BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048235
(455 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SA76|PPR64_ARATH Pentatricopeptide repeat-containing protein At1g30610, chloroplastic
OS=Arabidopsis thaliana GN=EMB2279 PE=2 SV=1
Length = 1006
Score = 631 bits (1628), Expect = e-180, Method: Compositional matrix adjust.
Identities = 305/473 (64%), Positives = 362/473 (76%), Gaps = 40/473 (8%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+SSYPD VAYRSIAVTLGQAGHIKELF VID+MRS PKKKFK TLE+WDPRLEPD+VVY
Sbjct: 537 ISSYPDMVAYRSIAVTLGQAGHIKELFYVIDTMRSPPKKKFKPTTLEKWDPRLEPDVVVY 596
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
NAVLNACV+RKQWEGAFWVLQQLKQ+GQKPS TYGL+MEVMLAC KYNLV+EFFRK+QK
Sbjct: 597 NAVLNACVQRKQWEGAFWVLQQLKQRGQKPSPVTYGLIMEVMLACEKYNLVHEFFRKMQK 656
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
S IPNALAY+VLVNTLW+EGK+DEAV VEDME RGIVGSAALYYDLARCLCSAG+C E
Sbjct: 657 SSIPNALAYRVLVNTLWKEGKSDEAVHTVEDMESRGIVGSAALYYDLARCLCSAGRCNEG 716
Query: 181 L----------------------------MQMDKICKVANKPLVVSYTGLIQACLDSGNI 212
L Q+ KIC+VANKPLVV+YTGLIQAC+DSGNI
Sbjct: 717 LNMVNFVNPVVLKLIENLIYKADLVHTIQFQLKKICRVANKPLVVTYTGLIQACVDSGNI 776
Query: 213 QNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGL 272
+NAAYIF+QMK CSPNLVTCNIM+KAYL+ GLFEEA +LFQ+M+ED NHI D +
Sbjct: 777 KNAAYIFDQMKKVCSPNLVTCNIMLKAYLQGGLFEEARELFQKMSEDGNHIKNSSDFESR 836
Query: 273 VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLE 332
V+PD YTFNTMLD CA +++WDD Y+ ML HG HFNAKRHLRM+L+ASRAGK E++E
Sbjct: 837 VLPDTYTFNTMLDTCAEQEKWDDFGYAYREMLRHGYHFNAKRHLRMVLEASRAGKEEVME 896
Query: 333 ITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPE------FSRNAW 386
TWEH+ R++RI P LIKERF +LE D+ SAIS L ++G E FS +AW
Sbjct: 897 ATWEHMRRSNRIPPSPLIKERFFRKLEKGDHISAISSLAD--LNGKIEETELRAFSTSAW 954
Query: 387 LKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQS 439
+ F QD++++L+ + + L +R+ S VL NL+SSCKD+L+T++
Sbjct: 955 SRVL----SRFEQDSVLRLMDDVNRRLGSRSESSDSVLGNLLSSCKDYLKTRT 1003
>sp|Q9FJW6|PP451_ARATH Pentatricopeptide repeat-containing protein At5g67570,
chloroplastic OS=Arabidopsis thaliana GN=DG1 PE=1 SV=2
Length = 798
Score = 332 bits (851), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 175/431 (40%), Positives = 262/431 (60%), Gaps = 16/431 (3%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD AY IAVTLGQAG +KEL VI+ MR P K K + WDP LEPD+VVYNA+
Sbjct: 288 YPDMAAYHCIAVTLGQAGLLKELLKVIERMRQKPTKLTKNLRQKNWDPVLEPDLVVYNAI 347
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-Y 122
LNACV QW+ WV +L++ G +P+ TYGL MEVML GK++ V++FFRK++ S
Sbjct: 348 LNACVPTLQWKAVSWVFVELRKNGLRPNGATYGLAMEVMLESGKFDRVHDFFRKMKSSGE 407
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P A+ YKVLV LWREGK +EAV AV DME++G++G+ ++YY+LA CLC+ G+ +A++
Sbjct: 408 APKAITYKVLVRALWREGKIEEAVEAVRDMEQKGVIGTGSVYYELACCLCNNGRWCDAML 467
Query: 183 QMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241
++ ++ ++ N +PL +++TGLI A L+ G++ + IF MK+ C PN+ T N+M+K Y
Sbjct: 468 EVGRMKRLENCRPLEITFTGLIAASLNGGHVDDCMAIFQYMKDKCDPNIGTANMMLKVYG 527
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
+ +F EA +LF+E+ ++R K+ ++P+ YT++ ML+A A +W+ E VY+
Sbjct: 528 RNDMFSEAKELFEEI------VSR---KETHLVPNEYTYSFMLEASARSLQWEYFEHVYQ 578
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENK 361
M+ G + +H M+++ASRAGK LLE ++ + I P E C+
Sbjct: 579 TMVLSGYQMDQTKHASMLIEASRAGKWSLLEHAFDAVLEDGEIPHPLFFTELLCHATAKG 638
Query: 362 DYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPY 421
D+ AI+ L++ S + S W F+E+ QD LH+ S L +
Sbjct: 639 DFQRAIT-LINTVALASFQISEEEWTDLFEEHQDWLTQDN----LHKLSDHLIECDYVSE 693
Query: 422 PVLQNLISSCK 432
P + NL S K
Sbjct: 694 PTVSNLSKSLK 704
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/348 (20%), Positives = 160/348 (45%), Gaps = 31/348 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT+ + ++ G + E ++D M + ++ PD+V + ++
Sbjct: 138 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQR---------------PDLVTVSTLI 182
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
N + + A ++ ++ + G +P TYG V+ + G L + FRK+++ I
Sbjct: 183 NGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIK 242
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y +++++L ++G D+A+S +ME +GI Y L LC+ GK ++
Sbjct: 243 ASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKM 302
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ ++ P VV+++ LI + G + A ++N+M +P+ +T N ++ + +
Sbjct: 303 LREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCK 362
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
EA ++F M PDI T++ ++++ KR DD +++
Sbjct: 363 ENCLHEANQMFDLMVSKGCE------------PDIVTYSILINSYCKAKRVDDGMRLFRE 410
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
+ GL N + ++L ++GK+ + ++ + R PP+++
Sbjct: 411 ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM--VSRGVPPSVV 456
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 120/254 (47%), Gaps = 17/254 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT+ Y S+ + + E + D M S EPDIV Y+ ++
Sbjct: 348 PDTITYNSLIDGFCKENCLHEANQMFDLMVS---------------KGCEPDIVTYSILI 392
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N+ + K+ + + +++ +G P+ TY ++ GK N E F++ V +
Sbjct: 393 NSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVP 452
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y +L++ L G+ ++A+ E M++ + +Y + +C+A K ++A
Sbjct: 453 PSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSL 512
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ KP VV+Y +I G++ A +F +MK + C+P+ T NI+++A+L
Sbjct: 513 FCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLG 572
Query: 243 HGLFEEAMKLFQEM 256
+++L +EM
Sbjct: 573 GSGLISSVELIEEM 586
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 140/309 (45%), Gaps = 23/309 (7%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P + +N + +A R KQ++ + ++ G + Y + + + C K L++ F
Sbjct: 68 PTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHD--MYTMTIMINCYCRKKKLLFAF 125
Query: 115 F---RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
R + Y P+ + + LVN EG+ EAV+ V+ M L L
Sbjct: 126 SVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGL 185
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
C G+ EAL+ +D++ + +P V+Y ++ SGN A +F +M+ ++
Sbjct: 186 CLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASV 245
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
V +I++ + + G F++A+ LF EM + KG + D+ T+++++ +
Sbjct: 246 VQYSIVIDSLCKDGSFDDALSLFNEM-----------EMKG-IKADVVTYSSLIGGLCND 293
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLARA---DRITP 346
+WDD + + M+ + + +I + GK +E E+ E + R D IT
Sbjct: 294 GKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITY 353
Query: 347 PALIKERFC 355
+LI + FC
Sbjct: 354 NSLI-DGFC 361
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 112/272 (41%), Gaps = 55/272 (20%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE- 113
PD+V ++A+++ V+ + A + ++ +G P TY +++ K N ++E
Sbjct: 313 PDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID---GFCKENCLHEA 369
Query: 114 ---FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
F V K P+ + Y +L+N+ + + D+ + ++ +G++ + Y L
Sbjct: 370 NQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLG 429
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN------ 224
C +GK A ++ P VV+Y L+ D+G + A IF +M+
Sbjct: 430 FCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLG 489
Query: 225 -----------------------FCS-------PNLVTCNIMVKAYLEHGLFEEAMKLFQ 254
FCS P++VT N+M+ + G EA LF+
Sbjct: 490 IGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFR 549
Query: 255 EMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+M ED PD +T+N ++ A
Sbjct: 550 KMKEDG------------CTPDDFTYNILIRA 569
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 28/181 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHI---KELFDVIDSMRSLPKKKFKTGTL--------------- 46
P+T+ Y ++ + Q+G + KELF + S R +P G L
Sbjct: 418 PNTITYNTLVLGFCQSGKLNAAKELFQEMVS-RGVPPSVVTYGILLDGLCDNGELNKALE 476
Query: 47 ---ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
+ R+ I +YN +++ + + A+ + L +G KP TY +++ +
Sbjct: 477 IFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLC 536
Query: 104 ACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNT-LWREGKTDEAVSAVEDMERRGIVGSA 161
G + FRK+++ P+ Y +L+ L G +S+VE +E + G +
Sbjct: 537 KKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSG----LISSVELIEEMKVCGFS 592
Query: 162 A 162
A
Sbjct: 593 A 593
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 163/345 (47%), Gaps = 32/345 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV + ++ L + E +++D M + K P ++ N ++
Sbjct: 156 PDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHK---------------PTLITLNTLV 200
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
N + A ++ ++ + G +P+ TYG V+ VM G+ L E RK+++ I
Sbjct: 201 NGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIK 260
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+A+ Y ++++ L ++G D A + +ME +G Y L C+AG+ ++
Sbjct: 261 LDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKL 320
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLE 242
+ + K P VV+++ LI + + G ++ A + + M+ +PN +T N ++ + +
Sbjct: 321 LRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCK 380
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYK 301
EEA+++ M I++ D PDI TFN +++ C A + D LEL ++
Sbjct: 381 ENRLEEAIQMVDLM------ISKGCD------PDIMTFNILINGYCKANRIDDGLEL-FR 427
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
M G+ N + ++ ++GK+E+ + ++ + + R+ P
Sbjct: 428 EMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMV-SRRVRP 471
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 138/313 (44%), Gaps = 21/313 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P ++ +N + +A + KQ+E + +Q++ +G S T +++ C K + +
Sbjct: 86 PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y P+ + + L+N L E + EA+ V+ M G + L LC
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
GK +A++ +D++ + +P V+Y ++ SG A + +M+ + V
Sbjct: 206 NGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+I++ + G + A LF EM + KG DI T+NT++ R
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEM-----------EIKGFK-ADIITYNTLIGGFCNAGR 313
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITPPA 348
WDD + + M+ + N +I + GK+ +LL+ + + IT +
Sbjct: 314 WDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNS 373
Query: 349 LIKERFC--NRLE 359
LI + FC NRLE
Sbjct: 374 LI-DGFCKENRLE 385
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 108/245 (44%), Gaps = 33/245 (13%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLE------------RWDP-- 51
D V Y I L + G + F++ + M K FK + RWD
Sbjct: 262 DAVKYSIIIDGLCKDGSLDNAFNLFNEMEI---KGFKADIITYNTLIGGFCNAGRWDDGA 318
Query: 52 ---------RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVM 102
++ P++V ++ ++++ V+ + A +L+++ Q+G P+ TY +++
Sbjct: 319 KLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLID-- 376
Query: 103 LACGKYNLVYEFFRKVQ----KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
K N + E + V K P+ + + +L+N + + D+ + +M RG++
Sbjct: 377 -GFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVI 435
Query: 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218
+ Y L + C +GK E A ++ +P +VSY L+ D+G ++ A I
Sbjct: 436 ANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEI 495
Query: 219 FNQMK 223
F +++
Sbjct: 496 FGKIE 500
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/257 (19%), Positives = 119/257 (46%), Gaps = 23/257 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T+ Y S+ + ++E ++D M S +PDI+ +N ++
Sbjct: 366 PNTITYNSLIDGFCKENRLEEAIQMVDLMIS---------------KGCDPDIMTFNILI 410
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + + + + +++ +G + TY +++ GK + + F++ V +
Sbjct: 411 NGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVR 470
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++YK+L++ L G+ ++A+ +E+ + +Y + +C+A K ++A
Sbjct: 471 PDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDA--- 527
Query: 184 MDKICKVANKPLVV---SYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
D C + K + + +Y +I ++ A +F +M + +P+ +T NI+++A
Sbjct: 528 WDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRA 587
Query: 240 YLEHGLFEEAMKLFQEM 256
+L A +L +EM
Sbjct: 588 HLGDDDATTAAELIEEM 604
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 141/303 (46%), Gaps = 30/303 (9%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+ D ++ +I L ++ +++ +++ ++R R D V YN +
Sbjct: 158 FQDLASFNTILDVLCKSKRVEKAYELFRALRG----------------RFSVDTVTYNVI 201
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
LN K+ A VL+++ ++G P+ TTY +++ G+ +EFF +++K
Sbjct: 202 LNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDC 261
Query: 124 P-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+ + Y +V+ G+ A + ++M R G++ S A Y + + LC E A++
Sbjct: 262 EIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVV 321
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYL 241
+++ + +P V +Y LI+ +G + +M+N C PN T N+M++ Y
Sbjct: 322 MFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYS 381
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301
E E+A+ LF++M G +P++ T+N ++ KR +D+ + K
Sbjct: 382 ECSEVEKALGLFEKMGS------------GDCLPNLDTYNILISGMFVRKRSEDMVVAGK 429
Query: 302 RML 304
+L
Sbjct: 430 LLL 432
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 120/266 (45%), Gaps = 21/266 (7%)
Query: 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGK 141
+ + G ++ +++V+ + YE FR ++ + + + Y V++N +
Sbjct: 151 NMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKR 210
Query: 142 TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA---LMQMDKI-CKVANKPLVV 197
T +A+ +++M RGI + Y + + AG+ A ++M K C++ VV
Sbjct: 211 TPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEID----VV 266
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+YT ++ +G I+ A +F++M + P++ T N M++ + E A+ +F+EM
Sbjct: 267 TYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEM 326
Query: 257 AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316
+ R Y+ P++ T+N ++ + E + +RM + G N + +
Sbjct: 327 ------VRRGYE------PNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYN 374
Query: 317 RMILDASRAGKVELLEITWEHLARAD 342
MI S +VE +E + D
Sbjct: 375 MMIRYYSECSEVEKALGLFEKMGSGD 400
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/262 (17%), Positives = 103/262 (39%), Gaps = 28/262 (10%)
Query: 92 ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVE 150
A+++ L +++ + V+ +++ I P+ + ++ GK D+AV
Sbjct: 91 ASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFL 150
Query: 151 DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA-CLDS 209
+M G A + + LC + + E+A ++ + + V+Y ++ CL
Sbjct: 151 NMHEHGCFQDLASFNTILDVLCKSKRVEKA-YELFRALRGRFSVDTVTYNVILNGWCLIK 209
Query: 210 GNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN----- 264
+ + ++ +PNL T N M+K + G A + F EM + I+
Sbjct: 210 RTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYT 269
Query: 265 -------------------REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305
E ++G V+P + T+N M+ + ++ ++++ M+
Sbjct: 270 TVVHGFGVAGEIKRARNVFDEMIREG-VLPSVATYNAMIQVLCKKDNVENAVVMFEEMVR 328
Query: 306 HGLHFNAKRHLRMILDASRAGK 327
G N + +I AG+
Sbjct: 329 RGYEPNVTTYNVLIRGLFHAGE 350
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/337 (23%), Positives = 150/337 (44%), Gaps = 40/337 (11%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTL-- 46
MS PD V Y +I +L +G +K+ +V+D M L + + +
Sbjct: 198 MSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGH 257
Query: 47 ------ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
E D PD+V YN ++N + + + A L + G +P+ T+ +++
Sbjct: 258 AMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILR 317
Query: 101 VMLACGKY----NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
M + G++ L+ + RK + P+ + + +L+N L R+G A+ +E M + G
Sbjct: 318 SMCSTGRWMDAEKLLADMLRK---GFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHG 374
Query: 157 IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216
++ Y L C K + A+ ++++ P +V+Y ++ A G +++A
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAV 434
Query: 217 YIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
I NQ+ + CSP L+T N ++ + G +A+KL EM R D K P
Sbjct: 435 EILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEM--------RAKDLK----P 482
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312
D T+++++ + E + D+ + G+ NA
Sbjct: 483 DTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNA 519
Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 78/355 (21%), Positives = 150/355 (42%), Gaps = 36/355 (10%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
+ PD + Y + +AG I V+D M + PD+V YN
Sbjct: 167 GAVPDVITYNVMISGYCKAGEINNALSVLDRMS------------------VSPDVVTYN 208
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-K 120
+L + + + A VL ++ Q+ P TY +++E + +++ +
Sbjct: 209 TILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDR 268
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
P+ + Y VLVN + +EG+ DEA+ + DM G + + + R +CS G+ +A
Sbjct: 269 GCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDA 328
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
+ + + P VV++ LI G + A I +M ++ C PN ++ N ++
Sbjct: 329 EKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHG 388
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ + + A++ + M + PDI T+NTML A + + +D +
Sbjct: 389 FCKEKKMDRAIEYLERMVSRGCY------------PDIVTYNTMLTALCKDGKVEDAVEI 436
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGK----VELLEITWEHLARADRITPPALI 350
++ G + +I ++AGK ++LL+ + D IT +L+
Sbjct: 437 LNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLV 491
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 86/181 (47%), Gaps = 2/181 (1%)
Query: 46 LERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
LER R PDIV YN +L A + + E A +L QL +G P TY V++ +
Sbjct: 402 LERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAK 461
Query: 105 CGKYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK + +++ K P+ + Y LV L REGK DEA+ + ER GI +A
Sbjct: 462 AGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVT 521
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
+ + LC + + + A+ + + KP SYT LI+ G + A + N++
Sbjct: 522 FNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELC 581
Query: 224 N 224
N
Sbjct: 582 N 582
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 94/216 (43%), Gaps = 17/216 (7%)
Query: 102 MLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
M+ G+ ++F V +P+ + L+ R GKT +A +E +E G V
Sbjct: 112 MVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPD 171
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y + C AG+ AL +D++ + P VV+Y ++++ DSG ++ A + +
Sbjct: 172 VITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLD 228
Query: 221 QM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
+M + C P+++T I+++A AMKL EM + PD+ T
Sbjct: 229 RMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRG------------CTPDVVT 276
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
+N +++ E R D+ M G N H
Sbjct: 277 YNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITH 312
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 77/176 (43%), Gaps = 21/176 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLP---------------KKKFKTGTL-- 46
YPD V Y ++ L + G +++ ++++ + S K KTG
Sbjct: 411 YPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIK 470
Query: 47 ---ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
E L+PD + Y++++ R + + A + ++ G +P+A T+ +M +
Sbjct: 471 LLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLC 530
Query: 104 ACGKYNLVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ + +F + + PN +Y +L+ L EG EA+ + ++ +G++
Sbjct: 531 KSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLM 586
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 131/288 (45%), Gaps = 14/288 (4%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPD +N ++ + A ++ ++ + G +P TY ++ + G +L +
Sbjct: 155 EPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALD 214
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
RK+++ + + Y ++++L R+G D A+S ++ME +GI S Y L R LC
Sbjct: 215 LLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC 274
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
AGK + + + + P V+++ L+ + G +Q A ++ +M SPN++
Sbjct: 275 KAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNII 334
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ Y EA + M + PDI TF +++ K
Sbjct: 335 TYNTLMDGYCMQNRLSEANNMLDLMVRNKCS------------PDIVTFTSLIKGYCMVK 382
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
R DD V++ + GL NA + ++ ++GK++L E ++ +
Sbjct: 383 RVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMV 430
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 115/259 (44%), Gaps = 14/259 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P +V ++ +A R KQ+ +QL+ G + T +++ C K Y
Sbjct: 86 PSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 145
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
KV K Y P+ + L+ L+ EGK EAV V+ M G Y + +C
Sbjct: 146 LGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICR 205
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVT 232
+G AL + K+ + K V +Y+ +I + G I A +F +M+ ++VT
Sbjct: 206 SGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVT 265
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N +V+ + G + + L ++M ++RE ++P++ TFN +LD E +
Sbjct: 266 YNSLVRGLCKAGKWNDGALLLKDM------VSRE------IVPNVITFNVLLDVFVKEGK 313
Query: 293 WDDLELVYKRMLHHGLHFN 311
+ +YK M+ G+ N
Sbjct: 314 LQEANELYKEMITRGISPN 332
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 103/207 (49%), Gaps = 2/207 (0%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
+ PDIV + +++ K+ + V + + ++G +A TY ++++ GK L
Sbjct: 363 KCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLA 422
Query: 112 YEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
E F++ V +P+ + Y +L++ L GK ++A+ ED+++ + +Y +
Sbjct: 423 EELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG 482
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
+C GK E+A + KP V++YT +I G++ A + +M ++ +PN
Sbjct: 483 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 542
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEM 256
T N +++A+L G + KL +EM
Sbjct: 543 DCTYNTLIRAHLRDGDLTASAKLIEEM 569
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 122/279 (43%), Gaps = 15/279 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P+I+ YN +++ + + A +L + + P T+ +++ + +
Sbjct: 329 ISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGM 388
Query: 113 EFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ FR + K + NA+ Y +LV + GK A ++M G++ Y L L
Sbjct: 389 KVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGL 448
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C GK E+AL + + K +V YT +I+ G +++A +F + PN+
Sbjct: 449 CDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNV 508
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T +M+ + G EA L ++M ED N P+ T+NT++ A +
Sbjct: 509 MTYTVMISGLCKKGSLSEANILLRKMEEDGNA------------PNDCTYNTLIRAHLRD 556
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + M G +A ++M++D +G+++
Sbjct: 557 GDLTASAKLIEEMKSCGFSADAS-SIKMVIDMLLSGELD 594
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/274 (19%), Positives = 120/274 (43%), Gaps = 22/274 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM--RSLPKKKFKTGTL---------------- 46
PD V Y SI + ++G D++ M R++ F T+
Sbjct: 191 PDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISL 250
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E ++ +V YN+++ + +W +L+ + + P+ T+ ++++V +
Sbjct: 251 FKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVK 310
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK E +++ + + PN + Y L++ + + EA + ++ M R
Sbjct: 311 EGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVT 370
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
+ L + C + ++ + I K V+Y+ L+Q SG I+ A +F +M
Sbjct: 371 FTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMV 430
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+ P+++T I++ ++G E+A+++F+++
Sbjct: 431 SHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 464
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 127/265 (47%), Gaps = 17/265 (6%)
Query: 32 SMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPS 91
++R++PK LE++ +PD+ YNA++N + + + A VL +++ + P
Sbjct: 136 TLRNIPKAVRVMEILEKFG---QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPD 192
Query: 92 ATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVE 150
TY +++ + + GK +L + + + + P + Y +L+ EG DEA+ ++
Sbjct: 193 TVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMD 252
Query: 151 DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG 210
+M RG+ Y + R +C G + A + + +P V+SY L++A L+ G
Sbjct: 253 EMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQG 312
Query: 211 NIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269
+ + +M C PN+VT +I++ G EEAM L + M E
Sbjct: 313 KWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKE----------- 361
Query: 270 KGLVIPDIYTFNTMLDACAAEKRWD 294
KGL PD Y+++ ++ A E R D
Sbjct: 362 KGLT-PDAYSYDPLIAAFCREGRLD 385
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/370 (23%), Positives = 148/370 (40%), Gaps = 46/370 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD AY ++ + I + V+D MRS K F PD V YN ++
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRS---KDFS------------PDTVTYNIMI 200
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ R + + A VL QL +P+ TY +++E + G + + + + +
Sbjct: 201 GSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLK 260
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y ++ + +EG D A V ++E +G Y L R L + GK EE
Sbjct: 261 PDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKL 320
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
M K+ P VV+Y+ LI G I+ A + MK +P+ + + ++ A+
Sbjct: 321 MTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCR 380
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + A++ + M D +PDI +NT+L + D ++ +
Sbjct: 381 EGRLDVAIEFLETMISDG------------CLPDIVNYNTVLATLCKNGKADQALEIFGK 428
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKD 362
+ G N+ + M W + D+I +I E N ++ +
Sbjct: 429 LGEVGCSPNSSSYNTM------------FSALW---SSGDKIRALHMILEMMSNGIDPDE 473
Query: 363 --YGSAISCL 370
Y S ISCL
Sbjct: 474 ITYNSMISCL 483
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 141/331 (42%), Gaps = 51/331 (15%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD+ YN ++ + + AF +++ L+ +G +P +Y +++ +L GK+
Sbjct: 259 LKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGE 318
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL--AR 169
+ K+ + PN + Y +L+ TL R+GK +EA++ ++ M+ +G+ A Y L A
Sbjct: 319 KLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAF 378
Query: 170 C---------------------------------LCSAGKCEEALMQMDKICKVANKPLV 196
C LC GK ++AL K+ +V P
Sbjct: 379 CREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNS 438
Query: 197 VSYTGLIQACLDSGN-IQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
SY + A SG+ I+ I M N P+ +T N M+ G+ +EA +L +
Sbjct: 439 SSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVD 498
Query: 256 MAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315
M H P + T+N +L R +D V + M+ +G N +
Sbjct: 499 MRSCEFH------------PSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTY 546
Query: 316 LRMILDASRAG-KVELLEITWEHLARADRIT 345
+I AG + E +E+ + L R D I+
Sbjct: 547 TVLIEGIGFAGYRAEAMELAND-LVRIDAIS 576
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 106/255 (41%), Gaps = 17/255 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y + TL + G I+E +++ M+ + L PD Y+ ++
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMK---------------EKGLTPDAYSYDPLI 375
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
A R + + A L+ + G P Y V+ + GK + E F K+ +
Sbjct: 376 AAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCS 435
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN+ +Y + + LW G A+ + +M GI Y + CLC G +EA
Sbjct: 436 PNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFEL 495
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + P VV+Y ++ + I++A + M N C PN T ++++
Sbjct: 496 LVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGF 555
Query: 243 HGLFEEAMKLFQEMA 257
G EAM+L ++
Sbjct: 556 AGYRAEAMELANDLV 570
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 25/173 (14%)
Query: 5 PDTVAYRSIAVTL---GQAGHIKELFDVIDSMRSLPKKK---------FKTG-------- 44
PD V Y ++ TL G+A E+F + + P + +G
Sbjct: 401 PDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHM 460
Query: 45 TLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
LE ++PD + YN++++ R + AF +L ++ PS TY +V+ +
Sbjct: 461 ILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVL--LGF 518
Query: 105 CGKYNL---VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
C + + + V PN Y VL+ + G EA+ D+ R
Sbjct: 519 CKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVR 571
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/349 (22%), Positives = 157/349 (44%), Gaps = 47/349 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V+Y ++ ++ + G +KE R L + R EP + VYNA++
Sbjct: 214 PDAVSYTTVISSMCEVGLVKE-------GRELAE-------------RFEPVVSVYNALI 253
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + ++GAF +++++ ++G P+ +Y ++ V+ G+ L + F + +++
Sbjct: 254 NGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCH 313
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERR-GIVGSAALYYDLARCLCSAGKCEEALM 182
PN LV + G T +A+ M R G+ + Y L + CS G +A+
Sbjct: 314 PNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVS 373
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ ++ P + +Y LI G++ A YI+N+M + C PN+V MV+A
Sbjct: 374 VFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALC 433
Query: 242 EHGLFEEAMKLFQEMAED------------------------SNHINREYDKKGLVIPDI 277
H F+EA L + M+++ + + R+ +++ P+I
Sbjct: 434 RHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNI 493
Query: 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
T+N +LD A R ++ + + + G+ +++ + ++ + AG
Sbjct: 494 VTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAG 542
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 132/292 (45%), Gaps = 18/292 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
EP++ YN +L A + + +GA +L ++ +G P A +Y V+ M G LV
Sbjct: 177 FEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVG---LVK 233
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
E R++ + + P Y L+N L +E A + +M +GI + Y L LC
Sbjct: 234 E-GRELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLC 292
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNF-CSPNL 230
++G+ E A + ++ K P + + + L++ C G +A ++NQM + F PN+
Sbjct: 293 NSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNV 352
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
V N +V+ + HG +A+ +F M E P+I T+ ++++ A
Sbjct: 353 VAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCS------------PNIRTYGSLINGFAKR 400
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARAD 342
D ++ +ML G N + M+ R K + E E +++ +
Sbjct: 401 GSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKEN 452
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 105/238 (44%), Gaps = 22/238 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLER---- 48
P+ VAY ++ G+I + V M SL K G+L+
Sbjct: 350 PNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYI 409
Query: 49 WDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
W+ L P++VVY ++ A R +++ A +++ + ++ PS T+ ++ +
Sbjct: 410 WNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCD 469
Query: 105 CGKYNLVYEFFRKVQKSY--IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
G+ + + FR++++ + PN + Y L++ L + + +EA ++ RG+ S++
Sbjct: 470 AGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSS 529
Query: 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y L C+AG AL + K+ P ++ +I A G + AA + +
Sbjct: 530 TYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLD 587
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 101/241 (41%), Gaps = 17/241 (7%)
Query: 72 QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYK 130
Q + ++LQQ+K QG S + V+ V G E F ++++ P+ Y
Sbjct: 91 QVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYN 150
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
+++TL E + DM+R G + Y L + LC K + A + ++
Sbjct: 151 HVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNK 210
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAM 250
P VSYT +I + + G ++ + + + P + N ++ + ++ A
Sbjct: 211 GCCPDAVSYTTVISSMCEVGLVKEGRELAERFE----PVVSVYNALINGLCKEHDYKGAF 266
Query: 251 KLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHF 310
+L +EM E KG + P++ +++T+++ + + +ML G H
Sbjct: 267 ELMREMVE-----------KG-ISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHP 314
Query: 311 N 311
N
Sbjct: 315 N 315
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 161/346 (46%), Gaps = 34/346 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV + ++ L G + E +++D M + K P ++ NA++
Sbjct: 140 PDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHK---------------PTLITLNALV 184
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
N + A ++ ++ + G +P+ TYG V++VM G+ L E RK+++ I
Sbjct: 185 NGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIK 244
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+A+ Y ++++ L ++G D A + +ME +G +Y L R C AG+ ++
Sbjct: 245 LDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKL 304
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + K P VV+++ LI + G ++ A + +M + SP+ VT ++ + +
Sbjct: 305 LRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCK 364
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYK 301
++A NH+ KG P+I TFN +++ C A D LEL ++
Sbjct: 365 ENQLDKA-----------NHMLDLMVSKGCG-PNIRTFNILINGYCKANLIDDGLEL-FR 411
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKVELL-EITWEHLARADRITP 346
+M G+ + + +I GK+E+ E+ E ++R R+ P
Sbjct: 412 KMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSR--RVRP 455
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 116/249 (46%), Gaps = 16/249 (6%)
Query: 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKS 121
++N C R ++ AF + ++ + G +P T+ ++ + G+ + E R V+
Sbjct: 113 MINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMG 172
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+ P + LVN L GK +AV ++ M G + Y + + +C +G+ A+
Sbjct: 173 HKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAM 232
Query: 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKA 239
+ K+ + K V Y+ +I G++ NA +FN+M K F +++ +++
Sbjct: 233 ELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGF-KADIIIYTTLIRG 291
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+ G +++ KL ++M I R+ + PD+ F+ ++D E + + E +
Sbjct: 292 FCYAGRWDDGAKLLRDM------IKRK------ITPDVVAFSALIDCFVKEGKLREAEEL 339
Query: 300 YKRMLHHGL 308
+K M+ G+
Sbjct: 340 HKEMIQRGI 348
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 133/331 (40%), Gaps = 48/331 (14%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTL------------ERWDP-- 51
D V Y I L + G + F++ + M K FK + RWD
Sbjct: 246 DAVKYSIIIDGLCKDGSLDNAFNLFNEMEI---KGFKADIIIYTTLIRGFCYAGRWDDGA 302
Query: 52 ---------RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GL 97
++ PD+V ++A+++ V+ + A + +++ Q+G P TY G
Sbjct: 303 KLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGF 362
Query: 98 VMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
E L K N + + V K PN + +L+N + D+ + M RG+
Sbjct: 363 CKENQL--DKANHMLDLM--VSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGV 418
Query: 158 VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217
V Y L + C GK E A ++ +P +VSY L+ D+G + A
Sbjct: 419 VADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALE 478
Query: 218 IFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
IF ++ K+ ++ NI++ ++A LF + KG V PD
Sbjct: 479 IFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLP-----------LKG-VKPD 526
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
+ T+N M+ + + +L++++M G
Sbjct: 527 VKTYNIMIGGLCKKGSLSEADLLFRKMEEDG 557
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 118/257 (45%), Gaps = 23/257 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV Y S+ + + + ++D M S P+I +N ++
Sbjct: 350 PDTVTYTSLIDGFCKENQLDKANHMLDLMVS---------------KGCGPNIRTFNILI 394
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + + + +++ +G TY +++ GK + E F++ V +
Sbjct: 395 NGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVR 454
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ ++YK+L++ L G+ ++A+ E +E+ + +Y + +C+A K ++A
Sbjct: 455 PDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDA--- 511
Query: 184 MDKICKV---ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKA 239
D C + KP V +Y +I G++ A +F +M+ + SPN T NI+++A
Sbjct: 512 WDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRA 571
Query: 240 YLEHGLFEEAMKLFQEM 256
+L G ++ KL +E+
Sbjct: 572 HLGEGDATKSAKLIEEI 588
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/338 (20%), Positives = 145/338 (42%), Gaps = 34/338 (10%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
V Y L + + + + A + Q++ + +P + + V+ +Y+LV + ++
Sbjct: 38 VSYRERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQ 97
Query: 118 VQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
++ K N +++N R K A SA+ + + G + L LC G+
Sbjct: 98 MELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGR 157
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNI 235
EAL +D++ ++ +KP +++ L+ +G + +A + ++M + PN VT
Sbjct: 158 VSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGP 217
Query: 236 MVKAYLEHGLFEEAMKLFQEMAE------------------------DSNHINREYDKKG 271
++K + G AM+L ++M E ++ ++ E + KG
Sbjct: 218 VLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 277
Query: 272 LVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-EL 330
DI + T++ RWDD + + M+ + + +I + GK+ E
Sbjct: 278 FK-ADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREA 336
Query: 331 LEITWEHLARA---DRITPPALIKERFC--NRLENKDY 363
E+ E + R D +T +LI + FC N+L+ ++
Sbjct: 337 EELHKEMIQRGISPDTVTYTSLI-DGFCKENQLDKANH 373
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 76/169 (44%), Gaps = 1/169 (0%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D V YN ++ + E A + Q++ + +P +Y ++++ + G+ E F
Sbjct: 421 DTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIF 480
Query: 116 RKVQKSYIPNALA-YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
K++KS + + Y ++++ + K D+A + +G+ Y + LC
Sbjct: 481 EKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKK 540
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
G EA + K+ + + P +Y LI+A L G+ +A + ++K
Sbjct: 541 GSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIK 589
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/344 (22%), Positives = 158/344 (45%), Gaps = 30/344 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V S+ + I E ++D M F TG +P+ V +N ++
Sbjct: 149 PNIVTLSSLLNGYCHSKRISEAVALVDQM-------FVTG--------YQPNTVTFNTLI 193
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + A ++ ++ +G +P TYG+V+ + G +L + K+++ +
Sbjct: 194 HGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLE 253
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P L Y +++ L + D+A++ ++ME +GI + Y L CLC+ G+ +A
Sbjct: 254 PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 313
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + + P V +++ LI A + G + A ++++M K P++VT + ++ +
Sbjct: 314 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 373
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
H +EA ++F+ M S H PD+ T+NT++ KR ++ V++
Sbjct: 374 HDRLDEAKQMFEFMV--SKH----------CFPDVVTYNTLIKGFCKYKRVEEGMEVFRE 421
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
M GL N + +I +AG ++ + ++ + +D + P
Sbjct: 422 MSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMV-SDGVPP 464
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 103/207 (49%), Gaps = 8/207 (3%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V YN ++ + K+ E V +++ Q+G + TY ++++ + G ++ E
Sbjct: 394 PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 453
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F++ V PN + Y L++ L + GK ++A+ E ++R + + Y + +C
Sbjct: 454 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 513
Query: 174 AGKCEEALMQMDKICKVA---NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PN 229
AGK E+ D C ++ KP VV+Y +I G+ + A +F +MK + PN
Sbjct: 514 AGKVEDGW---DLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 570
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEM 256
N +++A L G E + +L +EM
Sbjct: 571 SGCYNTLIRARLRDGDREASAELIKEM 597
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/338 (22%), Positives = 145/338 (42%), Gaps = 41/338 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y S+ L G + ++ M +ER ++ PD+ ++A++
Sbjct: 289 PNVVTYSSLISCLCNYGRWSDASRLLSDM------------IER---KINPDVFTFSALI 333
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNLVYEFFRKVQ 119
+A V+ + A + ++ ++ PS TY G M L K ++EF V
Sbjct: 334 DAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQ--MFEFM--VS 389
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K P+ + Y L+ + + +E + +M +RG+VG+ Y L + L AG C+
Sbjct: 390 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 449
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A ++ P +++Y L+ +G ++ A +F + ++ P + T NIM++
Sbjct: 450 AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIE 509
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G E+ LF ++ KG V PD+ +NTM+ + ++ +
Sbjct: 510 GMCKAGKVEDGWDLFCNLS-----------LKG-VKPDVVAYNTMISGFCRKGSKEEADA 557
Query: 299 VYKRMLHHGLHFNAKRHLRMI----LDASRAGKVELLE 332
++K M G N+ + +I D R EL++
Sbjct: 558 LFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIK 595
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/298 (18%), Positives = 129/298 (43%), Gaps = 16/298 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P I+ ++ +L+A + +++ + +Q++ G + TY +++ + L
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y PN + L+N + EAV+ V+ M G + + L L
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
K EA+ +D++ +P +V+Y ++ G+ A + N+M + P ++
Sbjct: 199 HNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLI 258
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ ++ ++A+ LF+EM + KG + P++ T+++++ R
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEM-----------ETKG-IRPNVVTYSSLISCLCNYGR 306
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
W D + M+ ++ + +I + GK+ E ++ + + R P+++
Sbjct: 307 WSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK--RSIDPSIV 362
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/237 (19%), Positives = 88/237 (37%), Gaps = 57/237 (24%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKTGTL----- 46
+PD V Y ++ + ++E +V M L + F+ G
Sbjct: 393 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 452
Query: 47 ---ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
E + P+I+ YN +L+ + + E A V + L++ +P+ TY +++E M
Sbjct: 453 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 512
Query: 104 ACGK----------------------YN-LVYEFFRKVQK-------------SYIPNAL 127
GK YN ++ F RK K +PN+
Sbjct: 513 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 572
Query: 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
Y L+ R+G + + +++M G G A+ L + G+ +++ + M
Sbjct: 573 CYNTLIRARLRDGDREASAELIKEMRSCGFAGDAST-IGLVTNMLHDGRLDKSFLDM 628
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 105 bits (262), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 167/350 (47%), Gaps = 35/350 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+T+ + ++ L G + E +++D M + K PD++ N ++
Sbjct: 156 PNTITFSTLINGLCLEGRVSEALELVDRMVEMGHK---------------PDLITINTLV 200
Query: 65 NA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
N C+ K+ E A ++ ++ + G +P+A TYG V+ VM G+ L E RK+++ I
Sbjct: 201 NGLCLSGKEAE-AMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNI 259
Query: 124 P-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+A+ Y ++++ L + G D A + +ME +GI + Y L C+AG+ ++
Sbjct: 260 KLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAK 319
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ + K P VV+++ LI + + G ++ A + +M +P+ +T ++ +
Sbjct: 320 LLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFC 379
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVY 300
+ ++A ++ M +++ D P+I TFN +++ C A + D LEL +
Sbjct: 380 KENHLDKANQMVDLM------VSKGCD------PNIRTFNILINGYCKANRIDDGLEL-F 426
Query: 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
++M G+ + + +I GK+ + + ++ + R PP ++
Sbjct: 427 RKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEM--VSRKVPPNIV 474
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 138/307 (44%), Gaps = 19/307 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P ++ ++ + +A + KQ++ + +Q++ +G + T +++ C K L +
Sbjct: 86 PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 145
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y PN + + L+N L EG+ EA+ V+ M G L LC
Sbjct: 146 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 205
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
+GK EA++ +DK+ + +P V+Y ++ SG A + +M+ + V
Sbjct: 206 SGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+I++ +HG + A LF EM + KG + +I T+N ++ R
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEM-----------EMKG-ITTNIITYNILIGGFCNAGR 313
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARA---DRITPPA 348
WDD + + M+ ++ N +I + GK+ E E+ E + R D IT +
Sbjct: 314 WDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTS 373
Query: 349 LIKERFC 355
LI + FC
Sbjct: 374 LI-DGFC 379
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 111/244 (45%), Gaps = 15/244 (6%)
Query: 46 LERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
L + + R ++ D V Y+ +++ + + AF + +++ +G + TY +++
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCN 310
Query: 105 CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G+++ + R + K I PN + + VL+++ +EGK EA ++M RGI
Sbjct: 311 AGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTIT 370
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L C ++A +D + P + ++ LI + I + +F +M
Sbjct: 371 YTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMS 430
Query: 224 -NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ VT N +++ + E G A +LFQEM ++R+ V P+I T+
Sbjct: 431 LRGVVADTVTYNTLIQGFCELGKLNVAKELFQEM------VSRK------VPPNIVTYKI 478
Query: 283 MLDA 286
+LD
Sbjct: 479 LLDG 482
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/326 (19%), Positives = 132/326 (40%), Gaps = 63/326 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDT+ Y S+ + H+ + ++D M S +P+I +N ++
Sbjct: 366 PDTITYTSLIDGFCKENHLDKANQMVDLMVS---------------KGCDPNIRTFNILI 410
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N + + + + +++ +G TY +++ GK N+ E F++ V +
Sbjct: 411 NGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVP 470
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + YK+L++ L G++++A+ E +E+ + +Y + +C+A K ++A
Sbjct: 471 PNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDA--- 527
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
D C + K + P + T NIM+ +
Sbjct: 528 WDLFCSLPLKGV-------------------------------KPGVKTYNIMIGGLCKK 556
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G EA LF++M ED + PD +T+N ++ A + + + +
Sbjct: 557 GPLSEAELLFRKMEEDGHA------------PDGWTYNILIRAHLGDGDATKSVKLIEEL 604
Query: 304 LHHGLHFNAKRHLRMILDASRAGKVE 329
G +A ++M++D G+++
Sbjct: 605 KRCGFSVDAST-IKMVIDMLSDGRLK 629
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 113 EFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ FR + S +P + + L + + + + D ++ + ME +GI + + C
Sbjct: 74 DLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCF 133
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNL 230
C K A M KI K+ +P ++++ LI G + A + ++M P+L
Sbjct: 134 CRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDL 193
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
+T N +V G EAM L +M E
Sbjct: 194 ITINTLVNGLCLSGKEAEAMLLIDKMVE 221
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 144/332 (43%), Gaps = 40/332 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD VAY +I +L + + + FD FK +ER R P++V Y A++
Sbjct: 188 PDIVAYNAIIDSLCKTKRVNDAFDF-----------FKE--IERKGIR--PNVVTYTALV 232
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
N +W A +L + ++ P+ TY +++ + GK E F + V+ S
Sbjct: 233 NGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSID 292
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L+N L + DEA + M +G + Y L C A + E+ +
Sbjct: 293 PDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKL 352
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
++ + V+Y LIQ +G++ A F+QM F SP++ T NI++ +
Sbjct: 353 FREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCD 412
Query: 243 HGLFEEAMKLFQEMAEDSNHIN--------REYDKKGLV---------------IPDIYT 279
+G E+A+ +F++M + ++ R K G V PDI T
Sbjct: 413 NGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVT 472
Query: 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
+ TM+ + ++E +Y +M GL N
Sbjct: 473 YTTMMSGLCTKGLLHEVEALYTKMKQEGLMKN 504
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 133/301 (44%), Gaps = 25/301 (8%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPD V +++N RR + A ++ ++ + G KP Y +++ + + N ++
Sbjct: 152 EPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFD 211
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
FF+++++ I PN + Y LVN L + +A + DM ++ I + Y L
Sbjct: 212 FFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFV 271
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
GK EA +++ +++ P +V+Y+ LI I A +F+ M C ++V
Sbjct: 272 KNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVV 331
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAED---SNHINREYDKKGL---------------- 272
+ N ++ + + E+ MKLF+EM++ SN + +G
Sbjct: 332 SYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM 391
Query: 273 ----VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+ PDI+T+N +L + ++++ M + + + +I + GKV
Sbjct: 392 DFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKV 451
Query: 329 E 329
E
Sbjct: 452 E 452
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 140/312 (44%), Gaps = 49/312 (15%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC--------- 105
P IV +N +L+A V+ K+++ + ++++ G + T+ +V+ C
Sbjct: 83 PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142
Query: 106 -GKY-------------NLVYEFFRK-------------VQKSYIPNALAYKVLVNTLWR 138
GK +LV F R+ V+ Y P+ +AY ++++L +
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 202
Query: 139 EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS 198
+ ++A +++ER+GI + Y L LC++ + +A + + K P V++
Sbjct: 203 TKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVIT 262
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y+ L+ A + +G + A +F +M P++VT + ++ H +EA ++F M
Sbjct: 263 YSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMV 322
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
KG + D+ ++NT+++ KR +D +++ M GL N +
Sbjct: 323 S-----------KG-CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 370
Query: 318 MILDASRAGKVE 329
+I +AG V+
Sbjct: 371 LIQGFFQAGDVD 382
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
MS PD V Y S+ L I E + D M S G L D+V Y
Sbjct: 289 MSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVS-------KGCL--------ADVVSY 333
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N ++N + K+ E + +++ Q+G + TY +++ G + EFF ++
Sbjct: 334 NTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDF 393
Query: 121 SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
I P+ Y +L+ L G+ ++A+ EDM++R + Y + R +C GK EE
Sbjct: 394 FGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEE 453
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
A + KP +V+YT ++ G + ++ +MK
Sbjct: 454 AWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMK 497
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/250 (19%), Positives = 104/250 (41%), Gaps = 18/250 (7%)
Query: 107 KYNLVYEFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K N + F + KS P+ + + L++ + + K D +S + ME GI +
Sbjct: 65 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225
+ C C + AL + K+ K+ +P V+ L+ + +A + ++M
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184
Query: 226 C-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
P++V N ++ + + +A F+E+ ++KG + P++ T+ ++
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI-----------ERKG-IRPNVVTYTALV 232
Query: 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA--- 341
+ RW D + M+ + N + ++ + GKV + +E + R
Sbjct: 233 NGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSID 292
Query: 342 -DRITPPALI 350
D +T +LI
Sbjct: 293 PDIVTYSSLI 302
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 146/314 (46%), Gaps = 27/314 (8%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD V + +++ + + A +++++ +G +P TYG V+ + G+ +L
Sbjct: 167 QPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALN 226
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
K++K I + + Y ++++L + D+A++ +M+ +GI Y L CLC
Sbjct: 227 LLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLC 286
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
+ G+ +A + + + P VV++ LI A G + A +F++M + PN+V
Sbjct: 287 NYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIV 346
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAE------------------------DSNHINREY 267
T N ++ + H +EA ++F M D + R+
Sbjct: 347 TYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDM 406
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
++GLV + T+ T++ D+ ++V+K+M+ G+H N + ++ + GK
Sbjct: 407 SRRGLV-GNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGK 465
Query: 328 VELLEITWEHLARA 341
+E + +E+L ++
Sbjct: 466 LEKAMVVFEYLQKS 479
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/337 (21%), Positives = 142/337 (42%), Gaps = 39/337 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y S+ L G + ++ M LER ++ P++V +N+++
Sbjct: 273 PDVFTYSSLISCLCNYGRWSDASRLLSDM------------LER---KINPNVVTFNSLI 317
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKSYI 123
+A + + A + ++ Q+ P+ TY ++ + + + F V K +
Sbjct: 318 DAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCL 377
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L+N + K + + DM RRG+VG+ Y L A C+ A M
Sbjct: 378 PDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMV 437
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ P +++Y L+ +G ++ A +F + K+ P++ T NIM + +
Sbjct: 438 FKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCK 497
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G E+ LF ++ KG V PD+ +NTM+ + ++ ++ +
Sbjct: 498 AGKVEDGWDLFCSLS-----------LKG-VKPDVIAYNTMISGFCKKGLKEEAYTLFIK 545
Query: 303 MLHHG-----LHFNA--KRHLRMILDASRAGKVELLE 332
M G +N + HLR D +A EL++
Sbjct: 546 MKEDGPLPDSGTYNTLIRAHLR---DGDKAASAELIK 579
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/355 (22%), Positives = 146/355 (41%), Gaps = 73/355 (20%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRS-------LPKKKFKTGTLERWDP-- 51
M PDTV + ++ L Q E +++ M + G +R +P
Sbjct: 164 MGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDL 223
Query: 52 -----------RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100
++E D+V+Y+ V+++ + + + A + ++ +G +P TY ++
Sbjct: 224 ALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLIS 283
Query: 101 VMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+ G+++ + + I PN + + L++ +EGK EA ++M +R I
Sbjct: 284 CLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP 343
Query: 160 SAALYYDLARCLCSAGKCEEA-----LM--------------QMDKICK----------- 189
+ Y L C + +EA LM ++ CK
Sbjct: 344 NIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELF 403
Query: 190 --VANKPLV---VSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
++ + LV V+YT LI + + NA +F QM + PN++T N ++ ++
Sbjct: 404 RDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKN 463
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAA---EKRWD 294
G E+AM +F EY +K + PDIYT+N M + C A E WD
Sbjct: 464 GKLEKAMVVF------------EYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWD 506
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 120/258 (46%), Gaps = 14/258 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
++ YN ++N RR Q A +L ++ + G PS T ++ + +
Sbjct: 99 NLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALV 158
Query: 116 RK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ V+ Y P+ + + LV+ L++ K EAV+ VE M +G Y + LC
Sbjct: 159 DQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKR 218
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTC 233
G+ + AL ++K+ K + VV Y+ +I + ++ +A +F +M N P++ T
Sbjct: 219 GEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTY 278
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
+ ++ +G + +A +L +M E IN P++ TFN+++DA A E +
Sbjct: 279 SSLISCLCNYGRWSDASRLLSDMLE--RKIN----------PNVVTFNSLIDAFAKEGKL 326
Query: 294 DDLELVYKRMLHHGLHFN 311
+ E ++ M+ + N
Sbjct: 327 IEAEKLFDEMIQRSIDPN 344
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/221 (20%), Positives = 90/221 (40%), Gaps = 16/221 (7%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ +A K++ D ++ R + ++ T V Y ++
Sbjct: 378 PDVVTYNTLINGFCKA---KKVVDGMELFRDMSRRGLVGNT------------VTYTTLI 422
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + A V +Q+ G P+ TY +++ + GK F +QKS +
Sbjct: 423 HGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKME 482
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ Y ++ + + GK ++ + +G+ Y + C G EEA
Sbjct: 483 PDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTL 542
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
K+ + P +Y LI+A L G+ +A + +M++
Sbjct: 543 FIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRS 583
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y ++ + +AG +++ +D+ S+ SL K PD++ YN ++
Sbjct: 483 PDIYTYNIMSEGMCKAGKVEDGWDLFCSL-SLKGVK--------------PDVIAYNTMI 527
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ ++ E A+ + ++K+ G P + TY ++ L G E ++++
Sbjct: 528 SGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFA 587
Query: 125 NALAYKVLVNTLWREGKTDEA 145
+ LV + +G+ D+
Sbjct: 588 GDASTYGLVTDMLHDGRLDKG 608
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/325 (21%), Positives = 148/325 (45%), Gaps = 49/325 (15%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD +N +++ R + A ++ ++ +G +P TYG+V+ + G +L
Sbjct: 183 QPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALS 242
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+K+++ I P + Y +++ L ++A++ +M+ +GI + Y L RCLC
Sbjct: 243 LLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 302
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM---------- 222
+ G+ +A + + + P VV+++ LI A + G + A ++++M
Sbjct: 303 NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF 362
Query: 223 ------KNFCS--------------------PNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
FC PN+VT N ++K + + +E M+LF+EM
Sbjct: 363 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREM 422
Query: 257 AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316
++ +GLV + T+ T++ + D+ ++V+K+M+ G+ + +
Sbjct: 423 SQ-----------RGLV-GNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYS 470
Query: 317 RMILDASRAGKVELLEITWEHLARA 341
++ GKVE + +E+L R+
Sbjct: 471 ILLDGLCNNGKVETALVVFEYLQRS 495
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 148/313 (47%), Gaps = 24/313 (7%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPDIV N++LN + A ++ Q+ + G +P + T+ ++ + ++N E
Sbjct: 148 EPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLF---RHNRASE 204
Query: 114 FF----RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169
R V K P+ + Y ++VN L + G D A+S ++ ME+ I +Y +
Sbjct: 205 AVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIID 264
Query: 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSP 228
LC+ +AL ++ +P VV+Y LI+ + G +A+ + + M + +P
Sbjct: 265 ALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINP 324
Query: 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288
N+VT + ++ A+++ G EA KL+ EM I R D PDI+T++++++
Sbjct: 325 NVVTFSALIDAFVKEGKLVEAEKLYDEM------IKRSID------PDIFTYSSLINGFC 372
Query: 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLAR---ADRI 344
R D+ + +++ M+ N + +I +A +V E +E+ E R + +
Sbjct: 373 MHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTV 432
Query: 345 TPPALIKERFCNR 357
T LI F R
Sbjct: 433 TYTTLIHGFFQAR 445
Score = 88.6 bits (218), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 119/255 (46%), Gaps = 14/255 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEF 114
++ Y+ ++N RR Q A VL ++ + G +P T ++ + + V
Sbjct: 115 NLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLV 174
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ V+ Y P++ + L++ L+R + EAV+ V+ M +G Y + LC
Sbjct: 175 GQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKR 234
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTC 233
G + AL + K+ + +P VV Y +I A + N+ +A +F +M N PN+VT
Sbjct: 235 GDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY 294
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N +++ +G + +A +L +M E IN P++ TF+ ++DA E +
Sbjct: 295 NSLIRCLCNYGRWSDASRLLSDMIE--RKIN----------PNVVTFSALIDAFVKEGKL 342
Query: 294 DDLELVYKRMLHHGL 308
+ E +Y M+ +
Sbjct: 343 VEAEKLYDEMIKRSI 357
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/340 (21%), Positives = 148/340 (43%), Gaps = 47/340 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y S+ L G + ++ M +ER ++ P++V ++A++
Sbjct: 289 PNVVTYNSLIRCLCNYGRWSDASRLLSDM------------IER---KINPNVVTFSALI 333
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNLVYEFFRKVQ 119
+A V+ + A + ++ ++ P TY G M L K+ ++E +
Sbjct: 334 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH--MFELM--IS 389
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K PN + Y L+ + + DE + +M +RG+VG+ Y L A +C+
Sbjct: 390 KDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDN 449
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A + ++ P +++Y+ L+ ++G ++ A +F + ++ P++ T NIM++
Sbjct: 450 AQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIE 509
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G E+ LF ++ KG V P++ T+ TM+ + ++ +
Sbjct: 510 GMCKAGKVEDGWDLFCSLS-----------LKG-VKPNVVTYTTMMSGFCRKGLKEEADA 557
Query: 299 VYKRMLHHG-----LHFNA--KRHLRMILDASRAGKVELL 331
+++ M G +N + HLR D +A EL+
Sbjct: 558 LFREMKEEGPLPDSGTYNTLIRAHLR---DGDKAASAELI 594
Score = 39.3 bits (90), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + + +AG +++ +D+ S+ SL K P++V Y ++
Sbjct: 499 PDIYTYNIMIEGMCKAGKVEDGWDLFCSL-SLKGVK--------------PNVVTYTTMM 543
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ R+ E A + +++K++G P + TY ++ L G E R+++
Sbjct: 544 SGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFV 603
Query: 125 NALAYKVLVNTLWREGKTDEA 145
+ LV + +G+ D++
Sbjct: 604 GDASTIGLVTNMLHDGRLDKS 624
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 141/292 (48%), Gaps = 15/292 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD V + +++ + + A +++++ +G +P TYG V+ + G+ +L
Sbjct: 177 QPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALN 236
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
K++K I + + Y +++ L + D+A ME +GI Y L CLC
Sbjct: 237 LLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLC 296
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNL 230
+ G+ +A + + + P +V + LI A + G + A ++++M C P++
Sbjct: 297 NYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDV 356
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
V N ++K + ++ EE M++F+EM++ +GLV + T+ T++
Sbjct: 357 VAYNTLIKGFCKYKRVEEGMEVFREMSQ-----------RGLV-GNTVTYTTLIHGFFQA 404
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARAD 342
+ D+ ++V+K+M+ G+H + + ++ G VE + +E++ + D
Sbjct: 405 RDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRD 456
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 128/319 (40%), Gaps = 65/319 (20%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V Y +I L + H+ + FD+ + M + ++PD+ YN +++
Sbjct: 249 DVVIYNTIIDGLCKYKHMDDAFDLFNKMET---------------KGIKPDVFTYNPLIS 293
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY--I 123
+W A +L + ++ P + +++ + GK + + ++ KS
Sbjct: 294 CLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCF 353
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ +AY L+ + + +E + +M +RG+VG+ Y L A C+ A M
Sbjct: 354 PDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 413
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN------------------- 224
++ P +++Y L+ ++GN++ A +F M+
Sbjct: 414 FKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCK 473
Query: 225 ----------FCS-------PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
FCS PN+VT M+ + GL EEA LF EM ED
Sbjct: 474 AGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGP------ 527
Query: 268 DKKGLVIPDIYTFNTMLDA 286
+P+ T+NT++ A
Sbjct: 528 ------LPNSGTYNTLIRA 540
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 12/209 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA---CGKYNLV 111
PD+V YN ++ + K+ E V +++ Q+G + TY ++ C +V
Sbjct: 354 PDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 413
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++ + V P+ + Y +L++ L G + A+ E M++R + Y + L
Sbjct: 414 FK--QMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEAL 471
Query: 172 CSAGKCEEALMQMDKICKVA---NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCS 227
C AGK E+ D C ++ KP VV+YT ++ G + A +F +MK +
Sbjct: 472 CKAGKVEDG---WDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPL 528
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
PN T N +++A L G + +L +EM
Sbjct: 529 PNSGTYNTLIRARLRDGDEAASAELIKEM 557
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/303 (20%), Positives = 127/303 (41%), Gaps = 26/303 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P IV ++ +L+A + +++ + +Q++ G + TY + + + +L
Sbjct: 73 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAI 132
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y P+ + L+N + EAV+ V+ M G + L L
Sbjct: 133 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQ 192
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
K EA+ ++++ +P +V+Y +I G A + N+M K ++V
Sbjct: 193 HNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVI 252
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ ++ ++A LF +M + KG + PD++T+N ++ R
Sbjct: 253 YNTIIDGLCKYKHMDDAFDLFNKM-----------ETKG-IKPDVFTYNPLISCLCNYGR 300
Query: 293 WDDLELVYKRMLHHGLH-----FNAKRHLRMILDA-SRAGKVELLEITWEHLARADRITP 346
W D + ML ++ FNA ++DA + GK+ E ++ + ++ P
Sbjct: 301 WSDASRLLSDMLEKNINPDLVFFNA------LIDAFVKEGKLVEAEKLYDEMVKSKHCFP 354
Query: 347 PAL 349
+
Sbjct: 355 DVV 357
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 21/184 (11%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PD + Y + L G+++ V + M ++ D +L DIV Y +
Sbjct: 423 HPDIMTYNILLDGLCNNGNVETALVVFEYM-------------QKRDMKL--DIVTYTTM 467
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY- 122
+ A + + E + + L +G KP+ TY +M G F ++++
Sbjct: 468 IEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGP 527
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSA--VEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+PN+ Y L+ R+G DEA SA +++M G G A+ + L + G+ +++
Sbjct: 528 LPNSGTYNTLIRARLRDG--DEAASAELIKEMRSCGFAGDAST-FGLVTNMLHDGRLDKS 584
Query: 181 LMQM 184
+ M
Sbjct: 585 FLDM 588
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 134/308 (43%), Gaps = 31/308 (10%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ Y + L + G K+ F V D MR ER + +IV YN +
Sbjct: 265 FPNLYTYNCVMNQLCKDGRTKDAFQVFDEMR------------ERG---VSCNIVTYNTL 309
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSY 122
+ R + A V+ Q+K G P+ TY +++ GK R ++ +
Sbjct: 310 IGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGL 369
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ + Y +LV+ R+G T A V++ME RGI S Y L + E+A+
Sbjct: 370 SPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQ 429
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAY 240
+ ++ P V +Y+ LI G + A+ +F M KN C PN V N M+ Y
Sbjct: 430 LRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKN-CEPNEVIYNTMILGY 488
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
+ G A+KL +EM E + P++ ++ M++ E++ + E +
Sbjct: 489 CKEGSSYRALKLLKEMEEKE------------LAPNVASYRYMIEVLCKERKSKEAERLV 536
Query: 301 KRMLHHGL 308
++M+ G+
Sbjct: 537 EKMIDSGI 544
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/334 (21%), Positives = 149/334 (44%), Gaps = 42/334 (12%)
Query: 19 QAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFW 78
+AG I++ FD++ +E + P++V+Y +++ C ++ + E A
Sbjct: 175 EAGEIEKSFDLL---------------IELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKD 219
Query: 79 VLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLW 137
+ ++ + G + TY +++ + G +E + K+Q+ + PN Y ++N L
Sbjct: 220 LFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLC 279
Query: 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV 197
++G+T +A ++M RG+ + Y L LC K EA +D++ P ++
Sbjct: 280 KDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLI 339
Query: 198 SYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
+Y LI G + A + +K+ SP+LVT NI+V + G A K+ +EM
Sbjct: 340 TYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEM 399
Query: 257 AED------------------SNHINR------EYDKKGLVIPDIYTFNTMLDACAAEKR 292
E S+++ + ++ GLV PD++T++ ++ + +
Sbjct: 400 EERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLV-PDVHTYSVLIHGFCIKGQ 458
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
++ ++K M+ N + MIL + G
Sbjct: 459 MNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEG 492
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/289 (16%), Positives = 114/289 (39%), Gaps = 49/289 (16%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
+Y ++N+ V+ + + ++ G P + + ++ ++ +N + FF +
Sbjct: 96 LYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNEN 155
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
+ + + ++ +L+ + C AG+ E
Sbjct: 156 KSKVVLDVYSFGILI-----------------------------------KGCCEAGEIE 180
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
++ + ++ + P VV YT LI C G I+ A +F +M N T +++
Sbjct: 181 KSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLI 240
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
++G+ ++ +++++M ED V P++YT+N +++ + R D
Sbjct: 241 NGLFKNGVKKQGFEMYEKMQEDG------------VFPNLYTYNCVMNQLCKDGRTKDAF 288
Query: 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
V+ M G+ N + +I R K+ + + ++D I P
Sbjct: 289 QVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQM-KSDGINP 336
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/415 (21%), Positives = 177/415 (42%), Gaps = 76/415 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS------------LPKKKFKT------GTL 46
P+ + Y ++ + G I++ DV++ M S L K K+ G L
Sbjct: 391 PNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVL 450
Query: 47 ERW-DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLAC 105
+ + ++ PD+V YN++++ R ++ A+ +L + +G P TY +++ +
Sbjct: 451 NKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKS 510
Query: 106 GKYNLVYEFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
+ + F + QK PN + Y L++ + GK DEA +E M + + ++ +
Sbjct: 511 KRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTF 570
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-- 222
L LC+ GK +EA + +K+ K+ +P V + T LI L G+ +A F QM
Sbjct: 571 NALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLS 630
Query: 223 ----------------------------------KNFCSPNLVTCNIMVKAYLEHGLFEE 248
+N SP+L T + ++K Y + G
Sbjct: 631 SGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNF 690
Query: 249 AMKLFQEM----AEDSNH---------INREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
A + + M E S H + +Y K+ P++ + M++ +D
Sbjct: 691 AFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMME-------FDT 743
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
+ + ++M+ H + NAK + ++IL G + + E ++H+ R + I+P L+
Sbjct: 744 VVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELV 798
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 141/312 (45%), Gaps = 28/312 (8%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L+PD Y +++ +RK + AF V ++ +G + + Y ++ + + +
Sbjct: 249 LDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAM 308
Query: 113 EFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+ F K++ P Y VL+ +L + EA++ V++ME GI + Y L L
Sbjct: 309 DLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSL 368
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNL 230
CS K E+A + ++ + P V++Y LI G I++A + M++ SPN
Sbjct: 369 CSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNT 428
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAE------------------DSNHINREY----- 267
T N ++K Y + + +AM + +M E S + + Y
Sbjct: 429 RTYNELIKGYCKSNV-HKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSL 487
Query: 268 -DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
+ +GLV PD +T+ +M+D+ KR ++ ++ + G++ N + +I +AG
Sbjct: 488 MNDRGLV-PDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAG 546
Query: 327 KVELLEITWEHL 338
KV+ + E +
Sbjct: 547 KVDEAHLMLEKM 558
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 132/305 (43%), Gaps = 19/305 (6%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P+++ YNA++N +R E A V++ ++ + P+ TY +++ + +
Sbjct: 389 LMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMG 448
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ +++ +P+ + Y L++ R G D A + M RG+V Y + LC
Sbjct: 449 VLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLC 508
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNL 230
+ + EEA D + + P VV YT LI +G + A + +M KN C PN
Sbjct: 509 KSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKN-CLPNS 567
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
+T N ++ G +EA L ++M K GL P + T ++ +
Sbjct: 568 LTFNALIHGLCADGKLKEATLLEEKMV-----------KIGLQ-PTVSTDTILIHRLLKD 615
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV----ELLEITWEHLARADRITP 346
+D +++ML G +A + I R G++ +++ E+ D T
Sbjct: 616 GDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTY 675
Query: 347 PALIK 351
+LIK
Sbjct: 676 SSLIK 680
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 93/397 (23%), Positives = 155/397 (39%), Gaps = 46/397 (11%)
Query: 22 HIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQ 81
H+ LF S+ PK +PR + + Y ++L + + G + ++
Sbjct: 92 HVSSLF----SLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNG-YVGVVFKIR 146
Query: 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGK 141
L + S + G + V+ C K N F K Y Y L+N+L R G
Sbjct: 147 LLMIK----SCDSVGDALYVLDLCRKMNKDERFELK----YKLIIGCYNTLLNSLARFGL 198
Query: 142 TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201
DE +M + + Y + C G EEA + KI + P +YT
Sbjct: 199 VDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTS 258
Query: 202 LIQACLDSGNIQNAAYIFNQMKNFCSPNLVTC--NIMVKAYLEHGL-----FEEAMKLFQ 254
LI ++ +A +FN+M L C N + +L HGL +EAM LF
Sbjct: 259 LIMGYCQRKDLDSAFKVFNEMP------LKGCRRNEVAYTHLIHGLCVARRIDEAMDLFV 312
Query: 255 EMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKRMLHHGLHFNAK 313
+M +D P + T+ ++ + C +E++ + L LV K M G+ N
Sbjct: 313 KMKDDE------------CFPTVRTYTVLIKSLCGSERKSEALNLV-KEMEETGIKPNIH 359
Query: 314 RHLRMILDASRAGKV----ELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISC 369
+ +I K ELL E + IT ALI +C R +D +
Sbjct: 360 TYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALIN-GYCKRGMIEDAVDVVEL 418
Query: 370 LVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLL 406
+ S +S + + N +K + +++ H L ++L
Sbjct: 419 MESRKLSPNTR-TYNELIKGYCKSNVHKAMGVLNKML 454
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 110/284 (38%), Gaps = 52/284 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + T + G + + D++ MR + + PD+ Y++++
Sbjct: 635 PDAHTYTTFIQTYCREGRLLDAEDMMAKMR---------------ENGVSPDLFTYSSLI 679
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA-------------CGKYNL- 110
Q AF VL++++ G +PS T+ +++ +L C N+
Sbjct: 680 KGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMM 739
Query: 111 ----VYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER-RGIVGSAALY 164
V E K V+ S PNA +Y+ L+ + G A + M+R GI S ++
Sbjct: 740 EFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVF 799
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
L C C K EA +D + V + P + S LI G + +F
Sbjct: 800 NALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQ---- 855
Query: 225 FCSPNLVTCN---------IMVKAYLEHGLFEEAMKLFQEMAED 259
NL+ C I++ + GL E +LF M ++
Sbjct: 856 ----NLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKN 895
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/164 (18%), Positives = 71/164 (43%), Gaps = 15/164 (9%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S P+ +Y + + + + G+++ V D M+ + + P +V+N
Sbjct: 755 SVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQR--------------NEGISPSELVFN 800
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QK 120
A+L+ C + K+ A V+ + G P + +++ + G+ F+ + Q
Sbjct: 801 ALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQC 860
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
Y + LA+K++++ + ++G + ME+ G S+ Y
Sbjct: 861 GYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTY 904
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 102 bits (253), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 123/253 (48%), Gaps = 14/253 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP IV +++LN K+ A ++ Q+ + G +P T+ ++ + K +
Sbjct: 152 EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 211
Query: 114 FF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R VQ+ PN + Y V+VN L + G TD A++ + ME I ++ + LC
Sbjct: 212 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLC 271
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
++AL ++ +P VV+Y+ LI G +A+ + + M + +PNLV
Sbjct: 272 KYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 331
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ A+++ G F EA KL+ +M I R D PDI+T+N++++
Sbjct: 332 TFNALIDAFVKEGKFVEAEKLYDDM------IKRSID------PDIFTYNSLVNGFCMHD 379
Query: 292 RWDDLELVYKRML 304
R D + +++ M+
Sbjct: 380 RLDKAKQMFEFMV 392
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 128/280 (45%), Gaps = 14/280 (5%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
++E D+V++N ++++ + + + A + ++++ +G +P+ TY ++ + + G+++
Sbjct: 255 KIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDA 314
Query: 112 YEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
+ ++K PN + + L++ +EGK EA +DM +R I Y L
Sbjct: 315 SQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNG 374
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPN 229
C + ++A + + P VV+Y LI+ S +++ +F +M + +
Sbjct: 375 FCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 434
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
VT +++ G + A K+F++M D V PDI T++ +LD
Sbjct: 435 TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG------------VPPDIMTYSILLDGLCN 482
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + V+ M + + + MI +AGKV+
Sbjct: 483 NGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 522
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 129/295 (43%), Gaps = 32/295 (10%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLA 104
+ ++ P++V +NA+++A V+ ++ A + + ++ P TY G M L
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRL- 381
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
K ++EF V K P+ + Y L+ + + ++ +M RG+VG Y
Sbjct: 382 -DKAKQMFEFM--VSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 438
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-K 223
L + L G C+ A ++ P +++Y+ L+ ++G ++ A +F+ M K
Sbjct: 439 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 498
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
+ ++ M++ + G ++ LF ++ KG V P++ T+NTM
Sbjct: 499 SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLS-----------LKG-VKPNVVTYNTM 546
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNA-------KRHLRMILDASRAGKVELL 331
+ +++ + + K+M G N+ + HLR D +A EL+
Sbjct: 547 ISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLR---DGDKAASAELI 598
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 98/207 (47%), Gaps = 8/207 (3%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V YN ++ + K+ E + +++ +G TY +++ + G + +
Sbjct: 398 PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV 457
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F++ V P+ + Y +L++ L GK ++A+ + M++ I +Y + +C
Sbjct: 458 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 517
Query: 174 AGKCEEALMQMDKICKVA---NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
AGK ++ D C ++ KP VV+Y +I +Q A + +MK + PN
Sbjct: 518 AGKVDDG---WDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPN 574
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEM 256
T N +++A+L G + +L +EM
Sbjct: 575 SGTYNTLIRAHLRDGDKAASAELIREM 601
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/259 (19%), Positives = 116/259 (44%), Gaps = 14/259 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P IV +N +L+A + K+++ + +++++ TY +++ + +L
Sbjct: 83 PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 142
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y P+ + L+N + +AV+ V+ M G + L L
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
K EA+ +D++ + +P +V+Y ++ G+ A + N+M+ ++V
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 262
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ + ++ ++A+ LF+EM + KG + P++ T+++++ + R
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEM-----------ETKG-IRPNVVTYSSLISCLCSYGR 310
Query: 293 WDDLELVYKRMLHHGLHFN 311
W D + M+ ++ N
Sbjct: 311 WSDASQLLSDMIEKKINPN 329
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 92/242 (38%), Gaps = 48/242 (19%)
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F V+ +P+ + + L++ + + K D +S E M+R IV Y L C C
Sbjct: 73 FGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCR 132
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM----------- 222
+ AL + K+ K+ +P +V+ + L+ I +A + +QM
Sbjct: 133 RSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTIT 192
Query: 223 -------------------------KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
+ C PNLVT ++V + G + A+ L +M
Sbjct: 193 FTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKM- 251
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
+ + D+ FNT++D+ + DD ++K M G+ N +
Sbjct: 252 -----------EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 300
Query: 318 MI 319
+I
Sbjct: 301 LI 302
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 1/173 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L D V Y ++ + A V +Q+ G P TY ++++ + GK
Sbjct: 431 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 490
Query: 113 EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F +QKS I + Y ++ + + GK D+ + +G+ + Y + L
Sbjct: 491 EVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 550
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
CS +EA + K+ + P +Y LI+A L G+ +A + +M++
Sbjct: 551 CSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRS 603
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/181 (18%), Positives = 74/181 (40%), Gaps = 17/181 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y + L G +++ +V D M+ ++ DI +Y ++
Sbjct: 468 PDIMTYSILLDGLCNNGKLEKALEVFDYMQK---------------SEIKLDIYIYTTMI 512
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-I 123
+ + + + + L +G KP+ TY ++ + + Y +K+++ +
Sbjct: 513 EGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPL 572
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN+ Y L+ R+G + + +M VG A+ +A L G+ +++ +
Sbjct: 573 PNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANML-HDGRLDKSFLD 631
Query: 184 M 184
M
Sbjct: 632 M 632
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 101 bits (252), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/363 (20%), Positives = 158/363 (43%), Gaps = 42/363 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V S+ + I + ++D M + K PD + ++
Sbjct: 151 PDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYK---------------PDTFTFTTLI 195
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + A ++ Q+ Q+G +P TYG V+ + G +L +K++K I
Sbjct: 196 HGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE 255
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
+ + Y +++ L + D+A++ +M+ +GI Y L CLC+ G+ +A
Sbjct: 256 ADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 315
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + + P VV+++ LI A + G + A ++++M K P++ T + ++ +
Sbjct: 316 LSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM 375
Query: 243 HGLFEEAMKLFQEM------------------------AEDSNHINREYDKKGLVIPDIY 278
H +EA +F+ M E+ + RE ++GLV +
Sbjct: 376 HDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLV-GNTV 434
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338
T+ T++ + D+ ++V+K+M+ G+H N + ++ + GK+ + +E+L
Sbjct: 435 TYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYL 494
Query: 339 ARA 341
R+
Sbjct: 495 QRS 497
Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 133/278 (47%), Gaps = 14/278 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPDIV +++LN K+ A ++ Q+ + G KP T+ ++ + K +
Sbjct: 150 EPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVA 209
Query: 114 FFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ VQ+ P+ + Y +VN L + G D A+S ++ ME+ I +Y + LC
Sbjct: 210 LVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLC 269
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
++AL ++ +P V +Y+ LI + G +A+ + + M + +PN+V
Sbjct: 270 KYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVV 329
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T + ++ A+++ G EA KL+ EM I R D PDI+T++++++
Sbjct: 330 TFSALIDAFVKEGKLVEAEKLYDEM------IKRSID------PDIFTYSSLINGFCMHD 377
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
R D+ + +++ M+ N + +I +A +VE
Sbjct: 378 RLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVE 415
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/363 (23%), Positives = 146/363 (40%), Gaps = 66/363 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ L + G I D SL KK K ++E D+V+YN ++
Sbjct: 221 PDLVTYGTVVNGLCKRGDI-------DLALSLLKKMEK--------GKIEADVVIYNTII 265
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + K + A + ++ +G +P TY ++ + G+++ +++
Sbjct: 266 DGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKIN 325
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI-------------------------- 157
PN + + L++ +EGK EA ++M +R I
Sbjct: 326 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 385
Query: 158 ---------VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
+ Y L + C A + EE + ++ + V+YT LI
Sbjct: 386 FELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQ 445
Query: 209 SGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
+ + NA +F QM + PN++T NI++ ++G +AM +F EY
Sbjct: 446 ARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVF------------EY 493
Query: 268 DKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
++ + PDIYT+N M++ C A K D EL L G+ N + MI R G
Sbjct: 494 LQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSL-KGVSPNVIAYNTMISGFCRKG 552
Query: 327 KVE 329
E
Sbjct: 553 SKE 555
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/338 (21%), Positives = 144/338 (42%), Gaps = 41/338 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y S+ L G + ++ M +ER ++ P++V ++A++
Sbjct: 291 PDVFTYSSLISCLCNYGRWSDASRLLSDM------------IER---KINPNVVTFSALI 335
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNLVYEFFRKVQ 119
+A V+ + A + ++ ++ P TY G M L K+ ++E +
Sbjct: 336 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH--MFELM--IS 391
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K PN + Y L+ + + +E + +M +RG+VG+ Y L A C+
Sbjct: 392 KDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDN 451
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A M ++ V P +++Y L+ +G + A +F + ++ P++ T NIM++
Sbjct: 452 AQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIE 511
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G E+ +LF ++ KG V P++ +NTM+ + ++ +
Sbjct: 512 GMCKAGKVEDGWELFCNLS-----------LKG-VSPNVIAYNTMISGFCRKGSKEEADS 559
Query: 299 VYKRMLHHGLHFNAKRHLRMI----LDASRAGKVELLE 332
+ K+M G N+ + +I D R EL++
Sbjct: 560 LLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIK 597
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 136/313 (43%), Gaps = 21/313 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P IV +N +L+A + ++E + +Q++ G TY + + + +L
Sbjct: 81 PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y P+ + L+N + +AV+ V+ M G + L L
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
K EA+ +D++ + +P +V+Y ++ G+I A + +M K ++V
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 260
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ ++ ++A+ LF EM D KG + PD++T+++++ R
Sbjct: 261 YNTIIDGLCKYKHMDDALNLFTEM-----------DNKG-IRPDVFTYSSLISCLCNYGR 308
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLARA---DRITPPA 348
W D + M+ ++ N +I + GK VE ++ E + R+ D T +
Sbjct: 309 WSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSS 368
Query: 349 LIKERFC--NRLE 359
LI FC +RL+
Sbjct: 369 LING-FCMHDRLD 380
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 6/206 (2%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA---CGKYNLV 111
P++V Y+ ++ + K+ E + +++ Q+G + TY ++ C +V
Sbjct: 396 PNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 455
Query: 112 YEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++ + V PN L Y +L++ L + GK +A+ E ++R + Y + +
Sbjct: 456 FK--QMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGM 513
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNL 230
C AGK E+ + P V++Y +I G+ + A + +MK + PN
Sbjct: 514 CKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNS 573
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEM 256
T N +++A L G E + +L +EM
Sbjct: 574 GTYNTLIRARLRDGDREASAELIKEM 599
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/222 (18%), Positives = 97/222 (43%), Gaps = 16/222 (7%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ V Y ++ +A ++E ++ R + ++ T V Y +
Sbjct: 395 FPNVVTYSTLIKGFCKAKRVEEGMELF---REMSQRGLVGNT------------VTYTTL 439
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
++ + + + A V +Q+ G P+ TY ++++ + GK F +Q+S +
Sbjct: 440 IHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTM 499
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ Y +++ + + GK ++ ++ +G+ + Y + C G EEA
Sbjct: 500 EPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADS 559
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
+ K+ + P +Y LI+A L G+ + +A + +M++
Sbjct: 560 LLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRS 601
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/133 (19%), Positives = 57/133 (42%), Gaps = 2/133 (1%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+EPDI YN ++ + + E + + L +G P+ Y ++ G
Sbjct: 499 MEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEAD 558
Query: 113 EFFRKVQKSY-IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
+K+++ +PN+ Y L+ R+G + + +++M G G A+ L +
Sbjct: 559 SLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDAST-IGLVTNM 617
Query: 172 CSAGKCEEALMQM 184
G+ +++ + M
Sbjct: 618 LHDGRLDKSFLDM 630
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/313 (20%), Positives = 148/313 (47%), Gaps = 27/313 (8%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD + + +++ + A ++ ++ Q+G +P+ TYG+V+ + G +L +
Sbjct: 188 PDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNL 247
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K++ + I N + Y ++++L + D+A++ +ME +G+ + Y L CLC+
Sbjct: 248 LNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCN 307
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+ +A + + + P VV++ LI A + G + A ++++M K P++ T
Sbjct: 308 YERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT 367
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEM------------------------AEDSNHINREYD 268
+ ++ + H +EA +F+ M ++ + RE
Sbjct: 368 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMS 427
Query: 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
++GLV + T+ T++ + D+ ++V+K+M+ G+H N + ++ + GK+
Sbjct: 428 QRGLV-GNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKL 486
Query: 329 ELLEITWEHLARA 341
E + +E+L R+
Sbjct: 487 EKAMVVFEYLQRS 499
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 131/278 (47%), Gaps = 14/278 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP IV +++LN K+ A ++ Q+ + G +P T+ ++ + K +
Sbjct: 152 EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 211
Query: 114 FF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R VQ+ PN + Y V+VN L + G D A + + ME I + +Y + LC
Sbjct: 212 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLC 271
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
++AL ++ +P V++Y+ LI + +A+ + + M + +PN+V
Sbjct: 272 KYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVV 331
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ A+++ G EA KL+ EM I R D PDI+T++++++
Sbjct: 332 TFNALIDAFVKEGKLVEAEKLYDEM------IKRSID------PDIFTYSSLINGFCMHD 379
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
R D+ + +++ M+ N + +I +A +++
Sbjct: 380 RLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRID 417
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 119/262 (45%), Gaps = 22/262 (8%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACG 106
++ P++V +NA+++A V+ + A + ++ ++ P TY G M L
Sbjct: 325 KINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 384
Query: 107 KYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166
K+ ++E + K PN + Y L+N + + DE V +M +RG+VG+ Y
Sbjct: 385 KH--MFELM--ISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTT 440
Query: 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNF 225
L A C+ A M ++ P +++Y L+ +G ++ A +F + ++
Sbjct: 441 LIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 500
Query: 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
P + T NIM++ + G E+ LF ++ KG V PD+ +NTM+
Sbjct: 501 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLS-----------LKG-VKPDVIIYNTMIS 548
Query: 286 ACAAEKRWDDLELVYKRMLHHG 307
+ ++ + ++++M G
Sbjct: 549 GFCRKGLKEEADALFRKMREDG 570
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/306 (20%), Positives = 116/306 (37%), Gaps = 66/306 (21%)
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F V+ +P+ + L++ + + K D +S E M+R GI + Y L C C
Sbjct: 73 FGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCR 132
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM----------- 222
+ AL + K+ K+ +P +V+ + L+ I +A + +QM
Sbjct: 133 RSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTIT 192
Query: 223 -------------------------KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM- 256
+ C PNLVT ++V + G + A L +M
Sbjct: 193 FTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKME 252
Query: 257 -----------------------AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
+D+ ++ E + KG V P++ T+++++ +RW
Sbjct: 253 AAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKG-VRPNVITYSSLISCLCNYERW 311
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLARA---DRITPPAL 349
D + M+ ++ N +I + GK VE ++ E + R+ D T +L
Sbjct: 312 SDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 371
Query: 350 IKERFC 355
I FC
Sbjct: 372 ING-FC 376
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 144/331 (43%), Gaps = 26/331 (7%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M PD V Y +I +L + GH+ + D M E + R PD+V+Y
Sbjct: 171 MGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQM-------------ENYGIR--PDVVMY 215
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQ 119
+++N +W A +L+ + ++ KP T+ +++ + GK+ E + + ++
Sbjct: 216 TSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIR 275
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
S PN Y L+N EG DEA ME +G Y L C K ++
Sbjct: 276 MSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDD 335
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A+ ++ + ++YT LIQ G A +F+ M PN+ T N+++
Sbjct: 336 AMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLH 395
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+G ++A+ +F++M + RE D V P+I+T+N +L + + +
Sbjct: 396 CLCYNGKVKKALMIFEDMQK------REMDG---VAPNIWTYNVLLHGLCYNGKLEKALM 446
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
V++ M + + +I +AGKV+
Sbjct: 447 VFEDMRKREMDIGIITYTIIIQGMCKAGKVK 477
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 105/211 (49%), Gaps = 5/211 (2%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V Y +++N + K+ + A + ++ Q+G + TY +++ GK N+ E
Sbjct: 315 PDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEV 374
Query: 115 F-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA---LYYDLARC 170
F V + PN Y VL++ L GK +A+ EDM++R + G A Y L
Sbjct: 375 FSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHG 434
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPN 229
LC GK E+ALM + + K +++YT +IQ +G ++NA +F + PN
Sbjct: 435 LCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPN 494
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260
+VT M+ GL EA LF++M ED
Sbjct: 495 VVTYTTMISGLFREGLKHEAHVLFRKMKEDG 525
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/326 (21%), Positives = 135/326 (41%), Gaps = 29/326 (8%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ R P I+ + +LN + K+++ + L+ G T L+M +
Sbjct: 65 ESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPY 124
Query: 110 LVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
L F K+ K + P+ + + L+N + +EA+S V M GI +Y +
Sbjct: 125 LASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTII 184
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
LC G AL D++ +P VV YT L+ +SG ++A + M K
Sbjct: 185 DSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIK 244
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEM------------------------AEDSNHI 263
P+++T N ++ A+++ G F +A +L+ EM +++ +
Sbjct: 245 PDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQM 304
Query: 264 NREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDAS 323
+ KG PD+ + ++++ K+ DD ++ M GL N + +I
Sbjct: 305 FYLMETKG-CFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFG 363
Query: 324 RAGKVELLEITWEHLARADRITPPAL 349
+ GK + + + H+ R PP +
Sbjct: 364 QVGKPNVAQEVFSHM--VSRGVPPNI 387
Score = 40.4 bits (93), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 13/154 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y + L G +K+ + + M+ +R + P+I YN +L
Sbjct: 385 PNIRTYNVLLHCLCYNGKVKKALMIFEDMQ------------KREMDGVAPNIWTYNVLL 432
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEFFRKVQKSYI 123
+ + E A V + ++++ TY ++++ M GK N V F K
Sbjct: 433 HGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVK 492
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
PN + Y +++ L+REG EA M+ G+
Sbjct: 493 PNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGV 526
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 131/285 (45%), Gaps = 30/285 (10%)
Query: 5 PDTVAYRSIAVTLGQAG-HIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
P+ V Y ++ G+ G K++ D M+ + G ++PD + +N++
Sbjct: 301 PNLVTYNAVIDACGKGGMEFKQVAKFFDEMQ-------RNG--------VQPDRITFNSL 345
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSY 122
L C R WE A + ++ + + +Y +++ + G+ +L +E ++ K
Sbjct: 346 LAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRI 405
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+PN ++Y +++ + G+ DEA++ +M GI Y L G+ EEAL
Sbjct: 406 MPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALD 465
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYL 241
+ ++ V K VV+Y L+ G +F +MK PNL+T + ++ Y
Sbjct: 466 ILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYS 525
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
+ GL++EAM++F RE+ GL D+ ++ ++DA
Sbjct: 526 KGGLYKEAMEIF-----------REFKSAGLR-ADVVLYSALIDA 558
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 134/318 (42%), Gaps = 42/318 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V+Y ++ +AG E ++ MR L + D V YN +L
Sbjct: 407 PNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLG---------------IALDRVSYNTLL 451
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + E A +L+++ G K TY ++ GKY+ V + F ++++ ++
Sbjct: 452 SIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVL 511
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN L Y L++ + G EA+ + + G+ LY L LC G A+
Sbjct: 512 PNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSL 571
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAA-YIFNQMKNFCSPNLVTCNIMVKAYLE 242
+D++ K P VV+Y +I A S + +A Y F S L + L
Sbjct: 572 IDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSAL--------SALT 623
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGL-----------------VIPDIYTFNTMLD 285
++LF ++ +SN+ + ++G+ + P++ TF+ +L+
Sbjct: 624 ETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAILN 683
Query: 286 ACAAEKRWDDLELVYKRM 303
AC+ ++D ++ + +
Sbjct: 684 ACSRCNSFEDASMLLEEL 701
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 14/192 (7%)
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
C K YEF K ++ +++TL R GK A E G + +
Sbjct: 212 CDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAF 271
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG-NIQNAAYIFNQM- 222
L +G EEA+ + + + +P +V+Y +I AC G + A F++M
Sbjct: 272 SALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQ 331
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+N P+ +T N ++ GL+E A LF EM NR ++ D++++NT
Sbjct: 332 RNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMT------NRRIEQ------DVFSYNT 379
Query: 283 MLDACAAEKRWD 294
+LDA + D
Sbjct: 380 LLDAICKGGQMD 391
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 19/155 (12%)
Query: 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGL-FEEAMKLF 253
V +++ LI A SG + A +FN MK + PNLVT N ++ A + G+ F++ K F
Sbjct: 268 VYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFF 327
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK 313
EM + V PD TFN++L C+ W+ ++ M + + +
Sbjct: 328 DEMQRNG------------VQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVF 375
Query: 314 RHLRMILDASRAGKVELLEITWEHLAR--ADRITP 346
+ ++ + G+++L +E LA+ RI P
Sbjct: 376 SYNTLLDAICKGGQMDL---AFEILAQMPVKRIMP 407
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P++V ++A+LNAC R +E A +L++L+ K +GL+M G+ V+
Sbjct: 671 IKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLM------GQRENVW 724
Query: 113 ----EFFRKVQKSYIPNALA-YKVLVNTLWREGKTDEA-VSAVEDMERR 155
F KV + A A Y L + LW G+ A + A+E R+
Sbjct: 725 LQAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEGRSRQ 773
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/359 (23%), Positives = 149/359 (41%), Gaps = 53/359 (14%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D +Y S+ +G +E +V M + +P ++ YN +LN
Sbjct: 207 DVYSYTSLISAFANSGRYREAVNVFKKME---------------EDGCKPTLITYNVILN 251
Query: 66 ACVRRKQ-WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL------VYEFFRKV 118
+ W +++++K G P A TY ++ C + +L V+E +
Sbjct: 252 VFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLIT---CCKRGSLHQEAAQVFEEMKAA 308
Query: 119 QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
SY + + Y L++ + + EA+ + +M G S Y L G +
Sbjct: 309 GFSY--DKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLD 366
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMV 237
EA+ +++ + KP V +YT L+ +G +++A IF +M+N C PN+ T N +
Sbjct: 367 EAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFI 426
Query: 238 KAYLEHGLFEEAMKLFQE------------------------MAEDSNHINREYDKKGLV 273
K Y G F E MK+F E M + + + +E + G V
Sbjct: 427 KMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV 486
Query: 274 IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLE 332
P+ TFNT++ A + ++ VY+RML G+ + + ++ +R G E E
Sbjct: 487 -PERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSE 544
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/375 (23%), Positives = 155/375 (41%), Gaps = 75/375 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRS---LPKKK-FKT--------GTLER---- 48
PD V + ++ GQ G E+ V M+ +P+++ F T G+ E+
Sbjct: 452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTV 511
Query: 49 ----WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG-------- 96
D + PD+ YN VL A R WE + VL +++ KP+ TY
Sbjct: 512 YRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYAN 571
Query: 97 ------------------------LVMEVMLACGKYNLVYE----FFRKVQKSYIPNALA 128
L+ ++L C K +L+ E F ++ + P+
Sbjct: 572 GKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITT 631
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA---GKCEEALMQMD 185
+V+ R +A ++ M+ RG S A Y L + GK EE L +
Sbjct: 632 LNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILRE-- 689
Query: 186 KICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHG 244
I KP ++SY +I A + +++A+ IF++M+N P+++T N + +Y
Sbjct: 690 -ILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADS 748
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
+FEEA+ + + M + H R P+ T+N+++D R D+ +L + +
Sbjct: 749 MFEEAIGVVRYMIK---HGCR---------PNQNTYNSIVDGYCKLNRKDEAKLFVEDLR 796
Query: 305 HHGLHFNAKRHLRMI 319
+ H LR++
Sbjct: 797 NLDPHAPKGEDLRLL 811
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/353 (20%), Positives = 134/353 (37%), Gaps = 53/353 (15%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLP-----------------KKKFKTGTLE 47
PD Y ++ +AG ++ + + MR+ + KF T ++
Sbjct: 382 PDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKF-TEMMK 440
Query: 48 RWDP----RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML 103
+D L PDIV +N +L + V +++K+ G P T+ ++
Sbjct: 441 IFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYS 500
Query: 104 ACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162
CG + +R++ + + P+ Y ++ L R G +++ + +ME +
Sbjct: 501 RCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNEL 560
Query: 163 LYYDLARCLCSAGKCEEALMQ--MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y L + GK E LM +++ +P V L+ C + A F+
Sbjct: 561 TYCSLLHAYAN-GK-EIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFS 618
Query: 221 QMKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE--------------------- 258
++K SP++ T N MV Y + +A + M E
Sbjct: 619 ELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSA 678
Query: 259 ---DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
S I RE KG + PDI ++NT++ A R D ++ M + G+
Sbjct: 679 DFGKSEEILREILAKG-IKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGI 730
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/324 (21%), Positives = 132/324 (40%), Gaps = 28/324 (8%)
Query: 33 MRSLPKKKFKTGTL-----ERWDP-RLEPDIVVYN--AVLNACVRRKQWEGAF----WVL 80
+RSL + F +G L E ++P + +P+ A L K+++ A W +
Sbjct: 103 LRSLIEPNFDSGQLDSVLSELFEPFKDKPESTSSELLAFLKGLGFHKKFDLALRAFDWFM 162
Query: 81 QQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWRE 139
+Q Q ++ +++ ++ G+ + F +Q+ + + +Y L++
Sbjct: 163 KQKDYQSMLDNSVV-AIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANS 221
Query: 140 GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM-DKICKVANKPLVVS 198
G+ EAV+ + ME G + Y + G + + +K+ P +
Sbjct: 222 GRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYT 281
Query: 199 YTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257
Y LI C Q AA +F +MK S + VT N ++ Y + +EAMK+ EM
Sbjct: 282 YNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMV 341
Query: 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLR 317
+ P I T+N+++ A A + D+ + +M G + +
Sbjct: 342 LNG------------FSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTT 389
Query: 318 MILDASRAGKVELLEITWEHLARA 341
++ RAGKVE +E + A
Sbjct: 390 LLSGFERAGKVESAMSIFEEMRNA 413
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/337 (20%), Positives = 144/337 (42%), Gaps = 29/337 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V S+ + I + ++D M + K PD + ++
Sbjct: 151 PDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYK---------------PDTFTFTTLI 195
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + A ++ Q+ Q+G +P TYG V+ + G +L K++ + I
Sbjct: 196 HGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIK 255
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + + ++++L + + AV +ME +GI + Y L CLC+ G+ +A
Sbjct: 256 ANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRL 315
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ + + P VV++ LI A G + A + +M + P+ +T N+++ +
Sbjct: 316 LSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCM 375
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
H +EA ++F+ M +P+I T+NT+++ KR +D +++
Sbjct: 376 HNRLDEAKQMFKFMVSKD------------CLPNIQTYNTLINGFCKCKRVEDGVELFRE 423
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
M GL N + +I +AG + ++ ++ +
Sbjct: 424 MSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMV 460
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 130/289 (44%), Gaps = 21/289 (7%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ ++ P++V +NA+++A + + A + +++ Q+ P TY L++ + +
Sbjct: 321 EKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLD 380
Query: 110 LVYEFFR-KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
+ F+ V K +PN Y L+N + + ++ V +M +RG+VG+ Y +
Sbjct: 381 EAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTII 440
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCS 227
+ AG C+ A M ++ +++Y+ L+ G + A IF + K+
Sbjct: 441 QGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEME 500
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
N+ N M++ + G EA LF ++ + PD+ T+NTM+
Sbjct: 501 LNIFIYNTMIEGMCKAGKVGEAWDLFCSLS---------------IKPDVVTYNTMISGL 545
Query: 288 AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI----LDASRAGKVELLE 332
+++ + + ++++M G N+ + +I D RA EL++
Sbjct: 546 CSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIK 594
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/326 (19%), Positives = 140/326 (42%), Gaps = 29/326 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y ++ L + G I ++++ M + R++ ++V++N ++
Sbjct: 221 PDLVTYGTVVNGLCKRGDIDLALNLLNKMEA---------------ARIKANVVIFNTII 265
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
++ + + E A + +++ +G +P+ TY ++ + G+++ ++K
Sbjct: 266 DSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKIN 325
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + L++ ++EGK EA E+M +R I Y L C + +EA
Sbjct: 326 PNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQM 385
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ P + +Y LI +++ +F +M + N VT +++ + +
Sbjct: 386 FKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQ 445
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + A +F++M NR V DI T++ +L + + D +++K
Sbjct: 446 AGDCDSAQMVFKQMVS-----NR-------VPTDIMTYSILLHGLCSYGKLDTALVIFKY 493
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV 328
+ + N + MI +AGKV
Sbjct: 494 LQKSEMELNIFIYNTMIEGMCKAGKV 519
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 137/313 (43%), Gaps = 21/313 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P IV +N +L+A + ++E + +Q++ G TY + + + +L
Sbjct: 81 PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y P+ + L+N + +AV+ V+ M G + L L
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
K EA+ +D++ + +P +V+Y ++ G+I A + N+M+ N+V
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVI 260
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ + ++ E A+ LF EM + KG + P++ T+N++++ R
Sbjct: 261 FNTIIDSLCKYRHVEVAVDLFTEM-----------ETKG-IRPNVVTYNSLINCLCNYGR 308
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK-VELLEITWEHLARA---DRITPPA 348
W D + ML ++ N +I + GK VE ++ E + R+ D IT
Sbjct: 309 WSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNL 368
Query: 349 LIKERFC--NRLE 359
LI FC NRL+
Sbjct: 369 LING-FCMHNRLD 380
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/362 (21%), Positives = 145/362 (40%), Gaps = 74/362 (20%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V S+ Q + FD ID + + + F+ PD+V+YN ++
Sbjct: 137 PDVVTVSSLINGFCQGNRV---FDAIDLVSKMEEMGFR------------PDVVIYNTII 181
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+ + A + ++++ G + A TY ++ + G+++ R V + +
Sbjct: 182 DGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIV 241
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + +++ +EGK EA+ E+M RR + Y L LC G+ +EA
Sbjct: 242 PNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQM 301
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+D + P VV+Y LI S + +F +M + + +T N +++ Y +
Sbjct: 302 LDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQ 361
Query: 243 HG-------LF-------------------------EEAMKLFQEM-------------- 256
G +F E+A+ LF+ M
Sbjct: 362 AGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNI 421
Query: 257 ----------AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306
ED+ + R KGL PD+ ++ TM+ +++WD +L+Y++M
Sbjct: 422 VIHGMCKIGNVEDAWDLFRSLSCKGLK-PDVVSYTTMISGFCRKRQWDKSDLLYRKMQED 480
Query: 307 GL 308
GL
Sbjct: 481 GL 482
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 124/277 (44%), Gaps = 20/277 (7%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D+ YN V+N R ++ A V+ ++ + G +P T V ++ + N V++
Sbjct: 103 DLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVT---VSSLINGFCQGNRVFDAI 159
Query: 116 RKVQK----SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
V K + P+ + Y +++ + G ++AV + MER G+ A Y L L
Sbjct: 160 DLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGL 219
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNL 230
C +G+ +A M + P V+++T +I + G A ++ +M C P++
Sbjct: 220 CCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDV 279
Query: 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T N ++ HG +EA ++ M KG +PD+ T+NT+++
Sbjct: 280 FTYNSLINGLCMHGRVDEAKQMLDLMV-----------TKG-CLPDVVTYNTLINGFCKS 327
Query: 291 KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
KR D+ +++ M GL + + +I +AG+
Sbjct: 328 KRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGR 364
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 115/252 (45%), Gaps = 14/252 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPD+V ++++N + + A ++ ++++ G +P Y +++ G N E
Sbjct: 136 EPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVE 195
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F ++++ + +A+ Y LV L G+ +A + DM R IV + + +
Sbjct: 196 LFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFV 255
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
GK EA+ +++ + P V +Y LI G + A + + M C P++V
Sbjct: 256 KEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVV 315
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ + + +E KLF+EMA+ +GLV D T+NT++
Sbjct: 316 TYNTLINGFCKSKRVDEGTKLFREMAQ-----------RGLV-GDTITYNTIIQGYFQAG 363
Query: 292 RWDDLELVYKRM 303
R D + ++ RM
Sbjct: 364 RPDAAQEIFSRM 375
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 112/255 (43%), Gaps = 14/255 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P IV ++ VL+ + K ++ + ++ G +Y +V+ + C ++ +
Sbjct: 67 PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 126
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y P+ + L+N + + +A+ V ME G +Y + C
Sbjct: 127 VGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCK 186
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
G +A+ D++ + + V+Y L+ SG +AA + M PN++T
Sbjct: 187 IGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVIT 246
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
++ +++ G F EAMKL++EM + V PD++T+N++++ R
Sbjct: 247 FTAVIDVFVKEGKFSEAMKLYEEMT------------RRCVDPDVFTYNSLINGLCMHGR 294
Query: 293 WDDLELVYKRMLHHG 307
D+ + + M+ G
Sbjct: 295 VDEAKQMLDLMVTKG 309
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 147/333 (44%), Gaps = 35/333 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTV Y + L +A +E D ++ MR+ T L P++V Y+ +L
Sbjct: 300 PDTVFYTKLISGLCEASLFEEAMDFLNRMRA-------TSCL--------PNVVTYSTLL 344
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
C+ +KQ VL + +G PS + ++ G ++ Y+ +K+ K ++
Sbjct: 345 CGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHM 404
Query: 124 PNALAYKVLVNTLWREGKT------DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
P + Y +L+ ++ + + D A A +M G+V + RCLCSAGK
Sbjct: 405 PGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKY 464
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIM 236
E+A + ++ P +Y+ ++ ++ ++ A +F +MK ++ T IM
Sbjct: 465 EKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIM 524
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
V ++ + GL E+A K F EM E P++ T+ ++ A K+
Sbjct: 525 VDSFCKAGLIEQARKWFNEMREVG------------CTPNVVTYTALIHAYLKAKKVSYA 572
Query: 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+++ ML G N + +I +AG+VE
Sbjct: 573 NELFETMLSEGCLPNIVTYSALIDGHCKAGQVE 605
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/318 (21%), Positives = 131/318 (41%), Gaps = 34/318 (10%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD Y+ VLN + E AF + +++K+ G TY ++++ G ++
Sbjct: 481 PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 540
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F ++++ PN + Y L++ + K A E M G + + Y L C
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 600
Query: 174 AGKCEEALMQMDKICKV----------------ANKPLVVSYTGLIQACLDSGNIQNAAY 217
AG+ E+A +++C + +P VV+Y L+ S ++ A
Sbjct: 601 AGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARK 660
Query: 218 IFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276
+ + M C PN + + ++ + G +EA ++ EM+E
Sbjct: 661 LLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHG------------FPAT 708
Query: 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE----LLE 332
+YT+++++D KR D V +ML + N + MI + GK + L++
Sbjct: 709 LYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQ 768
Query: 333 ITWEHLARADRITPPALI 350
+ E + + +T A+I
Sbjct: 769 MMEEKGCQPNVVTYTAMI 786
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 121/264 (45%), Gaps = 17/264 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM---RSLPKKKFKTGTLERWDPRLE-PDIVVY 60
P+ V Y ++ +AG +++ + + M + +P +++D E P++V Y
Sbjct: 586 PNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDM---YFKQYDDNSERPNVVTY 642
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
A+L+ + + E A +L + +G +P+ Y +++ + GK + E ++ +
Sbjct: 643 GALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSE 702
Query: 121 SYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
P L Y L++ ++ + D A + M + +Y ++ LC GK +E
Sbjct: 703 HGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDE 762
Query: 180 A--LMQM--DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCN 234
A LMQM +K C+ P VV+YT +I G I+ + +M +PN VT
Sbjct: 763 AYKLMQMMEEKGCQ----PNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYR 818
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAE 258
+++ ++G + A L +EM +
Sbjct: 819 VLIDHCCKNGALDVAHNLLEEMKQ 842
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/364 (19%), Positives = 145/364 (39%), Gaps = 50/364 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR-----------SLPKKKF-KTGTLE---RW 49
PDT Y + L A ++ F + + M+ ++ F K G +E +W
Sbjct: 481 PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 540
Query: 50 DPRLE-----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ P++V Y A+++A ++ K+ A + + + +G P+ TY +++
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 600
Query: 105 CGKYNLVYEFFRKV-----------------QKSYIPNALAYKVLVNTLWREGKTDEAVS 147
G+ + F ++ S PN + Y L++ + + +EA
Sbjct: 601 AGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARK 660
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
++ M G + +Y L LC GK +EA ++ + + +Y+ LI
Sbjct: 661 LLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYF 720
Query: 208 DSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
A+ + ++M +N C+PN+V M+ + G +EA KL Q M E
Sbjct: 721 KVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQ---- 776
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326
P++ T+ M+D + + + +RM G+ N + +I + G
Sbjct: 777 --------PNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNG 828
Query: 327 KVEL 330
+++
Sbjct: 829 ALDV 832
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 111/270 (41%), Gaps = 27/270 (10%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWV----LQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ D V+ LN VR+ G+F + L +LK +PS +TY +++ L + +
Sbjct: 193 DDDKEVFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLD 252
Query: 110 LVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168
R++ + + + + +L + GK EA++ VE V Y L
Sbjct: 253 SASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVE---TENFVPDTVFYTKLI 309
Query: 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCS 227
LC A EEA+ ++++ + P VV+Y+ L+ CL+ + + N M C
Sbjct: 310 SGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCY 369
Query: 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287
P+ N +V AY G A KL ++M + + +P +N ++ +
Sbjct: 370 PSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGH------------MPGYVVYNILIGSI 417
Query: 288 AAEKR------WDDLELVYKRMLHHGLHFN 311
+K D E Y ML G+ N
Sbjct: 418 CGDKDSLNCDLLDLAEKAYSEMLAAGVVLN 447
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/263 (16%), Positives = 100/263 (38%), Gaps = 51/263 (19%)
Query: 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
S P+ V Y + L + G E + ++ M + +P++V Y
Sbjct: 739 SCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMME---------------EKGCQPNVVTYT 783
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121
A+++ + E +L+++ +G P+ TY ++++ G ++ + +++++
Sbjct: 784 AMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQT 843
Query: 122 YIPNALA----------------------------------YKVLVNTLWREGKTDEAVS 147
+ P A Y++L++ L + + + A+
Sbjct: 844 HWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALR 903
Query: 148 AVEDME--RRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+E++ +V ++ Y L LC A K E A ++ K P + S+ LI+
Sbjct: 904 LLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKG 963
Query: 206 CLDSGNIQNAAYIFNQMKNFCSP 228
+ I A + + + + P
Sbjct: 964 LFRNSKISEALLLLDFISHMVCP 986
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 120/253 (47%), Gaps = 14/253 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP IV +++LN K+ A ++ Q+ + G +P T+ ++ + K +
Sbjct: 77 EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 136
Query: 114 FF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R VQ+ PN + Y V+VN L + G D A + + ME I ++ + LC
Sbjct: 137 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLC 196
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
++AL ++ +P VV+Y+ LI G +A+ + + M + +PNLV
Sbjct: 197 KYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 256
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ A+++ G F EA KL +M I R D PDI+T+N++++
Sbjct: 257 TFNALIDAFVKEGKFVEAEKLHDDM------IKRSID------PDIFTYNSLINGFCMHD 304
Query: 292 RWDDLELVYKRML 304
R D + +++ M+
Sbjct: 305 RLDKAKQMFEFMV 317
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/327 (19%), Positives = 143/327 (43%), Gaps = 29/327 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y + L + G I F++++ M + ++E D+V++N ++
Sbjct: 148 PNLVTYGVVVNGLCKRGDIDLAFNLLNKMEA---------------AKIEADVVIFNTII 192
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
++ + + + A + ++++ +G +P+ TY ++ + + G+++ + ++K
Sbjct: 193 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN 252
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + + L++ +EGK EA +DM +R I Y L C + ++A
Sbjct: 253 PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 312
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
+ + P + +Y LI+ S +++ +F +M + + VT +++
Sbjct: 313 FEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 372
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G + A K+F++M D V PDI T++ +LD + + V+
Sbjct: 373 DGDCDNAQKVFKQMVSDG------------VPPDIMTYSILLDGLCNNGKLEKALEVFDY 420
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
M + + + MI +AGKV+
Sbjct: 421 MQKSEIKLDIYIYTTMIEGMCKAGKVD 447
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 112/278 (40%), Gaps = 57/278 (20%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLA 104
+ ++ P++V +NA+++A V+ ++ A + + ++ P TY G M L
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRL- 306
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
K ++EF V K P+ Y L+ + + ++ +M RG+VG Y
Sbjct: 307 -DKAKQMFEFM--VSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 363
Query: 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
L + L G C+ A ++ P +++Y+ L+ ++G ++ A +F+ M+
Sbjct: 364 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 423
Query: 225 -----------------------------FCS-------PNLVTCNIMVKAYLEHGLFEE 248
FCS PN+VT N M+ L +E
Sbjct: 424 SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQE 483
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
A L ++M ED +PD T+NT++ A
Sbjct: 484 AYALLKKMKEDGP------------LPDSGTYNTLIRA 509
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/259 (19%), Positives = 118/259 (45%), Gaps = 14/259 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P I +N +L+A + K+++ + +++++ G + TY +++ + +L
Sbjct: 8 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y P+ + L+N + +AV+ V+ M G + L L
Sbjct: 68 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
K EA+ +D++ + +P +V+Y ++ G+I A + N+M+ ++V
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ + ++ ++A+ LF+EM + KG + P++ T+++++ + R
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEM-----------ETKG-IRPNVVTYSSLISCLCSYGR 235
Query: 293 WDDLELVYKRMLHHGLHFN 311
W D + M+ ++ N
Sbjct: 236 WSDASQLLSDMIEKKINPN 254
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 9/210 (4%)
Query: 24 KELFDVIDSMRSLPK-----KKFKTGT---LERWDPRLEPDIVVYNAVLNACVRRKQWEG 75
K+ F +D+ +L K K+ + GT E L D V Y ++ +
Sbjct: 319 KDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDN 378
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP-NALAYKVLVN 134
A V +Q+ G P TY ++++ + GK E F +QKS I + Y ++
Sbjct: 379 AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIE 438
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194
+ + GK D+ + +G+ + Y + LCS +EA + K+ + P
Sbjct: 439 GMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLP 498
Query: 195 LVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
+Y LI+A L G+ +A + +M++
Sbjct: 499 DSGTYNTLIRAHLRDGDKAASAELIREMRS 528
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 90/238 (37%), Gaps = 48/238 (20%)
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
V+ +P+ + L++ + + K D +S E M+R GI + Y L C C +
Sbjct: 2 VKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQI 61
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--------------- 222
AL + K+ K+ +P +V+ + L+ I +A + +QM
Sbjct: 62 SLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTL 121
Query: 223 ---------------------KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSN 261
+ C PNLVT ++V + G + A L +M
Sbjct: 122 IHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM----- 176
Query: 262 HINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
+ + D+ FNT++D+ + DD ++K M G+ N + +I
Sbjct: 177 -------EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLI 227
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/161 (19%), Positives = 71/161 (44%), Gaps = 20/161 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLER-WD- 50
PD + Y + L G +++ +V D M+ ++ + K G ++ WD
Sbjct: 393 PDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 452
Query: 51 ------PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
++P++V YN +++ ++ + A+ +L+++K+ G P + TY ++ L
Sbjct: 453 FCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLR 512
Query: 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEA 145
G E R+++ + LV + +G+ D++
Sbjct: 513 DGDKAASAELIREMRSCRFVGDASTIGLVANMLHDGRLDKS 553
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/359 (20%), Positives = 156/359 (43%), Gaps = 44/359 (12%)
Query: 12 SIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRK 71
S+ ++ HI + F +RS +F P +P + +YN +L +C++ +
Sbjct: 80 SVVSIFAKSNHIDKAFPQFQLVRS----RF---------PENKPSVYLYNLLLESCIKER 126
Query: 72 QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYIPNALAYK 130
+ E W+ + + G P T+ L++ + + E F ++ +K PN +
Sbjct: 127 RVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFG 186
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190
+LV + G TD+ + + ME G++ + +Y + C G+ +++ ++K+ +
Sbjct: 187 ILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREE 246
Query: 191 ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-----NFCSPNLVTCNIMVKAYLEHGL 245
P +V++ I A G + +A+ IF+ M+ PN +T N+M+K + + GL
Sbjct: 247 GLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGL 306
Query: 246 FEEAMKLFQEMAEDSN------------------------HINREYDKKGLVIPDIYTFN 281
E+A LF+ + E+ + + ++ KG + P IY++N
Sbjct: 307 LEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKG-IGPSIYSYN 365
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
++D D + + M +G+ +A + ++ GKV+ + + + R
Sbjct: 366 ILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMR 424
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/339 (20%), Positives = 144/339 (42%), Gaps = 28/339 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + S L + G V+D+ R F L+ + P+ + YN +L
Sbjct: 250 PDIVTFNSRISALCKEGK------VLDASRI-----FSDMELDEYLGLPRPNSITYNLML 298
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
+ E A + + +++ S +Y + ++ ++ GK+ +++ K
Sbjct: 299 KGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIG 358
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ +Y +L++ L + G +A + V M+R G+ A Y L CS GK + A
Sbjct: 359 PSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSL 418
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+ ++ + P + L+ + G I A + +M + + VTCNI+V
Sbjct: 419 LQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCG 478
Query: 243 HGLFEEAMKLFQEM----AEDSNHINREYDKKGLV---------IPDIYTFNTMLDACAA 289
G ++A+++ + M + ++ Y GLV +PD+ T++T+L+
Sbjct: 479 SGELDKAIEIVKGMRVHGSAALGNLGNSY--IGLVDDSLIENNCLPDLITYSTLLNGLCK 536
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
R+ + + ++ M+ L ++ + I + GK+
Sbjct: 537 AGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKI 575
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 13/221 (5%)
Query: 90 PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSA 148
P TY ++ + G++ F ++ + P+++AY + ++ ++GK A
Sbjct: 522 PDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRV 581
Query: 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208
++DME++G S Y L L + E MD++ + P + +Y IQ +
Sbjct: 582 LKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCE 641
Query: 209 SGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266
+++A + ++M KN +PN+ + +++A+ + F+ A ++F+
Sbjct: 642 GEKVEDATNLLDEMMQKNI-APNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQ---- 696
Query: 267 YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
K+GL FN +L A K + LE V R G
Sbjct: 697 --KEGLY---SLMFNELLAAGQLLKATELLEAVLDRGFELG 732
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/258 (19%), Positives = 104/258 (40%), Gaps = 9/258 (3%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMR---SLPKKKFKTGTLERWDPRL-----EPDI 57
DTV I L +G + + +++ MR S + D L PD+
Sbjct: 465 DTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDL 524
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
+ Y+ +LN + ++ A + ++ + +P + Y + + GK + + +
Sbjct: 525 ITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKD 584
Query: 118 VQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
++K +L Y L+ L + + E +++M+ +GI + Y + LC K
Sbjct: 585 MEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEK 644
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIM 236
E+A +D++ + P V S+ LI+A + A +F + C ++M
Sbjct: 645 VEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQKEGLYSLM 704
Query: 237 VKAYLEHGLFEEAMKLFQ 254
L G +A +L +
Sbjct: 705 FNELLAAGQLLKATELLE 722
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 15/172 (8%)
Query: 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACV 68
Y S+ + LG I E+ ++D M+ + + P+I YN +
Sbjct: 596 TYNSLILGLGIKNQIFEIHGLMDEMK---------------EKGISPNICTYNTAIQYLC 640
Query: 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALA 128
++ E A +L ++ Q+ P+ ++ ++E +++ E F
Sbjct: 641 EGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQKEGL 700
Query: 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
Y ++ N L G+ +A +E + RG LY DL LC + E A
Sbjct: 701 YSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVA 752
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 145/332 (43%), Gaps = 40/332 (12%)
Query: 6 DTVAYRSIAVTL--------GQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDI 57
D V Y + TL G+ ++LFD E + +E D+
Sbjct: 288 DGVVYNKVTYTLLMELSVKNGKMSDAEKLFD------------------EMRERGIESDV 329
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
VY ++++ R+ + AF + +L ++G PS+ TYG +++ + G+ +
Sbjct: 330 HVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNE 389
Query: 118 VQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
+Q K + + L++ R+G DEA + ME++G +A C +
Sbjct: 390 MQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKR 449
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNI 235
+EA + ++ + K VSYT LI GN++ A +F +M + PN +T N+
Sbjct: 450 YDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNV 509
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295
M+ AY + G +EA KL M ++N ++ PD YT+ +++ D+
Sbjct: 510 MIYAYCKQGKIKEARKLRANM--EANGMD----------PDSYTYTSLIHGECIADNVDE 557
Query: 296 LELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
++ M GL N+ + MI S+AGK
Sbjct: 558 AMRLFSEMGLKGLDQNSVTYTVMISGLSKAGK 589
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 120/277 (43%), Gaps = 16/277 (5%)
Query: 57 IVVYN--AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
I VY+ V+ RR + E + ++++ +G KP A TY ++ + ++ V
Sbjct: 222 ITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGV 281
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+ ++K + N + Y +L+ + GK +A ++M RGI +Y L C
Sbjct: 282 LKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCR 341
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVT 232
G + A + D++ + P +Y LI G + A + N+M++ + V
Sbjct: 342 KGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVV 401
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ Y G+ +EA ++ M ++KG D++T NT+ KR
Sbjct: 402 FNTLIDGYCRKGMVDEASMIYDVM-----------EQKGFQ-ADVFTCNTIASCFNRLKR 449
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+D+ + RM+ G+ + + +I + G VE
Sbjct: 450 YDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVE 486
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 2/201 (0%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE-FFR 116
VV+N +++ R+ + A + ++Q+G + T + +Y+ + FR
Sbjct: 400 VVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFR 459
Query: 117 KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
++ + ++Y L++ +EG +EA +M +G+ +A Y + C GK
Sbjct: 460 MMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGK 519
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNI 235
+EA + P +YT LI + N+ A +F++M N VT +
Sbjct: 520 IKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTV 579
Query: 236 MVKAYLEHGLFEEAMKLFQEM 256
M+ + G +EA L+ EM
Sbjct: 580 MISGLSKAGKSDEAFGLYDEM 600
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++P+ + YN ++ A ++ + + A + ++ G P + TY ++ +
Sbjct: 500 VQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAM 559
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
F ++ K N++ Y V+++ L + GK+DEA ++M+R+G
Sbjct: 560 RLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKG 604
Score = 39.3 bits (90), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 94/235 (40%), Gaps = 20/235 (8%)
Query: 107 KYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+ +L E FR++ S + + ++V L R G+ +++ +++ +GI A Y
Sbjct: 204 RIDLCLEIFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYN 263
Query: 166 DLARCLCSA---GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222
+ E L M K V NK V+YT L++ + +G + +A +F++M
Sbjct: 264 TIINAYVKQRDFSGVEGVLKVMKKDGVVYNK---VTYTLLMELSVKNGKMSDAEKLFDEM 320
Query: 223 KN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281
+ ++ ++ G + A LF E+ E KGL P YT+
Sbjct: 321 RERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTE-----------KGLS-PSSYTYG 368
Query: 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWE 336
++D E++ M G++ +I R G V+ + ++
Sbjct: 369 ALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYD 423
Score = 35.4 bits (80), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 257 AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316
E S + +E+ KG + P+ YT+NT+++A ++ + +E V K M G+ +N +
Sbjct: 240 VEKSKKLIKEFSVKG-IKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYT 298
Query: 317 RMILDASRAGKVELLEITWEHL 338
++ + + GK+ E ++ +
Sbjct: 299 LLMELSVKNGKMSDAEKLFDEM 320
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 143/323 (44%), Gaps = 21/323 (6%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG 106
E + ++ P++ YN ++ + A + +++ +G P+ TY +++
Sbjct: 195 EMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLR 254
Query: 107 KYNLVYEFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
K + ++ R + K PN ++Y V++N L REG+ E + +M RRG Y
Sbjct: 255 KIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYN 314
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--K 223
L + C G +AL+ ++ + P V++YT LI + +GN+ A +QM +
Sbjct: 315 TLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVR 374
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
C PN T +V + + G EA ++ +EM ++ P + T+N +
Sbjct: 375 GLC-PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNG------------FSPSVVTYNAL 421
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARA- 341
++ + +D V + M GL + + ++ R+ V E L + E + +
Sbjct: 422 INGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGI 481
Query: 342 --DRITPPALIKERFCNRLENKD 362
D IT +LI + FC + K+
Sbjct: 482 KPDTITYSSLI-QGFCEQRRTKE 503
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 137/310 (44%), Gaps = 34/310 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTL------ 46
P+ ++Y + L + G +KE+ V+ M +L K K G
Sbjct: 273 PNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVM 332
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E L P ++ Y +++++ + A L Q++ +G P+ TY +++
Sbjct: 333 HAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQ 392
Query: 105 CGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
G N Y R++ + + P+ + Y L+N GK ++A++ +EDM+ +G+
Sbjct: 393 KGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVS 452
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y + C + +EAL ++ + KP ++Y+ LIQ + + A ++ +M
Sbjct: 453 YSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEML 512
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282
+ P+ T ++ AY G E+A++L EM E KG V+PD+ T++
Sbjct: 513 RVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVE-----------KG-VLPDVVTYSV 560
Query: 283 MLDACAAEKR 292
+++ + R
Sbjct: 561 LINGLNKQSR 570
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 74/358 (20%), Positives = 137/358 (38%), Gaps = 52/358 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR------------SLPKKKFKTGTLERWDPR 52
P+ Y ++ Q G++ E + V+ M +L TG +E
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAV 437
Query: 53 LE--------PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
LE PD+V Y+ VL+ R + A V +++ ++G KP TY +++
Sbjct: 438 LEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCE 497
Query: 105 CGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
+ + + ++ + +P + Y L+N EG ++A+ +M +G++
Sbjct: 498 QRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVT 557
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
Y L L + EA + K+ + P V+Y LI+ C NI+ + + + +K
Sbjct: 558 YSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENC---SNIEFKS-VVSLIK 613
Query: 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283
FC G+ EA ++F+ M NH PD +N M
Sbjct: 614 GFCMK---------------GMMTEADQVFESML-GKNH-----------KPDGTAYNIM 646
Query: 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
+ +YK M+ G + + ++ + GKV L H+ R+
Sbjct: 647 IHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRS 704
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 87/209 (41%), Gaps = 14/209 (6%)
Query: 122 YIPNALAYKVLVNTLWREGKTDE-AVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
++P L+Y +++ R + A + ++M + + Y L R C AG + A
Sbjct: 165 FMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVA 224
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKA 239
L DK+ P VV+Y LI I + + M PNL++ N+++
Sbjct: 225 LTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVING 284
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
G +E + EM +++G + ++ T+NT++ E + ++
Sbjct: 285 LCREGRMKEVSFVLTEM-----------NRRGYSLDEV-TYNTLIKGYCKEGNFHQALVM 332
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+ ML HGL + + +I +AG +
Sbjct: 333 HAEMLRHGLTPSVITYTSLIHSMCKAGNM 361
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/374 (19%), Positives = 158/374 (42%), Gaps = 64/374 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V S+ I + ++D M + K PD V + ++
Sbjct: 146 PDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYK---------------PDTVTFTTLI 190
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + A ++ ++ Q+G +P TYG V+ + G +L K++ + I
Sbjct: 191 HGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIE 250
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
N + Y ++++L + D+A++ +ME +G+ + Y L CLC+ G+ +A
Sbjct: 251 ANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRL 310
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--------------------- 222
+ + + P +V+++ LI A + G + A ++ +M
Sbjct: 311 LSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCM 370
Query: 223 ---------------KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
+ C PN+VT N ++ + + ++ M+LF+EM++
Sbjct: 371 LDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQ--------- 421
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
+GLV + T+ T++ + D+ ++V+K+M+ G+H N + ++ + GK
Sbjct: 422 --RGLV-GNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGK 478
Query: 328 VELLEITWEHLARA 341
+ + +E+L R+
Sbjct: 479 LAKAMVVFEYLQRS 492
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 136/291 (46%), Gaps = 25/291 (8%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EPDIV N++LN + A ++ Q+ + G KP T+ ++ + K +
Sbjct: 145 EPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVA 204
Query: 114 FF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
R VQ+ P+ + Y +VN L + G TD A++ + ME I + +Y + LC
Sbjct: 205 LIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLC 264
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
++AL ++ +P V++Y+ LI + G +A+ + + M + +PNLV
Sbjct: 265 KYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLV 324
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAE---DSN------------HINREYDKKGLV--- 273
T + ++ A+++ G +A KL++EM + D N ++R + K ++
Sbjct: 325 TFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELM 384
Query: 274 -----IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
+P++ T+NT+++ KR D +++ M GL N + +I
Sbjct: 385 IRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLI 435
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 138/314 (43%), Gaps = 40/314 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMR----------------SLPKKKFKTGTL-- 46
PD V Y ++ L + G ++++ M SL K + + L
Sbjct: 216 PDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNL 275
Query: 47 --ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
E + + P+++ Y+++++ +W A +L + ++ P+ T+ +++ +
Sbjct: 276 FTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVK 335
Query: 105 CGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK + + + +++S PN Y L+N + EA +E M R+ + +
Sbjct: 336 KGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVT 395
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLV---VSYTGLIQACLDSGNIQNAAYIFN 220
Y L C A + ++ M+ +++ + LV V+YT LI + + NA +F
Sbjct: 396 YNTLINGFCKAKRVDKG---MELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFK 452
Query: 221 QMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
QM + PN++T NI++ ++G +AM +F EY ++ + PDIYT
Sbjct: 453 QMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVF------------EYLQRSTMEPDIYT 500
Query: 280 FNTMLDACAAEKRW 293
+N M++ +W
Sbjct: 501 YNIMIEGMCKAGKW 514
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/288 (19%), Positives = 125/288 (43%), Gaps = 14/288 (4%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P I+ ++ +L+A + +++ ++++ G + TY +++ C + +L
Sbjct: 76 PSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALAL 135
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K+ K Y P+ + L+N + +AV+ V+ M G + L L
Sbjct: 136 LGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFL 195
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVT 232
K EA+ +D++ + +P +V+Y ++ G+ A + N+M+ N+V
Sbjct: 196 HNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVI 255
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
+ ++ + ++ ++A+ LF EM + KG V P++ T+++++ R
Sbjct: 256 YSTVIDSLCKYRHEDDALNLFTEM-----------ENKG-VRPNVITYSSLISCLCNYGR 303
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340
W D + M+ ++ N +I + GK+ E +E + +
Sbjct: 304 WSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIK 351
Score = 36.2 bits (82), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P+I+ YN +L+ + + A V + L++ +P TY +++E M GK+ +
Sbjct: 459 VHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKWKMGG 518
Query: 113 EFF 115
+F
Sbjct: 519 IYF 521
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 153/345 (44%), Gaps = 34/345 (9%)
Query: 37 PKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG 96
P+K FK + D +EP ++ +N +L + E A VL+++K G P A T+
Sbjct: 265 PEKSFKVRERMKAD-HIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFS 323
Query: 97 LVMEVMLACGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERR 155
++ + + K + S + NA +L+N L +EGK ++A + +
Sbjct: 324 ILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAK 383
Query: 156 GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA 215
G+V + +Y + C G A M+++ + K KP ++Y LI+ + G ++NA
Sbjct: 384 GLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENA 443
Query: 216 AYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN---------- 264
N+MK SP++ T NI++ Y F++ + +EM ++ N
Sbjct: 444 EKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINC 503
Query: 265 --------------REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHF 310
R+ + +G V P + +N ++D C ++ + +D K ML G+
Sbjct: 504 LCKGSKLLEAQIVKRDMEDRG-VSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIEL 562
Query: 311 NAKRHLRMILDASRAGKVE-----LLEITWEHLARADRITPPALI 350
N + +I S GK+ LLEI+ + L + D T +LI
Sbjct: 563 NLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGL-KPDVFTYNSLI 606
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/369 (22%), Positives = 160/369 (43%), Gaps = 43/369 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +AY + + G ++ ++ + + K K K + P + YN ++
Sbjct: 422 PDHLAYNCLIRRFCELGEME------NAEKEVNKMKLKG---------VSPSVETYNILI 466
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
R+ +++ F +L++++ G P+ +YG ++ + K R ++ +
Sbjct: 467 GGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVS 526
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P Y +L++ +GK ++A ++M ++GI + Y L L GK EA
Sbjct: 527 PKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDL 586
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLE 242
+ +I + KP V +Y LI +GN+Q ++ +MK + P L T ++++ +
Sbjct: 587 LLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTK 646
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G+ E +LF EM+ + PD+ +N +L A + + K+
Sbjct: 647 EGI-ELTERLFGEMS---------------LKPDLLVYNGVLHCYAVHGDMEKAFNLQKQ 690
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARADRITPPA----LIKERFCNR 357
M+ + + + +IL + GK+ E+ + E AR + P A +I + C
Sbjct: 691 MIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAR--EMEPEADTYNIIVKGHC-- 746
Query: 358 LENKDYGSA 366
E KDY SA
Sbjct: 747 -EVKDYMSA 754
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 111/246 (45%), Gaps = 26/246 (10%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
++PD + YN ++ + E A + ++K +G PS TY +++ G Y Y
Sbjct: 420 MKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILI------GGYGRKY 473
Query: 113 EF------FRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
EF ++++ + +PN ++Y L+N L + K EA DME RG+ +Y
Sbjct: 474 EFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYN 533
Query: 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KN 224
L CS GK E+A ++ K + +V+Y LI +G + A + ++ +
Sbjct: 534 MLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRK 593
Query: 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284
P++ T N ++ Y G + + L++EM K+ + P + T++ ++
Sbjct: 594 GLKPDVFTYNSLISGYGFAGNVQRCIALYEEM------------KRSGIKPTLKTYHLLI 641
Query: 285 DACAAE 290
C E
Sbjct: 642 SLCTKE 647
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/310 (20%), Positives = 134/310 (43%), Gaps = 22/310 (7%)
Query: 37 PKKKFKTGTLERWDPRLEPDI--VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATT 94
PK+ F +L P L+ D ++ + +LN + F+ L + +G PS+ +
Sbjct: 92 PKELFSAFSLS--SPSLKHDFSYLLLSVLLNESKMISEAADLFFAL---RNEGIYPSSDS 146
Query: 95 YGLVMEVMLACGKYNLVYEFFRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDME 153
L+++ ++ ++ + F + +S + P+ Y + + + + M+
Sbjct: 147 LTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMK 206
Query: 154 RRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQ 213
I S +Y L LC + +A D++ P +++Y LI +GN +
Sbjct: 207 HDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPE 266
Query: 214 NAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGL 272
+ + +MK + P+L+T N ++K + G+ E+A + +EM +
Sbjct: 267 KSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLG------------ 314
Query: 273 VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELL- 331
+PD +TF+ + D ++ ++ + VY+ + G+ NA ++ + GK+E
Sbjct: 315 FVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAE 374
Query: 332 EITWEHLARA 341
EI +A+
Sbjct: 375 EILGREMAKG 384
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 122/295 (41%), Gaps = 61/295 (20%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY- 108
D + P + +YN +++ C + + E AF +++ ++G + + TY +++ + GK
Sbjct: 522 DRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLS 581
Query: 109 ---NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165
+L+ E RK K P+ Y L++ G ++ E+M+R GI + Y+
Sbjct: 582 EAEDLLLEISRKGLK---PDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYH 638
Query: 166 DLARCLCSAGKCEEALMQMDKI-CKVANKPLVVSYTGLIQACLDSGNIQNA--------- 215
L LC+ +E + +++ +++ KP ++ Y G++ G+++ A
Sbjct: 639 -LLISLCT----KEGIELTERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIE 693
Query: 216 -----------AYIFNQMK--NFCS--------------PNLVTCNIMVKAYLEHGLFEE 248
+ I Q+K C P T NI+VK + E +
Sbjct: 694 KSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMS 753
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
A ++EM E KG ++ D+ N ++ E R + E+V M
Sbjct: 754 AYVWYREMQE-----------KGFLL-DVCIGNELVSGLKEEWRSKEAEIVISEM 796
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 95.5 bits (236), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 142/327 (43%), Gaps = 30/327 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P + ++ + G + ++D M+S L+ DIV+YN +
Sbjct: 201 PTVHLFTTLIRGFAKEGRVDSALSLLDEMKS---------------SSLDADIVLYNVCI 245
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-I 123
++ + + + A+ +++ G KP TY ++ V+ + + E F ++K+ +
Sbjct: 246 DSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRV 305
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P AY ++ GK DEA S +E +G + S Y + CL GK +EAL
Sbjct: 306 PCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKV 365
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
+++ K A P + +Y LI +G + A + + M K PN+ T NIMV +
Sbjct: 366 FEEMKKDA-APNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCK 424
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
+EA +F+EM D K + PD TF +++D R DD VY++
Sbjct: 425 SQKLDEACAMFEEM-----------DYK-VCTPDEITFCSLIDGLGKVGRVDDAYKVYEK 472
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE 329
ML N+ + +I + G+ E
Sbjct: 473 MLDSDCRTNSIVYTSLIKNFFNHGRKE 499
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 121/282 (42%), Gaps = 28/282 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ L +A + E ++ + + R P YN ++
Sbjct: 271 PDEVTYTSMIGVLCKANRLDEAVEMFEHLEK---------------NRRVPCTYAYNTMI 315
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+++ A+ +L++ + +G PS Y ++ + GK + + F +++K P
Sbjct: 316 MGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAP 375
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N Y +L++ L R GK D A + M++ G+ + + LC + K +EA
Sbjct: 376 NLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMF 435
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEH 243
+++ P +++ LI G + +A ++ +M + C N + ++K + H
Sbjct: 436 EEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNH 495
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285
G E+ K++++M IN+ PD+ NT +D
Sbjct: 496 GRKEDGHKIYKDM------INQNCS------PDLQLLNTYMD 525
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/301 (19%), Positives = 127/301 (42%), Gaps = 29/301 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + + S+ LG+ G + + + V + M D + +VY +++
Sbjct: 445 PDEITFCSLIDGLGKVGRVDDAYKVYEKM---------------LDSDCRTNSIVYTSLI 489
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+ E + + + Q P M+ M G+ F +++ + ++
Sbjct: 490 KNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFV 549
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+A +Y +L++ L + G +E M+ +G V Y + C GK +A
Sbjct: 550 PDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQL 609
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLE 242
++++ +P VV+Y +I + A +F + K+ N+V + ++ + +
Sbjct: 610 LEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGK 669
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +EA + +E+ + KGL P++YT+N++LDA + ++ + ++
Sbjct: 670 VGRIDEAYLILEELMQ-----------KGLT-PNLYTWNSLLDALVKAEEINEALVCFQS 717
Query: 303 M 303
M
Sbjct: 718 M 718
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 121/288 (42%), Gaps = 52/288 (18%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD +Y + L +AG E +++ SM+ + G + D YN V+
Sbjct: 550 PDARSYSILIHGLIKAGFANETYELFYSMK-------EQGCV--------LDTRAYNIVI 594
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP 124
+ + + A+ +L+++K +G +P+ TYG V++ + + + Y F + + I
Sbjct: 595 DGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIE 654
Query: 125 -NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL-- 181
N + Y L++ + G+ DEA +E++ ++G+ + + L L A + EAL
Sbjct: 655 LNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVC 714
Query: 182 -----------------MQMDKICKV----------------ANKPLVVSYTGLIQACLD 208
+ ++ +CKV KP +SYT +I
Sbjct: 715 FQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAK 774
Query: 209 SGNIQNAAYIFNQMK-NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255
+GNI A +F++ K N P+ N M++ +A LF+E
Sbjct: 775 AGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEE 822
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/372 (19%), Positives = 150/372 (40%), Gaps = 45/372 (12%)
Query: 13 IAVTLG--QAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRR 70
I + LG +A ++E +DV+ MR KFK P Y ++ A
Sbjct: 137 IEMVLGCVKANKLREGYDVVQMMR-----KFK----------FRPAFSAYTTLIGAFSAV 181
Query: 71 KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAY 129
+ + QQ+++ G +P+ + ++ G+ + +++ S + + + Y
Sbjct: 182 NHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLY 241
Query: 130 KVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK 189
V +++ + GK D A ++E G+ Y + LC A + +EA+ + + K
Sbjct: 242 NVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEK 301
Query: 190 VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEHGLFEE 248
P +Y +I +G A + + + S P+++ N ++ + G +E
Sbjct: 302 NRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDE 361
Query: 249 AMKLFQEMAEDSNHINREYD----------------------KKGLVIPDIYTFNTMLDA 286
A+K+F+EM +D+ Y+ +K + P++ T N M+D
Sbjct: 362 ALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDR 421
Query: 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL----ARAD 342
++ D+ +++ M + + +I + G+V+ +E + R +
Sbjct: 422 LCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTN 481
Query: 343 RITPPALIKERF 354
I +LIK F
Sbjct: 482 SIVYTSLIKNFF 493
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 95.5 bits (236), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 130/296 (43%), Gaps = 16/296 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDIV YN +++A + E AF ++ + +G P TY V+ + GKY E
Sbjct: 268 PDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEV 327
Query: 115 FRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F ++ +S + P++ Y+ L+ ++G E DM R +V + +
Sbjct: 328 FAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTR 387
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232
+G ++ALM + + + P V YT LIQ G I A + N+M + C+ ++VT
Sbjct: 388 SGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVT 447
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEK 291
N ++ + + EA KLF EM E + + PD YT ++D C
Sbjct: 448 YNTILHGLCKRKMLGEADKLFNEMTERA------------LFPDSYTLTILIDGHCKLGN 495
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPP 347
+ +EL +++M + + + ++ + G ++ + W + + + P
Sbjct: 496 LQNAMEL-FQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTP 550
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 135/305 (44%), Gaps = 42/305 (13%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD V Y ++ G ++E F+++++M P K F P + YN V
Sbjct: 267 YPDIVTYNTLISAYSSKGLMEEAFELMNAM---PGKGF------------SPGVYTYNTV 311
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-GLVMEVMLACGKYNLVYE---FFRKVQ 119
+N + ++E A V ++ + G P +TTY L+ME AC K ++V F
Sbjct: 312 INGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLME---ACKKGDVVETEKVFSDMRS 368
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ +P+ + + +++ R G D+A+ ++ G++ +Y L + C G
Sbjct: 369 RDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISV 428
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A+ +++ + VV+Y ++ + A +FN+M + P+ T I++
Sbjct: 429 AMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILID 488
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA-------AEK 291
+ + G + AM+LFQ+M E + D+ T+NT+LD A++
Sbjct: 489 GHCKLGNLQNAMELFQKMKEKRIRL------------DVVTYNTLLDGFGKVGDIDTAKE 536
Query: 292 RWDDL 296
W D+
Sbjct: 537 IWADM 541
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 130/290 (44%), Gaps = 15/290 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
D+V YN +L+ +RK A + ++ ++ P + T ++++ G E F
Sbjct: 444 DVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELF 503
Query: 116 RKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+K+++ I + + Y L++ + G D A DM + I+ + Y L LCS
Sbjct: 504 QKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSK 563
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVT 232
G EA D++ KP V+ +I+ SGN + +M + F P+ ++
Sbjct: 564 GHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFV-PDCIS 622
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N ++ ++ +A L ++M E+ +G ++PD++T+N++L + +
Sbjct: 623 YNTLIYGFVREENMSKAFGLVKKMEEE----------QGGLVPDVFTYNSILHGFCRQNQ 672
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILD-ASRAGKVELLEITWEHLARA 341
+ E+V ++M+ G++ + + MI S+ E I E L R
Sbjct: 673 MKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRG 722
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 118/302 (39%), Gaps = 20/302 (6%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF 115
++ N ++NA + + E L Q++++G P TY ++ + G +E
Sbjct: 234 NVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELM 293
Query: 116 RKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
+ K + P Y ++N L + GK + A +M R G+ + Y L C
Sbjct: 294 NAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKK 353
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTC 233
G E + P +V ++ ++ SGN+ A FN +K P+ V
Sbjct: 354 GDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIY 413
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
I+++ Y G+ AM L EM + + D+ T+NT+L K
Sbjct: 414 TILIQGYCRKGMISVAMNLRNEMLQQGCAM------------DVVTYNTILHGLCKRKML 461
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILD-----ASRAGKVELLEITWEHLARADRITPPA 348
+ + ++ M L F L +++D + +EL + E R D +T
Sbjct: 462 GEADKLFNEMTERAL-FPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNT 520
Query: 349 LI 350
L+
Sbjct: 521 LL 522
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/252 (19%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
V++ ++ V+ ++ A L+ +G S ++ ++ G L + ++++
Sbjct: 167 VFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEI 226
Query: 119 QKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+S + N ++VN L ++GK ++ + + ++ +G+ Y L S G
Sbjct: 227 SRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLM 286
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIM 236
EEA M+ + P V +Y +I G + A +F +M ++ SP+ T +
Sbjct: 287 EEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSL 346
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296
+ + G E K+F +M R D V+PD+ F++M+ D
Sbjct: 347 LMEACKKGDVVETEKVFSDM--------RSRD----VVPDLVCFSSMMSLFTRSGNLDKA 394
Query: 297 ELVYKRMLHHGL 308
+ + + GL
Sbjct: 395 LMYFNSVKEAGL 406
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/193 (17%), Positives = 72/193 (37%), Gaps = 18/193 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P ++Y + L GH+ E F V D M S ++P +++ N+++
Sbjct: 548 PTPISYSILVNALCSKGHLAEAFRVWDEMIS---------------KNIKPTVMICNSMI 592
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV---QKS 121
R L+++ +G P +Y ++ + + + +K+ Q
Sbjct: 593 KGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGG 652
Query: 122 YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181
+P+ Y +++ R+ + EA + M RG+ + Y + S EA
Sbjct: 653 LVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAF 712
Query: 182 MQMDKICKVANKP 194
D++ + P
Sbjct: 713 RIHDEMLQRGFSP 725
>sp|Q9SZ10|PP338_ARATH Pentatricopeptide repeat-containing protein At4g26680,
mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2
SV=1
Length = 521
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 123/283 (43%), Gaps = 31/283 (10%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
V++++ K++ A Q+K G P+ + M +L G+ ++ F+R++
Sbjct: 170 VFDSLFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREM 229
Query: 119 QKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
++ I PN ++++ R GK D+ + ++DMER G + Y L C G
Sbjct: 230 RRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLL 289
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIM 236
AL + + K +P VV++ LI + +Q A+ +F +MK +PN VT N +
Sbjct: 290 SSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTL 349
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINR--------------------------EYDKK 270
+ Y + G E A + +++M N I R E DK+
Sbjct: 350 INGYSQQGDHEMAFRFYEDMV--CNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKE 407
Query: 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK 313
LV P+ TF+ ++ K D +YK M+ G H N +
Sbjct: 408 NLV-PNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQ 449
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 85/205 (41%), Gaps = 2/205 (0%)
Query: 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117
V YN ++ + A + + + G +P+ T+ ++ K + F +
Sbjct: 274 VSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGE 333
Query: 118 VQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
++ + PN + Y L+N ++G + A EDM GI Y L LC K
Sbjct: 334 MKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAK 393
Query: 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNI 235
+A + ++ K P +++ LI N ++ M ++ C PN T N+
Sbjct: 394 TRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNM 453
Query: 236 MVKAYLEHGLFEEAMKLFQEMAEDS 260
+V A+ + F+ A ++ +EM S
Sbjct: 454 LVSAFCRNEDFDGASQVLREMVRRS 478
Score = 39.7 bits (91), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 74/175 (42%), Gaps = 20/175 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+TV Y ++ Q G + F + M ++ DI+ YNA++
Sbjct: 341 PNTVTYNTLINGYSQQGDHEMAFRFYEDMVC---------------NGIQRDILTYNALI 385
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL--VYEFFRKVQKSY 122
++ + A +++L ++ P+++T+ + +M C + N +E ++ + +S
Sbjct: 386 FGLCKQAKTRKAAQFVKELDKENLVPNSSTFSAL--IMGQCVRKNADRGFELYKSMIRSG 443
Query: 123 I-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176
PN + +LV+ R D A + +M RR I + + + L GK
Sbjct: 444 CHPNEQTFNMLVSAFCRNEDFDGASQVLREMVRRSIPLDSRTVHQVCNGLKHQGK 498
Score = 32.7 bits (73), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 116/305 (38%), Gaps = 55/305 (18%)
Query: 98 VMEVMLACGK-YNLVYEFFR--KVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154
V V+L K Y L EFF K + + + ++++TL + K A S + D+
Sbjct: 84 VKNVLLKIQKDYLLSLEFFNWAKTRNPGSHSLETHAIVLHTLTKNRKFKSAESILRDVLV 143
Query: 155 RGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANK--------------------P 194
G V A +D L S +C+ D + K P
Sbjct: 144 NGGVDLPAKVFDA--LLYSYRECDSTPRVFDSLFKTFAHLKKFRNATDTFMQMKDYGFLP 201
Query: 195 LVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC--SPNLVTCNIMVKAYLEHGLFEEAMKL 252
V S + + L G + A + +M+ C SPN T N+++ Y G ++ ++L
Sbjct: 202 TVESCNAYMSSLLGQGRVDIALRFYREMRR-CKISPNPYTLNMVMSGYCRSGKLDKGIEL 260
Query: 253 FQEM------AEDS--NHINREYDKKGLVI---------------PDIYTFNTMLDACAA 289
Q+M A D N + + +KGL+ P++ TFNT++
Sbjct: 261 LQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCR 320
Query: 290 EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA----RADRIT 345
+ + V+ M + N + +I S+ G E+ +E + + D +T
Sbjct: 321 AMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILT 380
Query: 346 PPALI 350
ALI
Sbjct: 381 YNALI 385
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 126/278 (45%), Gaps = 13/278 (4%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P++V Y +L V R E A VL+++ +G P ATTY ++M+ G+++
Sbjct: 222 LVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAA 281
Query: 113 EFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
++K+ I PN + Y V++ L +E K+ EA + ++M R + ++L + L
Sbjct: 282 TVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDAL 341
Query: 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV 231
C K +EA K+ K P + LI G + A +F++ + P+L+
Sbjct: 342 CEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGSIPSLL 401
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++ E G EA +L+ +M Y++K P+ +T+N +++ +
Sbjct: 402 TYNTLIAGMCEKGELTEAGRLWDDM----------YERK--CKPNAFTYNVLIEGLSKNG 449
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ V + ML G N L + + GK E
Sbjct: 450 NVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEE 487
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 120/279 (43%), Gaps = 32/279 (11%)
Query: 27 FDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ 86
FD++ +M K+ F + P+I N ++ A ++ E A+ VL ++
Sbjct: 171 FDLVHAMFKNSKESFG----------ITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSM 220
Query: 87 GQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYIPNALAYKVLVNTLWREGKTDEA 145
G P+ TY ++ +A G + + + + P+A Y VL++ + G+ EA
Sbjct: 221 GLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEA 280
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+ ++DME+ I + Y + R LC K EA D++ + + P +I A
Sbjct: 281 ATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDA 340
Query: 206 CLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
+ + A ++ +M KN C P+ + ++ + G EA KLF E + S
Sbjct: 341 LCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGS---- 396
Query: 265 REYDKKGLVIPDIYTFNTML-------DACAAEKRWDDL 296
IP + T+NT++ + A + WDD+
Sbjct: 397 ---------IPSLLTYNTLIAGMCEKGELTEAGRLWDDM 426
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 106/238 (44%), Gaps = 15/238 (6%)
Query: 72 QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY--IPNALAY 129
++E + + ++ G K S + ++ V++ +++LV+ F+ ++S+ PN
Sbjct: 135 RYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTC 194
Query: 130 KVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK 189
+LV L ++ + A ++++ G+V + Y + + G E A ++++
Sbjct: 195 NLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLD 254
Query: 190 VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEE 248
P +YT L+ G AA + + M KN PN VT +M++A + E
Sbjct: 255 RGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGE 314
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306
A +F EM E S +PD ++DA + + D+ ++++ML +
Sbjct: 315 ARNMFDEMLERS------------FMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKN 360
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 113/265 (42%), Gaps = 19/265 (7%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
YPD Y + + G E V+D M +EP+ V Y +
Sbjct: 258 YPDATTYTVLMDGYCKLGRFSEAATVMDDMEK---------------NEIEPNEVTYGVM 302
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY- 122
+ A + K+ A + ++ ++ P ++ V++ + K + +RK+ K+
Sbjct: 303 IRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNC 362
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
+P+ L++ L +EG+ EA ++ E+ G + S Y L +C G+ EA
Sbjct: 363 MPDNALLSTLIHWLCKEGRVTEARKLFDEFEK-GSIPSLLTYNTLIAGMCEKGELTEAGR 421
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYL 241
D + + KP +Y LI+ +GN++ + +M C PN T I+ +
Sbjct: 422 LWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQ 481
Query: 242 EHGLFEEAMKLFQEMAEDSNHINRE 266
+ G E+AMK+ MA + +++E
Sbjct: 482 KLGKEEDAMKIVS-MAVMNGKVDKE 505
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 138/297 (46%), Gaps = 17/297 (5%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF- 114
D+ + +++ R + A VL ++ + G +PS T+G ++ + +
Sbjct: 105 DLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLV 164
Query: 115 FRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174
V+ Y PN + Y L++ L + G+ + A+ + +ME++G+ Y L LC +
Sbjct: 165 ILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYS 224
Query: 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTC 233
G+ +A + + K + P VV++T LI + GN+ A ++ +M ++ PN VT
Sbjct: 225 GRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTY 284
Query: 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293
N ++ HG +A K F MA KG P++ T+NT++ +
Sbjct: 285 NSIINGLCMHGRLYDAKKTFDLMA-----------SKG-CFPNVVTYNTLISGFCKFRMV 332
Query: 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL-LEITWEHLARADRITPPAL 349
D+ +++RM G + + + +I + GK+ + L+I ++R R+TP +
Sbjct: 333 DEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSR--RVTPDII 387
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/325 (21%), Positives = 133/325 (40%), Gaps = 31/325 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L + G + ++++ M K G L D+V YN +L
Sbjct: 174 PNVVVYNTLIDGLCKNGELNIALELLNEME-------KKG--------LGADVVTYNTLL 218
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSYI 123
+W A +L+ + ++ P T+ +++V + G + E +++ +Q S
Sbjct: 219 TGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVD 278
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y ++N L G+ +A + M +G + Y L C +E +
Sbjct: 279 PNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKL 338
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ + +Y LI G ++ A IF M +P+++T I++
Sbjct: 339 FQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCV 398
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYK 301
+G E A+ F +M E +I I +N M+ C A+K EL +
Sbjct: 399 NGEIESALVKFDDMRESEKYIG------------IVAYNIMIHGLCKADKVEKAWEL-FC 445
Query: 302 RMLHHGLHFNAKRHLRMILDASRAG 326
R+ G+ +A+ + MIL + G
Sbjct: 446 RLPVEGVKPDARTYTIMILGLCKNG 470
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/346 (21%), Positives = 137/346 (39%), Gaps = 29/346 (8%)
Query: 8 VAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNAC 67
+ Y VT G H L + I SL K+G EP++VVYN +++
Sbjct: 135 LGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSG--------YEPNVVVYNTLIDGL 186
Query: 68 VRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNA 126
+ + A +L +++++G TY ++ + G+++ R + K I P+
Sbjct: 187 CKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDV 246
Query: 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK 186
+ + L++ ++G DEA ++M + + + Y + LC G+ +A D
Sbjct: 247 VTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDL 306
Query: 187 ICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHG 244
+ P VV+Y LI + +F +M + F + ++ T N ++ Y + G
Sbjct: 307 MASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGF-NADIFTYNTLIHGYCQVG 365
Query: 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304
A+ +F M ++R V PDI T +L + + + M
Sbjct: 366 KLRVALDIFCWM------VSRR------VTPDIITHCILLHGLCVNGEIESALVKFDDMR 413
Query: 305 HHGLHFNAKRHLRMILDASRAGKVELLEITWEHLAR--ADRITPPA 348
+ + MI +A KVE WE R + + P A
Sbjct: 414 ESEKYIGIVAYNIMIHGLCKADKVEK---AWELFCRLPVEGVKPDA 456
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 18/221 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y SI L G + + D M S K F P++V YN ++
Sbjct: 279 PNNVTYNSIINGLCMHGRLYDAKKTFDLMAS--KGCF-------------PNVVTYNTLI 323
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKSYI 123
+ + + + + Q++ +G TY ++ GK + + F V +
Sbjct: 324 SGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVT 383
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDM-ERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ + + +L++ L G+ + A+ +DM E +G A Y + LC A K E+A
Sbjct: 384 PDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVA-YNIMIHGLCKADKVEKAWE 442
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223
++ KP +YT +I +G + A + +MK
Sbjct: 443 LFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMK 483
Score = 37.0 bits (84), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/108 (19%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV 111
R+ PDI+ + +L+ + E A +++ + Y +++ + K
Sbjct: 381 RVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKA 440
Query: 112 YEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+E F ++ + P+A Y +++ L + G EA + M+ GI+
Sbjct: 441 WELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGII 488
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 137/302 (45%), Gaps = 30/302 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V + + L +AG+ E FD +D MR D + P++ YN ++
Sbjct: 361 PDVVTFTILVDALCKAGNFGEAFDTLDVMR---------------DQGILPNLHTYNTLI 405
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYI 123
+R + + A + ++ G KP+A TY + ++ G E F K++ K
Sbjct: 406 CGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIA 465
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN +A + +L + G+ EA ++ G+V + Y + +C G+ +EA+
Sbjct: 466 PNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKL 525
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
+ ++ + +P V+ LI + + A +F +MK P +VT N ++ +
Sbjct: 526 LSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGK 585
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYK 301
+G +EA++LF+ M + KG P+ TFNT+ D C ++ L++++K
Sbjct: 586 NGKIQEAIELFEGMVQ-----------KG-CPPNTITFNTLFDCLCKNDEVTLALKMLFK 633
Query: 302 RM 303
M
Sbjct: 634 MM 635
Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 134/315 (42%), Gaps = 31/315 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + G++G I ELF++ M + E + + +N V+
Sbjct: 818 PDVATYNFLLDAYGKSGKIDELFELYKEMST---------------HECEANTITHNIVI 862
Query: 65 NACVRRKQWEGAFWVLQQL-KQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSY 122
+ V+ + A + L + P+A TYG +++ + G+ + F +
Sbjct: 863 SGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGC 922
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN Y +L+N + G+ D A + + M + G+ Y L CLC G+ +E L
Sbjct: 923 RPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLH 982
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF--CSPNLVTCNIMVKAY 240
++ + P VV Y +I S ++ A +FN+MK +P+L T N ++
Sbjct: 983 YFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNL 1042
Query: 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300
G+ EEA K++ E+ + GL P+++TFN ++ + + + VY
Sbjct: 1043 GIAGMVEEAGKIYNEI-----------QRAGLE-PNVFTFNALIRGYSLSGKPEHAYAVY 1090
Query: 301 KRMLHHGLHFNAKRH 315
+ M+ G N +
Sbjct: 1091 QTMVTGGFSPNTGTY 1105
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/362 (20%), Positives = 145/362 (40%), Gaps = 64/362 (17%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + LG+AG I E ++++ M D PD+V Y ++
Sbjct: 256 PNVYTFTICIRVLGRAGKINEAYEILKRMD---------------DEGCGPDVVTYTVLI 300
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+A ++ + A V +++K KP TY +++ + V +F+ +++K ++
Sbjct: 301 DALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHV 360
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + + +LV+ L + G EA ++ M +GI+ + Y L L + ++AL
Sbjct: 361 PDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEL 420
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPNLVTC--------- 233
+ + KP +Y I SG+ +A F +MK +PN+V C
Sbjct: 421 FGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAK 480
Query: 234 --------------------------NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY 267
N+M+K Y + G +EA+KL EM E+
Sbjct: 481 AGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCE----- 535
Query: 268 DKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327
PD+ N++++ R D+ ++ RM L + ++ + GK
Sbjct: 536 -------PDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGK 588
Query: 328 VE 329
++
Sbjct: 589 IQ 590
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 110/250 (44%), Gaps = 16/250 (6%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ VA + +L +AG +E + ++ D L PD V YN ++
Sbjct: 466 PNIVACNASLYSLAKAGRDREAKQIFYGLK---------------DIGLVPDSVTYNMMM 510
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + + A +L ++ + G +P ++ + + + ++ F ++++ +
Sbjct: 511 KCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLK 570
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P + Y L+ L + GK EA+ E M ++G + + L CLC + AL
Sbjct: 571 PTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKM 630
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243
+ K+ + P V +Y +I + +G ++ A F+QMK P+ VT ++ ++
Sbjct: 631 LFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKA 690
Query: 244 GLFEEAMKLF 253
L E+A K+
Sbjct: 691 SLIEDAYKII 700
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/338 (21%), Positives = 138/338 (40%), Gaps = 31/338 (9%)
Query: 13 IAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQ 72
I L +AG ID+ S ++ G D L P I+ Y+ +
Sbjct: 720 IGSILAEAG--------IDNAVSFSERLVANGICRDGDSILVP-IIRYSC------KHNN 764
Query: 73 WEGAFWVLQQL-KQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YIPNALAYK 130
GA + ++ K G +P TY L++ +L + + F +V+ + IP+ Y
Sbjct: 765 VSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYN 824
Query: 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL-MQMDKICK 189
L++ + GK DE ++M + + + L AG ++AL + D +
Sbjct: 825 FLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSD 884
Query: 190 VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEE 248
P +Y LI SG + A +F M ++ C PN NI++ + + G +
Sbjct: 885 RDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADA 944
Query: 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
A LF+ M ++ V PD+ T++ ++D R D+ +K + GL
Sbjct: 945 ACALFKRMVKEG------------VRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGL 992
Query: 309 HFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346
+ + + +I ++ ++E + + + + ITP
Sbjct: 993 NPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITP 1030
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 130/285 (45%), Gaps = 22/285 (7%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK---YNLVYEFFR 116
YN +++ ++ + A V +++ +G +PS TY +M+ GK + V +
Sbjct: 191 YNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYS---SLMVGLGKRRDIDSVMGLLK 247
Query: 117 KVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
+++ + PN + + + L R GK +EA ++ M+ G Y L LC+A
Sbjct: 248 EMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTAR 307
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCN 234
K + A +K+ +KP V+Y L+ D+ ++ + +++M K+ P++VT
Sbjct: 308 KLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFT 367
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
I+V A + G F EA M + ++P+++T+NT++ R D
Sbjct: 368 ILVDALCKAGNFGEAFDTLDVMRDQG------------ILPNLHTYNTLICGLLRVHRLD 415
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMILDASRAG-KVELLEITWEHL 338
D ++ M G+ A ++ I ++G V LE T+E +
Sbjct: 416 DALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALE-TFEKM 459
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 73/357 (20%), Positives = 148/357 (41%), Gaps = 41/357 (11%)
Query: 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
M P V Y ++ LG+ G I+E ++ + M +++ P P+ + +
Sbjct: 567 MKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGM------------VQKGCP---PNTITF 611
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N + + + + A +L ++ G P TY ++ ++ G+ FF +++K
Sbjct: 612 NTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKK 671
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY-DLARCLCSAGKCEE 179
P+ + L+ + + ++A + + A L++ DL + + +
Sbjct: 672 LVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDN 731
Query: 180 AL-----MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--FCSPNLVT 232
A+ + + IC+ + LV +I+ N+ A +F + P L T
Sbjct: 732 AVSFSERLVANGICRDGDSILVP----IIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPT 787
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
N+++ LE + E A +F ++ K IPD+ T+N +LDA +
Sbjct: 788 YNLLIGGLLEADMIEIAQDVFLQV------------KSTGCIPDVATYNFLLDAYGKSGK 835
Query: 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARADRITPPA 348
D+L +YK M H N H +I +AG V + L++ ++ ++ D +P A
Sbjct: 836 IDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRD-FSPTA 891
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Query: 47 ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLK-QQGQKPSATTYGLVMEVMLAC 105
E + L PD+V YN ++N + + E A + ++K +G P TY ++ +
Sbjct: 986 ELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIA 1045
Query: 106 GKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164
G + + ++Q++ + PN + L+ GK + A + + M G + Y
Sbjct: 1046 GMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTY 1105
Query: 165 YDL 167
L
Sbjct: 1106 EQL 1108
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 99/241 (41%), Gaps = 23/241 (9%)
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA 191
++ L +GK +E + M++R I Y + + L G ++A + K+ +
Sbjct: 124 MLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFG 183
Query: 192 NKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSPNLVTCNIMVKAYLEHGLFEEA 249
SY GLI L S A ++ +M + F P+L T + ++ + +
Sbjct: 184 FVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGF-RPSLQTYSSLMVGLGKRRDIDSV 242
Query: 250 MKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH 309
M L +EM + GL P++YTF + + ++ + KRM G
Sbjct: 243 MGLLKEM-----------ETLGLK-PNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCG 290
Query: 310 FNAKRHLRMILDASRAGKVELLEITWEHLA----RADRITPPALIKERFCNRLENKDYGS 365
+ + +I A K++ + +E + + DR+T L+ +RF +N+D S
Sbjct: 291 PDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLL-DRFS---DNRDLDS 346
Query: 366 A 366
Sbjct: 347 V 347
>sp|Q7X6A5|PPR81_ARATH Pentatricopeptide repeat-containing protein At1g55630
OS=Arabidopsis thaliana GN=At1g55630 PE=2 SV=1
Length = 477
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 115/257 (44%), Gaps = 18/257 (7%)
Query: 3 SYPDTV-AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYN 61
YP T + + T G+AG +++ + ++ + +K YN
Sbjct: 182 GYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHS---------------YN 226
Query: 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQK 120
A+L++ + KQ++ WV +Q+ + G P TY +VM GK + +Y + V+
Sbjct: 227 AILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKD 286
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+ P+ Y +L++ L K A++ + M G+ + L L AGK E
Sbjct: 287 GFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEAC 346
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCNIMVKA 239
MD+ KV P VV YT +I + G ++ A +F +M PN+ T N M++
Sbjct: 347 KYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRG 406
Query: 240 YLEHGLFEEAMKLFQEM 256
+ G F+EA L +EM
Sbjct: 407 FCMAGKFKEACALLKEM 423
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 116/244 (47%), Gaps = 18/244 (7%)
Query: 89 KPSATTYGLVMEVMLACGKYNL---VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEA 145
+P +Y ++ +L +Y L VYE + ++ + P+ L Y +++ +R GKTD
Sbjct: 219 RPYKHSYNAILHSLLGVKQYKLIDWVYE--QMLEDGFTPDVLTYNIVMFANFRLGKTDRL 276
Query: 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205
+++M + G Y L L + K AL ++ + +V +P V+ +T LI
Sbjct: 277 YRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDG 336
Query: 206 CLDSGNIQNAAYIFNQ-MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264
+G ++ Y ++ +K C+P++V +M+ Y+ G E+A ++F+EM E
Sbjct: 337 LSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQ--- 393
Query: 265 REYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASR 324
+P+++T+N+M+ ++ + + K M G + N + ++ +
Sbjct: 394 ---------LPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNLKN 444
Query: 325 AGKV 328
AGKV
Sbjct: 445 AGKV 448
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 62/129 (48%), Gaps = 1/129 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+EP ++ + +++ R + E + + + + G P Y +++ ++ G+
Sbjct: 323 VEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAE 382
Query: 113 EFFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171
E F+++ +K +PN Y ++ GK EA + +++ME RG + +Y L L
Sbjct: 383 EMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNL 442
Query: 172 CSAGKCEEA 180
+AGK EA
Sbjct: 443 KNAGKVLEA 451
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD+V Y ++ + + E A + +++ ++GQ P+ TY ++ GK+
Sbjct: 360 PDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACAL 419
Query: 115 FRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156
++++ + PN + Y LVN L GK EA V+DM +G
Sbjct: 420 LKEMESRGCNPNFVVYSTLVNNLKNAGKVLEAHEVVKDMVEKG 462
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 92.0 bits (227), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 141/330 (42%), Gaps = 52/330 (15%)
Query: 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ-KPSATTYGLVMEVMLACGKYNLVYEF 114
++ +N ++N + E A +L+++ + + P TY +++ M G+ + + E
Sbjct: 203 NVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKEL 262
Query: 115 FRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
++K+ +PN + Y LV + G EA VE M++ ++ Y L LC+
Sbjct: 263 LLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCN 322
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN--------- 224
AG E L MD + + +P VV+Y LI C + G A + QM+N
Sbjct: 323 AGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVT 382
Query: 225 -------FC---------------------SPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
C SP++VT + ++KAYL+ G A+++ +EM
Sbjct: 383 HNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREM 442
Query: 257 AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316
+ KG+ + I T NT+LDA E++ D+ + G + +
Sbjct: 443 GQ-----------KGIKMNTI-TLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYG 490
Query: 317 RMILDASRAGKVELLEITWEHLARADRITP 346
+I+ R KVE W+ + + +ITP
Sbjct: 491 TLIMGFFREEKVEKALEMWDEMKKV-KITP 519
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 121/257 (47%), Gaps = 15/257 (5%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PDIV Y+ ++ A ++ GA +++++ Q+G K + T +++ + K + +
Sbjct: 414 PDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNL 473
Query: 115 FRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
K +I + + Y L+ +RE K ++A+ ++M++ I + + + L LC
Sbjct: 474 LNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCH 533
Query: 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ-MKNFCSPNLVT 232
GK E A+ + D++ + P ++ +I G ++ A +N+ +K+ P+ T
Sbjct: 534 HGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYT 593
Query: 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292
CNI++ + G+ E+A+ F + E+ RE D T+NTM+ A +K+
Sbjct: 594 CNILLNGLCKEGMTEKALNFFNTLIEE-----REV--------DTVTYNTMISAFCKDKK 640
Query: 293 WDDLELVYKRMLHHGLH 309
+ + M GL
Sbjct: 641 LKEAYDLLSEMEEKGLE 657
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 132/310 (42%), Gaps = 36/310 (11%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + L AG ++E +++D+M+SL +L+PD+V YN ++
Sbjct: 308 PDLCTYNILINGLCNAGSMREGLELMDAMKSL---------------KLQPDVVTYNTLI 352
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK---- 120
+ C A +++Q++ G K + T+ + ++ + K V RKV++
Sbjct: 353 DGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVT---RKVKELVDM 409
Query: 121 -SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
+ P+ + Y L+ + G A+ + +M ++GI + + LC K +E
Sbjct: 410 HGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDE 469
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVK 238
A ++ K V+Y LI ++ A ++++MK +P + T N ++
Sbjct: 470 AHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIG 529
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
HG E AM+ F E+AE ++PD TFN+++ E R +
Sbjct: 530 GLCHHGKTELAMEKFDELAESG------------LLPDDSTFNSIILGYCKEGRVEKAFE 577
Query: 299 VYKRMLHHGL 308
Y + H
Sbjct: 578 FYNESIKHSF 587
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 133/305 (43%), Gaps = 37/305 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y +I + + G + +L +++ M+ K G L P+ V YN ++
Sbjct: 238 PDNVTYNTILKAMSKKGRLSDLKELLLDMK-------KNG--------LVPNRVTYNNLV 282
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
+ + AF +++ +KQ P TY +++ + G E ++ +
Sbjct: 283 YGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQ 342
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y L++ + G + EA +E ME G+ + + + LC K E +
Sbjct: 343 PDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRK 402
Query: 184 MDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
+ ++ + P +V+Y LI+A L G++ A + +M + N +T N ++ A
Sbjct: 403 VKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALC 462
Query: 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR-------WD 294
+ +EA L +S H K+G ++ ++ T+ T++ E++ WD
Sbjct: 463 KERKLDEAHNLL-----NSAH------KRGFIVDEV-TYGTLIMGFFREEKVEKALEMWD 510
Query: 295 DLELV 299
+++ V
Sbjct: 511 EMKKV 515
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 100/217 (46%), Gaps = 19/217 (8%)
Query: 90 PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSA 148
PS + + + L GK ++ + F+K+ + + PN L L+ L R + SA
Sbjct: 129 PSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSA 188
Query: 149 VE---DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK-ICKVANKPLVVSYTGLIQ 204
E DM + G+ + + L C GK E+AL +++ + + P V+Y +++
Sbjct: 189 REVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILK 248
Query: 205 ACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263
A G + + + M KN PN VT N +V Y + G +EA ++ + M
Sbjct: 249 AMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELM------- 301
Query: 264 NREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELV 299
K+ V+PD+ T+N +++ C A + LEL+
Sbjct: 302 -----KQTNVLPDLCTYNILINGLCNAGSMREGLELM 333
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 15/153 (9%)
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL---DSGNIQNAA 216
S AL+ GK AL K+ ++ KP +++ L+ + S +I +A
Sbjct: 130 SKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAR 189
Query: 217 YIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275
+F+ M K S N+ T N++V Y G E+A+ + + M + V P
Sbjct: 190 EVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFK-----------VNP 238
Query: 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
D T+NT+L A + + R DL+ + M +GL
Sbjct: 239 DNVTYNTILKAMSKKGRLSDLKELLLDMKKNGL 271
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
E D V YN +++A + K+ + A+ +L +++++G +P TY + +++ GK + E
Sbjct: 622 EVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDE 681
Query: 114 FFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
+K + ++ R+ + + + + + A Y D+ LCS
Sbjct: 682 LLKKFSGKF-----------GSMKRDLQVETEKNPATSESKEELNTEAIAYSDVIDELCS 730
Query: 174 AGKCEE 179
G+ +E
Sbjct: 731 RGRLKE 736
Score = 39.7 bits (91), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 4/139 (2%)
Query: 46 LERWDPRLE----PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
+E++D E PD +N+++ + + E AF + + KP T +++
Sbjct: 541 MEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNG 600
Query: 102 MLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA 161
+ G FF + + + + Y +++ ++ K EA + +ME +G+
Sbjct: 601 LCKEGMTEKALNFFNTLIEEREVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDR 660
Query: 162 ALYYDLARCLCSAGKCEEA 180
Y L GK E
Sbjct: 661 FTYNSFISLLMEDGKLSET 679
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 92.0 bits (227), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 126/281 (44%), Gaps = 14/281 (4%)
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK-YNLVYEFFRKVQ 119
N +LN R Q A L ++ + G +PS T+G ++ + Y+ +Y F + V
Sbjct: 120 NILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVG 179
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
Y PN + Y +++ L + + D A+ + ME+ GI Y L LCS+G+ +
Sbjct: 180 MGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSD 239
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A + + K P V ++ LI AC+ G + A + +M + P++VT ++++
Sbjct: 240 ATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIY 299
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ +EA ++F M KG PD+ T++ +++ K+ +
Sbjct: 300 GLCMYSRLDEAEEMFGFMVS-----------KG-CFPDVVTYSILINGYCKSKKVEHGMK 347
Query: 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339
++ M G+ N + +I RAGK+ + E + +
Sbjct: 348 LFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMV 388
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 134/306 (43%), Gaps = 29/306 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD V Y S+ L +G + ++ M + PD+ +NA++
Sbjct: 219 PDVVTYNSLISGLCSSGRWSDATRMVSCMTK---------------REIYPDVFTFNALI 263
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR-KVQKSYI 123
+ACV+ + A +++ ++ P TY L++ + + + E F V K
Sbjct: 264 DACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCF 323
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + Y +L+N + K + + +M +RG+V + Y L + C AGK A
Sbjct: 324 PDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEI 383
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
++ P +++Y L+ D+G I+ A I M KN ++VT NI+++ +
Sbjct: 384 FRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCK 443
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
G +A ++ + + +GL +PDI+T+ TM+ + + + ++++
Sbjct: 444 AGEVADAWDIYCSL-----------NCQGL-MPDIWTYTTMMLGLYKKGLRREADALFRK 491
Query: 303 MLHHGL 308
M G+
Sbjct: 492 MKEDGI 497
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 122/278 (43%), Gaps = 14/278 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
EP IV + ++LN R + A ++ Q+ G KP+ Y +++ + + + +
Sbjct: 148 EPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALD 207
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+++K I P+ + Y L++ L G+ +A V M +R I + L
Sbjct: 208 LLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACV 267
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
G+ EA +++ + + P +V+Y+ LI + A +F M C P++V
Sbjct: 268 KEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVV 327
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T +I++ Y + E MKLF EM++ V+ + T+ ++
Sbjct: 328 TYSILINGYCKSKKVEHGMKLFCEMSQRG------------VVRNTVTYTILIQGYCRAG 375
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329
+ + E +++RM+ G+H N + ++ GK+E
Sbjct: 376 KLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIE 413
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 122/277 (44%), Gaps = 14/277 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+P++V+YN +++ + KQ + A +L ++++ G P TY ++ + + G+++
Sbjct: 183 KPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATR 242
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
+ K I P+ + L++ +EG+ EA E+M RR + Y L LC
Sbjct: 243 MVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLC 302
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
+ +EA + P VV+Y+ LI S +++ +F +M + N V
Sbjct: 303 MYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTV 362
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T I+++ Y G A ++F+ M H P+I T+N +L
Sbjct: 363 TYTILIQGYCRAGKLNVAEEIFRRMVFCGVH------------PNIITYNVLLHGLCDNG 410
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328
+ + ++ M +G+ + + +I +AG+V
Sbjct: 411 KIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEV 447
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 111/251 (44%), Gaps = 14/251 (5%)
Query: 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119
Y +L +R + + + + + Q PS + ++ + KY++V + ++Q
Sbjct: 49 YREMLRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQ 108
Query: 120 KSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178
IP N +L+N R + A+S + M + G S + L C +
Sbjct: 109 MLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVY 168
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMV 237
+AL D++ + KP VV Y +I S + NA + N+M K+ P++VT N ++
Sbjct: 169 DALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLI 228
Query: 238 KAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297
G + +A ++ M + RE + PD++TFN ++DAC E R + E
Sbjct: 229 SGLCSSGRWSDATRMVSCMTK------RE------IYPDVFTFNALIDACVKEGRVSEAE 276
Query: 298 LVYKRMLHHGL 308
Y+ M+ L
Sbjct: 277 EFYEEMIRRSL 287
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+ P+I+ YN +L+ + E A +L +++ G TY +++ M G+ +
Sbjct: 392 VHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAW 451
Query: 113 EFFRKVQ-KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158
+ + + + +P+ Y ++ L+++G EA + M+ GI+
Sbjct: 452 DIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGIL 498
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/349 (22%), Positives = 150/349 (42%), Gaps = 30/349 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y ++ L + I E ++D M+S P V+YN ++
Sbjct: 220 PDGYTYCTLMDGLCKEERIDEAVLLLDEMQS---------------EGCSPSPVIYNVLI 264
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RKVQKSYI 123
+ ++ ++ + +G P+ TY ++ + GK + R V I
Sbjct: 265 DGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCI 324
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN + Y L+N L ++ + +AV + ME RG + +Y L L GK EEA+
Sbjct: 325 PNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSL 384
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLE 242
K+ + KP +V Y+ L+ G A I N+M + C PN T + ++K + +
Sbjct: 385 WRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFK 444
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302
GL EEA+++++EM + N+ + ++ ++D R + +V+ +
Sbjct: 445 TGLCEEAVQVWKEMDKTGCSRNK------------FCYSVLIDGLCGVGRVKEAMMVWSK 492
Query: 303 MLHHGLHFNAKRHLRMILDASRAGKVE-LLEITWEHLARADRITPPALI 350
ML G+ + + +I G ++ L++ E L + + + P ++
Sbjct: 493 MLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVV 541
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 135/308 (43%), Gaps = 32/308 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y ++ L G + + +++ M S + P+ V Y ++
Sbjct: 290 PNEVTYNTLIHGLCLKGKLDKAVSLLERMVS---------------SKCIPNDVTYGTLI 334
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSYI 123
N V++++ A +L ++++G + Y +++ + GK +RK+ +K
Sbjct: 335 NGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCK 394
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM- 182
PN + Y VLV+ L REGK +EA + M G + +A Y L + G CEEA+
Sbjct: 395 PNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQV 454
Query: 183 --QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239
+MDK NK Y+ LI G ++ A ++++M P+ V + ++K
Sbjct: 455 WKEMDKTGCSRNK---FCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKG 511
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
G + A+KL+ EM + +E K PD+ T+N +LD +K +
Sbjct: 512 LCGIGSMDAALKLYHEM------LCQEEPKSQ---PDVVTYNILLDGLCMQKDISRAVDL 562
Query: 300 YKRMLHHG 307
ML G
Sbjct: 563 LNSMLDRG 570
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 111/235 (47%), Gaps = 21/235 (8%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFF-RK 117
+Y+ +++ + + E A + +++ ++G KP+ Y ++++ + GK N E R
Sbjct: 364 IYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRM 423
Query: 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
+ +PNA Y L+ ++ G +EAV ++M++ G + Y L LC G+
Sbjct: 424 IASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRV 483
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC------SPNLV 231
+EA+M K+ + KP V+Y+ +I+ G++ A ++++M C P++V
Sbjct: 484 KEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEM--LCQEEPKSQPDVV 541
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
T NI++ A+ L M ++R D PD+ T NT L+
Sbjct: 542 TYNILLDGLCMQKDISRAVDLLNSM------LDRGCD------PDVITCNTFLNT 584
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/309 (20%), Positives = 125/309 (40%), Gaps = 27/309 (8%)
Query: 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118
V N ++N + + E +V+ P+ ++ LV++ + + E FR +
Sbjct: 154 VLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGM 213
Query: 119 -QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177
++ +P+ Y L++ L +E + DEAV +++M+ G S +Y L LC G
Sbjct: 214 PERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDL 273
Query: 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIM 236
+D + P V+Y LI G + A + +M + C PN VT +
Sbjct: 274 TRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTL 333
Query: 237 VKAYLEHGLFEEAMKLFQEMAEDSNHIN------------------------REYDKKGL 272
+ ++ +A++L M E H+N R+ +KG
Sbjct: 334 INGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKG- 392
Query: 273 VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLE 332
P+I ++ ++D E + ++ + + RM+ G NA + ++ + G E
Sbjct: 393 CKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAV 452
Query: 333 ITWEHLARA 341
W+ + +
Sbjct: 453 QVWKEMDKT 461
Score = 38.5 bits (88), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PDTVAY SI L G + + M L + +P+ +PD+V YN +L
Sbjct: 500 PDTVAYSSIIKGLCGIGSMDAALKLYHEM------------LCQEEPKSQPDVVTYNILL 547
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATT 94
+ +K A +L + +G P T
Sbjct: 548 DGLCMQKDISRAVDLLNSMLDRGCDPDVIT 577
>sp|P0C8Q3|PP326_ARATH Pentatricopeptide repeat-containing protein At4g19890
OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1
Length = 701
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 117/253 (46%), Gaps = 13/253 (5%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ-KSYIPNALAYKVLVN 134
A ++ ++ QG PS+ T V+E+ + G F ++ + +P++ +YK++V
Sbjct: 166 AVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVI 225
Query: 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194
+R+GK EA + M +RG + A + LC G A+ K+ + KP
Sbjct: 226 GCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKP 285
Query: 195 LVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253
++++T LI G+I+ A + +M +N PN+ T ++ + G E+A +LF
Sbjct: 286 NLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLF 345
Query: 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK 313
++ + P+++T+ +M+ E + + E+++ RM GL N
Sbjct: 346 LKLVRSDTY-----------KPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVN 394
Query: 314 RHLRMILDASRAG 326
+ +I +AG
Sbjct: 395 TYTTLINGHCKAG 407
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 105/241 (43%), Gaps = 15/241 (6%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
PD Y ++ C R + + A L + Q+G P T L++ + G N +
Sbjct: 215 PDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWY 274
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
FRK + + PN + + L++ L ++G +A +E+M R G + + L LC
Sbjct: 275 FRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCK 334
Query: 174 AGKCEEALMQMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLV 231
G E+A K+ + KP V +YT +I + A +F++MK PN+
Sbjct: 335 RGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVN 394
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T ++ + + G F A +L M ++ +P+IYT+N +D+ +
Sbjct: 395 TYTTLINGHCKAGSFGRAYELMNLMGDEG------------FMPNIYTYNAAIDSLCKKS 442
Query: 292 R 292
R
Sbjct: 443 R 443
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 69/330 (20%), Positives = 134/330 (40%), Gaps = 41/330 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ + + S+ L + G IK+ F++++ M + G W +P++ + A++
Sbjct: 285 PNLINFTSLIDGLCKKGSIKQAFEMLEEM-------VRNG----W----KPNVYTHTALI 329
Query: 65 NACVRRKQWEGAFWV-LQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV-QKSY 122
+ +R E AF + L+ ++ KP+ TY ++ K N F ++ ++
Sbjct: 330 DGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGL 389
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
PN Y L+N + G A + M G + + Y LC + EA
Sbjct: 390 FPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYE 449
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYL 241
++K + V+YT LIQ +I A F +M K ++ NI++ A+
Sbjct: 450 LLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFC 509
Query: 242 EHGLFEEAMKLFQEMA--------EDSNHINREYDKKGLV---------------IPDIY 278
+E+ +LFQ + E + Y K+G + +PD +
Sbjct: 510 RQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSF 569
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGL 308
T+ +++ + D+ +Y+ M+ GL
Sbjct: 570 TYGSLISGLCKKSMVDEACKLYEAMIDRGL 599
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 13/208 (6%)
Query: 140 GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSY 199
G+ +EAV V DM+ +G+ S+ + G E A D++ P SY
Sbjct: 161 GRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSY 220
Query: 200 TGLIQACLDSGNIQNA-AYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258
++ C G IQ A ++ ++ P+ TC +++ A E+GL A+ F++M +
Sbjct: 221 KLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMID 280
Query: 259 DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRM 318
P++ F +++D + + + M+ +G N H +
Sbjct: 281 LGFK------------PNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTAL 328
Query: 319 ILDASRAGKVELLEITWEHLARADRITP 346
I + G E + L R+D P
Sbjct: 329 IDGLCKRGWTEKAFRLFLKLVRSDTYKP 356
>sp|Q9LVD3|PP434_ARATH Pentatricopeptide repeat-containing protein At5g57250,
mitochondrial OS=Arabidopsis thaliana GN=At5g57250 PE=2
SV=2
Length = 971
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 141/320 (44%), Gaps = 46/320 (14%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKF---------------KTGTL--- 46
P+ V Y ++ L Q G + E+ D++ R L + F K G L
Sbjct: 205 PNLVTYTTLVSALCQLGKVDEVRDLV---RRLEDEGFEFDCVFYSNWIHGYFKGGALVDA 261
Query: 47 -----ERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV 101
E + + D+V Y+ +++ + E A +L ++ ++G +P+ TY ++
Sbjct: 262 LMQDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRG 321
Query: 102 MLACGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160
+ GK + F ++ I + Y L++ + R+G + A S + DME+RGI S
Sbjct: 322 LCKMGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPS 381
Query: 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220
Y + LC AG+ EA D++ K V++Y+ L+ + + NI I
Sbjct: 382 ILTYNTVINGLCMAGRVSEA----DEVSKGVVGD-VITYSTLLDSYIKVQNIDAVLEIRR 436
Query: 221 QMKNFCSP-NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279
+ P +LV CNI++KA+L G + EA L++ M E + PD T
Sbjct: 437 RFLEAKIPMDLVMCNILLKAFLLMGAYGEADALYRAMPEMD------------LTPDTAT 484
Query: 280 FNTMLDA-CAAEKRWDDLEL 298
+ TM+ C + + LE+
Sbjct: 485 YATMIKGYCKTGQIEEALEM 504
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 114/267 (42%), Gaps = 43/267 (16%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L P++V Y +++A + + + ++++L+ +G + Y N ++
Sbjct: 203 LVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYS------------NWIH 250
Query: 113 EFFRK-------------VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159
+F+ V+K + ++Y +L++ L +EG +EA+ + M + G+
Sbjct: 251 GYFKGGALVDALMQDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEP 310
Query: 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219
+ Y + R LC GK EEA + ++I V + Y LI GN+ A +
Sbjct: 311 NLITYTAIIRGLCKMGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSML 370
Query: 220 NQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278
M + P+++T N ++ G EA ++ KG V+ D+
Sbjct: 371 GDMEQRGIQPSILTYNTVINGLCMAGRVSEADEV----------------SKG-VVGDVI 413
Query: 279 TFNTMLDACAAEKRWDDLELVYKRMLH 305
T++T+LD+ + D + + +R L
Sbjct: 414 TYSTLLDSYIKVQNIDAVLEIRRRFLE 440
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/230 (19%), Positives = 98/230 (42%), Gaps = 4/230 (1%)
Query: 29 VIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ 88
++D++RSL E + D++ Y ++N + A + K +G
Sbjct: 629 LVDNLRSLDAYLLVVNAGETTLSSM--DVIDYTIIINGLCKEGFLVKALNLCSFAKSRGV 686
Query: 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVS 147
+ TY ++ + G F ++ +P+ + Y +L++ L +EG +A
Sbjct: 687 TLNTITYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEK 746
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
++ M +G+V + +Y + C G+ E+A+ + + P + + +I+
Sbjct: 747 LLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYC 806
Query: 208 DSGNIQNAAYIFNQMKN-FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
G+++ A +F + K+ S + ++K + G EEA L +EM
Sbjct: 807 KKGDMEEALSVFTEFKDKNISADFFGFLFLIKGFCTKGRMEEARGLLREM 856
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 13/181 (7%)
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQM 184
N + Y L+N L ++G EA+ + +E G+V S Y L LC G +A +
Sbjct: 689 NTITYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLL 748
Query: 185 DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCSPNLVTCNIMVKAYLEH 243
D + P ++ Y ++ G ++A + + +M +P+ T + M+K Y +
Sbjct: 749 DSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKK 808
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G EEA+ +F E +D N + D + F ++ + R ++ + + M
Sbjct: 809 GDMEEALSVFTEF-KDKN-----------ISADFFGFLFLIKGFCTKGRMEEARGLLREM 856
Query: 304 L 304
L
Sbjct: 857 L 857
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/176 (19%), Positives = 72/176 (40%), Gaps = 16/176 (9%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
+T+ Y S+ L Q G + E + DS+ ++ L P V Y +++
Sbjct: 689 NTITYNSLINGLCQQGCLVEALRLFDSLENIG---------------LVPSEVTYGILID 733
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEFFRKVQKSYIP 124
+ + A +L + +G P+ Y +++ G+ + + RK+ P
Sbjct: 734 NLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTP 793
Query: 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
+A ++ ++G +EA+S + + + I + L + C+ G+ EEA
Sbjct: 794 DAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADFFGFLFLIKGFCTKGRMEEA 849
Score = 38.9 bits (89), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/108 (19%), Positives = 52/108 (48%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ ++ D+V+ N +L A + + A + + + + P TY +++ G+
Sbjct: 440 EAKIPMDLVMCNILLKAFLLMGAYGEADALYRAMPEMDLTPDTATYATMIKGYCKTGQIE 499
Query: 110 LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI 157
E F +++KS + A+ Y +++ L ++G D A + ++ +G+
Sbjct: 500 EALEMFNELRKSSVSAAVCYNRIIDALCKKGMLDTATEVLIELWEKGL 547
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/248 (20%), Positives = 102/248 (41%), Gaps = 28/248 (11%)
Query: 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP-NALAYKVLVN 134
+ LQ L + G P+ + + + K+N + +F+ ++ I N Y ++
Sbjct: 10 GLFSLQSLLKSGFSPTLNSIDRFLRYLYRLQKFNCILQFYSQLDSKQININHRIYSIVSW 69
Query: 135 TLWREGKTDEA-------VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187
+ ++A +S R ++ S + + R S G L+ D +
Sbjct: 70 AFLNLNRYEDAEKFINIHISKASIFPRTHMLDSLIHGFSITRDDPSKG----LLILRDCL 125
Query: 188 CKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM--KNFCSP--NLVTCNIMVKAYLEH 243
P +++ LI ++ G + NA + M KN P N V C+ ++ + +
Sbjct: 126 RNHGAFPSSLTFCSLIYRFVEKGEMDNAIEVLEMMTNKNVNYPFDNFV-CSAVISGFCKI 184
Query: 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303
G E A+ F E A DS G+++P++ T+ T++ A + D++ + +R+
Sbjct: 185 GKPELALGFF-ESAVDS----------GVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRL 233
Query: 304 LHHGLHFN 311
G F+
Sbjct: 234 EDEGFEFD 241
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 141/325 (43%), Gaps = 34/325 (10%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLER---WDPRLE----PDI 57
PD V + ++ L I E + M +TG LE +D +E P +
Sbjct: 174 PDVVTFNTLLHGLCLEDRISEALALFGYM-------VETGFLEAVALFDQMVEIGLTPVV 226
Query: 58 VVYNAVLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFR 116
+ +N ++N C+ + E A V ++ +G TYG ++ M G
Sbjct: 227 ITFNTLINGLCLEGRVLEAAALV-NKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLS 285
Query: 117 KVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175
K+++++I P+ + Y +++ L ++G +A +M +GI + Y + CS G
Sbjct: 286 KMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFG 345
Query: 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS-PNLVTCN 234
+ +A + + + P V+++ LI A + G + A + ++M + C P+ VT N
Sbjct: 346 RWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYN 405
Query: 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294
M+ + +H F++A +F MA PD+ TFNT++D KR D
Sbjct: 406 SMIYGFCKHNRFDDAKHMFDLMAS----------------PDVVTFNTIIDVYCRAKRVD 449
Query: 295 DLELVYKRMLHHGLHFNAKRHLRMI 319
+ + + + GL N + +I
Sbjct: 450 EGMQLLREISRRGLVANTTTYNTLI 474
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 129/299 (43%), Gaps = 32/299 (10%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
+PD+V +N +L+ + A + + + G + + ++E+ L
Sbjct: 172 FQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLT-------- 223
Query: 113 EFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
P + + L+N L EG+ EA + V M +G+ Y + +C
Sbjct: 224 -----------PVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMC 272
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
G + AL + K+ + KP VV Y+ +I G+ +A Y+F++M + +PN+
Sbjct: 273 KMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVF 332
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N M+ + G + +A +L ++M E RE + PD+ TFN ++ A E
Sbjct: 333 TYNCMIDGFCSFGRWSDAQRLLRDMIE------REIN------PDVLTFNALISASVKEG 380
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALI 350
+ + E + MLH + + + MI + + + + ++ +A D +T +I
Sbjct: 381 KLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTII 439
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 70/382 (18%), Positives = 157/382 (41%), Gaps = 71/382 (18%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+ D V Y +I + + G K +++ M + ++PD+V+Y+A+
Sbjct: 258 HIDVVTYGTIVNGMCKMGDTKSALNLLSKME---------------ETHIKPDVVIYSAI 302
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK-VQKSY 122
++ + A ++ ++ ++G P+ TY +++ + G+++ R +++
Sbjct: 303 IDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREI 362
Query: 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY------------YDLARC 170
P+ L + L++ +EGK EA ++M R I Y +D A+
Sbjct: 363 NPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKH 422
Query: 171 L-------------------CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
+ C A + +E + + +I + +Y LI + N
Sbjct: 423 MFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDN 482
Query: 212 IQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ--EMAE-DSNHINREY 267
+ A +F +M + P+ +TCNI++ + E+ EEA++LF+ +M++ D + +
Sbjct: 483 LNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNI 542
Query: 268 DKKGL--------------------VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307
G+ V PD+ T+N M+ + D +++ +M +G
Sbjct: 543 IIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNG 602
Query: 308 LHFNAKRHLRMILDASRAGKVE 329
+ + +I +AG+++
Sbjct: 603 HEPDNSTYNTLIRGCLKAGEID 624
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/257 (18%), Positives = 96/257 (37%), Gaps = 55/257 (21%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+PDTV Y S+ + + + D M S PD+V +N +
Sbjct: 398 FPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS-------------------PDVVTFNTI 438
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN-------------- 109
++ R K+ + +L+++ ++G + TTY ++ N
Sbjct: 439 IDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 498
Query: 110 ---------LVY------------EFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVS 147
L+Y E F +Q S I + +AY ++++ + + K DEA
Sbjct: 499 CPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWD 558
Query: 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207
+ G+ Y + C +A + K+ ++P +Y LI+ CL
Sbjct: 559 LFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCL 618
Query: 208 DSGNIQNAAYIFNQMKN 224
+G I + + ++M++
Sbjct: 619 KAGEIDKSIELISEMRS 635
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 92/235 (39%), Gaps = 36/235 (15%)
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA 191
++ R + D A+S ME R I + + L +C C K +L K+ K+
Sbjct: 112 VIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLG 171
Query: 192 NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMK 251
+P VV++ L+ I A +F M +E G F EA+
Sbjct: 172 FQPDVVTFNTLLHGLCLEDRISEALALFGYM------------------VETG-FLEAVA 212
Query: 252 LFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311
LF +M E GL P + TFNT+++ E R + + +M+ GLH +
Sbjct: 213 LFDQMVE-----------IGLT-PVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHID 260
Query: 312 AKRHLRMILDASRAGKVE----LLEITWEHLARADRITPPALIKERFCNRLENKD 362
+ ++ + G + LL E + D + A+I +R C + D
Sbjct: 261 VVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAII-DRLCKDGHHSD 314
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 63/143 (44%), Gaps = 17/143 (11%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
DTVAY I + + + E +D+ SLP +EPD+ YN +++
Sbjct: 536 DTVAYNIIIHGMCKGSKVDEAWDL---FCSLPIHG------------VEPDVQTYNVMIS 580
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS-YIP 124
+ A + ++K G +P +TY ++ L G+ + E +++ + +
Sbjct: 581 GFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSG 640
Query: 125 NALAYKVLVNTLWREGKTDEAVS 147
+A K +V L +G+ D++ S
Sbjct: 641 DAFTIK-MVADLITDGRLDKSFS 662
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 131/290 (45%), Gaps = 14/290 (4%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD+ Y V+N +R + A +L+++++ + Y +++ + N
Sbjct: 217 QPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALN 276
Query: 114 FFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F ++ I PN + Y L+ L G+ +A + DM R I + + L
Sbjct: 277 LFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFV 336
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
GK EA D++ K + P + +Y+ LI + A ++F M C PN+V
Sbjct: 337 KEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVV 396
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
T N ++K + + EE M+LF+EM++ +GLV + T+NT++
Sbjct: 397 TYNTLIKGFCKAKRVEEGMELFREMSQ-----------RGLV-GNTVTYNTLIQGLFQAG 444
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341
D + ++K+M+ G+ + + ++ + GK+E + +E+L ++
Sbjct: 445 DCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 494
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 120/262 (45%), Gaps = 20/262 (7%)
Query: 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN-- 109
R+ D+ YN ++N RR Q A VL ++ + G +P T ++ + +
Sbjct: 110 RISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEA 169
Query: 110 --LVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167
LV + F Y PN + + L++ L+ K EAV+ ++ M RG Y +
Sbjct: 170 VALVDQMF---VMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTV 226
Query: 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FC 226
LC G + AL + K+ K + VV YT +I A + N+ +A +F +M N
Sbjct: 227 VNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGI 286
Query: 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
PN+VT N +++ +G + +A +L +M E IN P++ TF+ ++DA
Sbjct: 287 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE--RKIN----------PNVVTFSALIDA 334
Query: 287 CAAEKRWDDLELVYKRMLHHGL 308
E + + E +Y M+ +
Sbjct: 335 FVKEGKLVEAEKLYDEMIKRSI 356
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/338 (21%), Positives = 146/338 (43%), Gaps = 41/338 (12%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ V Y S+ L G + ++ M +ER ++ P++V ++A++
Sbjct: 288 PNVVTYNSLIRCLCNYGRWSDASRLLSDM------------IER---KINPNVVTFSALI 332
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNLVYEFFRKVQ 119
+A V+ + A + ++ ++ P TY G M L K+ ++E +
Sbjct: 333 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH--MFELM--IS 388
Query: 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
K PN + Y L+ + + +E + +M +RG+VG+ Y L + L AG C+
Sbjct: 389 KDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDM 448
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVK 238
A K+ P +++Y+ L+ G ++ A +F + K+ P++ T NIM++
Sbjct: 449 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIE 508
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298
+ G E+ LF ++ KG V P++ + TM+ + ++ +
Sbjct: 509 GMCKAGKVEDGWDLFCSLS-----------LKG-VKPNVIIYTTMISGFCRKGLKEEADA 556
Query: 299 VYKRMLHHGLHFNAKRHLRMI----LDASRAGKVELLE 332
+++ M G N+ + +I D +A EL++
Sbjct: 557 LFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIK 594
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 101/207 (48%), Gaps = 8/207 (3%)
Query: 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEF 114
P++V YN ++ + K+ E + +++ Q+G + TY +++ + G ++ +
Sbjct: 393 PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI 452
Query: 115 FRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173
F+K V P+ + Y +L++ L + GK ++A+ E +++ + Y + +C
Sbjct: 453 FKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCK 512
Query: 174 AGKCEEALMQMDKICKVA---NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPN 229
AGK E+ D C ++ KP V+ YT +I G + A +F +MK + PN
Sbjct: 513 AGKVEDG---WDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPN 569
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEM 256
T N +++A L G + +L +EM
Sbjct: 570 SGTYNTLIRARLRDGDKAASAELIKEM 596
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/222 (18%), Positives = 93/222 (41%), Gaps = 16/222 (7%)
Query: 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV 63
+P+ V Y ++ +A ++E ++ R + ++ T V YN +
Sbjct: 392 FPNVVTYNTLIKGFCKAKRVEEGMELF---REMSQRGLVGNT------------VTYNTL 436
Query: 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI 123
+ + + A + +++ G P TY ++++ + GK F +QKS +
Sbjct: 437 IQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM 496
Query: 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALM 182
P+ Y +++ + + GK ++ + +G+ + +Y + C G EEA
Sbjct: 497 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADA 556
Query: 183 QMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224
++ + P +Y LI+A L G+ +A + +M++
Sbjct: 557 LFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRS 598
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 76/181 (41%), Gaps = 17/181 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD + Y + L + G +++ V + ++ ++EPDI YN ++
Sbjct: 463 PDIITYSILLDGLCKYGKLEKALVVFEYLQK---------------SKMEPDIYTYNIMI 507
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYI 123
+ + E + + L +G KP+ Y ++ G FR++++ +
Sbjct: 508 EGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTL 567
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
PN+ Y L+ R+G + +++M G VG A+ + L G+ E++ ++
Sbjct: 568 PNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINML-HDGRLEKSYLE 626
Query: 184 M 184
M
Sbjct: 627 M 627
>sp|Q9SSR4|PPR77_ARATH Pentatricopeptide repeat-containing protein At1g52620
OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1
Length = 819
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/344 (20%), Positives = 144/344 (41%), Gaps = 55/344 (15%)
Query: 48 RWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK 107
RW P+IV YN ++ + E A+ V ++LK +G P+ T+G ++ G
Sbjct: 231 RWGKGCIPNIVFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGD 290
Query: 108 Y-----------------------NLVYEFFRK-------------VQKSYIPNALAYKV 131
+ N++ +R + P+ Y +
Sbjct: 291 FVASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVATYNI 350
Query: 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA 191
L+N L +EGK + AV +++ ++G++ + Y L + C + + + A + ++ +
Sbjct: 351 LINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERG 410
Query: 192 NKPLVVSYTGLIQACLDSGNIQNAAYI-FNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAM 250
KP +V+Y LI + SG++ +A + + SP+ N+++ + G F A
Sbjct: 411 CKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAK 470
Query: 251 KLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHF 310
LF EM + + ++PD Y + T++D +D+ V+ + G+
Sbjct: 471 LLFSEMLDRN------------ILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKV 518
Query: 311 NAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERF 354
+ H MI R+G ++ E LA +R+ L+ ++F
Sbjct: 519 DVVHHNAMIKGFCRSGMLD------EALACMNRMNEEHLVPDKF 556
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 109/239 (45%), Gaps = 14/239 (5%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PDIV Y +++ V + A + +L +G P A Y ++M + G++
Sbjct: 412 KPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKL 471
Query: 114 FFRK-VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
F + + ++ +P+A Y L++ R G DEA +G+ + + + C
Sbjct: 472 LFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFC 531
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLV 231
+G +EAL M+++ + P +Y+ +I + ++ A IF M KN C PN+V
Sbjct: 532 RSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVV 591
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290
T ++ + G F+ A + F+EM ++P++ T+ T++ + A E
Sbjct: 592 TYTSLINGFCCQGDFKMAEETFKEMQLRD------------LVPNVVTYTTLIRSLAKE 638
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/293 (20%), Positives = 130/293 (44%), Gaps = 14/293 (4%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD+ YN ++N + + E A L + ++G P+ +Y +++ +Y++ +
Sbjct: 342 KPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASK 401
Query: 114 FFRKV-QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172
++ ++ P+ + Y +L++ L G D+AV+ + RG+ AA+Y L LC
Sbjct: 402 LLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLC 461
Query: 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCSPNLV 231
G+ A + ++ P Y LI + SG+ A +F+ ++ ++V
Sbjct: 462 KTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVV 521
Query: 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291
N M+K + G+ +EA+ M E+ ++PD +T++T++D ++
Sbjct: 522 HHNAMIKGFCRSGMLDEALACMNRMNEEH------------LVPDKFTYSTIIDGYVKQQ 569
Query: 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI 344
+++ M + N + +I G ++ E T++ + D +
Sbjct: 570 DMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLV 622
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 98/244 (40%), Gaps = 24/244 (9%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
PD Y + L + G R LP K + L+R + PD VY ++
Sbjct: 448 PDAAIYNMLMSGLCKTG------------RFLPAKLLFSEMLDR---NILPDAYVYATLI 492
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-I 123
+ +R ++ A V ++G K + +++ G + ++ + + +
Sbjct: 493 DGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLV 552
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK---CEEA 180
P+ Y +++ ++ A+ ME+ + Y L C G EE
Sbjct: 553 PDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEET 612
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACL-DSGNIQNAAYIFN-QMKNFCSPNLVTCNIMVK 238
+M V N VV+YT LI++ +S ++ A Y + M N C PN VT N +++
Sbjct: 613 FKEMQLRDLVPN---VVTYTTLIRSLAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQ 669
Query: 239 AYLE 242
+++
Sbjct: 670 GFVK 673
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 77/213 (36%), Gaps = 51/213 (23%)
Query: 50 DPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYN 109
+ L PD Y+ +++ V+++ A + + +++ KP+ TY ++ G +
Sbjct: 548 EEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFK 607
Query: 110 LVYEFFRKVQ-KSYIPNALAYKVLVNTLWREG---------------------------- 140
+ E F+++Q + +PN + Y L+ +L +E
Sbjct: 608 MAEETFKEMQLRDLVPNVVTYTTLIRSLAKESSTLEKAVYYWELMMTNKCVPNEVTFNCL 667
Query: 141 ------KTDEAVSAVED----------------MERRGIVGSAALYYDLARCLCSAGKCE 178
KT V A D M+ G AA Y CLC G +
Sbjct: 668 LQGFVKKTSGKVLAEPDGSNHGQSSLFSEFFHRMKSDGWSDHAAAYNSALVCLCVHGMVK 727
Query: 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211
A M DK+ K P VS+ ++ GN
Sbjct: 728 TACMFQDKMVKKGFSPDPVSFAAILHGFCVVGN 760
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 117/288 (40%), Gaps = 36/288 (12%)
Query: 8 VAYRSIAVTLG-------QAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVY 60
+ +R VTLG Q +E ++DSM P++V+Y
Sbjct: 143 LGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFG---------------FVPNVVIY 187
Query: 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120
N V+N + + A V ++++G + A TY ++ + G++ R + K
Sbjct: 188 NTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVK 247
Query: 121 SYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179
I PN + + L++T +EG EA + ++M RR +V + Y L C G +
Sbjct: 248 RKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGD 307
Query: 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK-NFCSPNLVTCNIMVK 238
A D + P VV+Y LI S +++ +F +M + T N ++
Sbjct: 308 AKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIH 367
Query: 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286
Y + G A K+F M + V PDI T+N +LD
Sbjct: 368 GYCQAGKLNVAQKVFNRMVDCG------------VSPDIVTYNILLDC 403
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 114/260 (43%), Gaps = 14/260 (5%)
Query: 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREG 140
++ + G +PS T G ++ ++ + ++PN + Y ++N L +
Sbjct: 139 KMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNR 198
Query: 141 KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYT 200
+ A+ ME++GI A Y L L ++G+ +A + + K P V+ +T
Sbjct: 199 DLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFT 258
Query: 201 GLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259
LI + GN+ A ++ +M + PN+ T N ++ + HG +A +F M
Sbjct: 259 ALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVS- 317
Query: 260 SNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319
KG PD+ T+NT++ KR +D ++ M + GL +A + +I
Sbjct: 318 ----------KG-CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLI 366
Query: 320 LDASRAGKVELLEITWEHLA 339
+AGK+ + + + +
Sbjct: 367 HGYCQAGKLNVAQKVFNRMV 386
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 37/337 (10%)
Query: 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN 65
D V Y ++ L +G D +R + K+K ++P+++ + A+++
Sbjct: 218 DAVTYNTLISGLSNSGRWT---DAARLLRDMVKRK------------IDPNVIFFTALID 262
Query: 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTY-----GLVMEVMLACGKYNLVYEFFRKVQK 120
V+ A + +++ ++ P+ TY G + L KY F V K
Sbjct: 263 TFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKY----MFDLMVSK 318
Query: 121 SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180
P+ + Y L+ + + ++ + +M +G+VG A Y L C AGK A
Sbjct: 319 GCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVA 378
Query: 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVTCNIMVKA 239
+++ P +V+Y L+ ++G I+ A + + K+ +++T NI+++
Sbjct: 379 QKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQG 438
Query: 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299
+EA LF+ + +KG V PD + TM+ + + + +
Sbjct: 439 LCRTDKLKEAWCLFRSLT-----------RKG-VKPDAIAYITMISGLCRKGLQREADKL 486
Query: 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWE 336
+RM G + + + + D + EL++ E
Sbjct: 487 CRRMKEDGFMPSERIYDETLRDHYTSLSAELIKAAHE 523
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 120/274 (43%), Gaps = 22/274 (8%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSM------------RSLPKKKFKTGTLER---- 48
PD Y S+ L + G +KE +V+D M +L K +E
Sbjct: 328 PDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATEL 387
Query: 49 ----WDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104
+ PD+ +N+++ + A + ++++ +G +P TY ++++ + +
Sbjct: 388 ARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCS 447
Query: 105 CGKYNLVYEFFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163
GK + ++++ S + + Y L++ + KT EA ++ME G+ ++
Sbjct: 448 KGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVT 507
Query: 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM- 222
Y L LC + + E+A MD++ KP +Y L+ G+I+ AA I M
Sbjct: 508 YNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMT 567
Query: 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256
N C P++VT ++ + G E A KL + +
Sbjct: 568 SNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI 601
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 109/258 (42%), Gaps = 15/258 (5%)
Query: 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVY 112
L PD + V+ + +GA + +Q+ + G S + +++ G+
Sbjct: 220 LVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDAL 279
Query: 113 EFFRKV--QKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170
F +++ Q + P+ + LVN L + G A+ ++ M + G Y +
Sbjct: 280 NFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISG 339
Query: 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN-FCSPN 229
LC G+ +EA+ +D++ P V+Y LI ++ A + + + P+
Sbjct: 340 LCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPD 399
Query: 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289
+ T N +++ AM+LF+EM KG PD +T+N ++D+ +
Sbjct: 400 VCTFNSLIQGLCLTRNHRVAMELFEEMR-----------SKGCE-PDEFTYNMLIDSLCS 447
Query: 290 EKRWDDLELVYKRMLHHG 307
+ + D+ + K+M G
Sbjct: 448 KGKLDEALNMLKQMELSG 465
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/340 (20%), Positives = 139/340 (40%), Gaps = 65/340 (19%)
Query: 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVL 64
P+ Y I + LG++G ++ +++ M+S + + T T +++ +
Sbjct: 81 PEPALYEEILLRLGRSGSFDDMKKILEDMKS-SRCEMGTSTF----------LILIESYA 129
Query: 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI- 123
++ + W++ + G KP Y ++ +++ LV K+ I
Sbjct: 130 QFELQDEILSVVDWMIDEF---GLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIK 186
Query: 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183
P+ + VL+ L R + A+ +EDM G+V
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLV------------------------- 221
Query: 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE 242
P ++T ++Q ++ G++ A I QM F CS + V+ N++V + +
Sbjct: 222 ----------PDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCK 271
Query: 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA-CAAEKRWDDLELVYK 301
G E+A+ QEM+ ++ G PD YTFNT+++ C A +E++
Sbjct: 272 EGRVEDALNFIQEMS----------NQDGF-FPDQYTFNTLVNGLCKAGHVKHAIEIM-D 319
Query: 302 RMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLAR 340
ML G + + +I + G+V E +E+ + + R
Sbjct: 320 VMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITR 359
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYE 113
+PD YN++L R + A ++Q + G +P TYG ++ + G+ + +
Sbjct: 537 KPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASK 596
Query: 114 FFRKVQKSYIP-NALAYKVLVNTLWREGKTDEAVSAVEDM-ERRGIVGSAALYYDLARCL 171
R +Q I AY ++ L+R+ KT EA++ +M E+ A Y + R L
Sbjct: 597 LLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGL 656
Query: 172 CSAG 175
C+ G
Sbjct: 657 CNGG 660
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,192,492
Number of Sequences: 539616
Number of extensions: 6895351
Number of successful extensions: 22380
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 211
Number of HSP's that attempted gapping in prelim test: 16777
Number of HSP's gapped (non-prelim): 2351
length of query: 455
length of database: 191,569,459
effective HSP length: 121
effective length of query: 334
effective length of database: 126,275,923
effective search space: 42176158282
effective search space used: 42176158282
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)