R +PD+ + +++ + E AF V ++ G P + ++ +L +
Sbjct: 184 RCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKE 243
Query: 111 VYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
E F +++K + P+A+AY +++ L + G EA+ +++M + V + Y L
Sbjct: 244 AREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVN 303
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSP 228
LC AG E A + +P V YT LI SG ++ A +F++M + P
Sbjct: 304 SLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRP 363
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
+++T +M+ + G FE+A K F+EM +G P++ T+ T++ +
Sbjct: 364 DVITHTVMIDGLCKSGNFEQAAKSFEEMM------------RGGCKPNVVTYTTIIQGLS 411
Query: 289 AEKRWDDLELVYKRMLHHG 307
R + + K M+ HG
Sbjct: 412 KIGRVANAFRIMKGMIAHG 430
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 134/307 (43%), Gaps = 39/307 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLERWD-- 50
PD +AY ++ L +AGH +E V+D+M + L K GTLER +
Sbjct: 258 PDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEEL 317
Query: 51 ------PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
P+ V+Y ++++ + + + A + ++ + G +P T+ ++++ +
Sbjct: 318 FRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCK 377
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + + F ++ + PN + Y ++ L + G+ A ++ M G +
Sbjct: 378 SGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVT 437
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA-YIFNQM 222
Y L C G+ +EA +D++ K ++ P + Y+ L+ D G+++ +F Q
Sbjct: 438 YICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQS 497
Query: 223 K---NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
K P L C+I+V + G +EA ++FQ M + PD T
Sbjct: 498 KAAAETLDPGLC-CSIIV-GLCKTGRLDEACRIFQRMVSEGCK------------PDATT 543
Query: 280 FNTMLDA 286
+N +++
Sbjct: 544 YNILING 550
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 103/216 (47%), Gaps = 11/216 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQ--WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
+PD YN ++N R ++ E AF +L L++ G P A TY + + G+ +
Sbjct: 538 KPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRA 597
Query: 112 YEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ + + + + +AY L L +G+ D AVS ++M R+G AA Y +
Sbjct: 598 VKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIING 657
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNL 230
L K E+A D++ KP V +YT L+QA +GN+ A F++ ++ +
Sbjct: 658 LIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEA---FHRFESMLARGE 714
Query: 231 VTCNIMVKAYLEHGL-----FEEAMKLFQEMAEDSN 261
+ ++M+ L HG + A+KLF++M N
Sbjct: 715 LVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGN 750
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 119/279 (42%), Gaps = 15/279 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P+ +N ++ + R ++ + A + +K++ KP T+ ++++ + G +
Sbjct: 150 IAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAF 209
Query: 113 EFFRKVQK-SYIPNALA-YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
E F ++ ++P A + +V TL + + EA ME+ G A Y +
Sbjct: 210 EVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDG 269
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
L AG +EAL +D + A P V+Y L+ + +G ++ A +F M + PN
Sbjct: 270 LAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPN 329
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
V ++ + + G +EA LF EM E PD+ T M+D
Sbjct: 330 SVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYR------------PDVITHTVMIDGLCK 377
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
++ ++ M+ G N + +I S+ G+V
Sbjct: 378 SGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRV 416
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 124/293 (42%), Gaps = 28/293 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + + L +AG ++ F+V M ++ + PD ++ A++
Sbjct: 187 PDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMG--------------FVPPDRALHTAMV 232
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
++ K+ + A V Q+++ G P A Y +++ + G + + K+ +
Sbjct: 233 RTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACV 292
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y +LVN+L + G + A M G ++ +Y L +G+ +EA
Sbjct: 293 PTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSL 352
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLE 242
D++ + +P V+++T +I SGN + AA F + M+ C PN+VT +++ +
Sbjct: 353 FDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSK 412
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
G A ++ + M PD T+ +LD R D+
Sbjct: 413 IGRVANAFRIMKGMIAHG------------CFPDSVTYICLLDGFCKLGRLDE 453
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 90/226 (39%), Gaps = 17/226 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + + L + G + +++ S W+ D+V Y A+
Sbjct: 576 PDAVTYTPLCIGLCKIGEVDRAVKMLEEASS-----------RGWNA----DVVAYTALC 620
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ Q + A + Q++ +QG P A Y ++ ++ K +FF + + K
Sbjct: 621 TGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQK 680
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRG-IVGSAALYYDLARCLCSAGKCEEALM 182
P Y LV L G DEA E M RG +VGS +Y L C A K + AL
Sbjct: 681 PTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALK 740
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP 228
+ + N P V+ L + SG + A + +M SP
Sbjct: 741 LFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSP 786
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 123/275 (44%), Gaps = 21/275 (7%)
Query: 84 KQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKT 142
+Q G + TY +M +++A Y+ Y ++ K+ I PN ++ +L+ + R +
Sbjct: 111 EQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRA 170
Query: 143 DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS-YTG 201
D+AV+ E M+R+ + L CLC AG E+A ++ + P + +T
Sbjct: 171 DDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTA 230
Query: 202 LIQACLDSGNIQNAAYIFNQMKNFCS--PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
+++ L + ++ A +F QM+ C P+ + N M+ + G +EA+K+ M
Sbjct: 231 MVRTLLKAKRVKEAREVFGQMEK-CGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAK 289
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
+ +P T+ ++++ + E +++ M G N+ + +I
Sbjct: 290 A------------CVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLI 337
Query: 320 LDASRAGKVE----LLEITWEHLARADRITPPALI 350
+++G+++ L + E R D IT +I
Sbjct: 338 HGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMI 372
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/312 (20%), Positives = 122/312 (39%), Gaps = 38/312 (12%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD+V Y + + G + E ++D + P++ +Y+++
Sbjct: 432 FPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSS---------------PNLQLYSSL 476
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSAT-TYGLVMEVMLACGKYNLVYE----FFRKV 118
+N E L L +Q + + T GL +++ K + E F R V
Sbjct: 477 VNGLCDGGSVE---KTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMV 533
Query: 119 QKSYIPNALAYKVLVNTLW--REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
+ P+A Y +L+N L RE + + A + + D+E+ G + A Y L LC G+
Sbjct: 534 SEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGE 593
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNI 235
+ A+ +++ VV+YT L G + A +F +M + +P+
Sbjct: 594 VDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCC 653
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
++ ++ E+A K F EM P + T+ ++ A D+
Sbjct: 654 IINGLIKVKKLEDACKFFDEMIGKGQK------------PTVATYTALVQALCHAGNVDE 701
Query: 296 LELVYKRMLHHG 307
++ ML G
Sbjct: 702 AFHRFESMLARG 713
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 86/202 (42%), Gaps = 17/202 (8%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D VAY ++ L G + D SL ++ + G PD Y ++N
Sbjct: 612 DVVAYTALCTGLCYQGQV-------DRAVSLFQEMVRQGG--------APDAAAYCCIIN 656
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV--QKSYI 123
++ K+ E A ++ +GQKP+ TY +++ + G + + F + + +
Sbjct: 657 GLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELV 716
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y L++ + K D A+ EDM RG V +A L L +GK E+A
Sbjct: 717 GSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQEL 776
Query: 184 MDKICKVANKPLVVSYTGLIQA 205
+ ++ + P ++T ++
Sbjct: 777 LQEMAAGGSPPHAATFTAILDG 798
>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Cucumis sativus]
Length = 645
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 128/288 (44%), Gaps = 17/288 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++ YN +++ + + A + Q + +G P T+G++++ + G+
Sbjct: 250 PNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNL 309
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F + K S PN Y L++ + G EA++ ++ER + Y L R LCS
Sbjct: 310 FVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCS 369
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+ EEA +K+ K V+Y LI C G + A I +QM +N PN++T
Sbjct: 370 VSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVIT 429
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEK 291
+ ++ Y + + AM ++ EM S + PD+ T+ M+D C
Sbjct: 430 FSTLIDGYCKIRNLQAAMGIYSEMVIKS------------LSPDVVTYTAMIDGHCKYGS 477
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHL 338
+ L+L Y ML +G+ N ++ + GK+ + LE+ E +
Sbjct: 478 MKEALKL-YSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKI 524
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 121/271 (44%), Gaps = 14/271 (5%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ- 119
N +L V+ ++E + + +++ G PS T+G +++ G E F +++
Sbjct: 151 NVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRV 210
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K +P + Y +L+ L + K +EA S M G+ + Y L C ++
Sbjct: 211 KGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQ 270
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVK 238
AL + P VV++ LI G ++ A +F M F +PN+ N ++
Sbjct: 271 ALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLID 330
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
AY + G EAM LF E+ ++ V PD++T++ ++ + R ++
Sbjct: 331 AYCKVGDVSEAMALFLEL------------ERFEVSPDVFTYSILIRGLCSVSRTEEAGN 378
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++++M G+ N+ + +I + GK++
Sbjct: 379 IFEKMTKEGILANSVTYNSLIDGCCKEGKMD 409
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/262 (19%), Positives = 116/262 (44%), Gaps = 14/262 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P ++ + +++ C R+ A + +++ +G P+ Y +++ + + K
Sbjct: 178 LSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAE 237
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
R +++ + PN Y L++ + +A+ +DM G+V + L L
Sbjct: 238 SMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGL 297
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C G+ + A + K + P + Y LI A G++ A +F +++ F SP++
Sbjct: 298 CKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDV 357
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T +I+++ EEA +F++M ++ ++ + T+N+++D C E
Sbjct: 358 FTYSILIRGLCSVSRTEEAGNIFEKMTKEG------------ILANSVTYNSLIDGCCKE 405
Query: 291 KRWDDLELVYKRMLHHGLHFNA 312
+ D + +M +G+ N
Sbjct: 406 GKMDKALEICSQMTENGVEPNV 427
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 95/206 (46%), Gaps = 2/206 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+I VYN++++A + A + +L++ P TY +++ + + +
Sbjct: 320 PNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNI 379
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F K+ K I N++ Y L++ +EGK D+A+ M G+ + + L C
Sbjct: 380 FEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCK 439
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+ A+ ++ + P VV+YT +I G+++ A +++ M N +PN T
Sbjct: 440 IRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYT 499
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAE 258
+ ++ + G +A++LF E E
Sbjct: 500 ISCLLDGLCKDGKISDALELFTEKIE 525
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD+V Y A+++ + + A + + G P+ T +++ + GK +
Sbjct: 458 LSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDAL 517
Query: 113 EFF-RKVQ-------------KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
E F K++ K + N +AY L++ L ++G+ +AV DM R G+
Sbjct: 518 ELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQ 577
Query: 159 GSAALYYDLARCL 171
+Y + R L
Sbjct: 578 PDEVIYVVMLRGL 590
>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/333 (21%), Positives = 141/333 (42%), Gaps = 35/333 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T+ Y + L +A +E D ++ MRS T + P++ Y +L
Sbjct: 306 PNTILYNKMISGLCEASFFEEAMDFLNRMRS-------TSCI--------PNVQTYRILL 350
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
C+ +KQ +L + +G PS T + ++ ++ Y+ +K++K
Sbjct: 351 CGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECK 410
Query: 124 PNALAYKVLVNTLWREGKTDEAVS------AVEDMERRGIVGSAALYYDLARCLCSAGKC 177
P + Y +L+ ++ G+ V+ A +M G V + ARCLC GK
Sbjct: 411 PGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKF 470
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIM 236
E+A + ++ P +Y+ +I ++ ++NA ++F +MK P++ T I+
Sbjct: 471 EKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTIL 530
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ + + G+ ++A EM D P + T+ T++ A K+
Sbjct: 531 IDCFSKAGIIKQAHNWLDEMVRDGCE------------PTVVTYTTLIHAYLKAKKVSVA 578
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+++ M+ G N + +I ++G +E
Sbjct: 579 NELFELMIAKGCFPNVITYTALIDGYCKSGNIE 611
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/363 (21%), Positives = 155/363 (42%), Gaps = 48/363 (13%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKK----KFKTGTLERWDPRLEPD 56
+P+ + Y ++ ++G+I++ + MR +P K K E+ P+
Sbjct: 591 FPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEK------PN 644
Query: 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR 116
+V Y A+++ + + + A +L+ + G +P+ Y +++ K + E F
Sbjct: 645 VVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFH 704
Query: 117 K-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
K V++ Y PN Y L++ L+++ + D + + M + +Y ++ L
Sbjct: 705 KMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVA 764
Query: 176 KCEEA----LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
K +EA LM +K CK P VV+YT +I +G + +F +M + C+PN
Sbjct: 765 KTDEAYKLMLMMEEKGCK----PNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNF 820
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAED--SNHIN--------------------REYD 268
VT +++ G +EA L +EM + H++ E +
Sbjct: 821 VTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVE 880
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL--RMILDASRAG 326
K G P I + ++D R + ++K ++ + AK++L +I S A
Sbjct: 881 KNGSA-PTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSFSYAS 939
Query: 327 KVE 329
K++
Sbjct: 940 KID 942
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 72/351 (20%), Positives = 145/351 (41%), Gaps = 75/351 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L +A +K+ D++++M F G EP+ +VY+A++
Sbjct: 643 PNVVTYGALVDGLCKAHKVKDARDLLETM-------FVDGC--------EPNTIVYDALI 687
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + + A V ++ ++G P+ TY +++ + + +LV + K ++ S
Sbjct: 688 DGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCA 747
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y +++ L + KTDEA + ME +G + Y + AGK ++ L
Sbjct: 748 PNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLEL 807
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-------------------- 223
++ P V+YT LI C +G++ A + +MK
Sbjct: 808 FREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKR 867
Query: 224 --------------NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE--- 266
N +P ++ +++ +++ G E A++L +E+ S + +
Sbjct: 868 EFILSLGLLEEVEKNGSAPTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNL 927
Query: 267 ---------------------YDK-KGLVIPDIYTFNTMLDACAAEKRWDD 295
YD + VIPD+ TF +L +RW++
Sbjct: 928 YTSLIYSFSYASKIDHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEE 978
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 5/198 (2%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N ++ C R W A L +LK G KP+ TY +++V L K + R++ +
Sbjct: 210 NVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSE 269
Query: 121 SYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ + L + GK EA+S + E+ V + LY + LC A EE
Sbjct: 270 LGLSMDEFTLGFFAQALCKVGKWREALSLI---EKEDFVPNTILYNKMISGLCEASFFEE 326
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A+ ++++ + P V +Y L+ CL+ + I + M C P+ N +V
Sbjct: 327 AMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVH 386
Query: 239 AYLEHGLFEEAMKLFQEM 256
AY + F A KL ++M
Sbjct: 387 AYCKSDDFSYAYKLLKKM 404
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 41/222 (18%), Positives = 77/222 (34%), Gaps = 51/222 (22%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ G+AG + + ++ M S P+ V Y ++
Sbjct: 783 PNVVTYTAMIDGFGKAGKVDKCLELFREMGS---------------KGCAPNFVTYTVLI 827
Query: 65 NACVRRKQWEGAFWVLQQLKQ---------------------------------QGQKPS 91
N C + A+ +L+++KQ G P+
Sbjct: 828 NHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSAPT 887
Query: 92 ATTYGLVMEVMLACGKYNLVYEFFRKV---QKSYIPNALAYKVLVNTLWREGKTDEAVSA 148
Y ++++ + G+ + E ++V S Y L+ + K D A
Sbjct: 888 ILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSFSYASKIDHAFEL 947
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
DM R G++ + L L + EEAL D +C++
Sbjct: 948 FYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSLCQM 989
>gi|413950074|gb|AFW82723.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 643
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 133/325 (40%), Gaps = 34/325 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y +I L + + E +V+ +M P YNA++
Sbjct: 192 PDDVTYATIVSVLCKLDRLDEATEVLAAM--------------------PPVAASYNAIV 231
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYI 123
A R + + F V+ + +G +P+ TY +++ G+ + R V
Sbjct: 232 LALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCT 291
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + LV L+ +G+ +A+ M G S Y L R LCS G + A
Sbjct: 292 PNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSI 351
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + + P V +Y+ LI +G++ A I+N M ++ C PN+V MV + +
Sbjct: 352 LNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCK 411
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+F +A L +M ++ P+ TFNT++ + +R V+
Sbjct: 412 KLMFNQAKSLIDKMLLEN------------CPPNTVTFNTLIRSLCDCRRVGRALGVFHE 459
Query: 303 MLHHGLHFNAKRHLRMILDASRAGK 327
M HG N + + +I R G
Sbjct: 460 MRRHGCVPNGRTYNELIHGLFREGN 484
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 103/235 (43%), Gaps = 17/235 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P++ YN ++ A + + A +L ++ ++G P TY ++ V+ + +
Sbjct: 155 VHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEAT 214
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
E V + P A +Y +V L RE + E S V DM RG+ + Y + C
Sbjct: 215 E----VLAAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFC 270
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
AG+ A + ++ P VV++T L++ D G + +A ++ M +P+ V
Sbjct: 271 KAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTV 330
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+ NI+++ G + A + M + P++ T++T++D
Sbjct: 331 SYNILIRGLCSVGDLKGASSILNSMEQHG------------CFPNVRTYSTLIDG 373
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/274 (19%), Positives = 114/274 (41%), Gaps = 22/274 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR----------------SLPKKKFKTGTLER 48
P TV+Y + L G +K +++SM K G +
Sbjct: 327 PSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISI 386
Query: 49 WD----PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
W+ +P++VVY +++ ++ + A ++ ++ + P+ T+ ++ +
Sbjct: 387 WNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCD 446
Query: 105 CGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
C + F ++++ +PN Y L++ L+REG +A+ V +M+ GI S
Sbjct: 447 CRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVT 506
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + LC EA++ + K+ +P +++ +I A G ++ AA++ M
Sbjct: 507 YNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMN 566
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
C N++ I++ +AM +M
Sbjct: 567 VVNCHRNILVYTILMAELCNQDKLVDAMTYLLKM 600
>gi|302761054|ref|XP_002963949.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
gi|300167678|gb|EFJ34282.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
Length = 1365
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 131/290 (45%), Gaps = 17/290 (5%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
Y+A+L+A +E A L + G +P+AT V+E GK + EFF+++
Sbjct: 684 YSALLSAYAETGNFERATRALDNMVAAGLQPNATCANYVLEAFGRAGKAKEISEFFQRLP 743
Query: 120 KSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ I PN+ + V+ + R G +EA S M+ G S ++ L L S E
Sbjct: 744 EMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGFSPSIQVFKALL-ALYSRETVE 802
Query: 179 EALMQMDKICKVANKPLVVS-YTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIM 236
++ K K A L + Y +I G+ +NAA +F M+ CSP+ T N +
Sbjct: 803 IDAEELVKDIKKAGLELDIDIYNHMISLYSKLGSYRNAALVFKGMQEIGCSPDATTFNTL 862
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ Y + + +EA L +EM + N P+I T+ T++ A + ++D
Sbjct: 863 IMLYSRNQMVQEAQALLREMIKTGN------------APNISTYTTLISAYGRLQAYEDA 910
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
ELV+K + G +A + MI +AG+ +E E + + D P
Sbjct: 911 ELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEIIEQM-KVDGFEP 959
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 118/262 (45%), Gaps = 22/262 (8%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD + YN +++AC + A + +++++QG P TY ++ V G+
Sbjct: 192 LRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAAS 251
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD-LARC 170
FR +Q + + P+A+ Y +++ R+G+ +E V + M R S + Y+ +
Sbjct: 252 SIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEE-VERIRGMMRDARCSSDEITYNTMIHM 310
Query: 171 LCSAG---KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
AG K EE +QM + + P V++T LI +G + AA +F M K+
Sbjct: 311 YGKAGMHRKAEELYVQMKEEGRC---PDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQV 367
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
P L + M+ AY + +F +A + M + V PD+ ++ MLD
Sbjct: 368 RPTLQAFSAMICAYAKADMFTDAEHTYSCML------------RAGVRPDLLAYSVMLDV 415
Query: 287 CAAEKRWDDLELVYKRMLHHGL 308
+ ++YK M+ GL
Sbjct: 416 FFKAGMPEKCIILYKAMVGSGL 437
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/288 (20%), Positives = 121/288 (42%), Gaps = 15/288 (5%)
Query: 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG-KYNLVYEFF 115
+ VYN++++ R W +L +++ +G +P T+ +V++ G + L
Sbjct: 125 VQVYNSLMSVYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLL 184
Query: 116 RKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ V + + P+ + Y L++ + +A+ E+M+R+G Y + A
Sbjct: 185 QDVYAAGLRPDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRA 244
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
G+ E A + + P V+Y ++ A G I+ I M++ CS + +T
Sbjct: 245 GRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITY 304
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N M+ Y + G+ +A +L+ +M E+ PD TF ++D
Sbjct: 305 NTMIHMYGKAGMHRKAEELYVQMKEEGR------------CPDSVTFTVLIDTLGKAGFV 352
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
++ +++ ML + + MI ++A E T+ + RA
Sbjct: 353 NEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFTDAEHTYSCMLRA 400
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 81/187 (43%), Gaps = 2/187 (1%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD +N ++ R + + A +L+++ + G P+ +TY ++ Y
Sbjct: 854 PDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELV 913
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F+ + ++ P+A AY V++N + G+ + +E M+ G S + L
Sbjct: 914 FKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEIIEQMKVDGFEPSLTTIHMLMDSYGK 973
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVT 232
G +A ++ + ++ P + YT +I + L++ + +A +M + C P VT
Sbjct: 974 GGATGKAEEVLETLPEIGMSPDAIHYTSIINSHLNNKDYLSAVIWLRKMTDACVRPTHVT 1033
Query: 233 CNIMVKA 239
V A
Sbjct: 1034 ITCFVGA 1040
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 80/178 (44%), Gaps = 9/178 (5%)
Query: 29 VIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ 88
++ ++L ++ KTG P+I Y +++A R + +E A V + + + G
Sbjct: 871 MVQEAQALLREMIKTGN--------APNISTYTTLISAYGRLQAYEDAELVFKSIAETGC 922
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVS 147
KP AT Y +++ V G++ + E +++ + P+ +L+++ + G T +A
Sbjct: 923 KPDATAYNVMINVYRKAGEHRKIEEIIEQMKVDGFEPSLTTIHMLMDSYGKGGATGKAEE 982
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+E + G+ A Y + + A++ + K+ +P V+ T + A
Sbjct: 983 VLETLPEIGMSPDAIHYTSIINSHLNNKDYLSAVIWLRKMTDACVRPTHVTITCFVGA 1040
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 48/244 (19%), Positives = 99/244 (40%), Gaps = 37/244 (15%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+P+ N VL A R + + Q+L + G P++ T+ ++ G
Sbjct: 712 LQPNATCANYVLEAFGRAGKAKEISEFFQRLPEMGISPNSRTFVVIFHAFSRNGNLEEAR 771
Query: 113 EFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI-------------- 157
+R+++++ + P+ +K L+ RE +A V+D+++ G+
Sbjct: 772 SMYRQMKEAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDIDIYNHMISLY 831
Query: 158 --VGS----AALYYDLARCLCSAGK---------------CEEALMQMDKICKVANKPLV 196
+GS A ++ + CS +EA + ++ K N P +
Sbjct: 832 SKLGSYRNAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNI 891
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
+YT LI A ++A +F + + C P+ N+M+ Y + G + ++ ++
Sbjct: 892 STYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEIIEQ 951
Query: 256 MAED 259
M D
Sbjct: 952 MKVD 955
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 103/250 (41%), Gaps = 25/250 (10%)
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
FR +Q+ + N AY L++ G + A A+++M G+ +A +
Sbjct: 669 FRDLQQHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNATCANYVLEAFGR 728
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVT 232
AGK +E ++ ++ P ++ + A +GN++ A ++ QMK SP++
Sbjct: 729 AGKAKEISEFFQRLPEMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGFSPSIQV 788
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKG------LVI---- 274
++ Y + +A +L +++ + NH+ Y K G LV
Sbjct: 789 FKALLALYSRETVEIDAEELVKDIKKAGLELDIDIYNHMISLYSKLGSYRNAALVFKGMQ 848
Query: 275 -----PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
PD TFNT++ + + + + + + M+ G N + +I R E
Sbjct: 849 EIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYE 908
Query: 330 LLEITWEHLA 339
E+ ++ +A
Sbjct: 909 DAELVFKSIA 918
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 78/201 (38%), Gaps = 16/201 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ + G I+E+ + MR D R D + YN ++
Sbjct: 264 PDAVTYNSVLHAFARDGRIEEVERIRGMMR---------------DARCSSDEITYNTMI 308
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + A + Q+K++G+ P + T+ ++++ + G N F + KS +
Sbjct: 309 HMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVR 368
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P A+ ++ + +A M R G+ Y + AG E+ ++
Sbjct: 369 PTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAGMPEKCIIL 428
Query: 184 MDKICKVANKPLVVSYTGLIQ 204
+ KP + Y +++
Sbjct: 429 YKAMVGSGLKPELSVYAIMVR 449
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 94/244 (38%), Gaps = 35/244 (14%)
Query: 99 MEVMLA-CGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
+ VMLA G+++ E R Q + + KVLV + R G DEA++ DM G
Sbjct: 547 LAVMLAKAGRFSEAEEEMRTSQTYGQVQVSDFLKVLVASYDRAGMQDEALARFLDMTTEG 606
Query: 157 IVGSAALYYDLARCLCSAG----------KCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
+ A + C C G C A D VA ++ SY L
Sbjct: 607 LEMDAEVLQTAVMCYCRKGFAFVAHELLIDCLHAFDVKDSAMHVA---IIASYGKL---- 659
Query: 207 LDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
QNA +F ++ + N + ++ AY E G FE A + M
Sbjct: 660 ---KLWQNAEIVFRDLQQHGFAGNTSAYSALLSAYAETGNFERATRALDNMV-------- 708
Query: 266 EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRA 325
GL P+ N +L+A + ++ ++R+ G+ N++ + + SR
Sbjct: 709 ---AAGLQ-PNATCANYVLEAFGRAGKAKEISEFFQRLPEMGISPNSRTFVVIFHAFSRN 764
Query: 326 GKVE 329
G +E
Sbjct: 765 GNLE 768
>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
Length = 1096
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 139/309 (44%), Gaps = 19/309 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
P + NA+L + V+ + + L+++ ++ P T+ +++ V+ A G +
Sbjct: 154 FNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSS 213
Query: 113 EFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+K++KS Y P + Y +++ ++G+ A+ ++ M+ +G+ Y L L
Sbjct: 214 YLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDL 273
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C + + + + + + K P V+Y LI + G + A+ + N+M +F SPN
Sbjct: 274 CRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNH 333
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N ++ ++ G F+EA+K+F M + KGL P ++ +LD
Sbjct: 334 VTFNALIDGHISEGNFKEALKMFYMM-----------EAKGLT-PSEVSYGVLLDGLCKN 381
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR----ADRITP 346
+D Y RM +G+ + MI + G ++ + +++ D +T
Sbjct: 382 AEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTY 441
Query: 347 PALIKERFC 355
ALI FC
Sbjct: 442 SALING-FC 449
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/310 (20%), Positives = 130/310 (41%), Gaps = 35/310 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS-----------------LPKKKFKTGTLE 47
P V Y ++ + G K +++D M+S + G L
Sbjct: 226 PTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLL 285
Query: 48 RWDPR---LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
D R + P+ V YN ++N + A +L ++ G P+ T+ +++ ++
Sbjct: 286 LRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHIS 345
Query: 105 CGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + + F ++ K P+ ++Y VL++ L + + D A M+R G+
Sbjct: 346 EGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRIT 405
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + LC G +EA++ ++++ K P +V+Y+ LI G + A I ++
Sbjct: 406 YTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIY 465
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
SPN + + ++ G +EA+++++ M + + D +TFN
Sbjct: 466 RVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGH------------TRDHFTFNV 513
Query: 283 MLDA-CAAEK 291
++ + C A K
Sbjct: 514 LVTSLCKAGK 523
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 129/327 (39%), Gaps = 28/327 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ + G K + + + + ++ G L P+ ++Y+ ++
Sbjct: 436 PDIVTYSALINGFCKVGRFK-------TAKEIVCRIYRVG--------LSPNGIIYSTLI 480
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKSYI 123
C R + A + + + +G T+ +++ + GK EF R +
Sbjct: 481 YNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGIL 540
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN +++ L+N G+ +A S ++M + G + Y L + LC G EA
Sbjct: 541 PNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKF 600
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + V V Y L+ A SGN+ A +F +M + P+ T ++
Sbjct: 601 LKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCR 660
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G A+ LF + AE +G V+P+ + +D +W ++
Sbjct: 661 KGKTVIAI-LFAKEAE----------ARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQ 709
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
M + G + MI SR GK+E
Sbjct: 710 MDNLGHTPDIVTTNAMIDGYSRMGKIE 736
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 122/287 (42%), Gaps = 31/287 (10%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+E D +N +++ C + AF +++ + G T ++ V+ ++
Sbjct: 820 VEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESR 879
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI----VGSAALYYDL 167
++ K I P + Y L+N L R G A E+M I V +A+ L
Sbjct: 880 MVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRAL 939
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227
A+C GK +EA + + + K+ P + S+T L+ C +GN+ A + M N C
Sbjct: 940 AKC----GKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSN-CG 994
Query: 228 --PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
+LV+ N+++ G A +L++EM D + + T+ ++
Sbjct: 995 LKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDG------------FLANATTYKALIR 1042
Query: 286 ACAA-EKRWDDLELVYKRMLHHG------LHFNAKRHLRMILDASRA 325
A E + +++ K +L G L ++ R+L+M ++ +A
Sbjct: 1043 GLLARETAFSGADIILKDLLARGFITSMSLSQDSHRNLKMAMEKLKA 1089
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 117/290 (40%), Gaps = 39/290 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V ++ + G I++ D+ LP+ + G P++ YN +L
Sbjct: 717 PDIVTTNAMIDGYSRMGKIEKTNDL------LPEMGNQNGG---------PNLTTYNILL 761
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ +RK +F + + + G P T ++L + N++ E K+ K++I
Sbjct: 762 HGYSKRKDVSTSFLLYRSIILNGILPDKLT---CHSLVLGICESNML-EIGLKILKAFIC 817
Query: 125 NAL-----AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ + +L++ G+ + A V+ M GI + L + +E
Sbjct: 818 RGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQE 877
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMV 237
+ M + ++ K P Y GLI G+I+ A + +M C PN V + MV
Sbjct: 878 SRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPN-VAESAMV 936
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
+A + G +EA L + M K ++P I +F T++ C
Sbjct: 937 RALAKCGKADEATLLLRFML------------KMKLVPTIASFTTLMHLC 974
>gi|449511130|ref|XP_004163870.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Cucumis sativus]
Length = 847
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 135/346 (39%), Gaps = 67/346 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKK--------------------KFKTG 44
PD V Y S+ L + GH E +++ L K K K
Sbjct: 420 PDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQKAKEL 479
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E + +PD+V Y +VL+ R + + A ++QQ+ + KP+A TY + +
Sbjct: 480 VSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCR 539
Query: 105 CGKYNLVYEFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK + ++ + PNA+ Y V+V+ L REGK +EA V +M +G +
Sbjct: 540 NGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVE 599
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
L LC GK EA L++ C++ G
Sbjct: 600 INLLVHSLCRDGKPREA-------------------NQLLKECMNKG------------- 627
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
C+ N+V ++ + + E A+ L +M + H PD T+ +
Sbjct: 628 --CAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKH------------PDTVTYTAL 673
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+DA A R ++ + +ML GL + + +I R G+VE
Sbjct: 674 IDALAKTDRIEEATELTMKMLRQGLVPSPVTYRSVIHQYCRKGRVE 719
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 3/210 (1%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P++V YN ++ Q + A ++ Q+ +G P +Y VM ++ + N +
Sbjct: 347 IAPNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNEIR 406
Query: 113 EFFRKVQ--KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
E +K+Q +P+ + Y L+ L + G DEA+ +++ E+ Y +
Sbjct: 407 ELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHA 466
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
C GK ++A + ++ P VV+YT ++ G + A + QM K+ C PN
Sbjct: 467 YCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPN 526
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
VT + +G EA K+ E+
Sbjct: 527 AVTYTTFLNGLCRNGKSLEARKMMNMSEEE 556
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 110/272 (40%), Gaps = 17/272 (6%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKV 118
+ V+ + R + A VL +++ G +P+ + + +++ + F R V
Sbjct: 284 FGFVMVSYSRAGRLRDAMKVLTLMQKAGVEPNLSICNTAIHILVMGNELKKALRFAERMV 343
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
PN + Y L+ + D+A+ ++ M +G YY + LC +
Sbjct: 344 LIGIAPNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLN 403
Query: 179 EALMQMDKICKVANK--PLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNI 235
E + ++ K + +K P V+Y LIQ G+ A I + + + V +
Sbjct: 404 E-IRELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSA 462
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
+V AY + G ++A +L EM KG PD+ T+ ++LD + D
Sbjct: 463 IVHAYCKEGKIQKAKELVSEMFS-----------KG-CDPDVVTYTSVLDGFCRIGKLDQ 510
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
+ + ++M H NA + + R GK
Sbjct: 511 AKKMMQQMYKHHCKPNAVTYTTFLNGLCRNGK 542
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 63/319 (19%), Positives = 131/319 (41%), Gaps = 40/319 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y + L + G + E DV+ M + K F P+ V N ++
Sbjct: 560 PNAITYSVVVHGLRREGKLNEACDVVREM--IGKGFF-------------PNPVEINLLV 604
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
++ R + A +L++ +G + + V+ C K +L + Y+
Sbjct: 605 HSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHGF--CQKDDLEAAL-SLLDDMYLC 661
Query: 124 ---PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
P+ + Y L++ L + + +EA M R+G+V S Y + C G+ E+
Sbjct: 662 NKHPDTVTYTALIDALAKTDRIEEATELTMKMLRQGLVPSPVTYRSVIHQYCRKGRVEDL 721
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKA 239
L + K+ + +Y +I+ G ++ A + + ++ + TC++++++
Sbjct: 722 LKLLKKMLLKSR--FQTAYNLVIEKLCKFGYLEEANSLLGEVLRTASRTDAKTCHVLMES 779
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
YL G+ A K+ M NR +IPD+ + E + ++ + +
Sbjct: 780 YLNVGIPMSAYKVACRM------FNRN------LIPDLKLCEKVSKRLVVEGKLEEADRL 827
Query: 300 YKRMLHHGLHFNAK--RHL 316
R + G H +A+ +HL
Sbjct: 828 VLRFVERG-HVSAQEPKHL 845
>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
Length = 1315
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 139/331 (41%), Gaps = 35/331 (10%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLER 48
M P+ + Y S+ L + G +K+ F++++ M SL K G ER
Sbjct: 895 MGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTER 954
Query: 49 W---------DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM 99
+P++ Y A+++ + ++ A + +++K+QG P+ TY ++
Sbjct: 955 AFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLI 1014
Query: 100 EVMLACGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ G ++ YE + + + PN Y +V+ L + G+ +EA + + I
Sbjct: 1015 DGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIE 1074
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
Y L C +AL+ ++K+ KV +P + YT LI A ++++ +
Sbjct: 1075 ADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKL 1134
Query: 219 FNQ-MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI 277
F++ +K +P T M+ Y A+K FQ+M++ PD
Sbjct: 1135 FDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHG------------CAPDS 1182
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
++ ++ E R D+ +Y M+ GL
Sbjct: 1183 ISYGALISGLCKESRLDEARQLYDTMIDKGL 1213
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 93/215 (43%), Gaps = 16/215 (7%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P++ YK ++ R G EA + +M RG V A + C A+
Sbjct: 829 PDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWF 888
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
K+ K+ P +++Y+ +I G+++ A + +M KN PN+ T ++ +
Sbjct: 889 FHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCK 948
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G E A +LF ++ N+ P+++T+ M+ E++ E++++R
Sbjct: 949 KGWTERAFRLFLKLIRSDNY-----------KPNVHTYTAMISGYCKEEKLSRAEMLFER 997
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV----ELLEI 333
M GL N + +I +AG EL+E+
Sbjct: 998 MKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMEL 1032
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 83/362 (22%), Positives = 128/362 (35%), Gaps = 67/362 (18%)
Query: 55 PDIVVYNAVL-NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
PD Y ++ C E W+ + + ++G T L++ N
Sbjct: 829 PDSCTYKYIIVGYCRNGNVLEADRWICEMM-ERGFVVDNATLTLIITAFCEKSLVNRAVW 887
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
FF KV K + PN + Y +++ L + G +A +E+M + G + + L LC
Sbjct: 888 FFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLC 947
Query: 173 SAGKCEEALMQMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-------- 223
G E A K+ + N KP V +YT +I + A +F +MK
Sbjct: 948 KKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNT 1007
Query: 224 --------------NFCS--------------PNLVTCNIMVKAYLEHGLFEEAMKL--- 252
NF PN T N +V + G EEA KL
Sbjct: 1008 NTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNT 1067
Query: 253 -FQEMAED---------SNHINREYDKKGLVI----------PDIYTFNTMLDACAAEKR 292
FQ E S R + LV PDI+ + T++ A +
Sbjct: 1068 GFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNM 1127
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL----LEITWEHLARADRITPPA 348
D E ++ ++ GL + + MI R KV L + +H D I+ A
Sbjct: 1128 MKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGA 1187
Query: 349 LI 350
LI
Sbjct: 1188 LI 1189
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 80/220 (36%), Gaps = 16/220 (7%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+T Y SI L + G +E F +++ TG + ++E D V Y +
Sbjct: 1039 FPNTCTYNSIVDGLCKRGRAEEAFKLLN-----------TG----FQNQIEADGVTYTIL 1083
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SY 122
++ +R A L ++ + G +P Y ++ + F +V K
Sbjct: 1084 ISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGL 1143
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P Y ++ RE K AV + M G + Y L LC + +EA
Sbjct: 1144 APTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQ 1203
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
D + P V+ L + + +A I ++
Sbjct: 1204 LYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERL 1243
>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g16710, mitochondrial; Flags: Precursor
gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 507
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/334 (22%), Positives = 140/334 (41%), Gaps = 35/334 (10%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P+ V Y ++ L + H+ ++ + M + G+ P++V Y
Sbjct: 182 MGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGT-------NGS--------RPNVVTY 226
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQ 119
NA++ +W A W+L+ + ++ +P+ T+ +++ + GK E + +Q
Sbjct: 227 NALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQ 286
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
S P+ Y L+N L G DEA MER G + +Y L C + + E+
Sbjct: 287 MSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVED 346
Query: 180 AL---MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNI 235
+ +M + VAN ++YT LIQ G A +FNQM + P++ T N+
Sbjct: 347 GMKIFYEMSQKGVVAN---TITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNV 403
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
++ +G E+A+ +F+ M + IN I T+ ++ + +D
Sbjct: 404 LLDGLCCNGKVEKALMIFEYMRKREMDIN------------IVTYTIIIQGMCKLGKVED 451
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++ + G+ N + MI R G +
Sbjct: 452 AFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIH 485
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 123/302 (40%), Gaps = 25/302 (8%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
EPD+V + ++LN + E A + Q+ G KP+ TY ++ + N
Sbjct: 149 FEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAV 208
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F ++ PN + Y LV L G+ +A + DM +R I + + L
Sbjct: 209 ELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAF 268
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
GK EA + + +++ P V +Y LI G + A +F M +N C PN
Sbjct: 269 VKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNE 328
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAED---SNHINREYDKKGLVI------------- 274
V ++ + + E+ MK+F EM++ +N I +G +
Sbjct: 329 VIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQ 388
Query: 275 -------PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
PDI T+N +LD + + ++++ M + N + +I + GK
Sbjct: 389 MSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGK 448
Query: 328 VE 329
VE
Sbjct: 449 VE 450
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/303 (20%), Positives = 137/303 (45%), Gaps = 18/303 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P I+ + +L+ + +++ + +Q++ G P T +VM + + F
Sbjct: 81 PSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCF 140
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K + P+ + + L+N + ++A++ + + G + Y L RCLC
Sbjct: 141 LGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCK 200
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQMKNFCSPNLVT 232
A+ +++ ++P VV+Y L+ + G +AA++ + MK PN++T
Sbjct: 201 NRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVIT 260
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
++ A+++ G EA +L+ M + S V PD++T+ ++++
Sbjct: 261 FTALIDAFVKVGKLMEAKELYNVMIQMS------------VYPDVFTYGSLINGLCMYGL 308
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE-LLEITWEHLAR---ADRITPPA 348
D+ ++ M +G + N + +I ++ +VE ++I +E + A+ IT
Sbjct: 309 LDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTV 368
Query: 349 LIK 351
LI+
Sbjct: 369 LIQ 371
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 99/224 (44%), Gaps = 16/224 (7%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
MS YPD Y S+ L G ++D R + + G P+ V+Y
Sbjct: 287 MSVYPDVFTYGSLINGLCMYG-------LLDEARQMFYLMERNGCY--------PNEVIY 331
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ- 119
+++ + K+ E + ++ Q+G + TY ++++ G+ ++ E F ++
Sbjct: 332 TTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSS 391
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ P+ Y VL++ L GK ++A+ E M +R + + Y + + +C GK E+
Sbjct: 392 RRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVED 451
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
A + KP V++YT +I G I A +F +MK
Sbjct: 452 AFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMK 495
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R PDI YN +L+ + E A + + ++++ + TY ++++ M GK
Sbjct: 393 RAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDA 452
Query: 112 YEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
++ F + K PN + Y +++ R G EA S + M+ G + + ++Y
Sbjct: 453 FDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506
>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/333 (21%), Positives = 141/333 (42%), Gaps = 35/333 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T+ Y + L +A +E D ++ MRS T + P++ Y +L
Sbjct: 306 PNTILYNKMISGLCEASFFEEAMDFLNRMRS-------TSCI--------PNVQTYRILL 350
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
C+ +KQ +L + +G PS T + ++ ++ Y+ +K++K
Sbjct: 351 CGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECK 410
Query: 124 PNALAYKVLVNTLWREGKTDEAVS------AVEDMERRGIVGSAALYYDLARCLCSAGKC 177
P + Y +L+ ++ G+ V+ A +M G V + ARCLC GK
Sbjct: 411 PGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKF 470
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIM 236
E+A + ++ P +Y+ +I ++ ++NA ++F +MK P++ T I+
Sbjct: 471 EKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTIL 530
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ + + G+ ++A EM D P + T+ T++ A K+
Sbjct: 531 IDCFSKAGIIKQAHNWLDEMVRDGCE------------PTVVTYTTLIHAYLKAKKVSVA 578
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+++ M+ G N + +I ++G +E
Sbjct: 579 NELFELMIAKGCFPNVITYTALIDGYCKSGNIE 611
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 121/268 (45%), Gaps = 23/268 (8%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKK----KFKTGTLERWDPRLEPD 56
+P+ + Y ++ ++G+I++ + MR +P K K E+ P+
Sbjct: 591 FPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEK------PN 644
Query: 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR 116
+V Y A+++ + + + A +L+ + G +P+ Y +++ K + E F
Sbjct: 645 VVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFH 704
Query: 117 K-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
K V+ Y PN Y L++ L+++ + D + + M + +Y ++ L
Sbjct: 705 KMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVA 764
Query: 176 KCEEA----LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
K +EA LM +K CK P VV+YT +I +G + +F +M + C+PN
Sbjct: 765 KTDEAYKLMLMMEEKGCK----PNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNF 820
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
VT +++ G +EA L +EM +
Sbjct: 821 VTYTVLINHCCATGHLDEAYALLEEMKQ 848
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/352 (19%), Positives = 141/352 (40%), Gaps = 52/352 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT Y + L A ++ F + M+ TG + PD+ Y ++
Sbjct: 487 PDTSTYSEVIGFLCNASRVENAFFLFKEMKG-------TGVV--------PDVYTYTILI 531
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKSYI 123
+ + + A L ++ + G +P+ TY ++ L K ++ E F + K
Sbjct: 532 DCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCF 591
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L++ + G ++A M + +Y+ +
Sbjct: 592 PNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKN-------------- 637
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
VA KP VV+Y L+ + +++A + M + C PN + + ++ + +
Sbjct: 638 -----NVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCK 692
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+EA ++F +M E + P++YT+++++D +KR D + V +
Sbjct: 693 AAKLDEAQEVFHKMVEHGYN------------PNVYTYSSLIDRLFKDKRLDLVLKVLSK 740
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE----LLEITWEHLARADRITPPALI 350
ML + N + MI S+ K + L+ + E + + +T A+I
Sbjct: 741 MLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMI 792
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 118/255 (46%), Gaps = 24/255 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L +A +K+ D++++M F G EP+ +VY+A++
Sbjct: 643 PNVVTYGALVDGLCKAHKVKDARDLLETM-------FVDGC--------EPNTIVYDALI 687
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + + A V ++ + G P+ TY +++ + + +LV + K ++ S
Sbjct: 688 DGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCA 747
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y +++ L + KTDEA + ME +G + Y + AGK ++ L
Sbjct: 748 PNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLEL 807
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVT--CNIMVKAY- 240
++ P V+YT LI C +G++ A + +MK P V+ C + ++ Y
Sbjct: 808 FREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKV-IEGYK 866
Query: 241 ----LEHGLFEEAMK 251
L GL EE K
Sbjct: 867 REFILSLGLLEEVEK 881
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 5/198 (2%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N ++ C R W A L +LK G KP+ TY +++V L K + R++ +
Sbjct: 210 NVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSE 269
Query: 121 SYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ + L + GK EA+S + E+ V + LY + LC A EE
Sbjct: 270 LGLSMDEFTLGFFAQALCKVGKWREALSLI---EKEDFVPNTILYNKMISGLCEASFFEE 326
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A+ ++++ + P V +Y L+ CL+ + I + M C P+ N +V
Sbjct: 327 AMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVH 386
Query: 239 AYLEHGLFEEAMKLFQEM 256
AY + F A KL ++M
Sbjct: 387 AYCKSDDFSYAYKLLKKM 404
>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 452
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/359 (20%), Positives = 153/359 (42%), Gaps = 39/359 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y +I +L + + + FD+ M R+ PD++ YN ++
Sbjct: 117 PNVVMYSTIIYSLCKDKLVIDAFDLYSQM---------------LLKRISPDVITYNTLM 161
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKSYI 123
C+ + + A + Q+ + KP T+ ++++ + G+ +++S
Sbjct: 162 YGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVD 221
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ + + ++A M RRG+ Y + LC +EA+
Sbjct: 222 PDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNL 281
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NLVTCNIMVKAYLE 242
+ ++ + P V+Y+ LI SG I +A + N+M N P +++T N ++ A +
Sbjct: 282 LKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRGQPADVITYNSLLDALCK 341
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ ++A+ L ++ + + PDIYT+ ++D R D + VY+
Sbjct: 342 NHQVDKAITLLTKIKDQG------------IQPDIYTYTILVDGLCKNGRLKDAQEVYQI 389
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENK 361
+L G H LD+ + LL ++ + +T LI+ F N + +K
Sbjct: 390 LLIKGYH----------LDSLFDKALSLLSKMEDNGCTPNPVTFEILIRALFENDMNDK 438
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 105/227 (46%), Gaps = 23/227 (10%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PD++ YN++++ KQ A +V + ++G P +Y +++ + +
Sbjct: 220 VDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAV 279
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+++ KS PN + Y L++ L + G+ +A V +M RG Y L L
Sbjct: 280 NLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRGQPADVITYNSLLDAL 339
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--------- 222
C + ++A+ + KI +P + +YT L+ +G +++A ++ +
Sbjct: 340 CKNHQVDKAITLLTKIKDQGIQPDIYTYTILVDGLCKNGRLKDAQEVYQILLIKGYHLDS 399
Query: 223 -------------KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
N C+PN VT I+++A E+ + ++A++L +EM
Sbjct: 400 LFDKALSLLSKMEDNGCTPNPVTFEILIRALFENDMNDKAVELLREM 446
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/315 (19%), Positives = 133/315 (42%), Gaps = 26/315 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ G +KE + + M ++PDI +N ++
Sbjct: 152 PDVITYNTLMYGCLIVGRLKEAVGLFNQM---------------LLKNIKPDIYTFNILV 196
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN-LVYEFFRKVQKSYI 123
+ + + + A VL + +Q P TY +M+ + N + F ++
Sbjct: 197 DGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVT 256
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ +Y V++N L + DEAV+ +++M + + + Y L L +G+ +A
Sbjct: 257 PDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDL 316
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
++++ V++Y L+ A + + A + ++K+ P++ T I+V +
Sbjct: 317 VNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILVDGLCK 376
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVI---------PDIYTFNTMLDACAAEKRW 293
+G ++A +++Q + H++ +DK ++ P+ TF ++ A
Sbjct: 377 NGRLKDAQEVYQILLIKGYHLDSLFDKALSLLSKMEDNGCTPNPVTFEILIRALFENDMN 436
Query: 294 DDLELVYKRMLHHGL 308
D + + M+ GL
Sbjct: 437 DKAVELLREMIARGL 451
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 82/179 (45%), Gaps = 37/179 (20%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S P+TV Y S+ L ++G I + +D+++ M + R P D++ YN
Sbjct: 289 SMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHN------------RGQP---ADVITYN 333
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-K 120
++L+A + Q + A +L ++K QG +P TY ++++ + G+ E ++ + K
Sbjct: 334 SLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILVDGLCKNGRLKDAQEVYQILLIK 393
Query: 121 SY---------------------IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
Y PN + +++L+ L+ D+AV + +M RG++
Sbjct: 394 GYHLDSLFDKALSLLSKMEDNGCTPNPVTFEILIRALFENDMNDKAVELLREMIARGLL 452
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 90/209 (43%), Gaps = 20/209 (9%)
Query: 90 PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALA-YKVLVNTLWREG------KT 142
P+ +G + ++ ++ V +++ I L +LVN G K
Sbjct: 6 PTIFEFGKIFASLVKINHFHTVISLSHQMELRGIQTDLVNLNILVNCFCHLGQVCLNDKV 65
Query: 143 DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGL 202
E + +D+ +G + Y L LC AG+ A+ + I + +P VV Y+ +
Sbjct: 66 KETLHFHDDVIAKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTI 125
Query: 203 IQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSN 261
I + + +A +++QM SP+++T N ++ L G +EA+ LF +M +
Sbjct: 126 IYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKN- 184
Query: 262 HINREYDKKGLVIPDIYTFNTMLDACAAE 290
+ PDIYTFN ++D E
Sbjct: 185 -----------IKPDIYTFNILVDGLCKE 202
>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
Length = 722
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 131/341 (38%), Gaps = 42/341 (12%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M PD + Y S+ +AG +KE + +R L P ++ Y
Sbjct: 372 MGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRH---------------AGLAPTVLTY 416
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQ 119
N +++ R E A + +++ +QG P TY ++M+ + EFF + +
Sbjct: 417 NILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLS 476
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K P+ AY + G +A E M GI Y L LC G +
Sbjct: 477 KGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLND 536
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A K+ +P ++YT LI A + G ++ A F M + +P+ VT + +
Sbjct: 537 AKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIH 596
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHIN------------------------REYDKKGLVI 274
AY G A F++M E+ N E ++GLV
Sbjct: 597 AYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLV- 655
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
P+ YT+ ++D E W+D Y M +G+H + H
Sbjct: 656 PNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTH 696
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 117/243 (48%), Gaps = 19/243 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK--PSATTYGLVMEVMLACGKYNL 110
+EP IV YN +L++ ++ + + +L++++ +G P+ T+ +V+ + G
Sbjct: 233 IEPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEE 292
Query: 111 VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
E ++ S ++ Y L+ L +G +A +ME GI+ + Y +
Sbjct: 293 AAEMVEGMRLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHG 352
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPN 229
L +G+ E A ++ ++ + +P V++Y L+ +G+++ A +F +++ +P
Sbjct: 353 LLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPT 412
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML----D 285
++T NI++ Y G EEA +L +EM E +PD+ T+ ++ +
Sbjct: 413 VLTYNILIDGYCRLGDLEEARRLKEEMVEQG------------CLPDVCTYTILMKGSHN 460
Query: 286 ACA 288
AC+
Sbjct: 461 ACS 463
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 114/250 (45%), Gaps = 26/250 (10%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+ N VL +W+ V ++ Q G +PS TY +++ L G+ + V
Sbjct: 200 PDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLKEGRNDKVAML 259
Query: 115 FRKVQ---KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++++ +PN + + V++ L R+G +EA VE M R S+ Y L L
Sbjct: 260 LKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGM-RLSKKASSFTYNPLITGL 318
Query: 172 CSAG---KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CS 227
+ G K ++ ++M+ P VV+Y +I L SG ++ A F +M+
Sbjct: 319 LAKGFVKKADDLQLEME---NEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQ 375
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P+++T N ++ Y + G +EA+ LF ++ + + P + T+N ++D
Sbjct: 376 PDVITYNSLLNGYCKAGSLKEALLLFGDL------------RHAGLAPTVLTYNILIDGY 423
Query: 288 AAEKRWDDLE 297
R DLE
Sbjct: 424 C---RLGDLE 430
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 17/211 (8%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
DTV Y + L + G++ + D L K G L+PD + Y +++
Sbjct: 517 DTVTYNILIDGLCKTGNLNDAKD-------LQMKMVHNG--------LQPDCITYTCLIH 561
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
A R A + + G PSA TY + + G Y +FRK+ + + P
Sbjct: 562 AHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEP 621
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N + Y VL++ L R G+T A +M RG+V + Y L C G E+A+
Sbjct: 622 NEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFY 681
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNA 215
++ + P +++ L + D G++ +A
Sbjct: 682 FEMHQNGIHPDYLTHKALFKG-FDEGHMNHA 711
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 2/192 (1%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ D V YN +++ + A + ++ G +P TY ++ G
Sbjct: 514 ISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREAR 573
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+FF+ + P+A+ Y V ++ R G A M G+ + Y L L
Sbjct: 574 KFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHAL 633
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA-YIFNQMKNFCSPNL 230
C G+ + A ++ + P +YT LI GN ++A + F +N P+
Sbjct: 634 CRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDY 693
Query: 231 VTCNIMVKAYLE 242
+T + K + E
Sbjct: 694 LTHKALFKGFDE 705
>gi|297744686|emb|CBI37948.3| unnamed protein product [Vitis vinifera]
Length = 1550
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 141/299 (47%), Gaps = 36/299 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y ++ G+AG + + F MRS ++EPD VV+NA++
Sbjct: 995 PNVHTYGALIDGCGRAGQVAKAFGAYGIMRS---------------KKVEPDRVVFNALI 1039
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQ--KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY 122
AC + + AF VL +++ + Q P T G +++ G+ + E ++ + +
Sbjct: 1040 TACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACTNAGQVDRAREVYKMIDQYN 1099
Query: 123 IPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
I Y + V++ + G + A S DM R+G+V L AGK + A
Sbjct: 1100 IKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEMFLSALIDVAGHAGKLDAAF 1159
Query: 182 MQMDKICKVANKPL-VVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
++ + ++ PL +VSY+ L+ AC ++ N Q A ++ +K+ +P + T N ++ A
Sbjct: 1160 -EVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDIKSMKLNPTVSTMNALITA 1218
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
E E+AM++ +M K+ + P+ T++ +L A+EK+ DD+++
Sbjct: 1219 LCEGEQLEKAMEVLSDM------------KRAGLCPNTITYSILL--VASEKK-DDIDV 1262
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/247 (20%), Positives = 109/247 (44%), Gaps = 22/247 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P + +N +++ C + GAF VLQ +++ G K Y ++ GK + ++E
Sbjct: 925 PTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKADCKLYTTLISTCAKSGKVDAMFEV 984
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F ++ + + PN Y L++ R G+ +A A M + + ++ L
Sbjct: 985 FHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVEPDRVVFNALITACGQ 1044
Query: 174 AGKCEEALMQMDKICKVANKPLV---VSYTGLIQACLDSGNIQNAAYIFNQMKNF---CS 227
+G + A + ++ + +P+ ++ LI+AC ++G + A ++ + + +
Sbjct: 1045 SGAVDRAFDVLAEM-RAETQPIDPDHITVGALIKACTNAGQVDRAREVYKMIDQYNIKGT 1103
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P + T I V ++ + G +E A ++ +M +KG V+PD + ++D
Sbjct: 1104 PEVYT--IAVSSHSQIGDWEFAYSVYTDMT-----------RKG-VVPDEMFLSALIDVA 1149
Query: 288 AAEKRWD 294
+ D
Sbjct: 1150 GHAGKLD 1156
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 72/159 (45%), Gaps = 22/159 (13%)
Query: 134 NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANK 193
N L EG+ + + +EDME+ G++ +Y+ +C + ++A+ + + K+
Sbjct: 868 NRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHAKFFKIC---RSQKAVTEAFRFAKLIPT 924
Query: 194 PLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNL-VTCNI---MVKAYLEHGLFEEA 249
P + ++ L+ C S Q++A F ++ L C + ++ + G +
Sbjct: 925 PTLSTFNMLMSVCATS---QDSAGAFQVLQLVREAGLKADCKLYTTLISTCAKSGKVDAM 981
Query: 250 MKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
++F EM +N E V P+++T+ ++D C
Sbjct: 982 FEVFHEM------VNAE------VEPNVHTYGALIDGCG 1008
>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
Length = 762
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/321 (23%), Positives = 129/321 (40%), Gaps = 34/321 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM---RSLPKKKFKTGTL------------ERW 49
P+ Y S+ L G + + V++ M + + + T L RW
Sbjct: 327 PNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRW 386
Query: 50 DPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
++ D V Y ++N R + + A VLQ++ + TY ++++
Sbjct: 387 FDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCK 446
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK ++ VQ+ PN + Y L + L ++G A + +M +G+ +A
Sbjct: 447 RGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACT 506
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y L LC AG ++A+ M + KP V +YT LI A SG + A + +M
Sbjct: 507 YNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEML 566
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
N P +VT N+++ + G E KL + M E + H P+ T+N+
Sbjct: 567 DNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIH------------PNATTYNS 614
Query: 283 MLDACAAEKRWDDLELVYKRM 303
++ +YK M
Sbjct: 615 LMKQYCIGNNMKSTTEIYKGM 635
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 111/278 (39%), Gaps = 17/278 (6%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVY 112
+ ++ YN +L + E A Q + P TYG+++ A G+ N V
Sbjct: 259 DKNVCSYNILLKVLCGAGRVEDA---RQLFDEMASPPDVVTYGILIHGYCALGELENAVK 315
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
V + PNA Y +V L +G+ +A++ VEDM ++ A+Y + C
Sbjct: 316 LLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFC 375
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
+ G A D++ + V+YT LI +G ++ A + +M + V
Sbjct: 376 NKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEV 435
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T ++V Y + G EA ++ M + V P++ T+ + D +
Sbjct: 436 TYTVLVDGYCKRGKMAEAFQVHNTMVQRG------------VAPNVVTYTALSDGLCKQG 483
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ M + GL NA + +I +AG ++
Sbjct: 484 DVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLD 521
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/280 (20%), Positives = 114/280 (40%), Gaps = 31/280 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y +++ L + G ++ +++ M + LE + YN+++
Sbjct: 467 PNVVTYTALSDGLCKQGDVQAANELLHEMS---------------NKGLELNACTYNSLI 511
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + + A + + G KP TY +++ + G+ + ++ +++ + I
Sbjct: 512 NGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIK 571
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y VL+N G+ + +E M + I +A Y L + C +
Sbjct: 572 PTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEI 631
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
+C +P +Y LI+ + +++ A Y N+M K F + + +++
Sbjct: 632 YKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGF-RLTASSYSALIRLLN 690
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI-PDIYTF 280
+ F EA KLF +M K+G PD+Y F
Sbjct: 691 KKKKFVEARKLFHDMR-----------KEGFTAEPDVYNF 719
>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
Length = 836
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 128/295 (43%), Gaps = 35/295 (11%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D + Y ++ + G +KE F++ + M K G ++PDI +N +L+
Sbjct: 535 DRITYNTLISGCCKEGKVKEGFELKEEM-------VKKG--------IQPDIYTFNLLLH 579
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY----NLVYEFFRKVQKS 121
+ + A + + K+ G P+ TYG++++ K NL+ E V K
Sbjct: 580 GLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNEL---VSKK 636
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
N++ Y L+ G + A +DM+ RG++ S A Y L LC+ G ++A
Sbjct: 637 LELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAK 696
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAY 240
+D++ K P VV YT +I G + + +M + PN T IM+ +
Sbjct: 697 HLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGF 756
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
+ G +EA KL EM E KG ++PD T+N + E + ++
Sbjct: 757 CKLGKTKEAAKLLNEMTE-----------KG-ILPDAVTYNAFTNGLCKEGKVEE 799
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 131/303 (43%), Gaps = 20/303 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+ +++ ++NA + + + A + ++++ G P+ TY ++ + G+ + Y F
Sbjct: 254 PDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRF 313
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K + P+ + Y V +N L + K DEA +++M G V + +Y L C
Sbjct: 314 KEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCK 373
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NLVT 232
G EAL D + P V+ LIQ S I A + +M P N +
Sbjct: 374 MGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGS 433
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEK 291
++++ F A+ +EM + + P+ T++ C A K
Sbjct: 434 FSMVINWLCLKFRFVTALHFIREMLLRN------------LRPNDGLLTTLVSGLCKAGK 481
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARA---DRITPP 347
+ + +EL + R+L G N +I +AG + E L++ + L R DRIT
Sbjct: 482 QGEAVEL-WCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYN 540
Query: 348 ALI 350
LI
Sbjct: 541 TLI 543
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 99/235 (42%), Gaps = 14/235 (5%)
Query: 79 VLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLW 137
V L ++G PS T ++ ++ + YE + + IP+ + ++N
Sbjct: 208 VFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFC 267
Query: 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV 197
+ + D+A+ ME+ G+ + Y ++ LC +G+ +EA +K+ K P ++
Sbjct: 268 KGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLI 327
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+Y+ I + I A + +M PN V N ++ Y + G EA+K+ +M
Sbjct: 328 TYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDM 387
Query: 257 AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
KG + P+ T N+++ + E V + M+ GL N
Sbjct: 388 LS-----------KG-ISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPIN 430
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 135/317 (42%), Gaps = 38/317 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ + G+I E + D M S + P+ V N+++
Sbjct: 359 PNEVVYNTLIDGYCKMGNISEALKIRDDMLS---------------KGISPNSVTLNSLI 403
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV--YEFFRK-VQKS 121
+ Q A VL+++ +G + ++ +V+ + C K+ V F R+ + ++
Sbjct: 404 QGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWL--CLKFRFVTALHFIREMLLRN 461
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
PN LV+ L + GK EAV + +G V + L LC AG +E L
Sbjct: 462 LRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETL 521
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
+ + + ++Y LI C G ++ + +M K P++ T N+++
Sbjct: 522 KLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGL 581
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEK--RWDDL- 296
+EA +L+ E KK +P++YT+ M+D C A K ++L
Sbjct: 582 CNADKIDEASRLWHEC------------KKNGYVPNVYTYGVMIDGYCKANKVEEGENLL 629
Query: 297 -ELVYKRMLHHGLHFNA 312
ELV K++ + + +N+
Sbjct: 630 NELVSKKLELNSVVYNS 646
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/352 (20%), Positives = 145/352 (41%), Gaps = 44/352 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y +I L ++G + E + +FK ++ ++ P ++ Y+ +
Sbjct: 289 PNVVTYNNIIHGLCKSGRLDEAY------------RFKEKMVKE---KVSPSLITYSVFI 333
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N ++ ++ + A VL+++ + G P+ Y +++ G + + + K
Sbjct: 334 NGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGIS 393
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN++ L+ + + +A + +E+M RG+ + + + LC + AL
Sbjct: 394 PNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHF 453
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
+ ++ +P T L+ +G A ++ ++ K F PN+VT N ++
Sbjct: 454 IREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFV-PNIVTSNALIHGLC 512
Query: 242 EHGLFEEAMKLFQEMAE------------------------DSNHINREYDKKGLVIPDI 277
+ G +E +KL ++M E + + E KKG + PDI
Sbjct: 513 KAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKG-IQPDI 571
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
YTFN +L + D+ ++ +G N + MI +A KVE
Sbjct: 572 YTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVE 623
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 86/202 (42%), Gaps = 16/202 (7%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
++V Y S+ G++ F + D M+S G L Y+++++
Sbjct: 640 NSVVYNSLIRAYCINGNMNAAFRLRDDMKS-------RGVL--------LSCATYSSLMH 684
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ A +L +++++G P+ Y ++ G+ N V +++ I P
Sbjct: 685 GLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHP 744
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N Y ++++ + GKT EA + +M +GI+ A Y LC GK EEA
Sbjct: 745 NKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVC 804
Query: 185 DKICKVANKPLVVSYTGLIQAC 206
D++ A ++YT LI C
Sbjct: 805 DEMSSGAVCLDEITYTTLIDGC 826
>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 123/287 (42%), Gaps = 39/287 (13%)
Query: 5 PDTVAYRS-IAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
P + Y I T+ Q G I E ++D M S L PD YN V
Sbjct: 214 PTVITYTILIEATITQGG-IDEAMKLLDEMLS---------------RGLRPDRYTYNVV 257
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
+N + + AF L ++ + G +TY +++ +L GK+ E+ K+ +
Sbjct: 258 VNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKW----EYGEKLMSDML 313
Query: 124 -----PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
PN + Y L+ L R+GK DEA + ++ M+ + + Y L LC GK +
Sbjct: 314 VKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVD 373
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
A+ +D + + P ++SY ++ + +GN A IF ++ C PN + N +
Sbjct: 374 LAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLF 433
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
A G A+ + EM SN I+ PD T+N+++
Sbjct: 434 GALWSSGDKIRALGMILEML--SNGID----------PDEITYNSLI 468
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 116/271 (42%), Gaps = 13/271 (4%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
+ LN + +++ + + LQ + +G KP +++ K + ++
Sbjct: 80 FMKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILE 139
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K P+ AY +++ + + D A ++ M++RG Y L C G+ +
Sbjct: 140 KHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDL 199
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
AL MD++ K KP V++YT LI+A + G I A + ++M P+ T N++V
Sbjct: 200 ALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVN 259
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G+ + A + ++++ + + T+N +L E +W+ E
Sbjct: 260 GMCKEGMLDRAFEFLSRISKNG------------CVAGVSTYNILLRDLLNEGKWEYGEK 307
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ ML G N + +I R GK++
Sbjct: 308 LMSDMLVKGCEPNPITYSTLITALCRDGKID 338
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 113/252 (44%), Gaps = 14/252 (5%)
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+E + +PD+ YNAV++ + + + A VL ++K++G +P TY +++
Sbjct: 134 VMEILEKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCG 193
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ +L ++ K P + Y +L+ +G DEA+ +++M RG+
Sbjct: 194 RGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYT 253
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y + +C G + A + +I K V +Y L++ L+ G + + + M
Sbjct: 254 YNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDML 313
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
C PN +T + ++ A G +EA + + M E + + PD Y+++
Sbjct: 314 VKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKA------------LAPDGYSYDP 361
Query: 283 MLDACAAEKRWD 294
++ A E + D
Sbjct: 362 LISALCREGKVD 373
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 112/276 (40%), Gaps = 50/276 (18%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP+ + Y+ ++ A R + + A VL+ +K++ P +Y ++ + GK +L E
Sbjct: 318 EPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIE 377
Query: 114 FFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F + ++P+ L+Y ++ +L + G DEA++ E
Sbjct: 378 FLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFE---------------------- 415
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN-IQNAAYIFNQMKNFCSPNLV 231
K+ +V P SY L A SG+ I+ I + N P+ +
Sbjct: 416 -------------KLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEI 462
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT-MLDACAAE 290
T N ++ GL ++A++L +M E P + ++NT +L C +
Sbjct: 463 TYNSLISCLCRDGLVDQAIELLVDMFESEK-----------CQPTVISYNTVLLGLCKVQ 511
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+ D +E V M++ G N + +I AG
Sbjct: 512 RIIDAIE-VLAAMVNEGCLPNETTYTLLIQGIGFAG 546
>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 116/265 (43%), Gaps = 27/265 (10%)
Query: 53 LEPDIVVYNAVLNACVRR-KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
L P +V YN +L+ + + W+ +L +++ +G T V+ ACG+ L+
Sbjct: 253 LSPSLVTYNVMLDVYGKMGRSWDKILELLDEMRSRGLDFDEFTCSTVLS---ACGREGLI 309
Query: 112 ---YEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
EFF ++ + Y P + Y L++ + G EA+S + +ME A Y ++
Sbjct: 310 DEAREFFSGLKSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEENNCPPDAVTYNEV 369
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-C 226
AG EE + +D + P V+YT +I A G+I A +F+QM C
Sbjct: 370 VAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGC 429
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS---NHINREYDKKGLVIPDIYTFNTM 283
PN+ T N ++ + L EE MK+ M + NHI T+NTM
Sbjct: 430 VPNVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHI---------------TWNTM 474
Query: 284 LDACAAEKRWDDLELVYKRMLHHGL 308
L C + + V++ M + G
Sbjct: 475 LAMCGKKGMHKYVNQVFREMKNCGF 499
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 94/425 (22%), Positives = 160/425 (37%), Gaps = 80/425 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P TV Y ++ G+AG E V+ M + PD V YN V+
Sbjct: 326 PGTVTYNALLHVFGKAGIFSEALSVLSEME---------------ENNCPPDAVTYNEVV 370
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
A VR E V+ + +G P+A TY ++ G + E F ++ + +
Sbjct: 371 AAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCV 430
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y ++ L ++ ++E + + M+ G CS
Sbjct: 431 PNVATYNAVLGMLGKKSLSEEMMKILGHMKLNG---------------CS---------- 465
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--PNLVTCNIMVKAYL 241
P +++ ++ C G + +F +MKN C P+ T N ++ AY
Sbjct: 466 ----------PNHITWNTMLAMCGKKGMHKYVNQVFREMKN-CGFEPDRDTFNTLISAYG 514
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G +A K+ +EM K P I T+N +L+A A W E V
Sbjct: 515 RCGSNNDAAKMHEEMI------------KAGFSPCINTYNALLNALARRGDWKAAESVIL 562
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPP-----ALIKERF-C 355
M + G + + M+ ++ G V+ +E+ + + D I P L+ F C
Sbjct: 563 DMRNKGFRPSETSYSLMVHSYAKGGNVKGIEMIEKSIYDGD-IFPSWMLLRTLVLANFKC 621
Query: 356 NRLENKDYGSAISCLVSHPVSGSPEFSR-NAWLKFFKENSQHFGQDTLIQLLHEAS--SS 412
L + A L H P+ N+ L F +N+ + +++L+H+A
Sbjct: 622 RSLTGME--RAFQALQKHGY--KPDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQPD 677
Query: 413 LTTRN 417
L T N
Sbjct: 678 LVTHN 682
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 106/256 (41%), Gaps = 14/256 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
P I YNA+LNA RR W+ A V+ ++ +G +PS T+Y L++ G +
Sbjct: 534 FSPCINTYNALLNALARRGDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGNVKGIE 593
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ + I P+ + + LV ++ A + +++ G L +
Sbjct: 594 MIEKSIYDGDIFPSWMLLRTLVLANFKCRSLTGMERAFQALQKHGYKPDLVLCNSMLSIF 653
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNL 230
+ A + I +P +V++ L+ G+ A + ++ P+L
Sbjct: 654 AKNNMYDRAHEMLRLIHDAGLQPDLVTHNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDL 713
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
V+ N ++K + GL +E +++ EM V P I+T+NT + AA+
Sbjct: 714 VSYNTVIKGFCRKGLMQEGIRILSEMTSIG------------VGPCIFTYNTFISGYAAQ 761
Query: 291 KRWDDLELVYKRMLHH 306
+ ++ V M+ H
Sbjct: 762 GMFTEINDVISYMIVH 777
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 116/306 (37%), Gaps = 34/306 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSL---PKKKFKTGTLERWDPR--------- 52
P+ V Y +I G+ G I + ++ D M L P L +
Sbjct: 396 PNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKI 455
Query: 53 --------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
P+ + +N +L C ++ + V +++K G +P T+ ++
Sbjct: 456 LGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGR 515
Query: 105 CGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
CG N + ++ K+ + P Y L+N L R G A S + DM +G S
Sbjct: 516 CGSNNDAAKMHEEMIKAGFSPCINTYNALLNALARRGDWKAAESVILDMRNKGFRPSETS 575
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y + G + M I P + L+ A ++ F +
Sbjct: 576 YSLMVHSYAKGGNVKGIEMIEKSIYDGDIFPSWMLLRTLVLANFKCRSLTGMERAFQALQ 635
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
K+ P+LV CN M+ + ++ +++ A ++ + + D+ + PD+ T N+
Sbjct: 636 KHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLR-LIHDAG-----------LQPDLVTHNS 683
Query: 283 MLDACA 288
++D A
Sbjct: 684 LMDMYA 689
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/284 (20%), Positives = 116/284 (40%), Gaps = 22/284 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAF----WVLQQLKQQGQKPSATTYGLVMEVMLACGKY 108
L+ D++ ++L A WE A W + L +K L++ ++ ++
Sbjct: 147 LQVDLI---SLLKALDYSGNWEKALLLFEWSVLNLGIANEKIDRHAIELMVRILGRESQH 203
Query: 109 NLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ + F + Y+ + AY +++ R GK A+ E M G+ S Y +
Sbjct: 204 TVASKLFDVIPLDDYVLDVRAYTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYNVM 263
Query: 168 ARCLCSAGKCEEALMQM-DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-F 225
G+ + ++++ D++ + + ++ AC G I A F+ +K+
Sbjct: 264 LDVYGKMGRSWDKILELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEG 323
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
P VT N ++ + + G+F EA+ + EM E++ PD T+N ++
Sbjct: 324 YKPGTVTYNALLHVFGKAGIFSEALSVLSEMEENN------------CPPDAVTYNEVVA 371
Query: 286 ACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
A ++ +V M G+ NA + +I R G ++
Sbjct: 372 AYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDID 415
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/212 (16%), Positives = 84/212 (39%), Gaps = 2/212 (0%)
Query: 49 WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY 108
+D + P ++ ++ A + + G Q L++ G KP ++ + Y
Sbjct: 600 YDGDIFPSWMLLRTLVLANFKCRSLTGMERAFQALQKHGYKPDLVLCNSMLSIFAKNNMY 659
Query: 109 NLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ +E R + + + P+ + + L++ R G +A + ++ G Y +
Sbjct: 660 DRAHEMLRLIHDAGLQPDLVTHNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNTV 719
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
+ C G +E + + ++ + P + +Y I G + + M + C
Sbjct: 720 IKGFCRKGLMQEGIRILSEMTSIGVGPCIFTYNTFISGYAAQGMFTEINDVISYMIVHNC 779
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
PN +T I+ Y + ++EA+ ++ +
Sbjct: 780 RPNELTYKIVADGYCKARRYDEAIDFVSKIKD 811
>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
Length = 603
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/316 (20%), Positives = 133/316 (42%), Gaps = 62/316 (19%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP++ +N +L R +E +L+++K +G + T+G+++ + A +
Sbjct: 125 EPNVSSFNILLRGFAARDDFEVVNALLREMKSRGITSNGATHGVILSALCARRDLDKAVS 184
Query: 114 FFRKV------------------------------------QKSYIPNALAYKVLVNTLW 137
+F V +K Y P+ +AY L++ L
Sbjct: 185 YFNSVSPNKCEPTLFTYTVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLS 244
Query: 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV 197
+ G+ DEA V+ M RG +A Y + LC G+ +EA+ + ++ + +P V
Sbjct: 245 KAGRVDEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVD 304
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+Y+ ++ + G ++ A + +M + C+P+ ++ + ++A G EEA K+F+ M
Sbjct: 305 TYSFIVTGYIGMGKVEKAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETM 364
Query: 257 AED------------------------SNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
E + H+ R DK V P+ Y + ++D R
Sbjct: 365 VEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAA-VKPNRYIYTMIMDGFVKSSR 423
Query: 293 WDDLELVYKRMLHHGL 308
++ +Y+R+L G+
Sbjct: 424 LEEALELYQRILKDGI 439
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/328 (20%), Positives = 135/328 (41%), Gaps = 36/328 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKF----------KTGTLERWDPR 52
PD +AY S+ L +AG + E ++D M R P K G ++
Sbjct: 231 PDIIAYSSLIDGLSKAGRVDEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKT 290
Query: 53 LEP--------DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
++ + Y+ ++ + + E AF V++++ + P +Y + +E + +
Sbjct: 291 IQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRDCAPDTISYTMFIEALYS 350
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ + F V+K P+ Y ++++ +EG A + M++ + + +
Sbjct: 351 IGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYI 410
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y + + + EEAL +I K P V+Y +I A + A + +M
Sbjct: 411 YTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQ 470
Query: 223 --KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
K P++VT ++++ + G+ E A L EM ++ VIPD +T+
Sbjct: 471 RRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNG------------VIPDCFTY 518
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGL 308
+++ A + + + ML G+
Sbjct: 519 TSLIQTLAGAGKVSRAMELLEEMLKAGI 546
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/320 (22%), Positives = 130/320 (40%), Gaps = 39/320 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLERWDPR 52
P VAY SI L + G I+E I MR + G +E+
Sbjct: 266 PTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAV 325
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+E PD + Y + A + E A V + + ++G KP TYG++++
Sbjct: 326 MEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCK 385
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G R + K+ + PN Y ++++ + + +EA+ + + + GI+ S
Sbjct: 386 EGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVT 445
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVAN--KPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y + LC K +EAL + ++ + +P +V+Y+ +I G + A + +
Sbjct: 446 YNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAE 505
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
M N P+ T +++ G AM+L +EM K + PD +T+
Sbjct: 506 MIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEML------------KAGIFPDDHTY 553
Query: 281 NTMLDACA---AEKRWDDLE 297
T++ + WD L+
Sbjct: 554 GTLVQILCRSDVDAAWDLLQ 573
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 116/249 (46%), Gaps = 15/249 (6%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PDI+ Y+++++ + + + A ++ + +G P+A Y ++ + CG+ +
Sbjct: 230 KPDIIAYSSLIDGLSKAGRVDEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVK 289
Query: 114 FFRKVQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+++++ + + Y +V GK ++A + +E+M R Y L
Sbjct: 290 TIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRDCAPDTISYTMFIEALY 349
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
S G+ EEA + + + KP + +Y +I G++ A ++ M K PN
Sbjct: 350 SIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRY 409
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
+++ +++ EEA++L+Q + +D ++P T+NT+++A K
Sbjct: 410 IYTMIMDGFVKSSRLEEALELYQRILKDG------------ILPSTVTYNTVINALCKLK 457
Query: 292 RWDD-LELV 299
+ D+ LEL+
Sbjct: 458 KMDEALELL 466
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 90/193 (46%), Gaps = 7/193 (3%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P+ +Y +++ V+ + E A + Q++ + G PS TY V+ + K +
Sbjct: 404 VKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEAL 463
Query: 113 EFFRKVQK---SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
E R++Q+ P+ + Y ++++ L + G + A + +M G++ Y L +
Sbjct: 464 ELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQ 523
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ--MKNFCS 227
L AGK A+ ++++ K P +Y L+Q S +AA+ Q M+N +
Sbjct: 524 TLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCRSD--VDAAWDLLQEMMRNGHT 581
Query: 228 PNLVTCNIMVKAY 240
PN T + K +
Sbjct: 582 PNEFTFKAVEKGF 594
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 15/153 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P TV Y ++ L + +K++ + ++ +R + ++K LEP IV Y+ ++
Sbjct: 441 PSTVTYNTVINALCK---LKKMDEALELLREMQRRK----------EELEPSIVTYSMII 487
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + E AF +L ++ G P TY +++ + GK + E ++ K+ I
Sbjct: 488 HGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIF 547
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
P+ Y LV L R D A +++M R G
Sbjct: 548 PDDHTYGTLVQILCR-SDVDAAWDLLQEMMRNG 579
>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
Length = 1107
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 129/287 (44%), Gaps = 15/287 (5%)
Query: 29 VIDSMRSLPKKKFKTGTLERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG 87
+ID M + G E R L PD V YN++++ + + + +++K
Sbjct: 136 MIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 195
Query: 88 QKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAV 146
+P TY ++ GK + EF+R+++ + + PN ++Y LV+ +EG +A+
Sbjct: 196 CEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAI 255
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
DM R G+V + Y L C G +A +++ +V + VV+YT LI
Sbjct: 256 KFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGL 315
Query: 207 LDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
D+ ++ A +F +M PNL + N ++ +++ + A++L E+
Sbjct: 316 CDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNEL--------- 366
Query: 266 EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
K + PD+ + T + + ++ + ++V M G+ N+
Sbjct: 367 ---KGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANS 410
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 124/282 (43%), Gaps = 17/282 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P V++A+ + + E A ++K+ P + ++ GK + V F
Sbjct: 58 PGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRF 117
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F+ + P Y ++++ + +EG + A E+M+ RG+V Y +
Sbjct: 118 FKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGK 177
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVT 232
G+ ++ + +++ + +P V++Y LI G + + +MK N PN+V+
Sbjct: 178 VGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVS 237
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+ +V A+ + G+ ++A+K + +M + GLV P+ YT+ +++DA
Sbjct: 238 YSTLVDAFCKEGMMQQAIKFYVDMR-----------RVGLV-PNEYTYTSLIDANCKIGN 285
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMI---LDASRAGKVELL 331
D + ML G+ +N + +I DA R + E L
Sbjct: 286 LSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEEL 327
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/306 (19%), Positives = 128/306 (41%), Gaps = 28/306 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V+Y ++ + G +++ MR + L P+ Y +++
Sbjct: 233 PNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVG---------------LVPNEYTYTSLI 277
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YI 123
+A + AF + ++ Q G + + TY +++ + + E F K+ + I
Sbjct: 278 DANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVI 337
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN +Y L++ + D A+ + +++ RGI LY LCS K E A +
Sbjct: 338 PNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVV 397
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
M+++ + K + YT L+ A SGN ++ ++MK +VT +++ +
Sbjct: 398 MNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCK 457
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ L +A+ F ++ D + + F M+D + + + ++++
Sbjct: 458 NKLVSKAVDYFNRISNDFG-----------LQANAAIFTAMIDGLCKDNQVEAATTLFEQ 506
Query: 303 MLHHGL 308
M+ GL
Sbjct: 507 MVQKGL 512
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/203 (18%), Positives = 93/203 (45%), Gaps = 3/203 (1%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++ + ++Y +++A + +L ++K+ + + T+ ++++ + +
Sbjct: 406 IKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAV 465
Query: 113 EFFRKVQKSY--IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
++F ++ + NA + +++ L ++ + + A + E M ++G+V Y L
Sbjct: 466 DYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDG 525
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
G EAL DK+ ++ K +++YT L+ +Q A +M P+
Sbjct: 526 NFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPD 585
Query: 230 LVTCNIMVKAYLEHGLFEEAMKL 252
V C ++K + E G +EA++L
Sbjct: 586 EVLCISVLKKHYELGCIDEAVEL 608
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 15/203 (7%)
Query: 111 VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
V++ + +P + L + L G +EA+ M+R + L
Sbjct: 45 VFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHR 104
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
GK ++ + +P V +Y +I G+++ A +F +MK P+
Sbjct: 105 FAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPD 164
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CA 288
VT N M+ + + G ++ + F+EM K PD+ T+N +++ C
Sbjct: 165 TVTYNSMIDGFGKVGRLDDTVCFFEEM------------KDMCCEPDVITYNALINCFCK 212
Query: 289 AEKRWDDLELVYKRMLHHGLHFN 311
K LE Y+ M +GL N
Sbjct: 213 FGKLPIGLEF-YREMKGNGLKPN 234
>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
Length = 1013
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 136/302 (45%), Gaps = 25/302 (8%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
+ V YN ++ R E AF + ++ G P TYG ++ + + N
Sbjct: 278 NTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALL 337
Query: 116 RKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
++ + + PN + Y L++ REG DEA +++M G+ + Y +L R LC
Sbjct: 338 DEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKM 397
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
G+ + A + + ++ + +++P ++Y +I+ + ++A + ++M+N SPN+ T
Sbjct: 398 GQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTY 457
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN------------RE---------YDK--K 270
+IM+ + G E+A L +EM N RE +DK K
Sbjct: 458 SIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTK 517
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
V+PD+Y +N+++ + R ++ + +M GL N + +I + G +E
Sbjct: 518 VNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLES 577
Query: 331 LE 332
E
Sbjct: 578 AE 579
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/367 (23%), Positives = 149/367 (40%), Gaps = 45/367 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKF----------KTGTLER---- 48
PD Y S+ L + G ++E M R L +F K G LE
Sbjct: 522 PDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQL 581
Query: 49 ----WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
D L+P+ V+Y +L + + E + + QG YG+++ + +
Sbjct: 582 VQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSS 641
Query: 105 CGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + ++K+ +P+ Y L++ L + ++A +++M ++G+ +
Sbjct: 642 SGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVC 701
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y L LC +G A + I P V+YT LI G+I NA Y++N+M
Sbjct: 702 YNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEML 761
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+P+ +++ G E+AM L +EM + I +FN
Sbjct: 762 ATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGH-------------ASISSFNN 808
Query: 283 MLDA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK--------VELLEI 333
++D C K + L+L++ ++ GL NA +I S AGK VEL +
Sbjct: 809 LVDGFCKRGKMQETLKLLHV-IMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQK 867
Query: 334 TWEHLAR 340
T E AR
Sbjct: 868 TSESAAR 874
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 143/330 (43%), Gaps = 35/330 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ + G+ E F +I M + ++P+ + Y+ ++
Sbjct: 347 PNVVVYANLIDGFMREGNADEAFKMIKEMVA---------------AGVQPNKITYDNLV 391
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ Q + A +L+Q+ + +P TY L++E + +++ + I
Sbjct: 392 RGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGIS 451
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y ++++ L + G+ ++A +E+M +G+ +A +Y L C G A
Sbjct: 452 PNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEI 511
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
DK+ KV P + Y LI G ++ + F QM+ PN T + ++ YL+
Sbjct: 512 FDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLK 571
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV--- 299
+G E A +L Q M + GL D+ +D + + DD+E V
Sbjct: 572 NGDLESAEQLVQRMLD-----------TGLKPNDV----IYIDLLESYFKSDDIEKVSST 616
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+K ML G+ + + + +I + S +G +E
Sbjct: 617 FKSMLDQGVMLDNRIYGILIHNLSSSGNME 646
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 85/359 (23%), Positives = 141/359 (39%), Gaps = 33/359 (9%)
Query: 3 SYPDT-VAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTG-----TLERWDPRLEPD 56
+YP V SI L +GH V+D + KK + L D + P
Sbjct: 151 AYPSPPVVLASIHRALSDSGHRSPA--VLDVLVDTYKKSGRVQDAAEVVLMMRDRGMAPS 208
Query: 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR 116
I NA+L +R + V + + G P TY ++E +++ +
Sbjct: 209 IRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLV 268
Query: 117 KV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
++ ++ N + Y VL+ L R G +EA +DME G+V Y L LC +
Sbjct: 269 EMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSR 328
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCN 234
+ EA +D++ KP VV Y LI + GN A + +M PN +T +
Sbjct: 329 RSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYD 388
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHIN------------REYDKKGL---------- 272
+V+ + G + A L ++M DS+ + R + KK
Sbjct: 389 NLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENA 448
Query: 273 -VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ P++YT++ M+ + + + M GL NA + +I R G V L
Sbjct: 449 GISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSL 507
>gi|357502615|ref|XP_003621596.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496611|gb|AES77814.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 849
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 142/323 (43%), Gaps = 29/323 (8%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YP+ ++Y S+ + G G + FDV+ K F E + PD + YN++
Sbjct: 245 YPNLISYNSL-IDAGAKGEVD--FDVV-------VKFFD----EMLAEGIVPDRLTYNSL 290
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
L+ C + WE A +L ++ Q+G A TY ++ + G+ +L ++ +
Sbjct: 291 LSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMSSRRV 350
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P + Y +++ + ++A++ E+M+ R I Y + G+ +EA+
Sbjct: 351 WPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFDEAIG 410
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYL 241
Q ++ K VV+Y L+ G +F +MK + PN +T + M+ Y
Sbjct: 411 QCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDVYT 470
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G+F+EAM ++++ KK + D+ + +++D+ + ++
Sbjct: 471 KGGMFQEAMDVYKDF------------KKAQLEVDVVFYTSIIDSLCKNGLVESSIMLLI 518
Query: 302 RMLHHGLHFNAKRHLRMILDASR 324
M+ G+ N I+DASR
Sbjct: 519 AMIEKGIKPNVVT-FNSIIDASR 540
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 134/274 (48%), Gaps = 17/274 (6%)
Query: 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK--YNLVYEF 114
+ ++A+++A R + A + + ++ G P+ +Y +++ A G+ +++V +F
Sbjct: 213 VYSFSAMISAYGRNGHFSDAVDLFRSMRSWGVYPNLISYNSLIDAG-AKGEVDFDVVVKF 271
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F + + + +P+ L Y L++ +G + A + +M+++GIV A Y LC
Sbjct: 272 FDEMLAEGIVPDRLTYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCK 331
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVT 232
G+ + A ++++ P VV+Y+ +I C + +++A ++ +MK S + V+
Sbjct: 332 GGQIDLARRVLEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRVS 391
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N MV Y + G F+EA+ +EM +S + R D+ T+N +L
Sbjct: 392 YNTMVGIYAKLGRFDEAIGQCKEM--ESCGMKR----------DVVTYNALLSGYGRYGM 439
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+D++ +++ M ++ N + MI ++ G
Sbjct: 440 YDEVRRLFEEMKAWNIYPNTLTYSTMIDVYTKGG 473
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/315 (19%), Positives = 139/315 (44%), Gaps = 37/315 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P V Y ++ +A +++ ++ + M K ++ +++R V YN +
Sbjct: 351 WPTVVTYSTMIDGCAKANLLEDALNLYEEM------KLRSISVDR---------VSYNTM 395
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
+ + +++ A ++++ G K TY ++ G Y+ V F +++ I
Sbjct: 396 VGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEMKAWNI 455
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN L Y +++ + G EA+ +D ++ + Y + LC G E ++M
Sbjct: 456 YPNTLTYSTMIDVYTKGGMFQEAMDVYKDFKKAQLEVDVVFYTSIIDSLCKNGLVESSIM 515
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLE 242
+ + + KP VV++ +I A S ++ + +Q + + L + ++ A+
Sbjct: 516 LLIAMIEKGIKPNVVTFNSIIDASRQSPTLEYGVHGSSQAVEYPTEQLSSM-LIDGAFQN 574
Query: 243 HGLFEEAMKLFQEM-AEDSNHINREYDKKGL-----------------VIPDIYTFNTML 284
+ +K+F+++ AE + H RE D+KG + P++ TF+ +L
Sbjct: 575 KTGDDRILKMFEQLAAEKAGH--REKDRKGRQDQHCILWLFQKMHELNIKPNVVTFSAIL 632
Query: 285 DACAAEKRWDDLELV 299
+AC+ ++D ++
Sbjct: 633 NACSRCNSFEDASML 647
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 89/199 (44%), Gaps = 15/199 (7%)
Query: 153 ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI 212
++ G + L + L G+ AL + + V S++ +I A +G+
Sbjct: 170 KQNGRIAKGKLVSTMIGTLGRLGEINHALRLFESARLEGHGNTVYSFSAMISAYGRNGHF 229
Query: 213 QNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGL-FEEAMKLFQEMAEDSNHINREYDKK 270
+A +F M+++ PNL++ N ++ A + + F+ +K F EM +
Sbjct: 230 SDAVDLFRSMRSWGVYPNLISYNSLIDAGAKGEVDFDVVVKFFDEMLAEG---------- 279
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
++PD T+N++L CA++ W+ + + M G+ +A + + + G+++L
Sbjct: 280 --IVPDRLTYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDL 337
Query: 331 LEITWEHLARADRITPPAL 349
E ++ + R+ P +
Sbjct: 338 ARRVLEEMS-SRRVWPTVV 355
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM----EVMLACGKY 108
++P++V ++A+LNAC R +E A +L L+ + T+GL+M +V +
Sbjct: 621 IKPNVVTFSAILNACSRCNSFEDASMLLGALRLFDNQVYGVTHGLLMGYREQVWF---QA 677
Query: 109 NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
+++ R++ S + Y L + LW+ G+ A V + RR +
Sbjct: 678 QTLFDEMRRMDSS--TASAFYNALTDMLWQFGQRRGAEMVVTEGRRRNV 724
>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 827
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 128/289 (44%), Gaps = 15/289 (5%)
Query: 21 GHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVL 80
G + D + R++ K +F + D +EPD V YNA+++ W+ + +
Sbjct: 268 GTYNSIVDALCKARAMDKAEFVLRQM--VDKGVEPDGVTYNAIIHGYSCSGHWKESAKMF 325
Query: 81 QQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWRE 139
+++ +G P T+ M + G+ E F+ K ++P+ ++Y +L++ E
Sbjct: 326 RKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATE 385
Query: 140 GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSY 199
G+ + + M +GIV + L G +EA++ ++ +P VV+Y
Sbjct: 386 GRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTY 445
Query: 200 TGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
+ LI A G + +A F+QM + PN + ++ + HG +A + EM
Sbjct: 446 STLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMS 505
Query: 259 DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
KGL P+I F++++ + E R D + V+ ++H G
Sbjct: 506 -----------KGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIG 543
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/249 (19%), Positives = 115/249 (46%), Gaps = 16/249 (6%)
Query: 67 CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS---YI 123
C ++ E +L ++ + P A +Y V++ + + + +++ K
Sbjct: 170 CHAKRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCS 229
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ +++ +++ +++G+ +A + +M ++G+V Y + LC A ++A
Sbjct: 230 PDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFV 289
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+ ++ +P V+Y +I SG+ + +A +F +M + P+ VT + + + +
Sbjct: 290 LRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCK 349
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
HG ++A ++FQ M + +PDI +++ +L A E R+ D+ ++
Sbjct: 350 HGRSKDAEEIFQYMTTKGH------------MPDIVSYSILLHGYATEGRFADMNNLFHS 397
Query: 303 MLHHGLHFN 311
M G+ N
Sbjct: 398 MADKGIVSN 406
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 89/184 (48%), Gaps = 16/184 (8%)
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL-MQMDKI 187
Y +L++ R + D + V + R G+ +CLC A + +EA+ + + ++
Sbjct: 127 YGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHAKRTDEAVDVLLHRM 186
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK---NFCSPNLVTCNIMVKAYLEHG 244
+++ P +SY +I++ Q A + +M CSP++V+ N ++ + + G
Sbjct: 187 SELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQG 246
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
+A LF EM + KG V+PD+ T+N+++DA + D E V ++M+
Sbjct: 247 EVSKACNLFNEMVQ-----------KG-VVPDVGTYNSIVDALCKARAMDKAEFVLRQMV 294
Query: 305 HHGL 308
G+
Sbjct: 295 DKGV 298
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/347 (19%), Positives = 144/347 (41%), Gaps = 44/347 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ + G + + + M S+ +EP+ VY++++
Sbjct: 440 PNVVTYSTLISAFCRMGRLADAMEKFSQMISIG---------------IEPNTAVYHSLI 484
Query: 65 NA-CVRRKQWEGAFWVLQQLKQQGQKP-----SATTYGLVME--VMLACGKYNLVYEFFR 116
+ C+ + ++ + + + +P S+ + L +E VM A +NLV
Sbjct: 485 HGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGD 544
Query: 117 KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
+ P + + L++ GK ++A ++ M GI L C +GK
Sbjct: 545 R------PTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGK 598
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNI 235
++ L+ ++ KP V+Y ++ L +G A +F++M + + ++ T I
Sbjct: 599 IDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKI 658
Query: 236 MVKAYLEHGLFEEAMKLFQEM-AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
++K + L +EA+ LF ++ A D DI NTM++A +R +
Sbjct: 659 LLKGLCRNDLTDEAITLFHKLGAMDCKF-------------DITILNTMINALYKVRRRE 705
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
+ ++ + GL N + MI + + G VE + + + ++
Sbjct: 706 EANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKS 752
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/286 (19%), Positives = 112/286 (39%), Gaps = 52/286 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V + S+ G +++ F V+D+M S+ +EPD+V N ++
Sbjct: 546 PTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVG---------------IEPDVVTNNTLV 590
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + + + + +++ + KP+ TY +V++ +L G+ + + F ++ S
Sbjct: 591 SGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTA 650
Query: 125 NAL-AYKVLVNTLWREGKTDEAVS----------------------AVEDMERR------ 155
+ YK+L+ L R TDEA++ A+ + RR
Sbjct: 651 VDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDL 710
Query: 156 -------GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
G+V + + Y + R L G EEA + K P +I+ L
Sbjct: 711 FAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQ 770
Query: 209 SGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253
G+I A Y +++ S T ++++ + G E +K
Sbjct: 771 KGDIVKAGYYMSKVDGTIISLEASTTSLLMSLFSSKGKHREQIKFL 816
>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Brachypodium distachyon]
Length = 787
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/298 (20%), Positives = 139/298 (46%), Gaps = 14/298 (4%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D L PD++ YN +++A + A+ ++ ++ ++G K T V+ + +Y
Sbjct: 408 DDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYE 467
Query: 110 LVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
+ Q+ ++P+ ++Y ++ ++E ++ A+ ++M + + S + Y L
Sbjct: 468 EAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLI 527
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
+ L G+ +EA+ +++++ + P +Y +I A G+++NA N+M +N
Sbjct: 528 KGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFK 587
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P++VTCN ++ +G ++A+KLF+ E + D+ T+NT++
Sbjct: 588 PDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKV------------DVITYNTLIQTM 635
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRIT 345
+ D + M GL +A + ++ S AG+ E + LA + ++
Sbjct: 636 CKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLS 693
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 137/304 (45%), Gaps = 28/304 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y +A L QAG + E F + D M L GT L PD+V YN +
Sbjct: 307 PDLWTYNVLAAGLCQAGKVDEAFRLKDEMERL-------GT-------LLPDVVTYNTLA 352
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+AC + + A +L++++++G K + T+ +V++ + G+ K+ +
Sbjct: 353 DACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLA 412
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ + G +A + +++M RRG+ + LC + EEA
Sbjct: 413 PDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGL 472
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + P VSY ++ A N + A ++++M + +P++ T N ++K
Sbjct: 473 LQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSR 532
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +EA+ E+ E KGLV PD T+N ++ A E ++ + +
Sbjct: 533 MGRLKEAIDKLNELME-----------KGLV-PDDTTYNIIIHAYCKEGDLENAFQFHNK 580
Query: 303 MLHH 306
M+ +
Sbjct: 581 MVEN 584
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/307 (22%), Positives = 134/307 (43%), Gaps = 33/307 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ +AG+I + + ++D M + G L+ D N VL
Sbjct: 413 PDVITYNTLIHAHCKAGNIAKAYTLMDEM-------VRRG--------LKLDTFTLNTVL 457
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN---LVYEFFRKVQKS 121
+ K++E A +LQ Q+G P +YG VM +YN + + ++K
Sbjct: 458 YNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFK--EYNSEPALRLWDEMIEKK 515
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
P+ Y L+ L R G+ EA+ + ++ +G+V Y + C G E A
Sbjct: 516 LTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAF 575
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAY 240
+K+ + + KP VV+ L+ +G + A +F ++ +++T N +++
Sbjct: 576 QFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTM 635
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ G + A+ F +M + +GL PD +T+N +L A + R ++ + +
Sbjct: 636 CKDGDVDTALHFFADM-----------EARGLQ-PDAFTYNVVLSALSEAGRTEEAQNML 683
Query: 301 KRMLHHG 307
++ G
Sbjct: 684 HKLAESG 690
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 101/242 (41%), Gaps = 16/242 (6%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
RL P+ +N +++ + A L ++ G P A TY ++ G
Sbjct: 199 RLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEA 258
Query: 112 YEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+++K + P Y LV+ R G +A VE M G Y LA
Sbjct: 259 RALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAG 318
Query: 171 LCSAGKCEEALMQMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSP 228
LC AGK +EA D++ ++ P VV+Y L AC +A + +M+
Sbjct: 319 LCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKA 378
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-C 287
LVT NI++K + G E A+ +MA+D + PD+ T+NT++ A C
Sbjct: 379 TLVTHNIVIKGLCKDGELEGALGCLNKMADDG------------LAPDVITYNTLIHAHC 426
Query: 288 AA 289
A
Sbjct: 427 KA 428
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/315 (22%), Positives = 133/315 (42%), Gaps = 50/315 (15%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGL--------------- 97
L PD V YN +LNA R+ A +L ++K+ G P+ TY
Sbjct: 235 LSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQAT 294
Query: 98 -VMEVMLACG------KYNL----------VYEFFRKVQK-----SYIPNALAYKVLVNT 135
V+E M A G YN+ V E FR + + +P+ + Y L +
Sbjct: 295 KVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADA 354
Query: 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL 195
++ + +A+ +E+M +G+ + + + + LC G+ E AL ++K+ P
Sbjct: 355 CFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPD 414
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
V++Y LI A +GNI A + ++M + + T N ++ + +EEA L Q
Sbjct: 415 VITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQ 474
Query: 255 EMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKR 314
+ +G +PD ++ T++ A E + ++ M+ L +
Sbjct: 475 SPPQ-----------RGF-MPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSIST 522
Query: 315 HLRMILDASRAGKVE 329
+ +I SR G+++
Sbjct: 523 YNTLIKGLSRMGRLK 537
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 37/247 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKF---------------KTGTLERW 49
P Y ++ L + G +KE ID + L +K K G LE
Sbjct: 518 PSISTYNTLIKGLSRMGRLKE---AIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENA 574
Query: 50 --------DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
+ +PD+V N ++N + + A + + ++G+K TY +++
Sbjct: 575 FQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQT 634
Query: 102 MLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
M G + FF ++ + P+A Y V+++ L G+T+EA + + + G +
Sbjct: 635 MCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLSQ 694
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICK---VANKPLVVS--YTGLIQACLDSGNIQNA 215
+ + L +EA D + V N S YT L+ SG + A
Sbjct: 695 S-----FSSPLLKPSSVDEAESGKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEA 749
Query: 216 AYIFNQM 222
I ++M
Sbjct: 750 KAILDEM 756
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 75/183 (40%), Gaps = 25/183 (13%)
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
CS G +AL + + P V+Y L+ A G + A + +M K+ +P
Sbjct: 215 CSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTR 274
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMA------------------------EDSNHINRE 266
T N +V AY G ++A K+ + M +++ + E
Sbjct: 275 PTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDE 334
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
++ G ++PD+ T+NT+ DAC + D + + M G+ H +I + G
Sbjct: 335 MERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDG 394
Query: 327 KVE 329
++E
Sbjct: 395 ELE 397
>gi|356533316|ref|XP_003535211.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Glycine max]
Length = 918
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 125/279 (44%), Gaps = 14/279 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD+V+YN ++ A + A +++Q++++ +P+ T+ ++ G+
Sbjct: 515 LKPDVVLYNNIITAFCGMSNMDRAICMVKQMQKERYRPTTRTFLPIIHGFARAGEMRRAL 574
Query: 113 EFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F +++S IP Y L+ L + K +AV+ ++ M G+ + Y L +
Sbjct: 575 EIFDMMRRSGCIPTVHTYNALILGLVEKRKMAKAVAILDQMNVAGVGPNEHTYTTLMQGY 634
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NL 230
S G E+A + + V +Y L+++C SG +Q+A + +M P N
Sbjct: 635 ASLGDTEKAFQYFSVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNT 694
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
NI++ + G EA L Q+M +K V+PDI+T+ + ++AC
Sbjct: 695 FVYNILIDGWARRGDVWEAADLMQQM------------RKEGVLPDIHTYTSFVNACCKA 742
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + M G+ N K + +I +RA E
Sbjct: 743 GDMQKATEIIQEMEAFGIKPNLKTYTTLINGWARASMPE 781
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 114/254 (44%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P T + I +AG ++ ++ D MR ++G + P + YNA++
Sbjct: 552 PTTRTFLPIIHGFARAGEMRRALEIFDMMR-------RSGCI--------PTVHTYNALI 596
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
V +++ A +L Q+ G P+ TY +M+ + G +++F ++ +
Sbjct: 597 LGLVEKRKMAKAVAILDQMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFSVLRNEGLE 656
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ Y+ L+ + + G+ A++ ++M + I + +Y L G EA
Sbjct: 657 IDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADL 716
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
M ++ K P + +YT + AC +G++Q A I +M+ F PNL T ++ +
Sbjct: 717 MQQMRKEGVLPDIHTYTSFVNACCKAGDMQKATEIIQEMEAFGIKPNLKTYTTLINGWAR 776
Query: 243 HGLFEEAMKLFQEM 256
+ E+A+ F+EM
Sbjct: 777 ASMPEKALSCFEEM 790
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/337 (20%), Positives = 144/337 (42%), Gaps = 17/337 (5%)
Query: 45 TLERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
T E R +EP VY+++++A + E A ++++K++G + + TY +++
Sbjct: 296 TFESMQARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRKMKEEGIEMTIVTYSIIVGGFA 355
Query: 104 ACGKYNLVYEFFRKVQKSYIP--NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
GK + +F++ K +P NA+ Y ++ + D A + V +ME +GI
Sbjct: 356 KMGKADAADHWFKEA-KEKLPSLNAVTYGSIIYAHCQTCNMDRAEALVREMEVQGIDAPI 414
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
+Y+ + G E+ L+ D++ + P V+SY LI G + A I
Sbjct: 415 DIYHTMMDGYTMIGNEEKCLIVFDRLKECGFSPSVISYGCLINLYTKIGKVSKALQISKM 474
Query: 222 MK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
MK + N+ T ++++ +L+ + A +F++ +D + PD+ +
Sbjct: 475 MKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDG------------LKPDVVLY 522
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
N ++ A D + K+M + L +I +RAG++ ++ + R
Sbjct: 523 NNIITAFCGMSNMDRAICMVKQMQKERYRPTTRTFLPIIHGFARAGEMRRALEIFDMMRR 582
Query: 341 ADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSG 377
+ I +E + A++ L V+G
Sbjct: 583 SGCIPTVHTYNALILGLVEKRKMAKAVAILDQMNVAG 619
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 100/252 (39%), Gaps = 29/252 (11%)
Query: 68 VRRKQWEGAFWVLQQLKQQGQKPSA---------TTYGLVMEVMLACGKYNLVYEFFRKV 118
+R + E A W+ +G+ PS ++ V+E + V F ++
Sbjct: 212 MRERSEERARWLQGNGGDKGEYPSTRHKERDGSRKSFQKVLETQPE--NWQAVVTAFERI 269
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+K P Y ++V R G A E M+ RGI S+ +Y L E
Sbjct: 270 KK---PARKEYGLMVKYYARRGDMHHARQTFESMQARGIEPSSHVYSSLIHAYAVGRDME 326
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMV 237
EAL + K+ + + +V+Y+ ++ G A + F + K S N VT ++
Sbjct: 327 EALHCVRKMKEEGIEMTIVTYSIIVGGFAKMGKADAADHWFKEAKEKLPSLNAVTYGSII 386
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDL 296
A+ + + A L +EM + +G+ P DIY +TM+D +
Sbjct: 387 YAHCQTCNMDRAEALVREM-----------EVQGIDAPIDIY--HTMMDGYTMIGNEEKC 433
Query: 297 ELVYKRMLHHGL 308
+V+ R+ G
Sbjct: 434 LIVFDRLKECGF 445
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 22/172 (12%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
D Y ++ + ++G ++ V M +++P+ F VYN +
Sbjct: 658 DVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTF-----------------VYNIL 700
Query: 64 LNACVRRKQ-WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY 122
++ RR WE A ++QQ++++G P TY + G E ++++
Sbjct: 701 IDGWARRGDVWEAAD-LMQQMRKEGVLPDIHTYTSFVNACCKAGDMQKATEIIQEMEAFG 759
Query: 123 I-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
I PN Y L+N R ++A+S E+M+ + A Y+ L L S
Sbjct: 760 IKPNLKTYTTLINGWARASMPEKALSCFEEMKLAELKPDKAAYHCLMTSLLS 811
>gi|449450197|ref|XP_004142850.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g40400-like [Cucumis sativus]
Length = 632
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 139/331 (41%), Gaps = 37/331 (11%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+++ N +LN + K + + +++ + G +A T+ ++ V+ G N + F
Sbjct: 219 PNVIACNCILNGLAKMKSDAQCWELYEEMGRIGVHSNAYTFNILTYVLCRDGDVNKINGF 278
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+++ + P+ + Y L+++ R G+ ++A + M RRG++ Y L R LC
Sbjct: 279 LEKMEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCR 338
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
G+ EA ++ P VV Y LI A G +Q A + ++M P+ T
Sbjct: 339 LGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFT 398
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEK 291
C I+V+ Y G A+ L E+ K G+ + DIY + ++ C ++
Sbjct: 399 CRILVEGYGREGRLISALNLVVEI-----------QKLGVTVAHDIYKY-LIISLCREDR 446
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIK 351
F AK L IL+ S ++ E R++ ++ L+K
Sbjct: 447 P-----------------FAAKSLLERILEDSFQPDSDIYNKLIESFCRSNNVSEALLLK 489
Query: 352 ERFCNR---LENKDYGSAISCL--VSHPVSG 377
NR Y S I C+ ++ V G
Sbjct: 490 LEMINRNYKPTTDTYKSLIHCMCEINRSVDG 520
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 125/282 (44%), Gaps = 28/282 (9%)
Query: 43 TGTLERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
G LE+ + +PD+V YN ++++ VRR + E AF++ + + ++G P +Y +M
Sbjct: 276 NGFLEKMEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRG 335
Query: 102 MLACGKYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ G+ ++ F R + + P+ + Y L+ ++G EA S + +M GI
Sbjct: 336 LCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPD 395
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVA-------NKPLVVSY---------TGLIQ 204
+ L G+ AL + +I K+ K L++S L++
Sbjct: 396 SFTCRILVEGYGREGRLISALNLVVEIQKLGVTVAHDIYKYLIISLCREDRPFAAKSLLE 455
Query: 205 ACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
L+ + Q + I+N++ ++FC N V+ +++K + + ++ ++ + I
Sbjct: 456 RILED-SFQPDSDIYNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDTYKSLIHCMCEI 514
Query: 264 NREYDKKGL--------VIPDIYTFNTMLDACAAEKRWDDLE 297
NR D +GL VIPD +++ E D E
Sbjct: 515 NRSVDGEGLMVEMVESEVIPDHEICRALVNGYCKEGNADKAE 556
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 96/208 (46%), Gaps = 17/208 (8%)
Query: 107 KYNLVYE----FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
K +L++E F + V+ ++PN +A ++N L + + E+M R G+ +A
Sbjct: 198 KLDLIHESYWSFKKMVKLGFVPNVIACNCILNGLAKMKSDAQCWELYEEMGRIGVHSNAY 257
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+ L LC G + ++K+ + P VV+Y LI + + G +++A Y++ M
Sbjct: 258 TFNILTYVLCRDGDVNKINGFLEKMEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIM 317
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
+ P+LV+ +++ G EA +LF M I+R D PD+ +N
Sbjct: 318 YRRGVMPDLVSYTSLMRGLCRLGRVREAHQLFHRM------IDRGMD------PDVVLYN 365
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGLH 309
T++ A + + + M+ G+H
Sbjct: 366 TLIGAYCKDGMLQEARSLLHEMIGIGIH 393
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 108/264 (40%), Gaps = 17/264 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y S+ L + G ++E + M D ++PD+V+YN ++
Sbjct: 324 PDLVSYTSLMRGLCRLGRVREAHQLFHRM---------------IDRGMDPDVVLYNTLI 368
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
A + + A +L ++ G P + T +++E G+ ++QK +
Sbjct: 369 GAYCKDGMLQEARSLLHEMIGIGIHPDSFTCRILVEGYGREGRLISALNLVVEIQKLGVT 428
Query: 125 NAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
A YK L+ +L RE + A S +E + + +Y L C + EAL+
Sbjct: 429 VAHDIYKYLIISLCREDRPFAAKSLLERILEDSFQPDSDIYNKLIESFCRSNNVSEALLL 488
Query: 184 MDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLE 242
++ KP +Y LI C + ++ + +++ P+ C +V Y +
Sbjct: 489 KLEMINRNYKPTTDTYKSLIHCMCEINRSVDGEGLMVEMVESEVIPDHEICRALVNGYCK 548
Query: 243 HGLFEEAMKLFQEMAEDSNHINRE 266
G ++A L A+D + E
Sbjct: 549 EGNADKAESLLVSFAKDFQFFDSE 572
>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
[Vitis vinifera]
Length = 2037
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 148/323 (45%), Gaps = 20/323 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+P + N +L + V+ K+ E + + +++ +G P+ T+ +++ + G
Sbjct: 945 FKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAG 1004
Query: 113 EFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++++++ ++P + Y L+N ++G+ A+ ++ M +GI Y L
Sbjct: 1005 NLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNL 1064
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C+ + +A + + K+ K P V+Y LI + G I AA +FN+M F SPN
Sbjct: 1065 CTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNC 1124
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N ++ + G FEEA++L M + GL + ++ T+ T+L+
Sbjct: 1125 VTYNALIGGHCHVGDFEEALRLLDHM-----------EAAGLRLNEV-TYGTLLNGLCKH 1172
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG----KVELLEITWEHLARADRITP 346
++++ + + +RM + + + +I + G V+L+ ++ D IT
Sbjct: 1173 EKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITY 1232
Query: 347 PALIKERFCNRLENKDYGSAISC 369
+LI FC R+ N I C
Sbjct: 1233 SSLIN-GFC-RVGNIKSAKEIIC 1253
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 108/258 (41%), Gaps = 23/258 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ + G I V + M ++D L P+ V YNA++
Sbjct: 1087 PNEVTYNTLINGFVKEGKIGVAAQVFNEM-------------SKFD--LSPNCVTYNALI 1131
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+E A +L ++ G + + TYG ++ + K+ L +++ +
Sbjct: 1132 GGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMV 1191
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+AY VL++ L + G DEAV V +M + G+ Y L C G + A
Sbjct: 1192 VGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSA--- 1248
Query: 184 MDKICKVANKPLVVS---YTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKA 239
+ IC++ LV++ Y+ LI GN+ A ++ M N + TCN++V +
Sbjct: 1249 KEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSS 1308
Query: 240 YLEHGLFEEAMKLFQEMA 257
G EA K M+
Sbjct: 1309 LCRDGKLGEAEKFLCHMS 1326
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 2/206 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P+ V YN ++N V+ + A V ++ + P+ TY ++ G +
Sbjct: 1085 ISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEAL 1144
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++ + + N + Y L+N L + K + A +E M +V Y L L
Sbjct: 1145 RLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGL 1204
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C G +EA+ + + K P V++Y+ LI GNI++A I +M ++ N
Sbjct: 1205 CKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNK 1264
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEM 256
+ + ++ + +HG EAMK++ M
Sbjct: 1265 IIYSTLIYNFCQHGNVTEAMKVYAVM 1290
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 121/307 (39%), Gaps = 44/307 (14%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD + + S+ + L ++G + D L K GTL D +N +
Sbjct: 1577 FPDKLTFHSLILGLSKSG-------IPDLGVKLLGKMIMEGTL--------ADQFTFNIL 1621
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN----LVYEFFRKVQ 119
+N + AF ++ + G P TY + + + +++E ++
Sbjct: 1622 INKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEM---LE 1678
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
IP Y L+N + R G A ++ME G + R L GK E+
Sbjct: 1679 NGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTED 1738
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNL--VTCNIMV 237
A++ +D + ++ P + ++T L+ I A + M+ C L V N+++
Sbjct: 1739 AMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVME-LCGLKLDVVAYNVLI 1797
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA-------E 290
+G A +L++EM R D + P+I T+ ++DA +A E
Sbjct: 1798 MGMCANGDSAAAFELYEEM--------RHRD----LCPNITTYAVLVDAISAANNLIQGE 1845
Query: 291 KRWDDLE 297
K DL+
Sbjct: 1846 KLLTDLQ 1852
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/311 (21%), Positives = 120/311 (38%), Gaps = 43/311 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y S+ + G+IK ++I M +++G L + ++Y+ ++
Sbjct: 1227 PDVITYSSLINGFCRVGNIKSAKEIICRM-------YRSG--------LVLNKIIYSTLI 1271
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ A V + G T +++ + GK +F + + +
Sbjct: 1272 YNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLV 1331
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN++ Y ++N G A S +DM + G S Y L + LC G EA
Sbjct: 1332 PNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKF 1391
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++++ + V Y L+ SGN+ A +F++M +N P+ T + ++
Sbjct: 1392 LNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCR 1451
Query: 243 HGLFEEAMKLF-QEMAEDS---NHIN---------------------REYDKKGLVIPDI 277
G A+ LF M + NH+ E KKG PD
Sbjct: 1452 KGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKG-TCPDT 1510
Query: 278 YTFNTMLDACA 288
FN ++D+C+
Sbjct: 1511 VAFNAIIDSCS 1521
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 115/318 (36%), Gaps = 64/318 (20%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ V Y + L +AGH K F + M K GT PD V +NA+
Sbjct: 1472 FPNHVMYTCLVDGLSKAGHPKAAFYFFEEM-------MKKGTC--------PDTVAFNAI 1516
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME----------------VMLACGK 107
+++C RR Q A ++ G P+ TY +++ M+ G
Sbjct: 1517 IDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGI 1576
Query: 108 YN---LVYEFFRKVQKSYIP-----------------NALAYKVLVNTLWREGKTDEAVS 147
+ + + KS IP + + +L+N GK +A
Sbjct: 1577 FPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFD 1636
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
V M G+ Y + L E+ + + ++ + P Y LI
Sbjct: 1637 LVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMC 1696
Query: 208 DSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
G+IQ A + ++M+ + V + MV+ L G E+AM + M
Sbjct: 1697 RVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHML--------- 1747
Query: 267 YDKKGLVIPDIYTFNTML 284
+ ++P I TF T++
Sbjct: 1748 ---RMRLLPTIATFTTLM 1762
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 61/314 (19%), Positives = 121/314 (38%), Gaps = 29/314 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P+ V+Y +++ + + AF+ +++ ++G P + +++ G+
Sbjct: 1471 LFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKAN 1530
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+FF ++ PN Y +L++ ++ +S M R GI ++ L L
Sbjct: 1531 DFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGL 1590
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
+G + + + K+ ++ LI +SG ++ A + N M P+
Sbjct: 1591 SKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDR 1650
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T N + + F E+ + EM E+ VIP + T+++
Sbjct: 1651 DTYNHIFNGLNKKSAFRESTVVLHEMLENG------------VIPKHAQYITLINGMC-- 1696
Query: 291 KRWDDLELVYK-----RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRIT 345
R D++ +K L G H A+ M+ GK E + +H+ R R+
Sbjct: 1697 -RVGDIQGAFKLKDEMEALGFGSHEVAES--AMVRGLLHCGKTEDAMLVLDHMLRM-RLL 1752
Query: 346 PP----ALIKERFC 355
P + RFC
Sbjct: 1753 PTIATFTTLMHRFC 1766
>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 493
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 118/284 (41%), Gaps = 29/284 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V + S+ I+E ++D + L EP++V+YN ++
Sbjct: 141 PSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLG---------------YEPNVVIYNTII 185
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
++ +Q + A VL +++ G +P TY ++ + GK+ + + + I
Sbjct: 186 DSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIH 245
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + +++ +EG+ EA ++M +R + + Y L LC G +EA
Sbjct: 246 PDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKV 305
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
++ + P V+Y L+ S + +A I M + + T N + + Y +
Sbjct: 306 LNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQ 365
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
G F A K+ M V+PDIYTFN +LD
Sbjct: 366 AGQFNAAEKVLARMVSCG------------VLPDIYTFNMLLDG 397
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 127/297 (42%), Gaps = 18/297 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
EP IV + +++N + + A ++ Q+ G +P+ Y +++ + + +
Sbjct: 139 FEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTAL 198
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ ++K I P+ + Y L+ L+ GK + + DM R GI + +
Sbjct: 199 DVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVF 258
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPN 229
G+ EA Q D++ + + P +V+Y LI G + A + N M K F PN
Sbjct: 259 GKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGF-FPN 317
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
VT N +V Y + ++AMK+ M+ D V D +T+NT+
Sbjct: 318 AVTYNTLVNGYCKSKRVDDAMKILCVMSHDG------------VDGDTFTYNTLYQGYCQ 365
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA-SRAGKVELLEITWEHLARADRIT 345
+++ E V RM+ G+ M+LD GK+E + E L +++ +
Sbjct: 366 AGQFNAAEKVLARMVSCGV-LPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETVV 421
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 126/282 (44%), Gaps = 14/282 (4%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ R P IV ++ +L A + K++E + + ++ G ++ +++ C + +
Sbjct: 66 ESRPLPSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFSTLIDCFCRCSRLS 125
Query: 110 LVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
L K+ K + P+ + + LVN + EA+S V+ + G + +Y +
Sbjct: 126 LALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTII 185
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CS 227
LC + + AL ++ + K+ +P V++Y LI SG +A I + M
Sbjct: 186 DSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIH 245
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P+++T + M+ + + G EA K + EM I R D P+I T+N++++
Sbjct: 246 PDVITFSAMIDVFGKEGQLLEAKKQYDEM------IQRSVD------PNIVTYNSLINGL 293
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
D+ + V M+ G NA + ++ ++ +V+
Sbjct: 294 CIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVD 335
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 136/328 (41%), Gaps = 48/328 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLERWDPR 52
P+ V Y +I +L + + DV++ M SL + F +G +W
Sbjct: 176 PNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSG---KWGVS 232
Query: 53 -----------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----G 96
+ PD++ ++A+++ + Q A ++ Q+ P+ TY G
Sbjct: 233 ARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLING 292
Query: 97 LVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
L + +L K L + V K + PNA+ Y LVN + + D+A+ + M G
Sbjct: 293 LCIHGLLDEAKKVLNF----MVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDG 348
Query: 157 IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
+ G Y L + C AG+ A + ++ P + ++ L+ + G I+ A
Sbjct: 349 VDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKAL 408
Query: 217 YIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
+ K+ ++T NI++K + E+A LF +A KG V P
Sbjct: 409 VKLEDLQKSETVVGIITYNIIIKGMCKANKVEDAWYLFCSLA-----------LKG-VSP 456
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRM 303
D+ T+ TM+ ++ W + +Y++M
Sbjct: 457 DVITYTTMMIGLRRKRLWLEAHELYRKM 484
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 111/258 (43%), Gaps = 14/258 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ D+ ++ +++ R + A L ++ + G +PS T+G ++ +
Sbjct: 104 ISHDLYSFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAM 163
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ V Y PN + Y ++++L + D A+ + ME+ GI Y L L
Sbjct: 164 SLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRL 223
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
+GK + + + ++ P V++++ +I G + A +++M + PN+
Sbjct: 224 FHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNI 283
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N ++ HGL +EA K+ M KG P+ T+NT+++
Sbjct: 284 VTYNSLINGLCIHGLLDEAKKVLNFMVS-----------KGF-FPNAVTYNTLVNGYCKS 331
Query: 291 KRWDDLELVYKRMLHHGL 308
KR DD + M H G+
Sbjct: 332 KRVDDAMKILCVMSHDGV 349
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/246 (20%), Positives = 102/246 (41%), Gaps = 16/246 (6%)
Query: 107 KYNLVYEFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K+N F + +S +P+ + + L+ + + K + +S +E GI +
Sbjct: 53 KFNDALTLFCDMAESRPLPSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFS 112
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
L C C + AL + K+ K+ +P +V++ L+ IQ A + +Q+
Sbjct: 113 TLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGL 172
Query: 226 C-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
PN+V N ++ + E+ + A+ + M +K G + PD+ T+N+++
Sbjct: 173 GYEPNVVIYNTIIDSLCENRQVDTALDVLNHM-----------EKMG-IRPDVITYNSLI 220
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI 344
+W + M+ G+H + MI + G +LLE ++ R
Sbjct: 221 TRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEG--QLLEAKKQYDEMIQRS 278
Query: 345 TPPALI 350
P ++
Sbjct: 279 VDPNIV 284
>gi|449483905|ref|XP_004156728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g40400-like [Cucumis sativus]
Length = 636
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 139/331 (41%), Gaps = 37/331 (11%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+++ N +LN + K + + +++ + G +A T+ ++ V+ G N + F
Sbjct: 223 PNVIACNCILNGLAKMKSDAQCWELYEEMGRIGVHSNAYTFNILTYVLCRDGDVNKINGF 282
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+++ + P+ + Y L+++ R G+ ++A + M RRG++ Y L R LC
Sbjct: 283 LEKMEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCR 342
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
G+ EA ++ P VV Y LI A G +Q A + ++M P+ T
Sbjct: 343 LGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFT 402
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEK 291
C I+V+ Y G A+ L E+ K G+ + DIY + ++ C ++
Sbjct: 403 CRILVEGYGREGRLISALNLVVEI-----------QKLGVTVAHDIYKY-LIISLCREDR 450
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIK 351
F AK L IL+ S ++ E R++ ++ L+K
Sbjct: 451 P-----------------FAAKSLLERILEDSFQPDSDIYNKLIESFCRSNNVSEALLLK 493
Query: 352 ERFCNR---LENKDYGSAISCL--VSHPVSG 377
NR Y S I C+ ++ V G
Sbjct: 494 LEMINRNYKPTTDTYKSLIHCMCEINRSVDG 524
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 125/282 (44%), Gaps = 28/282 (9%)
Query: 43 TGTLERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
G LE+ + +PD+V YN ++++ VRR + E AF++ + + ++G P +Y +M
Sbjct: 280 NGFLEKMEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRG 339
Query: 102 MLACGKYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ G+ ++ F R + + P+ + Y L+ ++G EA S + +M GI
Sbjct: 340 LCRLGRVREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPD 399
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVA-------NKPLVVSY---------TGLIQ 204
+ L G+ AL + +I K+ K L++S L++
Sbjct: 400 SFTCRILVEGYGREGRLISALNLVVEIQKLGVTVAHDIYKYLIISLCREDRPFAAKSLLE 459
Query: 205 ACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
L+ + Q + I+N++ ++FC N V+ +++K + + ++ ++ + I
Sbjct: 460 RILED-SFQPDSDIYNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDTYKSLIHCMCEI 518
Query: 264 NREYDKKGL--------VIPDIYTFNTMLDACAAEKRWDDLE 297
NR D +GL VIPD +++ E D E
Sbjct: 519 NRSVDGEGLMVEMVESEVIPDHEICRALVNGYCKEGNADKAE 560
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 96/208 (46%), Gaps = 17/208 (8%)
Query: 107 KYNLVYE----FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
K +L++E F + V+ ++PN +A ++N L + + E+M R G+ +A
Sbjct: 202 KLDLIHESYWSFKKMVKLGFVPNVIACNCILNGLAKMKSDAQCWELYEEMGRIGVHSNAY 261
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+ L LC G + ++K+ + P VV+Y LI + + G +++A Y++ M
Sbjct: 262 TFNILTYVLCRDGDVNKINGFLEKMEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIM 321
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
+ P+LV+ +++ G EA +LF M I+R D PD+ +N
Sbjct: 322 YRRGVMPDLVSYTSLMRGLCRLGRVREAHQLFHRM------IDRGMD------PDVVLYN 369
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGLH 309
T++ A + + + M+ G+H
Sbjct: 370 TLIGAYCKDGMLQEARSLLHEMIGIGIH 397
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 108/264 (40%), Gaps = 17/264 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y S+ L + G ++E + M D ++PD+V+YN ++
Sbjct: 328 PDLVSYTSLMRGLCRLGRVREAHQLFHRM---------------IDRGMDPDVVLYNTLI 372
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
A + + A +L ++ G P + T +++E G+ ++QK +
Sbjct: 373 GAYCKDGMLQEARSLLHEMIGIGIHPDSFTCRILVEGYGREGRLISALNLVVEIQKLGVT 432
Query: 125 NAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
A YK L+ +L RE + A S +E + + +Y L C + EAL+
Sbjct: 433 VAHDIYKYLIISLCREDRPFAAKSLLERILEDSFQPDSDIYNKLIESFCRSNNVSEALLL 492
Query: 184 MDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLE 242
++ KP +Y LI C + ++ + +++ P+ C +V Y +
Sbjct: 493 KLEMINRNYKPTTDTYKSLIHCMCEINRSVDGEGLMVEMVESEVIPDHEICRALVNGYCK 552
Query: 243 HGLFEEAMKLFQEMAEDSNHINRE 266
G ++A L A+D + E
Sbjct: 553 EGNADKAESLLVSFAQDFQFFDSE 576
>gi|255577248|ref|XP_002529506.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531022|gb|EEF32875.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 808
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 139/331 (41%), Gaps = 36/331 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFK-------TGTLERWDPRLE- 54
PD+ Y ++ G+AG + ++++ M ++P + G+ W L+
Sbjct: 176 PDSETYNALINAHGRAGQWRWAMNIMEDMLREAIPPSRSTYNNLINACGSSGNWREALKV 235
Query: 55 ----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
PD+V +N VL+A Q+ A + +K +P TT +V+ ++
Sbjct: 236 SKQMTENGVGPDLVTHNIVLSAYKTGAQYSKALSYFELMKGTNIRPDTTTRNIVIYCLVK 295
Query: 105 CGKYNLVYEFFRKVQKSYI---PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
G+ + F +++ P+ + + +++ G+ + + M G+ +
Sbjct: 296 LGQCEKAIDIFNSMREKRAECRPDIVTFTSIIHLYSLSGQVENCKAVFSTMLAEGLTPTI 355
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y L G EEAL KI P VVSYT L+ + S + A +FN
Sbjct: 356 VSYNALIGAYAFHGMSEEALSVFKKIKASGLLPDVVSYTSLLSSYGRSKQPKKAREMFNM 415
Query: 222 MKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
MK PN+V+ N ++ AY +GL +A+K+ +EM +D H P+I T
Sbjct: 416 MKKAKLKPNVVSFNALIDAYGSNGLLADAVKVLREMEQDGIH------------PNIVTI 463
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
T+L AC + +++ V G+ N
Sbjct: 464 CTLLAACGRCGQKVNIDAVLSAAKMRGIKLN 494
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 140/309 (45%), Gaps = 29/309 (9%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
++ W R +PD YNA++NA R QW A +++ + ++ PS +TY ++ +
Sbjct: 169 MQEW--RCKPDSETYNALINAHGRAGQWRWAMNIMEDMLREAIPPSRSTYNNLINACGSS 226
Query: 106 GKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G + + +++ ++ + P+ + + ++++ + +A+S E M+ I
Sbjct: 227 GNWREALKVSKQMTENGVGPDLVTHNIVLSAYKTGAQYSKALSYFELMKGTNIRPDTTTR 286
Query: 165 YDLARCLCSAGKCEEALMQMDKI--CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+ CL G+CE+A+ + + + +P +V++T +I SG ++N +F+ M
Sbjct: 287 NIVIYCLVKLGQCEKAIDIFNSMREKRAECRPDIVTFTSIIHLYSLSGQVENCKAVFSTM 346
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYD----- 268
+P +V+ N ++ AY HG+ EEA+ +F+++ + Y
Sbjct: 347 LAEGLTPTIVSYNALIGAYAFHGMSEEALSVFKKIKASGLLPDVVSYTSLLSSYGRSKQP 406
Query: 269 ----------KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRM 318
KK + P++ +FN ++DA + D V + M G+H N +
Sbjct: 407 KKAREMFNMMKKAKLKPNVVSFNALIDAYGSNGLLADAVKVLREMEQDGIHPNIVTICTL 466
Query: 319 ILDASRAGK 327
+ R G+
Sbjct: 467 LAACGRCGQ 475
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 129/318 (40%), Gaps = 48/318 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + SI +G ++ V +M + L P IV YNA++
Sbjct: 318 PDIVTFTSIIHLYSLSGQVENCKAVFSTMLA---------------EGLTPTIVSYNALI 362
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
A E A V +++K G P +Y ++ + E F ++K+ +
Sbjct: 363 GAYAFHGMSEEALSVFKKIKASGLLPDVVSYTSLLSSYGRSKQPKKAREMFNMMKKAKLK 422
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN +++ L++ G +AV + +ME+ GI + L L + G+C + +
Sbjct: 423 PNVVSFNALIDAYGSNGLLADAVKVLREMEQDGIHPNIVTICTL---LAACGRCGQKV-N 478
Query: 184 MDKICKVAN----KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVK 238
+D + A K V+ I + ++ G + A ++N M+ +PN VT +++
Sbjct: 479 IDAVLSAAKMRGIKLNTVACNSAIGSYMNVGEYEKAVALYNSMRKMKVAPNSVTYTVLIS 538
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINRE--------YDKKGLVI---------------P 275
+ + +A++ F +M E + +E Y K+G + P
Sbjct: 539 GCCKMSKYGKAIEFFADMMELKIALTKEVCSSVICAYSKQGQITEAESIFTMMKMAGCCP 598
Query: 276 DIYTFNTMLDACAAEKRW 293
DI TF ML A A + W
Sbjct: 599 DIITFTAMLHAYNAGEHW 616
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 27/226 (11%)
Query: 109 NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
NLV+ + K+QK+Y Y +++ R TD+A +M+ + Y L
Sbjct: 127 NLVFRWM-KLQKNYCARTDMYNMMIRLHARHNLTDQARGLFFEMQEWRCKPDSETYNALI 185
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
AG+ A+ M+ + + A P +Y LI AC SGN + A + QM +N
Sbjct: 186 NAHGRAGQWRWAMNIMEDMLREAIPPSRSTYNNLINACGSSGNWREALKVSKQMTENGVG 245
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS-------------------------NH 262
P+LVT NI++ AY + +A+ F+ M + +
Sbjct: 246 PDLVTHNIVLSAYKTGAQYSKALSYFELMKGTNIRPDTTTRNIVIYCLVKLGQCEKAIDI 305
Query: 263 INREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
N +K+ PDI TF +++ + + ++ + V+ ML GL
Sbjct: 306 FNSMREKRAECRPDIVTFTSIIHLYSLSGQVENCKAVFSTMLAEGL 351
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 78/354 (22%), Positives = 146/354 (41%), Gaps = 48/354 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y S+ + G++ K+ ++ + M+ +L+P++V +NA++
Sbjct: 388 PDVVSYTSLLSSYGRSKQPKKAREMFNMMKK---------------AKLKPNVVSFNALI 432
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG-KYNLVYEFFRKVQKSYI 123
+A A VL++++Q G P+ T ++ CG K N+ +
Sbjct: 433 DAYGSNGLLADAVKVLREMEQDGIHPNIVTICTLLAACGRCGQKVNIDAVLSAAKMRGIK 492
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA---GKCEEA 180
N +A + + G+ ++AV+ M + + ++ Y L C GK E
Sbjct: 493 LNTVACNSAIGSYMNVGEYEKAVALYNSMRKMKVAPNSVTYTVLISGCCKMSKYGKAIEF 552
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKA 239
M ++ K+A V S +I A G I A IF MK C P+++T M+ A
Sbjct: 553 FADMMEL-KIALTKEVCS--SVICAYSKQGQITEAESIFTMMKMAGCCPDIITFTAMLHA 609
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHIN--------REYDKKG-----LVIPDIY-------- 278
Y + +A L QEM + ++ R ++K+G L++ +
Sbjct: 610 YNAGEHWGKACDLIQEMEDYDIQLDTIACSALMRAFNKRGNPSQVLILAEFMKEKEIPFS 669
Query: 279 --TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA-SRAGKVE 329
F M+ AC+ + W + L +++ + L +L R+GK+E
Sbjct: 670 DAIFFEMVSACSLLRDWRTI-LNLMKLMEPSFSVVSIGLLNQLLHVLGRSGKIE 722
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 28/171 (16%)
Query: 202 LIQACLDSGNIQNAAYIFNQMK---NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
LI+ G ++++ +F MK N+C+ + N+M++ + H L ++A LF EM E
Sbjct: 113 LIKEITQRGALEHSNLVFRWMKLQKNYCARTDMY-NMMIRLHARHNLTDQARGLFFEMQE 171
Query: 259 -----DSNHINREYDKKG------------------LVIPDIYTFNTMLDACAAEKRWDD 295
DS N + G + P T+N +++AC + W +
Sbjct: 172 WRCKPDSETYNALINAHGRAGQWRWAMNIMEDMLREAIPPSRSTYNNLINACGSSGNWRE 231
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
V K+M +G+ + H ++L A + G +++ L + I P
Sbjct: 232 ALKVSKQMTENGVGPDLVTH-NIVLSAYKTGAQYSKALSYFELMKGTNIRP 281
>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
Length = 440
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 109/246 (44%), Gaps = 14/246 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V Y+ +++ + + A+ ++ ++G P TY ++ + + +
Sbjct: 204 PDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDV 263
Query: 115 F-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
R V+ +P+ + Y +V+ G++ EA+ +E M G+ A Y L LC
Sbjct: 264 LNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCK 323
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+C EA +D + K KP V++Y+ L+ G + + + M +N P+
Sbjct: 324 NGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHV 383
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+I++ A +H + AM +F +M + + PD+ T+ T++D R
Sbjct: 384 FSILICACTKHQNVDVAMFVFSKMRQQR------------LTPDVVTYGTLIDGLCKSGR 431
Query: 293 WDDLEL 298
DD L
Sbjct: 432 VDDAML 437
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 60/300 (20%), Positives = 135/300 (45%), Gaps = 20/300 (6%)
Query: 52 RLEPDIVVYNAVLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
R+EP +++ +L + C ++ VL+++ + G P +Y ++++ + +
Sbjct: 130 RVEP--IIFTPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQE 187
Query: 111 VYEFFRKVQKS---YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
E + P+ ++Y +++ L++EG +D+A S +M RGI+ Y +
Sbjct: 188 ALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTI 247
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
LC A ++A+ ++++ K P ++Y ++ SG + A I +M +
Sbjct: 248 VAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGV 307
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
P+ VT ++ ++G EA K+ M K+GL P++ T++T+L
Sbjct: 308 EPDAVTYTSLMDYLCKNGRCIEARKILDSMI-----------KRGLK-PNVITYSTLLHG 355
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
A + ++ + M+ +G+ + +I ++ V++ + + R R+TP
Sbjct: 356 YATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACTKHQNVDVAMFVFSKM-RQQRLTP 414
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 93/213 (43%), Gaps = 18/213 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y +I L +A + + DV++ M K G + PD + YN+++
Sbjct: 239 PDVVTYNTIVAALCKAQAMDKAMDVLNRM-------VKNGVM--------PDCITYNSIV 283
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ Q + A +L+++ G +P A TY +M+ + G+ + +++
Sbjct: 284 HGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLK 343
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK-CEEALM 182
PN + Y L++ +G E ++ M R GI ++ L C C+ + + A+
Sbjct: 344 PNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILI-CACTKHQNVDVAMF 402
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNA 215
K+ + P VV+Y LI SG + +A
Sbjct: 403 VFSKMRQQRLTPDVVTYGTLIDGLCKSGRVDDA 435
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 15/169 (8%)
Query: 145 AVSAVEDMERR---GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
AVS M R + + Y L C C AG+ + + + K + + +T
Sbjct: 79 AVSGFNRMARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTP 138
Query: 202 LIQACLDSGNIQNAAYI-FNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
L+++ NA I +M C+P++ + NI++K +EA++L MA+D
Sbjct: 139 LLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADD 198
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
G PD+ +++T++D E D Y ML G+
Sbjct: 199 G----------GDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGI 237
>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
Length = 509
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 77/355 (21%), Positives = 140/355 (39%), Gaps = 43/355 (12%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M PD Y V +G I +L D S ++ ++G L PD V Y
Sbjct: 116 MKVKPDAFLY---TVVIGHLCKINKL----DLAASYFERMVQSGCL--------PDKVTY 160
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
++++ + +WE + +++ +G P TY V+ G+ + R+++
Sbjct: 161 TVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKG 220
Query: 121 S-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ P+ Y L++ L + + DEA E G V +Y LC AGK +E
Sbjct: 221 TGRSPSGSLYSTLIDGLCKHDRHDEARELFE--MAAGDVQDVIVYTSFISGLCKAGKLDE 278
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVK 238
A K+ + P VSY +I + + A + +Q M+ C P + C ++V
Sbjct: 279 AKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVD 338
Query: 239 AYLEHGLFEEAMKLFQEMAE------------------------DSNHINREYDKKGLVI 274
+ EEA + + M E D ++ + ++ +
Sbjct: 339 GLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCV 398
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
PD+ T+ ++DA R D+ +++RM G + + +I RA KV+
Sbjct: 399 PDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVD 453
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 121/251 (48%), Gaps = 15/251 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D++VY + ++ + + + A V ++ + G P +Y +++ + + + E
Sbjct: 259 DVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELM 318
Query: 116 -RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD-LARCLCS 173
+ +++ +P VLV+ L + + +EA +E M G + + Y + LC
Sbjct: 319 DQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCK 378
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
A + ++A + + K+ + P VV+YT +I A G + A +F +M + C+ ++V
Sbjct: 379 ADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVA 438
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
NI+++ Y +EA+ + +EMA +G + P++ + +T++D E R
Sbjct: 439 YNILIRGYCRAAKVDEAIAMIEEMA-----------GRG-IQPNVVSLSTIVDGLCKESR 486
Query: 293 WDDLELVYKRM 303
++ L+ ++M
Sbjct: 487 VEEARLLMEKM 497
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 103/223 (46%), Gaps = 18/223 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y I +L + + E +++D +ER + P + V ++
Sbjct: 293 PDPVSYNVIIYSLCKDNRVSEAKELMDQ------------AMER---KCMPGVPVCTVLV 337
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQK-PSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-Y 122
+ + ++ E A +L+++ + G + PS TY V++ + + + Y +K++++
Sbjct: 338 DGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGC 397
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P+ + Y +++ + G+ DEA + M RG Y L R C A K +EA+
Sbjct: 398 VPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIA 457
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
++++ +P VVS + ++ ++ A + +M NF
Sbjct: 458 MIEEMAGRGIQPNVVSLSTIVDGLCKESRVEEARLLMEKM-NF 499
>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
Length = 599
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 142/327 (43%), Gaps = 31/327 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ L ++ ++E + + M L P+ +N ++
Sbjct: 113 PDVVTYNTVMDGLCKSSRVEEALLLFNEMERLG---------------CTPNRRSHNTII 157
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
++ + + A V +++ + P + +YG++++ + GK N Y+ F+++ S I
Sbjct: 158 LGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGIT 217
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+A+ Y V+++ + DEA+ + M +G S + L C GK +EA
Sbjct: 218 PSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRL 277
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ ++ + P VV+Y+ LI + +A ++ M K C P +VT N ++ +
Sbjct: 278 LKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCK 337
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYK 301
G +EA ++ M PD+ T+NT++ C A + EL+
Sbjct: 338 AGRIKEAREVLDAMVSSGQS------------PDVVTYNTLVHGHCRAGQTERARELLSD 385
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKV 328
M+ GL N + ++ +A ++
Sbjct: 386 -MVARGLAPNVVTYTALVSGLCKANRL 411
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 110/229 (48%), Gaps = 16/229 (6%)
Query: 83 LKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGK 141
+ ++ P + +YG++++ + GK N F+K+ S + P+ +AY L++ L
Sbjct: 1 MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60
Query: 142 TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
D+A DM RRG S Y + C G EEA + K+ + + P VV+Y
Sbjct: 61 FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120
Query: 202 LIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM-AED 259
++ S ++ A +FN+M+ C+PN + N ++ + ++A ++F EM A+D
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+ PD +++ ++D A + ++ +++RML G+
Sbjct: 181 -------------IPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGI 216
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 131/307 (42%), Gaps = 31/307 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD+ +Y + L +AG + E + + M D + P V YN V+
Sbjct: 183 PDSWSYGILIDGLAKAGKLNEAYKLFQRM---------------LDSGITPSAVTYNVVI 227
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + A + + ++ +G +PS T+ ++++ GK + + +++ ++
Sbjct: 228 HGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHV 287
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ L + D+A +EDM +R + L LC AG+ +EA
Sbjct: 288 PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREV 347
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+D + P VV+Y L+ +G + A + + M +PN+VT +V +
Sbjct: 348 LDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCK 407
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM-LDACAAEKRWDDLELVYK 301
EA +F +M K P+++T+ + L C+A + L+L +
Sbjct: 408 ANRLPEACGVFAQM------------KSSGCAPNLFTYTALILGFCSAGQVDGGLKL-FG 454
Query: 302 RMLHHGL 308
M+ G+
Sbjct: 455 EMVCAGI 461
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/370 (20%), Positives = 153/370 (41%), Gaps = 79/370 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD+ +Y + L +AG + + R+L +K +G + P V Y +++
Sbjct: 8 PDSWSYGILIDGLAKAGKLND-------ARNLFQKLLHSG--------VTPSTVAYTSLI 52
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ ++ A + + ++G PS TY ++++ G + +K ++ ++
Sbjct: 53 HGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHV 112
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRG-----------IVG---------SAAL 163
P+ + Y +++ L + + +EA+ +MER G I+G + +
Sbjct: 113 PDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQV 172
Query: 164 YYD---------------LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+++ L L AGK EA ++ P V+Y +I
Sbjct: 173 FHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCL 232
Query: 209 SGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
+ + A +F M++ C P+ T NI++ A+ + G +EA +L + M +D +
Sbjct: 233 AYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGH------ 286
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDD----LELVYKRM----------LHHGLHFNAK 313
+PD+ T++T++ + R DD LE + KR L HGL +
Sbjct: 287 ------VPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGR 340
Query: 314 -RHLRMILDA 322
+ R +LDA
Sbjct: 341 IKEAREVLDA 350
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/281 (20%), Positives = 114/281 (40%), Gaps = 27/281 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PD Y +++ + + A + Q+L G PS Y ++ + ++
Sbjct: 6 VSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAR 65
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F + ++ P+ + Y V+++ + G +EA ++ M G V Y + L
Sbjct: 66 ELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGL 125
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C + + EEAL+ +++ ++ P S+ +I I A +F++M+ P+
Sbjct: 126 CKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDS 185
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEM------------------------AEDSNHINRE 266
+ I++ + G EA KLFQ M +++ + +
Sbjct: 186 WSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKS 245
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
KG P +TFN ++DA + D+ + KRM G
Sbjct: 246 MRSKG-CRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDG 285
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 110/278 (39%), Gaps = 26/278 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLE---RW 49
P V Y + + A + E ++ SMRS L K G L+ R
Sbjct: 218 PSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRL 277
Query: 50 DPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
R+ PD+V Y+ +++ + + A +L+ + ++ KP+ T ++ +
Sbjct: 278 LKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCK 337
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ E V P+ + Y LV+ R G+T+ A + DM RG+ +
Sbjct: 338 AGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVT 397
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L LC A + EA ++ P + +YT LI +G + +F +M
Sbjct: 398 YTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEM- 456
Query: 224 NFC---SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
C SP+ V + + G A+++ +E E
Sbjct: 457 -VCAGISPDHVVYGTLAAELCKSGRSARALEILREGRE 493
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 18/190 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L +A + E V M+S P++ Y A++
Sbjct: 393 PNVVTYTALVSGLCKANRLPEACGVFAQMKS---------------SGCAPNLFTYTALI 437
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
Q +G + ++ G P YG + + G+ E R+ ++S
Sbjct: 438 LGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRS 497
Query: 125 NALA---YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
A Y+ V+ L GK + A+ V DM R G + + L LC +G+ EA
Sbjct: 498 EAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEAR 557
Query: 182 MQMDKICKVA 191
+++I +A
Sbjct: 558 AVLEEIMDLA 567
>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
Length = 624
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 136/327 (41%), Gaps = 43/327 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y +I L +AG K+ ++D MR D P+I YN ++
Sbjct: 78 PTVVTYTNIVDGLCKAGRTKDAVKLLDEMR---------------DKGCSPNIYTYNVIV 122
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
++ + A +L+++ +G P TY ++ + C + + +F ++ + P
Sbjct: 123 EGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVT--P 180
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ ++Y ++N L + G D A ++ M RG Y L C G+ E A+ +
Sbjct: 181 DVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLL 240
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLE 242
D + K+ +P +V+Y L+ A G+I A + +M + F +P++V+ N + +
Sbjct: 241 DSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGF-TPDVVSYNACIDGLCK 299
Query: 243 HGLFEEAMKLFQEMAEDSNHIN--------------REYD---------KKGLVIPDIYT 279
++A +F M E N +E D ++ I DI
Sbjct: 300 AERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILL 359
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHH 306
+ +LD R+D+ ++ ++L
Sbjct: 360 YTVLLDGLCKGGRFDEACALFSKVLDE 386
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 140/328 (42%), Gaps = 59/328 (17%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D +PD + +L R Q E A +L ++K+ G P Y ++ +
Sbjct: 3 DKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFG 62
Query: 110 LVYEFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
++F ++ K++ +P + Y +V+ L + G+T +AV +++M +G + Y +
Sbjct: 63 QAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIV 122
Query: 169 RCLCSAGKCEEALMQMDK-------------------ICKV-----ANK--------PLV 196
LC K +EA +++ +CK A K P V
Sbjct: 123 EGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDV 182
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
VSYT +I SG++ +A+ + +QM N C+P++VT + ++ + + G E AM L
Sbjct: 183 VSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDS 242
Query: 256 M----------AEDS--------NHINR------EYDKKGLVIPDIYTFNTMLDACAAEK 291
M A +S HI + E +++G PD+ ++N +D +
Sbjct: 243 MLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFT-PDVVSYNACIDGLCKAE 301
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMI 319
R + V+ RM+ G NA + ++
Sbjct: 302 RVKKAKAVFDRMVERGCTPNASSYSMLV 329
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 128/303 (42%), Gaps = 42/303 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ + G ++ ++DSM L + P++V YN++L
Sbjct: 215 PDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCR---------------PNMVAYNSLL 259
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYI 123
A R A +L +++++G P +Y ++ + + F R V++
Sbjct: 260 GALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCT 319
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PNA +Y +LV L ++ + D+A++ VE + + LY L LC G+ +EA
Sbjct: 320 PNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACAL 379
Query: 184 M-----DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIM 236
+KIC +P V Y ++ + I A I QM +N C N+VT NI+
Sbjct: 380 FSKVLDEKIC----EPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCC--NVVTWNIL 433
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDD 295
V +A + M ++ IPD T+ T++DA C K
Sbjct: 434 VHGLCVDDRLSDAETMLLTMVDEG------------FIPDFVTYGTLVDAMCKCGKSAAA 481
Query: 296 LEL 298
LEL
Sbjct: 482 LEL 484
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 13/187 (6%)
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+ KS P+A + +L+ L R + ++A + M+ G V A+Y L A
Sbjct: 2 IDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDF 61
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIM 236
+A + ++ K P VV+YT ++ +G ++A + ++M++ CSPN+ T N++
Sbjct: 62 GQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVI 121
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
V+ E +EA K+ +EMA R Y PD+ T+N+ + R D+
Sbjct: 122 VEGLCEERKLDEAKKMLEEMAV------RGY------FPDVVTYNSFIKGLCKCDRVDEA 169
Query: 297 ELVYKRM 303
RM
Sbjct: 170 RKFLARM 176
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 75/377 (19%), Positives = 140/377 (37%), Gaps = 89/377 (23%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDV-------------------IDSMRSLPKKKF 41
+ P+ VAY S+ L + GHI + D+ ID + + K
Sbjct: 246 LGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKK 305
Query: 42 KTGTLERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
+R R P+ Y+ ++ ++K+ + A +++Q +++ Q Y ++++
Sbjct: 306 AKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLD 365
Query: 101 VMLACGKYNLVYEFFRKVQKSYI--PNALAYKVLVNTLWREGKTDEAVSAVEDMERR--- 155
+ G+++ F KV I P+ Y V++++ + + D+A+ + M R
Sbjct: 366 GLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCC 425
Query: 156 -------------------------------GIVGSAALYYDLARCLCSAGKCEEALMQM 184
G + Y L +C GK AL
Sbjct: 426 NVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELF 485
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHG 244
++ K P VV+Y+ LI + + A +F ++ ++ N M+ Y E+G
Sbjct: 486 EEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKL------DVALWNAMILGYAENG 539
Query: 245 LFEEAMKLFQEMAEDSNHIN-REYDK-----------------------KGLVIPDIYTF 280
+ +KLF E+ E N R + K KG PD++
Sbjct: 540 SGDLGLKLFVELIESDVEPNARTFGKEISGKLVKAESLGKARGLFDRAVKGGFFPDLFVA 599
Query: 281 NTMLDACAAEKRWDDLE 297
NT++D A + DLE
Sbjct: 600 NTLIDVFA---KCGDLE 613
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 103/239 (43%), Gaps = 38/239 (15%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSAT----TYGLVMEVMLACGKYN 109
EPD+ YN +L++ +R+Q + A + +Q+ ++ T +GL ++ L+ +
Sbjct: 390 EPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCCNVVTWNILVHGLCVDDRLSDAETM 449
Query: 110 LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
L+ V + +IP+ + Y LV+ + + GK+ A+ E+ + G V Y L
Sbjct: 450 LL----TMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALIT 505
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSY-------------TGLIQACLD-------- 208
L EEA + K+ +++ Y LI++ ++
Sbjct: 506 GLVHENMAEEAYLLFTKLDVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGK 565
Query: 209 --SG------NIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
SG ++ A +F++ +K P+L N ++ + + G EEA ++F M +
Sbjct: 566 EISGKLVKAESLGKARGLFDRAVKGGFFPDLFVANTLIDVFAKCGDLEEARRIFYSMKQ 624
>gi|218193284|gb|EEC75711.1| hypothetical protein OsI_12542 [Oryza sativa Indica Group]
Length = 1031
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 131/310 (42%), Gaps = 33/310 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
Y D +AY S+ + G I E+ ++ +M + + P YN +
Sbjct: 702 YADCIAYNSMMNGYLKGGQINEIERLMRNMH---------------ENEVYPSSASYNIL 746
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV---QK 120
++ +++ Q ++ + + ++G KP TY L++ + G + +F K+ +
Sbjct: 747 MHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEES 806
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
P Y L+N R G D A EDM+ G+V S + R LC GK EEA
Sbjct: 807 GLQPKHTHYIALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEA 866
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--PNLVTCNIMVK 238
++ I + P + ++T L+ I +A ++ Q+ C ++VT N+++
Sbjct: 867 IIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHL-KQLMESCGLKVDVVTYNVLIT 925
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+A+ L++EM KGL +P+I T+ T+ A A D E
Sbjct: 926 GLCNKKCICDALDLYEEM-----------KSKGL-LPNITTYITLTGAMYATGTMQDGEK 973
Query: 299 VYKRMLHHGL 308
+ K + G+
Sbjct: 974 LLKDIEDRGI 983
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 122/276 (44%), Gaps = 11/276 (3%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N +LNA V + E + L++ + TT +V+ + GK + +K++
Sbjct: 199 NNILNALVGINKSEYVWLFLKESLDRKFPLDVTTCNIVLNSLCTQGKLSKAESMLQKMKN 258
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+PNA+ Y ++N ++G+ A+ ++DME+ GI Y + LC + A
Sbjct: 259 CRLPNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARA 318
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
+ + ++ +V P SY LI G I A YIFNQM + P++ T ++
Sbjct: 319 YLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDG 378
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI---------PDIYTFNTMLDACAAE 290
Y +G +EA ++ EM + + RE K ++ PD+ T++ +++
Sbjct: 379 YCRNGRTDEARRVLYEM-QITGVRPREVSKAKQILKCMLADGIDPDVITYSALINGMCKM 437
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+ + + RM G+ N + ++ +AG
Sbjct: 438 GMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAG 473
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 128/311 (41%), Gaps = 31/311 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFD-VIDSMRS-----------LPKKKFKTGTLERWDP- 51
P+ V Y ++ +AGH KE +D RS L ++ G + +
Sbjct: 457 PNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQF 516
Query: 52 -------RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
++ D+ +N ++++ +R AF V + + G P TYG ++ +
Sbjct: 517 KQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQ 576
Query: 105 CGKYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G EF ++K+ + L+ + + G DEA+ E M R I+
Sbjct: 577 GGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYT 636
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y L C GK AL+ + + + P ++YT L+ ++ G ++ A+Y+F ++
Sbjct: 637 YTILLDGFCKRGKIVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEII 696
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKGLV 273
K + + N M+ YL+ G E +L + M E+ N + Y KKG +
Sbjct: 697 CKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQL 756
Query: 274 IPDIYTFNTML 284
+Y + M+
Sbjct: 757 SRTLYLYRDMV 767
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 112/258 (43%), Gaps = 14/258 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PD++ Y+A++N + +L ++++ G P+ Y ++ G
Sbjct: 420 IDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEAL 479
Query: 113 EFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++F + +S + N++ + L+ + +REG EA + M R I A + +
Sbjct: 480 KYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSY 539
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN-IQNAAYIFNQMKNFCSPNL 230
C G EA D + + P + +Y L++ G+ +Q ++ ++ C+ +
Sbjct: 540 CQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDE 599
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T N ++ +HG +EA+ L ++M + ++PD YT+ +LD
Sbjct: 600 KTLNTLLVGICKHGTLDEALDLCEKMVTRN------------ILPDTYTYTILLDGFCKR 647
Query: 291 KRWDDLELVYKRMLHHGL 308
+ ++ + ML GL
Sbjct: 648 GKIVPALILLQMMLEKGL 665
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 132/300 (44%), Gaps = 49/300 (16%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ V YN +LN V++ + + A +L +++ G + TY ++++ + + Y
Sbjct: 262 PNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLL 321
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++++ + P+ +Y L++ + EGK + A+ M R+ + S A Y L C
Sbjct: 322 LKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCR 381
Query: 174 AGKCEEAL-----MQMDKI-------------CKVAN--KPLVVSYTGLIQACLDSGNIQ 213
G+ +EA MQ+ + C +A+ P V++Y+ LI G I
Sbjct: 382 NGRTDEARRVLYEMQITGVRPREVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIH 441
Query: 214 NAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHIN 264
I ++M K+ PN V +V + + G +EA+K F ++ N +
Sbjct: 442 ETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALL 501
Query: 265 REYDKKGLVIP---------------DIYTFNTMLDACAAEKRWDDLEL--VYKRMLHHG 307
+ ++G++ D+ +FN ++D+ +R + LE VY M+ HG
Sbjct: 502 CSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYC--QRGNVLEAFSVYDNMVRHG 559
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 16/220 (7%)
Query: 86 QGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEA 145
Q Q PS L + + R + + N + +LVN +EGK +A
Sbjct: 120 QAQMPSQAMSVLRHLALTGFSCSAIFSSLLRTISRCDPTNLFSVDLLVNAYVKEGKVLDA 179
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANK-PLVVSYTGLIQ 204
+A+ M+ G S ++ L K E + + + + K PL V+ ++
Sbjct: 180 AAAIFFMDECGFKASLFSCNNILNALVGINKSEYVWLFLKE--SLDRKFPLDVTTCNIVL 237
Query: 205 ACL-DSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
L G + A + +MKN PN VT N ++ Y++ G + A+++ +M
Sbjct: 238 NSLCTQGKLSKAESMLQKMKNCRLPNAVTYNTILNWYVKKGRCKSALRILDDM------- 290
Query: 264 NREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
+K G + D+YT+N M+D KR L+ KRM
Sbjct: 291 ----EKNG-IEADLYTYNIMIDKLCKLKRSARAYLLLKRM 325
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 24/161 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P VA SI L + G ++E V S+ + G + P I + ++
Sbjct: 845 PSEVAESSIVRGLCKCGKVEEAIIVFSSI-------MRAGMV--------PTIATFTTLM 889
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL-----VYEFFRKVQ 119
+ + + + AF + Q ++ G K TY +++ + C K + +YE +
Sbjct: 890 HGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGL--CNKKCICDALDLYEEMK--S 945
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
K +PN Y L ++ G + ++D+E RGIV S
Sbjct: 946 KGLLPNITTYITLTGAMYATGTMQDGEKLLKDIEDRGIVPS 986
>gi|168000162|ref|XP_001752785.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695948|gb|EDQ82289.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 482
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 82/338 (24%), Positives = 146/338 (43%), Gaps = 24/338 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
LEP++ + ++L A R + A + Q++ + G P+ TY + + + ++N
Sbjct: 138 LEPNVACFTSLLEAHARTGNFVRAESIYQEMLKTGPAPTEVTYQVYINALCKAERFNDAE 197
Query: 113 EFFRKVQKS--YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
F+ + +S P+A Y ++++T + GK E + M+ G+ + + L
Sbjct: 198 RIFKCLDESAEAKPDARLYNLMLHTYGKAGKFSEQQALFRQMKGAGVPMTVVTFNSLMAF 257
Query: 171 LCSAGKCEEAL--MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
+ E L MQ KI KP V++YTGLI A + ++ A +F +M +
Sbjct: 258 QKTVADAEACLRHMQAAKI-----KPDVITYTGLINAYSKARRVEEAHVVFREMVASGLR 312
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P+ + N ++ AY + E A LF+ M +D PDI ++ T+L A
Sbjct: 313 PSRIAYNTLLDAYAKCKEVEGAESLFKSMGQDRCR------------PDIRSYTTLLAAY 360
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPP 347
A E + KRM GL N + ++ + + + T+E L +A I P
Sbjct: 361 ANTGNMKKAERLLKRMKQAGLEPNVVTYGTLMQGYTSVHDINAMLQTFEDLQKAG-IKPN 419
Query: 348 ALIKERFCNRL-ENKDYGSAISCLVSHPVSGSPEFSRN 384
+ I + +D+ SA+S SG P R+
Sbjct: 420 STIFTLLVRTFGQQEDFESALSWFKKMLDSGCPADQRS 457
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/315 (19%), Positives = 124/315 (39%), Gaps = 50/315 (15%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNLVYE 113
P V Y +NA + +++ A + + L + + KP A Y L++ GK++
Sbjct: 175 PTEVTYQVYINALCKAERFNDAERIFKCLDESAEAKPDARLYNLMLHTYGKAGKFSEQQA 234
Query: 114 FFRKVQKSYIP---------------------------------NALAYKVLVNTLWREG 140
FR+++ + +P + + Y L+N +
Sbjct: 235 LFRQMKGAGVPMTVVTFNSLMAFQKTVADAEACLRHMQAAKIKPDVITYTGLINAYSKAR 294
Query: 141 KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYT 200
+ +EA +M G+ S Y L + E A + + +P + SYT
Sbjct: 295 RVEEAHVVFREMVASGLRPSRIAYNTLLDAYAKCKEVEGAESLFKSMGQDRCRPDIRSYT 354
Query: 201 GLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
L+ A ++GN++ A + +MK PN+VT +++ Y ++ F+++
Sbjct: 355 TLLAAYANTGNMKKAERLLKRMKQAGLEPNVVTYGTLMQGYTSVHDINAMLQTFEDL--- 411
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
+K + P+ F ++ ++ ++ +K+ML G + +R +
Sbjct: 412 ---------QKAGIKPNSTIFTLLVRTFGQQEDFESALSWFKKMLDSGCPAD-QRSRAAL 461
Query: 320 LDASRAG--KVELLE 332
+DA + K E+LE
Sbjct: 462 MDACQTSEQKQEVLE 476
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/178 (19%), Positives = 76/178 (42%), Gaps = 1/178 (0%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
+++PD++ Y ++NA + ++ E A V +++ G +PS Y +++ C +
Sbjct: 275 KIKPDVITYTGLINAYSKARRVEEAHVVFREMVASGLRPSRIAYNTLLDAYAKCKEVEGA 334
Query: 112 YEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
F+ + Q P+ +Y L+ G +A ++ M++ G+ + Y L +
Sbjct: 335 ESLFKSMGQDRCRPDIRSYTTLLAAYANTGNMKKAERLLKRMKQAGLEPNVVTYGTLMQG 394
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP 228
S L + + K KP +T L++ + ++A F +M + P
Sbjct: 395 YTSVHDINAMLQTFEDLQKAGIKPNSTIFTLLVRTFGQQEDFESALSWFKKMLDSGCP 452
>gi|356577532|ref|XP_003556878.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Glycine max]
Length = 932
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 127/279 (45%), Gaps = 14/279 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD+V+YN ++ A + A +++Q++++ +P+ T+ ++ G+
Sbjct: 525 LKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAGEMRRAL 584
Query: 113 EFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F +++S IP Y L+ L + + +AV+ +++M G+ + Y L +
Sbjct: 585 EIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEHTYTTLMQGY 644
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NL 230
S G E+A + + V +Y L+++C SG +Q+A + +M P N
Sbjct: 645 ASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNT 704
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
NI++ + G EA L Q+M K+GL +PDI+T+ + ++AC
Sbjct: 705 FVYNILIDGWARRGDVWEAADLMQQMR-----------KEGL-LPDIHTYTSFINACCKA 752
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + M G+ N K + +I +RA E
Sbjct: 753 GDMQKATEIIQEMEASGIKPNLKTYTTLINGWARASMPE 791
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 114/254 (44%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P T + I +AG ++ ++ D MR ++G + P + YNA++
Sbjct: 562 PTTRTFLPIIHGFARAGEMRRALEIFDMMR-------RSGCI--------PTVHTYNALI 606
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
V ++Q A +L ++ G P+ TY +M+ + G +++F ++ +
Sbjct: 607 LGLVEKRQMTKAVAILDEMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFTVLRNEGLE 666
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ Y+ L+ + + G+ A++ ++M + I + +Y L G EA
Sbjct: 667 IDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADL 726
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
M ++ K P + +YT I AC +G++Q A I +M+ + PNL T ++ +
Sbjct: 727 MQQMRKEGLLPDIHTYTSFINACCKAGDMQKATEIIQEMEASGIKPNLKTYTTLINGWAR 786
Query: 243 HGLFEEAMKLFQEM 256
+ E+A+ F+EM
Sbjct: 787 ASMPEKALSCFEEM 800
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 126/291 (43%), Gaps = 15/291 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++ I +Y+ +++ E V +LK+ G PS +YG ++ + GK +
Sbjct: 420 IDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFFPSVISYGCLINLYTKVGKVSKAL 479
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E + ++ S I N Y +L+N + A S ED + G+ LY ++
Sbjct: 480 EISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAF 539
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C G + A+ + ++ K ++P ++ +I +G ++ A IF+ M ++ C P +
Sbjct: 540 CGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTV 599
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T N ++ +E +A+ + EM V P+ +T+ T++ A+
Sbjct: 600 HTYNALILGLVEKRQMTKAVAILDEM------------NVAGVGPNEHTYTTLMQGYASL 647
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE-LLEITWEHLAR 340
+ + + + GL + + ++ ++G+++ L +T E A+
Sbjct: 648 GDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAK 698
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 126/285 (44%), Gaps = 17/285 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+EP VY+++++A + E A ++++K++G + + TY +++ G +
Sbjct: 315 IEPSSHVYSSLIHAYAVGRDMEEALHCVRKMKEEGIEMTIVTYSIIVGGFAKMGNADAAD 374
Query: 113 EFFRKVQKSYIP--NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+F + K +P NA+ Y ++ + D A + V +ME +GI +Y+ +
Sbjct: 375 HWFEEA-KEKLPSLNAVIYGGIIYAHCQICNMDRAEALVREMEEQGIDAPIDIYHTMMDG 433
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
G E+ L+ D++ + P V+SY LI G + A I MK + N
Sbjct: 434 YTMIGNEEKCLIVFDRLKECGFFPSVISYGCLINLYTKVGKVSKALEISKMMKMSGIKHN 493
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+ T ++++ +L+ + A +F++ +D + PD+ +N ++ A
Sbjct: 494 MKTYSMLINGFLKLKDWANAFSVFEDFTKDG------------LKPDVVLYNNIITAFCG 541
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEI 333
D + ++M + L +I +RAG++ LEI
Sbjct: 542 MGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAGEMRRALEI 586
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 113/279 (40%), Gaps = 30/279 (10%)
Query: 68 VRRKQWEGAFWVLQQLKQQGQKPSA---------TTYGLVMEVMLACGKYNLVYEFFRKV 118
+R + E A W+ +G+ PS ++ ++E + V F ++
Sbjct: 222 MRERSEEKARWLQGNGGDKGEYPSTWHEERDGSRKSFQKILETQPE--NWQAVVTAFERI 279
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+K P Y ++V R G A E M RGI S+ +Y L E
Sbjct: 280 KK---PARKEYGLMVKYYGRRGDMHHARQTFESMRARGIEPSSHVYSSLIHAYAVGRDME 336
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMV 237
EAL + K+ + + +V+Y+ ++ GN A + F + K S N V ++
Sbjct: 337 EALHCVRKMKEEGIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKLPSLNAVIYGGII 396
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDL 296
A+ + + A L +EM E +G+ P DIY +TM+D +
Sbjct: 397 YAHCQICNMDRAEALVREMEE-----------QGIDAPIDIY--HTMMDGYTMIGNEEKC 443
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEIT 334
+V+ R+ G + + +I ++ GKV + LEI+
Sbjct: 444 LIVFDRLKECGFFPSVISYGCLINLYTKVGKVSKALEIS 482
>gi|224120112|ref|XP_002331139.1| predicted protein [Populus trichocarpa]
gi|222872867|gb|EEF09998.1| predicted protein [Populus trichocarpa]
Length = 329
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 124/285 (43%), Gaps = 14/285 (4%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + ++ DI VY V+N + + AF + +L ++G + TYG +++ + G
Sbjct: 26 EMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFDELTEKGLVANVHTYGALIDGVCKAG 85
Query: 107 KYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ ++Q + N L Y L++ + G DEA ME++G
Sbjct: 86 EMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRGLIDEAFKVQVIMEKKGFENDIYTLN 145
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+A L + EEA + + + P VVSYT LI GN A +F +MK
Sbjct: 146 TIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTTLIDIYCKEGNFVEAKKLFQEMKKA 205
Query: 226 CS-PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
PN VT N+++ + + G +EA +L EM KG + PDIYT+ ++L
Sbjct: 206 GGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMR-----------AKG-IFPDIYTYTSLL 253
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ DD ++ + GL N + +I S+ G+ E
Sbjct: 254 HGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSE 298
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 99/211 (46%), Gaps = 8/211 (3%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+ + ++YN +++ +R + AF V ++++G + T + + K N
Sbjct: 102 LDVNQLIYNTLIDGYCKRGLIDEAFKVQVIMEKKGFENDIYTLNTIAD---GLRKLNQPE 158
Query: 113 EFFR----KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
E R ++K +PN ++Y L++ +EG EA ++M++ G +A Y L
Sbjct: 159 EAKRWLLTMIEKGVVPNVVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLI 218
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP 228
G+ +EA D++ P + +YT L+ G + +A +FN+++ P
Sbjct: 219 DGHSKKGRMKEAYELRDEMRAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLP 278
Query: 229 -NLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
N+VT ++ + G EEA KL+ EM E
Sbjct: 279 LNVVTYTAIISGLSKEGRSEEAFKLYDEMTE 309
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 88/190 (46%), Gaps = 2/190 (1%)
Query: 18 GQAGHIKELFDVIDSMRSLPK-KKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGA 76
G I L + D +R L + ++ K L + + P++V Y +++ + + A
Sbjct: 136 GFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTTLIDIYCKEGNFVEA 195
Query: 77 FWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNT 135
+ Q++K+ G +P+A TY ++++ G+ YE +++ K P+ Y L++
Sbjct: 196 KKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKGIFPDIYTYTSLLHG 255
Query: 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL 195
GK D+AV ++ ++G+ + Y + L G+ EEA D++ + P
Sbjct: 256 ECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAFKLYDEMTEAGLTPD 315
Query: 196 VVSYTGLIQA 205
YT L+ +
Sbjct: 316 DRVYTSLVSS 325
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 19/173 (10%)
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
Y +L++ GK DE E+M +GI +Y + C G + A D++
Sbjct: 3 TYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFDEL 62
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLF 246
+ V +Y LI +G ++ A + N+M+ N + N ++ Y + GL
Sbjct: 63 TEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRGLI 122
Query: 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC------AAEKRW 293
+EA K+ M +KKG DIYT NT+ D KRW
Sbjct: 123 DEAFKVQVIM-----------EKKGFE-NDIYTLNTIADGLRKLNQPEEAKRW 163
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP+ V YN +++ ++ + + A+ + +++ +G P TY ++ GK + E
Sbjct: 208 EPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKGIFPDIYTYTSLLHGECIFGKLDDAVE 267
Query: 114 FFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F +V++ +P N + Y +++ L +EG+++EA ++M G+ +Y L L
Sbjct: 268 LFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAFKLYDEMTEAGLTPDDRVYTSLVSSLH 327
Query: 173 SA 174
A
Sbjct: 328 KA 329
>gi|255660980|gb|ACU25659.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 376
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 134/286 (46%), Gaps = 15/286 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + ++ PD VVYNA+LN R + + F + + + +G + S +++ ++M + G
Sbjct: 15 EIVESKVSPDAVVYNAMLNGYFRXXKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNG 73
Query: 107 KYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K V + ++ S ++ +++ Y +LV+ G D+++ +E E++G V A Y
Sbjct: 74 KVXEVIXIWELMKXSGFVEDSITYGILVHGFCXNGYIDKSLHVLEMAEQKGGVLXAFAYS 133
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+ LC + A+ ++ + K KP Y LI + + ++A +F +M
Sbjct: 134 AMINGLCKEANLBRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMXTM 193
Query: 226 -CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
CSP ++T N ++ ++ +F A L +E+ + KGL P + T++ ++
Sbjct: 194 HCSPTIITYNTLINGLCKNEMFGXAYNLVKELLD-----------KGLN-PGVITYSMLM 241
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ + + ++ ++ G + + H +I GK++L
Sbjct: 242 KGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQL 287
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 105/238 (44%), Gaps = 14/238 (5%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
Y+A++N + + A VL + + G KP+A Y ++ ++ K+ FR++
Sbjct: 132 YSAMINGLCKEANLBRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMX 191
Query: 120 KSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ P + Y L+N L + A + V+++ +G+ Y L + LC K E
Sbjct: 192 TMHCSPTIITYNTLINGLCKNEMFGXAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVE 251
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
+AL +++ KP V + LI G +Q A ++ M + C+PNLV+ N ++
Sbjct: 252 KALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLM 311
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
+ + + G A+ ++ + + + PDI ++N L + R D
Sbjct: 312 EGFYKDGDIRNALVIWARILRNG------------LEPDIISYNITLKGLCSCNRISD 357
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/137 (18%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D L P ++ Y+ ++ + E A + Q+ +G KP + +++ + + G
Sbjct: 224 ELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVG 283
Query: 107 KYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K L + + + PN +++ L+ +++G A+ + R G+ Y
Sbjct: 284 KMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYN 343
Query: 166 DLARCLCSAGKCEEALM 182
+ LCS + +A++
Sbjct: 344 ITLKGLCSCNRISDAIL 360
>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Vitis vinifera]
Length = 708
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 135/331 (40%), Gaps = 35/331 (10%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL------ERWDPR 52
M P+ + + ++ L + G IK+ F++++ M R + TL + W +
Sbjct: 288 MGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEK 347
Query: 53 -------------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM 99
+P++ Y A++N + + A +L ++++QG P+ TY ++
Sbjct: 348 AFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLI 407
Query: 100 EVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ G + YE + K + PN Y +++ L ++G DEA + + G+
Sbjct: 408 DGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQ 467
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
Y L C +L+ +K+ KV P + SYT LI ++ + +
Sbjct: 468 ADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERL 527
Query: 219 FNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI 277
F + + P T M+ Y +G A+KLFQ M SNH PD
Sbjct: 528 FEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRM---SNHG---------CAPDS 575
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
T+ ++ E + DD +Y M+ GL
Sbjct: 576 ITYGALISGLCKESKLDDARNLYDAMMDKGL 606
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 134/305 (43%), Gaps = 19/305 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P+++ + A++N ++ + AF +L+++ ++G KP+ T+ +++ + G +
Sbjct: 290 LAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAF 349
Query: 113 EFFRKVQKS--YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
F K+ +S Y PN Y ++N +E K + A + M+ +G+V + Y L
Sbjct: 350 RLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDG 409
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
C G A MD + K P + +Y +I G++ A + N++ + +
Sbjct: 410 HCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQAD 469
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
VT I++ + ++ F +M K G PDI+++ T++
Sbjct: 470 GVTYTILMSVHCRQADTNRSLVFFNKML-----------KVGFT-PDIHSYTTLISTFCR 517
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEITWEHLARADRIT 345
+K+ + E +++ + GL K + MI R G V+L + H D IT
Sbjct: 518 QKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSIT 577
Query: 346 PPALI 350
ALI
Sbjct: 578 YGALI 582
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 106/247 (42%), Gaps = 13/247 (5%)
Query: 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREG 140
+++ QG PS T V++V + G + F ++ Q+ P+ +++K++V G
Sbjct: 179 EMQNQGLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMG 238
Query: 141 KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYT 200
+ EA + M RG + A + C G + K+ ++ P V+++T
Sbjct: 239 RVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFT 298
Query: 201 GLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
LI G+I+ A + +M + PN+ T ++ + G E+A +LF ++
Sbjct: 299 ALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRS 358
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
+ P+++T+ M++ E + + E++ RM GL N + +I
Sbjct: 359 DGY-----------KPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLI 407
Query: 320 LDASRAG 326
+ G
Sbjct: 408 DGHCKVG 414
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 112/261 (42%), Gaps = 17/261 (6%)
Query: 53 LEPDIVVYNAVLNACVRR-KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
+ PD V + ++ AC + E W L + ++G T L+++ G N V
Sbjct: 220 VSPDCVSFKLMVVACCNMGRVLEAERW-LNAMVERGFIVDNATCTLIIDAFCQKGYVNRV 278
Query: 112 YEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+F K V+ PN + + L+N L ++G +A +E+M RRG + + L
Sbjct: 279 VGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDG 338
Query: 171 LCSAGKCEEALMQMDKICKV-ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSP 228
LC G E+A K+ + KP V +YT +I + A + ++M+ P
Sbjct: 339 LCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVP 398
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
N T ++ + + G F A +L M K+G P+IYT+N ++D
Sbjct: 399 NTNTYTTLIDGHCKVGNFVRAYELMDLMG-----------KEGFS-PNIYTYNAIIDGLC 446
Query: 289 AEKRWDDLELVYKRMLHHGLH 309
+ D+ + ++ HGL
Sbjct: 447 KKGSLDEAYRLLNKVSVHGLQ 467
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 93/247 (37%), Gaps = 28/247 (11%)
Query: 115 FRKVQKSYIPNALAY-------------KVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
FR + YI +A A + +V GK EAV+ V +M+ +G+V S
Sbjct: 130 FRHFMRLYIVSATALIGNKNLERANEVMQCMVMNFAENGKLKEAVNMVVEMQNQGLVPST 189
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
+ G E A ++C+ P VS+ ++ AC + G + A N
Sbjct: 190 QTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAERWLNA 249
Query: 222 M--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
M + F N TC +++ A+ + G + F +M E GL P++
Sbjct: 250 MVERGFIVDN-ATCTLIIDAFCQKGYVNRVVGYFWKMVE-----------MGLA-PNVIN 296
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
F +++ + + + M+ G N H +I + G E + L
Sbjct: 297 FTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLV 356
Query: 340 RADRITP 346
R+D P
Sbjct: 357 RSDGYKP 363
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/297 (18%), Positives = 107/297 (36%), Gaps = 53/297 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T Y ++ + G+ ++++D M K+ F P+I YNA++
Sbjct: 398 PNTNTYTTLIDGHCKVGNFVRAYELMDLM---GKEGF------------SPNIYTYNAII 442
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ ++ + A+ +L ++ G + TY ++M V N FF K+ K +
Sbjct: 443 DGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFT 502
Query: 124 PNALAYKVLVNTLWRE-----------------------------------GKTDEAVSA 148
P+ +Y L++T R+ G T AV
Sbjct: 503 PDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKL 562
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+ M G + Y L LC K ++A D + P V+ L
Sbjct: 563 FQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYCK 622
Query: 209 SGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
+ A + ++++ + T N +V+ G + A F ++ + ++NR
Sbjct: 623 KDDSSTAINVLDRLEK--RQWIRTVNTLVRKLCSEGKLDMAALFFHKLLDKEPNVNR 677
>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
Length = 820
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 118/287 (41%), Gaps = 49/287 (17%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP++ YNA++ + A +L Q+++ G +P TY L++ G +
Sbjct: 332 EPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFR 391
Query: 114 FFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R ++ + + + Y VL++ L + GK DEA S + +E RGI ++ + + LC
Sbjct: 392 LLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLC 451
Query: 173 SAGK-----------------------------------CEEALMQMDKICKVANKPLVV 197
AGK +E L +D++ + KP V
Sbjct: 452 KAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTV 511
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+YT +I + N A I+ QM CSP++VT V+AY G +EA + EM
Sbjct: 512 NYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEM 571
Query: 257 AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
KK I D +NT++D + + D + K M
Sbjct: 572 ------------KKCRTIVDAMAYNTLIDGHTSIGQTDRAVTILKHM 606
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 131/312 (41%), Gaps = 29/312 (9%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD +N+++ R +Q E A + ++ +G A +Y ++E G+ + E
Sbjct: 162 PDAFTFNSLILGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALEL 221
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
FR++ + P+ + LV L G+ +E + ++ M+ G + Y L C
Sbjct: 222 FREMTQ---PDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCRE 278
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTC 233
K EEA ++++ P VV+ T ++ A G + A +F M+ C PN+ T
Sbjct: 279 QKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTY 338
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAE------------------DSNHIN------REYDK 269
N +V+ + G +AM L +M E HI R +
Sbjct: 339 NAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEG 398
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
GL D YT+N ++DA + D+ ++ + + G+ N+ +I +AGK +
Sbjct: 399 NGLA-ADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFD 457
Query: 330 LLEITWEHLARA 341
+ E++ A
Sbjct: 458 VACTFLENMISA 469
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 111/248 (44%), Gaps = 19/248 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P YNA++ A RR A L + + G +P A T+ ++ + + ++
Sbjct: 127 PTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDL 186
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F K+ + + +A++Y L+ G+ DEA+ +M + + AA L + LC
Sbjct: 187 FCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQPDMYTHAA----LVKGLCD 242
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
AG+ EE L + K+ ++ +P +Y L+ + A I N+M + P +VT
Sbjct: 243 AGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVT 302
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEK 291
C I+V AY G A+++F+ M P+++T+N ++ C A K
Sbjct: 303 CTIVVNAYCREGRMSGAVRVFESMRFKGCE------------PNVWTYNAIVQGFCNAGK 350
Query: 292 RWDDLELV 299
+ + L+
Sbjct: 351 VYKAMALL 358
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 137/305 (44%), Gaps = 35/305 (11%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V+Y ++ +AG I E ++ M +PD+ + A++
Sbjct: 198 DAVSYAALIEGFCEAGRIDEALELFREMT-------------------QPDMYTHAALVK 238
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YIP 124
+ E +LQ++K+ G +P+ Y ++++ K + ++ S +P
Sbjct: 239 GLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMP 298
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ ++VN REG+ AV E M +G + Y + + C+AGK +A+ +
Sbjct: 299 CVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALL 358
Query: 185 DKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
D++ + +P VV+Y LI+ C+D G+I +A + M+ N + + T N+++ A +
Sbjct: 359 DQMRECGVEPDVVTYNLLIRGQCID-GHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCK 417
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +EA LF + EY +G + P+ TFNT+++ ++D +
Sbjct: 418 TGKVDEACSLFDGL---------EY--RG-IRPNSVTFNTVINGLCKAGKFDVACTFLEN 465
Query: 303 MLHHG 307
M+ G
Sbjct: 466 MISAG 470
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 106/265 (40%), Gaps = 6/265 (2%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC-GKYNLV 111
+ P+ V +N V+N + +++ A L+ + G P TY +E + G +
Sbjct: 436 IRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGL 495
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +QK P+ + Y +++N L+ E A M +G Y R
Sbjct: 496 FFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAY 555
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNL 230
C+ G+ +EA + ++ K ++Y LI G A I M S PN
Sbjct: 556 CNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVTILKHMTGVASMPNH 615
Query: 231 VTCNIMVKAYLEHGLFE----EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
T I+++ L+ L E +A +++ + E KK V T+ ++L+
Sbjct: 616 FTFFILLRHLLQRRLAEHVPLKATSVWKTIELADVFELFELMKKNSVPSSARTYLSILEG 675
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFN 311
+ E+R D++ + M L N
Sbjct: 676 FSEERRLDEVTSLVSLMKEENLPLN 700
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 94/243 (38%), Gaps = 22/243 (9%)
Query: 90 PSATTYGLVMEVMLACGKYNLVYE---FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAV 146
P+ TY ++ + C + +L + V+ + P+A + L+ R + + A
Sbjct: 127 PTGATYNALIRAL--CRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAH 184
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
M RG A Y L C AG+ +EAL ++ + +P + ++ L++
Sbjct: 185 DLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEAL----ELFREMTQPDMYTHAALVKGL 240
Query: 207 LDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
D+G + + +MK P +V + EEA K+ EM +
Sbjct: 241 CDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSG----- 295
Query: 266 EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRA 325
++P + T +++A E R V++ M G N + ++ A
Sbjct: 296 -------LMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNA 348
Query: 326 GKV 328
GKV
Sbjct: 349 GKV 351
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
+YNA++N + + + A+ +L + G P+ Y ++ + A G+ + E FR
Sbjct: 703 IYNALVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRAKEIFRSS 762
Query: 119 Q-KSYIPNALAYKVLVNTLWREGKTD---EAVSAVEDME 153
+ K Y + + +KV+++ R+G D + +S +E M+
Sbjct: 763 RWKEYNTDEIVWKVIIDGFIRKGHADMCHDMISMLEQMK 801
>gi|357142290|ref|XP_003572522.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 669
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 133/298 (44%), Gaps = 48/298 (16%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ + G + + ++++M +P+ V YNA L
Sbjct: 278 PDVVIYSTLVNGFSEQGRVDDALVLLNTMLC------------------KPNTVCYNAAL 319
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
++W+ ++ ++ ++ P+ T+ ++ + G + E ++QK
Sbjct: 320 KGLCMAERWKDVGELIAEMVRKDCPPNEATFSMLTSCLCQHGLVDCAMEVVEQMQKYGCR 379
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA-RCLCSAGK---CEE 179
P+ + Y L+N +G+ D+A+ ++ M + + ++ A + LC + EE
Sbjct: 380 PDVVIYNTLINYFSEQGRVDDALMLLDSM----LCNPDTISFNAALKALCRTERWYDVEE 435
Query: 180 ALMQMDKICKVANKPLV-VSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
+ QM + + PL+ +++ LI + G + +A +F QM + C+P++VT + ++
Sbjct: 436 LIAQMLR----EDCPLIEMTFNILIDSLCQHGLVNHAIEVFEQMPKYRCTPDIVTYSSLI 491
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
+ E GL E A++LFQ M PDI+++N +L RW+D
Sbjct: 492 NGFSEQGLVESAIELFQSMP---------------CKPDIFSYNAVLKGLCRAARWED 534
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/303 (20%), Positives = 124/303 (40%), Gaps = 38/303 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ + G + + ++DSM PD + +NA L
Sbjct: 380 PDVVIYNTLINYFSEQGRVDDALMLLDSMLC------------------NPDTISFNAAL 421
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
A R ++W ++ Q+ ++ T+ ++++ + G N E F ++ K
Sbjct: 422 KALCRTERWYDVEELIAQMLREDCPLIEMTFNILIDSLCQHGLVNHAIEVFEQMPKYRCT 481
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L+N +G + A+ + M + + S Y + + LC A + E+A
Sbjct: 482 PDIVTYSSLINGFSEQGLVESAIELFQSMPCKPDIFS---YNAVLKGLCRAARWEDAGEL 538
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLE 242
+ + + P +++ LI + G A +F QM + S P++ T N ++ + E
Sbjct: 539 IANMARKDCPPNEITFNILINSLCQKGFADRAIEVFKQMPEYGSTPDIFTYNALINGFSE 598
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G ++A+ L M+ PD ++N+ L +RW + E +
Sbjct: 599 QGRLDDALNLLSTMS---------------CKPDAISYNSTLKGLCRAERWKEAEEIVAE 643
Query: 303 MLH 305
ML
Sbjct: 644 MLR 646
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 84/393 (21%), Positives = 154/393 (39%), Gaps = 45/393 (11%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+S + V Y ++ ++G + + ++I SM + PD Y
Sbjct: 172 VSGAANVVTYTALINGYCRSGRLADALNLIASMP------------------VAPDTYTY 213
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N VL KQWE A +++++ + P+ T+ + G + + ++ +
Sbjct: 214 NTVLKGLCGAKQWEKAEELMEEMIRNNCHPNEVTFATQIRSFCQNGLLDHAVQLLERMPR 273
Query: 121 -SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA-RCLCSAGKCE 178
P+ + Y LVN +G+ D+A+ + M + + Y+ A + LC A + +
Sbjct: 274 YGCTPDVVIYSTLVNGFSEQGRVDDALVLLNTM----LCKPNTVCYNAALKGLCMAERWK 329
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
+ + ++ + P +++ L G + A + QM+ + C P++V N ++
Sbjct: 330 DVGELIAEMVRKDCPPNEATFSMLTSCLCQHGLVDCAMEVVEQMQKYGCRPDVVIYNTLI 389
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ E G ++A+ L M L PD +FN L A +RW D+E
Sbjct: 390 NYFSEQGRVDDALMLLDSM---------------LCNPDTISFNAALKALCRTERWYDVE 434
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNR 357
+ +ML +I + G V +E + + R TP + N
Sbjct: 435 ELIAQMLREDCPLIEMTFNILIDSLCQHGLVNHAIEVFEQMPKY-RCTPDIVTYSSLING 493
Query: 358 L-ENKDYGSAISCLVSHPVSGSPE-FSRNAWLK 388
E SAI S P P+ FS NA LK
Sbjct: 494 FSEQGLVESAIELFQSMPC--KPDIFSYNAVLK 524
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/264 (19%), Positives = 108/264 (40%), Gaps = 23/264 (8%)
Query: 43 TGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
G++ +P P ++ N ++ ++ A VL LK+ G A ++ ++
Sbjct: 99 VGSMPSSEP---PAVIACNILIKKLCAHRRLADAERVLDALKESGSA-DAVSHNTLVAGY 154
Query: 103 LACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G+ + S N + Y L+N R G+ +A++ + M +
Sbjct: 155 CRDGRLADAERVLEAAKVSGAANVVTYTALINGYCRSGRLADALNLIASMP---VAPDTY 211
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y + + LC A + E+A M+++ + P V++ I++ +G + +A + +M
Sbjct: 212 TYNTVLKGLCGAKQWEKAEELMEEMIRNNCHPNEVTFATQIRSFCQNGLLDHAVQLLERM 271
Query: 223 KNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
+ C+P++V + +V + E G ++A+ L M L P+ +N
Sbjct: 272 PRYGCTPDVVIYSTLVNGFSEQGRVDDALVLLNTM---------------LCKPNTVCYN 316
Query: 282 TMLDACAAEKRWDDLELVYKRMLH 305
L +RW D+ + M+
Sbjct: 317 AALKGLCMAERWKDVGELIAEMVR 340
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 81/183 (44%), Gaps = 8/183 (4%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R PDIV Y++++N + E A + Q + KP +Y V++ + ++
Sbjct: 479 RCTPDIVTYSSLINGFSEQGLVESAIELFQSMPC---KPDIFSYNAVLKGLCRAARWEDA 535
Query: 112 YEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
E + +K PN + + +L+N+L ++G D A+ + M G Y L
Sbjct: 536 GELIANMARKDCPPNEITFNILINSLCQKGFADRAIEVFKQMPEYGSTPDIFTYNALING 595
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
G+ ++AL + + ++ KP +SY ++ + + A I +M + C PN
Sbjct: 596 FSEQGRLDDAL---NLLSTMSCKPDAISYNSTLKGLCRAERWKEAEEIVAEMLRKKCPPN 652
Query: 230 LVT 232
VT
Sbjct: 653 EVT 655
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 16/145 (11%)
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC 226
L + LC+ + +A +D + K + VS+ L+ G + +A + K
Sbjct: 116 LIKKLCAHRRLADAERVLDAL-KESGSADAVSHNTLVAGYCRDGRLADAERVLEAAKVSG 174
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+ N+VT ++ Y G +A+ L M V PD YT+NT+L
Sbjct: 175 AANVVTYTALINGYCRSGRLADALNLIASMP---------------VAPDTYTYNTVLKG 219
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFN 311
K+W+ E + + M+ + H N
Sbjct: 220 LCGAKQWEKAEELMEEMIRNNCHPN 244
>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 83/361 (22%), Positives = 150/361 (41%), Gaps = 34/361 (9%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
MSS PD V Y ++ G ++ ++D M + LE + VY
Sbjct: 281 MSSPPDVVTYGTMVHGYCVRGELENAVKLLDEMAA---------------KGLESNATVY 325
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
+V+ + Q A VL+ + G A + V+ + G F ++QK
Sbjct: 326 TSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQK 385
Query: 121 SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ + + + L+N L R G+ EA +++M +G+ Y L C G E
Sbjct: 386 RGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVE 445
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVK 238
A +++ P VV+YT L G+++ A + ++M N N+ T N ++
Sbjct: 446 AFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLIN 505
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G E+AM++ EM E + H D+YT+ T++D +D
Sbjct: 506 GLCKFGNLEQAMRIMTEM-EAAGHRT-----------DVYTYTTLIDTLCKSGEFDRAHN 553
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLEITWEHLARADRITPPALIKERF 354
+ + ML G+ + + ++ +G+VE LLE E R + +T +L+K+ +
Sbjct: 554 MLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQ-Y 612
Query: 355 C 355
C
Sbjct: 613 C 613
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 112/256 (43%), Gaps = 20/256 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L D V + A++N R + + A VLQ++ +G TY ++++ C + N+V
Sbjct: 388 LAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGY--CKRGNMV- 444
Query: 113 EFFR----KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
E FR V + PN + Y L + L ++G A + +M +G+ + Y L
Sbjct: 445 EAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLI 504
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
LC G E+A+ M ++ ++ V +YT LI SG A + +M
Sbjct: 505 NGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIK 564
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P++ T N+++ + G E KL + M E + V P++ T+N+++
Sbjct: 565 PSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKN------------VRPNVVTYNSLMKQY 612
Query: 288 AAEKRWDDLELVYKRM 303
+K +YK M
Sbjct: 613 CIDKNMKSTTEIYKGM 628
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/317 (20%), Positives = 125/317 (39%), Gaps = 31/317 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V + ++ L +AG +KE V+ M D L+ D+V Y +++
Sbjct: 391 DRVTHTALINGLCRAGELKEADRVLQEM---------------VDKGLDVDVVTYTVLID 435
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIP 124
+R AF V ++ + P+ TY + + + G E ++ K
Sbjct: 436 GYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLEL 495
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N Y L+N L + G ++A+ + +ME G Y L LC +G+ + A +
Sbjct: 496 NVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNML 555
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLE 242
++ KP + +Y L+ SG ++ + M KN PN+VT N ++K Y
Sbjct: 556 QEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNV-RPNVVTYNSLMKQYCI 614
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ ++++ M V P+ T+N ++ + + ++
Sbjct: 615 DKNMKSTTEIYKGMHSQE------------VAPNENTYNILIKGHCKARNMKEALYFHQE 662
Query: 303 MLHHGLHFNAKRHLRMI 319
M+ GL A + +I
Sbjct: 663 MIEKGLRLTASSYSALI 679
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/276 (20%), Positives = 109/276 (39%), Gaps = 17/276 (6%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEF 114
++ +N +L A + + + A Q + P TYG ++ G+ N V
Sbjct: 254 NVCSHNILLKALLSAGRLKDA---CQHFDEMSSPPDVVTYGTMVHGYCVRGELENAVKLL 310
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
K NA Y ++ L +G+ +A+ +EDM G+ A ++ + CS
Sbjct: 311 DEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSK 370
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTC 233
G A +++ K V++T LI +G ++ A + +M + ++VT
Sbjct: 371 GDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTY 430
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
+++ Y + G EA ++ EM + R V P++ T+ + D +
Sbjct: 431 TVLIDGYCKRGNMVEAFRVHNEM------VGRR------VAPNVVTYTALSDGLCKQGDV 478
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ M + GL N + +I + G +E
Sbjct: 479 RAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLE 514
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/241 (19%), Positives = 96/241 (39%), Gaps = 21/241 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLE---RW 49
P+ V Y +++ L + G ++ +++ M SL K G LE R
Sbjct: 460 PNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRI 519
Query: 50 DPRLEP-----DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+E D+ Y +++ + +++ A +LQ++ +G KPS TY ++M
Sbjct: 520 MTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCM 579
Query: 105 CGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ + ++K+ PN + Y L+ + + M + + +
Sbjct: 580 SGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENT 639
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L + C A +EAL ++ + + SY+ LI+ A F++M+
Sbjct: 640 YNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFDKMR 699
Query: 224 N 224
N
Sbjct: 700 N 700
>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
Length = 668
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 80/360 (22%), Positives = 146/360 (40%), Gaps = 45/360 (12%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D AY ++ + GH+ +I SM + PD Y ++
Sbjct: 109 DVFAYNTLVAGYCRYGHLDAARRLIGSMP------------------VAPDAYTYTPLIR 150
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIP 124
R + A +L + ++G +P+ TY +++E M + +++ K P
Sbjct: 151 VLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTP 210
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK---CEEAL 181
N + Y V++N + REG+ D+A + + G Y L + LC++ + EE
Sbjct: 211 NIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELF 270
Query: 182 MQ-MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
+ M+K C P V++ LI+ G ++ A + QM ++ C+ N CNI++ +
Sbjct: 271 AEMMEKNC----MPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINS 326
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ G ++A K M + PD ++ T+L +RW+D + +
Sbjct: 327 ICKQGRVDDAFKFLNNMGSYGCN------------PDTISYTTVLKGLCRAERWNDAKEL 374
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLEITWEHLARADRITPPALIKERFC 355
K M+ + N I + G +E L+E EH +T AL+ FC
Sbjct: 375 LKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNG-FC 433
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/337 (21%), Positives = 147/337 (43%), Gaps = 50/337 (14%)
Query: 5 PDTVAYRSIAVTLGQAGH---IKELFDVIDSMRSLPKK-------KF--KTGTLERWDPR 52
PDTV+Y ++ L + ++ELF + +P + +F + G +ER
Sbjct: 245 PDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQV 304
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L+ + + N V+N+ ++ + + AF L + G P +Y V++ +
Sbjct: 305 LQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCR 364
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
++N E ++ V+ + PN + + + L ++G ++A+ +E M+ G
Sbjct: 365 AERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVT 424
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y L C G + AL + + KP ++YT L+ ++ + AA + +M
Sbjct: 425 YNALVNGFCVQGHIDSAL---ELFRSMPCKPNTITYTTLLTGLCNAERLDAAAELVAEML 481
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM------------------------AE 258
C PN+VT N++V + + G +EA++L ++M +E
Sbjct: 482 HRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSE 541
Query: 259 DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
D+ + KG V PD+ TF++++ + E R ++
Sbjct: 542 DALELLHGLVSKG-VSPDVITFSSIIGILSKEDRVEE 577
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 91/418 (21%), Positives = 173/418 (41%), Gaps = 81/418 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSL---PKKKFKTGTLE------RWDPRLE- 54
P+ V Y I + + G + + D+++ + S P T L+ RWD E
Sbjct: 210 PNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEEL 269
Query: 55 ----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
P+ V ++ ++ R E A VLQQ+ + + T +V+ +
Sbjct: 270 FAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICK 329
Query: 105 CGKYNLVYEFFRKVQKSYI--PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G+ + ++F + SY P+ ++Y ++ L R + ++A +++M R +
Sbjct: 330 QGRVDDAFKFLNNM-GSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEV 388
Query: 163 LYYDLARCLCSAGKCEEALMQMDKI----CKVA--------------------------- 191
+ LC G E+A+M ++++ C V
Sbjct: 389 TFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSM 448
Query: 192 -NKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEA 249
KP ++YT L+ ++ + AA + +M C PN+VT N++V + + G +EA
Sbjct: 449 PCKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEA 508
Query: 250 MKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA----CAAEKRWDDLELVYKRMLH 305
++L ++M E P++ T+NT+ D C++E D LEL++ ++
Sbjct: 509 IELVEQMMEHG------------CTPNLITYNTLFDGITKDCSSE---DALELLHG-LVS 552
Query: 306 HGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKER----FCNRLE 359
G+ + +I S+ +VE I HLA+ + P AL+ + C R E
Sbjct: 553 KGVSPDVITFSSIIGILSKEDRVE-EAIQMFHLAQDIGMRPKALVYNKILLGLCKRHE 609
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/249 (17%), Positives = 97/249 (38%), Gaps = 20/249 (8%)
Query: 7 TVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNA 66
V Y ++ GHI ++ RS+P K P+ + Y +L
Sbjct: 422 VVTYNALVNGFCVQGHIDSALELF---RSMPCK---------------PNTITYTTLLTG 463
Query: 67 CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIPN 125
++ + A ++ ++ + P+ T+ +++ G + E ++ + PN
Sbjct: 464 LCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPN 523
Query: 126 ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMD 185
+ Y L + + ++ +++A+ + + +G+ + + L + EEA+
Sbjct: 524 LITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFH 583
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNIQNAA-YIFNQMKNFCSPNLVTCNIMVKAYLEHG 244
+ +P + Y ++ I NA ++ + N C PN T I+++ G
Sbjct: 584 LAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAREG 643
Query: 245 LFEEAMKLF 253
L +EA L
Sbjct: 644 LLKEAQDLL 652
>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 859
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 71/340 (20%), Positives = 141/340 (41%), Gaps = 63/340 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V++ ++ + G + + ++I+ M +EPD+V YN+++
Sbjct: 262 PDVVSFNTVIHGFFKQGEVSKACNLINEM---------------VQKGVEPDVVTYNSIV 306
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV------ 118
+A + + + A VL+Q+ +G +P TY ++ G + + FRK+
Sbjct: 307 DALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLI 366
Query: 119 ------------------------------QKSYIPNALAYKVLVNTLWREGKTDEAVSA 148
K ++P+ ++Y +L++ EG+ + +
Sbjct: 367 PGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNL 426
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
M +GIV + + L G +EA++ ++ +P VV+Y+ LI A
Sbjct: 427 FHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCR 486
Query: 209 SGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
G + +A F+QM + PN V + ++ + HG +A +L EM
Sbjct: 487 MGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMS--------- 537
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
KG+ P+I F++++ + E R D V+ ++H G
Sbjct: 538 --KGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIG 575
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/311 (21%), Positives = 130/311 (41%), Gaps = 31/311 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ ++Y ++ +L +E D++ M + R PD+V +N V+
Sbjct: 225 PNAISYNTVIKSLCGDSRSQEALDMVQRM-------------AKEGGRCSPDVVSFNTVI 271
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML---ACGKYNLVYEFFRKVQKS 121
+ ++ + A ++ ++ Q+G +P TY +++ + A K LV + V K
Sbjct: 272 HGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLR--QMVDKG 329
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
P+ L Y +++ G E+ M +G++ + LC G+ ++A
Sbjct: 330 VEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAE 389
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAY 240
+ + P +VSY+ L+ G + +F+ M + N NI++ A+
Sbjct: 390 EIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAH 449
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ G+ +EAM +F EM V PD+ T++T++ A R D +
Sbjct: 450 AKRGMMDEAMLVFTEMQGQG------------VRPDVVTYSTLISAFCRMGRLADAMEKF 497
Query: 301 KRMLHHGLHFN 311
+M+ GL N
Sbjct: 498 SQMISIGLEPN 508
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 125/286 (43%), Gaps = 31/286 (10%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEFFRKV 118
+N +++A +R + A V +++ QG +P TY ++ G+ + + +F + +
Sbjct: 442 FNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMI 501
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD-LARCLCSAGKC 177
PN + Y L++ G +A V +M +GI +++ + LC+ G+
Sbjct: 502 SIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRV 561
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIM 236
+A + + + ++P +V++ LI G ++ A + + M + P++VT N +
Sbjct: 562 MDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTL 621
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
V Y + G ++ + LF+EM KK V P T++ +LD
Sbjct: 622 VSGYCKSGKIDDGLILFREMLH----------KK--VKPTTVTYSIVLDG---------- 659
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARAD 342
+ H G AK+ ++D+ A ++ +I + L R D
Sbjct: 660 ------LFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRND 699
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/297 (19%), Positives = 136/297 (45%), Gaps = 21/297 (7%)
Query: 67 CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS---YI 123
C ++ E +L ++ G P+A +Y V++ + + + +++ K
Sbjct: 202 CHAKRTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCS 261
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ +++ +++ +++G+ +A + + +M ++G+ Y + LC A ++A +
Sbjct: 262 PDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELV 321
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+ ++ +P ++YT +I SG+ + +A +F +M + P +VT N + + +
Sbjct: 322 LRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCK 381
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
HG ++A ++FQ M + +PD+ +++ +L A E R+ D+ ++
Sbjct: 382 HGRSKDAEEIFQYMTTKGH------------MPDLVSYSILLHGYATEGRFADMNNLFHS 429
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL----ARADRITPPALIKERFC 355
M G+ N +I ++ G ++ + + + R D +T LI FC
Sbjct: 430 MADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISA-FC 485
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/341 (19%), Positives = 142/341 (41%), Gaps = 32/341 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ + G + + + M S+ LEP+ VVY++++
Sbjct: 472 PDVVTYSTLISAFCRMGRLADAMEKFSQMISIG---------------LEPNTVVYHSLI 516
Query: 65 NA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSY 122
+ C+ + V + + + +P+ + ++ + G+ ++ F V
Sbjct: 517 HGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGD 576
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P + + L++ GK ++A ++ M GI Y L C +GK ++ L+
Sbjct: 577 RPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLI 636
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
++ KP V+Y+ ++ +G A +F++M + + ++ T I++K
Sbjct: 637 LFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLC 696
Query: 242 EHGLFEEAMKLFQEM-AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ L +EA+ LF ++ A D DI NT+++A +R ++ ++
Sbjct: 697 RNDLTDEAITLFHKLGAMDCKF-------------DITILNTVINALYKVRRREEANDLF 743
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
+ GL N + MI + + G VE + + + ++
Sbjct: 744 AAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKS 784
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/286 (19%), Positives = 111/286 (38%), Gaps = 52/286 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V + S+ G +++ F V+D+M S+ +EPD+V YN ++
Sbjct: 578 PTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVG---------------IEPDVVTYNTLV 622
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + + + + +++ + KP+ TY +V++ + G+ + + F ++ S
Sbjct: 623 SGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTA 682
Query: 125 NAL-AYKVLVNTLWREGKTDEAVS----------------------AVEDMERR------ 155
+ YK+L+ L R TDEA++ A+ + RR
Sbjct: 683 VDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDL 742
Query: 156 -------GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
G+V + + Y + L G EEA + K P +I+ L
Sbjct: 743 FAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQ 802
Query: 209 SGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253
G+I A Y +++ S T ++++ + G E +K
Sbjct: 803 KGDIVKAGYYMSKVDGTIISLEASTTSLLMSLFSSKGKHREQIKFL 848
>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 772
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 80/371 (21%), Positives = 149/371 (40%), Gaps = 32/371 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V++ S+ + G I E F + D ++ L P ++ YN ++
Sbjct: 353 PDIVSFNSLLYGYCRTGCISEAFLLFDELKC---------------RDLVPTVITYNTLI 397
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + A + +++ QG P TY +++ G ++ FF + + K
Sbjct: 398 HGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLK 457
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ AY + + T A S E+M G Y LC G EEA
Sbjct: 458 PDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDL 517
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + P V+YT +I + +G+++ A +FN+M +P++VT +++ A+
Sbjct: 518 LENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAA 577
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ + A F +M E S V ++ T+N +++ +R D+ +
Sbjct: 578 KQMLDLAFMYFSKMLEKS------------VPANVITYNAIINGLCMTRRMDEAYKYFDE 625
Query: 303 MLHHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLARADRITPPALIKERFCNRLENK 361
M G+ N + +I ++ G E L + E L R +I P + F L
Sbjct: 626 MEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDR--KIQPDSFTHSVFLKNLHRD 683
Query: 362 DYGSAISCLVS 372
A+ C+ S
Sbjct: 684 YQVHAVQCVES 694
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 115/282 (40%), Gaps = 27/282 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD+ N +L A V ++Q G KP+ TY +++ G+ +
Sbjct: 176 LLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQAL 235
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E ++Q + PN + Y VLVN L ++G+ ++A +E+M G+ SA Y L
Sbjct: 236 ELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGF 295
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C G EA ++++ P + +Y L+ + F+ M K+ +P++
Sbjct: 296 CQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDI 355
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMA------------------------EDSNHINRE 266
V+ N ++ Y G EA LF E+ + + + +E
Sbjct: 356 VSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKE 415
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+GL PDI+T+ +++ C + ML GL
Sbjct: 416 MTDQGL-FPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGL 456
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/382 (19%), Positives = 148/382 (38%), Gaps = 67/382 (17%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YP+ V Y + L + G +++ +I+ M + L YN +
Sbjct: 247 YPNDVTYNVLVNGLSKKGELEQAKGLIEEM---------------LNSGLNVSAYTYNPL 291
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-Y 122
+N ++ + AF +++++ + P+ +TY +M + + V F + KS +
Sbjct: 292 INGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKF 351
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ +++ L+ R G EA ++++ R +V + Y L LC G + AL
Sbjct: 352 TPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALR 411
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-------KNFC--------- 226
++ P + +YT L+ C G + A FN+M F
Sbjct: 412 LKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEM 471
Query: 227 --------------------SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
P+++T N+ V A + G FEEA L + M D
Sbjct: 472 KIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDG------ 525
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+IPD T+ ++++ V+ ML G+ + + +L + A
Sbjct: 526 ------LIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTY--TVLIHAHAA 577
Query: 327 KVELLEITWEHLARADRITPPA 348
K ++L++ + + ++ + PA
Sbjct: 578 K-QMLDLAFMYFSKMLEKSVPA 598
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 114/260 (43%), Gaps = 27/260 (10%)
Query: 29 VIDSMRSLPKKKFKTGTLERW---DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ 85
V+ SMR P+ + RW P + V+ A+L+ V A+WV++++
Sbjct: 91 VLHSMRIRPRVALR---FFRWVMAQPDFKESEFVFCAILDILVGNDLMHAAYWVMERV-- 145
Query: 86 QGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEA 145
S +G+V +V++A G + F + ++ +P+ ++ L E +A
Sbjct: 146 ----VSFEMHGVV-DVLIA-GHVXCLLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKA 199
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+ ME+ GI + Y + C G+ ++AL + ++ + P V+Y L+
Sbjct: 200 KNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNG 259
Query: 206 CLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
G ++ A + +M N + + T N ++ + + GLF EA L +EM +N
Sbjct: 260 LSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEM------VN 313
Query: 265 REYDKKGLVIPDIYTFNTML 284
R P + T+NT++
Sbjct: 314 RR------AFPTLSTYNTLM 327
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 75/162 (46%), Gaps = 14/162 (8%)
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
L+ DK+ + P V + +++ D + A ++ M+ F P +VT N M+ +
Sbjct: 165 LLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDS 224
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
Y + G ++A++L EM E + P+ T+N +++ + + + + +
Sbjct: 225 YCKEGRVDQALELLSEMQERGCY------------PNDVTYNVLVNGLSKKGELEQAKGL 272
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLAR 340
+ ML+ GL+ +A + +I + G VE ++ E + R
Sbjct: 273 IEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNR 314
>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Glycine max]
Length = 777
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 80/360 (22%), Positives = 140/360 (38%), Gaps = 41/360 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y S+ GQ GH F+ +D M K G ++P+++ Y +++
Sbjct: 428 PTVETYNSLINGYGQKGHFVRCFEFLDEMD-------KAG--------IKPNVISYGSLI 472
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
N + ++ A VL + +G P+A Y +++E + K + FF ++ +S I
Sbjct: 473 NCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGID 532
Query: 125 NAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
L Y L+N L R G+ +A M +G Y L + ++ L
Sbjct: 533 ATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISGYAKSVNTQKCLEL 592
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
DK+ + KP V ++ LI AC G + ++ P+ N M+ +Y E
Sbjct: 593 YDKMKILGIKPTVGTFHPLIYACRKEGVVTMDKMFQEMLQMDLVPDQFVYNEMIYSYAED 652
Query: 244 GLFEEAMKLFQEMAEDS------------------------NHINREYDKKGLVIPDIYT 279
G +AM L Q+M + H+ + KGLV P + T
Sbjct: 653 GNVMKAMSLHQQMVDQGVDCDKVTYNSLILAYLRDRRVSEIKHLVDDMKAKGLV-PKVDT 711
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
+N ++ K ++ Y+ M+ GL N ++I G + +I L+
Sbjct: 712 YNILIKGLCDLKDFNGAYFWYREMVERGLLLNVSMCYQLISGLREEGMLREAQIVSSELS 771
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 148/313 (47%), Gaps = 20/313 (6%)
Query: 45 TLERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
T E+ + R LEP+ + +N V++ + + A ++++ ++G P+ TY ++
Sbjct: 382 TTEQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYG 441
Query: 104 ACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G + +EF ++ K+ I PN ++Y L+N L ++ K +A + DM RG+ +A
Sbjct: 442 QKGHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAE 501
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+Y L CS K ++A D++ + +V+Y LI +G ++ A +F QM
Sbjct: 502 IYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQM 561
Query: 223 KN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
C+P+++T N ++ Y + ++ ++L+ +M K + P + TF+
Sbjct: 562 AGKGCNPDVITYNSLISGYAKSVNTQKCLELYDKM------------KILGIKPTVGTFH 609
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEH 337
++ AC E ++ +++ ML L + + MI + G V L + +
Sbjct: 610 PLIYACRKEGVV-TMDKMFQEMLQMDLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQ 668
Query: 338 LARADRITPPALI 350
D++T +LI
Sbjct: 669 GVDCDKVTYNSLI 681
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 76/357 (21%), Positives = 145/357 (40%), Gaps = 67/357 (18%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D PD V Y + A V K + F +++ + + G PS Y LV+ + +
Sbjct: 150 DSGTRPDAVAYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIK 209
Query: 110 LVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
+ F + +Q++ +PN + Y L++ + G +EA+ E M+ + + + Y L
Sbjct: 210 DARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLL 269
Query: 169 RCLCSAGKCEEA---LMQMD-----------------------------KICKVANKPLV 196
LC +G+ ++A L++M+ K ++ +
Sbjct: 270 NGLCGSGRVDDAREVLLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIRIDERTYC 329
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
+ GL + G I+ A + ++ +N +P+ ++ NI+V AY + G ++A+ ++
Sbjct: 330 ILLNGLCRV----GRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQ 385
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
M E +GL P+ TFNT++ D E +RM+ G+ + +
Sbjct: 386 MEE-----------RGLE-PNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETY 433
Query: 316 LRMILDASRAGKVELLEITWEHLARADR--ITPPALIKERFCNRLENKDYGSAISCL 370
+I + G +E L D+ I P + YGS I+CL
Sbjct: 434 NSLINGYGQKGH---FVRCFEFLDEMDKAGIKPNVI------------SYGSLINCL 475
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/349 (18%), Positives = 135/349 (38%), Gaps = 93/349 (26%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+TV Y ++ + G I+E + M+ + +E ++V YN++L
Sbjct: 225 PNTVTYNTLIDGYCKVGGIEEALGFKERMK---------------EQNVECNLVTYNSLL 269
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSA----------------------------TTYG 96
N + + A VL +++ G P TY
Sbjct: 270 NGLCGSGRVDDAREVLLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIRIDERTYC 329
Query: 97 LVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERR 155
+++ + G+ E K V+ P+ ++Y +LVN +EG +A+ E ME R
Sbjct: 330 ILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEER 389
Query: 156 GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA 215
G+ +P +++ +I ++G + +A
Sbjct: 390 GL-----------------------------------EPNRITFNTVISKFCETGEVDHA 414
Query: 216 -AYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI 274
++ ++ SP + T N ++ Y + G F + EM DK G +
Sbjct: 415 ETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEM-----------DKAG-IK 462
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDAS 323
P++ ++ ++++ +++ D E+V M+ G+ NA+ + M+++AS
Sbjct: 463 PNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIY-NMLIEAS 510
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 64/304 (21%), Positives = 111/304 (36%), Gaps = 67/304 (22%)
Query: 52 RLEPDIVVYNAV-------LNACVRRKQWEGAFWVLQQLK---QQGQKPSATTYGLVMEV 101
RL P+ N++ L C Q++ +Q+L+ +G+ +A + + +
Sbjct: 10 RLRPNSHFNNSISFFCSQSLTLCESDPQYQKRLQKVQKLETLISRGRTITARRF--LRSL 67
Query: 102 MLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
+L ++ + E V K + + L + V+ + DEA M + G V S
Sbjct: 68 LLTKTAFSSLSELHAHVSKPFFSDNLLWLCSVSKML-----DEATDLYSTMRKDGFVPST 122
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC-----LDSG------ 210
L R L + E+ L + +P V+Y +QA LD G
Sbjct: 123 RSVNRLLRTLVDSRHFEKTLAVFADVIDSGTRPDAVAYGKAVQAAVMLKDLDKGFELMKS 182
Query: 211 ------------------------NIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHG 244
I++A +F++M +N PN VT N ++ Y + G
Sbjct: 183 MVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMV-PNTVTYNTLIDGYCKVG 241
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
EEA+ + M E + N + T+N++L+ R DD V M
Sbjct: 242 GIEEALGFKERMKEQNVECN------------LVTYNSLLNGLCGSGRVDDAREVLLEME 289
Query: 305 HHGL 308
G
Sbjct: 290 GSGF 293
>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
Length = 757
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 126/308 (40%), Gaps = 31/308 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
DTV + + L A + E D++ +R +P+ PD+ Y+ +L
Sbjct: 127 DTVIFSQLLKGLCDAKRVDEATDIL--LRRMPEFG------------CTPDVFSYSILLK 172
Query: 66 ACVRRKQWEGAFWVLQQLKQQG---QKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKS 121
K+ E A +L + G P+ TY V++ + + F+ + K
Sbjct: 173 GFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKG 232
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
PN Y L++ GK E V +++M G+ +Y L LC G+C EA
Sbjct: 233 VRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEAR 292
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
D + + KP V Y L+ G++ + M N SP+ NIM AY
Sbjct: 293 NIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAY 352
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ + +EAM +F +M ++ + P+I T+ ++DA R DD L +
Sbjct: 353 AKKAMIDEAMHIFDKM------------RQQRLSPNIVTYGALIDALCKLGRVDDAVLKF 400
Query: 301 KRMLHHGL 308
+M+ G+
Sbjct: 401 NQMIDEGM 408
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 137/307 (44%), Gaps = 18/307 (5%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D P++V Y V++ + + + A V Q + +G +P+ TY ++ L+ GK+
Sbjct: 195 DGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWK 254
Query: 110 LVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
V + +++ + P+ Y VL++ L + G+ EA + + + R+GI + +Y L
Sbjct: 255 EVVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILL 314
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCS 227
+ G E +D + P + + A I A +IF++M+ S
Sbjct: 315 HGYATEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLS 374
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
PN+VT ++ A + G ++A+ F +M ++ + PDI+ F++++
Sbjct: 375 PNIVTYGALIDALCKLGRVDDAVLKFNQMIDEG------------MTPDIFVFSSLVYGL 422
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADR 343
+W+ E ++ +L G+ + ++ + R G+V L+++ R D
Sbjct: 423 CTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDV 482
Query: 344 ITPPALI 350
I+ L+
Sbjct: 483 ISYNTLV 489
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 116/284 (40%), Gaps = 29/284 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + + + I E + D MR RL P+IV Y A++
Sbjct: 340 PDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQ---------------QRLSPNIVTYGALI 384
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+A + + + A Q+ +G P + ++ + K+ E F +V I
Sbjct: 385 DALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIR 444
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + + L+ L REG+ EA ++ M R G+ Y L C G+ +EA
Sbjct: 445 LDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKL 504
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+D I + KP V+Y L+ + I +A +F +M +P++VT N ++ +
Sbjct: 505 LDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQ 564
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
G F EA +L+ M +N IYT+N +++
Sbjct: 565 TGRFSEAKELYLSMINSRTQMN------------IYTYNIIING 596
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/293 (18%), Positives = 114/293 (38%), Gaps = 49/293 (16%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD +Y +L+ + + A + + ++G KP+ T YG+++ G + ++
Sbjct: 268 LQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMH 327
Query: 113 EFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F V P+ + ++ ++ DEA+ + M ++ + + Y L L
Sbjct: 328 SFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDAL 387
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA----------------CLDSGNIQNA 215
C G+ ++A+++ +++ P + ++ L+ LD G +
Sbjct: 388 CKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDT 447
Query: 216 AYIFNQMKNFCS--------------------PNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
+ M N C P++++ N +V + G +EA KL
Sbjct: 448 VFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDV 507
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+ + PD T+NT+L +R DD +++ ML GL
Sbjct: 508 IVSIG------------LKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGL 548
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 80/213 (37%), Gaps = 17/213 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y +I L Q G E ++ SM + R + +I YN ++
Sbjct: 550 PDVVTYNTILHGLFQTGRFSEAKELYLSM---------------INSRTQMNIYTYNIII 594
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
N + + AF + L + + T +++ +L G+ + F + +
Sbjct: 595 NGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFATISAYGLV 654
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y ++ L +EG +E ME G ++ + L R L G A
Sbjct: 655 PDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDINRAGAY 714
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
+ K+ + N L S T ++ + G Q A
Sbjct: 715 LSKLDE-KNFSLEASTTSMLISIYSRGEYQQLA 746
>gi|357441367|ref|XP_003590961.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480009|gb|AES61212.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 573
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 110/245 (44%), Gaps = 18/245 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD + +NAV+ + +R + A L+ + G P A TY ++ + G NL F
Sbjct: 178 PDTITFNAVIGSLCKRGHLKSALEFLEGMSLSGCLPDAKTYNTIIRCIFDKGDPNLAVSF 237
Query: 115 FR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ +++K + P + Y +LV + + A+ +EDM R G +Y L
Sbjct: 238 WKDQLRKGFPPYLITYALLVELVCKHCGASRALEVLEDMAREGCCPDINMYNSLVNFSSK 297
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN---IQNAAYIFNQMKNFCSPNL 230
G ++ + + + +P VV+Y LI + G + + I N+ SP L
Sbjct: 298 QGNYKDTALVISNLLSHGMQPNVVTYNILIHSLSLHGYSDVVDDILKIMNETS--ISPTL 355
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT NI++ + + G + ++ L+ +M ++ PDI T+NT+L+A E
Sbjct: 356 VTYNILLNSLCKSGFLDRSISLYIKMVSEN------------CSPDIVTYNTLLNALCKE 403
Query: 291 KRWDD 295
D+
Sbjct: 404 GFIDE 408
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 98/204 (48%), Gaps = 2/204 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDI +YN+++N ++ ++ V+ L G +P+ TY +++ + G ++V +
Sbjct: 283 PDINMYNSLVNFSSKQGNYKDTALVISNLLSHGMQPNVVTYNILIHSLSLHGYSDVVDDI 342
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ + ++ I P + Y +L+N+L + G D ++S M Y L LC
Sbjct: 343 LKIMNETSISPTLVTYNILLNSLCKSGFLDRSISLYIKMVSENCSPDIVTYNTLLNALCK 402
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G +E++ + + P +V+Y +I +I++A ++ +M + P+ +T
Sbjct: 403 EGFIDESIQLLHSLSGTNCSPGLVTYNIVINGLARMRSIKSAKEMYGEMVEKGIDPDYIT 462
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEM 256
+V + FEEA+++F+ M
Sbjct: 463 HRTLVWGLCQVYQFEEAVEIFKVM 486
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 124/310 (40%), Gaps = 20/310 (6%)
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
S IP+ + L+ L R G+ D+ + M G V + + LC G + A
Sbjct: 140 SQIPHFPSCTNLIRGLIRIGQVDKGCKIMNMMVMSGGVPDTITFNAVIGSLCKRGHLKSA 199
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF--NQMKNFCSPNLVTCNIMVK 238
L ++ + P +Y +I+ D G+ N A F +Q++ P L+T ++V+
Sbjct: 200 LEFLEGMSLSGCLPDAKTYNTIIRCIFDKGD-PNLAVSFWKDQLRKGFPPYLITYALLVE 258
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+H A+++ ++MA + PDI +N++++ + + + D L
Sbjct: 259 LVCKHCGASRALEVLEDMAREG------------CCPDINMYNSLVNFSSKQGNYKDTAL 306
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRL 358
V +L HG+ N + +I S G ++++ + + I+P + N L
Sbjct: 307 VISNLLSHGMQPNVVTYNILIHSLSLHGYSDVVDDILK-IMNETSISPTLVTYNILLNSL 365
Query: 359 ENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNG 418
+ L VS + + + D IQLLH SL+ N
Sbjct: 366 CKSGFLDRSISLYIKMVSENCSPDIVTYNTLLNALCKEGFIDESIQLLH----SLSGTNC 421
Query: 419 SPYPVLQNLI 428
SP V N++
Sbjct: 422 SPGLVTYNIV 431
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 91/232 (39%), Gaps = 21/232 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLER---- 48
P+ V Y + +L G+ + D++ M L K+G L+R
Sbjct: 318 PNVVTYNILIHSLSLHGYSDVVDDILKIMNETSISPTLVTYNILLNSLCKSGFLDRSISL 377
Query: 49 ----WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
PDIV YN +LNA + + + +L L P TY +V+ +
Sbjct: 378 YIKMVSENCSPDIVTYNTLLNALCKEGFIDESIQLLHSLSGTNCSPGLVTYNIVINGLAR 437
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
E + + V+K P+ + ++ LV L + + +EAV + M R G
Sbjct: 438 MRSIKSAKEMYGEMVEKGIDPDYITHRTLVWGLCQVYQFEEAVEIFKVMHRIGQKIKGYA 497
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA 215
Y + LC K + A+ +D + K KP Y L+++ + G + A
Sbjct: 498 YKCVILGLCEQKKLDSAIQALDLMVKAQCKPDGKIYYTLLKSVANEGMVNEA 549
>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
Length = 614
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 116/257 (45%), Gaps = 25/257 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKE----LFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
P+ V Y ++ L + G +K+ L D+ID K GT PD+++Y
Sbjct: 294 PNVVTYGTLIDGLCKVGRVKDACAMLADMID----------KGGT---------PDLMIY 334
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ- 119
N ++N + Q + + +L++ G KP TY V+ + + + V+
Sbjct: 335 NMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKS 394
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ P+ + Y L++ L + GK DEA E M G Y L LC AG+ +E
Sbjct: 395 RGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDE 454
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A + + ++ ++ P ++Y LI+ D ++ A + +M ++ C+P+ VT NI++
Sbjct: 455 AHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIH 514
Query: 239 AYLEHGLFEEAMKLFQE 255
+ A+ L ++
Sbjct: 515 GMCRMERVDSAVVLLEQ 531
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/354 (20%), Positives = 147/354 (41%), Gaps = 38/354 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
DTV Y ++ L + + + ++ MR D EP++V YN++++
Sbjct: 78 DTVIYTALLSGLWKEKRLDQALAILHEMR---------------DHGCEPNVVTYNSLID 122
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV--QKSY- 122
+ + + A + + +K PS TY +++ + GK F+++ ++S+
Sbjct: 123 GLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHD 182
Query: 123 -----IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
PN + Y VL++ L + + +AV +E M+ RG Y L LC K
Sbjct: 183 MDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKV 242
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIM 236
A + ++ P +V+Y L+ + + +A + M C+PN+VT +
Sbjct: 243 AAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTL 302
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ + G ++A + +M DK G PD+ +N +++ + D+
Sbjct: 303 IDGLCKVGRVKDACAMLADM----------IDKGG--TPDLMIYNMLINGLCKADQVDES 350
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
+ +R + G+ + + +I R+ +++ E L R PP +I
Sbjct: 351 IALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLD--EACRLLLYVKSRGCPPDVI 402
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 131/311 (42%), Gaps = 35/311 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y + L +A D +D +L ++ G ++PD+V Y++V+
Sbjct: 329 PDLMIYNMLINGLCKA-------DQVDESIALLRRAVSGG--------IKPDVVTYSSVI 373
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
R + + A +L +K +G P Y +++ + GK + ++ + +
Sbjct: 374 YGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCD 433
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y L++ L + G+ DEA + M R G S Y L + LC +EA+
Sbjct: 434 ADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIEL 493
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC------SPNLVTCNIMV 237
++++ + P V+Y LI + +A + Q K C + + + + ++
Sbjct: 494 VEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLI 553
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ G EA+ FQEM ++ VIPD T++ +L+ K +L
Sbjct: 554 DGLCKAGRVAEALDYFQEMIDNG------------VIPDHITYSILLEGLKKSKDLHELR 601
Query: 298 -LVYKRMLHHG 307
LV +M+ G
Sbjct: 602 HLVLDQMVQLG 612
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 106/252 (42%), Gaps = 43/252 (17%)
Query: 51 PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
P +PD+ Y A+L R + + A +++ + P+ ++++ + +
Sbjct: 3 PICQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSID 62
Query: 111 VYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
FR +Q S I + + Y L++ LW+E + D+A++ + +M G
Sbjct: 63 ALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHG------------- 109
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSP 228
CE P VV+Y LI + A +F MK+ CSP
Sbjct: 110 -------CE---------------PNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSP 147
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-C 287
++VT N ++ G E AM LFQEM + R +D P++ T++ ++D C
Sbjct: 148 SMVTYNTLLDGLFRTGKLERAMALFQEMLD-----RRSHDMDDRCSPNVITYSVLIDGLC 202
Query: 288 AAEKRWDDLELV 299
A + +EL+
Sbjct: 203 KANRVSQAVELL 214
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/327 (20%), Positives = 136/327 (41%), Gaps = 36/327 (11%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ-------KPSATTYGLVMEVMLACGK 107
P +V YN +L+ R + E A + Q++ + P+ TY ++++ + +
Sbjct: 147 PSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANR 206
Query: 108 YNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
+ E ++ + P+ + Y +LV+ L +E K A + +M G V + Y
Sbjct: 207 VSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNS 266
Query: 167 LARCLCSAGKCEEALMQM-DKICKVANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMKN 224
L LC A + +AL M D C+ P VV+Y LI G +++A A + + +
Sbjct: 267 LLHGLCRARRVSDALALMRDMTCR-GCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDK 325
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED------------------SNHINRE 266
+P+L+ N+++ + +E++ L + SN ++
Sbjct: 326 GGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEA 385
Query: 267 -----YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILD 321
Y K PD+ ++T++D + D+ +Y+ M G + + +I
Sbjct: 386 CRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDG 445
Query: 322 ASRAGKVELLEITWEHLARADRITPPA 348
+AG+V+ + + R TPP+
Sbjct: 446 LCKAGRVDEAHLLLARMVRMG--TPPS 470
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 62/144 (43%), Gaps = 21/144 (14%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M + P T+ Y S+ L H+ E ++++ M ER + P V Y
Sbjct: 465 MGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEM-------------ERSN--CAPSAVTY 509
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQ-----GQKPSATTYGLVMEVMLACGKYNLVYEFF 115
N +++ R ++ + A +L+Q K + G Y +++ + G+ ++F
Sbjct: 510 NILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYF 569
Query: 116 RK-VQKSYIPNALAYKVLVNTLWR 138
++ + IP+ + Y +L+ L +
Sbjct: 570 QEMIDNGVIPDHITYSILLEGLKK 593
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 15/148 (10%)
Query: 193 KPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAM 250
+P V +Y L++ G I A F++M KN PN+ C+I++ + +A+
Sbjct: 6 QPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNL-VPNVFLCSILIDGLCKAKRSIDAL 64
Query: 251 KLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHF 310
+ F+ M ++ D + +L EKR D + M HG
Sbjct: 65 RCFRAMQGSG------------IVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEP 112
Query: 311 NAKRHLRMILDASRAGKVELLEITWEHL 338
N + +I + + + + +EH+
Sbjct: 113 NVVTYNSLIDGLCKNNEPDRAQELFEHM 140
>gi|159464329|ref|XP_001690394.1| hypothetical protein CHLREDRAFT_114572 [Chlamydomonas reinhardtii]
gi|158279894|gb|EDP05653.1| predicted protein [Chlamydomonas reinhardtii]
Length = 287
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 127/271 (46%), Gaps = 14/271 (5%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK- 117
Y +++ C +Q A ++ +++ +G + TY +M V + + +L + +++
Sbjct: 2 TYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQM 61
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+++ PN + Y +L++ + KT E + R GI Y + +G+
Sbjct: 62 LEEGCSPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSGQP 121
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIM 236
E+AL +K+ KP +YT LI A G ++ A IF M + C N++T + +
Sbjct: 122 EQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYSSL 181
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ A + G +E A++LF +M +++ P++ T+N+++ AC+ W+
Sbjct: 182 ISACEKAGRWEMALELFSKMHKEN------------CKPNVVTYNSLIAACSHGGHWEKA 229
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
++++M G ++ + +I R G+
Sbjct: 230 SELFEQMQTQGCKPDSITYCGLITAYERGGQ 260
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 111/260 (42%), Gaps = 49/260 (18%)
Query: 26 LFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ 85
L DV S R +++ L R ++ ++ YN V++AC + Q E A V +++
Sbjct: 76 LIDVEASKRKTTERRRLAVALVR--SGIQAEVRTYNTVISACNKSGQPEQALKVYEKMLA 133
Query: 86 QGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEA 145
G KPSATTY L++ ++G+ ++A
Sbjct: 134 AGVKPSATTY----------------------------------TALISAYGKKGQVEKA 159
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+ DM RRG + Y L AG+ E AL K+ K KP VV+Y LI A
Sbjct: 160 LDIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAA 219
Query: 206 CLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
C G+ + A+ +F QM+ C P+ +T ++ AY G + A+K F++M H
Sbjct: 220 CSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQSQGCH-- 277
Query: 265 REYDKKGLVIPDIYTFNTML 284
PD FN+++
Sbjct: 278 ----------PDAAVFNSLM 287
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 21/150 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL-------ERWDPRLE- 54
P Y ++ G+ G +++ D+ M R + +L RW+ LE
Sbjct: 138 PSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYSSLISACEKAGRWEMALEL 197
Query: 55 ----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
P++V YN+++ AC WE A + +Q++ QG KP + TY ++
Sbjct: 198 FSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYER 257
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLV 133
G++ + F ++Q P+A + L+
Sbjct: 258 GGQWRRALKAFEQMQSQGCHPDAAVFNSLM 287
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
V +Y+ L+ C+ + + A ++ QM + CSPNLVT NI++ E +L
Sbjct: 35 VHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILIDVEASKRKTTERRRLAV 94
Query: 255 EMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKR 314
+ + ++ T+NT++ AC + + VY++ML G+ +A
Sbjct: 95 ALVRSG------------IQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATT 142
Query: 315 HLRMILDASRAGKVE 329
+ +I + G+VE
Sbjct: 143 YTALISAYGKKGQVE 157
>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Vitis vinifera]
Length = 665
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 133/311 (42%), Gaps = 29/311 (9%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P V Y + L I E + +MR+ +G L P++ YN +
Sbjct: 225 FPTVVIYTILIRGLCGESRISEAESMFRTMRN-------SGML--------PNLYTYNTM 269
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SY 122
++ + + A + Q++ G P+ T+G++++ + + +F +
Sbjct: 270 MDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGV 329
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+PN Y L++ + G EA+S ++E+ I+ Y L + LC + EEA
Sbjct: 330 VPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADG 389
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ ++ K P V+Y LI GN++ A + +QM + PN++T + ++ Y
Sbjct: 390 LLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYC 449
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G E AM L+ EM KGL +PD+ + ++D + + ++K
Sbjct: 450 KAGKMEAAMGLYTEMV-----------IKGL-LPDVVAYTALIDGHFKDGNTKEAFRLHK 497
Query: 302 RMLHHGLHFNA 312
M GLH N
Sbjct: 498 EMQEAGLHPNV 508
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 135/310 (43%), Gaps = 37/310 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ + G + F + D M + KK F P +V+Y ++
Sbjct: 191 PNVVTYGTLIDGCCRQGDFLKAFRLFDEM--IEKKIF-------------PTVVIYTILI 235
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ A + + ++ G P+ TY +M+ E +++ + +
Sbjct: 236 RGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLL 295
Query: 124 PNALAYKVLVNTLWREGKTDEAVSA---VEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
PN + + +L++ L KTDE VSA + DM G+V + +Y L C AG EA
Sbjct: 296 PNVVTFGILIDGLC---KTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEA 352
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVK 238
L +I K P V +Y+ LI+ ++ A + +M K F PN VT N ++
Sbjct: 353 LSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFL-PNAVTYNTLID 411
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
Y + G E+A+++ +M E KG + P+I TF+T++D + +
Sbjct: 412 GYCKEGNMEKAIEVCSQMTE-----------KG-IEPNIITFSTLIDGYCKAGKMEAAMG 459
Query: 299 VYKRMLHHGL 308
+Y M+ GL
Sbjct: 460 LYTEMVIKGL 469
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 97/215 (45%), Gaps = 19/215 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ V YN +++ + E A V Q+ ++G +P+ T+ +++ GK
Sbjct: 401 PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGL 460
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ + V K +P+ +AY L++ +++G T EA ++M+ G+ + L LC
Sbjct: 461 YTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCK 520
Query: 174 AGKCEEALM-------------QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
G+ +A+ + +++ + P V YT LIQ G I A+ F+
Sbjct: 521 DGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFS 580
Query: 221 QMKNFCS---PNLVTCNIMVKAYLEHGLFEEAMKL 252
M+ CS P++ TC ++++ + + M L
Sbjct: 581 DMR--CSGLRPDVFTCIVIIQGHFRAMHLRDVMML 613
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/252 (19%), Positives = 95/252 (37%), Gaps = 50/252 (19%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+I VYN +++ + A + ++++ P TY ++++ + +
Sbjct: 331 PNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGL 390
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++++K ++PNA+ Y L++ +EG ++A+ M +GI + + L C
Sbjct: 391 LQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCK 450
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM----------- 222
AGK E A+ ++ P VV+YT LI GN + A + +M
Sbjct: 451 AGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFT 510
Query: 223 --------------------------------------KNFCSPNLVTCNIMVKAYLEHG 244
++ CSPN V +++ G
Sbjct: 511 LSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDG 570
Query: 245 LFEEAMKLFQEM 256
+A K F +M
Sbjct: 571 RIFKASKFFSDM 582
>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 859
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 136/331 (41%), Gaps = 36/331 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y + LG+ G + + +V D M S + + VY AV+
Sbjct: 134 PNEHIYTIMITLLGREGLLDKCREVFDEMPSNGVAR---------------TVYVYTAVI 178
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE----FFRKVQK 120
NA R Q+ + +L +KQ+ PS TY V+ AC + L +E F +++
Sbjct: 179 NAYGRNGQFHASLELLNGMKQERVSPSILTYNTVIN---ACARGGLDWEGLLGLFAEMRH 235
Query: 121 SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
I P+ + Y L+ G DEA M GIV Y L + + E+
Sbjct: 236 EGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEK 295
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVK 238
+ ++ N P + SY L++A + G+I+ A +F QM+ C N T ++++
Sbjct: 296 VSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLN 355
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
Y +HG +++ +F EM + PD T+N ++ + ++
Sbjct: 356 LYGKHGRYDDVRDIFLEMKVSNTD------------PDAGTYNILIQVFGEGGYFKEVVT 403
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
++ M+ + N + + +I + G E
Sbjct: 404 LFHDMVEENVEPNMETYEGLIFACGKGGLYE 434
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 115/254 (45%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +Y + + G IKE DV M++ G + + Y+ +L
Sbjct: 310 PDITSYNVLLEAYAELGSIKEAMDVFRQMQA-------AGCV--------ANAATYSVLL 354
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + +++ + ++K P A TY ++++V G + V F V+++
Sbjct: 355 NLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVE 414
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y+ L+ + G ++A + M +GIV S+ Y + A EEAL+
Sbjct: 415 PNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVV 474
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + +V + P V +Y I A G + A I ++M ++ ++ + N ++KA+ +
Sbjct: 475 FNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQ 534
Query: 243 HGLFEEAMKLFQEM 256
G +EEA+K + EM
Sbjct: 535 GGQYEEAVKSYVEM 548
>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
Length = 745
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 140/313 (44%), Gaps = 42/313 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT +Y + L AG ++E ++ + M K G L+PD+V Y V
Sbjct: 218 PDTYSYNILIHGLIVAGSMEEALELTNDME-------KQG--------LQPDMVTYKIVA 262
Query: 65 NACVRRKQWEGAFWVLQQ-LKQQGQKPSATTYGLVMEVMLACGKYNL--VYEFFRK---- 117
GA ++Q+ L +G KP TY +L CG + + E R
Sbjct: 263 KGFHLLGLMSGAREIIQKMLTDEGLKPDLVTY-----TVLICGHCQMGNIEEALRLRRDL 317
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+ + N + Y VL+++L + G+ DEA+ + +ME + Y L LC GK
Sbjct: 318 LSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKV 377
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ--MKNFCSPNLVTCNI 235
++A+ ++C P +++G+++ + G + +A F+ M N P++ NI
Sbjct: 378 QQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNL-RPDVTLYNI 436
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
M+ Y++ G EEA++L++ + + + + P I TFN+++ ++ +
Sbjct: 437 MIDGYVKLGDVEEAVRLYKRLRDKA------------ITPSIVTFNSLIYGFCKNRKVVE 484
Query: 296 LELVYKRMLHHGL 308
+ + + HGL
Sbjct: 485 ARRLLESIKLHGL 497
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 103/212 (48%), Gaps = 4/212 (1%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D + P IV +N+++ + ++ A +L+ +K G +PSA TY +M G N
Sbjct: 459 DKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNIN 518
Query: 110 LVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
++E ++ K P + Y V++ L ++ K +E+V +EDM +G+ Y +
Sbjct: 519 KLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTII 578
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP 228
+C C A +A +D + +P +Y LI G++++A + +++ +
Sbjct: 579 QCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDR-NI 637
Query: 229 NL--VTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
NL V M+KA+ G + A+K+F +M E
Sbjct: 638 NLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVE 669
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/363 (21%), Positives = 147/363 (40%), Gaps = 66/363 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + Q G+I+E ++R L + +G + ++++Y+ +L
Sbjct: 289 PDLVTYTVLICGHCQMGNIEE------ALR-LRRDLLSSG--------FQLNVILYSVLL 333
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
++ +R Q + A +L +++ +P TY +++ + GK + ++++ + I
Sbjct: 334 SSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIF 393
Query: 124 PNALA-----------------------------------YKVLVNTLWREGKTDEAVSA 148
PN+ A Y ++++ + G +EAV
Sbjct: 394 PNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRL 453
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+ + + I S + L C K EA ++ I +P V+YT L+ A +
Sbjct: 454 YKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCE 513
Query: 209 SGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
GNI + +M P +VT +++K + EE+++L ++M
Sbjct: 514 EGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMR---------- 563
Query: 268 DKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
KGL PD T+NT++ C A+ EL+ ML H L + +I R G
Sbjct: 564 -AKGLA-PDQITYNTIIQCFCKAKDMRKAFELL-DDMLIHNLEPTPATYNVLIDGLCRYG 620
Query: 327 KVE 329
VE
Sbjct: 621 DVE 623
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 115/256 (44%), Gaps = 15/256 (5%)
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-S 121
+++ + ++ A L+Q + PS ++ +M G ++ FF + K
Sbjct: 156 IVDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFCMMLKYG 215
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+P+ +Y +L++ L G +EA+ DME++G+ Y +A+ G A
Sbjct: 216 ILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAR 275
Query: 182 MQMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYI-FNQMKNFCSPNLVTCNIMVKA 239
+ K+ KP +V+YT LI GNI+ A + + + + N++ ++++ +
Sbjct: 276 EIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSS 335
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ G +EA++L EM ++N++ PD+ T++ ++ + + +
Sbjct: 336 LCKRGQVDEALQLLYEM--EANNLQ----------PDLVTYSILIHGLCKQGKVQQAIQL 383
Query: 300 YKRMLHHGLHFNAKRH 315
YK M + + N+ H
Sbjct: 384 YKEMCFNRIFPNSFAH 399
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 129/299 (43%), Gaps = 20/299 (6%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
+V + +L V + A +VL ++K+Q +PS TY ++ +++++ +
Sbjct: 84 LVLDQMLQEEVASRMVHDALFVLVKMKEQNLRPSIQTYN---SLLYNLRHTDIMWDVYND 140
Query: 118 VQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
++ S P +A ++V+ L + + +AV + + + S + + C G
Sbjct: 141 IKDSGTPQSARTSSIIVDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGL 200
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNI 235
+ A + K P SY LI + +G+++ A + N M K P++VT I
Sbjct: 201 ADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKI 260
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
+ K + GL A ++ Q+M D +GL PD+ T+ ++ ++
Sbjct: 261 VAKGFHLLGLMSGAREIIQKMLTD----------EGLK-PDLVTYTVLICGHCQMGNIEE 309
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLA---RADRITPPALI 350
+ + +L G N + ++ + G+V E L++ +E A + D +T LI
Sbjct: 310 ALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILI 368
>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
Length = 1128
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 119/262 (45%), Gaps = 14/262 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD V YN++++ + + + + +++K +P TY ++ GK
Sbjct: 164 LIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGL 223
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
EF+R++++S + PN ++Y LV+ +E +A+ DM R G V + Y L
Sbjct: 224 EFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDAN 283
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C G +A +++ +V + VV+YT LI D+ ++ A +F +M PNL
Sbjct: 284 CKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNL 343
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+ N ++ +++ + A++L E+ K + PD+ + T +
Sbjct: 344 ASYNALIHGFVKAKNMDRALELLNEL------------KGRGIQPDLLLYGTFIWGLCGL 391
Query: 291 KRWDDLELVYKRMLHHGLHFNA 312
++ + ++V M +G+ N
Sbjct: 392 EKIEAAKVVMNEMQENGIKANT 413
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/292 (20%), Positives = 127/292 (43%), Gaps = 19/292 (6%)
Query: 47 ERWDPR--LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E W R P V++A+ + + E A ++K+ P + ++
Sbjct: 51 ELWSTRNVCVPGFGVFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAK 110
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK + V FF+ + P Y ++++ +W+EG + A E+M+ RG++
Sbjct: 111 LGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVT 170
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + G+ ++ + +++ ++ +P V++Y LI SG + + +MK
Sbjct: 171 YNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMK 230
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ PN+V+ + +V A+ + + ++A+K + +M + +P+ +T+ +
Sbjct: 231 QSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGH------------VPNEFTYTS 278
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI---LDASRAGKVELL 331
++DA D + ML G+ +N + +I DA R + E L
Sbjct: 279 LVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKL 330
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/374 (19%), Positives = 139/374 (37%), Gaps = 65/374 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV Y S+ G+ G + + + M+S+ EPD++ YN+++
Sbjct: 166 PDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMS---------------CEPDVITYNSLI 210
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
N + + +++KQ G KP+ +Y +++ +F+ +++ ++
Sbjct: 211 NCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHV 270
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y LV+ + G +A +M G+ + Y L LC A + +EA
Sbjct: 271 PNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKL 330
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-------------------- 223
K+ P + SY LI + + N+ A + N++K
Sbjct: 331 FGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCG 390
Query: 224 ----------------NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
N N + ++ AY + G E + L +EM E + +
Sbjct: 391 LEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVT--- 447
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH-GLHFNAKRHLRMILDASRAG 326
+ TF ++D K + RM + GL NA + MI +
Sbjct: 448 ---------VVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKEN 498
Query: 327 KVELLEITWEHLAR 340
+V+ +E +A+
Sbjct: 499 QVKAATTLFEQMAQ 512
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/209 (19%), Positives = 94/209 (44%), Gaps = 3/209 (1%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + ++ + ++Y +++A + +L+++++ + + T+ ++++ +
Sbjct: 403 EMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNK 462
Query: 107 KYNLVYEFFRKVQKSY--IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
+ ++F ++ + PNA Y +++ L +E + A + E M + G+V Y
Sbjct: 463 LVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAY 522
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-K 223
L G EAL DK+ ++ K +++YT L+ +Q A +M
Sbjct: 523 TSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIG 582
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKL 252
P+ V C ++K + E G +EA+ L
Sbjct: 583 EEILPDEVLCIGVLKKHYELGCIDEAVGL 611
>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 840
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 160/372 (43%), Gaps = 41/372 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +Y + L AG + E D+ + M + LEPD+V YN +
Sbjct: 314 PDAYSYNILIHGLCIAGSMGEALDLKNDME---------------NHGLEPDMVTYNILA 358
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
GA+ ++Q++ +G P+ TY +++ G + +++ + +
Sbjct: 359 KGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQ 418
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ ++ VL+ +L + + D A +ME G+ Y L LC G+ ++A++
Sbjct: 419 LSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILL 478
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+K+C P + + ++ + G I A F+ + + S +++ NIM+ Y++
Sbjct: 479 YEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYIK 538
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G EA+KL++++ E KG + P I TFN+++ ++ +
Sbjct: 539 RGNTREAVKLYKQLGE-----------KG-ISPTIVTFNSLMYGFCINRKLSQARRLLDT 586
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE-LLEITWEHLARA---DRITPPALIK------- 351
+ HGL NA + ++ G ++ LLE+ E A+A IT +IK
Sbjct: 587 IKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWK 646
Query: 352 -ERFCNRLENKD 362
+ C LE+ D
Sbjct: 647 LQESCQLLEDMD 658
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/337 (19%), Positives = 145/337 (43%), Gaps = 34/337 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKE---LFDVIDSMRSLPKKKFK----TGTLERWD------- 50
PD + Y ++ L + G +++ L++ + S R +P G E+
Sbjct: 454 PDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMY 513
Query: 51 ------PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L DI++YN +++ ++R A + +QL ++G P+ T+ +M
Sbjct: 514 FDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCI 573
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
K + ++ + PNA+ Y L+N EG + + +M+ + I +
Sbjct: 574 NRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHIT 633
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y + + LC K +E+ ++ + V P VSY +IQA + +++ A ++++M
Sbjct: 634 YTVVIKGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKML 693
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ P VT NI++ + +G ++A L + ++N+ Y + T
Sbjct: 694 LHNLEPTSVTYNILINGFCVYGDLKDADNLLVSLQNRKVNLNK------------YAYTT 741
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
++ A A+ D + +++M+ G + + + +I
Sbjct: 742 IIKAHCAKGDVDKAVVYFRQMVEKGFEVSIRDYSAVI 778
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 120/259 (46%), Gaps = 16/259 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD++ Y+ +++ ++ + + A + +++ P++ +G ++ + GK +
Sbjct: 452 LRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQAR 511
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+F + S + + + Y ++++ + G T EAV + + +GI + + L
Sbjct: 512 MYFDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGF 571
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C K +A +D I +P V+YT L+ + GN+Q+ + ++MK P
Sbjct: 572 CINRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTH 631
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAA 289
+T +++K + +E+ +L ++M D GL PD ++NT++ A C A
Sbjct: 632 ITYTVVIKGLCKQWKLQESCQLLEDM-----------DAVGLT-PDQVSYNTIIQAFCKA 679
Query: 290 EKRWDDLELVYKRMLHHGL 308
+L Y +ML H L
Sbjct: 680 RDMRKAFQL-YDKMLLHNL 697
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 126/282 (44%), Gaps = 14/282 (4%)
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKS 121
V++ R+ +++ A Q + + +PS ++ +M G ++ FF ++
Sbjct: 252 VVDGLCRQSRFQDAVLFFQDTEGKEFQPSVVSFNTIMSRYCKLGFVDVAKSFFCMMLKHG 311
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+P+A +Y +L++ L G EA+ DME G+ Y LA+ G A
Sbjct: 312 LLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGLEPDMVTYNILAKGFRLLGLINGAW 371
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
+ K+ P +V+YT LI GN++ A ++ +M + ++++ +++ +
Sbjct: 372 NIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISSTVLLGSL 431
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ + A KLF EM + GL PD+ T++T++ + L+Y
Sbjct: 432 CKSRQVDVAFKLFCEM-----------EANGLR-PDLITYSTLIHGLCKQGEVQQAILLY 479
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARAD 342
++M + + N+ H +++ GK+ + +++L ++
Sbjct: 480 EKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSN 521
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 40/210 (19%), Positives = 80/210 (38%), Gaps = 26/210 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS-------LPKKKFKTGTLERWDPR----- 52
P+ V Y ++ + G+++ L +++ M++ + G ++W +
Sbjct: 594 PNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQL 653
Query: 53 --------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L PD V YN ++ A + + AF + ++ +P++ TY +++
Sbjct: 654 LEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCV 713
Query: 105 CGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G +Q + N AY ++ +G D+AV M +G S
Sbjct: 714 YGDLKDADNLLVSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAVVYFRQMVEKGFEVSIRD 773
Query: 164 YYDL-----ARCLCSAGKCEEALMQMDKIC 188
Y + RCL + K +M D +C
Sbjct: 774 YSAVIGRLCKRCLVTEAKYFFCMMLSDGVC 803
>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 584
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 136/302 (45%), Gaps = 28/302 (9%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+P I+ Y ++ A R K++ +L ++++ G KP + + ++ GK + +
Sbjct: 75 KPTIITYTTLVAALTRLKRFNSIPSLLSKVEENGVKPDSILFNAMINAFSDSGKVHEAMK 134
Query: 114 FFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD-LARCL 171
FRK+++ P + L+ G+ EA+ +E M + G V Y+ L +
Sbjct: 135 IFRKMKECGCKPTTSTFNTLIKGFGIVGRPHEAMKLLEMMIQDGNVKPNERTYNILIQAW 194
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK---NFCSP 228
C+ + EEA M K+ +P +V+Y L +A +G NA + +M+ N P
Sbjct: 195 CTKNELEEAWNVMHKMVNSGMQPDIVTYNTLARAFAQNGETDNAERLILKMQQYNNKVKP 254
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN--------REY----DKKGL---- 272
N TC I+++ Y + G EA++ +M E H N + Y D G+
Sbjct: 255 NERTCGIIIRGYCKEGNMTEALRFLYKMKELGVHPNPVVFNSLIKGYLDITDTDGVEEAL 314
Query: 273 -------VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRA 325
+ PD+ T++T+++A ++ D+ E ++ M+ + + + + + RA
Sbjct: 315 TLMEEFGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILAKGYVRA 374
Query: 326 GK 327
G+
Sbjct: 375 GQ 376
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/378 (20%), Positives = 151/378 (39%), Gaps = 46/378 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSL---------------------PKKKFKT 43
PD++ + ++ +G + E + M+ P + K
Sbjct: 111 PDSILFNAMINAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTLIKGFGIVGRPHEAMKL 170
Query: 44 GTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
+ D ++P+ YN ++ A + + E A+ V+ ++ G +P TY +
Sbjct: 171 LEMMIQDGNVKPNERTYNILIQAWCTKNELEEAWNVMHKMVNSGMQPDIVTYNTLARAFA 230
Query: 104 ACGKYNLVYEFFRKVQK---SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
G+ + K+Q+ PN +++ +EG EA+ + M+ G+ +
Sbjct: 231 QNGETDNAERLILKMQQYNNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMKELGVHPN 290
Query: 161 AALYYDLARC---LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217
++ L + + EEAL M++ KP VV+Y+ ++ A SG + N
Sbjct: 291 PVVFNSLIKGYLDITDTDGVEEALTLMEEF---GIKPDVVTYSTIMNAWSSSGLMDNCEE 347
Query: 218 IFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
IF+ M K P++ +I+ K Y+ G ++A L M K GL +
Sbjct: 348 IFDDMVKAEIEPDIQAYSILAKGYVRAGQPDKAEALLNSMT-----------KYGLQ-AN 395
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMIL---DASRAGKVELLEI 333
+ F T++ A + D +Y++M G N K + +I +A + K E L +
Sbjct: 396 VVIFTTIISGWCAAGKMDCALRLYEKMNEMGTPLNLKTYETLIWGYGEAKQPWKAEELLV 455
Query: 334 TWEHLARADRITPPALIK 351
T E A ++ L++
Sbjct: 456 TMEESGVAPEMSTIELVQ 473
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 12/179 (6%)
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA 191
L++TL R+GK EAV+ + G + Y L L + + K+ +
Sbjct: 49 LMSTLIRKGKPHEAVTIFNSLTEEGHKPTIITYTTLVAALTRLKRFNSIPSLLSKVEENG 108
Query: 192 NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAM 250
KP + + +I A DSG + A IF +MK C P T N ++K + G EAM
Sbjct: 109 VKPDSILFNAMINAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTLIKGFGIVGRPHEAM 168
Query: 251 KLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH 309
KL + M +D N V P+ T+N ++ A + ++ V +M++ G+
Sbjct: 169 KLLEMMIQDGN-----------VKPNERTYNILIQAWCTKNELEEAWNVMHKMVNSGMQ 216
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 84/212 (39%), Gaps = 15/212 (7%)
Query: 98 VMEVMLACGK-YNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
+M ++ GK + V F ++ + P + Y LV L R + + S + +E G
Sbjct: 49 LMSTLIRKGKPHEAVTIFNSLTEEGHKPTIITYTTLVAALTRLKRFNSIPSLLSKVEENG 108
Query: 157 IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
+ + L+ + +GK EA+ K+ + KP ++ LI+ G A
Sbjct: 109 VKPDSILFNAMINAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTLIKGFGIVGRPHEAM 168
Query: 217 YIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI 274
+ M PN T NI+++A+ EEA + +M
Sbjct: 169 KLLEMMIQDGNVKPNERTYNILIQAWCTKNELEEAWNVMHKMVNSGMQ------------ 216
Query: 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306
PDI T+NT+ A A D+ E + +M +
Sbjct: 217 PDIVTYNTLARAFAQNGETDNAERLILKMQQY 248
>gi|297847648|ref|XP_002891705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337547|gb|EFH67964.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 823
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 143/345 (41%), Gaps = 55/345 (15%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
+RW P+IV YN ++ + E A V ++LK +G P+ T+G ++ G
Sbjct: 230 DRWGKGCVPNIVFYNTIIGGYCKLGDIENAKLVFKELKLKGFMPTLETFGTMINGFCKKG 289
Query: 107 KY-----------------------NLVYEFFRK-------------VQKSYIPNALAYK 130
+ N++ +R V P+ Y
Sbjct: 290 DFVASDRLLEEVKERGLRVCVWFLNNIIDAKYRHGFKVDPAESIRWIVANDCKPDIATYN 349
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
+L+N L +EGK + A +++ ++G++ + Y L + C + + + A + ++ +
Sbjct: 350 ILINRLCKEGKKEVAAGLLDEASKKGLILTNLSYAPLIQAYCKSKEYDIASKLLLQLAER 409
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAYI-FNQMKNFCSPNLVTCNIMVKAYLEHGLFEEA 249
KP +V+Y LI + SG++ +A + + SP+ N+++ + G F A
Sbjct: 410 GCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPA 469
Query: 250 MKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH 309
LF EM + S ++PD Y + T++D +D+ V+ + G+
Sbjct: 470 KLLFSEMLDRS------------ILPDAYVYATLIDGFIRSGDFDEARKVFTLSVEKGVK 517
Query: 310 FNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERF 354
+ H MI R+G ++ E LA +R+ L+ ++F
Sbjct: 518 VDVVHHNAMIKGFCRSGMLD------EALACMNRMNEEHLVPDKF 556
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 108/239 (45%), Gaps = 14/239 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PDIV Y +++ V + A + +L +G P A Y ++M + G++
Sbjct: 412 KPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKL 471
Query: 114 FFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F + + +S +P+A Y L++ R G DEA +G+ + + + C
Sbjct: 472 LFSEMLDRSILPDAYVYATLIDGFIRSGDFDEARKVFTLSVEKGVKVDVVHHNAMIKGFC 531
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
+G +EAL M+++ + P +Y+ +I + ++ A IF M KN C PN+V
Sbjct: 532 RSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRDMEKNKCKPNVV 591
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T ++ + G F A + F+EM ++P++ T+ T++ + A E
Sbjct: 592 TYTSLINGFCCQGDFSLAEETFKEMQSRD------------LVPNVVTYTTLIRSFAKE 638
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/293 (20%), Positives = 129/293 (44%), Gaps = 14/293 (4%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PDI YN ++N + + E A +L + ++G + +Y +++ +Y++ +
Sbjct: 342 KPDIATYNILINRLCKEGKKEVAAGLLDEASKKGLILTNLSYAPLIQAYCKSKEYDIASK 401
Query: 114 FFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++ ++ P+ + Y +L++ L G D+AV+ + RG+ AA+Y L LC
Sbjct: 402 LLLQLAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLC 461
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCSPNLV 231
G+ A + ++ + P Y LI + SG+ A +F ++ ++V
Sbjct: 462 KTGRFLPAKLLFSEMLDRSILPDAYVYATLIDGFIRSGDFDEARKVFTLSVEKGVKVDVV 521
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
N M+K + G+ +EA+ M E+ ++PD +T++T++D ++
Sbjct: 522 HHNAMIKGFCRSGMLDEALACMNRMNEEH------------LVPDKFTYSTIIDGYVKQQ 569
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI 344
+++ M + N + +I G L E T++ + D +
Sbjct: 570 DMATAIKIFRDMEKNKCKPNVVTYTSLINGFCCQGDFSLAEETFKEMQSRDLV 622
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 99/244 (40%), Gaps = 24/244 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + L + G R LP K + L+R + PD VY ++
Sbjct: 448 PDAAIYNMLMSGLCKTG------------RFLPAKLLFSEMLDR---SILPDAYVYATLI 492
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-I 123
+ +R ++ A V ++G K + +++ G + ++ + + +
Sbjct: 493 DGFIRSGDFDEARKVFTLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLV 552
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK---CEEA 180
P+ Y +++ ++ A+ DME+ + Y L C G EE
Sbjct: 553 PDKFTYSTIIDGYVKQQDMATAIKIFRDMEKNKCKPNVVTYTSLINGFCCQGDFSLAEET 612
Query: 181 LMQMDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFN-QMKNFCSPNLVTCNIMVK 238
+M V N VV+YT LI++ +S ++ A Y + M N C PN VT N +++
Sbjct: 613 FKEMQSRDLVPN---VVTYTTLIRSFAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQ 669
Query: 239 AYLE 242
+++
Sbjct: 670 GFVK 673
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 62/343 (18%), Positives = 141/343 (41%), Gaps = 38/343 (11%)
Query: 41 FKTGTLERWDPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY 95
F + +E +D +E PD++ NA+L+ V+ ++ E A V ++ ++G +
Sbjct: 149 FLSKAVEIYDYVVELYDSVPDVIACNALLSLVVKSRRLEDARKVYDEMCERGGCVDNYST 208
Query: 96 GLVMEVMLACGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
++++ M + GK + + K +PN + Y ++ + G + A ++++
Sbjct: 209 CIMVKGMCSEGKVEEGRKLIEDRWGKGCVPNIVFYNTIIGGYCKLGDIENAKLVFKELKL 268
Query: 155 RGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG-NIQ 213
+G + + + + C G + ++++ + + V +I A G +
Sbjct: 269 KGFMPTLETFGTMINGFCKKGDFVASDRLLEEVKERGLRVCVWFLNNIIDAKYRHGFKVD 328
Query: 214 NAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV 273
A I + N C P++ T NI++ + G E A L E + KKGL+
Sbjct: 329 PAESIRWIVANDCKPDIATYNILINRLCKEGKKEVAAGLLDEAS-----------KKGLI 377
Query: 274 IPDIYTFNTMLDACAAEKRWD--------------DLELVYKRMLHHGL----HFNAKRH 315
+ ++ ++ ++ A K +D ++V +L HGL H + +
Sbjct: 378 LTNL-SYAPLIQAYCKSKEYDIASKLLLQLAERGCKPDIVTYGILIHGLVVSGHMDDAVN 436
Query: 316 LRM-ILDASRAGKVELLEITWEHLARADRITPPALIKERFCNR 357
+++ ++D + + + L + R P L+ +R
Sbjct: 437 MKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDR 479
>gi|147782978|emb|CAN70810.1| hypothetical protein VITISV_034914 [Vitis vinifera]
Length = 708
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/300 (20%), Positives = 133/300 (44%), Gaps = 17/300 (5%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
R +++PD YN + R + VL+++ + G P + TY ++
Sbjct: 371 FRRVKNKVKPDANTYNILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKA 430
Query: 106 G---KYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
G + ++EF R K P A Y +++ L + +T+E ++DM G++
Sbjct: 431 GMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDV 490
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
+ Y + +C AGK EEA ++++ +P +V+Y + ++ + A ++ +
Sbjct: 491 STYKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGR 550
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
M + C P++ T N+++ + E G + A + + EM D R+ D ++I ++
Sbjct: 551 MIEAGCVPSVHTFNMLISMFFEIGEPDGAFETWHEM--DKRGCARDTDTYCVMIEGLFNC 608
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
N M DAC + +++ G+ ++ ++ S G ++ + EH+ +
Sbjct: 609 NKMEDAC----------FLLDEVINKGIKLPYRKFDCFLMQLSMIGDLQAIHKLSEHMRK 658
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 95/225 (42%), Gaps = 13/225 (5%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M PD+ Y + + +AG + E ++ + MR+ K T+ P Y
Sbjct: 411 MGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRT------KGSTMS------SPTAKTY 458
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-Q 119
++ A V+ + E F +++ + G P +TY V+E M GK Y+F ++
Sbjct: 459 AIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGN 518
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K Y P+ + Y ++ L K++EA+ M G V S + L G+ +
Sbjct: 519 KGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDG 578
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
A ++ K +Y +I+ + +++A ++ +++ N
Sbjct: 579 AFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVIN 623
>gi|413950073|gb|AFW82722.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 620
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 133/325 (40%), Gaps = 34/325 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y +I L + + E +V+ +M P YNA++
Sbjct: 169 PDDVTYATIVSVLCKLDRLDEATEVLAAM--------------------PPVAASYNAIV 208
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYI 123
A R + + F V+ + +G +P+ TY +++ G+ + R V
Sbjct: 209 LALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCT 268
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + LV L+ +G+ +A+ M G S Y L R LCS G + A
Sbjct: 269 PNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSI 328
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + + P V +Y+ LI +G++ A I+N M ++ C PN+V MV + +
Sbjct: 329 LNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCK 388
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+F +A L +M ++ P+ TFNT++ + +R V+
Sbjct: 389 KLMFNQAKSLIDKMLLEN------------CPPNTVTFNTLIRSLCDCRRVGRALGVFHE 436
Query: 303 MLHHGLHFNAKRHLRMILDASRAGK 327
M HG N + + +I R G
Sbjct: 437 MRRHGCVPNGRTYNELIHGLFREGN 461
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/274 (19%), Positives = 114/274 (41%), Gaps = 22/274 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR----------------SLPKKKFKTGTLER 48
P TV+Y + L G +K +++SM K G +
Sbjct: 304 PSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISI 363
Query: 49 WD----PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
W+ +P++VVY +++ ++ + A ++ ++ + P+ T+ ++ +
Sbjct: 364 WNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCD 423
Query: 105 CGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
C + F ++++ +PN Y L++ L+REG +A+ V +M+ GI S
Sbjct: 424 CRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVT 483
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + LC EA++ + K+ +P +++ +I A G ++ AA++ M
Sbjct: 484 YNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMN 543
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
C N++ I++ +AM +M
Sbjct: 544 VVNCHRNILVYTILMAELCNQDKLVDAMTYLLKM 577
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 111/264 (42%), Gaps = 37/264 (14%)
Query: 79 VLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWR 138
+L ++ ++G P TY ++ V+ + + E V + P A +Y +V L R
Sbjct: 158 MLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATE----VLAAMPPVAASYNAIVLALCR 213
Query: 139 EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
E + E S V DM RG+ + Y + C AG+ A + ++ P VV+
Sbjct: 214 EFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVT 273
Query: 199 YTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
+T L++ D G + +A ++ M +P+ V+ NI+++ G + A + M
Sbjct: 274 FTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSME 333
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDA-------CAAEKRWDDLE--------LVYKR 302
+ P++ T++T++D A W+D+ +VY
Sbjct: 334 QHG------------CFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTN 381
Query: 303 MLH---HGLHFNAKRHL--RMILD 321
M+ L FN + L +M+L+
Sbjct: 382 MVDVFCKKLMFNQAKSLIDKMLLE 405
>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 606
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/262 (19%), Positives = 120/262 (45%), Gaps = 17/262 (6%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
+++P++ +N V+NA + + A V++ +K G P+ +Y +++ G +
Sbjct: 218 KIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKM 277
Query: 112 YE----FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
Y+ V+ PN + +L++ W++ ++ ++M + ++ + Y L
Sbjct: 278 YKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSL 337
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227
LC+ GK EA+ DK+ +P +++Y LI +G ++ A +F+ +K +
Sbjct: 338 INGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGT 397
Query: 228 -PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
P N+++ AY + G ++ L +EM + ++PD+ T+N ++
Sbjct: 398 RPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREG------------IVPDVGTYNCLIAG 445
Query: 287 CAAEKRWDDLELVYKRMLHHGL 308
+ + ++ ++ + GL
Sbjct: 446 LCRNGNIEAAKKLFDQLTNKGL 467
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 130/290 (44%), Gaps = 28/290 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y S+ L G I E + D M S ++P+++ Y++++
Sbjct: 329 PNVITYNSLINGLCNGGKINEAIGMRDKMVS---------------AGVQPNLITYHSLI 373
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
N + + A + +K QG +P+ Y ++++ GK + + ++++ +
Sbjct: 374 NGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIV 433
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y L+ L R G + A + + +G+ ++ L CS G+ +A M
Sbjct: 434 PDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGL-PDLVTFHILMEGYCSRGESRKAAML 492
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--FCSPNLVTCNIMVKAYL 241
+ ++ K+ KP ++Y +++ GN++ A + QM+ N+ + N++++ Y
Sbjct: 493 LKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYS 552
Query: 242 EHGLFEEAMKLFQEMAEDS---NHINREYDKKGLV----IPDI--YTFNT 282
+ G E+A L EM E N I E K+ +V +PDI + FN
Sbjct: 553 QKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDKGFVPDIEGHLFNV 602
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/287 (20%), Positives = 127/287 (44%), Gaps = 25/287 (8%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + + P++ +N +++ + G+ V +++ Q P+ TY ++ + G
Sbjct: 286 EMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGG 345
Query: 107 KYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K N K+ + + PN + Y L+N + G EA+ + ++ +G + +Y
Sbjct: 346 KINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYN 405
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
L C GK ++ +++ + P V +Y LI +GNI+ A +F+Q+ N
Sbjct: 406 MLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNK 465
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA------------------------EDSN 261
P+LVT +I+++ Y G +A L +EM+ + +
Sbjct: 466 GLPDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAAT 525
Query: 262 HINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
++ + +K+ + ++ ++N +L + + + +D ++ ML GL
Sbjct: 526 NMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGL 572
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/347 (19%), Positives = 138/347 (39%), Gaps = 56/347 (16%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEFFR 116
++ + ++ A ++E F ++ G K SA + +M +L + ++ Y +
Sbjct: 154 IIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADVEYLYKE 213
Query: 117 KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG- 175
+++ PN + V++N L + GK ++A +EDM+ G + Y L C G
Sbjct: 214 MIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGG 273
Query: 176 -----KCEEALMQM----------------DKICKVANKPL----------------VVS 198
K + L +M D K N P V++
Sbjct: 274 NGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVIT 333
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y LI + G I A + ++M + PNL+T + ++ + ++G+ +EA+ +F +
Sbjct: 334 YNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVK 393
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
P +N ++DA + DD + + M G+ + +
Sbjct: 394 GQGTR------------PTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNC 441
Query: 318 MILDASRAGKVELLEITWEHLARA---DRITPPALIKERFCNRLENK 361
+I R G +E + ++ L D +T L+ E +C+R E++
Sbjct: 442 LIAGLCRNGNIEAAKKLFDQLTNKGLPDLVTFHILM-EGYCSRGESR 487
>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
Length = 718
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 128/285 (44%), Gaps = 30/285 (10%)
Query: 5 PDTVAYRSIAVTLGQAG-HIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
P+ V Y ++ G+ G K + ++ D M + G ++PD + +N++
Sbjct: 145 PNLVTYNAVIDACGKGGVEFKRVLEIFDEM-------LRNG--------MQPDRITFNSL 189
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSY 122
L C + WE A + ++ +G TY +++ + G+ ++ +E ++ K+
Sbjct: 190 LAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNI 249
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+PN + Y +++ + G+ D+A + +M+ GI Y L G+ EEA+
Sbjct: 250 LPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMD 309
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYL 241
++ + VV+Y L+ +F +MK SPNL+T + ++ Y
Sbjct: 310 VCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYS 369
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+ GL+ EAM +F RE+ K GL D+ ++ ++DA
Sbjct: 370 KGGLYREAMDVF-----------REFKKAGLK-ADVVLYSALIDA 402
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 133/294 (45%), Gaps = 36/294 (12%)
Query: 16 TLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEG 75
TLG+ G ++ + K FK E + + ++A+++A R
Sbjct: 86 TLGRLGKVE-----------MAKTVFKAALTEGYGN----TVYAFSAIISAYGRSGYCNE 130
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGK----YNLVYEFFRKVQKSYI-PNALAYK 130
A + +K G KP+ TY V++ ACGK + V E F ++ ++ + P+ + +
Sbjct: 131 AIKIFYSMKDYGLKPNLVTYNAVID---ACGKGGVEFKRVLEIFDEMLRNGMQPDRITFN 187
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
L+ + G + A S +M RGI Y L +C G+ + A M ++
Sbjct: 188 SLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAK 247
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEA 249
P VV+Y+ +I +G + +A +FN+MK S + V+ N ++ Y + G FEEA
Sbjct: 248 NILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEA 307
Query: 250 MKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
M + +EM E+S + D+ T+N +L + ++D + V++ M
Sbjct: 308 MDVCREM-ENSG-----------IRKDVVTYNALLGGYGKQYKYDVVRKVFEEM 349
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 93/202 (46%), Gaps = 16/202 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ +AG + + ++ + M+ L + D V YN +L
Sbjct: 251 PNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLG---------------ISLDRVSYNTLL 295
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + ++E A V ++++ G + TY ++ KY++V + F +++ ++
Sbjct: 296 SIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVS 355
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN L Y L++ + G EA+ + ++ G+ LY L LC G E A+
Sbjct: 356 PNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSL 415
Query: 184 MDKICKVANKPLVVSYTGLIQA 205
+D++ K +P VV+Y +I A
Sbjct: 416 LDEMTKEGIRPNVVTYNSIIDA 437
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 14/227 (6%)
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
C K +EF K ++ +++TL R GK + A + + G + +
Sbjct: 56 CKKAICCFEFAVKRERKKNEQGKLASAMISTLGRLGKVEMAKTVFKAALTEGYGNTVYAF 115
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG-NIQNAAYIFNQM- 222
+ +G C EA+ + KP +V+Y +I AC G + IF++M
Sbjct: 116 SAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEML 175
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+N P+ +T N ++ + GL+E A L EM +NR D+ DI+T+NT
Sbjct: 176 RNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEM------VNRGIDQ------DIFTYNT 223
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+LDA + D + M + N + MI ++AG+++
Sbjct: 224 LLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLD 270
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 15/148 (10%)
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGL-FEEAMKLF 253
V +++ +I A SG A IF MK++ PNLVT N ++ A + G+ F+ +++F
Sbjct: 112 VYAFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEIF 171
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK 313
EM + PD TFN++L C+ W+ + M++ G+ +
Sbjct: 172 DEMLRNGMQ------------PDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIF 219
Query: 314 RHLRMILDASRAGKVEL-LEITWEHLAR 340
+ ++ + G++++ EI E A+
Sbjct: 220 TYNTLLDAVCKGGQLDMAFEIMSEMPAK 247
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P++V ++A+LNAC R +E A +L++L+ + +GL+M G V+
Sbjct: 521 IKPNVVTFSAILNACSRCNSFEEASMLLEELRLFDNQVYGVAHGLLM------GYRENVW 574
Query: 113 E----FFRKVQKSYIPNALA-YKVLVNTLWREGKTDEAVSAVEDMERRGI 157
E F +V+ A A Y L + LW G+ A V + +RR +
Sbjct: 575 EQAQSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQV 624
>gi|356525788|ref|XP_003531505.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic-like [Glycine max]
Length = 572
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 122/285 (42%), Gaps = 33/285 (11%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR----KVQKSYIPNALAYKV 131
AF L+ L +GQKP +++ K+N + R V IP+A +Y
Sbjct: 83 AFLHLEYLVGKGQKPEVNQ---ATQLLYDLCKFNKARKAVRVMEMMVGSGIIPDAASYTH 139
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA 191
LVN L + G A+ VE ME G + Y L + LC G ++L +D++ K
Sbjct: 140 LVNFLCKRGNVGYAIQLVEKMEGHGFPTNTVTYNTLVKGLCMHGNLNQSLQLLDRLTKKG 199
Query: 192 NKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLEHGLFEEAM 250
P +Y+ L++A + A + + + PNLV+ N+++ + G EEA+
Sbjct: 200 LIPNAFTYSFLLEAAYKERGVDEAMKLLDDIIAKGGEPNLVSYNVLLTGLCKEGRTEEAI 259
Query: 251 KLFQEMA------------------------EDSNHINREYDKKGLVIPDIYTFNTMLDA 286
KLFQE+ E++N + E DK+ P + T+N ++ +
Sbjct: 260 KLFQELPVKGFSPSVVSFNILLRSLCYEGRWEEANELLAEMDKEDQP-PSVVTYNILITS 318
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELL 331
+ R + V M G +A + +I + GKV+L+
Sbjct: 319 LSLNGRTEQAFKVLDEMTRSGFKASATSYNPIIARLCKEGKVDLV 363
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 124/281 (44%), Gaps = 19/281 (6%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP++V YN +L + + E A + Q+L +G PS ++ +++ + G++ E
Sbjct: 236 EPNLVSYNVLLTGLCKEGRTEEAIKLFQELPVKGFSPSVVSFNILLRSLCYEGRWEEANE 295
Query: 114 FFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++ K P+ + Y +L+ +L G+T++A +++M R G SA Y + LC
Sbjct: 296 LLAEMDKEDQPPSVVTYNILITSLSLNGRTEQAFKVLDEMTRSGFKASATSYNPIIARLC 355
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM---KNFCSPN 229
GK + L +D++ P +Y+ I + G +Q A +I + +NF P
Sbjct: 356 KEGKVDLVLKCLDQMIHRRCHPNEGTYSA-ISMLSEQGKVQEAFFIIQSLGSKQNF--PM 412
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
++ + G A ++ EM K G PD YT+++++
Sbjct: 413 HDFYKNLIASLCRKGNTYPAFQMLYEMT-----------KYGFT-PDSYTYSSLIRGMCR 460
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
E D+ +++ + + + + +IL +A + +L
Sbjct: 461 EGMLDEALKIFRILEENDHRPDIDNYNALILGFCKAQRTDL 501
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 115/265 (43%), Gaps = 23/265 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +Y + L + G++ +++ M F T T V YN ++
Sbjct: 132 PDAASYTHLVNFLCKRGNVGYAIQLVEKMEG---HGFPTNT------------VTYNTLV 176
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK----VQK 120
+ +L +L ++G P+A TY ++E A K V E + + K
Sbjct: 177 KGLCMHGNLNQSLQLLDRLTKKGLIPNAFTYSFLLE---AAYKERGVDEAMKLLDDIIAK 233
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
PN ++Y VL+ L +EG+T+EA+ +++ +G S + L R LC G+ EEA
Sbjct: 234 GGEPNLVSYNVLLTGLCKEGRTEEAIKLFQELPVKGFSPSVVSFNILLRSLCYEGRWEEA 293
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
+ ++ K P VV+Y LI + +G + A + ++M ++ + + N ++
Sbjct: 294 NELLAEMDKEDQPPSVVTYNILITSLSLNGRTEQAFKVLDEMTRSGFKASATSYNPIIAR 353
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHIN 264
+ G + +K +M H N
Sbjct: 354 LCKEGKVDLVLKCLDQMIHRRCHPN 378
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 136/332 (40%), Gaps = 46/332 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLE------------RWDPR 52
P+ V+Y + L + G +E I + LP K F + RW+
Sbjct: 237 PNLVSYNVLLTGLCKEGRTEE---AIKLFQELPVKGFSPSVVSFNILLRSLCYEGRWEEA 293
Query: 53 LE-----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
E P +V YN ++ + + E AF VL ++ + G K SAT+Y ++
Sbjct: 294 NELLAEMDKEDQPPSVVTYNILITSLSLNGRTEQAFKVLDEMTRSGFKASATSYNPIIAR 353
Query: 102 MLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ GK +LV + + + + PN Y ++ L +GK EA ++ + +
Sbjct: 354 LCKEGKVDLVLKCLDQMIHRRCHPNEGTYSA-ISMLSEQGKVQEAFFIIQSLGSKQNFPM 412
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y +L LC G A + ++ K P +Y+ LI+ G + A IF
Sbjct: 413 HDFYKNLIASLCRKGNTYPAFQMLYEMTKYGFTPDSYTYSSLIRGMCREGMLDEALKIFR 472
Query: 221 QM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
+ +N P++ N ++ + + + ++++F M KG V P+ T
Sbjct: 473 ILEENDHRPDIDNYNALILGFCKAQRTDLSIEIFLMMV-----------NKGCV-PNENT 520
Query: 280 FNTMLDACAAEKRWD---DL--ELVYKRMLHH 306
+ +++ A E+ D DL EL K++L
Sbjct: 521 YTILVEGLAFEEETDIAADLMKELYLKKVLSQ 552
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 75/181 (41%), Gaps = 22/181 (12%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKKF----------KTGTLERWD 50
+P+ Y +I++ L + G ++E F +I S+ S P F K T +
Sbjct: 376 HPNEGTYSAISM-LSEQGKVQEAFFIIQSLGSKQNFPMHDFYKNLIASLCRKGNTYPAFQ 434
Query: 51 PRLE-------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
E PD Y++++ R + A + + L++ +P Y ++
Sbjct: 435 MLYEMTKYGFTPDSYTYSSLIRGMCREGMLDEALKIFRILEENDHRPDIDNYNALILGFC 494
Query: 104 ACGKYNLVYE-FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+ +L E F V K +PN Y +LV L E +TD A ++++ + ++ +
Sbjct: 495 KAQRTDLSIEIFLMMVNKGCVPNENTYTILVEGLAFEEETDIAADLMKELYLKKVLSQST 554
Query: 163 L 163
+
Sbjct: 555 V 555
>gi|224030417|gb|ACN34284.1| unknown [Zea mays]
gi|413950072|gb|AFW82721.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 647
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 133/325 (40%), Gaps = 34/325 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y +I L + + E +V+ +M P YNA++
Sbjct: 196 PDDVTYATIVSVLCKLDRLDEATEVLAAM--------------------PPVAASYNAIV 235
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYI 123
A R + + F V+ + +G +P+ TY +++ G+ + R V
Sbjct: 236 LALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCT 295
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + LV L+ +G+ +A+ M G S Y L R LCS G + A
Sbjct: 296 PNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSI 355
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + + P V +Y+ LI +G++ A I+N M ++ C PN+V MV + +
Sbjct: 356 LNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCK 415
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+F +A L +M ++ P+ TFNT++ + +R V+
Sbjct: 416 KLMFNQAKSLIDKMLLEN------------CPPNTVTFNTLIRSLCDCRRVGRALGVFHE 463
Query: 303 MLHHGLHFNAKRHLRMILDASRAGK 327
M HG N + + +I R G
Sbjct: 464 MRRHGCVPNGRTYNELIHGLFREGN 488
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 123/290 (42%), Gaps = 37/290 (12%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P++ YN ++ A + + A +L ++ ++G P TY ++ V+ + +
Sbjct: 159 VHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEAT 218
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
E V + P A +Y +V L RE + E S V DM RG+ + Y + C
Sbjct: 219 E----VLAAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFC 274
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
AG+ A + ++ P VV++T L++ D G + +A ++ M +P+ V
Sbjct: 275 KAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTV 334
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA----- 286
+ NI+++ G + A + M + P++ T++T++D
Sbjct: 335 SYNILIRGLCSVGDLKGASSILNSMEQHG------------CFPNVRTYSTLIDGFSKAG 382
Query: 287 --CAAEKRWDDLE--------LVYKRMLH---HGLHFNAKRHL--RMILD 321
A W+D+ +VY M+ L FN + L +M+L+
Sbjct: 383 DLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLE 432
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/312 (18%), Positives = 127/312 (40%), Gaps = 25/312 (8%)
Query: 32 SMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPS 91
++++ + G +PRL YN +++A +R V +++ G P+
Sbjct: 109 ALKTFYRAVHDLGCARPTEPRL------YNHLIDALLRENMVGAVVLVYDNMRKDGVHPN 162
Query: 92 ATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVE 150
TY L++ + + + ++ +K P+ + Y +V+ L + + DEA +
Sbjct: 163 VFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLA 222
Query: 151 DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG 210
M AA Y + LC + +E + + +P V++YT ++ A +G
Sbjct: 223 AMPP-----VAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAG 277
Query: 211 NIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
++ A I +M C+PN+VT +V+ + G +A+ +++ M +
Sbjct: 278 ELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEG--------- 328
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
P ++N ++ + + M HG N + + +I S+AG +
Sbjct: 329 ---WAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLG 385
Query: 330 LLEITWEHLARA 341
W ++R+
Sbjct: 386 GAISIWNDMSRS 397
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/274 (19%), Positives = 114/274 (41%), Gaps = 22/274 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR----------------SLPKKKFKTGTLER 48
P TV+Y + L G +K +++SM K G +
Sbjct: 331 PSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISI 390
Query: 49 WD----PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
W+ +P++VVY +++ ++ + A ++ ++ + P+ T+ ++ +
Sbjct: 391 WNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCD 450
Query: 105 CGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
C + F ++++ +PN Y L++ L+REG +A+ V +M+ GI S
Sbjct: 451 CRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVT 510
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + LC EA++ + K+ +P +++ +I A G ++ AA++ M
Sbjct: 511 YNTVVSGLCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMN 570
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
C N++ I++ +AM +M
Sbjct: 571 VVNCHRNILVYTILMAELCNQDKLVDAMTYLLKM 604
>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/306 (21%), Positives = 126/306 (41%), Gaps = 29/306 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + + ++ L G IKE + + M W EP+++ YN V+
Sbjct: 164 PDAITFNTLINGLCNEGKIKEAVGLFNEMV--------------WSGH-EPNVISYNTVI 208
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + A V ++++Q KP+ TY +++ + N EF + V +
Sbjct: 209 NGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIP 268
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y +++ G+ +EA ++M R ++ + L LC G EA
Sbjct: 269 PDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCV 328
Query: 184 MDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLE 242
+ + + +P +Y L+ CL + + + + C+PNL + NI++ Y +
Sbjct: 329 SETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCK 388
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
EA +L EM+E + + PD T++T++ R + ++K
Sbjct: 389 SKRMNEAKRLLSEMSEKN------------LTPDTVTYSTLMQGLCQVGRPREALNLFKE 436
Query: 303 MLHHGL 308
M GL
Sbjct: 437 MCSSGL 442
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 127/309 (41%), Gaps = 35/309 (11%)
Query: 5 PDTVAYRSIA---VTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
PD V Y +I +LGQ LF E + PD V +N
Sbjct: 269 PDVVTYNTILHGFCSLGQLNEATRLFK------------------EMVGRNVMPDTVTFN 310
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQK 120
+++ + A V + + ++G +P+A TY +M+ + + + + K
Sbjct: 311 ILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGK 370
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
PN +Y +L+N + + +EA + +M + + Y L + LC G+ EA
Sbjct: 371 GCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREA 430
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
L ++C P +++Y+ L+ G++ A + +M + PN++ I+++
Sbjct: 431 LNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRG 490
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
G E A +LF +++ D + PDI+T+N M+ E D+
Sbjct: 491 MFIAGKLEVAKELFSKLSADG------------IRPDIWTYNVMIKGLLKEGLSDEAYEF 538
Query: 300 YKRMLHHGL 308
+++M G
Sbjct: 539 FRKMEDDGF 547
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 102/206 (49%), Gaps = 4/206 (1%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++ YN ++N + K+ A +L ++ ++ P TY +M+ + G+
Sbjct: 374 PNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNL 433
Query: 115 FRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F+++ S +P+ +AY +L++ + G DEA+ +++M R I + LY L R +
Sbjct: 434 FKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFI 493
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--FCSPNLV 231
AGK E A K+ +P + +Y +I+ L G A F +M++ F P+
Sbjct: 494 AGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFL-PDSC 552
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMA 257
+ N++++ +L++ A++L EM
Sbjct: 553 SYNVIIQGFLQNQDSSTAIQLIDEMV 578
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 108/258 (41%), Gaps = 49/258 (18%)
Query: 48 RWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK 107
R +PR P +V + L + ++KQ+ A + Q+ G
Sbjct: 89 RMNPR--PSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFG-------------------- 126
Query: 108 YNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
N + VL+N L R D AVS + M + GI A + L
Sbjct: 127 --------------VTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTL 172
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
LC+ GK +EA+ +++ ++P V+SY +I +GN A +F +M +N
Sbjct: 173 INGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRG 232
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
PN+VT N ++ + + L EA++ EM + + PD+ T+NT+L
Sbjct: 233 KPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRG------------IPPDVVTYNTILHG 280
Query: 287 CAAEKRWDDLELVYKRML 304
+ + ++ ++K M+
Sbjct: 281 FCSLGQLNEATRLFKEMV 298
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 104/250 (41%), Gaps = 16/250 (6%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQ 119
N ++N R + A V+ ++ + G +P A T+ ++ + GK F + V
Sbjct: 135 NVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVW 194
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ PN ++Y ++N L + G T AV ME+ + Y + LC E
Sbjct: 195 SGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNE 254
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMV 237
A+ + ++ P VV+Y ++ G + A +F +M +N P+ VT NI+V
Sbjct: 255 AVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNV-MPDTVTFNILV 313
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ G+ EA + + M E P+ YT+N ++D + D+
Sbjct: 314 DGLCKEGMVSEARCVSETMTEKGAE------------PNAYTYNALMDGYCLHNQMDEAI 361
Query: 298 LVYKRMLHHG 307
V M+ G
Sbjct: 362 KVLGIMIGKG 371
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 94/196 (47%), Gaps = 13/196 (6%)
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F+R V+ + P+ + + + ++ ++ + AVS M+ G+ + L CLC
Sbjct: 84 FYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCR 143
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVT 232
+ A+ M K+ K+ +P +++ LI + G I+ A +FN+M + PN+++
Sbjct: 144 LSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVIS 203
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ ++G A+++F++M ++ P++ T+NT++D+ ++
Sbjct: 204 YNTVINGLCKNGNTIMAVRVFRKMEQNRGK------------PNVVTYNTIIDSLCKDRL 251
Query: 293 WDDLELVYKRMLHHGL 308
++ M+ G+
Sbjct: 252 VNEAVEFLSEMVDRGI 267
>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
Length = 708
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 135/331 (40%), Gaps = 35/331 (10%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL------ERWDPR 52
M P+ + + ++ L + G IK+ F++++ M R + TL + W +
Sbjct: 288 MGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEK 347
Query: 53 -------------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM 99
+P++ Y A++N + + A +L ++++QG P+ TY ++
Sbjct: 348 AFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLI 407
Query: 100 EVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ G + YE + K + PN Y +++ L ++G DEA + + G+
Sbjct: 408 DGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQ 467
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
Y L C +L+ +K+ KV P + SYT LI ++ + +
Sbjct: 468 ADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERL 527
Query: 219 FNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI 277
F + + P T M+ Y +G A+KLFQ M SNH PD
Sbjct: 528 FEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRM---SNHG---------CAPDS 575
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
T+ ++ E + DD +Y M+ GL
Sbjct: 576 ITYGALISGLCKESKLDDARNLYDAMMDKGL 606
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 134/305 (43%), Gaps = 19/305 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P+++ + A++N ++ + AF +L+++ ++G KP+ T+ +++ + G +
Sbjct: 290 LAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAF 349
Query: 113 EFFRKVQKS--YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
F K+ +S Y PN Y ++N +E K + A + M+ +G+V + Y L
Sbjct: 350 RLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDG 409
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
C G A MD + K P + +Y +I G++ A + N++ + +
Sbjct: 410 HCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQAD 469
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
VT I++ + ++ F +M K G PDI+++ T++
Sbjct: 470 GVTYTILMSVHCRQADTNRSLVFFNKML-----------KVGFT-PDIHSYTTLISXFCR 517
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEITWEHLARADRIT 345
+K+ + E +++ + GL K + MI R G V+L + H D IT
Sbjct: 518 QKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSIT 577
Query: 346 PPALI 350
ALI
Sbjct: 578 YGALI 582
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 112/261 (42%), Gaps = 17/261 (6%)
Query: 53 LEPDIVVYNAVLNACVRR-KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
+ PD V + ++ AC + E W L + ++G T L+++ G N V
Sbjct: 220 VSPDCVSFKLMVVACCNMGRVLEAEKW-LNAMVERGFIVDNATCTLIIDAFCQKGYVNRV 278
Query: 112 YEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+F K V+ PN + + L+N L ++G +A +E+M RRG + + L
Sbjct: 279 VGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDG 338
Query: 171 LCSAGKCEEALMQMDKICKV-ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSP 228
LC G E+A K+ + KP V +YT +I + A + ++M+ P
Sbjct: 339 LCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVP 398
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
N T ++ + + G F A +L M K+G P+IYT+N ++D
Sbjct: 399 NTNTYTTLIDGHCKVGNFVRAYELMDLMG-----------KEGFS-PNIYTYNAIIDGLC 446
Query: 289 AEKRWDDLELVYKRMLHHGLH 309
+ D+ + ++ HGL
Sbjct: 447 KKGSLDEAYRLLNKVSVHGLQ 467
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 93/247 (37%), Gaps = 28/247 (11%)
Query: 115 FRKVQKSYIPNALAY-------------KVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
FR + YI +A A + +V GK EAV+ V +M+ +G+V S
Sbjct: 130 FRHFMRLYIVSATALIGNKNLERANEVMQCMVMNFAENGKLKEAVNMVVEMQNQGLVXST 189
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
+ G E A ++C+ P VS+ ++ AC + G + A N
Sbjct: 190 QTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAEKWLNA 249
Query: 222 M--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
M + F N TC +++ A+ + G + F +M E GL P++
Sbjct: 250 MVERGFIVDN-ATCTLIIDAFCQKGYVNRVVGYFWKMVE-----------MGLA-PNVIN 296
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
F +++ + + + M+ G N H +I + G E + L
Sbjct: 297 FTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLV 356
Query: 340 RADRITP 346
R+D P
Sbjct: 357 RSDGYKP 363
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 54/297 (18%), Positives = 106/297 (35%), Gaps = 53/297 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T Y ++ + G+ ++++D M K+ F P+I YNA++
Sbjct: 398 PNTNTYTTLIDGHCKVGNFVRAYELMDLM---GKEGF------------SPNIYTYNAII 442
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ ++ + A+ +L ++ G + TY ++M V N FF K+ K +
Sbjct: 443 DGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFT 502
Query: 124 PNALAYKVLVNTLWRE-----------------------------------GKTDEAVSA 148
P+ +Y L++ R+ G T AV
Sbjct: 503 PDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKL 562
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+ M G + Y L LC K ++A D + P V+ L
Sbjct: 563 FQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYCK 622
Query: 209 SGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
+ A + ++++ + T N +V+ G + A F ++ + ++NR
Sbjct: 623 KDDSSTAINVLDRLEK--RQWIRTVNTLVRKLCSEGKLDMAALFFHKLLDKEPNVNR 677
>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 543
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 141/327 (43%), Gaps = 37/327 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--------------------RSLPKKKFKTG 44
P+ V Y ++ G +K+ D+ + M + K+ KT
Sbjct: 230 PNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTV 289
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
++P++V Y ++++ K+ A +L + Q+G P +Y ++++
Sbjct: 290 FAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCK 349
Query: 105 CGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
K + F+++ K IP+ + Y L++ L + GK A+ V++M RG+
Sbjct: 350 IKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIIT 409
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y + LC + ++A+ + K+ +P + +YT LI G +++A IF +
Sbjct: 410 YSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLL 469
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
K + + + T +M+ + GLF+EA+ L +M ++S IPD T+
Sbjct: 470 VKGY-NITVNTYTVMIHGFCNKGLFDEALALLSKMKDNS------------CIPDAVTYE 516
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGL 308
++ + + D E + + M+ GL
Sbjct: 517 IIIRSLFDKDENDKAEKL-REMITRGL 542
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 136/318 (42%), Gaps = 18/318 (5%)
Query: 46 LERWDPRL-EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L R D L +P++V+Y+ +++ + K AF + ++ +G P+ TY ++
Sbjct: 185 LRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFT 244
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ + F K + ++ P+ + +LV+ ++GK E + M ++GI +
Sbjct: 245 VGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVT 304
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L C + +A + + + P + SY LI + A +F +M
Sbjct: 305 YCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMH 364
Query: 224 N-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ P++VT N ++ + G A+KL EM + V PDI T+++
Sbjct: 365 HKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRG------------VPPDIITYSS 412
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEH-LARA 341
+LDA + D + ++ G+ N + +I + G++E +E L +
Sbjct: 413 ILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKG 472
Query: 342 DRIT--PPALIKERFCNR 357
IT ++ FCN+
Sbjct: 473 YNITVNTYTVMIHGFCNK 490
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 78/392 (19%), Positives = 160/392 (40%), Gaps = 62/392 (15%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
SS + + Y SI+ T DV+D+ + L R +P P + +N
Sbjct: 36 SSKINFIPYSSISTTFHNNN------DVVDAFSLFSR-------LLRQNP--TPPAIEFN 80
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQG----------------QKPSATTYGLVMEVMLAC 105
+L + V+ K + + QQ++ +G P+ T+ +++ +
Sbjct: 81 KILGSLVKSKHYHTVLSLSQQMEFEGINPVLFHFQHPHQLMGYHPNTITFTTLIKGLCLK 140
Query: 106 GKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G+ + F V + + + Y L++ L + G+T A+ + ++ + + +Y
Sbjct: 141 GQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMY 200
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-- 222
+ +C +A ++ P VV+Y+ LI G +++A +FN+M
Sbjct: 201 STIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMIL 260
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE--------------DSNHINREYD 268
+N P++ T NI+V + + G +E +F M + D + +E +
Sbjct: 261 ENI-KPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVN 319
Query: 269 KKGLVI---------PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
K ++ PDI ++N ++D K+ D+ ++K M H + + + +I
Sbjct: 320 KAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLI 379
Query: 320 LDASRAGKVEL-LEITWEHLARADRITPPALI 350
+ GK+ L++ E DR PP +I
Sbjct: 380 DGLCKLGKISYALKLVDE---MHDRGVPPDII 408
>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
Length = 577
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 14/257 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD + YN +++AC + + A V +++ +P TY ++ V CGK
Sbjct: 62 LRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAE 121
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F++ V+K + P+A+ Y L+ +EG + E++ + G Y +
Sbjct: 122 LMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMY 181
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
G+ + AL D++ + P V+YT L+ + I A + +M + P L
Sbjct: 182 GKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTL 241
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT + ++ AY + G ++A + F M E V PD + MLD A
Sbjct: 242 VTFSALICAYAKSGRQDDAERTFDRMVESG------------VKPDRLAYLVMLDVFARS 289
Query: 291 KRWDDLELVYKRMLHHG 307
L ++Y+ M+ G
Sbjct: 290 DETRKLMVLYRAMIKDG 306
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 130/298 (43%), Gaps = 22/298 (7%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEG--AFWVLQQLKQQGQKPSATTYGLVMEVMLACGK 107
D +EPD+V +N ++NA + A +L +++Q G +P A TY ++ AC +
Sbjct: 22 DQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLIS---ACSQ 78
Query: 108 Y----NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
+ V F + P+ Y +V+ R GK EA +++ +G A
Sbjct: 79 GSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVT 138
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L G E +++ K + ++Y +I G + A ++++M+
Sbjct: 139 YNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMR 198
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
C+P+ VT ++V + + EA K+ +EMA+ + P + TF+
Sbjct: 199 AIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAG------------LKPTLVTFSA 246
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
++ A A R DD E + RM+ G+ + +L M+ +R+ + L + + + +
Sbjct: 247 LICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIK 304
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + +LG+ I E V++ M D L+P +V ++A++
Sbjct: 204 PDAVTYTVLVDSLGKMDRISEAGKVLEEM---------------ADAGLKPTLVTFSALI 248
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
A + + + A ++ + G KP Y ++++V + + +R ++ Y
Sbjct: 249 CAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYK 308
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDME 153
P+ Y+VL+ L + + DE ++DME
Sbjct: 309 PDDGLYQVLLAALAKGNEHDEIEGVIQDME 338
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 80/171 (46%), Gaps = 15/171 (8%)
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQN--AAYIFNQMKNF-CSPNL 230
+G+ ++A +D + +P +VS+ LI A SG + A + ++++ P+
Sbjct: 7 SGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRPDA 66
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T N ++ A + ++A+ +F+EM PD++T+N M+
Sbjct: 67 ITYNTLISACSQGSNLDDAVAVFEEMIASECR------------PDLWTYNAMVSVHGRC 114
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
+ + EL++K ++ G +A + ++ ++ G VE +E E L +A
Sbjct: 115 GKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKA 165
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 85/209 (40%), Gaps = 21/209 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D + Y ++ G+ G + + D MR++ PD V Y +++
Sbjct: 170 DGITYNTMIHMYGKMGRLDLALGLYDEMRAIG---------------CTPDAVTYTVLVD 214
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYIP 124
+ + + A VL+++ G KP+ T+ ++ G+ + F R V+ P
Sbjct: 215 SLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKP 274
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE---AL 181
+ LAY V+++ R +T + + M + G LY L L + +E +
Sbjct: 275 DRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVI 334
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSG 210
M+ + ++ PLV+S + C+ G
Sbjct: 335 QDMEAVFEM--NPLVISSILIKAECISQG 361
>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
Length = 1356
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 148/323 (45%), Gaps = 20/323 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+P + N +L + V+ K+ E + + +++ +G P+ T+ +++ + G
Sbjct: 194 FKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAG 253
Query: 113 EFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++++++ ++P + Y L+N ++G+ A+ ++ M +GI Y L
Sbjct: 254 NLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNL 313
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C+ + +A + + K+ K P V+Y LI + G I AA +FN+M F SPN
Sbjct: 314 CTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNC 373
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N ++ + G FEEA++L M + GL + ++ T+ T+L+
Sbjct: 374 VTYNALIGGHCHVGDFEEALRLLDHM-----------EAAGLRLNEV-TYGTLLNGLCKH 421
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG----KVELLEITWEHLARADRITP 346
++++ + + +RM + + + +I + G V+L+ ++ D IT
Sbjct: 422 EKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITY 481
Query: 347 PALIKERFCNRLENKDYGSAISC 369
+LI FC R+ N I C
Sbjct: 482 SSLING-FC-RVGNIKSAKEIIC 502
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 108/258 (41%), Gaps = 23/258 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ + G I V + M ++D L P+ V YNA++
Sbjct: 336 PNEVTYNTLINGFVKEGKIGVAAQVFNEM-------------SKFD--LSPNCVTYNALI 380
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+E A +L ++ G + + TYG ++ + K+ L +++ +
Sbjct: 381 GGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMV 440
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+AY VL++ L + G DEAV V +M + G+ Y L C G + A
Sbjct: 441 VGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSA--- 497
Query: 184 MDKICKVANKPLVVS---YTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKA 239
+ IC++ LV++ Y+ LI GN+ A ++ M N + TCN++V +
Sbjct: 498 KEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSS 557
Query: 240 YLEHGLFEEAMKLFQEMA 257
G EA K M+
Sbjct: 558 LCRDGKLGEAEKFLCHMS 575
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 2/206 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P+ V YN ++N V+ + A V ++ + P+ TY ++ G +
Sbjct: 334 ISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEAL 393
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++ + + N + Y L+N L + K + A +E M +V Y L L
Sbjct: 394 RLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGL 453
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C G +EA+ + + K P V++Y+ LI GNI++A I +M ++ N
Sbjct: 454 CKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNK 513
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEM 256
+ + ++ + +HG EAMK++ M
Sbjct: 514 IIYSTLIYNFCQHGNVTEAMKVYAVM 539
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 121/307 (39%), Gaps = 44/307 (14%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD + + S+ + L ++G + D L K GTL D +N +
Sbjct: 826 FPDKLTFHSLILGLSKSG-------IPDLGVKLLGKMIMEGTL--------ADQFTFNIL 870
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN----LVYEFFRKVQ 119
+N + AF ++ + G P TY + + + +++E ++
Sbjct: 871 INKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEM---LE 927
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
IP Y L+N + R G A ++ME G + R L GK E+
Sbjct: 928 NGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTED 987
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNL--VTCNIMV 237
A++ +D + ++ P + ++T L+ I A + M+ C L V N+++
Sbjct: 988 AMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVME-LCGLKLDVVAYNVLI 1046
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA-------E 290
+G A +L++EM R D + P+I T+ ++DA +A E
Sbjct: 1047 MGMCANGDSAAAFELYEEM--------RHRD----LCPNITTYAVLVDAISAANNLIQGE 1094
Query: 291 KRWDDLE 297
K DL+
Sbjct: 1095 KLLTDLQ 1101
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/311 (21%), Positives = 120/311 (38%), Gaps = 43/311 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y S+ + G+IK ++I M +++G L + ++Y+ ++
Sbjct: 476 PDVITYSSLINGFCRVGNIKSAKEIICRM-------YRSG--------LVLNKIIYSTLI 520
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ A V + G T +++ + GK +F + + +
Sbjct: 521 YNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLV 580
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN++ Y ++N G A S +DM + G S Y L + LC G EA
Sbjct: 581 PNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKF 640
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++++ + V Y L+ SGN+ A +F++M +N P+ T + ++
Sbjct: 641 LNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCR 700
Query: 243 HGLFEEAMKLF-QEMAEDS---NHIN---------------------REYDKKGLVIPDI 277
G A+ LF M + NH+ E KKG PD
Sbjct: 701 KGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKG-TCPDT 759
Query: 278 YTFNTMLDACA 288
FN ++D+C+
Sbjct: 760 VAFNAIIDSCS 770
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 115/318 (36%), Gaps = 64/318 (20%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ V Y + L +AGH K F + M K GT PD V +NA+
Sbjct: 721 FPNHVMYTCLVDGLSKAGHPKAAFYFFEEM-------MKKGTC--------PDTVAFNAI 765
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME----------------VMLACGK 107
+++C RR Q A ++ G P+ TY +++ M+ G
Sbjct: 766 IDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGI 825
Query: 108 YN---LVYEFFRKVQKSYIP-----------------NALAYKVLVNTLWREGKTDEAVS 147
+ + + KS IP + + +L+N GK +A
Sbjct: 826 FPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFD 885
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
V M G+ Y + L E+ + + ++ + P Y LI
Sbjct: 886 LVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMC 945
Query: 208 DSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
G+IQ A + ++M+ + V + MV+ L G E+AM + M
Sbjct: 946 RVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHML--------- 996
Query: 267 YDKKGLVIPDIYTFNTML 284
+ ++P I TF T++
Sbjct: 997 ---RMRLLPTIATFTTLM 1011
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 61/314 (19%), Positives = 121/314 (38%), Gaps = 29/314 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P+ V+Y +++ + + AF+ +++ ++G P + +++ G+
Sbjct: 720 LFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKAN 779
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+FF ++ PN Y +L++ ++ +S M R GI ++ L L
Sbjct: 780 DFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGL 839
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
+G + + + K+ ++ LI +SG ++ A + N M P+
Sbjct: 840 SKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDR 899
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T N + + F E+ + EM E+ VIP + T+++
Sbjct: 900 DTYNHIFNGLNKKSAFRESTVVLHEMLENG------------VIPKHAQYITLINGMC-- 945
Query: 291 KRWDDLELVYK-----RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRIT 345
R D++ +K L G H A+ M+ GK E + +H+ R R+
Sbjct: 946 -RVGDIQGAFKLKDEMEALGFGSHEVAES--AMVRGLLHCGKTEDAMLVLDHMLRM-RLL 1001
Query: 346 PP----ALIKERFC 355
P + RFC
Sbjct: 1002 PTIATFTTLMHRFC 1015
>gi|225454807|ref|XP_002274300.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At4g17915-like [Vitis vinifera]
Length = 457
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/331 (22%), Positives = 141/331 (42%), Gaps = 37/331 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ + I + VI M+ + + PD++ YN+++
Sbjct: 40 PDVVTYNTLLSAYSRFVGIDAAYSVIHRMK---------------EAGISPDVITYNSLI 84
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
A +R + + +++ + G +P +Y +M GK + F+ + + +
Sbjct: 85 AAATKRCLLSRSLDLFEEMLRTGIRPDVWSYNSLMHCFFKLGKPDEANRVFQDIILTNLL 144
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P++ + +++N L G T A+S ++R+G V Y L LC + K A
Sbjct: 145 PSSSTFNIMINGLCNNGYTGYALSLYRYLQRQGFVPELVTYNILINGLCKSRKLNAARRI 204
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--FCSPNLVTCNIMVKAYL 241
+ ++ + N P ++YT +++ C S + IF++MK+ + C + + A
Sbjct: 205 LRELGESGNVPDAITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCAV-IAALT 263
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G EEA + ++MA + DI ++NT+++ R LE YK
Sbjct: 264 KTGRLEEANDIMEQMARSD------------IDLDIVSYNTVMNLYC---RNGKLEATYK 308
Query: 302 ---RMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ HGL + H +I +AG VE
Sbjct: 309 LLDEIEEHGLECDEYTHTILIDGLCKAGNVE 339
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 130/310 (41%), Gaps = 55/310 (17%)
Query: 42 KTGTLERWDP--------RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSAT 93
K G LE+ + L PD+V YN +L+A R + A+ V+ ++K+ G P
Sbjct: 19 KVGQLEKAEAVVIDGIRLGLLPDVVTYNTLLSAYSRFVGIDAAYSVIHRMKEAGISPDVI 78
Query: 94 TYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDM 152
TY ++ + + F ++ ++ I P+ +Y L++ ++ GK DEA +D+
Sbjct: 79 TYNSLIAAATKRCLLSRSLDLFEEMLRTGIRPDVWSYNSLMHCFFKLGKPDEANRVFQDI 138
Query: 153 ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI 212
++ S++ + + LC+ G YTG +
Sbjct: 139 ILTNLLPSSSTFNIMINGLCNNG-----------------------YTGYALS------- 168
Query: 213 QNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGL 272
Y + Q + F P LVT NI++ + A ++ +E+ E N
Sbjct: 169 ---LYRYLQRQGFV-PELVTYNILINGLCKSRKLNAARRILRELGESGN----------- 213
Query: 273 VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLE 332
+PD T+ T++ C ++++ ++ M G F+A + +I ++ G++E
Sbjct: 214 -VPDAITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCAVIAALTKTGRLEEAN 272
Query: 333 ITWEHLARAD 342
E +AR+D
Sbjct: 273 DIMEQMARSD 282
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 1/170 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD + Y V+ C R +Q+E F + ++K +G A +Y V+ + G+ +
Sbjct: 215 PDAITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCAVIAALTKTGRLEEANDI 274
Query: 115 FRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ +S I + ++Y ++N R GK + ++++E G+ + L LC
Sbjct: 275 MEQMARSDIDLDIVSYNTVMNLYCRNGKLEATYKLLDEIEEHGLECDEYTHTILIDGLCK 334
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
AG E AL + + K+ +V+ +I G + +A +F M+
Sbjct: 335 AGNVEGALRHLKNMTKMGFDSTLVAQNCVIDGLCKVGQLDHAIKMFASME 384
>gi|356516061|ref|XP_003526715.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49240-like [Glycine max]
Length = 632
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 142/345 (41%), Gaps = 72/345 (20%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P I NAVL A +R+ ++ + + + Q G P+ T+ LV + L C K + E
Sbjct: 126 PTIFTINAVLAALLRQSRYSDFLSLHRFITQAGVVPNIITHNLVFQTYLDCRKPDTALEH 185
Query: 115 FRKV--QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV-------------- 158
+++ P+ Y+VL+ L K + A+ +M+ RG
Sbjct: 186 YKQFLNDAPMNPSPTTYRVLIKGLIDNNKLERALEIKTEMDSRGFSPDPLVYHYLMLGHT 245
Query: 159 ------GSAALYYDLAR-------------CLCSA----GKCEEALMQMDKICKVANKPL 195
G LY +L CL G +EA+ +++ K
Sbjct: 246 RVSDGDGVLRLYEELRERLGGVVEDGVVFGCLMKGYFLKGMEKEAMECYEEVLG-KKKMS 304
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSP-----NLVTCNIMVKAYLEHGLFEEA 249
V Y ++ A +G + A +F++M K + P NL + N++V Y G FEEA
Sbjct: 305 AVGYNSVLDALSKNGRLDEALRLFDRMMKEYEPPKRLSVNLGSFNVIVDGYCGEGRFEEA 364
Query: 250 MKLFQEMAE-------------------------DSNHINREYDKKGLVIPDIYTFNTML 284
M++F+++ E ++ + E + KG V PD +T+ ++
Sbjct: 365 MEVFRKIGEYRGCSPDTLSFNNLIERLCDNGRIVEAEEVYGEMEGKG-VSPDEFTYGLLM 423
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
DAC E R DD +++M+ GL N + R++ + GK++
Sbjct: 424 DACFRENRADDSAAYFRKMVDSGLRPNLAVYNRLVDGLVKVGKID 468
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/210 (18%), Positives = 90/210 (42%), Gaps = 7/210 (3%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKP-----SATTYGLVMEVMLACGKYNLVY 112
V YN+VL+A + + + A + ++ ++ + P + ++ ++++ G++
Sbjct: 306 VGYNSVLDALSKNGRLDEALRLFDRMMKEYEPPKRLSVNLGSFNVIVDGYCGEGRFEEAM 365
Query: 113 EFFRKVQ--KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
E FRK+ + P+ L++ L+ L G+ EA +ME +G+ Y L
Sbjct: 366 EVFRKIGEYRGCSPDTLSFNNLIERLCDNGRIVEAEEVYGEMEGKGVSPDEFTYGLLMDA 425
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNL 230
+ +++ K+ +P + Y L+ + G I A F M ++
Sbjct: 426 CFRENRADDSAAYFRKMVDSGLRPNLAVYNRLVDGLVKVGKIDEAKGFFELMVKKLKMDV 485
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
+ M+K + G +E +++ + +D+
Sbjct: 486 ASYQFMMKVLSDEGRLDEMLQIVDTLLDDN 515
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 64/148 (43%), Gaps = 15/148 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT+++ ++ L G I E +V M + PD Y ++
Sbjct: 379 PDTLSFNNLIERLCDNGRIVEAEEVYGEMEG---------------KGVSPDEFTYGLLM 423
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+AC R + + + +++ G +P+ Y +++ ++ GK + FF + K
Sbjct: 424 DACFRENRADDSAAYFRKMVDSGLRPNLAVYNRLVDGLVKVGKIDEAKGFFELMVKKLKM 483
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDM 152
+ +Y+ ++ L EG+ DE + V+ +
Sbjct: 484 DVASYQFMMKVLSDEGRLDEMLQIVDTL 511
>gi|357494871|ref|XP_003617724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519059|gb|AET00683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 861
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 126/307 (41%), Gaps = 49/307 (15%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY----------GLVMEV--- 101
P I Y ++N ++R++ + AF V LK +G P Y GL+ E
Sbjct: 269 PSIYTYQEIINGLLKRRKNDEAFRVFNDLKDRGYFPDRVMYTTVIKGFCDMGLLAEARKL 328
Query: 102 ---MLACG------KYNLVYEFFRKVQ--------------KSYIPNALAYKVLVNTLWR 138
M+ G YN++ + KV+ + Y N ++Y +++ L+
Sbjct: 329 WFEMIQKGLVPNEYTYNVMIYGYCKVRDFAEARKLYDDMCGRGYAENVVSYSTMISGLYL 388
Query: 139 EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
GKTDEA+S +M R+GI Y L + LC G+ +A ++K+ +P V S
Sbjct: 389 HGKTDEALSLFHEMSRKGIARDLISYNSLIKGLCQEGELAKATNLLNKLLIQGLEPSVSS 448
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
+T LI+ G+ + A + M + P T + M+ + G F + M+ +M
Sbjct: 449 FTPLIKCLCKVGDTEGAMRLLKDMHDRHLEPIASTHDYMIIGLSKKGDFAQGMEWLLKML 508
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
+ P++ TF ++D E R DD+ +V M G R
Sbjct: 509 SWK------------LKPNMQTFEHLIDCLKRENRLDDILIVLDLMFREGYRLEKSRICS 556
Query: 318 MILDASR 324
++ S+
Sbjct: 557 LVTKFSK 563
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 127/310 (40%), Gaps = 26/310 (8%)
Query: 55 PDIVVYNAVLNACVR----RKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
PD V N L VR E F V LK+ G PSA+++ + + L G+ +L
Sbjct: 123 PDFVPKNDSLEGYVRLLGENGMVEEVFDVFVSLKKVGFLPSASSFNVCLLACLKVGRTDL 182
Query: 111 VYEFFRKVQKSYIPNALAYKV---LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
V++ + + +S + + + L+ E K + + +G+ ++ L
Sbjct: 183 VWKLYELMIESGVGVNIDVETVGCLIKAFCAENKVFNGYELLRQVLEKGLCVDNTVFNAL 242
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227
C + + + + + P + +Y +I L A +FN +K+
Sbjct: 243 INGFCKQKQYDRVSEILHIMIAMKCNPSIYTYQEIINGLLKRRKNDEAFRVFNDLKDRGY 302
Query: 228 -PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
P+ V ++K + + GL EA KL+ EM + KGLV P+ YT+N M+
Sbjct: 303 FPDRVMYTTVIKGFCDMGLLAEARKLWFEMIQ-----------KGLV-PNEYTYNVMIYG 350
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE-----LLEITWEHLARA 341
+ + + +Y M G N + MI GK + E++ + +AR
Sbjct: 351 YCKVRDFAEARKLYDDMCGRGYAENVVSYSTMISGLYLHGKTDEALSLFHEMSRKGIAR- 409
Query: 342 DRITPPALIK 351
D I+ +LIK
Sbjct: 410 DLISYNSLIK 419
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 78/370 (21%), Positives = 137/370 (37%), Gaps = 72/370 (19%)
Query: 4 YPDTV----AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVV 59
YPD V + LG+ G ++E+FDV S++ K G L P
Sbjct: 122 YPDFVPKNDSLEGYVRLLGENGMVEEVFDVFVSLK-------KVGFL--------PSASS 166
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQ---GQKPSATTYGLVMEVMLACGKYNLVYEFFR 116
+N L AC++ + + W L +L + G T G +++ A K YE R
Sbjct: 167 FNVCLLACLKVGRTD-LVWKLYELMIESGVGVNIDVETVGCLIKAFCAENKVFNGYELLR 225
Query: 117 KV---------------------QKSYI---------------PNALAYKVLVNTLWREG 140
+V QK Y P+ Y+ ++N L +
Sbjct: 226 QVLEKGLCVDNTVFNALINGFCKQKQYDRVSEILHIMIAMKCNPSIYTYQEIINGLLKRR 285
Query: 141 KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYT 200
K DEA D++ RG +Y + + C G EA ++ + P +Y
Sbjct: 286 KNDEAFRVFNDLKDRGYFPDRVMYTTVIKGFCDMGLLAEARKLWFEMIQKGLVPNEYTYN 345
Query: 201 GLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
+I + A +++ M + N+V+ + M+ HG +EA+ LF EM+
Sbjct: 346 VMIYGYCKVRDFAEARKLYDDMCGRGYAENVVSYSTMISGLYLHGKTDEALSLFHEMS-- 403
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
+KG + D+ ++N+++ E + ++L GL + +I
Sbjct: 404 ---------RKG-IARDLISYNSLIKGLCQEGELAKATNLLNKLLIQGLEPSVSSFTPLI 453
Query: 320 LDASRAGKVE 329
+ G E
Sbjct: 454 KCLCKVGDTE 463
>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
Length = 625
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 125/278 (44%), Gaps = 14/278 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
PD++ YN +++A ++ ++ A +L + P+ TY L+++ G
Sbjct: 202 FHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAE 261
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F +++K + P+A+ Y ++ L + G T +AV E M+R S A Y L
Sbjct: 262 AVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLY 321
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
A K AL ++ KP + ++T L+ A G + A IF Q++ P++
Sbjct: 322 GKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDV 381
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
N +++AY G A ++F M H+ E PD ++N M+DA
Sbjct: 382 YAYNALMEAYSRAGFPYGAAEIFSLM----QHMGCE--------PDRASYNIMVDAYGRA 429
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+D + V++ M G+ K H+ ++ SRAGKV
Sbjct: 430 GLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKV 467
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 133/328 (40%), Gaps = 42/328 (12%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S +PD + Y + GQ K L+ KK ++ LE + R P Y
Sbjct: 201 SFHPDVICYNLLIDAYGQ----KSLY-----------KKAESTYLELLEARCVPTEDTYA 245
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
+L A E A V ++++ G PSA Y ++ ++ G E F ++++
Sbjct: 246 LLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRD 305
Query: 122 YI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
P+ Y +L+N + K+ A+ +M + + + L G CE+A
Sbjct: 306 RCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKA 365
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
+++ + +P V +Y L++A +G AA IF+ M++ C P+ + NIMV A
Sbjct: 366 EEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDA 425
Query: 240 YLEHGLFEEAMKLFQEM------------------------AEDSNHINREYDKKGLVIP 275
Y GL E+A +F+ M I + K G + P
Sbjct: 426 YGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSG-IKP 484
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRM 303
D + N+ML+ +++ +E V M
Sbjct: 485 DTFVLNSMLNLYGRLGQFEKMEEVLTAM 512
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 124/310 (40%), Gaps = 35/310 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P T Y + G+A V MRS + +P+I + A++
Sbjct: 309 PSTATYTMLINLYGKASKSYMALKVFHEMRS---------------QKCKPNICTFTALV 353
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
NA R E A + +QL++ G +P Y +ME G E F +Q
Sbjct: 354 NAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCE 413
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG---KCEEA 180
P+ +Y ++V+ R G ++A + E M+R GI + + L AG KCEE
Sbjct: 414 PDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEI 473
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NLVTCNIMVKA 239
+ QM K KP ++ G + + M+ P ++ T NI++
Sbjct: 474 VNQMH---KSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINI 530
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
Y G F +LF+ + + +IPD+ T+ + + A + K+++ V
Sbjct: 531 YGRAGFFARMEELFRSLPARN------------LIPDVVTWTSRIGAYSRRKQYNRCLEV 578
Query: 300 YKRMLHHGLH 309
++ M+ G +
Sbjct: 579 FEEMIDAGCY 588
>gi|147832566|emb|CAN63846.1| hypothetical protein VITISV_010038 [Vitis vinifera]
Length = 457
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/331 (22%), Positives = 141/331 (42%), Gaps = 37/331 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ + I + VI M+ + + PD++ YN+++
Sbjct: 40 PDVVTYNTLLSAYSRFVGIDAAYSVIHRMK---------------EAGISPDVITYNSLI 84
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
A +R + + +++ + G +P +Y +M GK + F+ + + +
Sbjct: 85 AAATKRCLLSRSLDLFEEMLRTGIRPDVWSYNSLMHCFFKLGKPDEANRVFQDIILTNLL 144
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P++ + +++N L G T A+S ++R+G V Y L LC + K A
Sbjct: 145 PSSSTFNIMINGLCNNGYTGYALSLYRYLQRQGFVPELVTYNILINGLCKSRKLNAARRI 204
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--FCSPNLVTCNIMVKAYL 241
+ ++ + N P ++YT +++ C S + IF++MK+ + C + + A
Sbjct: 205 LRELGESGNVPDAITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCAV-IAALT 263
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G EEA + ++MA + DI ++NT+++ R LE YK
Sbjct: 264 KTGRLEEANDIMEQMARSD------------IDLDIVSYNTVMNLYC---RNGKLEATYK 308
Query: 302 ---RMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ HGL + H +I +AG VE
Sbjct: 309 LLDEIEEHGLECDEYTHTILIDGLCKAGNVE 339
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 130/310 (41%), Gaps = 55/310 (17%)
Query: 42 KTGTLERWDP--------RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSAT 93
K G LE+ + L PD+V YN +L+A R + A+ V+ ++K+ G P
Sbjct: 19 KVGQLEKAEAVVIDGIRLGLLPDVVTYNTLLSAYSRFVGIDAAYSVIHRMKEAGISPDVI 78
Query: 94 TYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDM 152
TY ++ + + F ++ ++ I P+ +Y L++ ++ GK DEA +D+
Sbjct: 79 TYNSLIAAATKRCLLSRSLDLFEEMLRTGIRPDVWSYNSLMHCFFKLGKPDEANRVFQDI 138
Query: 153 ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI 212
++ S++ + + LC+ G YTG +
Sbjct: 139 ILTNLLPSSSTFNIMINGLCNNG-----------------------YTGYALS------- 168
Query: 213 QNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGL 272
Y + Q + F P LVT NI++ + A ++ +E+ E N
Sbjct: 169 ---LYRYLQRQGFV-PELVTYNILINGLCKSRKLNAARRILRELGESGN----------- 213
Query: 273 VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLE 332
+PD T+ T++ C ++++ ++ M G F+A + +I ++ G++E
Sbjct: 214 -VPDAITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCAVIAALTKTGRLEEAN 272
Query: 333 ITWEHLARAD 342
E +AR+D
Sbjct: 273 DIMEQMARSD 282
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 1/170 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD + Y V+ C R +Q+E F + ++K +G A +Y V+ + G+ +
Sbjct: 215 PDAITYTTVMKCCFRSRQFEQGFEIFSEMKSKGYAFDAFSYCAVIAALTKTGRLEEANDI 274
Query: 115 FRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ +S I + ++Y ++N R GK + ++++E G+ + L LC
Sbjct: 275 MEQMARSDIDLDIVSYNTVMNLYCRNGKLEATYKLLDEIEEHGLECDEYTHTILIDGLCK 334
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
AG E AL + + K+ +V+ +I G + +A +F M+
Sbjct: 335 AGNVEGALRHLKNMTKMGFDSTLVAQNCVIDGLCKVGQLDHAIKMFASME 384
>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Vitis vinifera]
Length = 587
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 125/278 (44%), Gaps = 14/278 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
PD++ YN +++A ++ ++ A +L + P+ TY L+++ G
Sbjct: 164 FHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGLLEKAE 223
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F +++K + P+A+ Y ++ L + G T +AV E M+R S A Y L
Sbjct: 224 AVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLY 283
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
A K AL ++ KP + ++T L+ A G + A IF Q++ P++
Sbjct: 284 GKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDV 343
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
N +++AY G A ++F M H+ E PD ++N M+DA
Sbjct: 344 YAYNALMEAYSRAGFPYGAAEIFSLM----QHMGCE--------PDRASYNIMVDAYGRA 391
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+D + V++ M G+ K H+ ++ SRAGKV
Sbjct: 392 GLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKV 429
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 133/328 (40%), Gaps = 42/328 (12%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S +PD + Y + GQ K L+ KK ++ LE + R P Y
Sbjct: 163 SFHPDVICYNLLIDAYGQ----KSLY-----------KKAESTYLELLEARCVPTEDTYA 207
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
+L A E A V ++++ G PSA Y ++ ++ G E F ++++
Sbjct: 208 LLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRD 267
Query: 122 YI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
P+ Y +L+N + K+ A+ +M + + + L G CE+A
Sbjct: 268 RCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKA 327
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
+++ + +P V +Y L++A +G AA IF+ M++ C P+ + NIMV A
Sbjct: 328 EEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDA 387
Query: 240 YLEHGLFEEAMKLFQEMAE------------------------DSNHINREYDKKGLVIP 275
Y GL E+A +F+ M I + K G + P
Sbjct: 388 YGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSG-IKP 446
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRM 303
D + N+ML+ +++ +E V M
Sbjct: 447 DTFVLNSMLNLYGRLGQFEKMEEVLTAM 474
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 124/310 (40%), Gaps = 35/310 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P T Y + G+A V MRS + +P+I + A++
Sbjct: 271 PSTATYTMLINLYGKASKSYMALKVFHEMRS---------------QKCKPNICTFTALV 315
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
NA R E A + +QL++ G +P Y +ME G E F +Q
Sbjct: 316 NAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCE 375
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG---KCEEA 180
P+ +Y ++V+ R G ++A + E M+R GI + + L AG KCEE
Sbjct: 376 PDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEI 435
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NLVTCNIMVKA 239
+ QM K KP ++ G + + M+ P ++ T NI++
Sbjct: 436 VNQMH---KSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINI 492
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
Y G F +LF+ + + +IPD+ T+ + + A + K+++ V
Sbjct: 493 YGRAGFFARMEELFRSLPARN------------LIPDVVTWTSRIGAYSRRKQYNRCLEV 540
Query: 300 YKRMLHHGLH 309
++ M+ G +
Sbjct: 541 FEEMIDAGCY 550
>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 966
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 112/239 (46%), Gaps = 3/239 (1%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDP-RLEPDIVVY 60
+ YP+ + Y ++ L +AG I++ +V + E D + P++V Y
Sbjct: 552 ACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTY 611
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
A++N + ++ A +L + G +P+ Y +++ G+ + E F ++ K
Sbjct: 612 GALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTK 671
Query: 121 -SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
Y+P+ Y L++ ++++G+ D A+ + M + + Y + LC G+ E+
Sbjct: 672 CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEK 731
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMV 237
AL + + K P VV+YT LI +G + +F QMK C+PN VT I++
Sbjct: 732 ALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILI 790
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 130/313 (41%), Gaps = 46/313 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + + +AG I++ D MRS P++V Y A+L
Sbjct: 485 PDVYTYTILIDSFCKAGLIEQAQSWFDEMRS---------------AGCSPNVVTYTALL 529
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM-------EVMLACGKY--------N 109
+A ++ KQ A + ++ P+A TY ++ E+ AC Y N
Sbjct: 530 HAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDN 589
Query: 110 LVYEFF--RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ +F+ K + PN + Y LVN L + K +A ++ M G + +Y L
Sbjct: 590 IESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDAL 649
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
C G+ + A ++ K P V +YT LI G + A + +QM K+ C
Sbjct: 650 VDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSC 709
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+PN+VT MV + G E+A+ L M +KKG P++ T+ ++D
Sbjct: 710 NPNVVTYTAMVDGLCKTGETEKALNLLSLM-----------EKKG-CSPNVVTYTALIDG 757
Query: 287 CAAEKRWD-DLEL 298
+ D LEL
Sbjct: 758 LGKAGKVDAGLEL 770
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/299 (20%), Positives = 128/299 (42%), Gaps = 21/299 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V Y +L +++KQ ++ + +G PS + + ++ Y Y+
Sbjct: 304 PNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKL 363
Query: 115 FRKVQKSYIPNA-LAYKVLVNTLW--REGKTDEAVSAVEDMERRGIVGSAAL----YYDL 167
F ++ P + Y + + ++ E E + E + +V S L +
Sbjct: 364 FNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANF 423
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-C 226
ARCLC GK E+A + ++ + P +YT +I + + A +F +MK
Sbjct: 424 ARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGV 483
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+P++ T I++ ++ + GL E+A F EM + P++ T+ +L A
Sbjct: 484 NPDVYTYTILIDSFCKAGLIEQAQSWFDEM------------RSAGCSPNVVTYTALLHA 531
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE-LLEITWEHLARADRI 344
K+ ++ RM+ + NA + +I +AG+++ E+ + + +D I
Sbjct: 532 YLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNI 590
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 118/235 (50%), Gaps = 13/235 (5%)
Query: 106 GKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
GK+ ++ +++ +K ++P+A Y ++ L + + D+A ++M++ G+ Y
Sbjct: 431 GKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTY 490
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-K 223
L C AG E+A D++ P VV+YT L+ A L S + A IF++M
Sbjct: 491 TILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVG 550
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKG----LVIPDIYT 279
+ C PN +T + ++ + G ++A +++ ++ S++I ++ +G + P++ T
Sbjct: 551 DACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVT 610
Query: 280 FNTMLDA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEI 333
+ +++ C A+K D +L+ ML G N +++ DA G ++ EI
Sbjct: 611 YGALVNGLCKAQKVSDAHDLL-DAMLAAGCEPN-----QIVYDALVDGFCKVGEI 659
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 77/351 (21%), Positives = 136/351 (38%), Gaps = 61/351 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + L QA + + F + M+ K G + PD+ Y ++
Sbjct: 450 PDASTYTKVITFLCQAKRVDKAFLLFQEMK-------KVG--------VNPDVYTYTILI 494
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE----FFRKVQK 120
++ + E A +++ G P+ TY ++ L K +Y+ F R V
Sbjct: 495 DSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYL---KSKQLYQANDIFHRMVGD 551
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSA----------------VEDMERRGIVGSAALY 164
+ PNA+ Y L++ L + G+ +A E + I + Y
Sbjct: 552 ACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTY 611
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
L LC A K +A +D + +P + Y L+ G I +A +F +M
Sbjct: 612 GALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTK 671
Query: 225 FCS--PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
C P++ T ++ + G + AMK+ +M +DS + P++ T+
Sbjct: 672 -CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCN------------PNVVTYTA 718
Query: 283 MLDACA----AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
M+D EK + L L+ K+ G N + +I +AGKV+
Sbjct: 719 MVDGLCKTGETEKALNLLSLMEKK----GCSPNVVTYTALIDGLGKAGKVD 765
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 117/259 (45%), Gaps = 28/259 (10%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S P+ V Y ++ L + G ++ +++ SL +KK P++V Y
Sbjct: 708 SCNPNVVTYTAMVDGLCKTGETEKALNLL----SLMEKK-----------GCSPNVVTYT 752
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
A+++ + + + + Q+K +G P+ TY +++ A G + + +++++
Sbjct: 753 ALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCAAGLLDDAHLLLDEMKQT 812
Query: 122 YIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ P L Y+ V + + ++ +E+ME A +Y L AG+ E A
Sbjct: 813 HWPKYLQGYRTTVQGFSK--RFLASLGLLEEMESHDTAPIAPVYGMLIDSFSKAGRLETA 870
Query: 181 L------MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTC 233
L M++ +A+K + +T LIQA S ++ A ++++M + P+L
Sbjct: 871 LELHKEMMEVSSSLNMASKDM---HTSLIQALCLSSQVEEAVALYSEMRRRGIVPDLSAF 927
Query: 234 NIMVKAYLEHGLFEEAMKL 252
+VK +E + EA++L
Sbjct: 928 VCLVKGLIERNKWNEALQL 946
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 86/209 (41%), Gaps = 9/209 (4%)
Query: 54 EPDIVVYNAVLNACVRR----KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
E D V +LN VRR W A L +LK G +PSA TY +++V+ + G+
Sbjct: 162 EDDRDVLGRLLNVLVRRCCLQGLWGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVE 221
Query: 110 LVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
+ + +++ S + + L +EG+ +A+ +ER L +
Sbjct: 222 MAFRVQKEMSASGFCMDRSTVGSFAQALCKEGRWGDALDL---LEREDFKLDTVLCTQMI 278
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCS 227
L A EA+ + ++ + P VV+Y L+ L + I N M C+
Sbjct: 279 SGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCN 338
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
P+ N +V Y + A KLF M
Sbjct: 339 PSPSLFNSLVHTYCNAEDYAYAYKLFNRM 367
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 42/222 (18%), Positives = 82/222 (36%), Gaps = 52/222 (23%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ LG+AG + ++ M++ P+ V Y ++
Sbjct: 746 PNVVTYTALIDGLGKAGKVDAGLELFMQMKT---------------KGCAPNYVTYRILI 790
Query: 65 NAC---------------VRRKQWE------------------GAFWVLQQLKQQGQKPS 91
N C +++ W + +L++++ P
Sbjct: 791 NHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFLASLGLLEEMESHDTAPI 850
Query: 92 ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYK----VLVNTLWREGKTDEAVS 147
A YG++++ G+ E +++ + +A K L+ L + +EAV+
Sbjct: 851 APVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLIQALCLSSQVEEAVA 910
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK 189
+M RRGIV + + L + L K EAL IC+
Sbjct: 911 LYSEMRRRGIVPDLSAFVCLVKGLIERNKWNEALQLCYGICQ 952
>gi|242074484|ref|XP_002447178.1| hypothetical protein SORBIDRAFT_06g029920 [Sorghum bicolor]
gi|241938361|gb|EES11506.1| hypothetical protein SORBIDRAFT_06g029920 [Sorghum bicolor]
Length = 643
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 140/309 (45%), Gaps = 33/309 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P + Y + L AG + +V D+M + + R+ PD+V YN ++
Sbjct: 205 PSRLTYNCLLDGLVNAGLLDTAINVFDAMST--------------EDRVRPDVVSYNILI 250
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
R + + L L++Q + P TY +M+ + G + F+++++ +
Sbjct: 251 KGYCRAGRTQDGMSRLADLREQAELAPDKVTYLTLMQRHYSEGTFPQCIALFQEMEERGM 310
Query: 124 PNAL---AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ AY +++ L ++GK EA++ E M +RG +AA+Y L + G+ +EA
Sbjct: 311 GKEIPQHAYVLVIGALSKDGKPFEALAVFERMLKRGCPANAAMYTALIDSMGKLGREKEA 370
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACL-DSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVK 238
+ +++ + V+Y G+I CL GN++ A F ++ + N + ++
Sbjct: 371 MALFERMKASGIELDAVTY-GVIVNCLCRFGNMEEALSCFRSCVEKGVAVNAIFYTSLID 429
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ + G+ ++A +LF+EM KG V PD Y +N ++DA R D
Sbjct: 430 GFGKTGMVDQAKELFEEMI-----------AKGFV-PDSYCYNVLIDALVKAGRTDIACA 477
Query: 299 VYKRMLHHG 307
Y+RM G
Sbjct: 478 FYERMEDDG 486
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 96/237 (40%), Gaps = 2/237 (0%)
Query: 29 VIDSMRSLPKKKFKTGTLERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG 87
+IDSM L ++K ER +E D V Y ++N R E A + ++G
Sbjct: 357 LIDSMGKLGREKEAMALFERMKASGIELDAVTYGVIVNCLCRFGNMEEALSCFRSCVEKG 416
Query: 88 QKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAV 146
+A Y +++ G + E F + + K ++P++ Y VL++ L + G+TD A
Sbjct: 417 VAVNAIFYTSLIDGFGKTGMVDQAKELFEEMIAKGFVPDSYCYNVLIDALVKAGRTDIAC 476
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
+ E ME G + Y L L K EEAL D + P ++ L
Sbjct: 477 AFYERMEDDGCDQTVYTYTILIDGLFKEHKNEEALKFWDSMIDKGITPTAAAFRVLANGL 536
Query: 207 LDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
SG A I +++ M+ + G F++A KL + + +
Sbjct: 537 CLSGKFSRAWRILDELAPMGVIPETAHEDMINVLCKTGRFKQACKLADGIVQKGREV 593
>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Brachypodium distachyon]
Length = 757
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 106/236 (44%), Gaps = 14/236 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+EPD+V +N V++A R +Q A +L+++ P TT+ +ME + G
Sbjct: 192 IEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAAL 251
Query: 113 EF-FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
R + P ++ VL+N + G+ +A+ ++ G + L
Sbjct: 252 RLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGL 311
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C G + AL + + + +P V +Y+ +I ++G ++ A I NQM + C P+
Sbjct: 312 CQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDT 371
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
T N ++ A EEA+ L RE KGL P++YTFN +++A
Sbjct: 372 TTFNTLIVALCTENQLEEALDL-----------ARELTVKGLS-PNVYTFNILINA 415
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/353 (21%), Positives = 139/353 (39%), Gaps = 47/353 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTLE---RW 49
PD V + ++ L +A + +++ M S L + + G++E R
Sbjct: 194 PDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRL 253
Query: 50 DPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
R+ P V N ++N + + A +QQ G +P T+ + +
Sbjct: 254 KARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQ 313
Query: 105 CGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + + +Q+ P+ Y ++N L G+ +EA V M G +
Sbjct: 314 NGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTT 373
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ L LC+ + EEAL ++ P V ++ LI A G+ A +F +MK
Sbjct: 374 FNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMK 433
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA------------------------E 258
+ C+P+ VT NI++ G +A+ L +EM E
Sbjct: 434 SSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIE 493
Query: 259 DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
++ + + D G + + TFNT++D +R DD + +M+ GL N
Sbjct: 494 EAEEVFDQMDVTG-IGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPN 545
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 114/254 (44%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT + ++ V L ++E D+ R L K L P++ +N ++
Sbjct: 369 PDTTTFNTLIVALCTENQLEEALDL---ARELTVKG------------LSPNVYTFNILI 413
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
NA + A + +++K G P TY ++++ + + GK + ++++ S P
Sbjct: 414 NALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCP 473
Query: 125 NA-LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y +++ L + + +EA + M+ GI +A + L LC+A + ++A
Sbjct: 474 QSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAEL 533
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+D++ +P V+Y ++ GNI AA I M N ++VT ++ +
Sbjct: 534 VDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCK 593
Query: 243 HGLFEEAMKLFQEM 256
+ A+KL + M
Sbjct: 594 ARRTQAALKLLRGM 607
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 120/291 (41%), Gaps = 40/291 (13%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQ----QLKQQGQKPSATTYGLVMEVMLAC 105
D L P VY + +R+ GAF +++ +++++G + GLV + +
Sbjct: 83 DDGLTPSRDVYEEI----IRKLGTAGAFDLMKVLVGEMRREGHE---VGLGLVQSFIGSY 135
Query: 106 GKYNLVYEFFRKVQK-----SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ L + F V N Y L+ L K SA +M +GI
Sbjct: 136 ARLQLFDDAFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPD 195
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
+ + LC A + A++ ++++ P ++T L++ ++ G+I+ A +
Sbjct: 196 VVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKA 255
Query: 221 QMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED------------------SN 261
+M CSP VT N+++ Y + G +A+ Q+ D +
Sbjct: 256 RMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNG 315
Query: 262 HINREYDKKGLVI-----PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
H++ GL++ PD+YT++T+++ ++ + + +M+ G
Sbjct: 316 HVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSG 366
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/261 (20%), Positives = 103/261 (39%), Gaps = 22/261 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR--SLPKKKFKTGTLERWDPRLEPDIVVYNA 62
PD V Y + L +G + + D++ M P+ V YN
Sbjct: 439 PDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQST-----------------VTYNT 481
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKS 121
+++ +R++ E A V Q+ G +A T+ +++ + + + E + + +
Sbjct: 482 IIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEG 541
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
PN + Y ++ ++G +A ++ M G Y L LC A + + AL
Sbjct: 542 LQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAAL 601
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAY 240
+ + KP +Y +IQ+ N ++A +F +M P+ T I+ +
Sbjct: 602 KLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGL 661
Query: 241 LE-HGLFEEAMKLFQEMAEDS 260
G +EA EMA++
Sbjct: 662 CRGGGPIKEAFDFLVEMADNG 682
>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
Length = 597
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 111/257 (43%), Gaps = 23/257 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y S+ L + KE +++ M SL + PDIV +N ++
Sbjct: 266 PDIFTYTSLIQGLCKFSRWKEASALLNEMTSL---------------NIMPDIVTFNVLV 310
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE----FFRKVQK 120
+ + + A VL+ + + G +P+ TY +M + V E F + K
Sbjct: 311 DTFCKEGKVSEALGVLKTMTEMGVEPNVVTYS---SLMYGYSLWTDVVEARKLFHVMITK 367
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
PN +Y +L+N + + DEA+ +M +G+ + Y L C GK EA
Sbjct: 368 GCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREA 427
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKA 239
+C N P + +Y+ L+ G + A +F M++ + PNLV I+V A
Sbjct: 428 QDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHA 487
Query: 240 YLEHGLFEEAMKLFQEM 256
+ G ++A KLF E+
Sbjct: 488 MCKSGNHKDARKLFSEL 504
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 127/301 (42%), Gaps = 25/301 (8%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P+I + +N + ++ + F VL ++ + G +P+ T+ ++ + G++
Sbjct: 124 LSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAV 183
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F V K P+ Y ++N L + G+T A ++ ME G + Y L L
Sbjct: 184 ELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSL 243
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C EAL + P + +YT LIQ + A+ + N+M + P++
Sbjct: 244 CRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDI 303
Query: 231 VTCNIMVKAYLEHGLFEEAM---KLFQEMAEDSNHINREYDKKGLVI------------- 274
VT N++V + + G EA+ K EM + N + G +
Sbjct: 304 VTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHV 363
Query: 275 -------PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
P+I+++N +++ KR D+ ++ M+H GL N + +I + GK
Sbjct: 364 MITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGK 423
Query: 328 V 328
+
Sbjct: 424 L 424
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/305 (20%), Positives = 133/305 (43%), Gaps = 29/305 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V + ++ L + G + ++ D M + +PD+ YN ++
Sbjct: 161 PTIVTFTTLINGLCKVGEFAQAVELFDDMVA---------------KGCQPDVYTYNTII 205
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
N + + A +L+++++ G +P+ TY +++ + N + F ++ K
Sbjct: 206 NGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGIS 265
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y L+ L + + EA + + +M I+ + L C GK EAL
Sbjct: 266 PDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGV 325
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + ++ +P VV+Y+ L+ ++ A +F+ M C PN+ + NI++ Y +
Sbjct: 326 LKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCK 385
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+EAM+LF EM +GL P+ ++NT++ + + + +++
Sbjct: 386 AKRIDEAMQLFNEMIH-----------QGLT-PNNVSYNTLIHGFCQLGKLREAQDLFRN 433
Query: 303 MLHHG 307
M +G
Sbjct: 434 MCTNG 438
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 114/261 (43%), Gaps = 15/261 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVL-QQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
P I+ + +L+A V+ Q+ L +Q++ G P+ T + M + +L +
Sbjct: 90 PCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFS 149
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
KV K + P + + L+N L + G+ +AV +DM +G Y + LC
Sbjct: 150 VLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLC 209
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLV 231
G+ A + K+ + +P +V+Y+ LI + + A IF+ MK SP++
Sbjct: 210 KIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIF 269
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T +++ + ++EA L EM + ++PDI TFN ++D E
Sbjct: 270 TYTSLIQGLCKFSRWKEASALLNEMTSLN------------IMPDIVTFNVLVDTFCKEG 317
Query: 292 RWDDLELVYKRMLHHGLHFNA 312
+ + V K M G+ N
Sbjct: 318 KVSEALGVLKTMTEMGVEPNV 338
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/276 (19%), Positives = 113/276 (40%), Gaps = 22/276 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSL---PKKKFKTGTL---ERWDPRLE---- 54
PD V + + T + G + E V+ +M + P + + W +E
Sbjct: 301 PDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKL 360
Query: 55 ----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
P+I YN ++N + K+ + A + ++ QG P+ +Y ++
Sbjct: 361 FHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQ 420
Query: 105 CGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK + FR + +P+ Y +L++ ++G +A M+ + + +
Sbjct: 421 LGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVM 480
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L +C +G ++A ++ +P V YT +I G + A F M+
Sbjct: 481 YTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNME 540
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
+ C P+ ++ N++++ L+H A+ L EM +
Sbjct: 541 ADGCPPDEISYNVIIRGLLQHKDESRALLLVGEMRD 576
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 66/156 (42%), Gaps = 16/156 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + + G++ + F + +M+S L+P++V+Y ++
Sbjct: 441 PDLFTYSILLDGFCKQGYLGKAFRLFRAMQS---------------TYLKPNLVMYTILV 485
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+A + + A + +L QG +P Y ++ + G + E FR ++ P
Sbjct: 486 HAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCP 545
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+ ++Y V++ L + A+ V +M RG +
Sbjct: 546 PDEISYNVIIRGLLQHKDESRALLLVGEMRDRGFIA 581
>gi|414887034|tpg|DAA63048.1| TPA: crs2 associated factor1 [Zea mays]
Length = 617
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 120/263 (45%), Gaps = 11/263 (4%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD Y+ +++A R +WE A +L++++ G KPS+ + ++ G + +
Sbjct: 332 PDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAV 391
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
R++Q S + P+ Y V+++T + A+ A M GI + L C
Sbjct: 392 LREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCK 451
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVT 232
G+ + A +++ + P +Y +I + + + + ++MK PN++T
Sbjct: 452 GGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIIT 511
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDS--------NHINREYDKKGLVIPDIYTFNTML 284
+V Y G ++EA+ + M D + + Y ++GL PD+ T+ T++
Sbjct: 512 YTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLR-PDVITYTTLM 570
Query: 285 DACAAEKRWDDLELVYKRMLHHG 307
A +++D + ++Y+ M+ G
Sbjct: 571 KALIRVEQFDKVPVIYEEMITSG 593
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 121/293 (41%), Gaps = 28/293 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P + A ++ LG AG + E +L + F G ++P YNA+L
Sbjct: 261 PRSNAVTALISALGTAGRVAE-------AEALFLEFFLAG-------EIKPRTRAYNALL 306
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
VR + A VL ++ Q G P TY L+++ G++ ++++ +
Sbjct: 307 KGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVK 366
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P++ + ++ G +A + + +M+ G+ Y + A+
Sbjct: 367 PSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDA 426
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+K+ + +P VV++ LI A G AA +F +M+ + C P T NIM+ E
Sbjct: 427 FNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGE 486
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
+E + EM E +GLV P+I T+ T++D R+ +
Sbjct: 487 QEHWEGVEAMLSEMKE-----------QGLV-PNIITYTTLVDVYGRSGRYKE 527
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 107/257 (41%), Gaps = 19/257 (7%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY--- 108
RLEPD +++ +++A R + A +L + G P + ++ + G+
Sbjct: 223 RLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEA 282
Query: 109 -NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
L EFF + P AY L+ R A +++M + G+ A Y L
Sbjct: 283 EALFLEFF--LAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLL 340
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFC 226
AG+ E A + + ++ KP ++ ++ D G+ Q A + +M+ +
Sbjct: 341 VDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGV 400
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
P+ N+M+ + ++ AM F +M E+ + PD+ T+NT++DA
Sbjct: 401 RPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEG------------IEPDVVTWNTLIDA 448
Query: 287 CAAEKRWDDLELVYKRM 303
R D +++ M
Sbjct: 449 HCKGGRHDRAAELFEEM 465
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/227 (20%), Positives = 97/227 (42%), Gaps = 33/227 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + T G+ + D + MR + +EPD+V +N ++
Sbjct: 402 PDRHFYNVMIDTFGKYNCLGHAMDAFNKMR---------------EEGIEPDVVTWNTLI 446
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+A + + + A + +++++ P TTY +++ ++ + V ++ ++ +
Sbjct: 447 DAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLV 506
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y LV+ R G+ EA+ +E M+ G+ S +Y+ L G
Sbjct: 507 PNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGL------- 559
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
+P V++YT L++A + I+ +M + C+P+
Sbjct: 560 ---------RPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPD 597
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 76/195 (38%), Gaps = 17/195 (8%)
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAV---SAVEDMERRGIVGSAALYYDLARCLCSAG 175
+ ++P+ +Y L+ +L +A + D+ + A L+ DL A
Sbjct: 183 EHDFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFARAA 242
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ--MKNFCSPNLVTC 233
+ AL + + P + T LI A +G + A +F + + P
Sbjct: 243 LPDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAY 302
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N ++K Y+ + A ++ EM++ V PD T++ ++DA RW
Sbjct: 303 NALLKGYVRIASLKNAEQVLDEMSQCG------------VAPDEATYSLLVDAYTRAGRW 350
Query: 294 DDLELVYKRMLHHGL 308
+ ++ K M G+
Sbjct: 351 ESARILLKEMEADGV 365
>gi|296081308|emb|CBI17752.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 2/208 (0%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
YNA R Q+ A V + + QG+ PS + +++ + + + VY + K++
Sbjct: 155 YNAFAYCLNRSNQFRAADQVPELMNMQGKPPSEKQFEILIRMHIDANRGLRVYYVYEKMK 214
Query: 120 KSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
K I P Y +++ L + G D A+S ED + G+V + Y L + LC AG+ +
Sbjct: 215 KFGIKPRVFLYNRIMDGLVKTGHLDLAMSVYEDFKEDGLVEESVTYMILVKGLCKAGRID 274
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMV 237
E L +D++ KP V +YT +++ + GN+ ++ +M K+ P+++ +V
Sbjct: 275 EVLELLDRMRGNLCKPDVFAYTAMVKVLVAEGNLDGCLRVWEEMRKDKVEPDVMAYTTLV 334
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINR 265
A E +LF+EM + I+R
Sbjct: 335 AALCNGNRVGEGFELFKEMKQKKYLIDR 362
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 4/186 (2%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YIPNALAYKVLVN 134
A V + LK +G S + Y ++ME + G+ F ++ S + P++ Y +
Sbjct: 486 ALEVFEHLKAKGY-CSISIYNILMEAIHRTGEVKKALSLFDDIKDSNFKPDSSTYSNAII 544
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM-DKICKVANK 193
G EA + + + S A Y L + LC + + + A+M + D + V +
Sbjct: 545 CFVEVGDVQEACACYNKIIEMCQLPSVAAYRSLVKGLCKSEEIDAAIMLVRDCLANVTSG 604
Query: 194 PLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKL 252
P+ YT I SGN + + N+M + C+P+ VT + ++ +HG EEA K+
Sbjct: 605 PMEFKYTLTILHACKSGNAEKVIDVLNEMMQEGCTPDEVTYSALISGMCKHGTLEEARKV 664
Query: 253 FQEMAE 258
F M E
Sbjct: 665 FSNMRE 670
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 106/249 (42%), Gaps = 20/249 (8%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P + +YN +++ V+ + A V + K+ G + TY ++++ + G+ + V
Sbjct: 218 IKPRVFLYNRIMDGLVKTGHLDLAMSVYEDFKEDGLVEESVTYMILVKGLCKAGRIDEVL 277
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E +++ + P+ AY +V L EG D + E+M + + Y L L
Sbjct: 278 ELLDRMRGNLCKPDVFAYTAMVKVLVAEGNLDGCLRVWEEMRKDKVEPDVMAYTTLVAAL 337
Query: 172 CSA---GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCS 227
C+ G+ E +M + + ++ + Y LI+ + + + +A + M +
Sbjct: 338 CNGNRVGEGFELFKEMKQKKYLIDRAI---YGSLIEGFVVNERVGSACDLLKDLMDSGYR 394
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
+L N +++ ++A KLFQ +S + P+ T ML +
Sbjct: 395 ADLAIYNSLIEGMCNVKQVDKAYKLFQVTVHES------------LEPNFLTVKPMLVSY 442
Query: 288 AAEKRWDDL 296
A KR DD
Sbjct: 443 AEMKRMDDF 451
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 121/289 (41%), Gaps = 46/289 (15%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRS----------------LPKKKFKTGTLERW 49
++V Y + L +AG I E+ +++D MR L + G L W
Sbjct: 256 ESVTYMILVKGLCKAGRIDEVLELLDRMRGNLCKPDVFAYTAMVKVLVAEGNLDGCLRVW 315
Query: 50 DP----RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
+ ++EPD++ Y ++ A + F + +++KQ+ YG ++E +
Sbjct: 316 EEMRKDKVEPDVMAYTTLVAALCNGNRVGEGFELFKEMKQKKYLIDRAIYGSLIEGFVVN 375
Query: 106 GKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEA-----VSAVEDMERRGIVG 159
+ + + + S Y + Y L+ + + D+A V+ E +E +
Sbjct: 376 ERVGSACDLLKDLMDSGYRADLAIYNSLIEGMCNVKQVDKAYKLFQVTVHESLEPNFLTV 435
Query: 160 SAAL--YYDLARC--LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN-IQN 214
L Y ++ R CS L QM K+ P++ + ++ G ++
Sbjct: 436 KPMLVSYAEMKRMDDFCS------LLGQMQKL----GFPVIDDLSKFFSVMIEKGERLKL 485
Query: 215 AAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSN 261
A +F + K +CS ++ NI+++A G ++A+ LF ++ +DSN
Sbjct: 486 ALEVFEHLKAKGYCSISIY--NILMEAIHRTGEVKKALSLFDDI-KDSN 531
>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
Length = 866
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 139/328 (42%), Gaps = 36/328 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y + LG+ G +++ D+ + M + + + Y A++
Sbjct: 141 PNEHIYTIMISLLGREGLLEKCSDIFEEMGAHGVSR---------------SVFSYTALI 185
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE----FFRKVQK 120
N+ R ++E + +L+++K++ PS TY V+ +C + L +E F +++
Sbjct: 186 NSYGRNGKYEVSLELLERMKKERVSPSILTYNTVIN---SCARGGLDWEGLLGLFAEMRH 242
Query: 121 SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
I P+ + Y L+ G DEA M G+V Y L + ++
Sbjct: 243 EGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDK 302
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVK 238
+ ++ N P + SY L++A GNI++A +F M+ C PN T +I++
Sbjct: 303 VSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLG 362
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
Y +HG ++E +LF EM + PD T+NT++D + ++
Sbjct: 363 LYGKHGRYDEVRELFLEMKVSNTE------------PDAATYNTLIDVFGEGGYFKEVVT 410
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAG 326
++ M + N + + +I + G
Sbjct: 411 LFHDMAEENVEPNMETYEGLIFACGKGG 438
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 123/284 (43%), Gaps = 21/284 (7%)
Query: 52 RLEPDIVVYNAVLNACVRRK-QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
R+ P I+ YN V+N+C R WEG + +++ +G +P TY ++ AC L
Sbjct: 208 RVSPSILTYNTVINSCARGGLDWEGLLGLFAEMRHEGIQPDIVTYN---TLLCACSNRGL 264
Query: 111 VYE---FFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
E FR + + +P+ Y LV+T + + D+ +++M G V + Y
Sbjct: 265 GDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVPEISSYNV 324
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NF 225
L G E+A + + P +Y+ L+ G +F +MK +
Sbjct: 325 LLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSN 384
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
P+ T N ++ + E G F+E + LF +MAE++ V P++ T+ ++
Sbjct: 385 TEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEEN------------VEPNMETYEGLIF 432
Query: 286 ACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
AC DD + + M G+ ++K + +I +A E
Sbjct: 433 ACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYE 476
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/361 (22%), Positives = 142/361 (39%), Gaps = 77/361 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + T G+ + +D + L K+ TG + P+I YN +L
Sbjct: 282 PDITTYTYLVDTFGK-------LNRLDKVSELLKEMASTGNV--------PEISSYNVLL 326
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
A R E A V + +++ G P+A TY +++ + G+Y+ V E F +++ S
Sbjct: 327 EAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTE 386
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDM------------------------------- 152
P+A Y L++ G E V+ DM
Sbjct: 387 PDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKI 446
Query: 153 ----ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+G++ S+ Y + A EEAL+ ++ + ++ +KP + +Y LI
Sbjct: 447 LLHMSEKGMIPSSKAYTGVIEAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFAR 506
Query: 209 SGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE- 266
G + I +M +F + + N +++ + + G FEEA+K + EM E S + E
Sbjct: 507 GGLYKETEAILLKMGDFGVARERDSFNGVIEGFRQGGQFEEAIKAYVEM-EKSRLVPDER 565
Query: 267 --------YDKKGLV---------------IPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
Y GLV +P++ + ML A RW++ + M
Sbjct: 566 TLEAVLSVYCIAGLVDESVEQFQEIKASGILPNVMCYCMMLAVYAKSDRWNEAYELLDEM 625
Query: 304 L 304
L
Sbjct: 626 L 626
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 16/223 (7%)
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI--PNALAYKVLVNTLWREGKTDEAV 146
K S + LV + G + F+ +Q+ PN Y ++++ L REG ++
Sbjct: 104 KLSLNDFALVFKEFAQRGDWQRSLRLFKHMQRQIWCKPNEHIYTIMISLLGREGLLEKCS 163
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
E+M G+ S Y L GK E +L ++++ K P +++Y +I +C
Sbjct: 164 DIFEEMGAHGVSRSVFSYTALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVINSC 223
Query: 207 LDSG-NIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
G + + +F +M++ P++VT N ++ A GL +EA +F+ M E
Sbjct: 224 ARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNE------ 277
Query: 265 REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
G V+PDI T+ ++D R D + + K M G
Sbjct: 278 ------GGVVPDITTYTYLVDTFGKLNRLDKVSELLKEMASTG 314
>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
Length = 671
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/319 (22%), Positives = 134/319 (42%), Gaps = 49/319 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ L + G+ ++ SM +P++ YN ++
Sbjct: 164 PDVVTYGTLINGLCKVGNTSAAIRLLGSM---------------VQKNCQPNVFAYNTII 208
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
++ + +Q AF + ++ +G P TY ++ + ++ V ++ S I
Sbjct: 209 DSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIM 268
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ +++ +V+ L +EGK EA V+ M +RG+ + Y L C + +EA+
Sbjct: 269 PDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKV 328
Query: 184 MDKICKVANKPLVVSYTGLIQA-C----LDSG--------------NIQNAAYIFNQMK- 223
D + P V+SY LI C +D N+ A +F+ M
Sbjct: 329 FDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVC 388
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
C PN+++ N ++ Y + ++AM LF EM +IPD T++T+
Sbjct: 389 KGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQE------------LIPDTVTYSTL 436
Query: 284 LDA-CAAEKRWDDLELVYK 301
+ C E+ D + L ++
Sbjct: 437 IHGLCHVERLQDAIALFHE 455
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/374 (20%), Positives = 150/374 (40%), Gaps = 68/374 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL---------------- 46
P+ AY +I +L + + E F++ M + + F +L
Sbjct: 199 PNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATL 258
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E D ++ PD+V +N V++A + + A V+ ++ Q+G +P+ TY +M+
Sbjct: 259 LNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCL 318
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTD-------------------E 144
+ + + F V K +PN ++Y L+N + + D E
Sbjct: 319 LSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDE 378
Query: 145 AVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204
AV + M +G + + Y L C + ++A+ ++C+ P V+Y+ LI
Sbjct: 379 AVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIH 438
Query: 205 ACLDSGNIQNAAYIFNQMKNFCS--PNLVTCNIMVKAYLEHGLFEEAMKLFQEMA----- 257
+Q+A +F++M CS PNLVT I++ ++ EAM L + +
Sbjct: 439 GLCHVERLQDAIALFHEMVA-CSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLD 497
Query: 258 -------------------EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
E + + KGL PD++T++ M++ D+
Sbjct: 498 PDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQ-PDVWTYSIMINGLCRRGLLDEASK 556
Query: 299 VYKRMLHHGLHFNA 312
+++ M +G N
Sbjct: 557 LFREMDENGCTLNG 570
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/309 (19%), Positives = 122/309 (39%), Gaps = 29/309 (9%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P TV + + ++ + H L + M S + P+I
Sbjct: 55 MQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFG---------------IPPNIYTL 99
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQ 119
+ ++N+ + AF VL ++ + G +P T+ ++ + GK F K +
Sbjct: 100 HILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIG 159
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ + P+ + Y L+N L + G T A+ + M ++ + Y + LC + E
Sbjct: 160 EGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTE 219
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVK 238
A ++ P + +Y LI A + ++ A + N+M + P++V+ N +V
Sbjct: 220 AFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVD 279
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
A + G EA + +M + V P++ T+ ++D D+
Sbjct: 280 ALCKEGKVTEAHDVVDKMIQRG------------VEPNVVTYTALMDGHCLLSEMDEAVK 327
Query: 299 VYKRMLHHG 307
V+ M+ G
Sbjct: 328 VFDTMVCKG 336
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 104/267 (38%), Gaps = 31/267 (11%)
Query: 74 EGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP-NALAYKVL 132
+GA ++ + PS + ++ + ++ + ++ IP N +L
Sbjct: 43 DGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHIL 102
Query: 133 VNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVAN 192
+N+ + A S + + + G A + L R +C GK EAL DK+
Sbjct: 103 INSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGF 162
Query: 193 KPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAM 250
+P VV+Y LI GN A + M KN C PN+ N ++ + + EA
Sbjct: 163 RPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKN-CQPNVFAYNTIIDSLCKDRQVTEAF 221
Query: 251 KLFQEMAED-------------------------SNHINREYDKKGLVIPDIYTFNTMLD 285
LF EM + +N D K ++PD+ +FNT++D
Sbjct: 222 NLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSK--IMPDVVSFNTVVD 279
Query: 286 ACAAEKRWDDLELVYKRMLHHGLHFNA 312
A E + + V +M+ G+ N
Sbjct: 280 ALCKEGKVTEAHDVVDKMIQRGVEPNV 306
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 96/205 (46%), Gaps = 2/205 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYE 113
P+++ YN ++N + ++ + A ++ ++ +Q P TY ++ + + + +
Sbjct: 393 PNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIAL 452
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F V S IPN + Y++L++ L + EA++ ++ +E + + +C
Sbjct: 453 FHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCR 512
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
AG+ E A + +P V +Y+ +I G + A+ +F +M +N C+ N
Sbjct: 513 AGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCI 572
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMA 257
N + + +L + A++L QEM
Sbjct: 573 YNTITRGFLRNNETSRAIQLLQEMV 597
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PDI V N ++ R + E A + L +G +P TY +++ + G +
Sbjct: 496 LDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEAS 555
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+ FR++ ++ N Y + R +T A+ +++M RG A+
Sbjct: 556 KLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADAS 606
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 16/166 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV Y ++ L +++ + M + + P++V Y +L
Sbjct: 428 PDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQI---------------PNLVTYRILL 472
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ + + A +L+ ++ P + ++ M G+ + F + K
Sbjct: 473 DYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQ 532
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
P+ Y +++N L R G DEA +M+ G + +Y + R
Sbjct: 533 PDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITR 578
>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
Length = 332
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/326 (19%), Positives = 139/326 (42%), Gaps = 29/326 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y ++ + G + + + + M D R+ P++V YN+++
Sbjct: 10 PDVVSYSTVINGFFKEGDLDKTYSTYNEM---------------LDKRISPNVVTYNSII 54
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
A + + + A VL + + G P TY ++ + G+ F +K++ +
Sbjct: 55 AALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVE 114
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ L + G+ EA + M +RG+ Y L + + G E
Sbjct: 115 PDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGL 174
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+D + + P ++ L+ A ++ A +F++M+ +PN VT ++ +
Sbjct: 175 LDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCK 234
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G E+AM F++M ++ + PD +N+++ + +W+ E ++
Sbjct: 235 SGRVEDAMLYFEQMIDEG------------LRPDSIVYNSLIHSLCIFDKWEKAEELFLE 282
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV 328
ML G+ + +I + G+V
Sbjct: 283 MLDRGICLSTIFFNSIIDSHCKEGRV 308
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 118/267 (44%), Gaps = 18/267 (6%)
Query: 90 PSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSA 148
P +Y V+ G + Y + + + K PN + Y ++ L + D+A+
Sbjct: 10 PDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAMEV 69
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+ M + G++ Y + CS+G+ +EA++ + K+ +P VV+Y L+
Sbjct: 70 LTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCK 129
Query: 209 SGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
+G A IF+ M K P++ T +++ Y G E L M + H
Sbjct: 130 NGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH----- 184
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
P+ Y F+ ++ A A +++ ++ LV+ +M GL+ NA + +I ++G+
Sbjct: 185 -------PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGR 237
Query: 328 VELLEITWEHLA----RADRITPPALI 350
VE + +E + R D I +LI
Sbjct: 238 VEDAMLYFEQMIDEGLRPDSIVYNSLI 264
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 115/256 (44%), Gaps = 19/256 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y SI +G KE + MRS +EPD+V YN+++
Sbjct: 80 PDCMTYNSIVHGFCSSGQPKEAIVFLKKMRS---------------DGVEPDVVTYNSLM 124
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + A + + ++G KP TTYG +++ G ++ + ++ I
Sbjct: 125 DYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 184
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + +LV ++ K +EA+ M ++G+ +A Y + LC +G+ E+A++
Sbjct: 185 PNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLY 244
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
+++ +P + Y LI + + A +F +M + C + N ++ ++
Sbjct: 245 FEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFF-NSIIDSHC 303
Query: 242 EHGLFEEAMKLFQEMA 257
+ G E++KLF M
Sbjct: 304 KEGRVIESVKLFDLMV 319
>gi|293334951|ref|NP_001170632.1| uncharacterized protein LOC100384682 [Zea mays]
gi|238006488|gb|ACR34279.1| unknown [Zea mays]
gi|413925463|gb|AFW65395.1| hypothetical protein ZEAMMB73_565010 [Zea mays]
Length = 462
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 133/305 (43%), Gaps = 20/305 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD+V YN +L A R + V+ ++++ G +P A TY ++ G
Sbjct: 43 LPPDVVTYNTLLAAYCRVDGLDAGLAVVHRMREAGVRPDAVTYNSLITGADRSGLTVRAL 102
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F ++ +S + P++ +Y L++ L+R G + A DM RG+ A Y L L
Sbjct: 103 DLFDEMLRSGVAPDSWSYNALMHCLFRSGHPEHAYRVFADMADRGVAPCATTYNTLLDGL 162
Query: 172 CSAGKCEEALMQMDKICKVANKPL-VVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
AG A +M + + A P+ +V+Y +I SG + A + ++ + +PN
Sbjct: 163 LKAGHVTNAF-RMFRYLQRAGLPVGIVTYNTMINGLCKSGKVGYARMVLKELGRTEHAPN 221
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
VT ++K +G FE+ ++ F + E G I D + + T++ A
Sbjct: 222 AVTYTTVMKCCFRYGRFEQGLETFLSLLE------------GGYISDAFPYTTVISALVK 269
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRIT 345
+ R + + M+ G + + +I + GK+ ELL + E +D T
Sbjct: 270 KGRMQEANTYCELMIQSGSTLDNACYNTLIHLRCQEGKINDAFELLNMMEEGGLESDEYT 329
Query: 346 PPALI 350
L+
Sbjct: 330 FSILV 334
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 127/304 (41%), Gaps = 36/304 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ ++G D+ D M ++G + PD YNA++
Sbjct: 80 PDAVTYNSLITGADRSGLTVRALDLFDEM-------LRSG--------VAPDSWSYNALM 124
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ R E A+ V + +G P ATTY +++ +L G + FR +Q++ +P
Sbjct: 125 HCLFRSGHPEHAYRVFADMADRGVAPCATTYNTLLDGLLKAGHVTNAFRMFRYLQRAGLP 184
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ Y ++N L + GK A ++++ R +A Y + +C G+ E+ L
Sbjct: 185 VGIVTYNTMINGLCKSGKVGYARMVLKELGRTEHAPNAVTYTTVMKCCFRYGRFEQGLET 244
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMKNFCSPNLVTCNIMVKAYLE 242
+ + YT +I A + G +Q A Y +++ + + N ++ +
Sbjct: 245 FLSLLEGGYISDAFPYTTVISALVKKGRMQEANTYCELMIQSGSTLDNACYNTLIHLRCQ 304
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC-------AAEKRWDD 295
G +A +L M E G + D YTF+ +++ AAEK+
Sbjct: 305 EGKINDAFELLNMMEE------------GGLESDEYTFSILVNGLCKMGQIEAAEKQIWS 352
Query: 296 LELV 299
+E++
Sbjct: 353 MEMM 356
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 99/255 (38%), Gaps = 51/255 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y ++ L +AGH+ F + R L + G IV YN ++
Sbjct: 150 PCATTYNTLLDGLLKAGHVTNAFRMF---RYLQRAGLPVG------------IVTYNTMI 194
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE-FFRKVQKSYI 123
N + + A VL++L + P+A TY VM+ G++ E F ++ YI
Sbjct: 195 NGLCKSGKVGYARMVLKELGRTEHAPNAVTYTTVMKCCFRYGRFEQGLETFLSLLEGGYI 254
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA--L 181
+A Y +++ L ++G+ EA + E M + G A Y L C GK +A L
Sbjct: 255 SDAFPYTTVISALVKKGRMQEANTYCELMIQSGSTLDNACYNTLIHLRCQEGKINDAFEL 314
Query: 182 MQM-----------------DKICKV-----ANKPL-----------VVSYTGLIQACLD 208
+ M + +CK+ A K + VV+Y LI A
Sbjct: 315 LNMMEEGGLESDEYTFSILVNGLCKMGQIEAAEKQIWSMEMMGMQSNVVAYNCLIDALCK 374
Query: 209 SGNIQNAAYIFNQMK 223
+ A I + MK
Sbjct: 375 CHEVDAAIKILHSMK 389
>gi|359474892|ref|XP_002276432.2| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
chloroplastic-like [Vitis vinifera]
Length = 1115
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 141/299 (47%), Gaps = 36/299 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y ++ G+AG + + F MRS ++EPD VV+NA++
Sbjct: 560 PNVHTYGALIDGCGRAGQVAKAFGAYGIMRS---------------KKVEPDRVVFNALI 604
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQ--KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY 122
AC + + AF VL +++ + Q P T G +++ G+ + E ++ + +
Sbjct: 605 TACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACTNAGQVDRAREVYKMIDQYN 664
Query: 123 IPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
I Y + V++ + G + A S DM R+G+V L AGK + A
Sbjct: 665 IKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEMFLSALIDVAGHAGKLDAAF 724
Query: 182 MQMDKICKVANKPL-VVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
++ + ++ PL +VSY+ L+ AC ++ N Q A ++ +K+ +P + T N ++ A
Sbjct: 725 -EVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDIKSMKLNPTVSTMNALITA 783
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
E E+AM++ +M K+ + P+ T++ +L A+EK+ DD+++
Sbjct: 784 LCEGEQLEKAMEVLSDM------------KRAGLCPNTITYSILL--VASEKK-DDIDV 827
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/247 (20%), Positives = 109/247 (44%), Gaps = 22/247 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P + +N +++ C + GAF VLQ +++ G K Y ++ GK + ++E
Sbjct: 490 PTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKADCKLYTTLISTCAKSGKVDAMFEV 549
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F ++ + + PN Y L++ R G+ +A A M + + ++ L
Sbjct: 550 FHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVEPDRVVFNALITACGQ 609
Query: 174 AGKCEEALMQMDKICKVANKPLV---VSYTGLIQACLDSGNIQNAAYIFNQMKNF---CS 227
+G + A + ++ + +P+ ++ LI+AC ++G + A ++ + + +
Sbjct: 610 SGAVDRAFDVLAEM-RAETQPIDPDHITVGALIKACTNAGQVDRAREVYKMIDQYNIKGT 668
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P + T I V ++ + G +E A ++ +M +KG V+PD + ++D
Sbjct: 669 PEVYT--IAVSSHSQIGDWEFAYSVYTDMT-----------RKG-VVPDEMFLSALIDVA 714
Query: 288 AAEKRWD 294
+ D
Sbjct: 715 GHAGKLD 721
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 72/159 (45%), Gaps = 22/159 (13%)
Query: 134 NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANK 193
N L EG+ + + +EDME+ G++ +Y+ +C + ++A+ + + K+
Sbjct: 433 NRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHAKFFKIC---RSQKAVTEAFRFAKLIPT 489
Query: 194 PLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNL-VTCNI---MVKAYLEHGLFEEA 249
P + ++ L+ C S Q++A F ++ L C + ++ + G +
Sbjct: 490 PTLSTFNMLMSVCATS---QDSAGAFQVLQLVREAGLKADCKLYTTLISTCAKSGKVDAM 546
Query: 250 MKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
++F EM +N E V P+++T+ ++D C
Sbjct: 547 FEVFHEM------VNAE------VEPNVHTYGALIDGCG 573
>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
Length = 692
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/383 (20%), Positives = 161/383 (42%), Gaps = 39/383 (10%)
Query: 5 PDTVAYRSIAVTLGQA---GHIKELFDVIDSMRSLPK-KKFKT--------GTLERWDPR 52
PD V+Y ++ L A G ++EL + + M P F T G ER
Sbjct: 262 PDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEV 321
Query: 53 L--------EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L PDI +Y +++ + E A +L ++ G KP+ Y +++ + +
Sbjct: 322 LAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCS 381
Query: 105 CGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
++ E ++ P + + + +LV+ + G D + +E M G +
Sbjct: 382 AERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVIT 441
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y + C G +EA+M + + KP +SYT +++ + +A + +QM
Sbjct: 442 YTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMI 501
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ C N +T N ++ + GL E+A++L ++M + PD+ +++T
Sbjct: 502 QQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCS------------PDLISYST 549
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEITWEHL 338
++D + D+ + M++ G+ N + + SR G+ +++ + +
Sbjct: 550 VIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTT 609
Query: 339 ARADRITPPALIKERFCNRLENK 361
R+D + A+I C R E +
Sbjct: 610 IRSDAVLYNAVISS-LCKRGETE 631
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 125/282 (44%), Gaps = 22/282 (7%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPD+V YNAVL K+W +++++ + P+ T+ ++ + G + V+E
Sbjct: 261 EPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHE 320
Query: 114 FFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ V+ P+ Y +++ + +EG + A + M G+ + Y L + LC
Sbjct: 321 VLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLC 380
Query: 173 SAGK---CEEALMQM-DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
SA + EE L +M DK C + + V++ L+ +G + + QM ++ C
Sbjct: 381 SAERWEETEELLAEMFDKDCPLDD----VTFNILVDFFCQNGLVDRVIELLEQMLEHGCM 436
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P+++T ++ + + GL +EA+ L + M P+ ++ +L
Sbjct: 437 PDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCK------------PNTISYTIVLKGL 484
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ +RW D E + +M+ G N +I + G VE
Sbjct: 485 CSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVE 526
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 107/254 (42%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ + G I E ++ SM + K P+ + Y VL
Sbjct: 437 PDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCK---------------PNTISYTIVL 481
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
++W A ++ Q+ QQG + T+ ++ + G E ++ +
Sbjct: 482 KGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCS 541
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++Y +++ L + GKTDEA+ + M +G+ + +Y +A L G+ + +
Sbjct: 542 PDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQM 601
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMKNFCSPNLVTCNIMVKAYLE 242
D I + V Y +I + G + A ++ + + C PN T I+++
Sbjct: 602 FDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLAS 661
Query: 243 HGLFEEAMKLFQEM 256
G +EA ++ E+
Sbjct: 662 EGFVKEAQEMLTEL 675
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 88/226 (38%), Gaps = 52/226 (23%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY------------------ 165
PNA Y +V L G+ +A++ +++M RRG +Y+
Sbjct: 157 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 216
Query: 166 -----------DLARC------LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA-CL 207
D+ C +C G +EAL + + +P VVSY +++ C+
Sbjct: 217 LEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCM 276
Query: 208 DS--GNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
G +Q + ++ C PN+VT N ++ +GLFE ++ +M E
Sbjct: 277 AKRWGCVQE--LMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHG----- 329
Query: 266 EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
PDI + T++D E + + RM +GL N
Sbjct: 330 -------CTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPN 368
>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 126/249 (50%), Gaps = 15/249 (6%)
Query: 45 TLERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
T+E+ + R L P+ + +N+V++ + + A ++++ +G PS TY ++++
Sbjct: 299 TIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYG 358
Query: 104 ACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
++ ++ +++++ PN ++Y L+N L ++GK EA + DM RG++ +A
Sbjct: 359 RLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNAN 418
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+Y L C+ GK EAL D++ K +V+Y LI+ G ++ A +F +
Sbjct: 419 IYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLI 478
Query: 223 KNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
+ P+++T N ++ Y G ++ ++L++ M KK + P I TF+
Sbjct: 479 TSTGHCPDVITYNSLISGYSNAGNSQKCLELYETM------------KKLGLKPTINTFH 526
Query: 282 TMLDACAAE 290
++ C+ E
Sbjct: 527 PLISGCSKE 535
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/322 (18%), Positives = 146/322 (45%), Gaps = 31/322 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V + ++ +AG + DV +R KK+ ++EP I+ +N++L
Sbjct: 134 PNRVTFNTLIDGYCKAGEV----DVAIGLRERMKKE-----------KVEPSIITFNSLL 178
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK-YNLVYEFFRK-VQKSY 122
+ + ++ E A +L ++K G P TY ++ + +L + +R+ + K
Sbjct: 179 SGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGV 238
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+ +L+N L +EGK ++A ++ + G+V +Y + C G + A++
Sbjct: 239 KIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAIL 298
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMKNFCSPNLVTCNIMVKAYL 241
++++ +P +++ +I + I A ++ + +P++ T NI++ Y
Sbjct: 299 TIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYG 358
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+F ++ +EM E+ P++ ++ ++++ + + + E+V +
Sbjct: 359 RLCVFSRCFQILEEMEENGEK------------PNVISYGSLINCLCKDGKILEAEMVLR 406
Query: 302 RMLHHGLHFNAKRHLRMILDAS 323
M+ G+ NA + M++D S
Sbjct: 407 DMVGRGVLPNANIY-NMLIDGS 427
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 121/293 (41%), Gaps = 50/293 (17%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P + YN +++ R + F +L+++++ G+KP+ +YG ++ + GK
Sbjct: 343 IAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAE 402
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
R V + +PNA Y +L++ GK EA+ ++M + GI + Y L + L
Sbjct: 403 MVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGL 462
Query: 172 CSAGKCEEA-----------------------------------LMQMDKICKVANKPLV 196
C GK +EA L + + K+ KP +
Sbjct: 463 CKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTI 522
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
++ LI C G I+ +FN+M SP+ V N M+ Y E G ++A L +E
Sbjct: 523 NTFHPLISGCSKEG-IKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKE 581
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
M + V PD T+N+++ E + + + + M GL
Sbjct: 582 MVDMG------------VRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGL 622
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 115/262 (43%), Gaps = 12/262 (4%)
Query: 48 RWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK 107
R + RL P ++ + V K+++ + +++ G +P YG M + G
Sbjct: 23 RQEGRL-PSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAAVKLGD 81
Query: 108 YNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
L E F +++ +PN Y VL+ L +E + +A +M R +V + +
Sbjct: 82 LKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNT 141
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC 226
L C AG+ + A+ +++ K +P ++++ L+ + I+ A + N++K
Sbjct: 142 LIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIK--- 198
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
CN V + + + + + A + + RE KG+ I D YT + +L+
Sbjct: 199 ------CNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKI-DNYTCSILLNG 251
Query: 287 CAAEKRWDDLELVYKRMLHHGL 308
E + + E V K ++ HGL
Sbjct: 252 LCKEGKVEKAEEVLKSLVEHGL 273
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 87/207 (42%), Gaps = 9/207 (4%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE- 113
PD++ YN++++ + + + +K+ G KP+ T+ ++ C K + +
Sbjct: 485 PDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLIS---GCSKEGIKLKE 541
Query: 114 --FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F +Q + P+ + Y +++ G +A S ++M G+ Y L
Sbjct: 542 TLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGH 601
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF--NQMKNFCSPN 229
GK E +D + P +Y+ LIQ D + N AY++ ++N PN
Sbjct: 602 LKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDF-NGAYVWYREMLENGFLPN 660
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+ CN + + G +EA + EM
Sbjct: 661 VCICNELSTGLRKDGRLQEAQSICSEM 687
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 16/158 (10%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M+ PD V Y ++ + GH+++ F SL K E D + PD Y
Sbjct: 550 MNLSPDRVVYNAMIHCYQETGHVQKAF-------SLQK--------EMVDMGVRPDNKTY 594
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQ 119
N+++ ++ + ++ +K +G P A TY L+++ +N Y ++R+ ++
Sbjct: 595 NSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLE 654
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
++PN L L ++G+ EA S +M G+
Sbjct: 655 NGFLPNVCICNELSTGLRKDGRLQEAQSICSEMIANGM 692
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 79/196 (40%), Gaps = 20/196 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKK------------------KFKTGTL 46
PD + Y S+ AG+ ++ ++ ++M+ L K K K
Sbjct: 485 PDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEGIKLKETLF 544
Query: 47 -ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
E L PD VVYNA+++ + AF + +++ G +P TY ++ L
Sbjct: 545 NEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKE 604
Query: 106 GKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
GK + + ++ K IP A Y +L+ + A +M G + + +
Sbjct: 605 GKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCIC 664
Query: 165 YDLARCLCSAGKCEEA 180
+L+ L G+ +EA
Sbjct: 665 NELSTGLRKDGRLQEA 680
>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
Length = 793
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 109/263 (41%), Gaps = 15/263 (5%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
RL P+ +N +++ + A L +++ G P A TY ++ G
Sbjct: 204 RLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEA 263
Query: 112 YEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+++K +P Y LV+ R G +A VE M G Y LA
Sbjct: 264 RTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAG 323
Query: 171 LCSAGKCEEALMQMDKICKVA-NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSP 228
LC AGK +EA D++ ++ P VV+Y L+ AC +A + +M+
Sbjct: 324 LCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKS 383
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
+LVT NI+VK G EEA+ + M E+ + PD+ T+NT++DA
Sbjct: 384 SLVTHNIIVKGLCREGQLEEALGRLEMMTEEG------------LTPDVITYNTLIDASC 431
Query: 289 AEKRWDDLELVYKRMLHHGLHFN 311
++ M+ GL +
Sbjct: 432 KAGNVAKAFVLMDEMVRSGLKMD 454
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 142/314 (45%), Gaps = 50/314 (15%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGL--------------- 97
L PD V YN +LNA R+ A +L ++K++G P+ TY
Sbjct: 240 LSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQAT 299
Query: 98 -VMEVMLACG------KYNL----------VYEFFR---KVQKSYI--PNALAYKVLVNT 135
V+E M A G YN+ V E F+ ++++ I P+ + Y LV+
Sbjct: 300 DVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDA 359
Query: 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL 195
++ ++ +A++ +E+M +G+ S + + + LC G+ EEAL +++ + + P
Sbjct: 360 CFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPD 419
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
V++Y LI A +GN+ A + ++M ++ + T N ++ + +EEA +L
Sbjct: 420 VITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELL- 478
Query: 255 EMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKR 314
R ++G V PD ++ T++ A E + + ++ M+ L +
Sbjct: 479 ----------RAPPQRGFV-PDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSIST 527
Query: 315 HLRMILDASRAGKV 328
+ +I S GK+
Sbjct: 528 YNTLIKGLSTMGKL 541
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 133/303 (43%), Gaps = 33/303 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ +AG++ + F ++D M ++G L+ D N +L
Sbjct: 418 PDVITYNTLIDASCKAGNVAKAFVLMDEM-------VRSG--------LKMDTFTLNTLL 462
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ K++E A +L+ Q+G P +YG VM K + + +++
Sbjct: 463 YNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLT 522
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y L+ L GK EA+ + ++ G+V Y + C G E+A
Sbjct: 523 PSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQF 582
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLE 242
+K+ + + KP VV+ L+ G ++ A +F ++ +++T N +++A +
Sbjct: 583 HNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCK 642
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ A++ F +M + +GL PD++T+N +L A + R + ++
Sbjct: 643 DNDVDTALRFFADM-----------EVRGLQ-PDVFTYNVLLSALSEAGR----SVEAQK 686
Query: 303 MLH 305
MLH
Sbjct: 687 MLH 689
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 102/232 (43%), Gaps = 16/232 (6%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + +LV+T +G +A+S + M+ G+ A Y L C G EA
Sbjct: 207 PNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTL 266
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLE 242
+ ++ K P +Y L+ A G I+ A + M F P+L T N++ +
Sbjct: 267 LARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQ 326
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +EA KL EM ++ G+V PD+ T+NT++DAC +R D + +
Sbjct: 327 AGKVDEAFKLKDEM-----------EQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEE 375
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE----LLEITWEHLARADRITPPALI 350
M G+ + H ++ R G++E LE+ E D IT LI
Sbjct: 376 MREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLI 427
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 70/184 (38%), Gaps = 16/184 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y ++ L G + E D ++ + + L PD YN ++
Sbjct: 523 PSISTYNTLIKGLSTMGKLTEAIDKLNELMEM---------------GLVPDDTTYNIII 567
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+A + E AF ++ + KP T +M + G+ + F V+K
Sbjct: 568 HAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKK 627
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y L+ L ++ D A+ DME RG+ Y L L AG+ EA
Sbjct: 628 VDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKM 687
Query: 184 MDKI 187
+ K+
Sbjct: 688 LHKL 691
>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
Length = 563
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 136/315 (43%), Gaps = 28/315 (8%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
LE P P++V Y A ++ +R+ + AF VL+++ +G KP+ T+ +++ +
Sbjct: 135 LETGTP---PNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKI 191
Query: 106 GKYNLVYEFFRKVQKS--YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + F K+ KS Y PN Y V++ REGK A + M +G+ +
Sbjct: 192 GWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNT 251
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L C G + A M+K+ + P + +Y +I G IQ A + ++
Sbjct: 252 YTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEA---YKVLR 308
Query: 224 NFCSPNL----VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
S L +T I++ + + G A+ LF M E+ PDI
Sbjct: 309 MATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENG------------CCPDIEA 356
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
+ +++ +++ ++ + + + L GL + + MI + G+ L +E +
Sbjct: 357 YTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMV 416
Query: 340 R----ADRITPPALI 350
+ AD IT ALI
Sbjct: 417 QNGCFADSITYGALI 431
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/341 (21%), Positives = 144/341 (42%), Gaps = 35/341 (10%)
Query: 11 RSIAVTLGQAGHIKELFDVIDSMRS--LP----------KKKFKTGTL----ERWDPRLE 54
R + G+AG + E D++ MRS LP + +TG+ + +D
Sbjct: 7 RGMVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTR 66
Query: 55 PDIVVYN----AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL 110
+ N A++ C R + E +L + + G T +V+ + G++
Sbjct: 67 AGVSPMNRGFGALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKD 126
Query: 111 VYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
V EFFR++ ++ PN + Y ++ L + +A +E+M RG+ + + L
Sbjct: 127 VSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLID 186
Query: 170 CLCSAGKCEEALMQMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
LC G E A K+ K ++ KP V +YT +I G + A + +M +
Sbjct: 187 GLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLK 246
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
PN T ++ + + G F+ A +L +M ++ +P+IYT+N ++D
Sbjct: 247 PNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEG------------FLPNIYTYNAVIDGF 294
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+ + + V + GL F+ + +I + + G +
Sbjct: 295 CKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHI 335
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/327 (20%), Positives = 130/327 (39%), Gaps = 35/327 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTLER------WDPR---- 52
P+ V Y + L + ++K+ F V++ M R L + TL W R
Sbjct: 141 PNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRL 200
Query: 53 ---------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
+P++ Y ++ R + A +L ++ +QG KP+ TY ++
Sbjct: 201 FLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHC 260
Query: 104 ACGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G ++ +E K+ Q+ ++PN Y +++ ++GK EA + +G+
Sbjct: 261 KGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKI 320
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ- 221
Y L C G AL D++ + P + +YT LI ++ + F++
Sbjct: 321 TYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKC 380
Query: 222 MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
+ P T M+ Y + G A+++F+ M ++ D T+
Sbjct: 381 LMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNG------------CFADSITYG 428
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGL 308
++ E R ++ + +Y+ ML L
Sbjct: 429 ALISGLCKESRLEEAKALYEGMLDKRL 455
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 106/258 (41%), Gaps = 14/258 (5%)
Query: 74 EGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVL 132
E A VL+ ++ G T V+ V L G + + F + ++ + P + L
Sbjct: 21 EAADMVLE-MRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVSPMNRGFGAL 79
Query: 133 VNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVAN 192
V REGK +E + + M R G A + R LC G+ ++ ++ +
Sbjct: 80 VVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGT 139
Query: 193 KPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMK 251
P VV+YT I ++ A ++ +M PN+ T ++ + G E A +
Sbjct: 140 PPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFR 199
Query: 252 LFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
LF ++ + S++ P+++T+ M+ E + E++ RM+ GL N
Sbjct: 200 LFLKLIKSSSY-----------KPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPN 248
Query: 312 AKRHLRMILDASRAGKVE 329
+ +I + G +
Sbjct: 249 TNTYTTLIGGHCKGGSFD 266
>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
Length = 1091
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 138/316 (43%), Gaps = 29/316 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y I +G++ ++E+ V M +K + E V YN ++
Sbjct: 799 PDEFTYNLILDAMGKSMRVEEMLKVQKEMH---RKGY------------ESTYVTYNTII 843
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ V+ K+ E A + L +G P+ TYG +++ +L GK F + ++
Sbjct: 844 SGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCE 903
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y +L+N G T+ E M +GI Y L LC+AG+ + L
Sbjct: 904 PNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCY 963
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ ++ +P ++ Y LI S I+ A +FN+M K PNL T N ++ +
Sbjct: 964 FRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSLILHLGK 1023
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G EA ++++E+ +KG P ++T+N ++ + D+ Y +
Sbjct: 1024 AGKAAEAAQMYEELL-----------RKGWK-PSVFTYNALIRGYSVSGSTDNAYAAYGQ 1071
Query: 303 MLHHGLHFNAKRHLRM 318
M+ G N+ ++++
Sbjct: 1072 MIVGGCQPNSSTYMQL 1087
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 125/289 (43%), Gaps = 15/289 (5%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
YN ++ V+ A V + + + G PS TY ++M + V +++
Sbjct: 174 YNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEME 233
Query: 120 KSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ PN +Y + + L + + DEA + ME G + + + LC AG+
Sbjct: 234 ARGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLS 293
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMV 237
+A K+ KP V+Y L+ C DSG+ Q+ ++N M + + N+V+ +V
Sbjct: 294 DAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVV 353
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
A + G +EA+ +F EM E KG+ P+ Y++N+++ +D
Sbjct: 354 DALCQVGRVDEALAVFDEMKE-----------KGMS-PEQYSYNSLISGFLKADMFDRAL 401
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
++ M G N H+ I ++G+ +EH+ ++ I P
Sbjct: 402 ELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHM-KSKGIVP 449
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/323 (19%), Positives = 134/323 (41%), Gaps = 29/323 (8%)
Query: 36 LPKKKFKTGTLERWDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPS 91
L K F +E + +E P + Y+ ++ A +++ + W+L +++ +G KP+
Sbjct: 181 LVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPN 240
Query: 92 ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVE 150
+Y + + V+ +++ Y K++ S P+ + + V++ L G+ +A +
Sbjct: 241 VYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFW 300
Query: 151 DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG 210
M+ Y L +G + + + + +VSYT ++ A G
Sbjct: 301 KMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVG 360
Query: 211 NIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM------------- 256
+ A +F++MK SP + N ++ +L+ +F+ A++LF M
Sbjct: 361 RVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHV 420
Query: 257 ---------AEDSNHINR-EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306
+ I R E+ K ++PD+ N +L + A R + V+ +
Sbjct: 421 LFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAM 480
Query: 307 GLHFNAKRHLRMILDASRAGKVE 329
G+ + + MI S+A K +
Sbjct: 481 GVSPDTITYTMMIKCCSKASKAD 503
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 110/255 (43%), Gaps = 22/255 (8%)
Query: 5 PDTVAYRSIAVTL---GQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
PD A ++ +L G+ G K +F + +M + PD + Y
Sbjct: 449 PDVAAANAVLYSLAGSGRLGMAKRVFYELKAMG------------------VSPDTITYT 490
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
++ C + + + A + + G P +++ + GK N ++ F K+++
Sbjct: 491 MMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHKLKEM 550
Query: 122 YI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
I P Y L++ L REGK E + +E+M R + Y + CL G+ A
Sbjct: 551 KIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLSKNGEVNCA 610
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240
+ + + + P + SY ++ + ++ A +F QMK +P+ T ++ ++
Sbjct: 611 IDMLYSMTEKGCAPDLSSYNTVMYGLIKEERLEEAFRMFCQMKKILAPDYATLCTILPSF 670
Query: 241 LEHGLFEEAMKLFQE 255
+++GL +EA+ +E
Sbjct: 671 VKNGLMKEALHTVKE 685
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/301 (20%), Positives = 127/301 (42%), Gaps = 29/301 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ G +G + + +V ++M + +IV Y AV+
Sbjct: 309 PDRVTYITLLDKCGDSGDSQSVVEVWNAMVA---------------DGYNDNIVSYTAVV 353
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+A + + + A V ++K++G P +Y ++ L ++ E F +
Sbjct: 354 DALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPS 413
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + +N + G++ +A+ E M+ +GIV A + L +G+ A
Sbjct: 414 PNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRV 473
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + P ++YT +I+ C + A F+ M ++ C P+++ N ++ +
Sbjct: 474 FYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYK 533
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G EA +LF ++ E + P T+NT+L E + ++ + +
Sbjct: 534 GGKGNEAWQLFHKLKEMK------------IEPTNGTYNTLLSGLGREGKVKEVMQLLEE 581
Query: 303 M 303
M
Sbjct: 582 M 582
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 75/383 (19%), Positives = 145/383 (37%), Gaps = 66/383 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ +Y LGQA E + ++ M D +PD+V + ++
Sbjct: 239 PNVYSYTICIRVLGQAARFDEAYHILGKME---------------DSGCKPDVVTHTVII 283
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ A V ++K QKP TY +++ G V E + V Y
Sbjct: 284 QVLCDAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYN 343
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA--------- 174
N ++Y +V+ L + G+ DEA++ ++M+ +G+ Y L A
Sbjct: 344 DNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALEL 403
Query: 175 -----------------------GKCEEALMQMDKICKVANK---PLVVSYTGLIQACLD 208
GK ++L + + + +K P V + ++ +
Sbjct: 404 FNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAG 463
Query: 209 SGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
SG + A +F ++K SP+ +T +M+K + +EAM F +M E
Sbjct: 464 SGRLGMAKRVFYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESG------- 516
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
+PD+ N+++D + ++ ++ ++ + + ++ R GK
Sbjct: 517 -----CVPDVLALNSLIDTLYKGGKGNEAWQLFHKLKEMKIEPTNGTYNTLLSGLGREGK 571
Query: 328 VELLEITWEHLARADRITPPALI 350
V+ + E + R I PP LI
Sbjct: 572 VKEVMQLLEEMTRT--IYPPNLI 592
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 81/356 (22%), Positives = 145/356 (40%), Gaps = 52/356 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y ++ L + G + D++ SM + PD+ YN V+
Sbjct: 589 PNLITYNTVLDCLSKNGEVNCAIDMLYSMT---------------EKGCAPDLSSYNTVM 633
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
++ ++ E AF + Q+K K A Y + ++ + K L+ E V K YI
Sbjct: 634 YGLIKEERLEEAFRMFCQMK----KILAPDYATLCTILPSFVKNGLMKEALHTV-KEYIL 688
Query: 125 NA------LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
A ++ L+ + ++ ++++ E++ RGI+ + L R LC K
Sbjct: 689 KAGCNVDKSSFHSLMEGILKKAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKAL 748
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
EA +K + SY LI+ +D I A +F +MK C P+ T N+++
Sbjct: 749 EAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLIL 808
Query: 238 KAYLEHGLFEEAMKLFQEM---AEDSNHINREYDKKGLVIP-------DIY--------- 278
A + EE +K+ +EM +S ++ GLV D+Y
Sbjct: 809 DAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFS 868
Query: 279 ----TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASR-AGKVE 329
T+ +LD + D E ++ ML +G N + ++L+ R AG E
Sbjct: 869 PTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIY-NILLNGHRIAGNTE 923
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 104/242 (42%), Gaps = 16/242 (6%)
Query: 67 CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPN 125
C +K E A + + K G +Y ++ ++ ++ + F ++++ P+
Sbjct: 742 CKHKKALE-AHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPD 800
Query: 126 ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMD 185
Y ++++ + + + +E + ++M R+G + Y + L + + E+A+
Sbjct: 801 EFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYY 860
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHG 244
+ P +Y L+ L SG + +A +FN+M + C PN NI++ + G
Sbjct: 861 NLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAG 920
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
E +LF++M E + PDI ++ ++D R +D L Y R L
Sbjct: 921 NTENVCQLFEKMVEQG------------INPDIKSYTILIDTLCTAGRLND-GLCYFRQL 967
Query: 305 HH 306
H
Sbjct: 968 HE 969
>gi|449504220|ref|XP_004162287.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic-like [Cucumis sativus]
Length = 566
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 109/230 (47%), Gaps = 14/230 (6%)
Query: 76 AFWVLQQLKQQGQKPSA-TTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVN 134
AF+ L+ + ++GQKP L+ ++ C + + IP+A +Y LV+
Sbjct: 81 AFFHLEFMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGSGIIPDAASYTFLVS 140
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194
+L R+G A+ V+ ME G + A Y L R LC G ++L +D++ + P
Sbjct: 141 SLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVP 200
Query: 195 LVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253
+Y+ L++A A+ + ++ + PNLV+ N+++ + G E+AM+LF
Sbjct: 201 NAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVLLTGLCKEGRTEDAMQLF 260
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
RE KG P++ ++N +L + E RW++ ++ M
Sbjct: 261 -----------RELPSKGFS-PNVVSYNILLRSLCNEGRWEEANVLLAEM 298
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 124/287 (43%), Gaps = 23/287 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM----------------RSLPKKKFKTGTLER 48
PD +Y + +L + G++ ++D M R L T +L+
Sbjct: 130 PDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNLTQSLQL 189
Query: 49 WDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
D ++ P+ Y+ +L A + + + A +L ++ +G KP+ +Y +++ +
Sbjct: 190 LDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVLLTGLCK 249
Query: 105 CGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ + FR++ K + PN ++Y +L+ +L EG+ +EA + +M+ S
Sbjct: 250 EGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGDERSPSTVT 309
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L L G+ E AL ++++ + KP SY +I + +QM
Sbjct: 310 YNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCKDRKVDLVVKCLDQMM 369
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
C+PN T N + E G+ +EA + Q + + +E+ K
Sbjct: 370 YRHCNPNEGTYN-AIATLCEEGMVQEAFSIIQSLGNKQHFSTQEFYK 415
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 97/244 (39%), Gaps = 30/244 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLE------------RW--- 49
P+ V+Y + L + G + D + R LP K F + RW
Sbjct: 235 PNLVSYNVLLTGLCKEGRTE---DAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEA 291
Query: 50 ---------DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
D R P V YN ++ + + E A VL+++ + KP+A++Y ++
Sbjct: 292 NVLLAEMDGDER-SPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIA 350
Query: 101 VMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+ K +LV + ++ + PN Y + TL EG EA S ++ + +
Sbjct: 351 RLCKDRKVDLVVKCLDQMMYRHCNPNEGTYNAIA-TLCEEGMVQEAFSIIQSLGNKQHFS 409
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219
+ Y + LC G A + ++ K P +Y+ LI+ G + A IF
Sbjct: 410 TQEFYKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIF 469
Query: 220 NQMK 223
+ M+
Sbjct: 470 SVME 473
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 30/207 (14%)
Query: 137 WREGKTDE---------AVSAVEDMERRG----IVGSAALYYDLARCLCSAGKCEEALMQ 183
W+ GK D+ A +E M +G + + L YDL C K +A+
Sbjct: 64 WKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDL----CKTCKMRKAIKV 119
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NLVTCNIMVKAYLE 242
M+ + P SYT L+ + GN+ A + ++M+ + P N T N +V+
Sbjct: 120 MEMMIGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCM 179
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
HG ++++L + + KGLV P+ YT++ +L+A E+ D+ +
Sbjct: 180 HGNLTQSLQLLDRLIQ-----------KGLV-PNAYTYSFLLEAAYKERGADEASKLLDE 227
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
++ G N + ++ + G+ E
Sbjct: 228 IIAKGGKPNLVSYNVLLTGLCKEGRTE 254
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 16/160 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y +IA TL + G ++E F +I S+ + K+ F T Y V+
Sbjct: 375 PNEGTYNAIA-TLCEEGMVQEAFSIIQSLGN--KQHFSTQEF-------------YKIVI 418
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ R+ AF +L ++ + G P + TY ++ + G N E F ++++
Sbjct: 419 TSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEENIKL 478
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
+ Y L+ + +TD A+ E M +G + + Y
Sbjct: 479 DTENYNSLILGCCKSRRTDLALDVFEIMVGKGYLANETTY 518
>gi|293336971|ref|NP_001167873.1| uncharacterized protein LOC100381578 [Zea mays]
gi|223944573|gb|ACN26370.1| unknown [Zea mays]
gi|414585240|tpg|DAA35811.1| TPA: hypothetical protein ZEAMMB73_503732 [Zea mays]
Length = 640
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 122/261 (46%), Gaps = 17/261 (6%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNL 110
R+ PD+V YN ++ R + + A L +++ + P TY +M+ + +
Sbjct: 235 RVRPDVVSYNILIKGYCRAGRTQDAMARLADMREHAELAPDKVTYLTLMQRHYSEATFPQ 294
Query: 111 VYEFFRKVQKSYIPNAL---AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
F+++++ + + AY +++ L ++GK EA++ E M +RG +AA+Y L
Sbjct: 295 CIALFQEMEERGMGKEIPQHAYVLVIGALSKDGKPFEALAVFERMSKRGCPANAAMYTAL 354
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFC 226
+ G+ +EA+ +++ + V+Y ++ GN++ A F ++
Sbjct: 355 IDSMGKFGREKEAMALFERMKATGIELDAVTYGVVVNCLCRFGNLEEALACFRSCVEKGV 414
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+ N + ++ + + G+ ++A +LF+EM KG V PD Y +N ++DA
Sbjct: 415 AVNAIFYTSLIDGFGKTGMVDQAKELFEEMV-----------AKGFV-PDSYCYNVLIDA 462
Query: 287 CAAEKRWDDLELVYKRMLHHG 307
R DD YKRM G
Sbjct: 463 LVKAGRTDDACAFYKRMEDDG 483
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 96/237 (40%), Gaps = 2/237 (0%)
Query: 29 VIDSMRSLPKKKFKTGTLERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG 87
+IDSM ++K ER +E D V Y V+N R E A + ++G
Sbjct: 354 LIDSMGKFGREKEAMALFERMKATGIELDAVTYGVVVNCLCRFGNLEEALACFRSCVEKG 413
Query: 88 QKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAV 146
+A Y +++ G + E F + V K ++P++ Y VL++ L + G+TD+A
Sbjct: 414 VAVNAIFYTSLIDGFGKTGMVDQAKELFEEMVAKGFVPDSYCYNVLIDALVKAGRTDDAC 473
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
+ + ME G + Y L L K EEAL D + P ++ L
Sbjct: 474 AFYKRMEDDGCDQTVYTYTILIDGLFKEHKNEEALKFWDSMIDKGITPTAAAFRALSNGL 533
Query: 207 LDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
SG A I +++ M+ + G F++A KL + + I
Sbjct: 534 CLSGKFSRAWRILDELAPMGVIPETAHEDMINVLCKTGRFKQACKLADGIVQKGREI 590
>gi|449453792|ref|XP_004144640.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic-like [Cucumis sativus]
Length = 566
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 109/230 (47%), Gaps = 14/230 (6%)
Query: 76 AFWVLQQLKQQGQKPSA-TTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVN 134
AF+ L+ + ++GQKP L+ ++ C + + IP+A +Y LV+
Sbjct: 81 AFFHLEFMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGSGIIPDAASYTFLVS 140
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194
+L R+G A+ V+ ME G + A Y L R LC G ++L +D++ + P
Sbjct: 141 SLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVP 200
Query: 195 LVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253
+Y+ L++A A+ + ++ + PNLV+ N+++ + G E+AM+LF
Sbjct: 201 NAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVLLTGLCKEGRTEDAMQLF 260
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
RE KG P++ ++N +L + E RW++ ++ M
Sbjct: 261 -----------RELPSKGFS-PNVVSYNILLRSLCNEGRWEEANVLLAEM 298
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 124/287 (43%), Gaps = 23/287 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM----------------RSLPKKKFKTGTLER 48
PD +Y + +L + G++ ++D M R L T +L+
Sbjct: 130 PDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNLTQSLQL 189
Query: 49 WDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
D ++ P+ Y+ +L A + + + A +L ++ +G KP+ +Y +++ +
Sbjct: 190 LDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVLLTGLCK 249
Query: 105 CGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+ + FR++ K + PN ++Y +L+ +L EG+ +EA + +M+ S
Sbjct: 250 EGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGDERSPSTVT 309
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L L G+ E AL ++++ + KP SY +I + +QM
Sbjct: 310 YNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCKDRKVDLVVKCLDQMM 369
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
C+PN T N + E G+ +EA + Q + + +E+ K
Sbjct: 370 YRHCNPNEGTYN-AIATLCEEGMVQEAFSIIQSLGNKQHFSTQEFYK 415
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 97/244 (39%), Gaps = 30/244 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLE------------RW--- 49
P+ V+Y + L + G + D + R LP K F + RW
Sbjct: 235 PNLVSYNVLLTGLCKEGRTE---DAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEA 291
Query: 50 ---------DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
D R P V YN ++ + + E A VL+++ + KP+A++Y ++
Sbjct: 292 NVLLAEMDGDER-SPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIA 350
Query: 101 VMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+ K +LV + ++ + PN Y + TL EG EA S ++ + +
Sbjct: 351 RLCKDRKVDLVVKCLDQMMYRHCNPNEGTYNAIA-TLCEEGMVQEAFSIIQSLGNKQHFS 409
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219
+ Y + LC G A + ++ K P +Y+ LI+ G + A IF
Sbjct: 410 TQEFYKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIF 469
Query: 220 NQMK 223
+ M+
Sbjct: 470 SVME 473
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 30/207 (14%)
Query: 137 WREGKTDE---------AVSAVEDMERRG----IVGSAALYYDLARCLCSAGKCEEALMQ 183
W+ GK D+ A +E M +G + + L YDL C K +A+
Sbjct: 64 WKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDL----CKTCKMRKAIKV 119
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NLVTCNIMVKAYLE 242
M+ + P SYT L+ + GN+ A + ++M+ + P N T N +V+
Sbjct: 120 MEMMIGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCM 179
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
HG ++++L + + KGLV P+ YT++ +L+A E+ D+ +
Sbjct: 180 HGNLTQSLQLLDRLIQ-----------KGLV-PNAYTYSFLLEAAYKERGADEASKLLDE 227
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
++ G N + ++ + G+ E
Sbjct: 228 IIAKGGKPNLVSYNVLLTGLCKEGRTE 254
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 16/160 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y +IA TL + G ++E F +I S+ + K+ F T Y V+
Sbjct: 375 PNEGTYNAIA-TLCEEGMVQEAFSIIQSLGN--KQHFSTQEF-------------YKIVI 418
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ R+ AF +L ++ + G P + TY ++ + G N E F ++++
Sbjct: 419 TSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEENIKL 478
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
+ Y L+ + +TD A+ E M +G + + Y
Sbjct: 479 DTENYNSLILGCCKSRRTDLALDVFEIMVGKGYLANETTY 518
>gi|302818393|ref|XP_002990870.1| hypothetical protein SELMODRAFT_132504 [Selaginella moellendorffii]
gi|300141431|gb|EFJ08143.1| hypothetical protein SELMODRAFT_132504 [Selaginella moellendorffii]
Length = 554
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 95/179 (53%), Gaps = 2/179 (1%)
Query: 46 LERWDPRLEPDI-VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+E P L + +V+++++ RR + E A+ + Q++ ++G P+ +Y L+++
Sbjct: 349 VEHGKPTLSRQMAMVHSSLVTKLCRRGRLEDAYELHQKMVERGLSPTIKSYKLLIKYHFK 408
Query: 105 CGKYNLVYEFFRKVQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK + + F ++QK P Y+VL+ + G DEA A+E+ R + A
Sbjct: 409 AGKAGISRQLFEQMQKVDSPQTQDTYRVLLEGYCQAGMLDEAYGALEETVARQFKPTGAS 468
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y +L R LC G+ EEA + ++ + ++PL++SY + QA +SG NA +F ++
Sbjct: 469 YLELIRKLCELGRTEEAHHILQRMVSLGHRPLLLSYNAVFQAYYESGRFANAREVFQEI 527
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 91/171 (53%), Gaps = 7/171 (4%)
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVS 147
+P++ TYG ++ + G+ E F++ +++ Y P+ + Y +++ L + + D+A S
Sbjct: 7 QPNSHTYGALVSGLCKAGRIAEACELFQQMIERRYTPHVVLYTTVIDGLCKARQFDKACS 66
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVAN-KPLVVSYTGLIQAC 206
+E ME IV +A LC+ GK + A + +I + N +P VV YT I+
Sbjct: 67 YLEKMESPDIVTYSAFIDG----LCNVGKVDYAFELLKQIQERGNARPDVVLYTIFIKGL 122
Query: 207 LDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+G + NA +F +M++ C PN VT N +++A H + A +LF EM
Sbjct: 123 CKAGQVDNAVELFYKMEDIGCPPNAVTYNSLMRALAWHKSVDAARRLFTEM 173
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 6/209 (2%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA--C--GKYN 109
E +I+ Y ++ VR + A Q++ + G+ + +V ++ C G+
Sbjct: 319 EINILTYYEIIRGLVRLGKVSKALAQFQKMVEHGKPTLSRQMAMVHSSLVTKLCRRGRLE 378
Query: 110 LVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
YE +K V++ P +YK+L+ ++ GK + E M++ + Y L
Sbjct: 379 DAYELHQKMVERGLSPTIKSYKLLIKYHFKAGKAGISRQLFEQMQKVDSPQTQDTYRVLL 438
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-S 227
C AG +EA +++ KP SY LI+ + G + A +I +M +
Sbjct: 439 EGYCQAGMLDEAYGALEETVARQFKPTGASYLELIRKLCELGRTEEAHHILQRMVSLGHR 498
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
P L++ N + +AY E G F A ++FQE+
Sbjct: 499 PLLLSYNAVFQAYYESGRFANAREVFQEI 527
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 109/295 (36%), Gaps = 56/295 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y L +AG + ++ M D P+ V YN+++
Sbjct: 110 PDVVLYTIFIKGLCKAGQVDNAVELFYKME---------------DIGCPPNAVTYNSLM 154
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA-----------------CG- 106
A K + A + ++ ++G +P TY L+ EV L CG
Sbjct: 155 RALAWHKSVDAARRLFTEMIRKGCEPDGATYVLISEVFLKSKSLEDARKFEEDVRNECGS 214
Query: 107 ------------------KYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSA 148
K Y + + K P Y LV R+ + E
Sbjct: 215 LKGLAAYVSQINKLCRERKLEEAYRILQTIAKDMQPTVGMYATLVRAFLRDERAMEVDEL 274
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
V+DM RRG + L+ L R L ++GK + +L ++ + + +++Y +I+ +
Sbjct: 275 VKDMVRRGCSINHHLWDTLVRMLFTSGKLKISLTVAEQALERGCEINILTYYEIIRGLVR 334
Query: 209 SGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL-----EHGLFEEAMKLFQEMAE 258
G + A F +M P L MV + L G E+A +L Q+M E
Sbjct: 335 LGKVSKALAQFQKMVEHGKPTLSRQMAMVHSSLVTKLCRRGRLEDAYELHQKMVE 389
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 24/189 (12%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN+ Y LV+ L + G+ EA + M R LY + LC A Q
Sbjct: 8 PNSHTYGALVSGLCKAGRIAEACELFQQMIERRYTPHVVLYTTVIDGLCKA-------RQ 60
Query: 184 MDKICKVANK---PLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVK 238
DK C K P +V+Y+ I + G + A + Q+ + P++V I +K
Sbjct: 61 FDKACSYLEKMESPDIVTYSAFIDGLCNVGKVDYAFELLKQIQERGNARPDVVLYTIFIK 120
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G + A++LF +M ED P+ T+N+++ A A K D
Sbjct: 121 GLCKAGQVDNAVELFYKM-EDIG-----------CPPNAVTYNSLMRALAWHKSVDAARR 168
Query: 299 VYKRMLHHG 307
++ M+ G
Sbjct: 169 LFTEMIRKG 177
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/369 (20%), Positives = 144/369 (39%), Gaps = 47/369 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + L G + F+++ ++ ER + R PD+V+Y +
Sbjct: 74 PDIVTYSAFIDGLCNVGKVDYAFELLKQIQ------------ERGNAR--PDVVLYTIFI 119
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ Q + A + +++ G P+A TY +M + + F + ++K
Sbjct: 120 KGLCKAGQVDNAVELFYKMEDIGCPPNAVTYNSLMRALAWHKSVDAARRLFTEMIRKGCE 179
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERR--GIVGSAALYYDLARCLCSAGKCEEAL 181
P+ Y VL++ ++ + K+ E E+ R G + A Y LC K EEA
Sbjct: 180 PDGATY-VLISEVFLKSKSLEDARKFEEDVRNECGSLKGLAAYVSQINKLCRERKLEEAY 238
Query: 182 MQMDKICKVANKPLVVSYTGLIQACL-DSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240
+ I K +P V Y L++A L D ++ + + ++ CS N + +V+
Sbjct: 239 RILQTIAK-DMQPTVGMYATLVRAFLRDERAMEVDELVKDMVRRGCSINHHLWDTLVRML 297
Query: 241 LEHGLFEEAMKLFQEMAEDSNHIN--------REYDKKGLVIPDIYTFNTMLD------- 285
G + ++ + ++ E IN R + G V + F M++
Sbjct: 298 FTSGKLKISLTVAEQALERGCEINILTYYEIIRGLVRLGKVSKALAQFQKMVEHGKPTLS 357
Query: 286 ------------ACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEI 333
R +D ++++M+ GL K + +I +AGK +
Sbjct: 358 RQMAMVHSSLVTKLCRRGRLEDAYELHQKMVERGLSPTIKSYKLLIKYHFKAGKAGISRQ 417
Query: 334 TWEHLARAD 342
+E + + D
Sbjct: 418 LFEQMQKVD 426
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 94/209 (44%), Gaps = 6/209 (2%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P + +Y ++ A +R ++ +++ + ++G + + ++ ++ GK +
Sbjct: 248 MQPTVGMYATLVRAFLRDERAMEVDELVKDMVRRGCSINHHLWDTLVRMLFTSGKLKISL 307
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG----IVGSAALYYDL 167
+ +++ N L Y ++ L R GK +A++ + M G A ++ L
Sbjct: 308 TVAEQALERGCEINILTYYEIIRGLVRLGKVSKALAQFQKMVEHGKPTLSRQMAMVHSSL 367
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227
LC G+ E+A K+ + P + SY LI+ +G + +F QM+ S
Sbjct: 368 VTKLCRRGRLEDAYELHQKMVERGLSPTIKSYKLLIKYHFKAGKAGISRQLFEQMQKVDS 427
Query: 228 PNLV-TCNIMVKAYLEHGLFEEAMKLFQE 255
P T ++++ Y + G+ +EA +E
Sbjct: 428 PQTQDTYRVLLEGYCQAGMLDEAYGALEE 456
>gi|225427504|ref|XP_002263624.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
mitochondrial-like [Vitis vinifera]
Length = 709
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/300 (20%), Positives = 133/300 (44%), Gaps = 17/300 (5%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
R +++PD YN + R + VL+++ + G P + TY ++
Sbjct: 398 FRRVKNKVKPDANTYNILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKA 457
Query: 106 G---KYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
G + ++EF R K P A Y +++ L + +T+E ++DM G++
Sbjct: 458 GMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDV 517
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
+ Y + +C AGK EEA ++++ +P +V+Y + ++ + A ++ +
Sbjct: 518 STYKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGR 577
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
M + C P++ T N+++ + E G + A + + EM D R+ D ++I ++
Sbjct: 578 MIEAGCVPSVHTFNMLISMFFEIGEPDGAFETWHEM--DKRGCARDTDTYCVMIEGLFNC 635
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
N M DAC + +++ G+ ++ ++ S G ++ + EH+ +
Sbjct: 636 NKMEDAC----------FLLDEVVNKGIKLPYRKFDCFLMQLSMIGDLQAIHKLSEHMRK 685
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 95/225 (42%), Gaps = 13/225 (5%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M PD+ Y + + +AG + E ++ + MR+ K T+ P Y
Sbjct: 438 MGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRT------KGSTMS------SPTAKTY 485
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-Q 119
++ A V+ + E F +++ + G P +TY V+E M GK Y+F ++
Sbjct: 486 AIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGN 545
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K Y P+ + Y ++ L K++EA+ M G V S + L G+ +
Sbjct: 546 KGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDG 605
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
A ++ K +Y +I+ + +++A ++ +++ N
Sbjct: 606 AFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVVN 650
>gi|356495305|ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
mitochondrial-like [Glycine max]
Length = 618
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 107/230 (46%), Gaps = 17/230 (7%)
Query: 67 CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNA 126
C+ + EG F +LQ +K +G P+ Y ++ + GK +++ PN
Sbjct: 186 CLTNRIGEG-FKLLQLIKSRGVAPNTVVYNTLLHALCRNGKVGRARNLMNEMED---PND 241
Query: 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK 186
+ + +L++ +EG + +A+ +E G V + LC+AG+ EA +++
Sbjct: 242 VTFNILISGYCKEGNSVQALVLLEKSFSMGFVPDVVSVTKVLEILCNAGRTMEAAEVLER 301
Query: 187 ICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGL 245
+ + VV+Y LI+ +G ++ + QM+N C PN+ T N+++ + E G+
Sbjct: 302 VESMGGLLDVVAYNTLIKGFCGAGKVKVGLHFLKQMENKGCLPNVDTYNVLISGFSESGM 361
Query: 246 FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
+ A+ LF +M D N TF+T++ +E+R +D
Sbjct: 362 LDLALDLFNDMKTDGIKWN------------FVTFDTLIRGLCSEERIED 399
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/345 (20%), Positives = 130/345 (37%), Gaps = 64/345 (18%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M PD V+ + L AG E +V++ + S+ G L D+V Y
Sbjct: 270 MGFVPDVVSVTKVLEILCNAGRTMEAAEVLERVESM------GGLL---------DVVAY 314
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N ++ + + L+Q++ +G P+ TY +++ G +L + F ++
Sbjct: 315 NTLIKGFCGAGKVKVGLHFLKQMENKGCLPNVDTYNVLISGFSESGMLDLALDLFNDMKT 374
Query: 121 SYIP-NALAYKVLVNTLWREGKTDEAVSAVEDME--RRGIVGSAALYYDLARCL------ 171
I N + + L+ L E + ++ S +E ME + G G + Y + L
Sbjct: 375 DGIKWNFVTFDTLIRGLCSEERIEDGFSILELMEESKEGSRGHISPYNSIIYGLLKKNGF 434
Query: 172 ---------------------------CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204
C G E+A D++ P ++ Y L+
Sbjct: 435 DESAEFLTKMGNLFPRAVDRSLMILEHCKKGAIEDAKRVYDQMIDEGGIPSILVYNCLVH 494
Query: 205 ACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
GN++ A + N+M N C P T N ++ + G E A+KL +++
Sbjct: 495 GFSKQGNVREAVELMNEMIANNCFPIPSTFNAVITGFCRQGKVESALKLVEDIT------ 548
Query: 264 NREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+G V P+ T++ ++D V+ +M+ G+
Sbjct: 549 -----ARGCV-PNTETYSPLIDVLCRNGDLQKAMQVFMQMVDKGI 587
>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
Length = 554
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/365 (21%), Positives = 154/365 (42%), Gaps = 47/365 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM----------------RSLPKK-------KF 41
PD ++R++ V + G ++E+ ++ +M RSL +K +F
Sbjct: 171 PDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEF 230
Query: 42 KTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
LE P P++V Y A ++ +R+ + AF VL+++ +G KP+ T+ +++
Sbjct: 231 FRRMLEMGTP---PNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDG 287
Query: 102 MLACGKYNLVYEFFRKVQKS--YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+ G + F K+ KS Y PN Y V++ REGK A + M +G+
Sbjct: 288 LCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKP 347
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219
+ Y L C G + A M+K+ + P + +Y +I G IQ A +
Sbjct: 348 NTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVL 407
Query: 220 ----NQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
+Q F + +T I++ + + G A+ LF M E+ P
Sbjct: 408 RMATSQGLKF---DKITYTILITEHCKQGHITYALDLFDRMVENG------------CCP 452
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITW 335
DI + +++ +++ ++ + + + L GL + + MI + G+ + +
Sbjct: 453 DIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTMALRVF 512
Query: 336 EHLAR 340
E + +
Sbjct: 513 ERMVQ 517
>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Glycine max]
Length = 830
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/327 (22%), Positives = 141/327 (43%), Gaps = 36/327 (11%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D AY +I ++G K D+ D M + L+P +V YN +L+
Sbjct: 215 DVRAYTTILHAYARSGKYKRAIDLFDKMEGIG---------------LDPTLVTYNVMLD 259
Query: 66 ACVRR-KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE---FFRKVQ-K 120
+ + W +L +++ +G + T V+ ACG+ ++ E F +++
Sbjct: 260 VYGKMGRSWGRILELLDEMRSKGLEFDEFTCSTVIS---ACGREGMLDEARKFLAELKLN 316
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
Y P + Y ++ + G EA+S +++ME + Y +LA AG +E
Sbjct: 317 GYKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEG 376
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
+ +D + P ++YT +I A +G +A +F++MK+ C+PN+ T N ++
Sbjct: 377 MAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAM 436
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ E+ +K+ EM + NR T+NTML C+ E + + + V
Sbjct: 437 LGKKSRTEDVIKVLCEMKLNGCAPNRA------------TWNTMLAVCSEEGKHNYVNKV 484
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAG 326
+ M + G + +I +R G
Sbjct: 485 LREMKNCGFEPDKDTFNTLISSYARCG 511
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/277 (20%), Positives = 119/277 (42%), Gaps = 14/277 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P + YNA+LNA R W+ A V+Q ++ +G KP+ T+Y L++ G + +
Sbjct: 530 PCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKV 589
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++ + P+ + + LV + + A + +++ G + +
Sbjct: 590 EKEIYDGQVFPSWILLRTLVLSNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFSR 649
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVT 232
+A + I + +P + +Y L+ + A + ++N P++V+
Sbjct: 650 NKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREDECWKAEEVLKGIQNSVPEPDVVS 709
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++K + GL +EA+++ EM KG + P I T+NT L A +
Sbjct: 710 YNTVIKGFCRKGLMQEAIRVLSEMT-----------TKG-IQPTIVTYNTFLSGYAGMEL 757
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+D+ V + M+ H + + ++ +AGK E
Sbjct: 758 FDEANEVIRFMIEHNCRPSELTYKILVDGYCKAGKHE 794
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/300 (20%), Positives = 130/300 (43%), Gaps = 19/300 (6%)
Query: 31 DSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKP 90
+S S+ K F +E++ D+ Y +L+A R +++ A + +++ G P
Sbjct: 194 ESQHSIASKLFDLIPVEKY----SLDVRAYTTILHAYARSGKYKRAIDLFDKMEGIGLDP 249
Query: 91 SATTYGLVMEVMLACGK-YNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSA 148
+ TY ++++V G+ + + E +++ + + +++ REG DEA
Sbjct: 250 TLVTYNVMLDVYGKMGRSWGRILELLDEMRSKGLEFDEFTCSTVISACGREGMLDEARKF 309
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+ +++ G +Y + + AG EAL + ++ P ++Y L +
Sbjct: 310 LAELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVR 369
Query: 209 SGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
+G + + + M + PN +T ++ AY + G ++A++LF +M +
Sbjct: 370 AGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLG------- 422
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
P++YT+N++L + R +D+ V M +G N M+ S GK
Sbjct: 423 -----CAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGK 477
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 123/331 (37%), Gaps = 66/331 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P TV Y S+ G+AG E ++ M D PD + YN +
Sbjct: 320 PGTVMYNSMLQVFGKAGIYTEALSILKEME---------------DNNCPPDSITYNELA 364
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
VR + V+ + +G P+A TY V++ G+ + F K++
Sbjct: 365 ATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCA 424
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y ++ L ++ +T++ + + +M+ G C+
Sbjct: 425 PNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNG---------------CA---------- 459
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--PNLVTCNIMVKAYL 241
P ++ ++ C + G + +MKN C P+ T N ++ +Y
Sbjct: 460 ----------PNRATWNTMLAVCSEEGKHNYVNKVLREMKN-CGFEPDKDTFNTLISSYA 508
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G ++ K++ EM K G P + T+N +L+A A W E V +
Sbjct: 509 RCGSEVDSAKMYGEMV-----------KSGFT-PCVTTYNALLNALAHRGDWKAAESVIQ 556
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLE 332
M G N + ++ S+AG V +E
Sbjct: 557 DMQTKGFKPNETSYSLLLHCYSKAGNVRGIE 587
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/338 (20%), Positives = 128/338 (37%), Gaps = 69/338 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKKFKTGTLERW------------ 49
PD++ Y +A T +AG + E VID+M S +P T ++ +
Sbjct: 355 PDSITYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRL 414
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
D P++ YN+VL ++ + E VL ++K G P+ T+ ++ V
Sbjct: 415 FSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSE 474
Query: 105 CGKYNLVYEFFRK------------------------------------VQKSYIPNALA 128
GK+N V + R+ V+ + P
Sbjct: 475 EGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTT 534
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
Y L+N L G A S ++DM+ +G + Y L C AG +I
Sbjct: 535 YNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIY 594
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEHGLFE 247
P + L+ + +++ F+Q++ + P+LV N M+ + + +F
Sbjct: 595 DGQVFPSWILLRTLVLSNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFS 654
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
+A ++ + E + P+++T+N ++D
Sbjct: 655 KAREMLHFIHECG------------LQPNLFTYNCLMD 680
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPD+V YN V+ R+ + A VL ++ +G +P+ TY + ++ E
Sbjct: 704 EPDVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANE 763
Query: 114 FFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
R ++ + P+ L YK+LV+ + GK +EA+ V ++ I
Sbjct: 764 VIRFMIEHNCRPSELTYKILVDGYCKAGKHEEAMDFVTKIKEIDI 808
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/232 (19%), Positives = 97/232 (41%), Gaps = 14/232 (6%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E +D ++ P ++ ++ + + + G QL++ G KP +V+ ML+
Sbjct: 592 EIYDGQVFPSWILLRTLVLSNHKCRHLRGMERAFDQLQKYGYKPDL----VVINSMLSMF 647
Query: 107 KYNLVYEFFRKV-----QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
N ++ R++ + PN Y L++ RE + +A ++ ++
Sbjct: 648 SRNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREDECWKAEEVLKGIQNSVPEPDV 707
Query: 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y + + C G +EA+ + ++ +P +V+Y + A +
Sbjct: 708 VSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRF 767
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGL 272
M ++ C P+ +T I+V Y + G EEAM ++ E I+ +D K +
Sbjct: 768 MIEHNCRPSELTYKILVDGYCKAGKHEEAMDFVTKIKE----IDISFDDKSV 815
>gi|297827821|ref|XP_002881793.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
gi|297327632|gb|EFH58052.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
Length = 822
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/377 (22%), Positives = 154/377 (40%), Gaps = 40/377 (10%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSM--------RSLPKKKFKT-GTLERWDPR 52
S PD Y ++ G+AG + +++D M RS G+ W
Sbjct: 173 SCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWRQA 232
Query: 53 LE-----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
LE PD+V +N VL+A +Q+ A + +K +P TT+ +++
Sbjct: 233 LEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYC 292
Query: 102 MLACGKYNLVYEFFRKVQKSYI---PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ G+ + + F ++ P+ + + +++ G+ + + E M G+
Sbjct: 293 LSKLGQSSQALDVFNSMRDKRAECRPDVVTFTSIMHLYSVRGEIENCRAVFEAMLAEGLK 352
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
+ Y L G E AL I + P VVSYT L+ + S A +
Sbjct: 353 PNIVSYNALMGAYAVHGMSENALSVFGDIKRNGIVPDVVSYTSLLNSYGRSRQPGKAKEV 412
Query: 219 FNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI 277
F M K PN+VT N ++ AY +G EA+++F++M +D P++
Sbjct: 413 FLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGTK------------PNV 460
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLEI 333
+ T+L AC+ K+ ++E V G++ N + I A ++E L +
Sbjct: 461 VSVCTLLAACSRSKKKVNVETVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQT 520
Query: 334 TWEHLARADRITPPALI 350
+ +AD +T LI
Sbjct: 521 MRKKKVKADSVTFTILI 537
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 116/245 (47%), Gaps = 18/245 (7%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
+++W +PD Y+A++NA R QW A ++ + + PS +TY ++ +
Sbjct: 169 MQKWS--CKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSS 226
Query: 106 GKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKT-DEAVSAVEDMERRGIVGSAALY 164
G + E +K+ + + L +V + ++ G+ +A+S E M+ + +
Sbjct: 227 GNWRQALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTF 286
Query: 165 YDLARCLCSAGKCEEALMQMDKI--CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+ CL G+ +AL + + + +P VV++T ++ G I+N +F M
Sbjct: 287 NIIIYCLSKLGQSSQALDVFNSMRDKRAECRPDVVTFTSIMHLYSVRGEIENCRAVFEAM 346
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
PN+V+ N ++ AY HG+ E A+ +F ++ K+ ++PD+ ++
Sbjct: 347 LAEGLKPNIVSYNALMGAYAVHGMSENALSVFGDI------------KRNGIVPDVVSYT 394
Query: 282 TMLDA 286
++L++
Sbjct: 395 SLLNS 399
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/362 (22%), Positives = 136/362 (37%), Gaps = 67/362 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS-----LPKKKFKTGTLERWDPR------- 52
PDT + I L + G + DV +SMR P T + + R
Sbjct: 281 PDTTTFNIIIYCLSKLGQSSQALDVFNSMRDKRAECRPDVVTFTSIMHLYSVRGEIENCR 340
Query: 53 ----------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
L+P+IV YNA++ A E A V +K+ G P +Y ++
Sbjct: 341 AVFEAMLAEGLKPNIVSYNALMGAYAVHGMSENALSVFGDIKRNGIVPDVVSYTSLLNSY 400
Query: 103 LAC---GKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG--- 156
GK V+ RK ++ PN + Y L++ G EAV ME+ G
Sbjct: 401 GRSRQPGKAKEVFLMMRKERRK--PNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGTKP 458
Query: 157 -IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV----VSYTGLIQACLDSGN 211
+V L LA C S K + ++ + A + +Y I + +++
Sbjct: 459 NVVSVCTL---LAACSRSKKK-----VNVETVLSAAQSRGINLNTAAYNSAIGSYINAAE 510
Query: 212 IQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE---- 266
++ A ++ M K + VT I++ + EA+ +EM + S + +E
Sbjct: 511 LEKAIALYQTMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSS 570
Query: 267 ----YDKKGLVI---------------PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
Y K+G V PD+ + +ML A A ++W ++ M +G
Sbjct: 571 VLCAYSKQGQVTEAESIFNQMKMAGCKPDVIAYTSMLHAYNASEKWGKACELFLEMEANG 630
Query: 308 LH 309
+
Sbjct: 631 IE 632
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 90/221 (40%), Gaps = 26/221 (11%)
Query: 117 KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
K QK+Y Y +++ R D+A +M++ A Y L AG+
Sbjct: 134 KSQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQ 193
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNI 235
A+ MD + + A P +Y LI AC SGN + A + +M N P+LVT NI
Sbjct: 194 WRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWRQALEVCKKMTDNGVGPDLVTHNI 253
Query: 236 MVKAYLEHGLFEEAMKLFQEM-------------------------AEDSNHINREYDKK 270
++ AY + +A+ F+ M ++ + N DK+
Sbjct: 254 VLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDVFNSMRDKR 313
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
PD+ TF +++ + ++ V++ ML GL N
Sbjct: 314 AECRPDVVTFTSIMHLYSVRGEIENCRAVFEAMLAEGLKPN 354
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/291 (20%), Positives = 120/291 (41%), Gaps = 29/291 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ G G + E ++ M + GT +P++V +L
Sbjct: 423 PNVVTYNALIDAYGSNGFLAEAVEIFRQME-------QDGT--------KPNVVSVCTLL 467
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
AC R K+ VL + +G + Y + + + ++ ++K +
Sbjct: 468 AACSRSKKKVNVETVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQTMRKKKVK 527
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+++ + +L++ R K EA+S +++ME I + +Y + G+ EA
Sbjct: 528 ADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESI 587
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+++ KP V++YT ++ A S A +F +M+ N P+ + C+ +++A+ +
Sbjct: 588 FNQMKMAGCKPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNK 647
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
G L M E +E G V +I++ AC + W
Sbjct: 648 GGQPSNVFVLMDLMRE------KEVPFTGAVFFEIFS------ACNTLQEW 686
>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
Length = 428
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 128/285 (44%), Gaps = 29/285 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + L +AG + + ++++ M +R + PD+V + +++
Sbjct: 149 PDVVTYNTFISGLCKAGKLDKGLEMLEEM-------------DRGG--ISPDVVTFCSII 193
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YI 123
+ + + + AF V + + ++G P + TY ++++ + + + V E + KS +
Sbjct: 194 SGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHY 253
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ Y L++ L R G + A A E G V + LC +GK A
Sbjct: 254 ALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNI 313
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
+ + + + P ++SY +I SGN+ +A + +M C P+++ N ++ +
Sbjct: 314 LLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFC 373
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+ G +A +L +EM K + +PD+ T+NTM+D
Sbjct: 374 KAGRLSQAQQLLKEM-----------KAKNICVPDVVTYNTMIDG 407
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 116/257 (45%), Gaps = 15/257 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLK-QQGQKPSATTYGLVMEVMLACGKYNLVY 112
EPD+V YN++++ + + A VLQ+L + G+ P TY + + GK +
Sbjct: 112 EPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGL 171
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E ++ + I P+ + + +++ L + + D+A + M RG V + Y + L
Sbjct: 172 EMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNL 231
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNL 230
A + + ++ + K + L +Y LI A + +G+I++A++ + Q M+ C +
Sbjct: 232 SRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEV 291
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T N + A G F A + M E + +P++ ++N ++D
Sbjct: 292 YTHNAFIGALCRSGKFPLAKNILLGMIESGS------------LPNLLSYNFVIDGLCKS 339
Query: 291 KRWDDLELVYKRMLHHG 307
DD + ++ML G
Sbjct: 340 GNVDDAWKLSRKMLDSG 356
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 122/289 (42%), Gaps = 15/289 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D +YN ++ + ++ A +L + G S TY +++ + G +
Sbjct: 9 DAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALL 68
Query: 116 RKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+K+ + PN + Y L++ L + + +A+ V+ M R G Y L LC A
Sbjct: 69 QKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMA 128
Query: 175 GKCEEA-LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+ ++A L+ + + + P VV+Y I +G + + +M + SP++VT
Sbjct: 129 NRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVT 188
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
++ + ++A ++F+ M E +PD T++ MLD + R
Sbjct: 189 FCSIISGLCKANRIDDAFQVFKGMLERG------------CVPDSLTYSIMLDNLSRANR 236
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
D +E V + M+ G + + + +I RAG +E +E A
Sbjct: 237 LDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEA 285
>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
Length = 698
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 137/328 (41%), Gaps = 31/328 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ-GQKPSATTYGLVMEVMLACGKYNLV 111
PD+ +N ++ ++ E AF V++++++ G PS T+ LV+ + GK
Sbjct: 150 FRPDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAA 209
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F V++S +A + +L+N L + G +A S ++ G Y + L
Sbjct: 210 MDHFEAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWL 269
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
K +EA+ M+KI P + +Y L+ G ++ A + ++ N C+P++
Sbjct: 270 AKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDV 329
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAE------------------------DSNHINRE 266
VT ++ + EA KLF+EMA ++ + +
Sbjct: 330 VTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKT 389
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
G V PD+ T +TM+D + R ++K M GL N + +I +A
Sbjct: 390 MTSHGCV-PDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKAR 448
Query: 327 K----VELLEITWEHLARADRITPPALI 350
K +E+L + D IT LI
Sbjct: 449 KMDCALEMLAQMKKAFCTPDTITYNILI 476
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 126/306 (41%), Gaps = 39/306 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V ++ L +AG I + SM + L P+ VVY+A++
Sbjct: 397 PDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARG---------------LAPNEVVYSALI 441
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + ++ + A +L Q+K+ P TY ++++ + G FF + ++
Sbjct: 442 HGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCK 501
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y +L++ L + G TD A ++DM S +Y L LC +GK E M
Sbjct: 502 PDVYTYNILISGLCKAGNTDAACGVLDDMS-----SSRFVYSSLVDGLCKSGKLEGGCML 556
Query: 184 MDKICK--VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241
++ + VAN + T LI + + A +FN ++ P+ N ++ A +
Sbjct: 557 FHEMERSGVANSQ---TRTRLIFHLCKANRVDEAVSLFNAIRKEGMPHPYAYNSIISALI 613
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G E ++QEM R + PD T+N +L+ R D Y
Sbjct: 614 KSGKVNEGQAVYQEM-------TRWWK------PDRVTYNALLNGMIGANRMDRAHYYYL 660
Query: 302 RMLHHG 307
M G
Sbjct: 661 EMTGRG 666
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/327 (18%), Positives = 139/327 (42%), Gaps = 35/327 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y ++ L + G ++E D++ + D PD+V Y +++
Sbjct: 292 PTIATYNALLNGLCKMGRLEEAIDLLRKI---------------VDNGCTPDVVTYTSLI 336
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ + K+ A+ + +++ +G Y ++ +L GK ++ + +
Sbjct: 337 DGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCV 396
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + +++ L + G+ AV + ME RG+ + +Y L LC A K + AL
Sbjct: 397 PDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 456
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ ++ K P ++Y LI SG+++ A F++M + C P++ T NI++ +
Sbjct: 457 LAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCK 516
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + A + +M+ + +++++D + + +++
Sbjct: 517 AGNTDAACGVLDDMSSSR-----------------FVYSSLVDGLCKSGKLEGGCMLFHE 559
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
M G+ N++ R+I +A +V+
Sbjct: 560 MERSGVA-NSQTRTRLIFHLCKANRVD 585
>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/327 (19%), Positives = 143/327 (43%), Gaps = 29/327 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y +I +G ++ ++ +M+ ++EPD Y +++
Sbjct: 254 PNIVTYNTIVHGYCSSGRVEAADAILTTMKR---------------QKIEPDSFTYGSLI 298
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ ++ + E A + +++ Q+G +PSA Y +++ G ++ + ++ K I
Sbjct: 299 SGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGIS 358
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P Y L++ L+ E +TDEA +++++ +GI A Y L C ++A +
Sbjct: 359 PTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLL 418
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
D++ KP +YT L+ ++ A +F ++ + P+++ N ++ +
Sbjct: 419 HDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCS 478
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ + A +L ++M + V PD TFNT++ E + ++ ++
Sbjct: 479 NSNVKGAFELLKDM------------DRMKVPPDEVTFNTIMQGHCREGKVEEARELFDE 526
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
M G+ + +I SR G ++
Sbjct: 527 MKRRGIKPDHISFNTLISGYSRRGDIK 553
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 133/304 (43%), Gaps = 35/304 (11%)
Query: 14 AVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQW 73
A+ G I+E+F+ + + R + FK+ +V++ ++ +C +
Sbjct: 123 ALGGGTTNSIREIFEFLAASRD--RLGFKSS-------------IVFDYLIKSCCDMNRA 167
Query: 74 EGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK----YNLVYEFFRKVQKSYIPNALAY 129
+ AF +K++G P+ T ++ + L + + L E FR KS + +
Sbjct: 168 DEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSV---YTF 224
Query: 130 KVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK 189
+++N L +EGK +A V ME G+ + Y + CS+G+ E A + + +
Sbjct: 225 NIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKR 284
Query: 190 VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEE 248
+P +Y LI G ++ A+ IF +M + P+ V N ++ + G +
Sbjct: 285 QKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDM 344
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
A EM KKG + P + T+N+++ A E+R D+ E + K + G+
Sbjct: 345 ASAYKDEML-----------KKG-ISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGI 392
Query: 309 HFNA 312
+A
Sbjct: 393 SPDA 396
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 110/238 (46%), Gaps = 14/238 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PD + YN ++N R + AF + ++ G KP+ TY ++ V+ +
Sbjct: 392 ISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEAD 451
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F+K+ + +P+ + + L++ A ++DM+R + + + +
Sbjct: 452 DLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGH 511
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNL 230
C GK EEA D++ + KP +S+ LI G+I++A + N+M + +P +
Sbjct: 512 CREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTV 571
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
+T N +V+ ++ + A +L +EM KG+ PD T+ T+++ A
Sbjct: 572 LTYNALVQGLCKNQEGDLAEELLKEMVS-----------KGMT-PDDTTYFTLIEGIA 617
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/256 (19%), Positives = 103/256 (40%), Gaps = 25/256 (9%)
Query: 90 PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY----IPNALAYKVLVNTLWREGKTDEA 145
PS +++ L G N + E F + S +++ + L+ + + DEA
Sbjct: 111 PSPKPALHLLKQALGGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEA 170
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
M+ +G++ + L + E A + ++ ++ K V ++ +I
Sbjct: 171 FECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINV 230
Query: 206 CLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
G ++ A M+ + PN+VT N +V Y G E A + M
Sbjct: 231 LCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTM-------- 282
Query: 265 REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI----- 319
K+ + PD +T+ +++ + R ++ +++ M+ GL +A + +I
Sbjct: 283 ----KRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCN 338
Query: 320 ---LDASRAGKVELLE 332
LD + A K E+L+
Sbjct: 339 KGNLDMASAYKDEMLK 354
>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
Length = 1007
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/354 (21%), Positives = 144/354 (40%), Gaps = 46/354 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM---RSLPKKKFKTGTLERWDPRLEPDIVVYN 61
P+TV Y ++ L +G + E FD+I M LP TG P I + +
Sbjct: 283 PNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTG----------PIIALCD 332
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
C +E A+ + +K +G +P+ TY ++ + G + F ++ +
Sbjct: 333 M---GC-----YEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRD 384
Query: 122 YI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ PN + Y L+N L + A + M R G + Y ++ + C G ++A
Sbjct: 385 GVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKA 444
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKA 239
++ M+ + + + +V+Y +I+ DSGN +A I + M++ C P+ + ++
Sbjct: 445 MLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICG 504
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINR-----------------------EYDKKGLVIPD 276
+ + E A LF EM +D N E+ K+ P+
Sbjct: 505 FCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 564
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ T+N ++ + + E + K M+ G+ N + MI + G L
Sbjct: 565 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSL 618
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/362 (21%), Positives = 147/362 (40%), Gaps = 40/362 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y ++ L + G++ + ++ KK F++ + PD Y +++
Sbjct: 213 PNLLIYNAVINALCKDGNVAD-------AETIMKKVFES--------EMSPDTFTYTSMI 257
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
R+ + A V Q+ ++G +P+ TY ++ + G+ N ++ R+ + +
Sbjct: 258 LGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGIL 317
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P A + L G ++A DM+ +G + Y L LC +G + A+
Sbjct: 318 PTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGL 377
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + P V+Y LI +++ I+ A + N M +N CSPN+VT N M+K Y
Sbjct: 378 FHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCI 437
Query: 243 HGLFEEAMKLFQEMAEDS--------NHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
G ++AM + M + N I + Y G + + M D W
Sbjct: 438 LGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 497
Query: 295 DLELV---------------YKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
EL+ + M+ GL N + +I + K++ EH+
Sbjct: 498 YTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMK 557
Query: 340 RA 341
R+
Sbjct: 558 RS 559
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 126/302 (41%), Gaps = 29/302 (9%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG---KYNLV 111
P+ V YNA++N V ++ + AF VL + + G P+ TY +++ G K LV
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+Q+ + N + Y ++ G T A+ ++ M G Y +L
Sbjct: 448 MN--NMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 505
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C K E A +++ P V+YT LI + A + MK + C PN+
Sbjct: 506 CKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNV 565
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDS---NHINREYDKKGLV-------------- 273
T N+++ + F A +L + M E+ N + GL
Sbjct: 566 QTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNK 625
Query: 274 ------IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
+P++ T+++++ A E + ++ E ++ + HGL + +++MI +GK
Sbjct: 626 MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGK 685
Query: 328 VE 329
VE
Sbjct: 686 VE 687
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 78/152 (51%), Gaps = 1/152 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++ YN +++ ++ + GA + + + ++G P+ TY +++ + G +L E
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F K +++ +PN L Y L+ L +EGK +EA + ++ER G++ Y +
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 682
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+GK E A + ++ K +P + +Y LI+
Sbjct: 683 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKG 714
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 103/253 (40%), Gaps = 17/253 (6%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+ V Y +I +G+ ++D MR D +PD Y ++
Sbjct: 459 NLVTYNTIIKGYCDSGNTTSALRILDLMR---------------DGGCKPDEWSYTELIC 503
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ + E AF + ++ G P+ TY +++ K + +++S P
Sbjct: 504 GFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRP 563
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N Y VL++ L ++ A + M GI + Y + LC G AL
Sbjct: 564 NVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMF 623
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
+K+ + P +++Y+ LI+A G ++ A +F ++ ++ P+ +T M++AY+
Sbjct: 624 NKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMS 683
Query: 244 GLFEEAMKLFQEM 256
G E A M
Sbjct: 684 GKVEHAFNFLGRM 696
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 105/294 (35%), Gaps = 49/294 (16%)
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE-FFRKVQKS 121
++ +C ++ L L Q G + Y ++ + G V + + R + +
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210
Query: 122 YIPNALAYKVLVNTLWREGKT-----------------------------------DEAV 146
PN L Y ++N L ++G D A+
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
M + G + Y L LC +G+ EA + ++ P + TG I A
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIAL 330
Query: 207 LDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
D G ++A +F MKN C PN+ T ++ GL + A+ LF M+ D
Sbjct: 331 CDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDG----- 385
Query: 266 EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
V P+ T+N +++ +R +V M +G N + MI
Sbjct: 386 -------VFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMI 432
>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 717
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/371 (21%), Positives = 149/371 (40%), Gaps = 32/371 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V++ S+ + G I E F + D ++ L P ++ YN ++
Sbjct: 353 PDIVSFNSLLYGYCRTGCISEAFLLFDELKC---------------RDLVPTVITYNTLI 397
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + A + +++ QG P TY +++ G ++ FF + + K
Sbjct: 398 HGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLK 457
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ AY + + T A S E+M G Y LC G EEA
Sbjct: 458 PDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDL 517
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + P V+YT +I + +G+++ A +FN+M +P++VT +++ A+
Sbjct: 518 LENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAA 577
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ + A F +M E S V ++ T+N +++ +R D+ +
Sbjct: 578 KQMLDLAFMYFSKMLEKS------------VPANVITYNAIINGLCMTRRMDEAYKYFDE 625
Query: 303 MLHHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLARADRITPPALIKERFCNRLENK 361
M G+ N + +I ++ G E L + E L R +I P + F L
Sbjct: 626 MEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDR--KIQPDSFTHSVFLKNLHRD 683
Query: 362 DYGSAISCLVS 372
A+ C+ S
Sbjct: 684 YQVHAVQCVES 694
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 115/282 (40%), Gaps = 27/282 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD+ N +L A V ++Q G KP+ TY +++ G+ +
Sbjct: 176 LLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQAL 235
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E ++Q + PN + Y VLVN L ++G+ ++A +E+M G+ SA Y L
Sbjct: 236 ELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGF 295
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C G EA ++++ P + +Y L+ + F+ M K+ +P++
Sbjct: 296 CQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDI 355
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMA------------------------EDSNHINRE 266
V+ N ++ Y G EA LF E+ + + + +E
Sbjct: 356 VSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKE 415
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
+GL PDI+T+ +++ C + ML GL
Sbjct: 416 MTDQGL-FPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGL 456
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 75/382 (19%), Positives = 148/382 (38%), Gaps = 67/382 (17%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YP+ V Y + L + G +++ +I+ M + L YN +
Sbjct: 247 YPNDVTYNVLVNGLSKKGELEQAKGLIEEM---------------LNSGLNVSAYTYNPL 291
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-Y 122
+N ++ + AF +++++ + P+ +TY +M + + V F + KS +
Sbjct: 292 INGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKF 351
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ +++ L+ R G EA ++++ R +V + Y L LC G + AL
Sbjct: 352 TPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALR 411
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-------KNFC--------- 226
++ P + +YT L+ C G + A FN+M F
Sbjct: 412 LKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEM 471
Query: 227 --------------------SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
P+++T N+ V A + G FEEA L + M D
Sbjct: 472 KIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDG------ 525
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+IPD T+ ++++ V+ ML G+ + + +L + A
Sbjct: 526 ------LIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTY--TVLIHAHAA 577
Query: 327 KVELLEITWEHLARADRITPPA 348
K ++L++ + + ++ + PA
Sbjct: 578 K-QMLDLAFMYFSKMLEKSVPA 598
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 114/260 (43%), Gaps = 27/260 (10%)
Query: 29 VIDSMRSLPKKKFKTGTLERW---DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ 85
V+ SMR P+ + RW P + V+ A+L+ V A+WV++++
Sbjct: 91 VLHSMRIRPRVALR---FFRWVMAQPDFKESEFVFCAILDILVGNDLMHAAYWVMERV-- 145
Query: 86 QGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEA 145
S +G+V +V++A G + F + ++ +P+ ++ L E +A
Sbjct: 146 ----VSFEMHGVV-DVLIA-GHVXCLLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKA 199
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+ ME+ GI + Y + C G+ ++AL + ++ + P V+Y L+
Sbjct: 200 KNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNG 259
Query: 206 CLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
G ++ A + +M N + + T N ++ + + GLF EA L +EM +N
Sbjct: 260 LSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEM------VN 313
Query: 265 REYDKKGLVIPDIYTFNTML 284
R P + T+NT++
Sbjct: 314 RR------AFPTLSTYNTLM 327
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 75/162 (46%), Gaps = 14/162 (8%)
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
L+ DK+ + P V + +++ D + A ++ M+ F P +VT N M+ +
Sbjct: 165 LLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDS 224
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
Y + G ++A++L EM E + P+ T+N +++ + + + + +
Sbjct: 225 YCKEGRVDQALELLSEMQERGCY------------PNDVTYNVLVNGLSKKGELEQAKGL 272
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLAR 340
+ ML+ GL+ +A + +I + G VE ++ E + R
Sbjct: 273 IEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNR 314
>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 680
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 122/273 (44%), Gaps = 16/273 (5%)
Query: 39 KKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLV 98
K+ K G ++PDIV YN++++ + A +L + +G + +Y +V
Sbjct: 297 KEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIV 356
Query: 99 MEVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
+ + + F+++ K PN + Y L++ L + G+ A+ ++ M RG
Sbjct: 357 INGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQ 416
Query: 158 VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217
Y + LC ++A+ + K+ +P + +YT LI G +++A
Sbjct: 417 QPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARN 476
Query: 218 IFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
IF + K + + + T +M++ + HGLF+EA+ L +M ++S IP
Sbjct: 477 IFEDLLVKGY-NLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNS------------CIP 523
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
D T+ ++ + + D E + + M+ GL
Sbjct: 524 DAITYEIIICSLFDKDENDKAEKLLREMITRGL 556
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 120/296 (40%), Gaps = 15/296 (5%)
Query: 46 LERWDPRL-EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L R D +L + D+V+Y+ ++++ + K AF + ++ + + TY ++
Sbjct: 198 LRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCI 257
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK F K+ I P+ + +LV+ +EG+ EA + + M ++GI
Sbjct: 258 VGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVT 317
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L C + A ++ + V SY +I + A +F +M
Sbjct: 318 YNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMH 377
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ PN++T N ++ + G A++L M + PDI T+++
Sbjct: 378 HKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQ------------PDIITYSS 425
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
+LDA D + ++ G+ N + +I + G++E +E L
Sbjct: 426 ILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDL 481
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/314 (18%), Positives = 124/314 (39%), Gaps = 18/314 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPD + N + + Q A +L G +YG ++ + G+ E
Sbjct: 137 EPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALE 196
Query: 114 FFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R+V + + + Y +++++ ++ ++A +M R I + Y L C
Sbjct: 197 LLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFC 256
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY-IFNQMKNFCSPNLV 231
GK ++A+ +K+ P V ++ L+ A G ++ A + MK P++V
Sbjct: 257 IVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIV 316
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ Y A + M+ V + ++N +++ K
Sbjct: 317 TYNSLMDGYCLVNEVNMAKSILNTMSHRG------------VTATVRSYNIVINGFCKIK 364
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPP 347
D ++K M H + N + +I ++G++ EL+++ + + D IT
Sbjct: 365 MVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYS 424
Query: 348 ALIKERFCNRLENK 361
+++ N L +K
Sbjct: 425 SILDALCKNHLVDK 438
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/310 (19%), Positives = 129/310 (41%), Gaps = 82/310 (26%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ + Y S+ L ++G I ++ID M D +PDI+ Y+++
Sbjct: 382 FPNVITYNSLIDGLCKSGRISYALELIDLMH---------------DRGQQPDIITYSSI 426
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK---------------Y 108
L+A + + A +L +LK QG +P+ TY ++++ + G+ Y
Sbjct: 427 LDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGY 486
Query: 109 NLVYEFFRKVQKSY---------------------IPNALAYKVLVNTLWREGKTDEAVS 147
NL + + + + IP+A+ Y++++ +L+ + + D+A
Sbjct: 487 NLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEK 546
Query: 148 AVEDMERRGIV------GSAALYY----------DLARCLCSAGKCEEALMQMDKI-CKV 190
+ +M RG++ GS +L + D +C S A + +++I C
Sbjct: 547 LLREMITRGLLYSFLEYGSWSLSFMAAPAHFLNNDSLQCTSSQESGNWAKLLLERIYCDC 606
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV----TCNIMVKAYLEHGLF 246
L ++ + +++ + I ++ + T +M++ + HGLF
Sbjct: 607 V----------LTKSNMRDKDVECPSVIIYSTCDWSKQGYILDVNTYTVMIQGFCSHGLF 656
Query: 247 EEAMKLFQEM 256
+E++ L +M
Sbjct: 657 DESLALLSKM 666
>gi|255661014|gb|ACU25676.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 376
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 142/295 (48%), Gaps = 15/295 (5%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ ++ PD VVYNA+LN R ++ + F + + + ++G + S +++ ++M + K +
Sbjct: 18 ESKVSPDAVVYNAMLNGFFRVRRIKDCFKLWELMGREGSR-SVSSFNIMMRGLFDNAKVD 76
Query: 110 LVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
V + +++S Y+ +++ Y +LV+ + G ++++ +E ER+G V A Y +
Sbjct: 77 EVISIWELMKESGYVEDSITYGILVHGFCKNGYLNKSLHVLEIAERKGGVLDAFAYSAMI 136
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
LC K ++A+ ++ + K KP Y LI + + ++A + +M S
Sbjct: 137 NGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGASKFEDAIRVLREMGTTHFS 196
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P +VT + ++ + F EA L +EM + KGL P + T++ ++
Sbjct: 197 PTVVTYSTLINGLCKGERFGEAYDLVKEMLD-----------KGLN-PSVITYSLLIKGL 244
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARAD 342
+ + + ++ +++ G + + H MI GK++L + ++ R D
Sbjct: 245 CLDCKVEKAFQLWNQVISKGFKPDVQMHNIMIHGLCSVGKMQLALSLYFNMNRWD 299
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 108/239 (45%), Gaps = 14/239 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D Y+A++N + + + A VL + + G KP+A Y ++ ++ K+
Sbjct: 128 DAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGASKFEDAIRVL 187
Query: 116 RKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
R++ ++ P + Y L+N L + + EA V++M +G+ S Y L + LC
Sbjct: 188 REMGTTHFSPTVVTYSTLINGLCKGERFGEAYDLVKEMLDKGLNPSVITYSLLIKGLCLD 247
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
K E+A +++ KP V + +I G +Q A ++ M + C+PNLVT
Sbjct: 248 CKVEKAFQLWNQVISKGFKPDVQMHNIMIHGLCSVGKMQLALSLYFNMNRWDCAPNLVTH 307
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N +++ + + G F A+ ++ + + + PDI ++N L + R
Sbjct: 308 NTLMEGFYKDGDFRNALVIWARIMRNG------------LQPDIISYNITLKGLCSCNR 354
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/187 (19%), Positives = 75/187 (40%), Gaps = 17/187 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y ++ L + E +D++ M D L P ++ Y+ ++
Sbjct: 197 PTVVTYSTLINGLCKGERFGEAYDLVKEM---------------LDKGLNPSVITYSLLI 241
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ E AF + Q+ +G KP + +++ + + GK L + + +
Sbjct: 242 KGLCLDCKVEKAFQLWNQVISKGFKPDVQMHNIMIHGLCSVGKMQLALSLYFNMNRWDCA 301
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + L+ +++G A+ + R G+ Y + LCS + A++
Sbjct: 302 PNLVTHNTLMEGFYKDGDFRNALVIWARIMRNGLQPDIISYNITLKGLCSCNRISGAILF 361
Query: 184 M-DKICK 189
+ D +CK
Sbjct: 362 LHDAVCK 368
>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Vitis vinifera]
Length = 819
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 139/306 (45%), Gaps = 30/306 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V + +I Q G I + + I+ M ++ L P+ V YN+++
Sbjct: 390 PVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVG---------------LRPNHVTYNSLV 434
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
K E A ++++ ++G P+ TY +++ ++ ++ +++K +
Sbjct: 435 KKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLK 494
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN ++Y L+N L ++ EA + DM RG+V +A +Y L C AGK ++A
Sbjct: 495 PNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRF 554
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
D++ P +V+Y LI G + A + +++ + S +++T N ++ Y
Sbjct: 555 FDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSS 614
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G ++A++L++ M KK + P + T++ ++ C E +E +Y+
Sbjct: 615 AGNVQKALELYETM------------KKSGIKPTLNTYHRLIAGCGKEG-LVLVEKIYQE 661
Query: 303 MLHHGL 308
ML L
Sbjct: 662 MLQMNL 667
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 127/303 (41%), Gaps = 17/303 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P V +N ++N + A+ +++++ G +P+ TY +++
Sbjct: 388 LAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAE 447
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +K V+K +PN Y L++ R D +E+ME++G+ + Y L CL
Sbjct: 448 KCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCL 507
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C EA + + + P Y LI +G +++A F++M P L
Sbjct: 508 CKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTL 567
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT NI++ + G EA L E+ +KGL D+ T+N+++ ++
Sbjct: 568 VTYNILINGLCKKGKVMEAENLASEIT-----------RKGLSF-DVITYNSLISGYSSA 615
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR---ADRITPP 347
+Y+ M G+ + R+I + G V + +I E L DR+
Sbjct: 616 GNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEGLVLVEKIYQEMLQMNLVPDRVIYN 675
Query: 348 ALI 350
ALI
Sbjct: 676 ALI 678
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 82/397 (20%), Positives = 146/397 (36%), Gaps = 99/397 (24%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y ++ + G ++E F++ + M+ +EP I+ +N++L
Sbjct: 250 PNRITYNTLIDGYCKVGQLEEAFNIRERMKV---------------ENVEPTIITFNSLL 294
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN----LVYEFFRK--- 117
N R + E A VL++++ G P TY + + L CG + L E RK
Sbjct: 295 NGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQ 354
Query: 118 ------------------------VQKSYIPNALA-----YKVLVNTLWREGKTDEAVSA 148
V K ++ N LA + +VN + G ++A +
Sbjct: 355 ILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTT 414
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEA---------------------------- 180
+E ME G+ + Y L + C EEA
Sbjct: 415 IEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGR 474
Query: 181 -------LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
++++ K KP V+SY LI NI A I M PN
Sbjct: 475 SCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQI 534
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N+++ G ++A + F EM + RE ++P + T+N +++ + +
Sbjct: 535 YNMLIDGSCIAGKLKDAFRFFDEM------VARE------IVPTLVTYNILINGLCKKGK 582
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ E + + GL F+ + +I S AG V+
Sbjct: 583 VMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQ 619
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 83/390 (21%), Positives = 158/390 (40%), Gaps = 43/390 (11%)
Query: 16 TLGQAGHIKELFDVIDSMRSLPKKKFKTGT-----LERWDPRLEPDIVVYNAVLNACVRR 70
TL Q G + +I SM LPK F + + ++P + + +L+ C
Sbjct: 69 TLLQQGRTETARRLIRSML-LPKSPFSSPSHLYTLFSLSSTPMKP--LFSDMLLSICSES 125
Query: 71 KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAY 129
K + + +K+ G PS + L +E +++ +Y + F ++ +S + P+ Y
Sbjct: 126 KMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMY 185
Query: 130 KVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK 189
+ + G A+ + M+R G+ +Y + LC + ++A D++
Sbjct: 186 GKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLD 245
Query: 190 VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEE 248
P ++Y LI G ++ A I +MK P ++T N ++ + EE
Sbjct: 246 RRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEE 305
Query: 249 AMKLFQEM------------------------AEDSNHINREYDKKGLVIPDIYTFNTML 284
A ++ +EM + S ++ E +KG+ I D YT + +L
Sbjct: 306 AQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILD-YTCSILL 364
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA----R 340
+A E + E V K+ L +GL ++ + G + T E + R
Sbjct: 365 NALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLR 424
Query: 341 ADRITPPALIKERFCNRLENKDYGSAISCL 370
+ +T +L+K +FC E K+ A C+
Sbjct: 425 PNHVTYNSLVK-KFC---EMKNMEEAEKCI 450
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/305 (20%), Positives = 126/305 (41%), Gaps = 27/305 (8%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + L PD +Y + A V+ + A ++ +K+ G P Y +V+ +
Sbjct: 172 EIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEK 231
Query: 107 KYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ + F + + + PN + Y L++ + G+ +EA + E M+ + + +
Sbjct: 232 RMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFN 291
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKN 224
L LC A EEA ++++ P +YT L L GN+ + + + ++
Sbjct: 292 SLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRK 351
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS------------------NHINRE 266
TC+I++ A + G E+A ++ ++ E+ IN+
Sbjct: 352 GVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKA 411
Query: 267 Y------DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMIL 320
Y + GL P+ T+N+++ K ++ E K+M+ G+ N + + +I
Sbjct: 412 YTTIEKMEAVGLR-PNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLID 470
Query: 321 DASRA 325
R+
Sbjct: 471 GYGRS 475
>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Glycine max]
Length = 725
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 92/404 (22%), Positives = 158/404 (39%), Gaps = 49/404 (12%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTLERWDPRL----- 53
M PD + + L +AG I E ++D M R G L R+
Sbjct: 269 MCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDE 328
Query: 54 ---------EPDIVVYNAVLNACVRRKQWEGAFWVL-QQLKQQGQKPSATTYGLVMEVML 103
P+ V+YN +++ V ++E A +L + G +P A T+ ++++ ++
Sbjct: 329 ARALLNKIPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLV 388
Query: 104 ACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G E + V K + PN + Y +L+N ++G+ +EA V M +G+ +
Sbjct: 389 KKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTV 448
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y L LC G EEAL ++ KP + ++ LI + ++ A +++ M
Sbjct: 449 GYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDM 508
Query: 223 -KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM------------------------A 257
N VT N +V A+L ++A KL EM
Sbjct: 509 FLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAV 568
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
E + E KG + P I + N ++ + +D + M+H GL + +
Sbjct: 569 EKGLGLFEEMLGKG-IFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNS 627
Query: 318 MILDASRAGKVELLEITWEHL----ARADRITPPALIKERFCNR 357
+I + G V+ + L R D IT LI R C+
Sbjct: 628 LINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLIS-RHCHE 670
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 96/233 (41%), Gaps = 50/233 (21%)
Query: 90 PSATTYGLVMEVMLA--CGKY--NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEA 145
P+ +Y +V+++++ C + N+ Y+ + + P + V++ L + D A
Sbjct: 168 PTFKSYNVVLDILVDGDCPRVAPNVFYDM---LSRGVSPTVYTFGVVMKALCMVSEVDSA 224
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
S + DM + G V ++ +Y L LC + EAL ++ + + +P V ++ +I
Sbjct: 225 CSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHG 284
Query: 206 CLDSGNIQNAAYIFNQ----------------MKNFC----------------SPNLVTC 233
+G I AA + ++ M C +PN V
Sbjct: 285 LCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPNPNTVLY 344
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
N ++ Y+ G FEEA L +N + Y+ PD YTFN M+D
Sbjct: 345 NTLISGYVASGRFEEAKDLLY-----NNMVIAGYE------PDAYTFNIMIDG 386
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 107/254 (42%), Gaps = 22/254 (8%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLER----- 48
+TV Y + L + G+I+E + M SL K +E
Sbjct: 446 NTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLY 505
Query: 49 WDPRLEPDI---VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
D LE I V YN +++A + R + AF ++ ++ +G TY +++ +
Sbjct: 506 HDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKT 565
Query: 106 GKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G F + + K P ++ +L++ L R GK ++A+ ++DM RG+ Y
Sbjct: 566 GAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTY 625
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA-YIFNQMK 223
L LC G +EA +K+ +P ++Y LI G +A ++ +
Sbjct: 626 NSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFNDACLLLYKGVD 685
Query: 224 NFCSPNLVTCNIMV 237
+ PN VT +I++
Sbjct: 686 SGFIPNEVTWSILI 699
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN-LV 111
L PDIV YN+++N + + A + +L+ +G +P A TY ++ G +N
Sbjct: 618 LTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFNDAC 677
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWRE 139
++ V +IPN + + +L+N + ++
Sbjct: 678 LLLYKGVDSGFIPNEVTWSILINYIVKK 705
>gi|255585033|ref|XP_002533225.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526957|gb|EEF29157.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 605
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 126/304 (41%), Gaps = 31/304 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + +++ +AG + E F ++D M +K K + V N +L
Sbjct: 256 PDCVTFNTLSNGYCKAGRLSEAFRMMDEM---SRKGLKMNS------------VTLNTIL 300
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ ++ + A+ +L ++G +YG ++ GK E +K IP
Sbjct: 301 HTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKVGKSXXWDEM---KEKEIIP 357
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ + Y ++ L R GKTD+++ ++ G+V Y + C G+ ++A
Sbjct: 358 SIITYGTMIGGLCRSGKTDQSIDKCNELLESGLVPDQTTYNTIILGYCREGQVDKAFHFR 417
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLEH 243
+K+ K + KP + + L++ G + A +F + + + VT N ++ E
Sbjct: 418 NKMVKKSFKPDLFTCNILVRGLCTEGMLDKALKLFKTWISKGKAIDAVTFNTIISGLCEE 477
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G FEEA L EM E + PD YT N +L A A R + E +
Sbjct: 478 GRFEEAFDLLAEMEEKK------------LGPDCYTHNAILSALADAGRMKEAEEFMSGI 525
Query: 304 LHHG 307
+ G
Sbjct: 526 VEQG 529
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 111/262 (42%), Gaps = 14/262 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+E + +N ++ C + A ++ ++K P +Y +++V+ GK N
Sbjct: 44 VEVNTNTFNILICGCCIENKLSEAIGLIGKMKHFSCFPDNVSYNTILDVLCKKGKLNEAR 103
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ ++ + + PN + +LV+ + G EA ++ M R ++ Y L L
Sbjct: 104 DLLLDMKNNGLFPNRNTFNILVSGYCKLGWLKEAAEVIDIMARNNVLPDVRTYTTLIGGL 163
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
C GK +EA D++ + P VV+Y LI C + + + ++M+ PN
Sbjct: 164 CKDGKIDEAFRLRDEMENLKLLPHVVTYNMLINGCFECSSSLKGFELIDEMEGKGVKPNA 223
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N++VK Y++ G + A ++M E PD TFNT+ +
Sbjct: 224 VTYNVVVKWYVKEGKMDNAGNELRKMEESG------------FSPDCVTFNTLSNGYCKA 271
Query: 291 KRWDDLELVYKRMLHHGLHFNA 312
R + + M GL N+
Sbjct: 272 GRLSEAFRMMDEMSRKGLKMNS 293
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/350 (20%), Positives = 137/350 (39%), Gaps = 38/350 (10%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKKF---------KTGTLERW 49
S +PD V+Y +I L + G + E D++ M++ P + K G L+
Sbjct: 78 SCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLFPNRNTFNILVSGYCKLGWLKEA 137
Query: 50 DPRLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
++ PD+ Y ++ + + + AF + +++ P TY +++
Sbjct: 138 AEVIDIMARNNVLPDVRTYTTLIGGLCKDGKIDEAFRLRDEMENLKLLPHVVTYNMLING 197
Query: 102 MLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
C +E +++ K PNA+ Y V+V +EGK D A + + ME G
Sbjct: 198 CFECSSSLKGFELIDEMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPD 257
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
+ L+ C AG+ EA MD++ + K V+ ++ + +A + +
Sbjct: 258 CVTFNTLSNGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLS 317
Query: 221 QM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
K + V+ ++ Y + G + EM E +IP I T
Sbjct: 318 SASKRGYFVDEVSYGTLIMGYFKVG----KSXXWDEMKEKE------------IIPSIIT 361
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ TM+ + D +L GL + + +IL R G+V+
Sbjct: 362 YGTMIGGLCRSGKTDQSIDKCNELLESGLVPDQTTYNTIILGYCREGQVD 411
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 96/244 (39%), Gaps = 29/244 (11%)
Query: 41 FKTGTLERWDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG 96
FK G WD E P I+ Y ++ R + + + +L + G P TTY
Sbjct: 339 FKVGKSXXWDEMKEKEIIPSIITYGTMIGGLCRSGKTDQSIDKCNELLESGLVPDQTTYN 398
Query: 97 LVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERR 155
++ G+ + + F K V+KS+ P+ +LV L EG D+A+ + +
Sbjct: 399 TIILGYCREGQVDKAFHFRNKMVKKSFKPDLFTCNILVRGLCTEGMLDKALKLFKTWISK 458
Query: 156 GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA 215
G A + + LC G+ EEA + ++ + P ++ ++ A D+G ++ A
Sbjct: 459 GKAIDAVTFNTIISGLCEEGRFEEAFDLLAEMEEKKLGPDCYTHNAILSALADAGRMKEA 518
Query: 216 ----AYIFNQMK--------------------NFCSPNLVTCNIMVKAYLEHGLFEEAMK 251
+ I Q K PN V + + G +++AM
Sbjct: 519 EEFMSGIVEQGKLQDQTISLNKRKTESSSETSQESDPNSVAFSEQINELCTQGKYKDAMH 578
Query: 252 LFQE 255
+ QE
Sbjct: 579 MIQE 582
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 68/166 (40%), Gaps = 26/166 (15%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V + +I L + G +E FD++ M + +L PD +NA+L+
Sbjct: 463 DAVTFNTIISGLCEEGRFEEAFDLLAEME---------------EKKLGPDCYTHNAILS 507
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPN 125
A + + A + + +QG+ T ++ K + PN
Sbjct: 508 ALADAGRMKEAEEFMSGIVEQGKLQDQT---------ISLNKRKTESSSETSQESD--PN 556
Query: 126 ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++A+ +N L +GK +A+ +++ ++GI+ + Y L L
Sbjct: 557 SVAFSEQINELCTQGKYKDAMHMIQESTQKGIILHKSTYISLMEGL 602
>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74850, chloroplastic; AltName: Full=Protein PLASTID
TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
Length = 862
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/362 (21%), Positives = 142/362 (39%), Gaps = 75/362 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + T G+ ++++ D++ M S G+L PDI YN +L
Sbjct: 280 PDLTTYSHLVETFGKLRRLEKVCDLLGEMAS-------GGSL--------PDITSYNVLL 324
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
A + + A V Q++ G P+A TY +++ + G+Y+ V + F +++ S
Sbjct: 325 EAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTD 384
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI-------------------------- 157
P+A Y +L+ G E V+ DM I
Sbjct: 385 PDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKI 444
Query: 158 ---------VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
V S+ Y + A EEAL+ + + +V + P + ++ L+ +
Sbjct: 445 LQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFAR 504
Query: 209 SGNIQNAAYIFNQMKNFCSP-NLVTCNIMVKAYLEHGLFEEAMKLFQEMAE--------- 258
G ++ + I +++ + P N T N ++AY + G FEEA+K + +M +
Sbjct: 505 GGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERT 564
Query: 259 --------------DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
D E K ++P I + ML +RWDD+ + + ML
Sbjct: 565 LEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEML 624
Query: 305 HH 306
+
Sbjct: 625 SN 626
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/328 (21%), Positives = 139/328 (42%), Gaps = 36/328 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y + LG+ G + + +V D M S + + Y A++
Sbjct: 139 PNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSR---------------SVFSYTALI 183
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE----FFRKVQK 120
NA R ++E + +L ++K + PS TY V+ AC + L +E F +++
Sbjct: 184 NAYGRNGRYETSLELLDRMKNEKISPSILTYNTVIN---ACARGGLDWEGLLGLFAEMRH 240
Query: 121 SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
I P+ + Y L++ G DEA M GIV Y L + E+
Sbjct: 241 EGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEK 300
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVK 238
+ ++ + P + SY L++A SG+I+ A +F+QM+ C+PN T ++++
Sbjct: 301 VCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLN 360
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ + G +++ +LF EM + PD T+N +++ + ++
Sbjct: 361 LFGQSGRYDDVRQLFLEMKSSNTD------------PDAATYNILIEVFGEGGYFKEVVT 408
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAG 326
++ M+ + + + + +I + G
Sbjct: 409 LFHDMVEENIEPDMETYEGIIFACGKGG 436
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 126/314 (40%), Gaps = 49/314 (15%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM---------- 102
++PDIV YN +L+AC R + A V + + G P TTY ++E
Sbjct: 243 IQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVC 302
Query: 103 -----LACG-------KYNLVYE-------------FFRKVQKSY-IPNALAYKVLVNTL 136
+A G YN++ E F ++Q + PNA Y VL+N
Sbjct: 303 DLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLF 362
Query: 137 WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV 196
+ G+ D+ +M+ AA Y L G +E + + + +P +
Sbjct: 363 GQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDM 422
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
+Y G+I AC G ++A I M N P+ +++A+ + L+EEA+ F
Sbjct: 423 ETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNT 482
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
M E ++ P I TF+++L + A + E + R++ G+ N
Sbjct: 483 MHEVGSN------------PSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTF 530
Query: 316 LRMILDASRAGKVE 329
I + GK E
Sbjct: 531 NAQIEAYKQGGKFE 544
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 109/254 (42%), Gaps = 27/254 (10%)
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY--IPNALAYKVLVNTLWREGKTDEAV 146
K S + LV + G + F+ +Q+ PN Y ++++ L REG D+ +
Sbjct: 102 KLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCL 161
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
++M +G+ S Y L G+ E +L +D++ P +++Y +I AC
Sbjct: 162 EVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINAC 221
Query: 207 LDSG-NIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS---- 260
G + + +F +M++ P++VT N ++ A GL +EA +F+ M +
Sbjct: 222 ARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPD 281
Query: 261 ----NHINREYDK---------------KGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+H+ + K G +PDI ++N +L+A A + V+
Sbjct: 282 LTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFH 341
Query: 302 RMLHHGLHFNAKRH 315
+M G NA +
Sbjct: 342 QMQAAGCTPNANTY 355
>gi|357144696|ref|XP_003573383.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like [Brachypodium distachyon]
Length = 606
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 147/334 (44%), Gaps = 28/334 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN---LV 111
P ++ A++ A R KQ+ A V +++ G +PS TY ++++ ++ KY +
Sbjct: 174 PTVISQTALMEAYGRAKQYRKAEAVFHRMQTSGPEPSPITYQIILKSLVEGDKYKEAEAI 233
Query: 112 YEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+E ++++ P+ + +++ + G +A M RGI S + L
Sbjct: 234 FEDLLSEKRTFFKPDQKMFHMMIYMYKKSGDYAQARKLFAQMSERGIPQSTVTFNSL--- 290
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPN 229
+ G +E D++ + KP VVSY+ LI+A + + A+ +F +M + P
Sbjct: 291 MSFEGDYKEVSSIYDQMQRAGLKPDVVSYSLLIKAYGKARREEEASAVFEEMLDAGIRPT 350
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+ NI++ A+ GL EEA +F+ M ++ V PD+ ++ TML A
Sbjct: 351 RKSYNILLDAFAISGLVEEAQTVFKTM------------RRHRVEPDLCSYTTMLLAYVN 398
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPAL 349
D E ++R+ GL N + ++ S+ VE + +E + R + P
Sbjct: 399 ASDMDGAEKFFRRIKEDGLRPNVVVYGTLMKGYSKLDNVEKVMRVYERM-RMQGVEPNQT 457
Query: 350 IKERFCNRLE----NKDYGSAISCLVSHPVSGSP 379
I F ++ N D+G+A+ G P
Sbjct: 458 I---FTTIMDVHGRNSDFGNAVIWFNEMETRGYP 488
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 114/254 (44%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P + Y+ I +L + KE + + + S + FK PD +++ ++
Sbjct: 209 PSPITYQIILKSLVEGDKYKEAEAIFEDLLSEKRTFFK------------PDQKMFHMMI 256
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + A + Q+ ++G S T+ +M G Y V + ++Q++ +
Sbjct: 257 YMYKKSGDYAQARKLFAQMSERGIPQSTVTFNSLMSFE---GDYKEVSSIYDQMQRAGLK 313
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++Y +L+ + + +EA + E+M GI + Y L +G EEA
Sbjct: 314 PDVVSYSLLIKAYGKARREEEASAVFEEMLDAGIRPTRKSYNILLDAFAISGLVEEAQTV 373
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ + +P + SYT ++ A +++ ++ A F ++K + PN+V ++K Y +
Sbjct: 374 FKTMRRHRVEPDLCSYTTMLLAYVNASDMDGAEKFFRRIKEDGLRPNVVVYGTLMKGYSK 433
Query: 243 HGLFEEAMKLFQEM 256
E+ M++++ M
Sbjct: 434 LDNVEKVMRVYERM 447
>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Cucumis sativus]
Length = 904
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/363 (20%), Positives = 151/363 (41%), Gaps = 34/363 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR--SLPKKKF---------KTGTLERW---- 49
P V+Y I LG+ G + E + M+ ++P K G LE
Sbjct: 373 PSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVR 432
Query: 50 ----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
D L P+++ N +++ + ++ + A + + L + +P A TY ++E +
Sbjct: 433 DAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRH 492
Query: 106 GKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G+ + Y+ + + + + IPNA+ Y L+ ++ G+ ++ +M R G L
Sbjct: 493 GRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLL 552
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK- 223
C+ AG+ E+ +I + P SYT LI + +G A +F MK
Sbjct: 553 NTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKE 612
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
C + N ++ + + G +A +L +EM + P + T+ ++
Sbjct: 613 QGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHE------------PTVVTYGSV 660
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADR 343
+D A R D+ ++++ G+ N + +I + G+++ + E L +
Sbjct: 661 IDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKG- 719
Query: 344 ITP 346
+TP
Sbjct: 720 LTP 722
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/360 (21%), Positives = 147/360 (40%), Gaps = 69/360 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDP- 51
PD V Y S+ LG+ G + E + + + M SL + FK G E
Sbjct: 477 PDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKI 536
Query: 52 -----RL--EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
RL PD+++ N ++ + + E + Q++K G P A +Y +++ ++
Sbjct: 537 YNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVK 596
Query: 105 CGKYNLVYEFF-------------------------RKVQKSYI-----------PNALA 128
G + YE F KV K+Y P +
Sbjct: 597 AGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVT 656
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
Y +++ L + + DEA E+ + +GI + +Y L G+ +EA + M+++
Sbjct: 657 YGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELM 716
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFE 247
+ P V ++ L+ A + + I A F MK+ C+PN +T +I++ + F
Sbjct: 717 QKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFN 776
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
+A +QEM K+G P+++T+ TM+ A + + ++++ G
Sbjct: 777 KAFVFWQEM-----------QKQGFK-PNVFTYTTMISGLAKAGNIVEADTLFEKFKEKG 824
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/377 (19%), Positives = 155/377 (41%), Gaps = 44/377 (11%)
Query: 13 IAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQ 72
I ++ ++ ++E F I +MR L + P Y ++ A +
Sbjct: 171 IVLSFIKSRKLREAFTFIQTMRKL---------------KFRPAFSAYTNLIGALSTSRD 215
Query: 73 WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKV 131
+ + QQ+++ G + + ++ V G+ + +++ + + P+ + Y V
Sbjct: 216 SDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNV 275
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA 191
++ + GK D A +M+ G+V Y + LC A + EA+ + + +
Sbjct: 276 CIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNK 335
Query: 192 NKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCSPNLVTCNIMVKAYLEHGLFEEAM 250
P +Y +I +G ++A + Q + C P++V+ N ++ G +EA+
Sbjct: 336 QVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEAL 395
Query: 251 KLFQEMAED----------------------SNHINREYDKKGLVIPDIYTFNTMLDACA 288
K F+EM +D + + R+ K + P++ T N M+D
Sbjct: 396 KKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLC 455
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI---- 344
+R DD +++ + H +A + +I R G+V+ +E + A++I
Sbjct: 456 KAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAV 515
Query: 345 TPPALIKERF-CNRLEN 360
+LI+ F C R E+
Sbjct: 516 VYTSLIRNFFKCGRKED 532
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/325 (19%), Positives = 137/325 (42%), Gaps = 34/325 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKE---LFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNA 62
D V Y S+ L +A + E LF+ +D + +P YN
Sbjct: 304 DDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCA------------------YAYNT 345
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY 122
++ ++E A+ +L++ +++G PS +Y ++ + G+ + + F +++K
Sbjct: 346 MIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDA 405
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
IPN Y ++++ L + GK + A+ + M+ G+ + + LC A + ++A
Sbjct: 406 IPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACS 465
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYL 241
+ + +P V+Y LI+ G + A ++ QM + PN V +++ +
Sbjct: 466 IFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFF 525
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G E+ K++ EM PD+ NT +D + +++
Sbjct: 526 KCGRKEDGHKIYNEMLRLGCS------------PDLLLLNTYMDCVFKAGEIEKGRALFQ 573
Query: 302 RMLHHGLHFNAKRHLRMILDASRAG 326
+ + G +A+ + +I +AG
Sbjct: 574 EIKNLGFIPDARSYTILIHGLVKAG 598
Score = 38.5 bits (88), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 43/218 (19%), Positives = 85/218 (38%), Gaps = 13/218 (5%)
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
AY L+ + R K + +E+M G S ++ + K EA + +
Sbjct: 132 AYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTM 191
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEHGLF 246
K+ +P +YT LI A S + +F QM+ + N+ +++ + G
Sbjct: 192 RKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRV 251
Query: 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306
+ A+ L EM +S + PD+ +N +D + D + M +
Sbjct: 252 DAALSLLDEMKSNS------------LEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKAN 299
Query: 307 GLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI 344
GL + + MI +A ++ +EH+ + ++
Sbjct: 300 GLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQV 337
>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 867
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/328 (21%), Positives = 139/328 (42%), Gaps = 30/328 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ G KE K FK T E L PDIV +N+++
Sbjct: 340 PDEVTYTAMIHGYSCLGRWKE-----------AAKMFKEMTREG----LIPDIVTFNSLM 384
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
++ + K+ + A + + +G KP +Y +++ G++ + F + +
Sbjct: 385 DSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIV 444
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
++ + +L+N + G DEA+ +M +G+ + Y + LC G+ +A+ +
Sbjct: 445 ADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEK 504
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
+ ++ + KP V Y LIQ G++ A + ++M + PN+ + ++ +
Sbjct: 505 LSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLC 564
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G A +F + HI PDI+TFN+++D + D V
Sbjct: 565 NEGRVMNAQDVFNLVI----HIGDR--------PDIFTFNSLIDGYCLVGKMDKAFGVLD 612
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVE 329
M+ G + + +I ++G+++
Sbjct: 613 AMVSAGTEPDVVTYSTLINGYFKSGRID 640
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 124/260 (47%), Gaps = 16/260 (6%)
Query: 53 LEPDIVVYNAVLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
L D +V N L C ++ E +L ++ + G P A +Y V++ + +
Sbjct: 196 LRTDGIVTNTFLKCLCYAKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEA 255
Query: 112 YEFFRKVQKS--YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
+ ++ K P+ ++Y ++++ L+ EG+ +A + +M ++G+V + Y +
Sbjct: 256 LDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVH 315
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSP 228
LC A ++A + + ++ + +P V+YT +I G + AA +F +M + P
Sbjct: 316 ALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIP 375
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
++VT N ++ + +H +EA ++F +A + PDI +++ +L A
Sbjct: 376 DIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHK------------PDIISYSILLHGYA 423
Query: 289 AEKRWDDLELVYKRMLHHGL 308
E R+ D+ ++ M +G+
Sbjct: 424 TEGRFVDMNNLFHSMTDNGI 443
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 125/316 (39%), Gaps = 30/316 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P++V Y V+ A R + A L Q+ G KP+ Y +++ G
Sbjct: 478 VSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAK 537
Query: 113 EFFRKVQKSYIP--NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
E ++ IP N + ++++L EG+ A + G + L
Sbjct: 538 ELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDG 597
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--- 227
C GK ++A +D + +P VV+Y+ LI SG I + +F +M C
Sbjct: 598 YCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREM--LCKRVK 655
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS-----------------NHINRE---- 266
P VT ++++ G A K+F EM E N+ E
Sbjct: 656 PTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITL 715
Query: 267 YDKKGLVIP--DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASR 324
+ K G + +I NTM+ A KR ++ ++ + GL NA + MI++ +
Sbjct: 716 FHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFASVSASGLVPNASTYGVMIINLLK 775
Query: 325 AGKVELLEITWEHLAR 340
G VE +I + + +
Sbjct: 776 EGSVEEADIMFSSMEK 791
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 107/242 (44%), Gaps = 17/242 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + S+ G + + F V+D+M S GT EPD+V Y+ ++
Sbjct: 586 PDIFTFNSLIDGYCLVGKMDKAFGVLDAMVS-------AGT--------EPDVVTYSTLI 630
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
N + + + + +++ + KP+ TY LV++ + G+ + + F ++ +S
Sbjct: 631 NGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTA 690
Query: 125 NALA-YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+++ Y +++ L R TDEA++ + + A+ + L + EEA
Sbjct: 691 MSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDL 750
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ P +Y +I L G+++ A +F+ M K C+P+ N +++ L+
Sbjct: 751 FASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLNDIIRMLLQ 810
Query: 243 HG 244
G
Sbjct: 811 KG 812
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 92/202 (45%), Gaps = 15/202 (7%)
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL-MQMDKI 187
Y +L++ R + D + + R G+ + +CLC A + +EAL M + ++
Sbjct: 168 YGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKRTDEALSMLLHRM 227
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK--NFCSPNLVTCNIMVKAYLEHGL 245
++ P SY +I++ Q A + +M + CSP++V+ +++ G
Sbjct: 228 SELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGE 287
Query: 246 FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
+A LF EM + KG V+P++ T+N+++ A + D ELV ++M
Sbjct: 288 ISKACNLFNEMVQ-----------KG-VVPNVVTYNSIVHALCKARAMDKAELVLRQMFD 335
Query: 306 HGLHFNAKRHLRMILDASRAGK 327
+ + + + MI S G+
Sbjct: 336 NSIQPDEVTYTAMIHGYSCLGR 357
>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
Length = 768
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 136/302 (45%), Gaps = 18/302 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V Y V++ + + + A V Q + +G +P+ TY ++ L+ GK+ V +
Sbjct: 200 PNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQM 259
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++ + P+ + Y VL++ L + G+ EA + + + R+GI +Y L +
Sbjct: 260 LQEMSTHGLQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYAT 319
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVT 232
G E +D + + P + + A I A +IF++M+ + SP +V
Sbjct: 320 EGALSEMHSFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVN 379
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
++ A + G ++A+ F +M + V PDI+ F++++ +
Sbjct: 380 YGALIDALCKLGRVDDAVLKFNQMINEG------------VTPDIFVFSSLVYGLCTVDK 427
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPA 348
W+ E ++ +L G+ NA ++ + R G+V L+++ R D I+
Sbjct: 428 WEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNT 487
Query: 349 LI 350
L+
Sbjct: 488 LV 489
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 120/256 (46%), Gaps = 14/256 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLV 111
+ PD ++N + NA ++ + A + +++QQ P YG +++ + G+ + V
Sbjct: 338 VSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAV 397
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+F + + + P+ + LV L K ++A ++ +GI +AA + L L
Sbjct: 398 LKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNL 457
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C G+ EA +D + +V +P V+SY L+ +G I AA + + M + P+
Sbjct: 458 CREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDE 517
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T N ++ Y + ++A LF+EM KGL P + T+NT+L
Sbjct: 518 FTYNTLLHGYCKARRIDDAYSLFREML-----------MKGLT-PGVVTYNTILHGLFQI 565
Query: 291 KRWDDLELVYKRMLHH 306
R+ + + +Y M+++
Sbjct: 566 GRFCEAKELYLNMINN 581
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/293 (21%), Positives = 118/293 (40%), Gaps = 49/293 (16%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD V+Y +L+ + + A + L ++G KP T YG+++ G + ++
Sbjct: 268 LQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMH 327
Query: 113 EFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F V+ P+ + ++ N ++ DEA+ + M ++ + Y L L
Sbjct: 328 SFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDAL 387
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA----------------CLDSGNIQNA 215
C G+ ++A+++ +++ P + ++ L+ LD G NA
Sbjct: 388 CKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNA 447
Query: 216 AYIFNQMKNFC--------------------SPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
A+ M N C P++++ N +V + G +EA KL
Sbjct: 448 AFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDV 507
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
M + PD +T+NT+L +R DD +++ ML GL
Sbjct: 508 MVSIG------------LKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGL 548
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 123/288 (42%), Gaps = 33/288 (11%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D + P+ Y +++ + +W+ +LQ++ G +P Y ++++ + G+
Sbjct: 230 DKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKNGRCT 289
Query: 110 LVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
F ++K P+ Y +L++ EG E S ++ M R G+ ++ +
Sbjct: 290 EARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDHHIFNIMF 349
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP 228
+EA+ DK+ + P VV+Y LI A G + +A FNQM N
Sbjct: 350 NAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMIN---- 405
Query: 229 NLVTCNIMVKAYLEHGL-----FEEAMKLFQEMAEDSNHINREYD--------KKGLVI- 274
VT +I V + L +GL +E+A KLF E+ + +N + ++G V+
Sbjct: 406 EGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVME 465
Query: 275 --------------PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
PD+ ++NT++D R D+ + M+ GL
Sbjct: 466 AQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGL 513
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 114/284 (40%), Gaps = 29/284 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + + + I E + D MR ++W L P +V Y A++
Sbjct: 340 PDHHIFNIMFNAYAKKAMIDEAMHIFDKMR------------QQW---LSPGVVNYGALI 384
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+A + + + A Q+ +G P + ++ + K+ + F +V I
Sbjct: 385 DALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIR 444
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
NA + +L+ L REG+ EA ++ M R + Y L C G+ +EA
Sbjct: 445 LNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKL 504
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+D + + KP +Y L+ + I +A +F +M +P +VT N ++ +
Sbjct: 505 LDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQ 564
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
G F EA +L+ M + DIYT+ +L+
Sbjct: 565 IGRFCEAKELYLNMINNRRKC------------DIYTYTIILNG 596
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 116/296 (39%), Gaps = 49/296 (16%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDI V+++++ +WE A + ++ QG + +A + ++M + G+
Sbjct: 410 PDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRL 469
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ + + P+ ++Y LV+ G+ DEA ++ M G+ Y L C
Sbjct: 470 IDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCK 529
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--------- 224
A + ++A ++ P VV+Y ++ G A ++ M N
Sbjct: 530 ARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRKCDIYT 589
Query: 225 -----------------------FCSPNL----VTCNIMVKAYLEHGLFEEAMKLFQEMA 257
CS +L T NIM+ A L+ G E+AM LF ++
Sbjct: 590 YTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFTINIMIGALLKGGRKEDAMDLFATIS 649
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK 313
GLV PD+ T+ + + E ++L+ ++ M +G N++
Sbjct: 650 -----------AYGLV-PDVETYRLIAENLIKEGSLEELDELFSAMEENGTAPNSR 693
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/278 (19%), Positives = 95/278 (34%), Gaps = 50/278 (17%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG---QKPSATTYGLVMEVMLACGKYNLVY 112
+++ YN +L K+ E A ++ + G P+ TY V++ + +
Sbjct: 163 NVISYNILLKGLCNEKRAEEALELMHMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAK 222
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F+ + K PN Y L++ GK E V +++M G+ +Y L L
Sbjct: 223 GVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYL 282
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV 231
C G+C EA D + + KP V Y
Sbjct: 283 CKNGRCTEARNIFDSLIRKGIKPHVTIY-------------------------------- 310
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
I++ Y G E M + V PD + FN M +A A +
Sbjct: 311 --GILLHGYATEGALSEMHSFLDLMVRNG------------VSPDHHIFNIMFNAYAKKA 356
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
D+ ++ +M L + +I + G+V+
Sbjct: 357 MIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVD 394
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 16/198 (8%)
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVA-NKPLVVSYTGLIQACLDSGNIQNAAYI 218
S+ Y L C C G+ + I K + V + L++ D+ + A I
Sbjct: 91 SSCTYTILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTVIFGQLLKGLCDAKRVDEATDI 150
Query: 219 F-NQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
+M F C+ N+++ NI++K EEA++L MA+D + G P+
Sbjct: 151 LLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALELMHMMADDGD---------GSHTPN 201
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK----VELLE 332
+ T+ T++D + D + V++ M+ G+ N + +I GK V++L+
Sbjct: 202 VVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQ 261
Query: 333 ITWEHLARADRITPPALI 350
H + D + L+
Sbjct: 262 EMSTHGLQPDCVIYAVLL 279
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 70/187 (37%), Gaps = 22/187 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHI---KELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
P V Y +I L Q G KEL+ L + R + DI Y
Sbjct: 550 PGVVTYNTILHGLFQIGRFCEAKELY------------------LNMINNRRKCDIYTYT 591
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK- 120
+LN R + AF + Q L + + T +++ +L G+ + F +
Sbjct: 592 IILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFTINIMIGALLKGGRKEDAMDLFATISAY 651
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+P+ Y+++ L +EG +E ME G ++ + L R L G A
Sbjct: 652 GLVPDVETYRLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDIGRA 711
Query: 181 LMQMDKI 187
+ + K+
Sbjct: 712 GVYLSKL 718
>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 918
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/354 (21%), Positives = 144/354 (40%), Gaps = 46/354 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM---RSLPKKKFKTGTLERWDPRLEPDIVVYN 61
P+TV Y ++ L +G + E FD+I M LP TG P I + +
Sbjct: 283 PNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTG----------PIIALCD 332
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
C +E A+ + +K +G +P+ TY ++ + G + F ++ +
Sbjct: 333 M---GC-----YEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRD 384
Query: 122 YI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ PN + Y L+N L + A + M R G + Y ++ + C G ++A
Sbjct: 385 GVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKA 444
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKA 239
++ M+ + + + +V+Y +I+ DSGN +A I + M++ C P+ + ++
Sbjct: 445 MLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICG 504
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINR-----------------------EYDKKGLVIPD 276
+ + E A LF EM +D N E+ K+ P+
Sbjct: 505 FCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 564
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ T+N ++ + + E + K M+ G+ N + MI + G L
Sbjct: 565 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSL 618
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/362 (21%), Positives = 147/362 (40%), Gaps = 40/362 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y ++ L + G++ + ++ KK F++ + PD Y +++
Sbjct: 213 PNLLIYNAVINALCKDGNVAD-------AETIMKKVFES--------EMSPDTFTYTSMI 257
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
R+ + A V Q+ ++G +P+ TY ++ + G+ N ++ R+ + +
Sbjct: 258 LGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGIL 317
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P A + L G ++A DM+ +G + Y L LC +G + A+
Sbjct: 318 PTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGL 377
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + P V+Y LI +++ I+ A + N M +N CSPN+VT N M+K Y
Sbjct: 378 FHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCI 437
Query: 243 HGLFEEAMKLFQEMAEDS--------NHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
G ++AM + M + N I + Y G + + M D W
Sbjct: 438 LGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 497
Query: 295 DLELV---------------YKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
EL+ + M+ GL N + +I + K++ EH+
Sbjct: 498 YTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMK 557
Query: 340 RA 341
R+
Sbjct: 558 RS 559
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 126/302 (41%), Gaps = 29/302 (9%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG---KYNLV 111
P+ V YNA++N V ++ + AF VL + + G P+ TY +++ G K LV
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+Q+ + N + Y ++ G T A+ ++ M G Y +L
Sbjct: 448 MN--NMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 505
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C K E A +++ P V+YT LI + A + MK + C PN+
Sbjct: 506 CKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNV 565
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDS---NHINREYDKKGLV-------------- 273
T N+++ + F A +L + M E+ N + GL
Sbjct: 566 QTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNK 625
Query: 274 ------IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
+P++ T+++++ A E + ++ E ++ + HGL + +++MI +GK
Sbjct: 626 MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGK 685
Query: 328 VE 329
VE
Sbjct: 686 VE 687
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 78/152 (51%), Gaps = 1/152 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++ YN +++ ++ + GA + + + ++G P+ TY +++ + G +L E
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F K +++ +PN L Y L+ L +EGK +EA + ++ER G++ Y +
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 682
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+GK E A + ++ K +P + +Y LI+
Sbjct: 683 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKG 714
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 103/253 (40%), Gaps = 17/253 (6%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+ V Y +I +G+ ++D MR D +PD Y ++
Sbjct: 459 NLVTYNTIIKGYCDSGNTTSALRILDLMR---------------DGGCKPDEWSYTELIC 503
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ + E AF + ++ G P+ TY +++ K + +++S P
Sbjct: 504 GFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRP 563
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N Y VL++ L ++ A + M GI + Y + LC G AL
Sbjct: 564 NVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMF 623
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
+K+ + P +++Y+ LI+A G ++ A +F ++ ++ P+ +T M++AY+
Sbjct: 624 NKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMS 683
Query: 244 GLFEEAMKLFQEM 256
G E A M
Sbjct: 684 GKVEHAFNFLGRM 696
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 105/294 (35%), Gaps = 49/294 (16%)
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE-FFRKVQKS 121
++ +C ++ L L Q G + Y ++ + G V + + R + +
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210
Query: 122 YIPNALAYKVLVNTLWREGKT-----------------------------------DEAV 146
PN L Y ++N L ++G D A+
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
M + G + Y L LC +G+ EA + ++ P + TG I A
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIAL 330
Query: 207 LDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
D G ++A +F MKN C PN+ T ++ GL + A+ LF M+ D
Sbjct: 331 CDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDG----- 385
Query: 266 EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
V P+ T+N +++ +R +V M +G N + MI
Sbjct: 386 -------VFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMI 432
>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Glycine max]
Length = 631
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 131/306 (42%), Gaps = 62/306 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y SI + L Q GH +++ ++ + M S + PD V Y+A++
Sbjct: 186 PTASTYNSIILMLMQEGHHEKVHELYNEMCS--------------EVHCFPDTVTYSALI 231
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+A + + + A + ++K+ G +P+A Y +M
Sbjct: 232 SAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLM------------------------- 266
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ +KV GK +EA+ V++M R + + Y +L R L +G+ E+A M
Sbjct: 267 -GIYFKV--------GKVEEALGLVKEMRARRCLLTVFTYTELIRGLGKSGRVEDAYMTY 317
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE- 242
+ K KP VV LI S ++++A +F++MK C+PN+VT N ++K+ E
Sbjct: 318 KNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLNCAPNVVTYNTIIKSLFEA 377
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
EA F+ M +D ++P +T++ ++D R + L+ +
Sbjct: 378 KAPLSEASSWFERMKKDG------------IVPSSFTYSILIDGYCKTNRVEKALLLLEE 425
Query: 303 MLHHGL 308
M G
Sbjct: 426 MDEKGF 431
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 145/318 (45%), Gaps = 38/318 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR----------------SLPKKKFKTGTLER 48
PD V ++ LG++ H+++ + D M+ SL + K
Sbjct: 327 PDVVLMNNLINILGRSNHLRDAIKLFDEMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASS 386
Query: 49 WDPRLEPDIVV-----YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
W R++ D +V Y+ +++ + + E A +L+++ ++G P Y ++ +
Sbjct: 387 WFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLG 446
Query: 104 ACGKYNLVYEFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
+Y++ E F++++++ +A Y V++ + G+ +EA++ +M++ G
Sbjct: 447 VAKRYDVANELFQELKENCGCSSARVYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVY 506
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y L + A + +EA + + P + S+ ++ +G + A +F +M
Sbjct: 507 AYNALMTGMVRAERMDEAFSLFRTMEENGCTPDINSHNIILNGLARTGGPKGALEMFTKM 566
Query: 223 KN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
KN P++V+ N ++ GLFEEA KL QEM+ KG D+ T++
Sbjct: 567 KNSTIKPDVVSFNTILGCLSRAGLFEEAAKLMQEMSS-----------KGFQY-DLITYS 614
Query: 282 TMLDACAAEKRWDDLELV 299
++L+A + DD ++V
Sbjct: 615 SILEAVG---KVDDCKMV 629
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 71/178 (39%), Gaps = 12/178 (6%)
Query: 153 ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI 212
+RR + Y L RCL E + + K + + +++ + +
Sbjct: 110 KRRNFEHDSTTYMALIRCLDEHRMFGEVWKTIQDMVKGSCAMAPAELSEIVRILGKAKMV 169
Query: 213 QNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKG 271
A +F Q+K C P T N ++ ++ G E+ +L+ EM + +
Sbjct: 170 NRALSVFYQVKGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVH---------- 219
Query: 272 LVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
PD T++ ++ A A R D ++ M +GL AK + ++ + GKVE
Sbjct: 220 -CFPDTVTYSALISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVE 276
>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 793
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/311 (22%), Positives = 128/311 (41%), Gaps = 50/311 (16%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV------------ 101
EPD Y A+++A R ++ A V +++ G +P+ TY +V+ V
Sbjct: 175 EPDASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVV 234
Query: 102 --------------------MLACGKYNLVYEFFRKV-----QKSYIPNALAYKVLVNTL 136
+++C + +Y+ KV + P+ + + L++
Sbjct: 235 ALVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVY 294
Query: 137 WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV 196
+ DEA+ +++ME G S Y L G +EA +++ +P V
Sbjct: 295 GKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDV 354
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
++YT LI +G I A +++M +N C PNL T N ++K + G F E M +F +
Sbjct: 355 ITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDD 414
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
+ + +PD+ T+NT+L ++ V+K M G +
Sbjct: 415 L------------RSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTY 462
Query: 316 LRMILDASRAG 326
+ +I SR G
Sbjct: 463 VSLISSYSRCG 473
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 122/273 (44%), Gaps = 25/273 (9%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D YN +++ C R ++ A V +++ G +P T+ +++V ++
Sbjct: 248 DRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYGKARMHDEAIGVL 307
Query: 116 RKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
++++ P+ + Y L+++ ++G EA E+ME +GI Y L L A
Sbjct: 308 KEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISGLDRA 367
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTC 233
GK + A+ D++ + KP + +Y LI+ G +F+ +++ P++VT
Sbjct: 368 GKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTW 427
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE--------YDKKGL------------- 272
N ++ + ++GL E +F+EM + R+ Y + GL
Sbjct: 428 NTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIE 487
Query: 273 --VIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
+ PDI T+N +L A A RW+ E ++ M
Sbjct: 488 AGIYPDISTYNAVLSALARGGRWEQAEKLFAEM 520
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 136/339 (40%), Gaps = 75/339 (22%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKKFKTGTLERW------DPRLE- 54
PD V + ++ GQ G E+ V M+ +P++ + + D +E
Sbjct: 422 PDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEI 481
Query: 55 ----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY--------- 95
PDI YNAVL+A R +WE A + +++ +P +Y
Sbjct: 482 YKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHAYAN 541
Query: 96 -----------------------GLVMEVMLACGKYNLVYEFFRKVQKSYIP-----NAL 127
GLV ++L K N + E +K+++ +L
Sbjct: 542 AKKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNNLSE----TEKAFLELGRRRCSL 597
Query: 128 AYKVLVNTLWREGKTDEAVSAVED----MERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
VL + GK + V VE+ M+ I S A Y L G CE+
Sbjct: 598 DINVLNAMVSVYGK-NRMVKKVEEILSLMKGSSINLSTATYNSLMHMYSRLGDCEKCENI 656
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ +I +P SY +I A G ++ A+ +F++MK+ P++VT NI VK+Y+
Sbjct: 657 LTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVA 716
Query: 243 HGLFEEAMKLFQEMAEDS--------NHINREYDKKGLV 273
+ +FEEA+ L + M N I +EY + G +
Sbjct: 717 NSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKI 755
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 86/202 (42%), Gaps = 16/202 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ L +AG I D M + G +P++ YNA++
Sbjct: 352 PDVITYTTLISGLDRAGKIDAAIGTYDEM-------LRNGC--------KPNLCTYNALI 396
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YI 123
R ++ V L+ G P T+ ++ V G + V F++++KS Y+
Sbjct: 397 KLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYV 456
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P Y L+++ R G D+++ + M GI + Y + L G+ E+A
Sbjct: 457 PERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKL 516
Query: 184 MDKICKVANKPLVVSYTGLIQA 205
++ + +P +SY+ L+ A
Sbjct: 517 FAEMENLDCRPDELSYSSLLHA 538
>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
Length = 806
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/361 (22%), Positives = 145/361 (40%), Gaps = 64/361 (17%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D + Y +I L + G + E D+I+ M S PD+V Y AV+N
Sbjct: 417 DKLGYSAIVHALCKEGRMSEAKDLINEMLS--------------KGHCPPDVVTYTAVVN 462
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-IP 124
R + + A +LQ + G KP+ +Y ++ M GK E ++ + P
Sbjct: 463 GFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSP 522
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N++ Y V+++ L REGK EA V +M +G L + LC G+ EA
Sbjct: 523 NSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEA---- 578
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHG 244
++ CL+ G C+ N+V ++ + ++
Sbjct: 579 ---------------RKFMEECLNKG---------------CAINVVNFTTVIHGFCQND 608
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
+ A+ + +M + H D++T+ T++D + R + + K+ML
Sbjct: 609 ELDAALSVLDDMYLINKH------------ADVFTYTTLVDTLGKKGRIAEATELMKKML 656
Query: 305 HHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARADRITPPALIKERFC--NRLENK 361
H G+ + +I + GKV +L+ I + ++R T + E+ C +LE
Sbjct: 657 HKGIDPTPVTYRTVIHRYCQMGKVDDLVAILEKMISRQKCRTIYNQVIEKLCVLGKLEEA 716
Query: 362 D 362
D
Sbjct: 717 D 717
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 99/242 (40%), Gaps = 39/242 (16%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V YN ++ + E A +L+ + +G P +Y +M + + V +
Sbjct: 310 PNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDL 369
Query: 115 FRKVQKSY--IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+K+ K + +P+ + Y L++ L + DEA+ ++D + +G Y + LC
Sbjct: 370 MKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALC 429
Query: 173 SAGKCEEA-----------------------------LMQMDKICKV-------ANKPLV 196
G+ EA L ++DK K+ +KP
Sbjct: 430 KEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNT 489
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
VSYT L+ +G A + N +++ SPN +T ++++ G EA + +E
Sbjct: 490 VSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVRE 549
Query: 256 MA 257
M
Sbjct: 550 MV 551
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 113/294 (38%), Gaps = 20/294 (6%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
++ V+ + R Q A VL +++ G +P+ ++V + + F ++Q
Sbjct: 245 FSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQ 304
Query: 120 K-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+PN + Y ++ + +EA+ +EDM +G + YY + LC +
Sbjct: 305 VVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIV 364
Query: 179 EALMQMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFN--QMKNFCSPNLVTCNI 235
E M K+ K P V+Y LI + A + Q K F L I
Sbjct: 365 EVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAI 424
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
V A + G EA L EM KG PD+ T+ +++ D
Sbjct: 425 -VHALCKEGRMSEAKDLINEMLS-----------KGHCPPDVVTYTAVVNGFCRLGEVDK 472
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRIT 345
+ + + M HG N + ++ R GK E++ ++ EH + IT
Sbjct: 473 AKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSIT 526
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 115/285 (40%), Gaps = 31/285 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM-----------------------RSLPKKKF 41
P+++ Y I L + G + E DV+ M R+ +KF
Sbjct: 522 PNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKF 581
Query: 42 KTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
L + ++V + V++ + + + A VL + + TY +++
Sbjct: 582 MEECLNKG---CAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDT 638
Query: 102 MLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ G+ E +K + K P + Y+ +++ + GK D+ V+ +E M R
Sbjct: 639 LGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAILEKMISRQ--KC 696
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
+Y + LC GK EEA + K+ + A++ + L++ L G +A +
Sbjct: 697 RTIYNQVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCYALMEGYLKKGVPLSAYKVAC 756
Query: 221 QMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
+M N P++ C + K + G +EA KL + E HI+
Sbjct: 757 RMFNRNLIPDVKMCEKLSKRLVLKGKVDEADKLMLRLVE-RGHIS 800
>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
Length = 683
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 141/308 (45%), Gaps = 17/308 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
E ++V+ N V+ C+ + A + + + +G P TY ++M + G++
Sbjct: 310 EVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVR 369
Query: 114 FFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+++ K PN + Y L+++ R G D+A + ++ M +G ++ Y + LC
Sbjct: 370 MLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALC 429
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQMKNFCSPNLV 231
GK ++A + ++ KP + +Y +I ++ ++ A +IF N ++ N +
Sbjct: 430 KDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGI 489
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ A L +G ++E ++L EM + D+ ++N ++ A E
Sbjct: 490 TYNTLIHALLRNGRWQEGLRLASEMLLHGCQL------------DVISYNGLIKALCKEG 537
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARADRITPPALI 350
D + + M+ G+ N + +I + +AGKV + LE++ E L + +TP +
Sbjct: 538 NVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQG--LTPDIVT 595
Query: 351 KERFCNRL 358
N L
Sbjct: 596 YNTLINGL 603
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 126/310 (40%), Gaps = 45/310 (14%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P YN VL+ R A + +++ + P+ T+G+ + G+
Sbjct: 138 VSPSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRAGDAL 197
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
R + + +P+A+ Y+ +++ L +G EA +++M G + DL L
Sbjct: 198 ALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGL 257
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ--------------------------- 204
C G+ EA +D++ P VV+Y L+Q
Sbjct: 258 CGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVVMLN 317
Query: 205 ----ACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
CL G + A ++ M + C P++ T +I++ + G F A+++ EM E
Sbjct: 318 TVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEE- 376
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
KG P+I T++T+L + WDD + +ML G N++ + +I
Sbjct: 377 ----------KGCA-PNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGII 425
Query: 320 LDASRAGKVE 329
+ GK++
Sbjct: 426 YALCKDGKLD 435
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 113/256 (44%), Gaps = 14/256 (5%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-V 118
YN ++ A + + + A ++Q++K QG KP TY ++ + FR +
Sbjct: 421 YNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLI 480
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
++ + N + Y L++ L R G+ E + +M G Y L + LC G +
Sbjct: 481 EEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVD 540
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMV 237
++ ++++ KP SY LI +G +++A + +M N +P++VT N ++
Sbjct: 541 RSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLI 600
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ G A+ L +++ ++ H PDI T+N ++ + DD
Sbjct: 601 NGLCKVGWTHAALNLLEKLPNENVH------------PDIVTYNILISWHCKVRLLDDAA 648
Query: 298 LVYKRMLHHGLHFNAK 313
++ + + G+ N +
Sbjct: 649 MLLDKAISGGIVPNER 664
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/359 (22%), Positives = 139/359 (38%), Gaps = 62/359 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN-AV 63
PD V Y+++ L G + E ++D M + D+ +N V
Sbjct: 210 PDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMG---------------CAADVNTFNDLV 254
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME----------------------- 100
L C + E A V ++ QG PS TYG +++
Sbjct: 255 LGLCGLGRVREAARLV-DRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNV 313
Query: 101 VML-----AC---GKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVED 151
VML C GK E + + K P+ Y +L++ L + G+ AV +++
Sbjct: 314 VMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDE 373
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
ME +G + Y L C G ++A +D++ Y G+I A G
Sbjct: 374 MEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGK 433
Query: 212 IQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270
+ A + +MK+ C P++ T N M+ + L EEA +F+ + E+
Sbjct: 434 LDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEG---------- 483
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
V+ + T+NT++ A RW + + ML HG + + +I + G V+
Sbjct: 484 --VVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVD 540
>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g06920-like [Cucumis sativus]
Length = 904
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/363 (20%), Positives = 151/363 (41%), Gaps = 34/363 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR--SLPKKKF---------KTGTLERW---- 49
P V+Y I LG+ G + E + M+ ++P K G LE
Sbjct: 373 PSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVR 432
Query: 50 ----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
D L P+++ N +++ + ++ + A + + L + +P A TY ++E +
Sbjct: 433 DAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRH 492
Query: 106 GKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G+ + Y+ + + + + IPNA+ Y L+ ++ G+ ++ +M R G L
Sbjct: 493 GRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLL 552
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK- 223
C+ AG+ E+ +I + P SYT LI + +G A +F MK
Sbjct: 553 NTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKE 612
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
C + N ++ + + G +A +L +EM + P + T+ ++
Sbjct: 613 QGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHE------------PTVVTYGSV 660
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADR 343
+D A R D+ ++++ G+ N + +I + G+++ + E L +
Sbjct: 661 IDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKG- 719
Query: 344 ITP 346
+TP
Sbjct: 720 LTP 722
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/360 (21%), Positives = 147/360 (40%), Gaps = 69/360 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDP- 51
PD V Y S+ LG+ G + E + + + M SL + FK G E
Sbjct: 477 PDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKI 536
Query: 52 -----RL--EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
RL PD+++ N ++ + + E + Q++K G P A +Y +++ ++
Sbjct: 537 YNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVK 596
Query: 105 CGKYNLVYEFF-------------------------RKVQKSYI-----------PNALA 128
G + YE F KV K+Y P +
Sbjct: 597 AGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVT 656
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188
Y +++ L + + DEA E+ + +GI + +Y L G+ +EA + M+++
Sbjct: 657 YGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELM 716
Query: 189 KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFE 247
+ P V ++ L+ A + + I A F MK+ C+PN +T +I++ + F
Sbjct: 717 QKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFN 776
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
+A +QEM K+G P+++T+ TM+ A + + ++++ G
Sbjct: 777 KAFVFWQEM-----------QKQGFK-PNVFTYTTMISGLAKAGNIVEADTLFEKFKEKG 824
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/377 (19%), Positives = 155/377 (41%), Gaps = 44/377 (11%)
Query: 13 IAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQ 72
I ++ ++ ++E F I +MR L + P Y ++ A +
Sbjct: 171 IVLSFIKSRKLREAFTFIQTMRKL---------------KFRPAFSAYTNLIGALSTSRD 215
Query: 73 WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKV 131
+ + QQ+++ G + + ++ V G+ + +++ + + P+ + Y V
Sbjct: 216 SDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNV 275
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA 191
++ + GK D A +M+ G+V Y + LC A + EA+ + + +
Sbjct: 276 CIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNK 335
Query: 192 NKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCSPNLVTCNIMVKAYLEHGLFEEAM 250
P +Y +I +G ++A + Q + C P++V+ N ++ G +EA+
Sbjct: 336 QVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEAL 395
Query: 251 KLFQEMAED----------------------SNHINREYDKKGLVIPDIYTFNTMLDACA 288
K F+EM +D + + R+ K + P++ T N M+D
Sbjct: 396 KKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLC 455
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI---- 344
+R DD +++ + H +A + +I R G+V+ +E + A++I
Sbjct: 456 KAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAV 515
Query: 345 TPPALIKERF-CNRLEN 360
+LI+ F C R E+
Sbjct: 516 VYTSLIRNFFKCGRKED 532
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/325 (19%), Positives = 137/325 (42%), Gaps = 34/325 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKE---LFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNA 62
D V Y S+ L +A + E LF+ +D + +P YN
Sbjct: 304 DDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCA------------------YAYNT 345
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY 122
++ ++E A+ +L++ +++G PS +Y ++ + G+ + + F +++K
Sbjct: 346 MIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDA 405
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
IPN Y ++++ L + GK + A+ + M+ G+ + + LC A + ++A
Sbjct: 406 IPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACS 465
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYL 241
+ + +P V+Y LI+ G + A ++ QM + PN V +++ +
Sbjct: 466 IFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFF 525
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G E+ K++ EM PD+ NT +D + +++
Sbjct: 526 KCGRKEDGHKIYNEMLRLGCS------------PDLLLLNTYMDCVFKAGEIEKGRALFQ 573
Query: 302 RMLHHGLHFNAKRHLRMILDASRAG 326
+ + G +A+ + +I +AG
Sbjct: 574 EIKNLGFIPDARSYTILIHGLVKAG 598
Score = 38.5 bits (88), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 43/218 (19%), Positives = 85/218 (38%), Gaps = 13/218 (5%)
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
AY L+ + R K + +E+M G S ++ + K EA + +
Sbjct: 132 AYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTM 191
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEHGLF 246
K+ +P +YT LI A S + +F QM+ + N+ +++ + G
Sbjct: 192 RKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRV 251
Query: 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306
+ A+ L EM +S + PD+ +N +D + D + M +
Sbjct: 252 DAALSLLDEMKSNS------------LEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKAN 299
Query: 307 GLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI 344
GL + + MI +A ++ +EH+ + ++
Sbjct: 300 GLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQV 337
>gi|298204849|emb|CBI34156.3| unnamed protein product [Vitis vinifera]
Length = 442
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 122/266 (45%), Gaps = 21/266 (7%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD+V+Y +++++ + +Q AF + Q+ QG P TY ++ + ++ V
Sbjct: 182 QPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTT 241
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++ S I P+ + + +V+ L +EGK EA V+ M +RG+ Y L C
Sbjct: 242 LLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHC 301
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC-LDSGNIQNAAYIFNQMKNFCSPNLV 231
+ +EA+ D + + P V+SYT LI A D G + + + +K +P+ V
Sbjct: 302 LQSEMDEAVKVFDMMVRKGFAPDVISYTTLINAGKKDGGGLVSLQEVIGLVKE--TPDAV 359
Query: 232 ---TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
++ K ++ LFE+ L EM ++P++ F+T++DA
Sbjct: 360 KGGAVEVIRKDKMK--LFEKGRTLLNEMVNSK------------IMPNVVIFSTVVDALC 405
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKR 314
E + + V M+ G+ NA +
Sbjct: 406 KEGKVMEAHDVVDMMIKRGVEPNAVK 431
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 115/274 (41%), Gaps = 14/274 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++ N ++N+ + AF VL ++ + G +P TT+ ++ + GK
Sbjct: 78 PNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHL 137
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F K + + + PN + Y L+N L + G T A+ + ME+ +Y + LC
Sbjct: 138 FDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCK 197
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
+ EA ++ P + +YT L+ A + ++ + NQM N P++V
Sbjct: 198 DRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVI 257
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+ +V A + G EA ++ M + V PD+ T+ T++D +
Sbjct: 258 FSTVVDALCKEGKVTEAHEIVDMMIQRG------------VEPDVVTYTTLMDGHCLQSE 305
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
D+ V+ M+ G + + +I + G
Sbjct: 306 MDEAVKVFDMMVRKGFAPDVISYTTLINAGKKDG 339
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/236 (20%), Positives = 105/236 (44%), Gaps = 16/236 (6%)
Query: 54 EPDIVVYNAVLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+PD + ++ CV K E A + ++ +G +P+ TYG ++ + G +
Sbjct: 112 QPDPTTFTTLIRGLCVEGKIGE-ALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAI 170
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
R +++ P+ + Y ++++L ++ + EA + M +GI Y L L
Sbjct: 171 RLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHAL 230
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C+ + + ++++ P VV ++ ++ A G + A I + M + P++
Sbjct: 231 CNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDV 290
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
VT ++ + +EA+K+F M +KG PD+ ++ T+++A
Sbjct: 291 VTYTTLMDGHCLQSEMDEAVKVFDMMV-----------RKGFA-PDVISYTTLINA 334
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 82/202 (40%), Gaps = 50/202 (24%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + ++ L + G + E +++D M ++R +EPD+V Y ++
Sbjct: 253 PDVVIFSTVVDALCKEGKVTEAHEIVDMM------------IQRG---VEPDVVTYTTLM 297
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY---------------------GLVMEVML 103
+ + + + A V + ++G P +Y GLV E
Sbjct: 298 DGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINAGKKDGGGLVSLQEVIGLVKETPD 357
Query: 104 AC--GKYNLV----YEFFRK--------VQKSYIPNALAYKVLVNTLWREGKTDEAVSAV 149
A G ++ + F K V +PN + + +V+ L +EGK EA V
Sbjct: 358 AVKGGAVEVIRKDKMKLFEKGRTLLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVV 417
Query: 150 EDMERRGIVGSAALYYDLARCL 171
+ M +RG+ +A +D +C+
Sbjct: 418 DMMIKRGVEPNAVKVFDTMKCV 439
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/245 (20%), Positives = 98/245 (40%), Gaps = 55/245 (22%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL---------------- 46
PD V Y SI +L + + E F++ M + + F +L
Sbjct: 183 PDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTL 242
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ + ++ PD+V+++ V++A + + A ++ + Q+G +P TY +M+
Sbjct: 243 LNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCL 302
Query: 105 CGKYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREG--------------KTDEAV--S 147
+ + + F V+K + P+ ++Y L+N ++G +T +AV
Sbjct: 303 QSEMDEAVKVFDMMVRKGFAPDVISYTTLINAGKKDGGGLVSLQEVIGLVKETPDAVKGG 362
Query: 148 AVE------------------DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK 189
AVE +M I+ + ++ + LC GK EA +D + K
Sbjct: 363 AVEVIRKDKMKLFEKGRTLLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIK 422
Query: 190 VANKP 194
+P
Sbjct: 423 RGVEP 427
>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 597
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 133/309 (43%), Gaps = 28/309 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P ++ Y +++ WE A + ++ QG +P+ T+ ++++V+ GK
Sbjct: 273 MTPTVISYTSLM--------WEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAK 324
Query: 113 EFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +Q+ +PN L Y L+ G + A M +G Y L
Sbjct: 325 DLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGY 384
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NL 230
C K EEA+ + + +V +P V +Y L+ G + +A +F MK + P +L
Sbjct: 385 CKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDL 444
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAA 289
I + ++G EAM+LF ++ + Y+ K DI FN ++D C A
Sbjct: 445 YIYGIFLNGLCKNGCLFEAMELFNKL--------KSYNIK----LDIECFNCLIDGLCKA 492
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR----ADRIT 345
K EL ++++ L + + MI + R G+V I ++ + + D+IT
Sbjct: 493 GKLETAWEL-FEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKIT 551
Query: 346 PPALIKERF 354
LI+ F
Sbjct: 552 YATLIRGFF 560
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/289 (19%), Positives = 121/289 (41%), Gaps = 47/289 (16%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDIV Y ++ + A + ++++ G P+A TYG +M+ + G ++ +
Sbjct: 164 PDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKL 223
Query: 115 FRKVQK-------SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+++ ++ P ++Y ++++ L ++ + DEA E+M+ +G+ + Y L
Sbjct: 224 HQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSL 283
Query: 168 A---------------------------RCLCSAGKCEEALMQMDKICKVANKPLVVSYT 200
LC GK EA ++ + + P +++Y
Sbjct: 284 MWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYN 343
Query: 201 GLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
LI+ G++ +A +F M + C P+++ +++ Y + EEAMKL+ M +
Sbjct: 344 SLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQV 403
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
PD+ T+ +L + D + ++ M +G+
Sbjct: 404 GKR------------PDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGI 440
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/314 (20%), Positives = 133/314 (42%), Gaps = 36/314 (11%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVN 134
AF + P +++ ++ + Y+ V+ + +++ S I P+ +L+N
Sbjct: 80 AFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLN 139
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194
L + E ++ + + RRG + Y L + LC + +A + ++ K+ P
Sbjct: 140 CLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTP 199
Query: 195 LVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-------PNLVTCNIMVKAYLEHGLFE 247
++Y L++ +GNI A + +M N S P +++ +I++ A + +
Sbjct: 200 NAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRRED 259
Query: 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
EA LF+EM + P + ++ +++ W++ + ++ M++ G
Sbjct: 260 EARDLFEEMKVQG------------MTPTVISYTSLM--------WEEAKRLFNEMVNQG 299
Query: 308 LHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPALIKERFCNRLENKDY 363
+ N +I + GKV +LLE+ + + +T +LI E FC D
Sbjct: 300 VQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLI-EGFC---LVGDL 355
Query: 364 GSAISCLVSHPVSG 377
SA VS P G
Sbjct: 356 NSARELFVSMPSKG 369
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 105/245 (42%), Gaps = 34/245 (13%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ PD N +LN + V+ + ++G P TY +++ + + +
Sbjct: 127 ISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAA 186
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAV---------SAVEDMERRGIVGSAA 162
F ++QK PNA+ Y L+ L R G A+ S++ + + +V S +
Sbjct: 187 LLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYS 246
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+ D LC + +EA +++ P V+SYT L+ + A +FN+M
Sbjct: 247 IIID---ALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMW--------EEAKRLFNEM 295
Query: 223 KN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
N PN+VT N+++ + G EA L + M + ++P++ T+N
Sbjct: 296 VNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRG------------IVPNLLTYN 343
Query: 282 TMLDA 286
++++
Sbjct: 344 SLIEG 348
>gi|115475155|ref|NP_001061174.1| Os08g0191900 [Oryza sativa Japonica Group]
gi|40253652|dbj|BAD05595.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113623143|dbj|BAF23088.1| Os08g0191900 [Oryza sativa Japonica Group]
gi|125602452|gb|EAZ41777.1| hypothetical protein OsJ_26318 [Oryza sativa Japonica Group]
gi|215695295|dbj|BAG90486.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704436|dbj|BAG93870.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 609
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 144/332 (43%), Gaps = 22/332 (6%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+P ++ A++ A R KQ+ A V ++++ G +PSA TY ++++ + KY
Sbjct: 174 KPSVISQTALMEAYGRAKQYRKAEAVFRRMQTSGPEPSAVTYQIILKSFVEGDKYKEAEA 233
Query: 114 FFRKV----QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
F + + S+ P+ + +++ + G +A M RGI S + L
Sbjct: 234 IFEDLLNEKRASFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSL-- 291
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSP 228
+ +E D++ + A KP VVSY+ LI+A + + A +F +M + P
Sbjct: 292 -MSFETNYKEVSSIYDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRP 350
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
+ NI++ A+ GL EEA +F+ M ++ V PD+ ++ TM+ A
Sbjct: 351 TRKSYNILIDAFAISGLVEEAHTVFKAM------------RRHRVEPDLCSYTTMVLAYV 398
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPA 348
D E ++R+ GL N + ++ S+ VE + +E + R + P
Sbjct: 399 NASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERM-RMQGVEPNQ 457
Query: 349 LIKERFCN-RLENKDYGSAISCLVSHPVSGSP 379
I + N D+G+A+ G P
Sbjct: 458 TIYTTIMDVHGRNSDFGNAVIWFKEMEARGYP 489
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/254 (19%), Positives = 112/254 (44%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y+ I + + KE + + + + + FK PD +++ ++
Sbjct: 210 PSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFK------------PDQKMFHMMI 257
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + A + Q+ ++G S T+ +M Y V + ++Q++ +
Sbjct: 258 YMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSFET---NYKEVSSIYDQMQRTALK 314
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++Y +L+ + + +EA++ E+M G+ + Y L +G EEA
Sbjct: 315 PDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTV 374
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ + +P + SYT ++ A +++ ++ A F ++K + PN+V ++K Y +
Sbjct: 375 FKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSK 434
Query: 243 HGLFEEAMKLFQEM 256
E M++++ M
Sbjct: 435 LNNVERVMRVYERM 448
>gi|15218855|ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g03560, mitochondrial; Flags: Precursor
gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana]
gi|332189465|gb|AEE27586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 125/260 (48%), Gaps = 26/260 (10%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R++PDIV YN ++ + Q + A L+ ++ +G + TY +++ A +
Sbjct: 252 RIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSC 311
Query: 112 YEFFRKVQKSYI---PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
++++ + I P+A + +++ L +EGK +E + E+M R+G + A+Y L
Sbjct: 312 VALYQEMDEKGIQVPPHA--FSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLI 369
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP 228
+G E+A+ + ++ KP VV+Y+ ++ +G ++ A F+ C
Sbjct: 370 DGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHT----CRF 425
Query: 229 NLVTCNIMVKAYLEHGL-----FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
+ + N M + L GL +EA +LF+EM+E KG D Y +N +
Sbjct: 426 DGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSE-----------KGCT-RDSYCYNAL 473
Query: 284 LDACAAEKRWDDLELVYKRM 303
+DA ++ D+ ++KRM
Sbjct: 474 IDAFTKHRKVDEAIALFKRM 493
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 2/216 (0%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D +PD+V Y+ V+N + + E A + G ++ Y +++ + G+ +
Sbjct: 390 DEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVD 449
Query: 110 LVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM-ERRGIVGSAALYYDL 167
F ++ +K ++ Y L++ + K DEA++ + M E G + Y L
Sbjct: 450 EAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTIL 509
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227
+ + EEAL D + P + L SG + A I +++
Sbjct: 510 LSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPMGV 569
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
C M+ + G +EA KL + E +
Sbjct: 570 ILDAACEDMINTLCKAGRIKEACKLADGITERGREV 605
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 15/237 (6%)
Query: 107 KYNLVYEFF--RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
K ++ + FF + QK Y N Y LV+ L D ++++ + +
Sbjct: 131 KPDIAWSFFCWSRKQKKYTHNLECYVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAA 190
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
L + G EE L K+ + +P + +Y L+ + + + +A +F M++
Sbjct: 191 NALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMES 250
Query: 225 F-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
P++VT N M+K Y + G ++AM+ ++M E H E DK T+ TM
Sbjct: 251 GRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDM-ETRGH---EADK--------ITYMTM 298
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
+ AC A+ + +Y+ M G+ +I + GK+ +E++ R
Sbjct: 299 IQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIR 355
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/287 (19%), Positives = 125/287 (43%), Gaps = 28/287 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + L + G ++E D + R +D L + + Y++++
Sbjct: 395 PDVVTYSVVVNGLCKNGRVEEALDYFHTCR--------------FDG-LAINSMFYSSLI 439
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK--SY 122
+ + + + A + +++ ++G + Y +++ K + F+++++
Sbjct: 440 DGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGC 499
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
Y +L++ +++E + +EA+ + M +GI +AA + L+ LC +GK A
Sbjct: 500 DQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACK 559
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAY 240
+D++ + L + +I +G I+ A + + + + P + +M+ A
Sbjct: 560 ILDELAPMG-VILDAACEDMINTLCKAGRIKEACKLADGITERGREVPGRIR-TVMINAL 617
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
+ G + AMKL + I Y++ G V + F T+L+ C
Sbjct: 618 RKVGKADLAMKLMH------SKIGIGYERMGSVKRRV-KFTTLLETC 657
>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
Length = 786
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/359 (22%), Positives = 140/359 (38%), Gaps = 64/359 (17%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D A + LG+ G + ++D M P + D+ Y VL+
Sbjct: 136 DASALEMVVRALGREGQHDAVCALLDEMPLPPGSRL--------------DVRAYTTVLH 181
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV------------------------ 101
A R ++E A + +L++QG P+ TY +V++V
Sbjct: 182 ALSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVE 241
Query: 102 ---------MLACGKYNLVYE---FFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSA 148
+ AC + LV E FF ++ + + P + Y L+ + G EA+
Sbjct: 242 PDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRV 301
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+++ME+ G A Y +LA AG EEA +D + P +Y ++ A +
Sbjct: 302 LKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGN 361
Query: 209 SGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
G + A +F+QM K+ C PN+ T N ++ + F +++ EM+ NR
Sbjct: 362 IGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNR-- 419
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
T+NTML C D + V + M G+ + + +I R G
Sbjct: 420 ----------VTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCG 468
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/392 (21%), Positives = 162/392 (41%), Gaps = 25/392 (6%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLK-QQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
D V+ A R Q + +L ++ G + Y V+ + G+Y E
Sbjct: 136 DASALEMVVRALGREGQHDAVCALLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERAVEL 195
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKT-DEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F ++++ + P + Y V+++ R G++ V+ +++M G+ + C
Sbjct: 196 FAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDDFTASTVIAACC 255
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
G +EA+ + + + P VV+Y L+Q +GN A + +M ++ C P+ V
Sbjct: 256 RDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAV 315
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N + Y G +EEA K M KGL +P+ +T+NT++ A
Sbjct: 316 TYNELAGTYARAGFYEEAAKCLDTMT-----------SKGL-LPNAFTYNTVMTAYGNIG 363
Query: 292 RWDDLELVYKRMLHHGLHFNAKRH---LRMILDASR-AGKVELLEITWEHLARADRITPP 347
+ D+ ++ +M G N + L M+ SR +E+L +R+T
Sbjct: 364 KVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWN 423
Query: 348 ALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLH 407
++ C + +DY ++ ++ S E SR+ + + + ++ +
Sbjct: 424 TMLA--VCGKRGMEDY---VTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYN 478
Query: 408 EASSSLTTRNGSPYPVLQNLISSCKDFLRTQS 439
E +S+ + Y L N++S D+ QS
Sbjct: 479 EMTSAGFAPCLTTYNALLNVLSRQGDWSTAQS 510
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/277 (19%), Positives = 119/277 (42%), Gaps = 14/277 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P + YNA+LN R+ W A ++ +++ +G KP+ +Y L+++ G +
Sbjct: 487 PCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAI 546
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++V + P+ + + LV ++ + A ++++ RG ++ +
Sbjct: 547 EKEVYGGTVFPSWVILRTLVIANFKCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAK 606
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
G + D I + P +++Y L+ A I NQ+K+ P++V+
Sbjct: 607 NGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVS 666
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ + + GL +EA ++ EM D + P + T++T++ A+ +
Sbjct: 667 YNTVINGFCKQGLIKEAQRILSEMIADG------------MAPCVVTYHTLVGGYASLEM 714
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + V M+ H L + R++ +A + E
Sbjct: 715 FSEAREVINYMIQHNLKPMELTYRRVVDSYCKAKRFE 751
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 126/310 (40%), Gaps = 48/310 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------SLPKKKFKTGTL---ERWDPRLE- 54
P+ Y ++ G G + E + D M+ ++ F G L R+ LE
Sbjct: 347 PNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEM 406
Query: 55 ----------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
P+ V +N +L C +R + VL+ +K G + S TY ++
Sbjct: 407 LGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGR 466
Query: 105 CGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
CG ++ + ++ + + P Y L+N L R+G A S V M +G +
Sbjct: 467 CGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQS 526
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANK----PLVVSYTGLIQA---CLDSGNIQNAA 216
Y L +C G + +D I K P V L+ A C G I+ A
Sbjct: 527 YSLLLQCYAKGGN----IAGIDAIEKEVYGGTVFPSWVILRTLVIANFKCRRLGGIEKA- 581
Query: 217 YIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
F ++K +P+LV N M+ Y ++G++ + ++F + K+ + P
Sbjct: 582 --FQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSI------------KQSGLSP 627
Query: 276 DIYTFNTMLD 285
D+ T+N+++D
Sbjct: 628 DLITYNSLMD 637
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 100/243 (41%), Gaps = 19/243 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y +A T +AG +E +D+M S L P+ YN V+
Sbjct: 312 PDAVTYNELAGTYARAGFYEEAAKCLDTMTS---------------KGLLPNAFTYNTVM 356
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-I 123
A + + A + Q+K+ G P+ TY ++ ++ ++ ++ E ++ +S
Sbjct: 357 TAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCT 416
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + ++ + G D +E M+ G+ S Y L G A
Sbjct: 417 PNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKM 476
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
+++ P + +Y L+ G+ A I ++M K F PN + +++++ Y
Sbjct: 477 YNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGF-KPNDQSYSLLLQCYA 535
Query: 242 EHG 244
+ G
Sbjct: 536 KGG 538
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/327 (19%), Positives = 115/327 (35%), Gaps = 66/327 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y ++ G+AG+ E V+ M +PD V YN +
Sbjct: 277 PCVVTYNALLQVFGKAGNYTEALRVLKEME---------------QDGCQPDAVTYNELA 321
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-I 123
R +E A L + +G P+A TY VM GK + F +++KS +
Sbjct: 322 GTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCV 381
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y ++ L ++ + + + +M R G C+
Sbjct: 382 PNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSG---------------CT---------- 416
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV--TCNIMVKAYL 241
P V++ ++ C G + MK+ C L T N ++ AY
Sbjct: 417 ----------PNRVTWNTMLAVCGKRGMEDYVTRVLEGMKS-CGVELSRDTYNTLIAAYG 465
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
G A K++ EM P + T+N +L+ + + W + +
Sbjct: 466 RCGSRTNAFKMYNEMTSAG------------FAPCLTTYNALLNVLSRQGDWSTAQSIVS 513
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKV 328
+M G N + + ++ ++ G +
Sbjct: 514 KMRTKGFKPNDQSYSLLLQCYAKGGNI 540
>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
Length = 918
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/354 (21%), Positives = 144/354 (40%), Gaps = 46/354 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM---RSLPKKKFKTGTLERWDPRLEPDIVVYN 61
P+TV Y ++ L +G + E FD+I M LP TG P I + +
Sbjct: 283 PNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTG----------PIIALCD 332
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
C +E A+ + +K +G +P+ TY ++ + G + F ++ +
Sbjct: 333 M---GC-----YEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRD 384
Query: 122 YI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ PN + Y L+N L + A + M R G + Y ++ + C G ++A
Sbjct: 385 GVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKA 444
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKA 239
++ M+ + + + +V+Y +I+ DSGN +A I + M++ C P+ + ++
Sbjct: 445 MLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICG 504
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINR-----------------------EYDKKGLVIPD 276
+ + E A LF EM +D N E+ K+ P+
Sbjct: 505 FCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 564
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+ T+N ++ + + E + K M+ G+ N + MI + G L
Sbjct: 565 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSL 618
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/362 (21%), Positives = 147/362 (40%), Gaps = 40/362 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y ++ L + G++ + ++ KK F++ + PD Y +++
Sbjct: 213 PNLLIYNAVINALCKDGNVAD-------AETIMKKVFES--------EMSPDTFTYTSMI 257
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
R+ + A V Q+ ++G +P+ TY ++ + G+ N ++ R+ + +
Sbjct: 258 LGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGIL 317
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P A + L G ++A DM+ +G + Y L LC +G + A+
Sbjct: 318 PTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGL 377
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + P V+Y LI +++ I+ A + N M +N CSPN+VT N M+K Y
Sbjct: 378 FHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCI 437
Query: 243 HGLFEEAMKLFQEMAEDS--------NHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
G ++AM + M + N I + Y G + + M D W
Sbjct: 438 LGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 497
Query: 295 DLELV---------------YKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
EL+ + M+ GL N + +I + K++ EH+
Sbjct: 498 YTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMK 557
Query: 340 RA 341
R+
Sbjct: 558 RS 559
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 126/302 (41%), Gaps = 29/302 (9%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG---KYNLV 111
P+ V YNA++N V ++ + AF VL + + G P+ TY +++ G K LV
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+Q+ + N + Y ++ G T A+ ++ M G Y +L
Sbjct: 448 MN--NMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 505
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C K E A +++ P V+YT LI + A + MK + C PN+
Sbjct: 506 CKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNV 565
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDS---NHINREYDKKGLV-------------- 273
T N+++ + F A +L + M E+ N + GL
Sbjct: 566 QTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNK 625
Query: 274 ------IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
+P++ T+++++ A E + ++ E ++ + HGL + +++MI +GK
Sbjct: 626 MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGK 685
Query: 328 VE 329
VE
Sbjct: 686 VE 687
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 78/152 (51%), Gaps = 1/152 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++ YN +++ ++ + GA + + + ++G P+ TY +++ + G +L E
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F K +++ +PN L Y L+ L +EGK +EA + ++ER G++ Y +
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 682
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+GK E A + ++ K +P + +Y LI+
Sbjct: 683 SGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKG 714
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 103/253 (40%), Gaps = 17/253 (6%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+ V Y +I +G+ ++D MR D +PD Y ++
Sbjct: 459 NLVTYNTIIKGYCDSGNTTSALRILDLMR---------------DGGCKPDEWSYTELIC 503
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ + E AF + ++ G P+ TY +++ K + +++S P
Sbjct: 504 GFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRP 563
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N Y VL++ L ++ A + M GI + Y + LC G AL
Sbjct: 564 NVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMF 623
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
+K+ + P +++Y+ LI+A G ++ A +F ++ ++ P+ +T M++AY+
Sbjct: 624 NKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMS 683
Query: 244 GLFEEAMKLFQEM 256
G E A M
Sbjct: 684 GKVEHAFNFLGRM 696
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/294 (20%), Positives = 105/294 (35%), Gaps = 49/294 (16%)
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE-FFRKVQKS 121
++ +C ++ L L Q G + Y ++ + G V + + R + +
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210
Query: 122 YIPNALAYKVLVNTLWREGKT-----------------------------------DEAV 146
PN L Y ++N L ++G D A+
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
M + G + Y L LC +G+ EA + ++ P + TG I A
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIAL 330
Query: 207 LDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
D G ++A +F MKN C PN+ T ++ G+ + A+ LF M+ D
Sbjct: 331 CDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDG----- 385
Query: 266 EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
V P+ T+N +++ +R +V M +G N + MI
Sbjct: 386 -------VFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMI 432
>gi|357142282|ref|XP_003572519.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 706
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 110/269 (40%), Gaps = 21/269 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTL------ERWDPRLE---- 54
P + Y I + G +KE + M P L ERW+ E
Sbjct: 258 PGAIVYNEIISCFAELGRVKEALHLFSCMPCKPDIFSYNAVLKGLCRAERWEDAGELITE 317
Query: 55 -------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK 107
PD V +N V++ + + A V+ Q+ + G+KP TY ++ G
Sbjct: 318 MVRKDCSPDEVTFNTVISFLCHKGLVDCALEVVDQMPKYGRKPDNFTYSALINAFSEQGC 377
Query: 108 YNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
E R + S PN + YK ++ L R+G+ ++ + +M R ++ +
Sbjct: 378 VEDALELLRSMPCS--PNTVCYKSVLKGLCRDGQWEDVGQLIGEMVRNDCAPDEMVFGLI 435
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227
CLC G + L + ++ P VV YT L+ + G + ++ +F M C
Sbjct: 436 IDCLCQRGLVDCGLEVLQEVPNYGCSPDVVMYTSLLNGFAEYGRVDDSLKLFKSMT--CK 493
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
PN VT N ++ + L+E+A KL EM
Sbjct: 494 PNTVTYNYVLMGLCKVELWEDAGKLIDEM 522
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 113/254 (44%), Gaps = 23/254 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ + G + DS+ K FK+ T + P+ V YN VL
Sbjct: 462 PDVVMYTSLLNGFAEYGRVD------DSL-----KLFKSMTCK-------PNTVTYNYVL 503
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ + WE A ++ ++ Q P+ T+ +++ + G + F K+Q
Sbjct: 504 MGLCKVELWEDAGKLIDEMVGQECPPNEMTFSILISSLCQKGLVECAIDVFEKMQMYGCT 563
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L N L +G D A+ + +M + Y + LC A E+A
Sbjct: 564 PNVIIYSTLNNGLSEKGCVDNALKLLNNMSCKA---DTICYSSALKGLCRAELWEDAGEL 620
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ ++ + P V+++ +I G ++ A + + M + C+PN+V + ++ + E
Sbjct: 621 IVEMFRKDCPPDEVTFSIIITNLCQQGFVEYATEVSDLMLKYECTPNIVIYSSLINGFSE 680
Query: 243 HGLFEEAMKLFQEM 256
HG E+A+KL + M
Sbjct: 681 HGHLEDALKLLRSM 694
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/270 (20%), Positives = 116/270 (42%), Gaps = 23/270 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y ++ + G ++ D ++ +RS+P P+ V Y +VL
Sbjct: 360 PDNFTYSALINAFSEQGCVE---DALELLRSMP---------------CSPNTVCYKSVL 401
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
R QWE ++ ++ + P +GL+++ + G + E ++V
Sbjct: 402 KGLCRDGQWEDVGQLIGEMVRNDCAPDEMVFGLIIDCLCQRGLVDCGLEVLQEVPNYGCS 461
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L+N G+ D+++ + M + + Y + LC E+A
Sbjct: 462 PDVVMYTSLLNGFAEYGRVDDSLKLFKSMTCKP---NTVTYNYVLMGLCKVELWEDAGKL 518
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+D++ P ++++ LI + G ++ A +F +M+ + C+PN++ + + E
Sbjct: 519 IDEMVGQECPPNEMTFSILISSLCQKGLVECAIDVFEKMQMYGCTPNVIIYSTLNNGLSE 578
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGL 272
G + A+KL M+ ++ I KGL
Sbjct: 579 KGCVDNALKLLNNMSCKADTICYSSALKGL 608
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 66/305 (21%), Positives = 120/305 (39%), Gaps = 58/305 (19%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGL----------------V 98
P+ YN +L KQW A +++++ + P T+G+ +
Sbjct: 188 PNSYAYNTLLKGLCSAKQWGDAEELVEEMTRNDSPPDDLTFGMLIHSFCQSGLVDRAMGI 247
Query: 99 MEVMLACG------KYNLVYEFFRKVQK-----------SYIPNALAYKVLVNTLWREGK 141
++ M CG YN + F ++ + P+ +Y ++ L R +
Sbjct: 248 LDRMSKCGCTPGAIVYNEIISCFAELGRVKEALHLFSCMPCKPDIFSYNAVLKGLCRAER 307
Query: 142 TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
++A + +M R+ + + LC G + AL +D++ K KP +Y+
Sbjct: 308 WEDAGELITEMVRKDCSPDEVTFNTVISFLCHKGLVDCALEVVDQMPKYGRKPDNFTYSA 367
Query: 202 LIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM----- 256
LI A + G +++A + M CSPN V ++K G +E+ +L EM
Sbjct: 368 LINAFSEQGCVEDALELLRSMP--CSPNTVCYKSVLKGLCRDGQWEDVGQLIGEMVRNDC 425
Query: 257 AEDSNHINREYD---KKGLV---------------IPDIYTFNTMLDACAAEKRWDDLEL 298
A D D ++GLV PD+ + ++L+ A R DD
Sbjct: 426 APDEMVFGLIIDCLCQRGLVDCGLEVLQEVPNYGCSPDVVMYTSLLNGFAEYGRVDDSLK 485
Query: 299 VYKRM 303
++K M
Sbjct: 486 LFKSM 490
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 22/169 (13%)
Query: 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV 197
R G D A+ V M V L L + LC+AG+ L + + + + V
Sbjct: 73 RLGDLDAALQLVGSMSEPPAVVPCTL---LIKKLCAAGR----LADAEGVLRASEAADAV 125
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
+ L+ +G + +A + + + ++VT N ++ Y G E+A L M
Sbjct: 126 DHNTLVAGYCRAGRLADAERMLRSLAASGAADVVTYNTLIAGYCRGGRLEDARLLVASMP 185
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306
P+ Y +NT+L + K+W D E + + M +
Sbjct: 186 P---------------APNSYAYNTLLKGLCSAKQWGDAEELVEEMTRN 219
>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
Length = 1060
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/311 (22%), Positives = 132/311 (42%), Gaps = 29/311 (9%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P V Y + L I E + +MR+ +G L P++ YN +
Sbjct: 225 FPTVVIYTILIRGLCGESRISEAESMFRTMRN-------SGML--------PNLYTYNTM 269
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SY 122
++ + + A + ++ G P+ T+G++++ + + +F +
Sbjct: 270 MDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGV 329
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+PN Y L++ + G EA+S ++E+ I+ Y L + LC + EEA
Sbjct: 330 VPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADG 389
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ ++ K P V+Y LI GN++ A + +QM + PN++T + ++ Y
Sbjct: 390 LLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYC 449
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ G E AM L+ EM KGL +PD+ + ++D + + ++K
Sbjct: 450 KAGKMEAAMGLYTEMV-----------IKGL-LPDVVAYTALIDGHFKDGNTKEAFRLHK 497
Query: 302 RMLHHGLHFNA 312
M GLH N
Sbjct: 498 EMQEAGLHPNV 508
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 134/310 (43%), Gaps = 37/310 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ + G + F + D M + KK F P +V+Y ++
Sbjct: 191 PNVVTYGTLIDGCCRQGDFLKAFRLFDEM--IEKKIF-------------PTVVIYTILI 235
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ A + + ++ G P+ TY +M+ E + + + +
Sbjct: 236 RGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLL 295
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVE---DMERRGIVGSAALYYDLARCLCSAGKCEEA 180
PN + + +L++ L KTDE VSA + DM G+V + +Y L C AG EA
Sbjct: 296 PNVVTFGILIDGLC---KTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEA 352
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVK 238
L +I K P V +Y+ LI+ ++ A + +M K F PN VT N ++
Sbjct: 353 LSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFL-PNAVTYNTLID 411
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
Y + G E+A+++ +M E KG + P+I TF+T++D + +
Sbjct: 412 GYCKEGNMEKAIEVCSQMTE-----------KG-IEPNIITFSTLIDGYCKAGKMEAAMG 459
Query: 299 VYKRMLHHGL 308
+Y M+ GL
Sbjct: 460 LYTEMVIKGL 469
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 97/215 (45%), Gaps = 19/215 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P+ V YN +++ + E A V Q+ ++G +P+ T+ +++ GK
Sbjct: 401 PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGL 460
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ + V K +P+ +AY L++ +++G T EA ++M+ G+ + L LC
Sbjct: 461 YTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCK 520
Query: 174 AGKCEEALM-------------QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
G+ +A+ + +++ + P V YT LIQ G I A+ F+
Sbjct: 521 DGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFS 580
Query: 221 QMKNFCS---PNLVTCNIMVKAYLEHGLFEEAMKL 252
M+ CS P++ TC ++++ + + M L
Sbjct: 581 DMR--CSGLRPDVFTCIVIIQGHFRAMHLRDVMML 613
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 93/217 (42%), Gaps = 15/217 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+ Y+ ++ + E A +LQ++K++G P+A TY +++ G E
Sbjct: 366 PDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEV 425
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ +K PN + + L++ + GK + A+ +M +G++ Y L
Sbjct: 426 CSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFK 485
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-------------N 220
G +EA ++ + P V + + LI G I +A +F N
Sbjct: 486 DGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTN 545
Query: 221 QM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
++ ++ CSPN V +++ G +A K F +M
Sbjct: 546 ELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDM 582
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 47/239 (19%), Positives = 85/239 (35%), Gaps = 39/239 (16%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PDIV L+AC + W+ ++ +G ++ + CG+
Sbjct: 746 QPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEIGTARR 805
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F QK + + ++ G+ +EA+ +M+ AR
Sbjct: 806 LFDGTQKK---DVTTWTSMIVGHALHGQAEEALQLFTEMKETN---------KRARKNKR 853
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--PNLV 231
G+ E +L+ P V++ G++ AC +G ++ F MK S P +
Sbjct: 854 NGEXESSLVL----------PNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRIS 903
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
MV GL EA + +M V P+ + T+L AC+ +
Sbjct: 904 HFGCMVDLLCRAGLLTEAYEFILKMP---------------VRPNAVVWRTLLGACSLQ 947
>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Cucumis sativus]
Length = 950
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 99/203 (48%), Gaps = 2/203 (0%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D++ YN +LN + + AF +LQ L + G YG ++ + +Y + ++
Sbjct: 267 DLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWY 326
Query: 116 RKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+K+ + I P+ + Y +++ L +EG+ EA++ + +M RG+ Y L + C
Sbjct: 327 QKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDM 386
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
G +EA +I K P +Y+ LI +G I A +IF +M+ C P++VT
Sbjct: 387 GYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTF 446
Query: 234 NIMVKAYLEHGLFEEAMKLFQEM 256
N ++ + EEA LF +M
Sbjct: 447 NSLINGLCKANRLEEARLLFYQM 469
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 122/277 (44%), Gaps = 27/277 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD+V Y +++ + + + A + ++ +G P+ Y +V+ + K
Sbjct: 194 LNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQ 253
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F K++ S + + Y VL+N + G D+A + ++ + + G + Y L L
Sbjct: 254 RLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGL 313
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
A + EEA M K+ + KP V+ YT +I+ G + A + +M + P+
Sbjct: 314 FRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDT 373
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAE------------------------DSNHINRE 266
+ N ++K + + G +EA L E+++ + HI +E
Sbjct: 374 ICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKE 433
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
+K G +P + TFN++++ R ++ L++ +M
Sbjct: 434 MEKLG-CLPSVVTFNSLINGLCKANRLEEARLLFYQM 469
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 142/318 (44%), Gaps = 22/318 (6%)
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+L+ W R V + ++ ++ +E + VLQ+LK K S+ + +++E
Sbjct: 84 SLKSWHLRCR---TVQDLIIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSE 140
Query: 105 CGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G E F ++ P+ A+ ++++ L R+ A++ M + +
Sbjct: 141 AGMDEKAVESFSLMRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVT 200
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L LC K ++AL+ D++ P + Y+ ++ + I +A +F++M+
Sbjct: 201 YGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMR 260
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ C+ +L+T N+++ + + G ++A L Q + +D + I + +
Sbjct: 261 ASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGH------------ILGVIGYGC 308
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHL 338
+++ +R+++ + Y++ML + + + MI S+ G+V LL E
Sbjct: 309 LINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERG 368
Query: 339 ARADRITPPALIKERFCN 356
R D I ALIK FC+
Sbjct: 369 LRPDTICYNALIKG-FCD 385
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D + PDI YN ++N + GAF + ++++ +G P + TYG +++ + G+
Sbjct: 519 DSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNE 578
Query: 110 LVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSA 148
E F + V+K +P + YK ++ RE A+S
Sbjct: 579 DALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSV 618
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 76/180 (42%), Gaps = 16/180 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPS--------------ATTYGLVME 100
P +V +N+++N + + E A + Q+ + +KPS + ++ME
Sbjct: 441 PSVVTFNSLINGLCKANRLEEARLLFYQM-EIVRKPSLFLRLSQGTDKVFDIASLQVMME 499
Query: 101 VMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+ G Y+ + V +P+ Y +L+N + G + A ++M+ +G +
Sbjct: 500 RLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMP 559
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219
+ Y L L AG+ E+AL +++ K P +Y ++ NI A ++
Sbjct: 560 DSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVW 619
>gi|147789723|emb|CAN67400.1| hypothetical protein VITISV_025966 [Vitis vinifera]
Length = 550
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 18/245 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDI+ YN ++ ++ + A +L ++ G P A TY ++ M G ++ F
Sbjct: 198 PDIITYNMLVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTILRCMFDHGGFDQAIGF 257
Query: 115 FRKVQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ + P L Y VL+ + + T +A+ +EDM G Y L C
Sbjct: 258 WKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDMAIEGCYPDIVTYNSLVNYTCK 317
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG---NIQNAAYIFNQMKNFCSPNL 230
GK E+ + + + P V+Y L+ + G + I N P +
Sbjct: 318 QGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSLCTHGYWDEVDEILLIMNMTSQ--PPTV 375
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT NI++ ++GL + A+ F +M + +PDI T+NT+L A E
Sbjct: 376 VTYNILINGLCKYGLLDRAINFFDQMVSHN------------CLPDIITYNTLLAALCKE 423
Query: 291 KRWDD 295
D+
Sbjct: 424 GMVDE 428
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 36/351 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y + L + G +K +++D M SL PD + YN +L
Sbjct: 198 PDIITYNMLVGGLCKKGLLKTAIELLDEM-SLSG--------------CPPDAITYNTIL 242
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA-CGKYNLVYEFFRKVQKSYI 123
++ A + ++G TY +++E++ CG + +
Sbjct: 243 RCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDMAIEGCY 302
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG---KCEEA 180
P+ + Y LVN ++GK ++ + ++ G+ + Y L LC+ G + +E
Sbjct: 303 PDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSLCTHGYWDEVDEI 362
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
L+ M+ + P VV+Y LI G + A F+QM + C P+++T N ++ A
Sbjct: 363 LLIMN---MTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAA 419
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ G+ +EA+ L + + P + T+N ++D A + + +
Sbjct: 420 LCKEGMVDEALHLLHSLNDTR------------CSPGLITYNIVIDGLAKKGCMEKAMGL 467
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVE-LLEITWEHLARADRITPPAL 349
Y M+ G + H + R VE L I E R RI A
Sbjct: 468 YGEMIERGFAPDDITHRTLFWGLFRLDLVEDALVILKEMNKRNQRIKNSAF 518
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 90/198 (45%), Gaps = 16/198 (8%)
Query: 116 RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
R+ Q Y P+ + L+ L + T+ A ++ M G + Y L LC G
Sbjct: 158 RRNQIPYFPSCIN---LIRGLIKLESTERATRVLKIMVMSGGIPDIITYNMLVGGLCKKG 214
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMKNFCSPNLVTCN 234
+ A+ +D++ P ++Y +++ D G A + +Q++ C L+T
Sbjct: 215 LLKTAIELLDEMSLSGCPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYT 274
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
++++ +H +AM++ ++MA + + PDI T+N++++ + +++
Sbjct: 275 VLIELVCKHCGTVQAMEVLEDMAIEGCY------------PDIVTYNSLVNYTCKQGKYE 322
Query: 295 DLELVYKRMLHHGLHFNA 312
D L+ +L HG+ N
Sbjct: 323 DTALIIYNLLSHGMGPNT 340
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 77/181 (42%), Gaps = 13/181 (7%)
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
V IP+ + Y +LV L ++G A+ +++M G A Y + RC+ G
Sbjct: 192 VMSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTILRCMFDHGGF 251
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQ-ACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIM 236
++A+ + +++YT LI+ C G +Q + + C P++VT N +
Sbjct: 252 DQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDMAIEGCYPDIVTYNSL 311
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
V + G +E+ + + + P+ T+NT+L + WD++
Sbjct: 312 VNYTCKQGKYEDTALIIYNLLSHG------------MGPNTVTYNTLLHSLCTHGYWDEV 359
Query: 297 E 297
+
Sbjct: 360 D 360
>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Cucumis sativus]
Length = 606
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 127/279 (45%), Gaps = 14/279 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+EPD+ +Y +++N + + AF + ++ ++ P+A TYG ++ G+
Sbjct: 293 IEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAE 352
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+Q K N + + L++ ++G DEA+ M+++G A +A
Sbjct: 353 MMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGF 412
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C + + EEA + + + P VVS++ LI N A +F M K +P++
Sbjct: 413 CRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSV 472
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N ++ Y + G EEA KL EM E +GL +PD YT+ +++D A
Sbjct: 473 VTYNAFIERYCKKGKMEEAYKLINEMQE-----------RGL-MPDTYTYTSLIDGERAS 520
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
D ++ M GL+ N + +I S+ G+ +
Sbjct: 521 GNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRAD 559
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 129/302 (42%), Gaps = 34/302 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL---------------- 46
PD Y SI + G++K F + D M R L + G L
Sbjct: 295 PDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMM 354
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ ++ + V++N +++ ++ + A + ++Q+G + A T ++
Sbjct: 355 VNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCR 414
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
+ +++ + PN +++ +L++ +E EA + ME++G S
Sbjct: 415 SNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVT 474
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y C GK EEA ++++ + P +YT LI SGN+ A +FN+M
Sbjct: 475 YNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMP 534
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ N+VT +++ + G +EA KL+ EM +K+G+V PD +++
Sbjct: 535 QLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEM-----------NKEGIV-PDDGIYSS 582
Query: 283 ML 284
++
Sbjct: 583 LI 584
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 120/283 (42%), Gaps = 25/283 (8%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D +E + + AV++ ++ + A ++ +L +G KPS TY ++ +
Sbjct: 185 DSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVG 244
Query: 110 LVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
V E ++K+ + N Y +L+ R K +EA ++M ++GI +Y +
Sbjct: 245 GVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSII 304
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCS 227
C G + A + D++ + P +Y LI +G ++ A + N M++
Sbjct: 305 NWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVD 364
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI---------------NREYDKKGL 272
N V N ++ Y + G+ +EA++L M + I NR + K L
Sbjct: 365 VNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRL 424
Query: 273 --------VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
V P++ +F+ ++D E+ + + ++K M G
Sbjct: 425 LLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKG 467
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P +V YNA + ++ + E A+ ++ +++++G P TY +++ A G + E
Sbjct: 470 PSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALEL 529
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F ++ Q N + Y V+++ L ++G+ DEA ++M + GIV +Y L L
Sbjct: 530 FNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHK 589
Query: 174 AG 175
G
Sbjct: 590 VG 591
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 13/199 (6%)
Query: 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL 195
L R G + V + M GI + + LC G+ A MD++ KP
Sbjct: 167 LKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPS 226
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
V++Y L+ ++ ++ I + M KN N+ T ++++ Y EEA KLF
Sbjct: 227 VITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFD 286
Query: 255 EMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKR 314
EM KKG + PD+Y + ++++ +++ M L NA
Sbjct: 287 EML-----------KKG-IEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYT 334
Query: 315 HLRMILDASRAGKVELLEI 333
+ +I A +AG+++ E+
Sbjct: 335 YGALINGACKAGEMKAAEM 353
>gi|224087130|ref|XP_002308078.1| predicted protein [Populus trichocarpa]
gi|222854054|gb|EEE91601.1| predicted protein [Populus trichocarpa]
Length = 373
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 122/278 (43%), Gaps = 20/278 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P +VVYN ++N CV+ + + A V ++ + KP T+ +++ + L E
Sbjct: 73 PSVVVYNILINGCVKCGEHDRAIGVYDRMLKDRVKPDVFTFNILISSYCRNYMFELALEL 132
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
FR++ +K PN +++ L+ +RE K +E V V +M G S+ + L LC
Sbjct: 133 FREMKEKGCSPNVVSFNTLIKGFFRERKFEEGVKMVYEMIDLGCEISSVTFEILVDGLCK 192
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+ EA + + P GL+ A + +++ +N P++++
Sbjct: 193 EGQASEACGLLIDFTRKGVLPRKFDSFGLVDMLCKKRMADRALEVLDELWRNGNIPSMIS 252
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
C +++ + G EEA L + M +++ ++PDI TFN +L E R
Sbjct: 253 CTTLIEGLRKSGRREEAFGLMERMLKEN------------IVPDIMTFNCLLHDLCNEGR 300
Query: 293 WDD---LELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
D L L+ R GL + + ++ R GK
Sbjct: 301 TVDGNKLRLLASR---KGLDVDEMTYDILVSGCIREGK 335
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 122/259 (47%), Gaps = 18/259 (6%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY--- 108
R++PD+ +N ++++ R +E A + +++K++G P+ ++ +++ K+
Sbjct: 105 RVKPDVFTFNILISSYCRNYMFELALELFREMKEKGCSPNVVSFNTLIKGFFRERKFEEG 164
Query: 109 -NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+VYE + +++ +++LV+ L +EG+ EA + D R+G++ + L
Sbjct: 165 VKMVYEM---IDLGCEISSVTFEILVDGLCKEGQASEACGLLIDFTRKGVLPRKFDSFGL 221
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227
LC + AL +D++ + N P ++S T LI+ SG + A F M+
Sbjct: 222 VDMLCKKRMADRALEVLDELWRNGNIPSMISCTTLIEGLRKSGRREEA---FGLMERMLK 278
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
N+V +IM L H L E + D N + +KGL + D T++ ++ C
Sbjct: 279 ENIVP-DIMTFNCLLHDLCNEGRTV------DGNKLRLLASRKGLDV-DEMTYDILVSGC 330
Query: 288 AAEKRWDDLELVYKRMLHH 306
E + + E + ML
Sbjct: 331 IREGKRKEGEALVDEMLDK 349
>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like, partial [Cucumis sativus]
Length = 602
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 127/279 (45%), Gaps = 14/279 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+EPD+ +Y +++N + + AF + ++ ++ P+A TYG ++ G+
Sbjct: 289 IEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAE 348
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+Q K N + + L++ ++G DEA+ M+++G A +A
Sbjct: 349 MMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGF 408
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C + + EEA + + + P VVS++ LI N A +F M K +P++
Sbjct: 409 CRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSV 468
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N ++ Y + G EEA KL EM E +GL +PD YT+ +++D A
Sbjct: 469 VTYNAFIERYCKKGKMEEAYKLINEMQE-----------RGL-MPDTYTYTSLIDGERAS 516
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
D ++ M GL+ N + +I S+ G+ +
Sbjct: 517 GNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRAD 555
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 129/302 (42%), Gaps = 34/302 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL---------------- 46
PD Y SI + G++K F + D M R L + G L
Sbjct: 291 PDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMM 350
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ ++ + V++N +++ ++ + A + ++Q+G + A T ++
Sbjct: 351 VNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCR 410
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
+ +++ + PN +++ +L++ +E EA + ME++G S
Sbjct: 411 SNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVT 470
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y C GK EEA ++++ + P +YT LI SGN+ A +FN+M
Sbjct: 471 YNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMP 530
Query: 224 NF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ N+VT +++ + G +EA KL+ EM +K+G+V PD +++
Sbjct: 531 QLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEM-----------NKEGIV-PDDGIYSS 578
Query: 283 ML 284
++
Sbjct: 579 LI 580
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 120/283 (42%), Gaps = 25/283 (8%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D +E + + AV++ ++ + A ++ +L +G KPS TY ++ +
Sbjct: 181 DSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVG 240
Query: 110 LVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
V E ++K+ + N Y +L+ R K +EA ++M ++GI +Y +
Sbjct: 241 GVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSII 300
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCS 227
C G + A + D++ + P +Y LI +G ++ A + N M++
Sbjct: 301 NWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVD 360
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI---------------NREYDKKGL 272
N V N ++ Y + G+ +EA++L M + I NR + K L
Sbjct: 361 VNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRL 420
Query: 273 --------VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
V P++ +F+ ++D E+ + + ++K M G
Sbjct: 421 LLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKG 463
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P +V YNA + ++ + E A+ ++ +++++G P TY +++ A G + E
Sbjct: 466 PSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALEL 525
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F ++ Q N + Y V+++ L ++G+ DEA ++M + GIV +Y L L
Sbjct: 526 FNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHK 585
Query: 174 AG 175
G
Sbjct: 586 VG 587
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 13/199 (6%)
Query: 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL 195
L R G + V + M GI + + LC G+ A MD++ KP
Sbjct: 163 LKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPS 222
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
V++Y L+ ++ ++ I + M KN N+ T ++++ Y EEA KLF
Sbjct: 223 VITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFD 282
Query: 255 EMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKR 314
EM KKG + PD+Y + ++++ +++ M L NA
Sbjct: 283 EML-----------KKG-IEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYT 330
Query: 315 HLRMILDASRAGKVELLEI 333
+ +I A +AG+++ E+
Sbjct: 331 YGALINGACKAGEMKAAEM 349
>gi|297743431|emb|CBI36298.3| unnamed protein product [Vitis vinifera]
Length = 641
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 118/253 (46%), Gaps = 14/253 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PDIV YN +++ R + A +L+Q +G P+ +Y ++ G Y+
Sbjct: 322 KPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASN 381
Query: 114 FFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ ++ ++ + P+ + Y LV+ L G+ D A++ E M RG+ A +Y L LC
Sbjct: 382 WLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLC 441
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCSPNLV 231
K A + + ++ + P Y L+ + +GN+ A +F ++ +P +V
Sbjct: 442 KKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIV 501
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
N M+K Y + G+ ++AM M KK + PD +T++T++D +
Sbjct: 502 GYNAMIKGYCKFGMMKDAMACINRM------------KKRHLAPDEFTYSTVIDGYVKQH 549
Query: 292 RWDDLELVYKRML 304
D + +++ M+
Sbjct: 550 DLDGAQKMFREMV 562
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 85/383 (22%), Positives = 153/383 (39%), Gaps = 37/383 (9%)
Query: 4 YPDTVAYRSIAVTLGQAGHIK--ELFDVIDSMRSLPKKKFKTGTLE--------RWDPRL 53
+PD +A S+ L + G I+ F I + K K G LE RW
Sbjct: 162 FPDVIACNSLLNMLVKLGRIEIARKFTCI-----MVKGLCKEGKLEEGRKLIEDRWGQGC 216
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
P+I+ YN +++ ++ E A + +LK +G P+ TYG ++ G + +
Sbjct: 217 IPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDR 276
Query: 114 FFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++ + N Y +++ ++ G +AV +E M G Y L C
Sbjct: 277 LLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSC 336
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMKNFCSPNLV 231
GK EA +++ P SYT LI A C G + + ++ + P+LV
Sbjct: 337 RDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLV 396
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T +V + G + A+ + ++M E V PD +N ++ +
Sbjct: 397 TYGALVHGLVVAGEVDVALTIREKMLERG------------VFPDAGIYNILMSGLCKKF 444
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLEITWEHLARADRITPP 347
+ +L+ ML + +A + ++ R G ++ L E+T E +
Sbjct: 445 KLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYN 504
Query: 348 ALIKERFCNRLENKDYGSAISCL 370
A+IK +C KD A++C+
Sbjct: 505 AMIK-GYCKFGMMKD---AMACI 523
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 6/182 (3%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD+V Y A+++ V + + A + +++ ++G P A Y ++M + C K+ L
Sbjct: 392 KPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGL--CKKFKLPAA 449
Query: 114 ---FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ +S +P+A Y LV+ R G DEA E +G+ Y + +
Sbjct: 450 KLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKG 509
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
C G ++A+ ++++ K P +Y+ +I + ++ A +F +M K C PN
Sbjct: 510 YCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPN 569
Query: 230 LV 231
++
Sbjct: 570 VM 571
>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/320 (20%), Positives = 139/320 (43%), Gaps = 38/320 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
Y D V Y ++ + G ++E F++++SM D L+P + YNA+
Sbjct: 150 YADMVTYNTLIGAYCREGLLEEAFEIMNSMA---------------DKGLKPSLFTYNAI 194
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSY 122
+N ++ ++ A +L ++ G P TTY ++ ++ E F + +++
Sbjct: 195 INGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGV 254
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P+ +++ L+ R D+A+ DM++ G+V +Y L C G EAL
Sbjct: 255 VPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALK 314
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
D++ + V++Y ++ + +A +F++M + P+ T ++ +
Sbjct: 315 IRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHC 374
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA-------AEKRWD 294
+ G +A+ LF M + + + PDI +NT++D A + WD
Sbjct: 375 QDGNMTKALSLFGTMTQRN------------IKPDIVAYNTLIDGFCKVGEMEKASELWD 422
Query: 295 DL--ELVYKRMLHHGLHFNA 312
+ ++ + +G+ NA
Sbjct: 423 GMISRKIFPNHITYGILINA 442
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 114/256 (44%), Gaps = 14/256 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D++ YN +LN + K A + ++ ++G P T+ ++ G F
Sbjct: 327 DVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLF 386
Query: 116 RKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ Q++ P+ +AY L++ + G+ ++A + M R I + Y L CS
Sbjct: 387 GTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSV 446
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTC 233
G EA D + + KP +V+ +I+ SG+ A +M +P+ ++
Sbjct: 447 GHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISY 506
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N ++ ++ ++A +M +K+GL +PDI T+N +++ + R
Sbjct: 507 NTLINGFVREDNMDKAFLWINKM-----------EKEGL-LPDIITYNVVMNGFCRQGRM 554
Query: 294 DDLELVYKRMLHHGLH 309
+ ELV ++M+ G++
Sbjct: 555 QEAELVLRKMIEKGIN 570
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 106/253 (41%), Gaps = 14/253 (5%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
+V++ ++ V+ ++ + L+ +G S ++ ++ L +E R+
Sbjct: 49 LVFDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHRE 108
Query: 118 VQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
V +S I N ++VN L ++GK D+ S + +ME GI Y L C G
Sbjct: 109 VVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGL 168
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNI 235
EEA M+ + KP + +Y +I G A I +M N SP+ T N
Sbjct: 169 LEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNT 228
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
++ F EA ++F EM V+PD+ +F++++ + + D
Sbjct: 229 LLVESCRRDNFSEAKEIFGEMLRQG------------VVPDLVSFSSLIAVFSRNRHLDQ 276
Query: 296 LELVYKRMLHHGL 308
+ ++ M GL
Sbjct: 277 ALVYFRDMKKFGL 289
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 95/219 (43%), Gaps = 16/219 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD VAY ++ + G +++ ++ D M + +K F P+ + Y ++
Sbjct: 396 PDIVAYNTLIDGFCKVGEMEKASELWDGM--ISRKIF-------------PNHITYGILI 440
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYI 123
NA AF + + ++G KP+ T V++ G + EF R + K
Sbjct: 441 NAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVA 500
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++Y L+N RE D+A + ME+ G++ Y + C G+ +EA +
Sbjct: 501 PDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELV 560
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+ K+ + P +YT LI + N+ A ++M
Sbjct: 561 LRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEM 599
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 21/174 (12%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLERWDP 51
+P+ + Y + GH+ E F + D M ++ K ++G + D
Sbjct: 430 FPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADE 489
Query: 52 RL--------EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
L PD + YN ++N VR + AF + +++++G P TY +VM
Sbjct: 490 FLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFC 549
Query: 104 ACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
G+ RK ++K P+ Y L+N + +EA ++M +RG
Sbjct: 550 RQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRG 603
>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g02150
gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 761
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 154/349 (44%), Gaps = 21/349 (6%)
Query: 29 VIDSMRSLPKKKFKTGTLERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG 87
+ID M + G E R L PD V YN++++ + + + +++K
Sbjct: 268 MIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 327
Query: 88 QKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAV 146
+P TY ++ GK + EF+R+++ + + PN ++Y LV+ +EG +A+
Sbjct: 328 CEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAI 387
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206
DM R G+V + Y L C G +A +++ +V + VV+YT LI
Sbjct: 388 KFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGL 447
Query: 207 LDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
D+ ++ A +F +M PNL + N ++ +++ + A++L E+
Sbjct: 448 CDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNEL--------- 498
Query: 266 EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRA 325
K + PD+ + T + + ++ + ++V M G+ N+ + ++ ++
Sbjct: 499 ---KGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKS 555
Query: 326 GK----VELLEITWEHLARADRITPPALIKERFCNRLENK--DYGSAIS 368
G + LL+ E +T LI N+L +K DY + IS
Sbjct: 556 GNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRIS 604
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 124/282 (43%), Gaps = 17/282 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P V++A+ + + E A ++K+ P + ++ GK + V F
Sbjct: 190 PGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRF 249
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F+ + P Y ++++ + +EG + A E+M+ RG+V Y +
Sbjct: 250 FKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGK 309
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVT 232
G+ ++ + +++ + +P V++Y LI G + + +MK N PN+V+
Sbjct: 310 VGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVS 369
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+ +V A+ + G+ ++A+K + +M + GLV P+ YT+ +++DA
Sbjct: 370 YSTLVDAFCKEGMMQQAIKFYVDMR-----------RVGLV-PNEYTYTSLIDANCKIGN 417
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMI---LDASRAGKVELL 331
D + ML G+ +N + +I DA R + E L
Sbjct: 418 LSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEEL 459
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/306 (19%), Positives = 128/306 (41%), Gaps = 28/306 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V+Y ++ + G +++ MR + L P+ Y +++
Sbjct: 365 PNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVG---------------LVPNEYTYTSLI 409
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YI 123
+A + AF + ++ Q G + + TY +++ + + E F K+ + I
Sbjct: 410 DANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVI 469
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN +Y L++ + D A+ + +++ RGI LY LCS K E A +
Sbjct: 470 PNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVV 529
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
M+++ + K + YT L+ A SGN ++ ++MK +VT +++ +
Sbjct: 530 MNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCK 589
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+ L +A+ F ++ D + + F M+D + + + ++++
Sbjct: 590 NKLVSKAVDYFNRISNDFG-----------LQANAAIFTAMIDGLCKDNQVEAATTLFEQ 638
Query: 303 MLHHGL 308
M+ GL
Sbjct: 639 MVQKGL 644
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/203 (18%), Positives = 93/203 (45%), Gaps = 3/203 (1%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++ + ++Y +++A + +L ++K+ + + T+ ++++ + +
Sbjct: 538 IKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAV 597
Query: 113 EFFRKVQKSY--IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
++F ++ + NA + +++ L ++ + + A + E M ++G+V Y L
Sbjct: 598 DYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDG 657
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
G EAL DK+ ++ K +++YT L+ +Q A +M P+
Sbjct: 658 NFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPD 717
Query: 230 LVTCNIMVKAYLEHGLFEEAMKL 252
V C ++K + E G +EA++L
Sbjct: 718 EVLCISVLKKHYELGCIDEAVEL 740
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/221 (20%), Positives = 87/221 (39%), Gaps = 15/221 (6%)
Query: 111 VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
V++ + +P + L + L G +EA+ M+R + L
Sbjct: 177 VFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHR 236
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
GK ++ + +P V +Y +I G+++ A +F +MK P+
Sbjct: 237 FAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPD 296
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CA 288
VT N M+ + + G ++ + F+EM K PD+ T+N +++ C
Sbjct: 297 TVTYNSMIDGFGKVGRLDDTVCFFEEM------------KDMCCEPDVITYNALINCFCK 344
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
K LE Y+ M +GL N + ++ + G ++
Sbjct: 345 FGKLPIGLEF-YREMKGNGLKPNVVSYSTLVDAFCKEGMMQ 384
>gi|255561941|ref|XP_002521979.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538783|gb|EEF40383.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 496
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 129/299 (43%), Gaps = 36/299 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y + L + G +K D+++ M SL PD+V YN ++
Sbjct: 166 PDVITYNMMVGGLCKRGKLKSAIDLLEDM-SLSG--------------CPPDVVTYNTII 210
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA-CGKYNLVYEFFRKVQKSYI 123
++ A ++ ++G P TY +++E++ CG + +
Sbjct: 211 RCMFHNANFDQAVRFWKEQLRRGCPPYLITYTILIELVCKHCGTVRAMEVLEDMAIEGCY 270
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y LVN ++GK ++A + +M G+ +A Y L LCS G +E
Sbjct: 271 PDLVTYNSLVNFTCKQGKYEDAALIIINMLSHGMEPNAITYNTLLHSLCSCGLWDEVDEI 330
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + + ++ P VV+Y LI SG + A F+QM C P++VT N ++ A +
Sbjct: 331 LTVMKETSHPPTVVTYNTLINGLCKSGLVNRAIDFFHQMVYENCLPDIVTYNTLLGALCK 390
Query: 243 H-------GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
FE+A+++ +EM + + IN Y + +++D K+ D
Sbjct: 391 EECWMSPSSQFEDAVEILREMGKRDHRINS------------YAYRSVIDGLCNNKKTD 437
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 99/211 (46%), Gaps = 9/211 (4%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V YN+++N ++ ++E A ++ + G +P+A TY ++ + +CG ++ V E
Sbjct: 271 PDLVTYNSLVNFTCKQGKYEDAALIIINMLSHGMEPNAITYNTLLHSLCSCGLWDEVDEI 330
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+++ S+ P + Y L+N L + G + A+ M + Y L LC
Sbjct: 331 LTVMKETSHPPTVVTYNTLINGLCKSGLVNRAIDFFHQMVYENCLPDIVTYNTLLGALCK 390
Query: 174 -------AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNF 225
+ + E+A+ + ++ K ++ +Y +I ++ A + M +
Sbjct: 391 EECWMSPSSQFEDAVEILREMGKRDHRINSYAYRSVIDGLCNNKKTDIAIQVLEIMISSR 450
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
C P+ + ++ + + G+ EEA +L Q++
Sbjct: 451 CKPDEEIYSALINSLADAGMMEEANELRQKL 481
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 80/187 (42%), Gaps = 13/187 (6%)
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
V +P+ + Y ++V L + GK A+ +EDM G Y + RC+
Sbjct: 160 VMSGGVPDVITYNMMVGGLCKRGKLKSAIDLLEDMSLSGCPPDVVTYNTIIRCMFHNANF 219
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQ-ACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIM 236
++A+ + + P +++YT LI+ C G ++ + + C P+LVT N +
Sbjct: 220 DQAVRFWKEQLRRGCPPYLITYTILIELVCKHCGTVRAMEVLEDMAIEGCYPDLVTYNSL 279
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
V + G +E+A + M P+ T+NT+L + + WD++
Sbjct: 280 VNFTCKQGKYEDAALIIINMLSHGME------------PNAITYNTLLHSLCSCGLWDEV 327
Query: 297 ELVYKRM 303
+ + M
Sbjct: 328 DEILTVM 334
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 101/230 (43%), Gaps = 23/230 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD V Y S+ + G ++ +I +M S +EP+ + YN +
Sbjct: 270 YPDLVTYNSLVNFTCKQGKYEDAALIIINMLS---------------HGMEPNAITYNTL 314
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSY 122
L++ W+ +L +K+ P+ TY ++ + G N +FF + V ++
Sbjct: 315 LHSLCSCGLWDEVDEILTVMKETSHPPTVVTYNTLINGLCKSGLVNRAIDFFHQMVYENC 374
Query: 123 IPNALAYKVLVNTLWRE-------GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
+P+ + Y L+ L +E + ++AV + +M +R ++ Y + LC+
Sbjct: 375 LPDIVTYNTLLGALCKEECWMSPSSQFEDAVEILREMGKRDHRINSYAYRSVIDGLCNNK 434
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
K + A+ ++ + KP Y+ LI + D+G ++ A + ++ N
Sbjct: 435 KTDIAIQVLEIMISSRCKPDEEIYSALINSLADAGMMEEANELRQKLINI 484
>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
Length = 915
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 116/271 (42%), Gaps = 14/271 (5%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
V Y ++ + +++E V+ ++ + G P+ ++E + GK ++ +
Sbjct: 297 VTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNR 356
Query: 118 VQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
V+K +P+ Y L+N+L ++GK DEA ++M +G+ + Y L C GK
Sbjct: 357 VKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGK 416
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNI 235
+ A+ + K+ K V Y LI GN+ A F++M P +V+
Sbjct: 417 LDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTS 476
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
++ Y G EA +L+ EM KG + P+ YTF T++ A R D
Sbjct: 477 LISGYCNKGKLHEAFRLYHEMT-----------GKG-IAPNTYTFTTLISALFRANRMTD 524
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
++ ML + N + MI + G
Sbjct: 525 AFRLFDEMLEQNMMPNEVTYNVMIEGHCKEG 555
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/305 (20%), Positives = 126/305 (41%), Gaps = 28/305 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT YR + +L G + E ID L ++ FK + Y+A+L
Sbjct: 574 PDTYTYRPLISSLCSTGRVCEAKKFIDD---LHREHFKLNEM------------CYSALL 618
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + A V +++ ++G Y ++++ + + V+ + + +
Sbjct: 619 HGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLR 678
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y +++ + G +A + M G + Y L LC AG ++A +
Sbjct: 679 PDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELL 738
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
++ + P V+Y + G+++ A + N M N V+ NI+V+ + +
Sbjct: 739 WKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLKGLLANTVSYNILVRGFCKL 798
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G EEA KL EM +++ + PD T++T++ C D + M
Sbjct: 799 GRVEEATKLLDEMIDNA------------IFPDCITYSTIIYQCCRRGNLDGAIEFWDTM 846
Query: 304 LHHGL 308
L+ GL
Sbjct: 847 LNKGL 851
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/294 (19%), Positives = 129/294 (43%), Gaps = 14/294 (4%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D L+P +V Y ++++ + + AF + ++ +G P+ T+ ++ +
Sbjct: 461 EMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRAN 520
Query: 107 KYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ + F + ++++ +PN + Y V++ +EG T +A + M ++G+V Y
Sbjct: 521 RMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYR 580
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KN 224
L LCS G+ EA +D + + K + Y+ L+ G +++A + +M K
Sbjct: 581 PLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKR 640
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
+LV +++ ++ L + M +D++ + PD + +M+
Sbjct: 641 GVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNM----------HDQR--LRPDKVIYTSMI 688
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
D + ++ M+ G N + +I + +AG ++ E+ W+ +
Sbjct: 689 DGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEM 742
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 112/257 (43%), Gaps = 14/257 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P + VLN + ++ + + ++ G +P Y V+ +
Sbjct: 189 LMPQVRTLGEVLNGLAKIRRVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKAK 248
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
E ++++ S + N + Y VL++ L + + EAV + ++G+ S Y L LC
Sbjct: 249 EMIQRMESSDL-NVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLC 307
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLV 231
+ E MD++ ++ P + + L++ G + +A + N++K + P+L
Sbjct: 308 KVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLF 367
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
N ++ + + G F+EA LF+EM E KGL D+ T++ ++D+
Sbjct: 368 VYNALINSLCKDGKFDEAELLFKEMGE-----------KGLCANDV-TYSILIDSFCRRG 415
Query: 292 RWDDLELVYKRMLHHGL 308
+ D +M+ G+
Sbjct: 416 KLDTAIHFLGKMIMAGI 432
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 16/229 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ +AG +K+ F + D M D P+IV Y ++
Sbjct: 679 PDKVIYTSMIDGYSKAGSVKKAFGIWDIM---------------IDEGCTPNIVTYTTLI 723
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
N + + A + +++ P+ TY ++ + G + + K +
Sbjct: 724 NELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLKGLLA 783
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N ++Y +LV + G+ +EA +++M I Y + C G + A+
Sbjct: 784 NTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFW 843
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
D + KP ++Y LI C +G + A + + M + PN T
Sbjct: 844 DTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQAT 892
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/393 (18%), Positives = 145/393 (36%), Gaps = 77/393 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P A S+ L + G + + FD+++ ++ K G + P + VYNA++
Sbjct: 329 PTEAALSSLVEGLRRKGKVVDAFDLVNRVK-------KVGAM--------PSLFVYNALI 373
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK------- 117
N+ + +++ A + +++ ++G + TY ++++ GK + F K
Sbjct: 374 NSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIK 433
Query: 118 -----------------------------VQKSYIPNALAYKVLVNTLWREGKTDEAVSA 148
+ K P ++Y L++ +GK EA
Sbjct: 434 ITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRL 493
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+M +GI + + L L A + +A D++ + P V+Y +I+
Sbjct: 494 YHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCK 553
Query: 209 SGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN--- 264
GN A + NQM + P+ T ++ + G EA K ++ + +N
Sbjct: 554 EGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMC 613
Query: 265 ---------------------REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
RE K+G V D+ + ++D E+ + + K M
Sbjct: 614 YSALLHGYCKEGRLRDALGVCREMVKRG-VDMDLVCYAVLIDGTIKEQDTSAVFGLLKNM 672
Query: 304 LHHGLHFNAKRHLRMILDASRAGKVELLEITWE 336
L + + MI S+AG V+ W+
Sbjct: 673 HDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWD 705
>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
Length = 845
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 113/257 (43%), Gaps = 14/257 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+P++ YNA++ + A +L +++ G P A TY L++ G +
Sbjct: 356 KPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFR 415
Query: 114 FFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R ++ I + Y L+N L ++G+TD+A S + +E RGI +A + L LC
Sbjct: 416 LLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLC 475
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQ-ACLDSGNIQNAAYIFNQMKNFCSPNLV 231
+GK + A ++K+ P +Y+ I+ C G+ + ++I ++ P+ V
Sbjct: 476 KSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTV 535
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
I++ L+ + + + EM + PD+ T+ T + A E
Sbjct: 536 NYTIVIHKLLKERNYGLVARTWGEMVSSGCN------------PDVVTYTTSMRAYCIEG 583
Query: 292 RWDDLELVYKRMLHHGL 308
R ++ E V M +G+
Sbjct: 584 RLNEAENVLMEMSKNGV 600
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 70/337 (20%), Positives = 135/337 (40%), Gaps = 71/337 (21%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V+Y ++ L +AG I E ++ M +PD+ +Y A++
Sbjct: 222 DVVSYATLIEGLCEAGRIDEAVELFGEMD-------------------QPDMHMYAALVK 262
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIP 124
++ E +L+++K+ G +PS Y V++ K E +++ +K P
Sbjct: 263 GLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAP 322
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ ++N +EG+ +A+ +E M+ RG
Sbjct: 323 CVVTCTAVINAYCKEGRMSDALRVLELMKLRGC--------------------------- 355
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
KP V +Y L+Q + G + A + N+M+ +P+ VT N++++
Sbjct: 356 --------KPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCID 407
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G E A +L + M D +I D YT+N +++A + R D ++ +
Sbjct: 408 GHIESAFRLLRLMEGDG------------LIADQYTYNALINALCKDGRTDQACSLFDSL 455
Query: 304 LHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
G+ NA +I ++GK +I W+ L +
Sbjct: 456 ETRGIKPNAVTFNSLINGLCKSGKA---DIAWKFLEK 489
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 114/273 (41%), Gaps = 31/273 (11%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD Y++ + + K + + ++ Q+ KPS Y +V+ +L Y LV
Sbjct: 497 PDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVART 556
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ ++ S P+ + Y + EG+ +EA + + +M + G+ Y L S
Sbjct: 557 WGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHAS 616
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACL-----------------DSGNIQNAA 216
G+ + A+ + ++ VA+ P +Y L++ + + + +
Sbjct: 617 IGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVF 676
Query: 217 YIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
+F+ MK N PN T + +++ + E G EEA L M EDS +N
Sbjct: 677 GLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNE---------- 726
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
DIYT ++ KR+ D ++ M+ HG
Sbjct: 727 DIYT--ALVTCFCKSKRYLDAWVLVCSMIQHGF 757
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 94/209 (44%), Gaps = 21/209 (10%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML------------ 103
D + YN +++ Q + A +L+Q+ P+ TY +++ ++
Sbjct: 603 DTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLT 662
Query: 104 ACGKYNL-----VYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
G + V+ F ++K+ ++PN+ Y ++ +G+T+EA S V M+ I
Sbjct: 663 PAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSI 722
Query: 158 VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217
+ +Y L C C + + +A + + + + P ++SY L+ + G A
Sbjct: 723 SLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKE 782
Query: 218 IF--NQMKNFCSPNLVTCNIMVKAYLEHG 244
IF ++ K++ SP+ + +++ ++ G
Sbjct: 783 IFMNSRWKDY-SPDEIVWKVIIDGLIKKG 810
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 53/300 (17%)
Query: 90 PSATTYGLVMEVMLACGKYNLVYEF---FRKVQKSYIPNALAYKVLVNTLWREGKTDEAV 146
P+A TY V+ + C + +L V+ + P+A + L+ R + D A
Sbjct: 151 PTAPTYNAVIRSL--CRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVAR 208
Query: 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA-------------------------- 180
+ M RG Y L LC AG+ +EA
Sbjct: 209 DLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQPDMHMYAALVKGLCNAE 268
Query: 181 -----LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCN 234
L+ + ++ ++ +P +Y ++ + A + +M + +P +VTC
Sbjct: 269 RGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCT 328
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
++ AY + G +A+++ + M K P+++T+N ++ E +
Sbjct: 329 AVINAYCKEGRMSDALRVLELM------------KLRGCKPNVWTYNALVQGFCNEGKVH 376
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLEITWEHLARADRITPPALI 350
+ +M G++ +A + +I G +E LL + AD+ T ALI
Sbjct: 377 KAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALI 436
>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1429
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 129/300 (43%), Gaps = 16/300 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PDI+ YN +++AC R E A V ++ +P TY ++ V CG
Sbjct: 278 LRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYGRCGFSGKAE 337
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F++++ K Y P+A+ Y L+ REG D+ +M + G + Y +
Sbjct: 338 QLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHMY 397
Query: 172 CSAGKCEEALMQMDKICKVANK-PLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPN 229
G+ AL Q+ + K++ + P ++YT LI + + + AA + ++M N P
Sbjct: 398 GKQGQHGLAL-QLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSEMLNIGVKPT 456
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
L T + ++ Y G EA + F M ++ + PD ++ MLD
Sbjct: 457 LRTYSALICGYARAGQRLEAEETFDCM------------RRSGIRPDQLAYSVMLDVFLR 504
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPAL 349
++Y+ M+ G+ + + M+ + R KVE ++ + + P A+
Sbjct: 505 FDEATKAMMLYREMVRDGITPDPTVYGAMLRNLGRENKVEDIQRIIRDMEEVCGMNPQAI 564
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 126/301 (41%), Gaps = 29/301 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y ++ + +++E V D M + +PD+ YNA++
Sbjct: 280 PDIITYNTLISACSRESNLEEAVKVFDDMEA---------------HYCQPDLWTYNAMI 324
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ R A + ++L+ +G P A TY ++ G + V E + VQ +I
Sbjct: 325 SVYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFI 384
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y +++ ++G+ A+ DM+ G A Y L L A K EA
Sbjct: 385 RDEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANV 444
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
M ++ + KP + +Y+ LI +G A F+ M ++ P+ + ++M+ +L
Sbjct: 445 MSEMLNIGVKPTLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVFLR 504
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+AM L++EM D + PD + ML E + +D++ + +
Sbjct: 505 FDEATKAMMLYREMVRDG------------ITPDPTVYGAMLRNLGRENKVEDIQRIIRD 552
Query: 303 M 303
M
Sbjct: 553 M 553
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 109/245 (44%), Gaps = 16/245 (6%)
Query: 68 VRRKQWEGAFWVLQQLK-QQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNA 126
V ++ W+ A V + L + P+A ++ V+ + L E F + + +
Sbjct: 151 VGQENWQRALEVFEWLNLRHWYSPNARMLATILAVLGKANQEALAVEIFIRAESTVDNTV 210
Query: 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL--ARCLCSAGKCEEALMQM 184
Y ++ R G+ ++ ++ M RG + L AR A A+ +
Sbjct: 211 QVYNAMMGVYARTGRFNKVQGMLDLMRERGCEPDLVSFNTLINARLKAGAMTPNVAIELL 270
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEH 243
+++ + +P +++Y LI AC N++ A +F+ M+ ++C P+L T N M+ Y
Sbjct: 271 NEVRRSGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYGRC 330
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G +A +LF+E+ + KG PD T+N++L A A E D ++ + M
Sbjct: 331 GFSGKAEQLFKEL-----------ESKG-YFPDAVTYNSLLYAFAREGNVDKVKEICNEM 378
Query: 304 LHHGL 308
+ G
Sbjct: 379 VQMGF 383
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/268 (19%), Positives = 105/268 (39%), Gaps = 27/268 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD V Y S+ + G++ ++ ++ + M + G + D + YN +
Sbjct: 349 FPDAVTYNSLLYAFAREGNVDKVKEICNEM-------VQMGFIR--------DEMTYNTI 393
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE----FFRKVQ 119
++ ++ Q A + + +K G+ P A TY ++++ + GK N + E +
Sbjct: 394 IHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLID---SLGKANKMVEAANVMSEMLN 450
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
P Y L+ R G+ EA + M R GI Y + + +
Sbjct: 451 IGVKPTLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVFLRFDEATK 510
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPN-LVTCNIMVK 238
A+M ++ + P Y +++ +++ I M+ C N +I+VK
Sbjct: 511 AMMLYREMVRDGITPDPTVYGAMLRNLGRENKVEDIQRIIRDMEEVCGMNPQAIASILVK 570
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINRE 266
+E+A + + S+ I+ E
Sbjct: 571 GE----CYEDAAGMLRLAISGSDEIDSE 594
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/215 (16%), Positives = 91/215 (42%), Gaps = 2/215 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P + N +L A + + E + V Q+++ G + S ++ L+++ +
Sbjct: 803 PTVDSINGLLQALIVDGRLEELYVVTQEIQDMGFQISKSSILLILDAFARVSNIAEAKKI 862
Query: 115 FRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ ++ + Y P Y++++ L + + + + V +ME G +++ + R
Sbjct: 863 YQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEMEEAGFRPDLSIWNSMLRLYTG 922
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLI-QACLDSGNIQNAAYIFNQMKNFCSPNLVT 232
+ + +I + +P +Y LI C D + + + + P L T
Sbjct: 923 IDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEGCSLMHEMRRIGLEPKLDT 982
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
++ A+ + L +A +LF+E+ + ++R +
Sbjct: 983 YKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSF 1017
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 86/222 (38%), Gaps = 22/222 (9%)
Query: 104 ACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
A +YN EF + + Y+ L+ T EA DM G+ S +L
Sbjct: 647 ALKEYNDTREF-----DWFTGSCTMYESLIQCCEENEFTAEASQIFSDMRFNGVKPSKSL 701
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPL--VVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y + C G E A +D + ++ P + +I+ Q A +
Sbjct: 702 YRSMVLMYCKMGFPETAHYLID-LAEIEGMPFDKISIDVAVIETYGKLKLWQKAESLVGN 760
Query: 222 MKNFCSP-NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
++ C+ + N +++AY G +E+A +F M D P + +
Sbjct: 761 LRQRCTNVDRKVWNALIQAYAASGCYEQARAVFNTMMRDGPS------------PTVDSI 808
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA 322
N +L A + R ++L +V + + G +K + +ILDA
Sbjct: 809 NGLLQALIVDGRLEELYVVTQEIQDMGFQI-SKSSILLILDA 849
>gi|297806463|ref|XP_002871115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316952|gb|EFH47374.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 942
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 114/254 (44%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P T + I ++G ++ +V D MR + G + P + +NA++
Sbjct: 588 PTTRTFMPIINGFAKSGDMRRSLEVFDMMR-------RCGCV--------PTVHTFNALI 632
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
N V ++Q E A +L ++ G + TY +M+ + G +E+F ++Q +
Sbjct: 633 NGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLE 692
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ Y+ L+ + G+ A++ ++M R I ++ +Y L G EA
Sbjct: 693 VDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADL 752
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ ++ K KP + +YT I AC +G++ A +M+ PN+ T ++K +
Sbjct: 753 IQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWAR 812
Query: 243 HGLFEEAMKLFQEM 256
L E+A+ ++EM
Sbjct: 813 ASLPEKALSCYEEM 826
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/275 (21%), Positives = 121/275 (44%), Gaps = 14/275 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PD+++YN ++ A + A ++++++ +P+ T+ ++ G
Sbjct: 551 MKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIINGFAKSGDMRRSL 610
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F +++ +P + L+N L + + ++AV +++M G+ + Y + +
Sbjct: 611 EVFDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGY 670
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP-NL 230
S G +A ++ + + +Y L++AC SG +Q+A + +M P N
Sbjct: 671 ASVGDTGKAFEYFTRLQNEGLEVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNS 730
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
NI++ + G EA L Q+M KK V PDI+T+ + + AC+
Sbjct: 731 FVYNILIDGWARRGDVWEAADLIQQM------------KKEGVKPDIHTYTSFISACSKA 778
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRA 325
+ + M G+ N K + +I +RA
Sbjct: 779 GDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARA 813
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/302 (20%), Positives = 129/302 (42%), Gaps = 27/302 (8%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++ I +Y+ +++ + V ++LK+ G P+ TYG ++ + GK +
Sbjct: 446 IDAPIAIYHTMMDGYTMVADEKKGLIVFKRLKECGFTPTVVTYGCLINLYTKVGKISKAL 505
Query: 113 EFFRKVQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E R +++ + + L Y +++N + A + EDM + G+ LY ++
Sbjct: 506 EVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIIAAF 565
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNL 230
C G + A+ + ++ K+ ++P ++ +I SG+++ + +F+ M+ C P +
Sbjct: 566 CGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIINGFAKSGDMRRSLEVFDMMRRCGCVPTV 625
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR--------------------EY--- 267
T N ++ +E E+A+++ EM N EY
Sbjct: 626 HTFNALINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTR 685
Query: 268 -DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+GL + DI+T+ +L AC R V K M + N+ + +I +R G
Sbjct: 686 LQNEGLEV-DIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRG 744
Query: 327 KV 328
V
Sbjct: 745 DV 746
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 22/205 (10%)
Query: 108 YNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
+ V F K+ K P+ + ++V R G A E M RGI ++ +Y L
Sbjct: 295 WQAVISAFEKINK---PSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSL 351
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227
EEAL + K+ + + +V+Y+ ++ +GN + A + F++ K
Sbjct: 352 IHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGNAEAADHWFDEAKRIHK 411
Query: 228 P-NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
N ++ A+ + E A L +EM E+ G+ P I ++TM+D
Sbjct: 412 TLNASIYGKIIYAHCQTCNMERAEALVREMEEE-----------GIDAP-IAIYHTMMDG 459
Query: 287 ---CAAEKRWDDLELVYKRMLHHGL 308
A EK+ +V+KR+ G
Sbjct: 460 YTMVADEKKG---LIVFKRLKECGF 481
>gi|242047668|ref|XP_002461580.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
gi|241924957|gb|EER98101.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
Length = 532
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 134/310 (43%), Gaps = 26/310 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y + L + G E ++++SM R P++ Y +L
Sbjct: 224 PNGVTYSMLIDCLCKFGGHTEAREILNSM---------------IQSRGNPNVATYGGLL 268
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + ++ + Q G +P + + + + CG+ + F K+ Q+ +
Sbjct: 269 HGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLM 328
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++Y +++ L + G+ D A+S M G+ ++ +L GK E+A
Sbjct: 329 PDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGLSPDIVVFTNLIHGFSMYGKWEKAEEL 388
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
++ +P VV +T +I G + A +F+ M PN+V+ N ++ Y
Sbjct: 389 FYEMMDRGIRPTVVVFTTMIDKLFKEGKVTEAKTLFDLMPIASVKPNVVSYNAIIHGYFL 448
Query: 243 HGLFEEAMKLFQEM--------AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
G +E +KL +M A N + + GL PD+ T NT++D+C + R +
Sbjct: 449 AGKLDEVLKLLDDMLSVGLKPNAVTFNTLLDDMLSMGLK-PDVATCNTLIDSCCEDGRIE 507
Query: 295 DLELVYKRML 304
D+ +++ ML
Sbjct: 508 DVLTLFREML 517
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 128/294 (43%), Gaps = 15/294 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V Y V++ + + A+ + ++ +G P T +++ + + E
Sbjct: 119 PNVVSYTTVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEV 178
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
R++ K +P+ Y LV+ G+ EAV ++ M R G + Y L CLC
Sbjct: 179 LRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCK 238
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G EA ++ + + P V +Y GL+ G++ + + M +N P+
Sbjct: 239 FGGHTEAREILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHI 298
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
NI + AY++ G +EAM F +M + +GL +PDI ++ TM+D R
Sbjct: 299 FNIQIYAYVKCGRLDEAMLTFNKMRQ-----------QGL-MPDIISYGTMIDGLCKIGR 346
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELL-EITWEHLARADRIT 345
D + +M+ GL + +I S GK E E+ +E + R R T
Sbjct: 347 LDAAMSQFCQMIDDGLSPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPT 400
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 129/289 (44%), Gaps = 22/289 (7%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
+ +D + PD YN++++ + Q + A +L+Q+ + GQ P+ TY ++++ + G
Sbjct: 181 QMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCKFG 240
Query: 107 KYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY- 164
+ E +Q PN Y L++ +G E + ++ M + G+ ++
Sbjct: 241 GHTEAREILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFN 300
Query: 165 ---YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221
Y +C G+ +EA++ +K+ + P ++SY +I G + A F Q
Sbjct: 301 IQIYAYVKC----GRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQ 356
Query: 222 M-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
M + SP++V ++ + +G +E+A +LF EM + + P + F
Sbjct: 357 MIDDGLSPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRG------------IRPTVVVF 404
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
TM+D E + + + ++ M + N + +I AGK++
Sbjct: 405 TTMIDKLFKEGKVTEAKTLFDLMPIASVKPNVVSYNAIIHGYFLAGKLD 453
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 118/284 (41%), Gaps = 14/284 (4%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D + PD+V N++++ + + + A VL+Q+ + P TTY ++ L+ G
Sbjct: 146 EMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEVLRQMFDKHIMPDCTTYNSLVHGYLSSG 205
Query: 107 KYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ +++ + PN + Y +L++ L + G EA + M + + A Y
Sbjct: 206 QLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCKFGGHTEAREILNSMIQSRGNPNVATYG 265
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-N 224
L + G E +D + + +P + I A + G + A FN+M+
Sbjct: 266 GLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQ 325
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
P++++ M+ + G + AM F +M +D + PDI F ++
Sbjct: 326 GLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDG------------LSPDIVVFTNLI 373
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+ +W+ E ++ M+ G+ MI + GKV
Sbjct: 374 HGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKLFKEGKV 417
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 32/184 (17%)
Query: 152 MERRG---IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
M R G + + Y L C C G A + +I K + +S+T +++
Sbjct: 1 MARAGSKKVAPTTVTYTILISCCCYVGCLNLAFAALGQIIKTGLRANAISFTPILRTLCA 60
Query: 209 SGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNH---- 262
+A I + K C+P++ + +++K + EEA+ L MAED +H
Sbjct: 61 EKRTSDAMNIVIRWTPKLGCTPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAEDGDHCPPN 120
Query: 263 ----------------INREYD------KKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ + Y +G + PD+ T N+++D + D E V
Sbjct: 121 VVSYTTVIHGFFKEDEVGKAYTLFCEMLDRG-IPPDVVTCNSIIDGLCKVQAMDKAEEVL 179
Query: 301 KRML 304
++M
Sbjct: 180 RQMF 183
>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 614
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 134/306 (43%), Gaps = 31/306 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + + L + G +K+ +V+ M K G ++ +IV YN+++
Sbjct: 272 PDVYTFNILVDGLCKEGEMKKARNVLAVM-------IKQG--------VDSNIVTYNSLM 316
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ KQ A +V + ++G P +Y +++ + + F+++ KS
Sbjct: 317 DGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMA 376
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L++ L + G+ +A V +M RG Y L LC + ++A+
Sbjct: 377 PNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITL 436
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYL 241
+ KI +P + +YT L+ +G +++A ++ + K + ++ N+MV
Sbjct: 437 ITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGY-HLDVKMYNVMVNGLC 495
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ GLF+EA+ L +M ++ IPD T+ T++ A + D + +
Sbjct: 496 KEGLFDEALSLVSKMEDNG------------CIPDAVTYETLVRALFENDKNDKAVKLLR 543
Query: 302 RMLHHG 307
M+ G
Sbjct: 544 EMIVQG 549
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 107/257 (41%), Gaps = 14/257 (5%)
Query: 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR 116
I +N +L++ V+ + A +Q++ + +P T+ +++ G N +
Sbjct: 64 IFEFNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLA 123
Query: 117 KVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
K+ K + P+ + L+ L GK EA+ +D+ +G Y L LC G
Sbjct: 124 KIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTG 183
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMKNFCSPNLVTCN 234
+ AL + KI + +P VV Y +I + C D I + + P++VT
Sbjct: 184 ETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYT 243
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
++ L G +EA+ LF +M + + PD+YTFN ++D E
Sbjct: 244 TLIYGCLIVGRLKEAVGLFNQMLLKN------------IKPDVYTFNILVDGLCKEGEMK 291
Query: 295 DLELVYKRMLHHGLHFN 311
V M+ G+ N
Sbjct: 292 KARNVLAVMIKQGVDSN 308
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 90/181 (49%), Gaps = 16/181 (8%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S P+TV Y S+ L + G I + +D+++ M + R P D++ Y+
Sbjct: 374 SMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHN------------RGQP---ADVITYS 418
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-K 120
++L+A + Q + A ++ ++K QG +P+ TY ++++ + G+ ++ + K
Sbjct: 419 SLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIK 478
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
Y + Y V+VN L +EG DEA+S V ME G + A Y L R L K ++A
Sbjct: 479 GYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRALFENDKNDKA 538
Query: 181 L 181
+
Sbjct: 539 V 539
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 117/297 (39%), Gaps = 35/297 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PDTV ++ L G ++E D + + K F D V Y +
Sbjct: 131 HPDTVTITTLIKGLCLNGKVREALHFHDDVIA---KGFHL------------DQVSYGTL 175
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM----LACGKYNLVYEFFRKVQ 119
+N + + A VL+++ +P+ Y +++ + L +L E +
Sbjct: 176 INGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEM---IV 232
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K P+ + Y L+ G+ EAV M + I + L LC G+ ++
Sbjct: 233 KRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKK 292
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A + + K +V+Y L+ A ++FN M + +P++ + +IM+
Sbjct: 293 ARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMIN 352
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
+ + +EA+ LF+EM S + P+ T+N+++D R D
Sbjct: 353 GLCKTKMVDEAVNLFKEMHSKS------------MAPNTVTYNSLIDGLLKYGRISD 397
>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
Length = 484
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 115/274 (41%), Gaps = 19/274 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V Y V+N + + A+ ++ +G P+ TY ++ + + E
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEV 256
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
V+ +PN Y +V+ G+ EA+ ++ M G+ Y L LC
Sbjct: 257 LTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCK 316
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G+C EA D + K KP + +Y L+Q G + + + M +N PN
Sbjct: 317 NGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 376
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+I++ AY + G ++AM +F +M + +GL PD T+ T++ R
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQ-----------QGLN-PDTVTYGTVIGILCKSGR 424
Query: 293 WDDLELVYKRMLHHGLH-----FNAKRHLRMILD 321
+D +++M+ L +N+ H I D
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFD 458
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/300 (21%), Positives = 130/300 (43%), Gaps = 17/300 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK--PSATTYGLVMEVMLACGKYNLVY 112
P++ YN +L + + A +LQ + G P +Y V+ G + Y
Sbjct: 160 PNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAY 219
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ + + + +PN + Y ++ L + D+A+ + M + G++ + Y +
Sbjct: 220 GTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGY 279
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
CS+G+ +EA+ + K+ +P VV+Y L+ +G A +F+ M K P +
Sbjct: 280 CSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEI 339
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T +++ Y G E L M + H P+ Y F+ ++ A A +
Sbjct: 340 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIH------------PNHYVFSILICAYAKQ 387
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
+ D LV+ +M GL+ + + +I ++G+VE +E + +R++P ++
Sbjct: 388 GKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID-ERLSPGNIV 446
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/292 (19%), Positives = 123/292 (42%), Gaps = 29/292 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y ++ + G + + + M D + P++V Y++++
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEM---------------LDRGILPNVVTYSSII 241
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
A + + + A VL + + G P+ TY ++ + G+ F +K+ +
Sbjct: 242 AALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVE 301
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ L + G+ EA + M +RG+ Y L + + G E
Sbjct: 302 PDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL 361
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+D + + P ++ LI A G + A +F++M+ +P+ VT ++ +
Sbjct: 362 LDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCK 421
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
G E+AM+ F++M ++ + P +N+++ + +WD
Sbjct: 422 SGRVEDAMRYFEQMIDER------------LSPGNIVYNSLIHSLCIFDKWD 461
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 21/162 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTLERWDPR---------- 52
PD V Y S+ L + G E + DSM R L + GTL +
Sbjct: 302 PDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGL 361
Query: 53 --------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ P+ V++ ++ A ++ + + A V +++QQG P TYG V+ ++
Sbjct: 362 LDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCK 421
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEA 145
G+ +F + + + P + Y L+++L K D+A
Sbjct: 422 SGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKA 463
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 15/186 (8%)
Query: 145 AVSAVEDMERRG---IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
AVS M R G + + Y L C AG+ + + + K + +++T
Sbjct: 72 AVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTP 131
Query: 202 LIQA-CLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
L++ C D + +M C PN+ + NI++K + +EA++L Q M +D
Sbjct: 132 LLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDD 191
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
G PD+ ++ T+++ E D Y ML G+ N + +I
Sbjct: 192 G----------GDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSII 241
Query: 320 LDASRA 325
+A
Sbjct: 242 AALCKA 247
>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
Length = 764
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/362 (21%), Positives = 151/362 (41%), Gaps = 33/362 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P AY ++ L + G + + + M+ L E ++ + ++
Sbjct: 59 PAFSAYTTLIGALSEVGESDRMLALFNQMQELG---------------YEVNVHLLTTLI 103
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
R + + A +L ++K Y + ++ GK ++ ++FF +++ +
Sbjct: 104 RVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLV 163
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y ++ L + + DEAV E ME+ V A Y + SAGK +EA
Sbjct: 164 PDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSL 223
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
+++ P VV+Y ++ G A IF +MK PNL T NI++ +
Sbjct: 224 LERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAMPNLPTYNIIIGMLCKA 283
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G E A K+ R+ K+ + P++ T N M+D ++ D+ +++ M
Sbjct: 284 GNVEAAFKV------------RDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGM 331
Query: 304 LHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI----TPPALIKERF-CNRL 358
+ + +I + G+V+ +E + AD+I +LI+ F C+R
Sbjct: 332 DYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRK 391
Query: 359 EN 360
E+
Sbjct: 392 ED 393
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/301 (18%), Positives = 129/301 (42%), Gaps = 29/301 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + S+ LG+ G + + + + + M D P++VVY +++
Sbjct: 338 PDGATFCSLIDGLGKQGRVDDAYRIYERM---------------LDADQIPNVVVYTSLI 382
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ + E + +++ + G P M+ + G+ F +++ + ++
Sbjct: 383 RNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFL 442
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ +Y +L+++L + G E M+ +G V Y + C +GK +A
Sbjct: 443 PDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQL 502
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
++++ + + P VV+Y ++ + A +F + K N N V + ++ + +
Sbjct: 503 LEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGK 562
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +EA + +EM + KGL P++YT+N +LD + ++ + ++
Sbjct: 563 VGRVDEAYLVMEEMMQ-----------KGLT-PNVYTWNCLLDGLVKAEEINEALVCFQS 610
Query: 303 M 303
M
Sbjct: 611 M 611
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 122/288 (42%), Gaps = 52/288 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT +Y + +L +AG +E +++ +M+ D D YN V+
Sbjct: 443 PDTRSYSILIHSLVKAGFARETYELYYAMK---------------DQGCVLDTRAYNTVI 487
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + + A+ +L+++K G P+ TYG V++ + + + Y F + + + I
Sbjct: 488 DGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIE 547
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL-- 181
N + Y L++ + G+ DEA +E+M ++G+ + + L L A + EAL
Sbjct: 548 LNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVC 607
Query: 182 -----------------MQMDKICKVAN----------------KPLVVSYTGLIQACLD 208
+ ++ +CKV KP ++YT +I
Sbjct: 608 FQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAK 667
Query: 209 SGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
SGN+ A+ +F + + P+ + N M++ +A +LF+E
Sbjct: 668 SGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEE 715
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 114/277 (41%), Gaps = 22/277 (7%)
Query: 41 FKTGTLERWDPRLE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSA 92
FK G E+ E PD Y+ ++++ V+ + + +K QG
Sbjct: 421 FKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDT 480
Query: 93 TTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVED 151
Y V++ GK N Y+ +++ + P + Y +V+ L + + DEA E+
Sbjct: 481 RAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEE 540
Query: 152 MERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
+ GI + +Y L G+ +EA + M+++ + P V ++ L+ + +
Sbjct: 541 AKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEE 600
Query: 212 IQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270
I A F MK+ C+PN +T I++ + F +A +QEM K+
Sbjct: 601 INEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEM-----------QKQ 649
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
GL P+ T+ M+ A +++R G
Sbjct: 650 GLK-PNTITYTAMISGLAKSGNVAQASSLFERFRASG 685
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/251 (18%), Positives = 112/251 (44%), Gaps = 17/251 (6%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M +P V Y S+ L + + E + + + +S +E + V+Y
Sbjct: 509 MGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKS---------------NGIELNQVIY 553
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
+++++ + + + A+ V++++ Q+G P+ T+ +++ ++ + N F+ ++
Sbjct: 554 SSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKD 613
Query: 121 -SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
PN + Y +L+N L + K ++A ++M+++G+ + Y + L +G +
Sbjct: 614 LKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQ 673
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVK 238
A ++ P SY +I+ + +A +F + + CS + TC ++
Sbjct: 674 ASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEETRLKGCSIHTKTCVALLD 733
Query: 239 AYLEHGLFEEA 249
A + E+A
Sbjct: 734 ALHKAECLEQA 744
>gi|297808179|ref|XP_002871973.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297317810|gb|EFH48232.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 831
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 139/335 (41%), Gaps = 40/335 (11%)
Query: 38 KKKFKTGTLERWDPR-------------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLK 84
+ K G +ER P+ +P I+ Y ++ A R+K + ++ +++
Sbjct: 322 RTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSIITYTTLVTALTRQKHFHSLLSLISKVQ 381
Query: 85 QQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTD 143
+ G +P + ++ G + + F K+++S P A + L+ + GK +
Sbjct: 382 KNGLRPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLE 441
Query: 144 EAVSAVEDMERRGIVGSAALYYD-LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGL 202
E+ +E M R ++ + L + C+ K EEA + K+ KP V++ L
Sbjct: 442 ESSRLLEMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSFGVKPDAVTFNTL 501
Query: 203 IQACLDSGNIQNAA--YIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
+A G+ A I + N PN+ TC +V Y E G EEA++ F M E
Sbjct: 502 ARAYSRIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELG 561
Query: 261 NHIN--------------REYDKKGLVI---------PDIYTFNTMLDACAAEKRWDDLE 297
H N + D G V+ PD+ TF+T+++A ++ E
Sbjct: 562 VHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCE 621
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLE 332
+Y+ ML G+ + + +RAG+ E E
Sbjct: 622 EIYRDMLEGGIDPDIHAFSILAKGYARAGEPEKAE 656
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 101/241 (41%), Gaps = 17/241 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + ++A + G D+I +P+ +++P++ ++
Sbjct: 493 PDAVTFNTLARAYSRIGSTCTAEDMI-----IPRMLHN---------KVKPNVRTCGTIV 538
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + E A ++K+ G P+ + +++ L + V E +++ +
Sbjct: 539 NGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVK 598
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + L+N G DM GI + LA+ AG+ E+A
Sbjct: 599 PDVVTFSTLMNAWSSVGDMKRCEEIYRDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQI 658
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC--SPNLVTCNIMVKAYL 241
++++ K +P VV YT +I +G ++ A ++N+M+ SPNL T ++ +
Sbjct: 659 LNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYNKMRGSVGLSPNLTTYETLIWGFG 718
Query: 242 E 242
E
Sbjct: 719 E 719
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 17/164 (10%)
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
V S T L+ ++ G Q A IFN + + P+++T +V A F + L
Sbjct: 319 VRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSIITYTTLVTALTRQKHFHSLLSLIS 378
Query: 255 EMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKR 314
++ K GL PD FN +++A + D ++++M G A
Sbjct: 379 KV-----------QKNGLR-PDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTAST 426
Query: 315 HLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRL 358
+I + GK+E E + R + + P +R CN L
Sbjct: 427 FNTLIKGYGKIGKLEESSRLLEMMLRDEMLQP----NDRTCNIL 466
>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 701
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 129/318 (40%), Gaps = 49/318 (15%)
Query: 49 WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY 108
W L+PD+ Y ++N V+ GA V ++ +G T Y ++++ G Y
Sbjct: 178 WSQNLKPDVFSYGTLINGMVKVGDLLGALKVFDEMSVRGVVADVTCYNMLIDGFFKHGDY 237
Query: 109 NLVYEFFRKVQK--SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
+ E + ++ K S PN + Y +++N L + G+ DE++ E M + Y
Sbjct: 238 DKGKEIWERLVKDCSVYPNVVTYNIMINGLCKCGRFDESLEIWERMTKNEREKDMFTYSS 297
Query: 167 LARCLCSAGKCEEAL-------------------MQMDKICKVA---------------N 192
L LC AG + A+ ++ C+ N
Sbjct: 298 LIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKEN 357
Query: 193 KPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMK 251
VVSY LI+ ++G ++ A I+ + K C P T +++ ++G +A+K
Sbjct: 358 CQTVVSYNILIKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALK 417
Query: 252 LFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
+F+E AED G D Y +++M+D E R D+ + +M G +
Sbjct: 418 IFKE-AED-----------GPGKLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLD 465
Query: 312 AKRHLRMILDASRAGKVE 329
+I RA K+E
Sbjct: 466 PHVCNPLINGFVRASKLE 483
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/305 (20%), Positives = 124/305 (40%), Gaps = 28/305 (9%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S YP+ V Y + L + G E ++ + M ++K D+ Y+
Sbjct: 252 SVYPNVVTYNIMINGLCKCGRFDESLEIWERMTKNEREK---------------DMFTYS 296
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
++++ +GA V +++ + A T+ ++ GK +E + + K
Sbjct: 297 SLIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKE 356
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
++Y +L+ L+ GK +EA+S E + ++G + Y L LC G+ +AL
Sbjct: 357 NCQTVVSYNILIKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKAL 416
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
+ K +Y+ ++ G + A I NQM K + CN ++ +
Sbjct: 417 KIFKEAEDGPGKLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGF 476
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ E+A+ F+EM + KG P I ++NT++ +R+ +
Sbjct: 477 VRASKLEDAINFFREM-----------ECKGCS-PTIVSYNTLIKGLCKAERFSEAYSFV 524
Query: 301 KRMLH 305
K ML
Sbjct: 525 KEMLE 529
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/344 (21%), Positives = 147/344 (42%), Gaps = 71/344 (20%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V + ++ +AG IKE F++ M K+ +T +V YN ++
Sbjct: 326 DAVTHNAMLNGFCRAGKIKESFELWMVM---GKENCQT-------------VVSYNILIK 369
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP- 124
+ E A + + L ++G +P +TTYG+++ + G+ N + F++ + P
Sbjct: 370 GLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDG--PG 427
Query: 125 --NALAYKVLVNTLWREGKTDEAVSAVEDMERRG--------------IVGSAAL----- 163
+A AY +V+ L +EG+ DEA+S V M++RG V ++ L
Sbjct: 428 KLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAIN 487
Query: 164 ----------------YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
Y L + LC A + EA + ++ + KP +++ + L+
Sbjct: 488 FFREMECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLC 547
Query: 208 DSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
I+ A ++ Q K F P++ NI++ E+A++L+ M
Sbjct: 548 QEKKIEMALNLWQQALDKGF-KPDITMYNILMHGLCSVCKLEDALQLYSHM--------- 597
Query: 266 EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH 309
K+ +P++ T NT+++ + ++ ++ +L GLH
Sbjct: 598 ---KRSTCVPNLVTRNTLMEGLYKVRDYEKASEIWDCILKDGLH 638
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 116/272 (42%), Gaps = 16/272 (5%)
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQ-GQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
V+ A + K A Q ++ G KP +Y ++ + +++ F R +
Sbjct: 85 TVIKAYAKNKMSNKALDTFQNMQDIFGCKPGVRSYNTLLNAFVELNEWDRAESFSRYFES 144
Query: 121 SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ PN Y +L+ ++ + ++A+S ++ M + + Y L + G
Sbjct: 145 MDVSPNLQTYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLG 204
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--PNLVTCNIMV 237
AL D++ V Y LI G+ I+ ++ CS PN+VT NIM+
Sbjct: 205 ALKVFDEMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMI 264
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
+ G F+E++++++ M ++ RE D++T+++++ D
Sbjct: 265 NGLCKCGRFDESLEIWERMTKNE----RE--------KDMFTYSSLIHGLCEAGNIDGAV 312
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
VYK ++ L +A H M+ RAGK++
Sbjct: 313 RVYKEIVESSLVVDAVTHNAMLNGFCRAGKIK 344
>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Cucumis sativus]
Length = 783
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 117/254 (46%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y + L QA K++FD + L K +G D++ YN +L
Sbjct: 231 PNQIIYSIVLSGLCQA---KKIFDA----QRLFSKMRASGC--------NRDLITYNVLL 275
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + + AF +LQ L + G YG ++ + +Y + +++K+ + I
Sbjct: 276 NGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIK 335
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y +++ L +EG+ EA++ + +M RG+ Y L + C G +EA
Sbjct: 336 PDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESL 395
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+I K P +Y+ LI +G I A +IF +M+ C P++VT N ++ +
Sbjct: 396 RLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCK 455
Query: 243 HGLFEEAMKLFQEM 256
EEA LF +M
Sbjct: 456 ANRLEEARLLFYQM 469
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 122/277 (44%), Gaps = 27/277 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD+V Y +++ + + + A + ++ +G P+ Y +V+ + K
Sbjct: 194 LNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQ 253
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F K++ S + + Y VL+N + G D+A + ++ + + G + Y L L
Sbjct: 254 RLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGL 313
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
A + EEA M K+ + KP V+ YT +I+ G + A + +M + P+
Sbjct: 314 FRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDT 373
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAE------------------------DSNHINRE 266
+ N ++K + + G +EA L E+++ + HI +E
Sbjct: 374 ICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKE 433
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
+K G +P + TFN++++ R ++ L++ +M
Sbjct: 434 MEKLG-CLPSVVTFNSLINGLCKANRLEEARLLFYQM 469
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 142/318 (44%), Gaps = 22/318 (6%)
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+L+ W R V + ++ ++ +E + VLQ+LK K S+ + +++E
Sbjct: 84 SLKSWHLRCR---TVQDLIIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSE 140
Query: 105 CGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G E F ++ P+ A+ ++++ L R+ A++ M + +
Sbjct: 141 AGMDEKAVESFGLMRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVT 200
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L LC K ++AL+ D++ P + Y+ ++ + I +A +F++M+
Sbjct: 201 YGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMR 260
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ C+ +L+T N+++ + + G ++A L Q + +D + I + +
Sbjct: 261 ASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGH------------ILGVIGYGC 308
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHL 338
+++ +R+++ + Y++ML + + + MI S+ G+V LL E
Sbjct: 309 LINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERG 368
Query: 339 ARADRITPPALIKERFCN 356
R D I ALIK FC+
Sbjct: 369 LRPDTICYNALIKG-FCD 385
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D + PDI YN ++N + GAF + ++++ +G P + TYG +++ + G+
Sbjct: 519 DSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNE 578
Query: 110 LVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSA 148
E F + V+K +P + YK ++ RE A+S
Sbjct: 579 DALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSV 618
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 74/176 (42%), Gaps = 16/176 (9%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPS--------------ATTYGLVME 100
P +V +N+++N + + E A + Q+ + +KPS + ++ME
Sbjct: 441 PSVVTFNSLINGLCKANRLEEARLLFYQM-EIVRKPSLFLRLSQGTDKVFDIASLQVMME 499
Query: 101 VMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+ G Y+ + V +P+ Y +L+N + G + A ++M+ +G +
Sbjct: 500 RLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMP 559
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA 215
+ Y L L AG+ E+AL +++ K P +Y ++ NI A
Sbjct: 560 DSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLA 615
>gi|359488082|ref|XP_002266772.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g08610-like [Vitis vinifera]
Length = 498
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 18/245 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDI+ YN ++ ++ + A +L ++ G P A TY ++ M G ++ F
Sbjct: 107 PDIITYNMLVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTILRCMFDHGGFDQAIGF 166
Query: 115 FRKVQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ + P L Y VL+ + + T +A+ +EDM G Y L C
Sbjct: 167 WKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDMAIEGCYPDIVTYNSLVNYTCK 226
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG---NIQNAAYIFNQMKNFCSPNL 230
GK E+ + + + P V+Y L+ + G + I N P +
Sbjct: 227 QGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSLCTHGYWDEVDEILLIMNTTSQ--PPTV 284
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT NI++ ++GL + A+ F +M + +PDI T+NT+L A E
Sbjct: 285 VTYNILINGLCKYGLLDRAINFFDQMVSHN------------CLPDIITYNTLLAALCKE 332
Query: 291 KRWDD 295
D+
Sbjct: 333 GMVDE 337
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 36/351 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y + L + G +K +++D M SL PD + YN +L
Sbjct: 107 PDIITYNMLVGGLCKKGLLKTAIELLDEM-SLSG--------------CPPDAITYNTIL 151
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA-CGKYNLVYEFFRKVQKSYI 123
++ A + ++G TY +++E++ CG + +
Sbjct: 152 RCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDMAIEGCY 211
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG---KCEEA 180
P+ + Y LVN ++GK ++ + ++ G+ + Y L LC+ G + +E
Sbjct: 212 PDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSLCTHGYWDEVDEI 271
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
L+ M+ + P VV+Y LI G + A F+QM + C P+++T N ++ A
Sbjct: 272 LLIMN---TTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAA 328
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ G+ +EA+ L + + P + T+N ++D A + + +
Sbjct: 329 LCKEGMVDEALHLLHSLNDTRCS------------PGLITYNIVIDGLAKKGCMEKAMEL 376
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVE-LLEITWEHLARADRITPPAL 349
Y M+ G + H + R VE L I E R RI A
Sbjct: 377 YGEMIERGFAPDDITHRTLFWGLFRLDLVEDALVILKEMNKRNQRIKNSAF 427
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/292 (19%), Positives = 107/292 (36%), Gaps = 52/292 (17%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD V Y S+ + G ++ +I ++ S + P+ V YN +
Sbjct: 211 YPDIVTYNSLVNYTCKQGKYEDTALIIYNLLS---------------HGMGPNTVTYNTL 255
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSY 122
L++ W+ +L + Q P+ TY +++ + G + FF + V +
Sbjct: 256 LHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNC 315
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P+ + Y L+ L +EG DEA+ + + Y + L G E+A+
Sbjct: 316 LPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAME 375
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-------KNF---------- 225
++ + P +++ L +++A I +M KN
Sbjct: 376 LYGEMIERGFAPDDITHRTLFWGLFRLDLVEDALVILKEMNKRNQRIKNSAFRFVIHGLC 435
Query: 226 -------------------CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
C PN + ++K G+ EEA +L Q++ E
Sbjct: 436 KKKKVDIAIQVLEMMVSSQCKPNEEIYSAIIKGVGAAGMIEEANQLHQKLTE 487
>gi|242073234|ref|XP_002446553.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
gi|241937736|gb|EES10881.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
Length = 381
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 139/300 (46%), Gaps = 18/300 (6%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP++V YN +++A R + A +L L +G KP+ Y V++ + + ++ E
Sbjct: 13 EPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGLCSIERWVDAEE 72
Query: 114 FFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ V+++ PN V+VNTL R+G + +E M + G + Y + +C
Sbjct: 73 LLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVVTYNAVISGMC 132
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
G + AL + + KP +V+Y L++ + ++A + +M +N C P+ V
Sbjct: 133 EQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMIKMSQNDCLPDNV 192
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ + GL +A ++F++M E + P+ T++T++ A
Sbjct: 193 TFNTIISFLCQKGLILQAFEVFKQMPEKGCN------------PNSTTYSTIIGGLAKAG 240
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDA-SRAGKVELLEITWEHLARADRITPPALI 350
+ + + M G +N + +++ ++ ++ K+E + + H + I+P ++
Sbjct: 241 KMEQALELLNEMASKG--YNTDKMYQLLTESLNKEDKIEEV-VQVVHKLQDSGISPQTVL 297
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 118/265 (44%), Gaps = 17/265 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y I + + G + + ++++S LP + K P+ V YN VL
Sbjct: 14 PNVVTYNVIIDAMCREGDVDQARELLNS---LPSRGCK------------PNTVNYNTVL 58
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
++W A +L ++ ++ P+ T +++ + G V + K+ K
Sbjct: 59 KGLCSIERWVDAEELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCT 118
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + Y +++ + +G D A+ + +M+ G Y L + LCSA + E+A
Sbjct: 119 ANVVTYNAVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEEL 178
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
M K+ + P V++ +I G I A +F QM + C+PN T + ++ +
Sbjct: 179 MIKMSQNDCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAK 238
Query: 243 HGLFEEAMKLFQEMAEDSNHINREY 267
G E+A++L EMA + ++ Y
Sbjct: 239 AGKMEQALELLNEMASKGYNTDKMY 263
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 106/268 (39%), Gaps = 54/268 (20%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+ V Y ++ + + GH+ +++ +M+S K PDIV YN +L
Sbjct: 120 NVVTYNAVISGMCEQGHVDSALELLSNMQSFGCK---------------PDIVTYNTLLK 164
Query: 66 ACVRRKQWEGA-----------------------------------FWVLQQLKQQGQKP 90
QWE A F V +Q+ ++G P
Sbjct: 165 GLCSADQWEDAEELMIKMSQNDCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNP 224
Query: 91 SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVE 150
++TTY ++ + GK E ++ Y++L +L +E K +E V V
Sbjct: 225 NSTTYSTIIGGLAKAGKMEQALELLNEMASKGYNTDKMYQLLTESLNKEDKIEEVVQVVH 284
Query: 151 DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG 210
++ GI L+ + LC GK + A+ + + P ++Y LI+ G
Sbjct: 285 KLQDSGISPQTVLFNTVLLVLCRNGKTDYAIDVLADMVSYGCMPDELTYIILIEGLSYEG 344
Query: 211 NIQNAAYIFNQMKNFCSPNLVTCNIMVK 238
+Q A + +++ CS ++++ N ++K
Sbjct: 345 YLQEARELVSRL---CSRDVLS-NSLIK 368
>gi|357474081|ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508380|gb|AES89522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 834
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 144/347 (41%), Gaps = 33/347 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTG----TLER 48
P Y ++ V + G+ E + D M RSL K G L+
Sbjct: 288 PSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQL 347
Query: 49 WDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+D +E PD+V+++ ++N C + E A+ + ++K G +P+ ++E
Sbjct: 348 FDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHE 407
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
Y F + + I N + Y +L+ L GK +EA + E M +GI S Y
Sbjct: 408 QNLLEHAYGLFDEAVEHGITNVVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSY 467
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
+L C G ++A + I + KP V+YT LI G+ + A +F QM
Sbjct: 468 NNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMA 527
Query: 225 F-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
+P T N ++ + G ++E + +N + K+G V I T+N++
Sbjct: 528 ANIAPTDHTFNTVINGLGKTG----------RVSETQDKLNN-FIKQGFVSTSI-TYNSI 575
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330
+D E D L Y+ M G+ + + +I ++ K+ L
Sbjct: 576 IDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGL 622
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/358 (19%), Positives = 151/358 (42%), Gaps = 32/358 (8%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+ V Y + LG+ G + E ++ + M S + P +V YN ++
Sbjct: 428 NVVTYNILLKWLGELGKVNEACNLWEKMVS---------------KGITPSLVSYNNLIL 472
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
++ + A+ +L+ + ++G KP+A TY L+++ G + F ++ + I P
Sbjct: 473 GHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAP 532
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ ++N L + G+ E + + ++G V ++ Y + G + AL+
Sbjct: 533 TDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAY 592
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEH 243
++C+ P V++YT LI S I A + + MK ++V + ++ + +
Sbjct: 593 REMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKM 652
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
E A K F E+ + + P+ +N+M+ + +++ M
Sbjct: 653 HDMESASKFFTELLDIG------------LTPNTVVYNSMISGFIHLNNMEAALNLHQEM 700
Query: 304 LHHGLHFNAKRHLRMILDASRAGKVEL-LEITWEHLARADRITPPALIKERFCNRLEN 360
+ + + + + + +I + GK+ L L++ E L++ I P ++ N L N
Sbjct: 701 IKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSK--DIVPDIVMYTVLINGLSN 756
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/304 (19%), Positives = 125/304 (41%), Gaps = 34/304 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTL------ 46
P + ++ LG+ G + E D +++ S+ FK G +
Sbjct: 532 PTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLA 591
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E + + PD++ Y ++++ + + A + +K +G K Y +++
Sbjct: 592 YREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCK 651
Query: 105 CGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
+FF ++ PN + Y +++ + A++ ++M + + +
Sbjct: 652 MHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQV 711
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y + L GK AL ++ P +V YT LI ++G ++NA+ I +M
Sbjct: 712 YTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMD 771
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
N +P+++ NI++ G +EA +L EM + KGLV PD T++
Sbjct: 772 GNNITPSVLVYNILIAGNFREGNLQEAFRLHDEMLD-----------KGLV-PDDTTYDI 819
Query: 283 MLDA 286
+++
Sbjct: 820 LVNG 823
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/367 (20%), Positives = 146/367 (39%), Gaps = 58/367 (15%)
Query: 33 MRSLPKKKFKTGTLERWDPRLEPDIV----VYNAVLNACVRRKQWEGAFWVLQQLKQQGQ 88
++S + T +E + LE D+V + N +L A VRR A + ++ ++G
Sbjct: 157 LKSFVRVNKITDAVECFRTMLEHDLVPWVPIMNNLLTAMVRRNMVCDARQLYDEMVERGI 216
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVS 147
T +VM + GK+ V +FF++ + + +A AY +LV + R + A
Sbjct: 217 YGDCYTLHVVMRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQAVCRRLDLNLACE 276
Query: 148 AVEDMERRGIVGSAALYY-----------------------------------DLARCLC 172
+++M G V S Y L + C
Sbjct: 277 LLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGYC 336
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLV 231
G AL D++ + P VV ++ LI C G+++ A ++ +MK PN+
Sbjct: 337 VLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVF 396
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
N +++ + E L E A LF E E I ++ T+N +L
Sbjct: 397 IVNSLLEGFHEQNLLEHAYGLFDEAVEHG-------------ITNVVTYNILLKWLGELG 443
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLEITWEHLARADRITPP 347
+ ++ ++++M+ G+ + + +IL + G ++ +L+ E + + +T
Sbjct: 444 KVNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYT 503
Query: 348 ALIKERF 354
LI F
Sbjct: 504 LLIDGFF 510
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 72/162 (44%), Gaps = 1/162 (0%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E D L P+ VVYN++++ + E A + Q++ + Y ++ +L G
Sbjct: 664 ELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTSIIGGLLKEG 723
Query: 107 KYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K +L + + + + K +P+ + Y VL+N L G+ + A +++M+ I S +Y
Sbjct: 724 KLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNNITPSVLVYN 783
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
L G +EA D++ P +Y L+ L
Sbjct: 784 ILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILVNGKL 825
>gi|125560423|gb|EAZ05871.1| hypothetical protein OsI_28108 [Oryza sativa Indica Group]
Length = 608
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 144/332 (43%), Gaps = 22/332 (6%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+P ++ A++ A R KQ+ A V ++++ G +PSA TY ++++ + KY
Sbjct: 174 KPSVISQTALMEAYGRAKQYRKAEAVFRRMQTSGPEPSAVTYQIILKSFVEGDKYKEAEA 233
Query: 114 FFRKV----QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
F + + S+ P+ + +++ + G +A M RGI S + L
Sbjct: 234 IFEDLLNEKRASFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSL-- 291
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSP 228
+ +E D++ + A KP VVSY+ LI+A + + A +F +M + P
Sbjct: 292 -MSFETDYKEVSNIYDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRP 350
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
+ NI++ A+ GL EEA +F+ M ++ V PD+ ++ TM+ A
Sbjct: 351 TRKSYNILIDAFAISGLVEEAHTVFKAM------------RRHRVEPDLCSYTTMVLAYV 398
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPA 348
D E ++R+ GL N + ++ S+ VE + +E + R + P
Sbjct: 399 NASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERM-RMQGVEPNQ 457
Query: 349 LIKERFCN-RLENKDYGSAISCLVSHPVSGSP 379
I + N D+G+A+ G P
Sbjct: 458 TIYTTIMDVHGRNSDFGNAVIWFKEMEARGYP 489
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/254 (19%), Positives = 112/254 (44%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P V Y+ I + + KE + + + + + FK PD +++ ++
Sbjct: 210 PSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFK------------PDQKMFHMMI 257
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + A + Q+ ++G S T+ +M Y V + ++Q++ +
Sbjct: 258 YMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSFET---DYKEVSNIYDQMQRTALK 314
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++Y +L+ + + +EA++ E+M G+ + Y L +G EEA
Sbjct: 315 PDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTV 374
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ + +P + SYT ++ A +++ ++ A F ++K + PN+V ++K Y +
Sbjct: 375 FKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSK 434
Query: 243 HGLFEEAMKLFQEM 256
E M++++ M
Sbjct: 435 LNNVERVMRVYERM 448
>gi|110738150|dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]
Length = 642
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 125/260 (48%), Gaps = 26/260 (10%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R++PDIV YN ++ + Q + A L+ ++ +G + TY +++ A +
Sbjct: 234 RIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSC 293
Query: 112 YEFFRKVQKSYI---PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
++++ + I P+A + +++ L +EGK +E + E+M R+G + A+Y L
Sbjct: 294 VALYQEMDEKGIQVPPHA--FSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLI 351
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP 228
+G E+A+ + ++ KP VV+Y+ ++ +G ++ A F+ C
Sbjct: 352 DGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHT----CRF 407
Query: 229 NLVTCNIMVKAYLEHGL-----FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
+ + N M + L GL +EA +LF+EM+E KG D Y +N +
Sbjct: 408 DGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSE-----------KGCT-RDSYCYNAL 455
Query: 284 LDACAAEKRWDDLELVYKRM 303
+DA ++ D+ ++KRM
Sbjct: 456 IDAFTKHRKVDEAIALFKRM 475
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 2/216 (0%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D +PD+V Y+ V+N + + E A + G ++ Y +++ + G+ +
Sbjct: 372 DEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVD 431
Query: 110 LVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM-ERRGIVGSAALYYDL 167
F ++ +K ++ Y L++ + K DEA++ + M E G + Y L
Sbjct: 432 EAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTIL 491
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227
+ + EEAL D + P + L SG + A I +++
Sbjct: 492 LSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPMGV 551
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
C M+ + G +EA KL + E +
Sbjct: 552 ILDAACEDMINTLCKAGRIKEACKLADGITERGREV 587
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 15/237 (6%)
Query: 107 KYNLVYEFF--RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
K ++ + FF + QK Y N Y LV+ L D ++++ + +
Sbjct: 113 KPDIAWSFFCWSRKQKKYTHNLECYVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAA 172
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
L + G EE L K+ + +P + +Y L+ + + + +A +F M++
Sbjct: 173 NALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMES 232
Query: 225 F-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
P++VT N M+K Y + G ++AM+ ++M E H E DK T+ TM
Sbjct: 233 GRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDM-ETRGH---EADK--------ITYMTM 280
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
+ AC A+ + +Y+ M G+ +I + GK+ +E++ R
Sbjct: 281 IQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIR 337
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/287 (19%), Positives = 125/287 (43%), Gaps = 28/287 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y + L + G ++E D + R +D L + + Y++++
Sbjct: 377 PDVVTYSVVVNGLCKNGRVEEALDYFHTCR--------------FDG-LAINSMFYSSLI 421
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK--SY 122
+ + + + A + +++ ++G + Y +++ K + F+++++
Sbjct: 422 DGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGC 481
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
Y +L++ +++E + +EA+ + M +GI +AA + L+ LC +GK A
Sbjct: 482 DQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACK 541
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAY 240
+D++ + L + +I +G I+ A + + + + P + +M+ A
Sbjct: 542 ILDELAPMG-VILDAACEDMINTLCKAGRIKEACKLADGITERGREVPGRIR-TVMINAL 599
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
+ G + AMKL + I Y++ G V + F T+L+ C
Sbjct: 600 RKVGKADLAMKLMH------SKIGIGYERMGSVKRRV-KFTTLLETC 639
>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
Length = 595
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 124/292 (42%), Gaps = 14/292 (4%)
Query: 51 PRLEPDIVVYNAVLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
P P+ V Y V+ C R+ E A +L+ ++ G + TYG ++ + + +
Sbjct: 117 PAARPNAVSYTTVMRGLCASRRTGE-AVALLRSMQASGVRADVVTYGTLIRGLCDASELD 175
Query: 110 LVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
E ++ S + PN + Y L+ R G+ + EDM RRGI ++ L
Sbjct: 176 AALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLI 235
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCS 227
LC GK +A D + + +P VV+Y LI + G+++ A + +M + +
Sbjct: 236 DDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVA 295
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P++VT N ++ +EAM +EM + +V PD+ TFN+++
Sbjct: 296 PDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDT----------VVEPDVVTFNSVIHGL 345
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
R V + M G N + +I R KV++ + LA
Sbjct: 346 CKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELA 397
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 37/295 (12%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V Y ++ L A + +++D M ++P++VVY+ +L
Sbjct: 157 DVVTYGTLIRGLCDASELDAALELLDEM---------------CGSGVQPNVVVYSCLLR 201
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTY-GLVMEVML--ACGKYNLVYEFFRKVQKSY 122
R +W+ V + + ++G KP + GL+ ++ GK V + VQ+
Sbjct: 202 GYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMM--VQRGL 259
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN + Y VL+N+L +EG EA++ ++M+ +G+ Y L L + +EA+
Sbjct: 260 EPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMS 319
Query: 183 QMDKICK--VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
++++ + +P VV++ +I G + A + M + C NLVT N ++
Sbjct: 320 FLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGG 379
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
+L + AM L E+A PD +T++ +++ + K W+
Sbjct: 380 FLRVHKVKMAMNLMDELAISGLE------------PDSFTYSILINGFS--KMWE 420
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 95/223 (42%), Gaps = 48/223 (21%)
Query: 109 NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
+L+ + R+ + PNA++Y ++ L +T EAV+ + M+ G+ Y L
Sbjct: 106 SLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLI 165
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK----- 223
R LC A + + AL +D++C +P VV Y+ L++ SG Q+ +F M
Sbjct: 166 RGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIK 225
Query: 224 -----------NFC--------------------SPNLVTCNIMVKAYLEHGLFEEAMKL 252
+ C PN+VT N+++ + + G EA+ L
Sbjct: 226 PDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTL 285
Query: 253 FQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
+EM D KG V PD+ T+NT++ + D+
Sbjct: 286 RKEM-----------DDKG-VAPDVVTYNTLIAGLSGVLEMDE 316
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/288 (20%), Positives = 111/288 (38%), Gaps = 49/288 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ L + E ++ M + D +EPD+V +N+V+
Sbjct: 296 PDVVTYNTLIAGLSGVLEMDEAMSFLEEM-------------IQGDTVVEPDVVTFNSVI 342
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + A V + + ++G + TY ++ L K + ++ S +
Sbjct: 343 HGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLE 402
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM- 182
P++ Y +L+N + + D A + M +RGI Y L +C G E A+
Sbjct: 403 PDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQGMMERAMGL 462
Query: 183 --QMDKICKV-------------------------------ANKPLVVSYTGLIQACLDS 209
+MDK C + P V+Y+ LI
Sbjct: 463 FNEMDKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYSMLINMYAKL 522
Query: 210 GNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
G+++ A + QM + P++ + ++K Y G ++ +KL EM
Sbjct: 523 GDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDKVLKLIHEM 570
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 68/171 (39%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
LEPD Y+ ++N + + + A L ++Q+G K Y ++ M G
Sbjct: 401 LEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQGMMERAM 460
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F ++ K+ +A+AY +++ + G ++DM G+ A Y L
Sbjct: 461 GLFNEMDKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYSMLINMYA 520
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
G EEA + ++ P V + LI+ G + ++M+
Sbjct: 521 KLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDKVLKLIHEMR 571
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/146 (17%), Positives = 62/146 (42%), Gaps = 4/146 (2%)
Query: 16 TLGQAGHIKELFDVIDSMRSLPKKKF---KTGTLERWDPRLEPDIVVYNAVLNACVRRKQ 72
T+ Q G ELF I + ++ ++ G D D + Y+ +++ +
Sbjct: 430 TMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFNEMDKNCGLDAIAYSTMIHGACKSGD 489
Query: 73 WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YIPNALAYKV 131
+ ++Q + +G P A TY +++ + G +++ S ++P+ +
Sbjct: 490 MKTVKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDS 549
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGI 157
L+ EG+TD+ + + +M + +
Sbjct: 550 LIKGYSAEGQTDKVLKLIHEMRAKNV 575
>gi|302143623|emb|CBI22376.3| unnamed protein product [Vitis vinifera]
Length = 554
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 18/245 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDI+ YN ++ ++ + A +L ++ G P A TY ++ M G ++ F
Sbjct: 198 PDIITYNMLVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTILRCMFDHGGFDQAIGF 257
Query: 115 FRKVQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++ + P L Y VL+ + + T +A+ +EDM G Y L C
Sbjct: 258 WKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDMAIEGCYPDIVTYNSLVNYTCK 317
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG---NIQNAAYIFNQMKNFCSPNL 230
GK E+ + + + P V+Y L+ + G + I N P +
Sbjct: 318 QGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSLCTHGYWDEVDEILLIMNTTSQ--PPTV 375
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT NI++ ++GL + A+ F +M + +PDI T+NT+L A E
Sbjct: 376 VTYNILINGLCKYGLLDRAINFFDQMVSHN------------CLPDIITYNTLLAALCKE 423
Query: 291 KRWDD 295
D+
Sbjct: 424 GMVDE 428
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 36/351 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y + L + G +K +++D M SL PD + YN +L
Sbjct: 198 PDIITYNMLVGGLCKKGLLKTAIELLDEM-SLSG--------------CPPDAITYNTIL 242
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA-CGKYNLVYEFFRKVQKSYI 123
++ A + ++G TY +++E++ CG + +
Sbjct: 243 RCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDMAIEGCY 302
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG---KCEEA 180
P+ + Y LVN ++GK ++ + ++ G+ + Y L LC+ G + +E
Sbjct: 303 PDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSLCTHGYWDEVDEI 362
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
L+ M+ + P VV+Y LI G + A F+QM + C P+++T N ++ A
Sbjct: 363 LLIMN---TTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAA 419
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ G+ +EA+ L + + P + T+N ++D A + + +
Sbjct: 420 LCKEGMVDEALHLLHSLNDTR------------CSPGLITYNIVIDGLAKKGCMEKAMEL 467
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVE-LLEITWEHLARADRITPPAL 349
Y M+ G + H + R VE L I E R RI A
Sbjct: 468 YGEMIERGFAPDDITHRTLFWGLFRLDLVEDALVILKEMNKRNQRIKNSAF 518
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 90/198 (45%), Gaps = 16/198 (8%)
Query: 116 RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
R+ Q Y P+ + L+ L + T+ A ++ M G + Y L LC G
Sbjct: 158 RRNQIPYFPSCIN---LIRGLIKLESTERATRVLKIMVMSGGIPDIITYNMLVGGLCKKG 214
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA-AYIFNQMKNFCSPNLVTCN 234
+ A+ +D++ P ++Y +++ D G A + +Q++ C L+T
Sbjct: 215 LLKTAIELLDEMSLSGCPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYT 274
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
++++ +H +AM++ ++MA + + PDI T+N++++ + +++
Sbjct: 275 VLIELVCKHCGTVQAMEVLEDMAIEGCY------------PDIVTYNSLVNYTCKQGKYE 322
Query: 295 DLELVYKRMLHHGLHFNA 312
D L+ +L HG+ N
Sbjct: 323 DTALIIYNLLSHGMGPNT 340
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 15/182 (8%)
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
V IP+ + Y +LV L ++G A+ +++M G A Y + RC+ G
Sbjct: 192 VMSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTILRCMFDHGGF 251
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQ-ACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIM 236
++A+ + +++YT LI+ C G +Q + + C P++VT N +
Sbjct: 252 DQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDMAIEGCYPDIVTYNSL 311
Query: 237 VKAYLEHGLFEE-AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
V + G +E+ A+ ++ ++ P+ T+NT+L + WD+
Sbjct: 312 VNYTCKQGKYEDTALIIYNLLSHGMG-------------PNTVTYNTLLHSLCTHGYWDE 358
Query: 296 LE 297
++
Sbjct: 359 VD 360
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/219 (16%), Positives = 86/219 (39%), Gaps = 16/219 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+TV Y ++ +L G+ E+ +++ M + + P +V YN ++
Sbjct: 338 PNTVTYNTLLHSLCTHGYWDEVDEILLIMNTTSQP---------------PTVVTYNILI 382
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + + A Q+ P TY ++ + G + + +
Sbjct: 383 NGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCS 442
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y ++++ L ++G ++A+ +M RG + L L E+AL+
Sbjct: 443 PGLITYNIVIDGLAKKGCMEKAMELYGEMIERGFAPDDITHRTLFWGLFRLDLVEDALVI 502
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+ ++ K + ++ +I +G I+ A + ++
Sbjct: 503 LKEMNKRNQRIKNSAFRFVIHGLCAAGMIEEANQLHQKL 541
>gi|255554881|ref|XP_002518478.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542323|gb|EEF43865.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 606
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 140/329 (42%), Gaps = 35/329 (10%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHI------------KELFDVIDSMRSLPKKKFKTGTLER- 48
S PD+V Y S + G++ KE+ + + +L + G+LE
Sbjct: 231 SVKPDSVTYNSFVNGFCKIGNLAVAEEFKKEMLGKEIEPNVRTYATLVDGYTRVGSLENA 290
Query: 49 -------WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
+ L P+ V+YN++++ EGA +L + + P TY +V+E
Sbjct: 291 FRLCDELVEKGLLPNSVIYNSIIHWLSMEGDMEGASLLLSDMIDKRIYPDQFTYSIVIEG 350
Query: 102 MLACGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ G N ++F + + + S + +A ++ V++N L R A + +M RG+V
Sbjct: 351 LCRNGYLNEAFKFLQMILEMSLVRDAFSHNVVINYLCRSNNLAGAKQLLANMYVRGLVPD 410
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
+ L C GK E A+ +K+ K KP ++ Y +I G+ A + +
Sbjct: 411 VVTFGTLIDRHCKDGKVENAIQVYEKMIKTGEKPNLLIYNSVINGFAKEGSFDPAILLID 470
Query: 221 QMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
++ ++VT N ++ Y G ++A LF EM ++ T+
Sbjct: 471 TLRRMGLFDVVTYNTLIHGYCNCGKIDQAFALFSEMRNSG------------ILASHVTY 518
Query: 281 NTMLDA-CAAEKRWDDLELVYKRMLHHGL 308
NT++++ C A EL+ K M+ GL
Sbjct: 519 NTLINSLCKAGHVLQAKELM-KMMVLRGL 546
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 90/222 (40%), Gaps = 20/222 (9%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTLERWDPR--------- 52
YPD Y + L + G++ E F + + SL + F + + R
Sbjct: 338 YPDQFTYSIVIEGLCRNGYLNEAFKFLQMILEMSLVRDAFSHNVVINYLCRSNNLAGAKQ 397
Query: 53 ---------LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
L PD+V + +++ + + E A V +++ + G+KP+ Y V+
Sbjct: 398 LLANMYVRGLVPDVVTFGTLIDRHCKDGKVENAIQVYEKMIKTGEKPNLLIYNSVINGFA 457
Query: 104 ACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G ++ +++ + + + Y L++ GK D+A + +M GI+ S
Sbjct: 458 KEGSFDPAILLIDTLRRMGLFDVVTYNTLIHGYCNCGKIDQAFALFSEMRNSGILASHVT 517
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
Y L LC AG +A M + P V+YT LI +
Sbjct: 518 YNTLINSLCKAGHVLQAKELMKMMVLRGLIPDYVTYTILITS 559
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 107/251 (42%), Gaps = 17/251 (6%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK- 117
V++A++ C + EGA+ V+ +L+ G + + + +L N ++ +++
Sbjct: 95 VFDALVRTCTQIGATEGAYEVITKLQLDGFWVTVHAWNNFLSHLLKLNDVNRFWKMYKEM 154
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
V YI N + +++ L +EG+ EAVS + + GI + + + G
Sbjct: 155 VSYGYIENVNTFNLIIYALGKEGRLVEAVSVIYRSLKTGIWPNVVTFNMIIDGAIKMGAM 214
Query: 178 EEAL---MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTC 233
+ AL +M+ + + KP V+Y + GN+ A +M PN+ T
Sbjct: 215 DLALKLVRKMEVMSGCSVKPDSVTYNSFVNGFCKIGNLAVAEEFKKEMLGKEIEPNVRTY 274
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
+V Y G E A +L E+ E KGL +P+ +N+++ + E
Sbjct: 275 ATLVDGYTRVGSLENAFRLCDELVE-----------KGL-LPNSVIYNSIIHWLSMEGDM 322
Query: 294 DDLELVYKRML 304
+ L+ M+
Sbjct: 323 EGASLLLSDMI 333
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/155 (18%), Positives = 64/155 (41%), Gaps = 17/155 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y S+ + G +ID++R + G D+V YN ++
Sbjct: 444 PNLLIYNSVINGFAKEGSFDPAILLIDTLR-------RMGLF---------DVVTYNTLI 487
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + + AF + +++ G S TY ++ + G E + V + I
Sbjct: 488 HGYCNCGKIDQAFALFSEMRNSGILASHVTYNTLINSLCKAGHVLQAKELMKMMVLRGLI 547
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
P+ + Y +L+ + ++ +E + + M +G+V
Sbjct: 548 PDYVTYTILITSFSKKCSPEEVIELHDYMVLKGVV 582
>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
Length = 913
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 142/353 (40%), Gaps = 41/353 (11%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S YP+ +Y + L + G E F++ M KK + G D+ Y+
Sbjct: 225 SVYPNIPSYNVMINGLCKCGKFDESFEIWHRM-----KKNERGQ----------DLYTYS 269
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
+++ +GA V +++ + G P Y ++ L G+ E ++ ++K
Sbjct: 270 TLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKE 329
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
++Y +L+ L+ K DEA+S E + + + Y L LC G +AL
Sbjct: 330 GCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKAL 389
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAY 240
+++ +Y+ +I G + A + +QM K+ C PN CN ++ +
Sbjct: 390 SILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGF 449
Query: 241 LEHGLFEEAMKLFQEMAE------------------------DSNHINREYDKKGLVIPD 276
+ E+A++ F M ++ + +E +KG P+
Sbjct: 450 VRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWK-PN 508
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ T++ +++ K+ D ++ + L G + K H +I +GKVE
Sbjct: 509 MITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVE 561
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/306 (20%), Positives = 127/306 (41%), Gaps = 25/306 (8%)
Query: 49 WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY 108
W PD+ Y ++N+ + A + ++ ++G P Y ++++ G
Sbjct: 151 WGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDI 210
Query: 109 NLVYEFFRKVQK--SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
E + ++ K S PN +Y V++N L + GK DE+ M++ Y
Sbjct: 211 LNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYST 270
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC 226
L LC +G + A ++ + P VV Y ++ L +G I+ ++ M+
Sbjct: 271 LIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEG 330
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE------------------DSNHINR--- 265
+V+ NI+++ E+ +EA+ +++ + E + ++N+
Sbjct: 331 CRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALS 390
Query: 266 --EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDAS 323
E + G D + +++M++ E R D++ V +M HG N +I
Sbjct: 391 ILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFV 450
Query: 324 RAGKVE 329
RA K+E
Sbjct: 451 RASKLE 456
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 113/251 (45%), Gaps = 14/251 (5%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + R + D Y++++N R + + VL Q+ + G KP+ V+ +
Sbjct: 394 EAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRAS 453
Query: 107 KYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K FF V K P + Y L+N L + + EA + V++M ++G + Y
Sbjct: 454 KLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYS 513
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
L LC K + AL + + KP V + +I SG +++A ++++MK
Sbjct: 514 LLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQR 573
Query: 226 -CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
C PNLVT N +++ + + FE A K++ +HI +Y + PDI ++N L
Sbjct: 574 NCVPNLVTHNTLMEGFYKVRDFERASKIW-------DHI-LQYGLQ----PDIISYNITL 621
Query: 285 DACAAEKRWDD 295
+ R D
Sbjct: 622 KGLCSCHRISD 632
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/334 (21%), Positives = 141/334 (42%), Gaps = 22/334 (6%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRL-EPDIVV 59
M+S P +++ + + L + + DS+ P RL +P +V
Sbjct: 1 MASAPKSLSPKRVIKLLKSEKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVA 60
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQ-GQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
+ A + + A + Q++ + G +P +Y ++ ++ K++ FF
Sbjct: 61 H-----AYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYF 115
Query: 119 QKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+ + PN Y +L+ R+ + D+A + M +G Y L L G
Sbjct: 116 ETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYM 175
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--PNLVTCNI 235
+AL D++ + P V Y LI G+I NA+ I+ ++ S PN+ + N+
Sbjct: 176 SDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNV 235
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
M+ + G F+E+ +++ M + +++G D+YT++T++ D
Sbjct: 236 MINGLCKCGKFDESFEIWHRMKK---------NERG---QDLYTYSTLIHGLCGSGNLDG 283
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
VYK M +G+ + + M+ RAG++E
Sbjct: 284 ATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIE 317
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 127/290 (43%), Gaps = 29/290 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
DT AY S+ L + G + E+ V+D M K G +P+ V NAV+N
Sbjct: 403 DTFAYSSMINGLCREGRLDEVAGVLDQMT-------KHGC--------KPNPYVCNAVIN 447
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIP 124
VR + E A + +G P+ TY ++ + +++ Y ++ +QK + P
Sbjct: 448 GFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKP 507
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N + Y +L+N L + K D A++ +G ++ + LCS+GK E+AL
Sbjct: 508 NMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLY 567
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
++ + P +V++ L++ + + A+ I++ + + P++++ NI +K
Sbjct: 568 SEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGLCSC 627
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
+A+ + + V+P T+N ++ A K +
Sbjct: 628 HRISDAVGFLNDAVDRG------------VLPTAITWNILVQGYLALKGY 665
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/342 (18%), Positives = 128/342 (37%), Gaps = 65/342 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ +AG I+E ++ M K+ +T +V YN ++
Sbjct: 298 PDVVVYNTMLNGYLRAGRIEECLELWKVME---KEGCRT-------------VVSYNILI 341
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + A + + L ++ + TYG+++ + G N + +
Sbjct: 342 RGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGD 401
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ AY ++N L REG+ DE ++ M + G + + + A K E+AL
Sbjct: 402 LDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRF 461
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT---------- 232
+ P VV+Y LI + A + +M + PN++T
Sbjct: 462 FGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQ 521
Query: 233 -----------C--------------NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
C NI++ G E+A++L+ EM + +
Sbjct: 522 GKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRN------- 574
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH 309
+P++ T NT+++ + ++ ++ +L +GL
Sbjct: 575 -----CVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQ 611
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/221 (17%), Positives = 94/221 (42%), Gaps = 16/221 (7%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P V Y ++ L +A E + +L K+ + G W +P+++ Y+ +
Sbjct: 471 FPTVVTYNTLINGLSKAERFSEAY-------ALVKEMLQKG----W----KPNMITYSLL 515
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSY 122
+N + K+ + A + Q ++G KP + +++ + + GK + + ++ Q++
Sbjct: 516 MNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNC 575
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+PN + + L+ ++ + A + + + G+ Y + LCS + +A+
Sbjct: 576 VPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGLCSCHRISDAVG 635
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
++ P +++ L+Q L ++ MK
Sbjct: 636 FLNDAVDRGVLPTAITWNILVQGYLALKGYMEPVFVPASMK 676
>gi|449449102|ref|XP_004142304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial-like [Cucumis sativus]
gi|449510601|ref|XP_004163711.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial-like [Cucumis sativus]
Length = 849
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 123/290 (42%), Gaps = 52/290 (17%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D + Y ++ L ++ +KE + ++ M RL+P YN++
Sbjct: 489 DQLLYNNLIDALCKSDRLKESYKLLRDMEQ---------------SRLQPTHFTYNSIFG 533
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKP----------------------------------- 90
RR+ GA +L++++ G +P
Sbjct: 534 CLCRREDTVGAIELLREMRGHGHEPWIKHSTLLVKQLCKNGRAIEASNFLADMVCEGFLP 593
Query: 91 SATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAV 149
+Y M+ ++ K + E F+ + + P+ +++ +L+ + GK +EA + +
Sbjct: 594 DIVSYSAAMDGLVKINKLDRALELFQDICTRGCRPDVVSHNILIKGYCKAGKVNEAYNFL 653
Query: 150 EDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS 209
M G+V SA Y L C G ++A++ + ++ + KP ++SYT LI C +S
Sbjct: 654 HKMRVAGLVPSAVSYNLLINEWCKNGDIDKAILCLSQMNEENKKPTIISYTTLINGCCNS 713
Query: 210 GNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
G +A ++N+M+ CSPN +T +V + G +EA+ + M E
Sbjct: 714 GRPDDAKILWNEMQEKGCSPNRITYMAIVHGLCKCGKPDEALVYYHSMEE 763
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 128/278 (46%), Gaps = 18/278 (6%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV-- 111
E D ++YN +++A + + + ++ +L+ ++Q +P+ TY + + C + + V
Sbjct: 487 ERDQLLYNNLIDALCKSDRLKESYKLLRDMEQSRLQPTHFTYNSIFGCL--CRREDTVGA 544
Query: 112 YEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
E R+++ + P +LV L + G+ EA + + DM G + Y
Sbjct: 545 IELLREMRGHGHEPWIKHSTLLVKQLCKNGRAIEASNFLADMVCEGFLPDIVSYSAAMDG 604
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
L K + AL IC +P VVS+ LI+ +G + A ++M+ P+
Sbjct: 605 LVKINKLDRALELFQDICTRGCRPDVVSHNILIKGYCKAGKVNEAYNFLHKMRVAGLVPS 664
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
V+ N+++ + ++G ++A+ +M E+ +KK P I ++ T+++ C
Sbjct: 665 AVSYNLLINEWCKNGDIDKAILCLSQMNEE--------NKK----PTIISYTTLINGCCN 712
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
R DD ++++ M G N ++ ++ + GK
Sbjct: 713 SGRPDDAKILWNEMQEKGCSPNRITYMAIVHGLCKCGK 750
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 66/152 (43%), Gaps = 16/152 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V++ + +AG + E ++ + MR L P V YN ++
Sbjct: 628 PDVVSHNILIKGYCKAGKVNEAYNFLHKMRV---------------AGLVPSAVSYNLLI 672
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
N + + A L Q+ ++ +KP+ +Y ++ G+ + + ++Q K
Sbjct: 673 NEWCKNGDIDKAILCLSQMNEENKKPTIISYTTLINGCCNSGRPDDAKILWNEMQEKGCS 732
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERR 155
PN + Y +V+ L + GK DEA+ ME +
Sbjct: 733 PNRITYMAIVHGLCKCGKPDEALVYYHSMEEK 764
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 62/322 (19%), Positives = 127/322 (39%), Gaps = 35/322 (10%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
E I ++N+VL V + E ++LQ + G + + ++ +++
Sbjct: 397 EGMIFLFNSVLKFLVNAGKVESTCYLLQLM--MGNESRSDNIHILD-----------IHQ 443
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKT---DEAVSAVEDMERRGIVGSAALYYDLARC 170
F+K+ +PN ++ ++++ L + D A+S EDM + G LY +L
Sbjct: 444 TFKKL----LPNTASFNIVIHGLLKTTSKLDQDAALSLFEDMVQLGCERDQLLYNNLIDA 499
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPN 229
LC + + +E+ + + + +P +Y + + A + +M+ P
Sbjct: 500 LCKSDRLKESYKLLRDMEQSRLQPTHFTYNSIFGCLCRREDTVGAIELLREMRGHGHEPW 559
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+ ++VK ++G EA +M + +PDI +++ +D
Sbjct: 560 IKHSTLLVKQLCKNGRAIEASNFLADMVCEG------------FLPDIVSYSAAMDGLVK 607
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPAL 349
+ D +++ + G + H +I +AGKV + H R + P A+
Sbjct: 608 INKLDRALELFQDICTRGCRPDVVSHNILIKGYCKAGKVN-EAYNFLHKMRVAGLVPSAV 666
Query: 350 IKERFCNR-LENKDYGSAISCL 370
N +N D AI CL
Sbjct: 667 SYNLLINEWCKNGDIDKAILCL 688
>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1245
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 138/309 (44%), Gaps = 19/309 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
P + NA+L + V+ + + L+++ ++ P T+ +++ V+ A G +
Sbjct: 154 FNPSVYTCNAILGSIVKSCEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFKKSS 213
Query: 113 EFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+K++KS Y P + Y +++ ++G+ A+ ++ M +G+ Y L L
Sbjct: 214 YLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDL 273
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C + + + + + + K P V+Y L+ + G + A + N+M F SPN
Sbjct: 274 CRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNH 333
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT N ++ ++ G F+EA+K+F M + KGL+ ++ ++ +LD
Sbjct: 334 VTFNALIDGHISEGNFKEALKMFHMM-----------EAKGLIGTEV-SYGVLLDGLCKN 381
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR----ADRITP 346
+D Y RM +G+ + MI + G ++ + +++ D +T
Sbjct: 382 AEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTY 441
Query: 347 PALIKERFC 355
ALI FC
Sbjct: 442 SALING-FC 449
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 113/238 (47%), Gaps = 18/238 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME--VMLACGKYNL 110
++PDIV Y+A++N R + + A ++ ++ + G P+ Y ++ + C K +
Sbjct: 434 IDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETI 493
Query: 111 -VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
+YE + + P+ + VLV +L + GK EA + M GI+ +A + L
Sbjct: 494 RIYE--AMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLIN 551
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSP 228
S+G+ +A D++ KV + P +Y L++ G++ A ++N +
Sbjct: 552 GYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAV 611
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+ V CN ++ A + G ++A+ LF EM + S ++PD +T+ +++
Sbjct: 612 DTVMCNTLITAMCKSGNLDKAVSLFGEMVQRS------------ILPDSFTYTSLISG 657
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 116/262 (44%), Gaps = 14/262 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P+ V YN +LN + A +L ++ G P+ T+ +++ ++ G +
Sbjct: 294 IHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKEAL 353
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F ++ K I ++Y VL++ L + + D A M+R G+ Y + L
Sbjct: 354 KMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGL 413
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C G +EA++ ++++ K P +V+Y+ LI G ++ A I ++ SPN
Sbjct: 414 CKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNG 473
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+ + ++ G +E +++++ M + N PD +TFN ++ +
Sbjct: 474 IIYSTLIYNCCRMGCLKETIRIYEAMILEGN------------TPDHFTFNVLVTSLCKA 521
Query: 291 KRWDDLELVYKRMLHHGLHFNA 312
+ + E + M G+ NA
Sbjct: 522 GKVAEAEEFMRCMTSDGILPNA 543
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 115/293 (39%), Gaps = 59/293 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + + +L +AG + E + + M S G L P+ V ++ ++
Sbjct: 506 PDHFTFNVLVTSLCKAGKVAEAEEFMRCMTS-------DGIL--------PNAVSFDCLI 550
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME------------------------ 100
N + AF V ++ + G P+ TYG +++
Sbjct: 551 NGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAA 610
Query: 101 ---------VMLACGKYNL---VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSA 148
+ C NL V F VQ+S +P++ Y L++ L R+GKT A+
Sbjct: 611 VDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILF 670
Query: 149 VEDMERRG-IVGSAALYYDLARCLCSAGKCEEAL---MQMDKICKVANKPLVVSYTGLIQ 204
++ E RG +V + +Y + AG+ + QMDK+ + VV+ +I
Sbjct: 671 AKEAEARGNLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRD---VVTTNAMID 727
Query: 205 ACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
G I+ + +M N PNL T NI++ Y + + L++ M
Sbjct: 728 GYSRMGKIEKTHDLLFEMGNQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRSM 780
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 12/215 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+E D +N +++ C + AF ++ + G T ++ V+ ++
Sbjct: 820 VEVDRHTFNMLISKCCANGEINWAFDMVNVMTSLGISLDKNTCDAIVSVLNRNHRFQESR 879
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI----VGSAALYYDL 167
++ K I P + Y L+N L R G A E+M I V +A+ L
Sbjct: 880 MVLHEMSKQGISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRAL 939
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227
A+C GK +EA + + + K+ P + S+T L+ +GN+ A + M N C
Sbjct: 940 AKC----GKADEASLLLRSMLKMKLVPTIASFTTLMHLFCKNGNVTEALELRVVMSN-CG 994
Query: 228 --PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
+LV+ N+++ G A +LF+EM D
Sbjct: 995 LKLDLVSYNVLITGLCAKGDMAIAFELFEEMKRDG 1029
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 98/237 (41%), Gaps = 24/237 (10%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++ YN +L+ +RK +F + + + G P T ++L + N++ E
Sbjct: 752 PNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPDKLT---CYSIILGICESNML-EI 807
Query: 115 FRKVQKSYIPNAL-----AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
K+ K++I + + +L++ G+ + A V M GI +
Sbjct: 808 GLKILKAFICRGVEVDRHTFNMLISKCCANGEINWAFDMVNVMTSLGISLDKNTCDAIVS 867
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCS 227
L + +E+ M + ++ K P Y GL+ G+I+ A + +M C
Sbjct: 868 VLNRNHRFQESRMVLHEMSKQGISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICP 927
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
PN V + MV+A + G +EA L + M K ++P I +F T++
Sbjct: 928 PN-VAESAMVRALAKCGKADEASLLLRSML------------KMKLVPTIASFTTLM 971
>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Cucumis sativus]
Length = 728
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 139/331 (41%), Gaps = 35/331 (10%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLER 48
M P+ + Y S+ L + G +K+ F++++ M SL K G ER
Sbjct: 308 MGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTER 367
Query: 49 W---------DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM 99
+P++ Y A+++ + ++ A + +++K+QG P+ TY ++
Sbjct: 368 AFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLI 427
Query: 100 EVMLACGKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ G ++ YE + + + PN Y +V+ L + G+ +EA + + I
Sbjct: 428 DGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIE 487
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
Y L C +AL+ ++K+ KV +P + YT LI A ++++ +
Sbjct: 488 ADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKL 547
Query: 219 FNQ-MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI 277
F++ +K +P T M+ Y A+K FQ+M++ PD
Sbjct: 548 FDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHG------------CAPDS 595
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
++ ++ E R D+ +Y M+ GL
Sbjct: 596 ISYGALISGLCKESRLDEARQLYDTMIDKGL 626
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 93/215 (43%), Gaps = 16/215 (7%)
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P++ YK ++ R G EA + +M RG V A + C A+
Sbjct: 242 PDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWF 301
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
K+ K+ P +++Y+ +I G+++ A + +M KN PN+ T ++ +
Sbjct: 302 FHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCK 361
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G E A +LF ++ N+ P+++T+ M+ E++ E++++R
Sbjct: 362 KGWTERAFRLFLKLIRSDNY-----------KPNVHTYTAMISGYCKEEKLSRAEMLFER 410
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV----ELLEI 333
M GL N + +I +AG EL+E+
Sbjct: 411 MKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMEL 445
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 99/245 (40%), Gaps = 17/245 (6%)
Query: 55 PDIVVYNAVL-NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
PD Y ++ C E W+ + + ++G T L++ N
Sbjct: 242 PDSCTYKYIIVGYCRNGNVLEADRWICEMM-ERGFVVDNATLTLIITAFCEKSLVNRAVW 300
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
FF KV K + PN + Y +++ L + G +A +E+M + G + + L LC
Sbjct: 301 FFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLC 360
Query: 173 SAGKCEEALMQMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
G E A K+ + N KP V +YT +I + A +F +MK PN
Sbjct: 361 KKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNT 420
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T ++ + + G F +A +L + M+ + P+ T+N+++D
Sbjct: 421 NTYTTLIDGHCKAGNFSKAYELMELMSNEG------------FFPNTCTYNSIVDGLCKR 468
Query: 291 KRWDD 295
R ++
Sbjct: 469 GRAEE 473
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 80/220 (36%), Gaps = 16/220 (7%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+T Y SI L + G +E F +++ TG + ++E D V Y +
Sbjct: 452 FPNTCTYNSIVDGLCKRGRAEEAFKLLN-----------TG----FQNQIEADGVTYTIL 496
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SY 122
++ +R A L ++ + G +P Y ++ + F +V K
Sbjct: 497 ISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGL 556
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P Y ++ RE K AV + M G + Y L LC + +EA
Sbjct: 557 APTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQ 616
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
D + P V+ L + + +A I ++
Sbjct: 617 LYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERL 656
>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Brachypodium distachyon]
Length = 673
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 118/268 (44%), Gaps = 18/268 (6%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D L ++ YN ++ A + ++ + A +Q++K QG KP TY ++ + C
Sbjct: 406 DKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHL--CNNNQ 463
Query: 110 LV---YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
+ Y F + + + NA+ Y L++ L R G +A+S DM G Y
Sbjct: 464 MEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNG 523
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-F 225
L + LC G + ++M + ++ + KP VSY LI + +++A + +M N
Sbjct: 524 LIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQE 583
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
+P++VT N ++ + G A+ L +++ + H DI T+N ++
Sbjct: 584 LTPDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDVH------------ADIITYNILIS 631
Query: 286 ACAAEKRWDDLELVYKRMLHHGLHFNAK 313
+ D ++ R + G+ N +
Sbjct: 632 WHCKARLLHDASMLLNRAVTSGITPNER 659
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 104/257 (40%), Gaps = 20/257 (7%)
Query: 76 AFWVLQQLKQQ-GQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIP-NALAYKVL 132
A +L QL + PS +Y V+ + V +R+ V + +P + +
Sbjct: 119 ALHLLDQLPHRFAVSPSFRSYNTVLAAFARADCHTDVLSLYRRMVHRDRVPPTTFTFSIA 178
Query: 133 VNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVAN 192
L R G+ DEA++ + M R G V LY + LC+ G EA +D++ +
Sbjct: 179 ARALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMGC 238
Query: 193 KPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMK 251
V ++ ++ G ++ AA + ++M C PN +T ++K EEA
Sbjct: 239 SADVNTFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEART 298
Query: 252 LFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
+ + E ++ FNT++ C + + + +Y+ M G +
Sbjct: 299 MLGRVPE----------------LNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPD 342
Query: 312 AKRHLRMILDASRAGKV 328
A + +I + G++
Sbjct: 343 AHTYSILIHGLCKLGRL 359
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/358 (19%), Positives = 134/358 (37%), Gaps = 60/358 (16%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV Y+++ L G + E ++D M F G D+ +N ++
Sbjct: 205 PDTVLYQTVIHALCAQGGVNEAATLLDEM-------FLMGC--------SADVNTFNDIV 249
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME------------------------ 100
+ + A ++ ++ +G P+A TYG +++
Sbjct: 250 HGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTMLGRVPELNVV 309
Query: 101 ----VMLAC---GKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM 152
V+ C GK E + + K P+A Y +L++ L + G+ A+ + +M
Sbjct: 310 LFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREM 369
Query: 153 ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI 212
E +G S Y L C G + ++ + + Y G+I A +
Sbjct: 370 EDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRM 429
Query: 213 QNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKG 271
+A +MK+ P++ T N ++ + EEA LF+ + +
Sbjct: 430 DDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEG----------- 478
Query: 272 LVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
V+ + T+NT++ A W D + M+ HG + + +I R G V+
Sbjct: 479 -VVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVD 535
>gi|255549371|ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545176|gb|EEF46686.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 613
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 144/332 (43%), Gaps = 36/332 (10%)
Query: 6 DTVAYRSIAVTL-----GQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
D V Y + TL G +G I E V + M LER +E DI V+
Sbjct: 279 DKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKM------------LERG---VEADIHVF 323
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
++++ + + AF + +L ++G +A TYG ++ G+ + ++Q
Sbjct: 324 TSIISWQCKLGNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQS 383
Query: 121 SYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ N + + L+N ++G DEA+ + ME++G Y +A LC + EE
Sbjct: 384 QGLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEE 443
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVK 238
A + + + P VS+T +I GN+ A +F MK PN+VT N ++
Sbjct: 444 AKRWLFTMVEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLID 503
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLE 297
Y + G +EA +L EM + G+ DIYT+ T++ C K + L
Sbjct: 504 GYSKKGKLKEAYRLKDEM-----------ESIGMT-SDIYTYTTLVHGECVFGKVEEALT 551
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
L+ + GL + + +I S+ G+ E
Sbjct: 552 LL-NEVCRKGLAISIVTYTAIISGLSKEGRSE 582
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 121/271 (44%), Gaps = 22/271 (8%)
Query: 56 DIVVYNA--VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
D+ VY+ V++ ++ + E A ++ ++ +G KP+ TY ++ + + V E
Sbjct: 212 DVTVYSMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFEGVNE 271
Query: 114 FFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R ++ + NA Y +L+ GK EA E M RG+ ++ + C
Sbjct: 272 MLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISWQC 331
Query: 173 SAGKCEEALMQMDKICK---VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSP 228
G + A D++ + VAN +Y LI +SG + A + N+M++
Sbjct: 332 KLGNMKRAFALFDELNERGLVANAH---TYGALIHGTCNSGQLDAAEMLVNEMQSQGLDM 388
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
NLV N ++ Y + G+ +EA+++ Q++ E KKG DI+T+NT+
Sbjct: 389 NLVIFNTLINGYCKKGMIDEALRM-QDVME----------KKGFE-NDIFTYNTIAGGLC 436
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
R ++ + M+ G+ NA MI
Sbjct: 437 KLNRHEEAKRWLFTMVEKGVDPNAVSFTIMI 467
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 7/174 (4%)
Query: 53 LEPDIVVYNAVLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
E DI YN + C + E W+ + ++G P+A ++ +++++ C + NLV
Sbjct: 421 FENDIFTYNTIAGGLCKLNRHEEAKRWLFTMV-EKGVDPNAVSFTIMIDI--HCKEGNLV 477
Query: 112 YE---FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
F +K PN + Y L++ ++GK EA ++ME G+ Y L
Sbjct: 478 EAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMESIGMTSDIYTYTTLV 537
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
C GK EEAL ++++C+ +V+YT +I G + A ++++M
Sbjct: 538 HGECVFGKVEEALTLLNEVCRKGLAISIVTYTAIISGLSKEGRSEEAFRLYDEM 591
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/321 (20%), Positives = 133/321 (41%), Gaps = 49/321 (15%)
Query: 46 LERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
LE ++P++V YN ++NA ++ +EG +L+ ++ +A TY L++E +
Sbjct: 239 LEMTGKGIKPNVVTYNTLVNAYIKIMDFEGVNEMLRLMEMDKVVYNAATYTLLIEWYGSS 298
Query: 106 GKYNLVYEFFRKV------------------------------------QKSYIPNALAY 129
GK + F K+ ++ + NA Y
Sbjct: 299 GKIAEAEKVFEKMLERGVEADIHVFTSIISWQCKLGNMKRAFALFDELNERGLVANAHTY 358
Query: 130 KVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK 189
L++ G+ D A V +M+ +G+ + ++ L C G +EAL D + K
Sbjct: 359 GALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEK 418
Query: 190 VANKPLVVSYTGLIQA-CLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEE 248
+ + +Y + C + + + ++F ++ PN V+ IM+ + + G E
Sbjct: 419 KGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEKGVDPNAVSFTIMIDIHCKEGNLVE 478
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
A ++FQ+M KKG P++ T+NT++D + + + + + M G+
Sbjct: 479 AERVFQDMK-----------KKG-EKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMESIGM 526
Query: 309 HFNAKRHLRMILDASRAGKVE 329
+ + ++ GKVE
Sbjct: 527 TSDIYTYTTLVHGECVFGKVE 547
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 98/206 (47%), Gaps = 2/206 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+ ++V++N ++N ++ + A + ++++G + TY + + ++
Sbjct: 386 LDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAK 445
Query: 113 E-FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
F V+K PNA+++ ++++ +EG EA +DM+++G + Y L
Sbjct: 446 RWLFTMVEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGY 505
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
GK +EA D++ + + +YT L+ G ++ A + N++ + + ++
Sbjct: 506 SKKGKLKEAYRLKDEMESIGMTSDIYTYTTLVHGECVFGKVEEALTLLNEVCRKGLAISI 565
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEM 256
VT ++ + G EEA +L+ EM
Sbjct: 566 VTYTAIISGLSKEGRSEEAFRLYDEM 591
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 6/163 (3%)
Query: 47 ERW-----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
+RW + ++P+ V + +++ + A V Q +K++G+KP+ TY +++
Sbjct: 445 KRWLFTMVEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDG 504
Query: 102 MLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
GK Y +++ + Y LV+ GK +EA++ + ++ R+G+ S
Sbjct: 505 YSKKGKLKEAYRLKDEMESIGMTSDIYTYTTLVHGECVFGKVEEALTLLNEVCRKGLAIS 564
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLI 203
Y + L G+ EEA D++ P YT L+
Sbjct: 565 IVTYTAIISGLSKEGRSEEAFRLYDEMMAAGLTPDDRVYTSLV 607
>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 873
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 15/242 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P++ +N +++ E A ++ Q+ + G P TY V+ + + V
Sbjct: 207 VQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVR 266
Query: 113 EFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ +++ S PN Y +LV+ + EA +E M +G++ Y + R L
Sbjct: 267 DLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGL 326
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C GK +EA+ DK+ P VV+Y LI C + A + +MK N
Sbjct: 327 CDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENG 386
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAA 289
VT NIM+K + G +EA + +M E PD +T+NTM++ C A
Sbjct: 387 VTHNIMIKWFCTEGKIDEASNVMVKMVESG------------FSPDCFTYNTMINGYCKA 434
Query: 290 EK 291
K
Sbjct: 435 GK 436
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 128/279 (45%), Gaps = 14/279 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
PD YN ++N + + A+ ++ ++ ++G K T ++ M + + Y
Sbjct: 417 FSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAY 476
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
K +K YI + + Y L+ +++ + D A+ E+M+ GIV + Y + R L
Sbjct: 477 TLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGL 536
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
C +GK ++A+ +++++ + P + +I G ++ A N+M ++ P++
Sbjct: 537 CLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDI 596
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
TCNI+++ G+ E+ + LF + KG + D T+N ++ + E
Sbjct: 597 FTCNILLRGLCREGMLEKGLTLFN-----------TWISKGKPM-DTVTYNIIISSFCKE 644
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+R +D + M L + + ++ ++AG+ E
Sbjct: 645 RRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTE 683
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/292 (20%), Positives = 114/292 (39%), Gaps = 62/292 (21%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ L + + ++ D++ M+ + L P+ YN ++
Sbjct: 244 PDNVTYNTVLTALCKRSQLTQVRDLLLQMK---------------NSGLFPNRNTYNILV 288
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ + K + A V++ + +G P TY ++ + GK + K++ +
Sbjct: 289 HGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLV 348
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ + +D A VE+M+ RG+ + + + + C+ GK +EA
Sbjct: 349 PDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNV 408
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
M K+ + P +Y N M+ Y +
Sbjct: 409 MVKMVESGFSPDCFTY----------------------------------NTMINGYCKA 434
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
G EA K+ EM +KGL + D +T NT+L EK+ DD
Sbjct: 435 GKMAEAYKMMDEMG-----------RKGLKL-DTFTLNTLLHTMCLEKQLDD 474
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 103/249 (41%), Gaps = 28/249 (11%)
Query: 109 NLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVE---DMERRGIVGSAALY 164
+L ++ F K+++ + PN L L+N L R + V + E D + G+ + +
Sbjct: 155 HLGHQIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTF 214
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
L CS EEAL ++++ + P V+Y ++ A + + QMKN
Sbjct: 215 NILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKN 274
Query: 225 F-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE------------------DSNHIN- 264
PN T NI+V Y + +EA ++ + M D I+
Sbjct: 275 SGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDE 334
Query: 265 ----REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMIL 320
R+ + ++PD+ T+NT++D C + D + + M G+ N H MI
Sbjct: 335 AVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIK 394
Query: 321 DASRAGKVE 329
GK++
Sbjct: 395 WFCTEGKID 403
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 97/237 (40%), Gaps = 17/237 (7%)
Query: 46 LERWDPRLEPDIV----VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
L+ W+ E IV YN ++ + + A L +L ++G P +T +++
Sbjct: 511 LKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHG 570
Query: 102 MLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
G ++F K V+ S P+ +L+ L REG ++ ++ +G
Sbjct: 571 YCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMD 630
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF- 219
Y + C + E+A M ++ +P +Y ++ +G + A +
Sbjct: 631 TVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLAL 690
Query: 220 ------NQMKNF-CSPNLVTCNIM----VKAYLEHGLFEEAMKLFQEMAEDSNHINR 265
Q+K SP L T ++M + + G +++AMKLFQ+ + +N+
Sbjct: 691 KFAEKGQQVKTQDTSPELGTSDMMYSEQISSLCTQGKYKDAMKLFQQAEQKGVSLNK 747
>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
Length = 608
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 113/249 (45%), Gaps = 14/249 (5%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQ 119
N ++N R + A +L ++ + G P+A+T+ ++ + GK E F + V+
Sbjct: 127 NVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVR 186
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ + PN ++Y ++N L + G T AV + ME+ G Y + LC +
Sbjct: 187 RGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVND 246
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVK 238
A+ + ++ P V +Y ++ G + A +F +M P+ VT I+V
Sbjct: 247 AMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVD 306
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G+ EA +F+ M E KG V P+I T+N ++D ++ ++ +
Sbjct: 307 GLCKEGMVSEARLVFETMTE-----------KG-VEPNISTYNALMDGYCLQRLMNEAKK 354
Query: 299 VYKRMLHHG 307
V++ M+ G
Sbjct: 355 VFEIMIRQG 363
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/369 (21%), Positives = 148/369 (40%), Gaps = 43/369 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P + ++ L G IKE ++ + M + R EP+++ YN +
Sbjct: 155 HPTASTFNALINGLCNEGKIKEAVELFNEM------------VRRGH---EPNVISYNTI 199
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
+N + A V ++++Q G KP TY +++ + N EF ++ I
Sbjct: 200 INGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGI 259
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN Y +V+ G+ +EA ++M R ++ L LC G EA +
Sbjct: 260 PPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARL 319
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ + + +P + +Y L+ + A +F M + C+P + + NI++ +
Sbjct: 320 VFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFC 379
Query: 242 EHGLFEEAMKLFQEM------------------------AEDSNHINREYDKKGLVIPDI 277
+ +EA L EM +++ +I +E GL +P++
Sbjct: 380 KSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGL-LPNL 438
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEH 337
T++ +LD D+ + K M L N H +I AGK+E+ + +
Sbjct: 439 VTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSK 498
Query: 338 LARADRITP 346
L AD I P
Sbjct: 499 LF-ADGIRP 506
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 109/233 (46%), Gaps = 14/233 (6%)
Query: 74 EGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP-NALAYKVL 132
+ A ++ + +PS +G + +Y+ V ++ + N + VL
Sbjct: 70 DDALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVL 129
Query: 133 VNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVAN 192
+N L R D AVS + M + GI +A+ + L LC+ GK +EA+ +++ + +
Sbjct: 130 INCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGH 189
Query: 193 KPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMK 251
+P V+SY +I +GN A +F +M +N C P++VT N ++ + + L +AM+
Sbjct: 190 EPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAME 249
Query: 252 LFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
EM + + P+++T+N M+ + ++ ++K M+
Sbjct: 250 FLSEMLDRG------------IPPNVFTYNCMVHGFCILGQLNEATRLFKEMV 290
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/337 (20%), Positives = 135/337 (40%), Gaps = 34/337 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL---------------- 46
PD V Y +I +L + + + + + M R +P F +
Sbjct: 226 PDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRL 285
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E + PD V +++ + A V + + ++G +P+ +TY +M+
Sbjct: 286 FKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCL 345
Query: 105 CGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
N + F +++ P +Y +L+N + + DEA S + +M + +
Sbjct: 346 QRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVT 405
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L + LC G+ +EAL ++C P +V+Y+ L+ G++ A + M+
Sbjct: 406 YSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQ 465
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
PN+V I+++ G E A +LF ++ D + P I T+
Sbjct: 466 EKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADG------------IRPTIRTYTV 513
Query: 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
M+ E D+ ++++M G N+ + MI
Sbjct: 514 MIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMI 550
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 99/206 (48%), Gaps = 4/206 (1%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P + YN ++N + ++ + A +L ++ + P TY +M+ + G+
Sbjct: 366 PGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNI 425
Query: 115 FRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F+++ +PN + Y +L++ + G DEA+ ++ M+ + + + + L +
Sbjct: 426 FKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFI 485
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--FCSPNLV 231
AGK E A K+ +P + +YT +I+ L G A +F +M++ F PN
Sbjct: 486 AGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFL-PNSC 544
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMA 257
+ N+M++ +L++ A++L EM
Sbjct: 545 SYNVMIQGFLQNQDSSTAIRLIDEMV 570
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 85/194 (43%), Gaps = 4/194 (2%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + L PD V Y+ ++ + + + A + +++ G P+ TY ++++ G
Sbjct: 393 EMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHG 452
Query: 107 KYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ + + +Q+ + PN + + +L+ ++ GK + A + GI + Y
Sbjct: 453 HLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYT 512
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--K 223
+ + L G +EA K+ P SY +IQ L + + A + ++M K
Sbjct: 513 VMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGK 572
Query: 224 NFCSPNLVTCNIMV 237
F S NL T +++
Sbjct: 573 RF-SANLSTFQMLL 585
>gi|414874000|tpg|DAA52557.1| TPA: hypothetical protein ZEAMMB73_743775 [Zea mays]
Length = 630
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 105/234 (44%), Gaps = 13/234 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P ++ Y AV++ V+ + E A+ V Q++ QG PS + V+ G+ +
Sbjct: 299 PGLMTYGAVVDGLVKCGRVEDAWKVAQEMGGQGLAPSEFVFSAVITGFCKSGEVDRALMV 358
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ + + + PN + Y +++ R G+ EA E+M + + Y + R
Sbjct: 359 WETMVAARVKPNVVLYSAMIDGFARSGRMTEAEKLFEEMVDAKCIPNIVTYSSMVRGYFH 418
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF-NQMKNFCSPNLVT 232
AL +++ KV P +SY+ LI D G +++A ++ N + C+P+ +
Sbjct: 419 IANSSRALSTWEEMIKVGCVPTAISYSILISGLCDVGRLKDAMMVWKNMIGRGCAPDTIA 478
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
M+K G+ + ++LF +M KG PD+ ++N +LDA
Sbjct: 479 YTSMMKGLCMSGMVDGGLRLFNDML-----------AKGDAKPDVISYNVLLDA 521
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 128/274 (46%), Gaps = 26/274 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKF----------KTGTLER---- 48
P + Y ++ L + G +++ + V M + L +F K+G ++R
Sbjct: 299 PGLMTYGAVVDGLVKCGRVEDAWKVAQEMGGQGLAPSEFVFSAVITGFCKSGEVDRALMV 358
Query: 49 WD----PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
W+ R++P++V+Y+A+++ R + A + +++ P+ TY ++
Sbjct: 359 WETMVAARVKPNVVLYSAMIDGFARSGRMTEAEKLFEEMVDAKCIPNIVTYSSMVRGYFH 418
Query: 105 CGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
+ + ++ K +P A++Y +L++ L G+ +A+ ++M RG
Sbjct: 419 IANSSRALSTWEEMIKVGCVPTAISYSILISGLCDVGRLKDAMMVWKNMIGRGCAPDTIA 478
Query: 164 YYDLARCLCSAGKCEEAL-MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
Y + + LC +G + L + D + K KP V+SY L+ A + + ++ A + NQM
Sbjct: 479 YTSMMKGLCMSGMVDGGLRLFNDMLAKGDAKPDVISYNVLLDALIRTNDLPRAMDLLNQM 538
Query: 223 KN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
+ C P+ +TCNI ++ E G+ E + F E
Sbjct: 539 LDQMCDPDTITCNIFLR---EFGVLEGKGREFLE 569
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 133/328 (40%), Gaps = 51/328 (15%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD Y+ V++A E A ++ ++ G SA + V++ ML G N
Sbjct: 193 LVPDKFTYSTVVSALADAGCVEEAVALVHEMVVDGVV-SAEAFNPVLKAMLRAGDVNGAV 251
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS----AALYYDL 167
+ FR +Q K A+ Y VL++ L G+ A++ + ME GIV A+ L
Sbjct: 252 KLFRFMQLKGCTLTAVTYNVLLHGLLLCGEARAAMNIMRRMENEGIVPGLMTYGAVVDGL 311
Query: 168 ARC-------------------------------LCSAGKCEEALMQMDKICKVANKPLV 196
+C C +G+ + ALM + + KP V
Sbjct: 312 VKCGRVEDAWKVAQEMGGQGLAPSEFVFSAVITGFCKSGEVDRALMVWETMVAARVKPNV 371
Query: 197 VSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
V Y+ +I SG + A +F +M + C PN+VT + MV+ Y A+ ++E
Sbjct: 372 VLYSAMIDGFARSGRMTEAEKLFEEMVDAKCIPNIVTYSSMVRGYFHIANSSRALSTWEE 431
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
M K G V P +++ ++ R D +V+K M+ G + +
Sbjct: 432 MI-----------KVGCV-PTAISYSILISGLCDVGRLKDAMMVWKNMIGRGCAPDTIAY 479
Query: 316 LRMILDASRAGKVE-LLEITWEHLARAD 342
M+ +G V+ L + + LA+ D
Sbjct: 480 TSMMKGLCMSGMVDGGLRLFNDMLAKGD 507
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 93/209 (44%), Gaps = 3/209 (1%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P V++AV+ + + + A V + + KP+ Y +++ G+
Sbjct: 332 LAPSEFVFSAVITGFCKSGEVDRALMVWETMVAARVKPNVVLYSAMIDGFARSGRMTEAE 391
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F + V IPN + Y +V + + A+S E+M + G V +A Y L L
Sbjct: 392 KLFEEMVDAKCIPNIVTYSSMVRGYFHIANSSRALSTWEEMIKVGCVPTAISYSILISGL 451
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPN 229
C G+ ++A+M + P ++YT +++ SG + +FN M K P+
Sbjct: 452 CDVGRLKDAMMVWKNMIGRGCAPDTIAYTSMMKGLCMSGMVDGGLRLFNDMLAKGDAKPD 511
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
+++ N+++ A + AM L +M +
Sbjct: 512 VISYNVLLDALIRTNDLPRAMDLLNQMLD 540
>gi|298714808|emb|CBJ25707.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1273
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 122/286 (42%), Gaps = 27/286 (9%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D PD+V +N + AC + + E A VL +++ G + +YG+ M+ G +
Sbjct: 638 DKDAGPDVVCFNYAMTACAKAGECELAHRVLSRIQACGLAANLVSYGICMDAYAKAGLWE 697
Query: 110 LVYEFFRKVQKSYI-PNALAYKVLVNTL----WREGKTDEAVSAVEDMERRGIVGSAALY 164
E + + + PN + + V L W D+A + M+ R I + Y
Sbjct: 698 KALELLAEARSQGLSPNIVTFTTAVRGLACNDW-----DKAEEILSMMKSRAIKPNEVTY 752
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
+L +G +AL Q+++ + P +++Y + C +G + A + QM+
Sbjct: 753 TELISICGRSGDVHQALAQLERARRNGLSPNLINYNACVDVCAKTGEVDRALALLEQMQT 812
Query: 225 ----FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280
+P+LVT N ++ A + G + + LF E+ K + DI +F
Sbjct: 813 SGDPALTPDLVTFNSVINACAKAGDWALTLWLFSEI------------KAAGLKADIQSF 860
Query: 281 NTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
N LDAC + + KRM GL +A + IL A RAG
Sbjct: 861 NAALDACTKGSNPEAALALLKRMKSQGLEPDAISYQSAIL-ACRAG 905
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 131/331 (39%), Gaps = 29/331 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + Y + + G + +++ M++ DP L PD+V +N+V+
Sbjct: 782 PNLINYNACVDVCAKTGEVDRALALLEQMQT------------SGDPALTPDLVTFNSVI 829
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
NAC + W W+ ++K G K ++ ++ ++++ +
Sbjct: 830 NACAKAGDWALTLWLFSEIKAAGLKADIQSFNAALDACTKGSNPEAALALLKRMKSQGLE 889
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+A++Y+ + G AV + DME++G+ A Y + + G AL
Sbjct: 890 PDAISYQSAILACRAGGDGASAVMLLRDMEQQGLEPRDADYNLVIETVGREGDWAGALEL 949
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ + +Y + AC N A + +MK+ +P N ++ +
Sbjct: 950 LKSMKAEGIAADAYTYGAAVGACAKGRNPDLARALLEEMKDLGLTPTRFCWNSIISVHSR 1009
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYK 301
G AM L EM + +P D TF+ M+ CA + WD + +
Sbjct: 1010 TGNTTAAMTLMDEMKQS--------------MPCDETTFSAMMHGCAQTRDWDAAGRLLE 1055
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLE 332
M GL N + +++ A RAG++ L E
Sbjct: 1056 EMNAAGLKPNDACYYTLLVAACRAGELRLAE 1086
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/311 (22%), Positives = 126/311 (40%), Gaps = 27/311 (8%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+ DI +NA L+AC + E A +L+++K QG +P A +Y + A G
Sbjct: 853 LKADIQSFNAALDACTKGSNPEAALALLKRMKSQGLEPDAISYQSAILACRAGGDGASAV 912
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
R + Q+ P Y +++ T+ REG A+ ++ M+ GI A Y A
Sbjct: 913 MLLRDMEQQGLEPRDADYNLVIETVGREGDWAGALELLKSMKAEGIAADA-YTYGAAVGA 971
Query: 172 CSAGKCEE-ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNL 230
C+ G+ + A ++++ + P + +I +GN A + ++MK +
Sbjct: 972 CAKGRNPDLARALLEEMKDLGLTPTRFCWNSIISVHSRTGNTTAAMTLMDEMKQSMPCDE 1031
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN-------------------REYDKKG 271
T + M+ + ++ A +L +EM N E KG
Sbjct: 1032 TTFSAMMHGCAQTRDWDAAGRLLEEMNAAGLKPNDACYYTLLVAACRAGELRLAEGLIKG 1091
Query: 272 L----VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
+ PD+Y++ T+ AC W + + M G+ K + + R G+
Sbjct: 1092 MRKDGAAPDLYSYTTLSAACGRFHDWRMALRLIESMKIDGIPATKKIYAAALAACGR-GE 1150
Query: 328 VELLEITWEHL 338
E+ EI E +
Sbjct: 1151 AEIAEILLEMM 1161
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 139/346 (40%), Gaps = 41/346 (11%)
Query: 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN------- 109
+V +NA ++A + A +L++ K +G KP+ TY + AC K
Sbjct: 495 VVGWNAAMHAASVTGEPGKALELLEEAKSKGVKPTEVTYATAIG---ACAKATTNVKANA 551
Query: 110 -----LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
L+ E + Y P A++ + L A+ + M G ++A Y
Sbjct: 552 RKAVLLLEEMEAAGLEPYPP---AHQAALTVLAASEGHRAAMDLLAKMRENGTRLTSASY 608
Query: 165 YDLARCLCSAGKCEEALMQMDKICK--VANK---PLVVSYTGLIQACLDSGNIQNAAYIF 219
+ G A+ +D + + V +K P VV + + AC +G + A +
Sbjct: 609 SPALKSAAQVGDWRNAIALIDVMTRASVTDKDAGPDVVCFNYAMTACAKAGECELAHRVL 668
Query: 220 NQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
++++ + NLV+ I + AY + GL+E+A++L E +GL P+I
Sbjct: 669 SRIQACGLAANLVSYGICMDAYAKAGLWEKALELLA-----------EARSQGLS-PNIV 716
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
TF T + A WD E + M + N + +I R+G V E
Sbjct: 717 TFTTAVRGLACND-WDKAEEILSMMKSRAIKPNEVTYTELISICGRSGDVHQALAQLER- 774
Query: 339 ARADRITPPALIKERFCNRL--ENKDYGSAISCLVSHPVSGSPEFS 382
AR + ++P LI C + + + A++ L SG P +
Sbjct: 775 ARRNGLSPN-LINYNACVDVCAKTGEVDRALALLEQMQTSGDPALT 819
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/262 (19%), Positives = 104/262 (39%), Gaps = 19/262 (7%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P+ V Y +++ C R A L++ ++ G P+ Y ++V G+ +
Sbjct: 745 IKPNEVTYTELISICGRSGDVHQALAQLERARRNGLSPNLINYNACVDVCAKTGEVDRAL 804
Query: 113 EFFRKVQKS----YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
++Q S P+ + + ++N + G + +++ G+ ++ A
Sbjct: 805 ALLEQMQTSGDPALTPDLVTFNSVINACAKAGDWALTLWLFSEIKAAGLKADIQ-SFNAA 863
Query: 169 RCLCSAGKCEEALMQMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFC 226
C+ G EA + + K K +P +SY I AC G+ +A + M +
Sbjct: 864 LDACTKGSNPEAALALLKRMKSQGLEPDAISYQSAILACRAGGDGASAVMLLRDMEQQGL 923
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
P N++++ G + A++L + M + + D YT+ + A
Sbjct: 924 EPRDADYNLVIETVGREGDWAGALELLKSMKAEG------------IAADAYTYGAAVGA 971
Query: 287 CAAEKRWDDLELVYKRMLHHGL 308
CA + D + + M GL
Sbjct: 972 CAKGRNPDLARALLEEMKDLGL 993
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 70/359 (19%), Positives = 129/359 (35%), Gaps = 38/359 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P Y + T+G+ G +++ SM++ + D Y A +
Sbjct: 925 PRDADYNLVIETVGREGDWAGALELLKSMKA---------------EGIAADAYTYGAAV 969
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
AC + + + A +L+++K G P+ + ++ V G ++++S
Sbjct: 970 GACAKGRNPDLARALLEEMKDLGLTPTRFCWNSIISVHSRTGNTTAAMTLMDEMKQSMPC 1029
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ + +++ + D A +E+M G+ + A YY L C AG+ A +
Sbjct: 1030 DETTFSAMMHGCAQTRDWDAAGRLLEEMNAAGLKPNDACYYTLLVAACRAGELRLAEGLI 1089
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHG 244
+ K P + SYT L AC + + A + MK P A G
Sbjct: 1090 KGMRKDGAAPDLYSYTTLSAACGRFHDWRMALRLIESMKIDGIPATKKIYAAALAACGRG 1149
Query: 245 LFEEAMKLFQEMAEDS---NHINREY----------DKKGLVI----------PDIYTFN 281
E A L + M + + R + K LV+ P++ FN
Sbjct: 1150 EAEIAEILLEMMRSQGVELDDVGRSHALVAFGRGGRPDKALVLMDDIREKGPPPNLQCFN 1209
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
++ACA D + M G+ N ++ R K +L + E ++R
Sbjct: 1210 GAIEACALADDIDGGISLLAEMGRAGIVPNGVSFRSLVSACERKDKPDLKKDLREAMSR 1268
>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Glycine max]
Length = 623
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 131/282 (46%), Gaps = 14/282 (4%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
D LEPD YN+ ++ + + E A ++ ++ + G P+A TY +++ G +
Sbjct: 279 DKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLD 338
Query: 110 LVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
Y + + + K + + + Y + ++ L+ EG+ +A + +++M +G++ A + L
Sbjct: 339 KAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILI 398
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCS 227
C G + A +D++ +P +V+YT LI ++ A +F++++
Sbjct: 399 NGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLL 458
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P+++ N ++ + +G + A +L +EM V+PD T+NT++
Sbjct: 459 PDIIVFNALIDGHCANGNIDRAFQLLKEMDNMK------------VLPDEITYNTLMQGY 506
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
E + ++ + M G+ + + +I S+ G ++
Sbjct: 507 CREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMK 548
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/340 (22%), Positives = 138/340 (40%), Gaps = 40/340 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y S L + G ++E +I M + L P+ V YNA++
Sbjct: 284 PDCYTYNSFISGLCKEGRLEEASGLICKM---------------LEGGLVPNAVTYNALI 328
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ + + A+ ++ +G S TY L + + G+ +++ +K +
Sbjct: 329 DGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMM 388
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+A+ + +L+N R G A +++M +GI + Y L L + +EA
Sbjct: 389 PDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADAL 448
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
KI + P ++ + LI +GNI A + +M N P+ +T N +++ Y
Sbjct: 449 FSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCR 508
Query: 243 HGLFEEAMKLFQEMAEDS---NHINRE-----YDKKGLVI---------------PDIYT 279
G EEA +L EM +HI+ Y K+G + P I T
Sbjct: 509 EGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILT 568
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
+N ++ + + E + K M+ G+ + +L +I
Sbjct: 569 YNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSII 608
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 79/196 (40%), Gaps = 13/196 (6%)
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F+ +K ++PN +++ + +T A +M R I S + + LC
Sbjct: 169 FYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCK 228
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVT 232
GK ++A + + + KP VV+Y +I G Q A IF MK+ P+ T
Sbjct: 229 EGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYT 288
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N + + G EEA L +M E G ++P+ T+N ++D +
Sbjct: 289 YNSFISGLCKEGRLEEASGLICKMLE------------GGLVPNAVTYNALIDGYCNKGD 336
Query: 293 WDDLELVYKRMLHHGL 308
D M+ G+
Sbjct: 337 LDKAYAYRDEMISKGI 352
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 75/188 (39%), Gaps = 21/188 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKE---LFDVIDSMRSLPK---------KKFKTGTLERW--- 49
P V Y S+ LG+ +KE LF I LP G ++R
Sbjct: 424 PTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQL 483
Query: 50 -----DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ ++ PD + YN ++ R + E A +L ++K++G KP +Y ++
Sbjct: 484 LKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSK 543
Query: 105 CGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G + ++ + + P L Y L+ L + + + A +++M +GI +
Sbjct: 544 RGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDST 603
Query: 164 YYDLARCL 171
Y + +
Sbjct: 604 YLSIIEAM 611
>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
Length = 1153
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 128/298 (42%), Gaps = 29/298 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y I +G++ I+E+ V M +K + E V YN ++
Sbjct: 806 PDEFTYNLILDAMGKSMRIEEMLRVQAEMH---RKGY------------ESTYVTYNTII 850
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ V+ K+ E A + L +G P+ TYG +++ +L GK F + ++
Sbjct: 851 SGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCK 910
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN Y +L+N G T+ E M +GI Y L LC+AG+ + L
Sbjct: 911 PNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSY 970
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ ++ +P ++ Y LI S I+ A +FN+M K PNL T N ++ +
Sbjct: 971 FRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGK 1030
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
G EA ++++E+ KG P+++T+N ++ + D+ Y
Sbjct: 1031 AGKASEAAQMYEELL-----------IKGWK-PNVFTYNALIRGYSVSGSTDNAYAAY 1076
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 115/249 (46%), Gaps = 27/249 (10%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+P+ +YN +LN E + +++ +QG P +Y ++++ + G+ N
Sbjct: 910 KPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLS 969
Query: 114 FFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+FR++ + P+ + Y +L++ L + + +EAV +M+++GIV + Y L L
Sbjct: 970 YFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLG 1029
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVT 232
AGK EA +++ KP V +Y LI+ SG+ NA + + + V
Sbjct: 1030 KAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYSVSGSTDNA---------YAAYDCVA 1080
Query: 233 CNIMVKAYLEHGLFEE-----AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
+ +K L GL +E A LF EM K+ PD +T+N +LDA
Sbjct: 1081 VGVSLKTALISGLVDENLINIAEGLFAEM------------KRRGCGPDQFTYNLILDAI 1128
Query: 288 AAEKRWDDL 296
R +++
Sbjct: 1129 GKSMRIEEM 1137
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 125/290 (43%), Gaps = 15/290 (5%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
YN ++ V+ A V + + + G PS TY ++M + V ++
Sbjct: 180 TYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEM 239
Query: 119 QKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+ + PN +Y + + L + + DEA + ME G + + + LC AG+
Sbjct: 240 EARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRL 299
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIM 236
+A K+ KP V+Y L+ C DSG+ Q+ I+N M + + N+V+ +
Sbjct: 300 SDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAV 359
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
V A + G +EA+ +F EM E KG + P+ Y++N+++ +D
Sbjct: 360 VDALCQVGRLDEALAVFDEMKE-----------KG-ISPEQYSYNSLISGFLKADMFDRA 407
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
++ M G N H+ I ++G+ +EH+ ++ I P
Sbjct: 408 LELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHM-KSKGIVP 456
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 122/280 (43%), Gaps = 16/280 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P++ Y + + +++ A+ +L +++ G KP T+ +V++V+ G+ +
Sbjct: 244 VKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAK 303
Query: 113 EFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F K++ S P+ + Y L++ G + + M G + Y + L
Sbjct: 304 DVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDAL 363
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC--SPN 229
C G+ +EAL D++ + P SY LI L + A +FN M N C SPN
Sbjct: 364 CQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHM-NACGPSPN 422
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
T + + Y + G +A++ ++ M K ++PD+ N +L + A
Sbjct: 423 GYTHVLFINYYGKSGQSLKAIQRYEHM------------KSKGIVPDVAAANAVLSSLAR 470
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
R + V+ + G+ + + MI S+A K +
Sbjct: 471 SGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKAD 510
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/383 (19%), Positives = 146/383 (38%), Gaps = 66/383 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ +Y LGQA E + ++ M D +PD+V + V+
Sbjct: 246 PNVYSYTICIRVLGQAARFDEAYQILGKME---------------DSGCKPDVVTHTVVI 290
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ A V ++K QKP TY +++ G V E + V Y
Sbjct: 291 QVLCDAGRLSDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYN 350
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA--------- 174
N ++Y +V+ L + G+ DEA++ ++M+ +GI Y L A
Sbjct: 351 DNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALEL 410
Query: 175 -----------------------GKCEEALMQMDKICKVANK---PLVVSYTGLIQACLD 208
GK ++L + + + +K P V + ++ +
Sbjct: 411 FNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLAR 470
Query: 209 SGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
SG + A +F ++K+ SP+ +T +M+K + +EAM F +M E
Sbjct: 471 SGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETG------- 523
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
+PD+ N+++D + ++ ++ ++ + + ++ R GK
Sbjct: 524 -----CVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGK 578
Query: 328 VELLEITWEHLARADRITPPALI 350
V+ + E + + I PP LI
Sbjct: 579 VKEVMHLLEEMTHS--IHPPNLI 599
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/283 (20%), Positives = 120/283 (42%), Gaps = 27/283 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD A ++ +L ++G + + K+ F E D + PD + Y ++
Sbjct: 456 PDVAAANAVLSSLARSGRL-----------GMAKRVF----YELKDMGVSPDTITYTMMI 500
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
C + + + A + + G P +++ + GK N ++ F ++++ I
Sbjct: 501 KCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIE 560
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P Y L++ L REGK E + +E+M + Y + CL G+ A+
Sbjct: 561 PTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGM 620
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
+ + + P + SY ++ + + A +F QMK +P+ T ++ +++++
Sbjct: 621 LYSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFRMFCQMKKILAPDYATLCTILPSFVKN 680
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
GL +EA+ H +EY K D +F+++++
Sbjct: 681 GLMKEAL-----------HTVKEYILKADCNTDKSSFHSLMEG 712
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/282 (19%), Positives = 114/282 (40%), Gaps = 29/282 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+ V+Y ++ L Q G + E V D M+ + + P+ YN++++
Sbjct: 352 NIVSYTAVVDALCQVGRLDEALAVFDEMK---------------EKGISPEQYSYNSLIS 396
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIP 124
++ ++ A + + G P+ T+ L + G+ + + ++ K +P
Sbjct: 397 GFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVP 456
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
+ A ++++L R G+ A +++ G+ Y + +C A K +EA+
Sbjct: 457 DVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFF 516
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243
+ + P V++ LI G A +F+Q+K P T N ++
Sbjct: 517 SDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGRE 576
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
G +E M L +EM + P++ T+NT+LD
Sbjct: 577 GKVKEVMHLLEEMTHSIHP------------PNLITYNTVLD 606
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 79/390 (20%), Positives = 150/390 (38%), Gaps = 77/390 (19%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P Y ++ LG+ G +KE+ +++ M P P+++ Y
Sbjct: 557 MKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEMT------------HSIHP---PNLITY 601
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N VL+ + + A +L + ++G P ++Y VM ++ ++ + F +++K
Sbjct: 602 NTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFRMFCQMKK 661
Query: 121 --------------SYIPNAL----------------------AYKVLVNTLWREGKTDE 144
S++ N L ++ L+ + + ++
Sbjct: 662 ILAPDYATLCTILPSFVKNGLMKEALHTVKEYILKADCNTDKSSFHSLMEGILNKAGVEK 721
Query: 145 AVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204
++ E++ RGI+ + L R LC K EA +K + SY LI+
Sbjct: 722 SIEFAENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIR 781
Query: 205 ACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM---AEDS 260
+D I A +F +MK C P+ T N+++ A + EE +++ EM +S
Sbjct: 782 GLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYES 841
Query: 261 NHINREYDKKGLVIP-------DIY-------------TFNTMLDACAAEKRWDDLELVY 300
++ GLV D+Y T+ +LD + D E ++
Sbjct: 842 TYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLF 901
Query: 301 KRMLHHGLHFNAKRHLRMILDASR-AGKVE 329
ML +G N + ++L+ R AG E
Sbjct: 902 NEMLEYGCKPNCTIY-NILLNGHRIAGNTE 930
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/299 (18%), Positives = 121/299 (40%), Gaps = 30/299 (10%)
Query: 67 CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPN 125
C +K E A + + K G +Y ++ ++ ++ + F ++++ P+
Sbjct: 749 CKHKKALE-AHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPD 807
Query: 126 ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMD 185
Y ++++ + + + +E + +M R+G + Y + L + + E+A+
Sbjct: 808 EFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYY 867
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHG 244
+ P +Y L+ L +G + +A +FN+M + C PN NI++ + G
Sbjct: 868 NLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAG 927
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVI-------------------------PDIYT 279
E ++F++M E IN + ++I PD+
Sbjct: 928 NTENVCQIFEKMVEQG--INPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLII 985
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
+N ++D +R ++ ++ M G+ N + +IL +AGK +E L
Sbjct: 986 YNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEEL 1044
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 111/258 (43%), Gaps = 14/258 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++ ++ + V + + A L +++ G + TY ++ ++ G
Sbjct: 139 VKANVGTFATVFSGVGVQGGLRSAPVALPVMREAGMSLNGYTYNGLIYFLVKSGFDAEAM 198
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E ++ V+ P+ Y VL+ + ++ D + + +ME RG+ + Y R L
Sbjct: 199 EVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVL 258
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
A + +EA + K+ KP VV++T +IQ D+G + +A +F +MK + P+
Sbjct: 259 GQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDR 318
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
VT ++ + G + M+++ M D + N I ++ ++DA
Sbjct: 319 VTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDN------------IVSYTAVVDALCQV 366
Query: 291 KRWDDLELVYKRMLHHGL 308
R D+ V+ M G+
Sbjct: 367 GRLDEALAVFDEMKEKGI 384
>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
Length = 599
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 84/391 (21%), Positives = 148/391 (37%), Gaps = 68/391 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P + Y SI QAG+++ + ++ M + + ++ +Y VL
Sbjct: 120 PGGIVYNSIVQAYCQAGNMETVEALLAQME---------------EEGFQGNLGLYTTVL 164
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + E +LK G P+A TYG ++++ G + ++ K +
Sbjct: 165 NGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVS 224
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y ++++ R G A EDM G+ +Y L C AG+ ++AL
Sbjct: 225 PNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGV 284
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-------------------- 223
++ I P + +YT ++ + GNIQ A +F+++K
Sbjct: 285 LENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAK 344
Query: 224 ----------------NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
N PN + + + Y G E+A +FQ M
Sbjct: 345 ARQMENARLMLNEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRM----------- 393
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
K+ L I DI + +L AC V++++ GL N + M+ +R G+
Sbjct: 394 KKENLAI-DIVAYGALLKACCKSGAMQRAAEVFQQITDAGLKHNRITYCTMLDGWARKGE 452
Query: 328 V----ELLEITWEHLARADRITPPALIKERF 354
+ +LL +H D I + IK F
Sbjct: 453 LSKARDLLNDMQKHGFHLDTICYTSFIKACF 483
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/355 (21%), Positives = 137/355 (38%), Gaps = 35/355 (9%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P Y ++ + A +L+++ + G P+ Y ++M+ G + +
Sbjct: 188 LSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAF 247
Query: 113 EFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ + V P+ + Y +LV+ + G+ D+A+ +E++E ++ + Y +
Sbjct: 248 KVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGY 307
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
G ++AL D+I +P VVSY L+ + ++NA + N+M N PN
Sbjct: 308 VKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNE 367
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN------------------------RE 266
+ + + Y G E+A +FQ M +++ I+ ++
Sbjct: 368 RSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAAEVFQQ 427
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
GL I T+ TMLD A + + M HG H + + I R+G
Sbjct: 428 ITDAGLKHNRI-TYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICYTSFIKACFRSG 486
Query: 327 K----VELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSG 377
E L + E + T LI L D AISC SG
Sbjct: 487 DTEEVTETLAVMREKKLEVNARTYTTLIH----GWLAAADPDQAISCYEQAKASG 537
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/244 (19%), Positives = 102/244 (41%), Gaps = 14/244 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P++ +Y ++++A + EGA +++ QG + + + ++ + G
Sbjct: 48 IKPNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAE 107
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+F K + ++ +P + Y +V + G + + + ME G G+ LY +
Sbjct: 108 HWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGF 167
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNL 230
E+ L ++ P +Y +++ +GN+ A I +M K+ SPN
Sbjct: 168 AEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNK 227
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+ +++ Y G F A K++++M + PDI +N ++ A
Sbjct: 228 MIYAMIMDGYARGGDFTAAFKVWEDMVSAG------------LKPDIVIYNILVHAFCKA 275
Query: 291 KRWD 294
R D
Sbjct: 276 GRMD 279
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 92/252 (36%), Gaps = 56/252 (22%)
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVS 147
KP YGL+++ G F ++ S+I PN Y L++ + AV+
Sbjct: 14 KPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVA 73
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
E+M +GI + A++ + SAG E A +K P + Y ++QA
Sbjct: 74 CTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYC 133
Query: 208 DSGNIQNAAYIFNQMKN------------------------------------FCSPNLV 231
+GN++ + QM+ SP
Sbjct: 134 QAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAA 193
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA----- 286
T +VK + + G +A+ + +EM DK G V P+ + ++D
Sbjct: 194 TYGCIVKLFTKAGNMAKALDILEEM-----------DKHG-VSPNKMIYAMIMDGYARGG 241
Query: 287 --CAAEKRWDDL 296
AA K W+D+
Sbjct: 242 DFTAAFKVWEDM 253
>gi|428671933|gb|EKX72848.1| pentatricopeptide repeat domain containing protein [Babesia equi]
Length = 1104
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 121/255 (47%), Gaps = 20/255 (7%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN----LVYEFF 115
++ +L+ C++ K + ++ + + G +P A TYG++++ + CG + L EF
Sbjct: 700 FSCILDCCLKLKNSKRLLRLINKFRLWGLQPQAQTYGVIIKSLSCCGMIDECNRLWDEFV 759
Query: 116 RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG-SAALYYDLARCLCSA 174
K + + PN + Y + + + D+AV EDM+ +G V + +Y L +
Sbjct: 760 NK--RGFEPNEVTYGCMFDAYVNNNRVDDAVRLFEDMKSQGKVKPNTIMYTTLIKGYGQN 817
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTC 233
+ ++AL + +C V+Y +I AC G++ AA + M N P+L+T
Sbjct: 818 KQLDKALKMFNMMCSENVAANTVTYNSIIDACARVGDMNGAASLLEDMLNNNIEPDLITF 877
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
+ ++K Y +++ +L M E +G ++PD+ +N++L+ C
Sbjct: 878 STIIKGYCVQSNMDKSFQLLSIMYE-----------RG-IMPDVILYNSLLEGCVKSGLL 925
Query: 294 DDLELVYKRMLHHGL 308
E ++++M +G+
Sbjct: 926 WLCEKLWQQMQQYGI 940
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/277 (20%), Positives = 124/277 (44%), Gaps = 14/277 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNLV 111
EP+ V Y + +A V + + A + + +K QG+ KP+ Y +++ + +
Sbjct: 764 FEPNEVTYGCMFDAYVNNNRVDDAVRLFEDMKSQGKVKPNTIMYTTLIKGYGQNKQLDKA 823
Query: 112 YEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ F + ++ N + Y +++ R G + A S +EDM I + + +
Sbjct: 824 LKMFNMMCSENVAANTVTYNSIIDACARVGDMNGAASLLEDMLNNNIEPDLITFSTIIKG 883
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPN 229
C +++ + + + P V+ Y L++ C+ SG + ++ QM+ + P+
Sbjct: 884 YCVQSNMDKSFQLLSIMYERGIMPDVILYNSLLEGCVKSGLLWLCEKLWQQMQQYGIPPS 943
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
T I++K Y +G ++ +L ++ + ++Y G I + + + ++ AC
Sbjct: 944 NFTLTILIKMYGRNGQLDKVFEL-------ADTLPKQY---GFTI-NTHVYTCLMSACIT 992
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
R+ + VYK M G+ +AK +I AS+ G
Sbjct: 993 NGRYSMILEVYKCMKSAGIKADAKTFETLIQGASKGG 1029
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/171 (18%), Positives = 72/171 (42%), Gaps = 21/171 (12%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+TV Y SI + G + +++ M + +EPD++ ++ ++
Sbjct: 838 NTVTYNSIIDACARVGDMNGAASLLEDM---------------LNNNIEPDLITFSTIIK 882
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P 124
+ + +F +L + ++G P Y ++E + G L + ++++Q+ I P
Sbjct: 883 GYCVQSNMDKSFQLLSIMYERGIMPDVILYNSLLEGCVKSGLLWLCEKLWQQMQQYGIPP 942
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERR-GIVGSAALYYDLARCLCSA 174
+ +L+ R G+ D+ + + ++ G + +Y CL SA
Sbjct: 943 SNFTLTILIKMYGRNGQLDKVFELADTLPKQYGFTINTHVY----TCLMSA 989
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,035,482,589
Number of Sequences: 23463169
Number of extensions: 286285445
Number of successful extensions: 764221
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3474
Number of HSP's successfully gapped in prelim test: 6068
Number of HSP's that attempted gapping in prelim test: 654364
Number of HSP's gapped (non-prelim): 51289
length of query: 455
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 309
effective length of database: 8,933,572,693
effective search space: 2760473962137
effective search space used: 2760473962137
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)