BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048235
(455 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKR|A Chain A, Crystal Structure Of Yeast AlphaEPSILON-Cop Subcomplex Of
The Copi Vesicular Coat
Length = 291
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 212 IQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE-MAEDSNH 262
+Q+A YIF +M + CSP L+ N ++ G +E A + QE + +DS H
Sbjct: 182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233
>pdb|1VSY|5 Chain 5, Proteasome Activator Complex
pdb|1VSY|8 Chain 8, Proteasome Activator Complex
pdb|3L5Q|6 Chain 6, Proteasome Activator Complex
pdb|3L5Q|8 Chain 8, Proteasome Activator Complex
Length = 997
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 136 LWREGKTDEAVSAVEDMERRGIVGSAAL-YYDLARCLCSAGKCEEALMQMDKICK 189
L RE D ++ V+D E RG+ S + ++ L L S+G CE + + ++C+
Sbjct: 460 LTREFLRDVTMNLVQDNETRGVFSSGNVSFFSLVILLISSGFCELNMSDLFELCE 514
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 106 GKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
G Y+ E+++K + Y NA A+ L N +++G DEA+ + +A +Y
Sbjct: 23 GDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-YPNNAEAWY 81
Query: 166 DLARCLCSAGKCEEALMQMDKICKV 190
+L G +EA+ K ++
Sbjct: 82 NLGNAYYKQGDYDEAIEYYQKALEL 106
>pdb|2X3A|A Chain A, Asap1 Inactive Mutant E294q, An Extracellular Toxic Zinc
Metalloendopeptidase
pdb|2X3C|A Chain A, Asap1 Inactive Mutant E294q, An Extracellular Toxic Zinc
Metalloendopeptidase
Length = 343
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 102 MLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSA-VEDMERRGIVGS 160
M A G+Y++ Y+ + ++ A A + TLW EG DE V A V E + + GS
Sbjct: 115 MSAQGQYSIRYQLPARRKRPRAKQAQASESNAITLWVEGVNDERVQAKVAAAEPQAVAGS 174
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVAN 192
+ C+ + + L +D ++N
Sbjct: 175 VSF-----SGRCTNTQKSDLLTALDAASGISN 201
>pdb|2X3B|A Chain A, Asap1 Inactive Mutant E294a, An Extracellular Toxic Zinc
Metalloendopeptidase
pdb|2X3B|B Chain B, Asap1 Inactive Mutant E294a, An Extracellular Toxic Zinc
Metalloendopeptidase
Length = 343
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 102 MLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSA-VEDMERRGIVGS 160
M A G+Y++ Y+ + ++ A A + TLW EG DE V A V E + + GS
Sbjct: 115 MSAQGQYSIRYQLPARRKRPRAKQAQASESNAITLWVEGVNDERVQAKVAAAEPQAVAGS 174
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVAN 192
+ C+ + + L +D ++N
Sbjct: 175 VSF-----SGRCTNTQKSDLLTALDAASGISN 201
>pdb|1ZTC|A Chain A, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
pdb|1ZTC|B Chain B, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
pdb|1ZTC|C Chain C, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
pdb|1ZTC|D Chain D, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
Length = 221
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 73/171 (42%), Gaps = 23/171 (13%)
Query: 204 QACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH----GLFEEAMKLFQEMAE 258
+ +D GN+ + + + SP+ +T + +L+H LFE A E+ +
Sbjct: 46 RIIIDPGNLSSXDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVLFENATFYVHEVYK 105
Query: 259 DSNHINREYDKKGLVIPDIYT-----FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK 313
N+++ G ++ IY+ + ++ E +D+ V+ H A+
Sbjct: 106 TKNYLSF-----GTIVGRIYSKVISSWKNVVLLKGEESLFDEKVKVFHTPWH------AR 154
Query: 314 RHLRMILDASRAGKVELL-EITWEHLARADRITPPALIK-ERFCNRLENKD 362
HL +LD AG+V + +IT L+ D I ++ + F +R+ D
Sbjct: 155 EHLSFLLDTENAGRVLITGDITPNRLSYYDIIKGYGSVQVKNFLDRVGRID 205
>pdb|3MPG|A Chain A, Dihydroorotase From Bacillus Anthracis
pdb|3MPG|B Chain B, Dihydroorotase From Bacillus Anthracis
Length = 428
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 305 HHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPA 348
+H H + K +R+I DA RAG E+T HL + P A
Sbjct: 227 YHVCHVSTKGSVRVIRDAKRAGIKVTAEVTPHHLVLCEDDIPSA 270
>pdb|3GRI|A Chain A, The Crystal Structure Of A Dihydroorotase From
Staphylococcus Aureus
pdb|3GRI|B Chain B, The Crystal Structure Of A Dihydroorotase From
Staphylococcus Aureus
Length = 424
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 305 HHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
+H H + K +R+I DA RAG E+T HL
Sbjct: 226 YHVCHVSTKESVRVIRDAKRAGIHVTAEVTPHHL 259
>pdb|3K7N|A Chain A, Structures Of Two Elapid Snake Venom Metalloproteases With
Distinct Activities Highlight The Disulfide Patterns In
The D Domain Of Adamalysin Family Proteins
Length = 397
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 10/47 (21%)
Query: 141 KTDEAVSAVEDMERR-GIVGSA---------ALYYDLARCLCSAGKC 177
KT+E+V+ V+D RR +V S +++D A C+C G C
Sbjct: 121 KTNESVAIVQDYNRRISLVASTITHELGHNLGIHHDKASCICIPGPC 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,556,663
Number of Sequences: 62578
Number of extensions: 549825
Number of successful extensions: 1341
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1325
Number of HSP's gapped (non-prelim): 20
length of query: 455
length of database: 14,973,337
effective HSP length: 102
effective length of query: 353
effective length of database: 8,590,381
effective search space: 3032404493
effective search space used: 3032404493
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)