Query 048235
Match_columns 455
No_of_seqs 517 out of 2825
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 07:40:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.1E-61 2.4E-66 494.1 39.2 422 5-455 251-731 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2.8E-61 6.1E-66 480.1 38.6 409 2-455 153-568 (697)
3 PLN03218 maturation of RBCL 1; 100.0 2.1E-55 4.6E-60 440.9 46.1 415 4-448 434-877 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 8.1E-54 1.7E-58 429.5 48.6 412 3-427 366-798 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 1.3E-51 2.8E-56 410.9 38.2 410 4-450 84-494 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 6.4E-52 1.4E-56 422.6 36.6 399 4-441 149-612 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.8E-26 8.3E-31 237.7 44.2 398 5-440 463-893 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.3E-26 1.1E-30 236.6 44.6 397 8-441 432-860 (899)
9 PRK11788 tetratricopeptide rep 99.9 8.4E-22 1.8E-26 184.7 37.1 297 14-343 42-349 (389)
10 KOG4626 O-linked N-acetylgluco 99.9 4.3E-22 9.3E-27 179.5 30.5 389 7-436 116-508 (966)
11 PRK11788 tetratricopeptide rep 99.9 3E-20 6.6E-25 174.2 35.9 297 60-374 38-345 (389)
12 PRK11447 cellulose synthase su 99.9 3.8E-19 8.3E-24 186.8 44.9 390 12-442 117-661 (1157)
13 PRK15174 Vi polysaccharide exp 99.9 4E-19 8.7E-24 174.9 42.0 329 10-374 45-379 (656)
14 PRK11447 cellulose synthase su 99.9 4.5E-19 9.8E-24 186.2 43.5 390 14-442 276-735 (1157)
15 TIGR00990 3a0801s09 mitochondr 99.9 4.8E-18 1E-22 167.8 45.8 398 9-441 129-565 (615)
16 KOG4626 O-linked N-acetylgluco 99.9 2.6E-20 5.6E-25 168.2 25.3 413 13-448 54-487 (966)
17 PRK10049 pgaA outer membrane p 99.9 1.4E-18 3.1E-23 174.6 39.3 395 10-442 18-451 (765)
18 TIGR00990 3a0801s09 mitochondr 99.9 3.1E-18 6.8E-23 169.1 41.1 362 59-442 129-532 (615)
19 PRK15174 Vi polysaccharide exp 99.9 4.2E-18 9E-23 167.7 41.3 308 9-351 78-391 (656)
20 PRK14574 hmsH outer membrane p 99.9 3.1E-17 6.7E-22 162.2 40.0 392 14-441 41-507 (822)
21 PRK10049 pgaA outer membrane p 99.8 7.8E-16 1.7E-20 155.0 41.1 378 7-421 49-464 (765)
22 PRK09782 bacteriophage N4 rece 99.8 4.1E-15 8.9E-20 150.3 38.2 97 229-342 476-572 (987)
23 KOG4422 Uncharacterized conser 99.8 2.1E-14 4.6E-19 125.0 33.2 349 4-374 204-588 (625)
24 PRK14574 hmsH outer membrane p 99.7 2.4E-14 5.2E-19 141.9 36.9 375 64-444 41-476 (822)
25 PRK10747 putative protoheme IX 99.7 1.4E-13 3.1E-18 128.1 36.1 282 20-340 97-389 (398)
26 PRK09782 bacteriophage N4 rece 99.7 2.8E-13 6.1E-18 137.2 40.8 344 71-439 356-732 (987)
27 KOG4422 Uncharacterized conser 99.7 9.5E-14 2.1E-18 120.9 30.5 305 51-373 201-548 (625)
28 KOG2002 TPR-containing nuclear 99.7 2E-13 4.3E-18 130.4 35.1 138 293-433 628-765 (1018)
29 TIGR00540 hemY_coli hemY prote 99.7 1.5E-13 3.3E-18 128.6 34.3 289 19-338 96-396 (409)
30 KOG2002 TPR-containing nuclear 99.7 1.2E-12 2.7E-17 125.1 37.2 269 6-305 269-558 (1018)
31 PF13429 TPR_15: Tetratricopep 99.7 4.2E-16 9.1E-21 138.7 13.3 262 12-305 13-276 (280)
32 KOG2076 RNA polymerase III tra 99.7 1.7E-13 3.6E-18 130.0 30.7 328 100-443 147-508 (895)
33 PF13429 TPR_15: Tetratricopep 99.7 1.5E-15 3.2E-20 135.2 13.3 261 62-339 13-275 (280)
34 KOG0495 HAT repeat protein [RN 99.7 9.9E-12 2.1E-16 114.1 37.4 371 58-455 517-889 (913)
35 KOG1126 DNA-binding cell divis 99.6 1.8E-13 3.9E-18 125.9 25.9 288 22-347 334-626 (638)
36 KOG1155 Anaphase-promoting com 99.6 1.3E-12 2.8E-17 115.2 29.2 347 4-371 161-531 (559)
37 KOG2076 RNA polymerase III tra 99.6 9.2E-12 2E-16 118.4 37.0 328 15-374 147-510 (895)
38 KOG0495 HAT repeat protein [RN 99.6 1.8E-11 3.9E-16 112.4 37.5 376 8-425 517-892 (913)
39 PRK10747 putative protoheme IX 99.6 5.5E-12 1.2E-16 117.5 33.4 284 70-374 97-388 (398)
40 COG2956 Predicted N-acetylgluc 99.6 1.2E-11 2.6E-16 104.3 30.7 221 71-305 49-277 (389)
41 COG2956 Predicted N-acetylgluc 99.6 1.3E-11 2.9E-16 104.0 28.7 287 104-412 47-347 (389)
42 TIGR00540 hemY_coli hemY prote 99.6 2.9E-11 6.4E-16 113.3 34.0 294 59-373 84-396 (409)
43 COG3071 HemY Uncharacterized e 99.6 1.2E-10 2.7E-15 101.2 33.9 284 20-339 97-388 (400)
44 KOG1126 DNA-binding cell divis 99.6 2.2E-12 4.8E-17 118.8 23.8 275 72-370 334-614 (638)
45 KOG1155 Anaphase-promoting com 99.5 4.5E-11 9.6E-16 105.6 29.8 294 15-341 235-536 (559)
46 KOG1915 Cell cycle control pro 99.5 6E-10 1.3E-14 98.9 35.2 354 3-392 170-549 (677)
47 PRK12370 invasion protein regu 99.5 4.2E-11 9.2E-16 116.5 30.8 232 7-258 256-501 (553)
48 KOG0547 Translocase of outer m 99.5 7.1E-11 1.5E-15 105.1 28.7 388 10-442 118-561 (606)
49 KOG2003 TPR repeat-containing 99.5 8.3E-11 1.8E-15 103.7 28.8 62 9-87 278-339 (840)
50 TIGR02521 type_IV_pilW type IV 99.5 7E-11 1.5E-15 102.3 27.1 203 54-258 28-231 (234)
51 PF12569 NARP1: NMDA receptor- 99.5 2.9E-10 6.2E-15 107.1 32.2 295 14-342 11-335 (517)
52 TIGR02521 type_IV_pilW type IV 99.5 1.2E-10 2.7E-15 100.7 27.2 197 127-339 32-230 (234)
53 PRK12370 invasion protein regu 99.5 2.2E-10 4.8E-15 111.5 31.5 214 108-340 277-501 (553)
54 KOG4318 Bicoid mRNA stability 99.5 7.1E-12 1.5E-16 118.7 19.7 264 2-327 20-286 (1088)
55 KOG2003 TPR repeat-containing 99.5 3.9E-11 8.4E-16 105.7 23.0 204 209-433 503-709 (840)
56 COG3071 HemY Uncharacterized e 99.5 1E-09 2.2E-14 95.6 31.1 269 7-310 118-394 (400)
57 KOG1129 TPR repeat-containing 99.4 1.7E-11 3.7E-16 103.5 19.1 234 59-311 225-461 (478)
58 KOG1129 TPR repeat-containing 99.4 4E-11 8.8E-16 101.3 19.4 230 10-259 226-458 (478)
59 PF13041 PPR_2: PPR repeat fam 99.4 7.3E-13 1.6E-17 83.1 6.3 50 55-104 1-50 (50)
60 KOG1173 Anaphase-promoting com 99.4 1.4E-09 3E-14 98.8 28.6 295 52-358 239-533 (611)
61 KOG1915 Cell cycle control pro 99.4 6E-08 1.3E-12 86.5 37.5 348 54-425 171-547 (677)
62 KOG0547 Translocase of outer m 99.4 5E-09 1.1E-13 93.5 29.9 59 2-77 143-203 (606)
63 PF12569 NARP1: NMDA receptor- 99.4 4.4E-09 9.5E-14 99.3 31.3 287 64-371 11-329 (517)
64 KOG1174 Anaphase-promoting com 99.3 7.2E-09 1.6E-13 90.7 29.0 274 52-344 227-503 (564)
65 KOG4318 Bicoid mRNA stability 99.3 2E-10 4.3E-15 109.2 20.4 264 51-362 19-286 (1088)
66 PF13041 PPR_2: PPR repeat fam 99.3 8.4E-12 1.8E-16 78.3 6.3 50 228-289 1-50 (50)
67 KOG1173 Anaphase-promoting com 99.3 1.3E-08 2.8E-13 92.6 28.8 287 87-391 239-534 (611)
68 KOG1174 Anaphase-promoting com 99.3 5.6E-08 1.2E-12 85.2 30.9 314 89-425 191-512 (564)
69 KOG1156 N-terminal acetyltrans 99.3 1.2E-07 2.6E-12 87.8 34.5 319 51-375 69-467 (700)
70 KOG1840 Kinesin light chain [C 99.3 5.8E-09 1.3E-13 97.3 26.3 243 91-339 198-477 (508)
71 KOG4162 Predicted calmodulin-b 99.3 8.7E-08 1.9E-12 90.5 33.6 413 4-440 320-776 (799)
72 PRK11189 lipoprotein NlpI; Pro 99.2 3.2E-08 6.9E-13 88.4 29.0 219 20-260 39-266 (296)
73 COG3063 PilF Tfp pilus assembl 99.2 3E-08 6.5E-13 80.3 24.4 200 58-259 36-236 (250)
74 KOG2047 mRNA splicing factor [ 99.2 5.9E-07 1.3E-11 83.3 35.8 369 8-415 103-581 (835)
75 PRK11189 lipoprotein NlpI; Pro 99.2 2.4E-08 5.3E-13 89.2 26.8 232 71-317 40-275 (296)
76 COG3063 PilF Tfp pilus assembl 99.2 4E-08 8.7E-13 79.6 24.6 159 100-259 43-202 (250)
77 cd05804 StaR_like StaR_like; a 99.2 2.7E-07 5.8E-12 85.5 32.7 304 56-374 5-334 (355)
78 KOG1840 Kinesin light chain [C 99.2 4.1E-08 8.8E-13 91.8 26.1 247 52-305 194-478 (508)
79 KOG4162 Predicted calmodulin-b 99.2 1.7E-07 3.7E-12 88.6 29.4 344 81-439 312-739 (799)
80 PF04733 Coatomer_E: Coatomer 99.1 2.4E-09 5.1E-14 94.2 16.1 256 65-346 9-270 (290)
81 cd05804 StaR_like StaR_like; a 99.1 1.2E-06 2.5E-11 81.3 34.2 313 5-342 3-337 (355)
82 KOG2047 mRNA splicing factor [ 99.1 5.6E-06 1.2E-10 77.1 35.7 413 10-441 172-681 (835)
83 KOG1156 N-terminal acetyltrans 99.1 8.4E-07 1.8E-11 82.5 29.8 262 10-304 11-281 (700)
84 KOG0624 dsRNA-activated protei 99.0 5.5E-06 1.2E-10 71.4 31.1 352 12-420 43-429 (504)
85 PF04733 Coatomer_E: Coatomer 99.0 2.4E-08 5.1E-13 88.0 17.1 250 15-306 9-265 (290)
86 KOG1125 TPR repeat-containing 99.0 3.5E-08 7.6E-13 90.2 18.3 220 102-340 295-526 (579)
87 KOG2376 Signal recognition par 99.0 1.1E-05 2.4E-10 74.4 33.7 392 12-432 17-506 (652)
88 KOG3785 Uncharacterized conser 99.0 3.8E-06 8.2E-11 72.6 27.9 157 201-374 290-455 (557)
89 KOG0548 Molecular co-chaperone 99.0 8.1E-07 1.8E-11 80.8 25.0 345 65-438 10-446 (539)
90 KOG2376 Signal recognition par 98.9 1.7E-05 3.6E-10 73.4 32.6 345 3-392 41-501 (652)
91 KOG0624 dsRNA-activated protei 98.9 7.1E-06 1.5E-10 70.7 28.2 310 95-424 41-381 (504)
92 KOG3617 WD40 and TPR repeat-co 98.9 1.7E-06 3.7E-11 82.5 26.5 352 16-438 737-1165(1416)
93 KOG1125 TPR repeat-containing 98.9 4E-07 8.7E-12 83.5 21.7 220 66-305 294-526 (579)
94 KOG4340 Uncharacterized conser 98.9 2E-06 4.4E-11 72.5 23.9 308 57-375 10-338 (459)
95 PF12854 PPR_1: PPR repeat 98.9 1.7E-09 3.6E-14 60.9 4.0 34 1-34 1-34 (34)
96 KOG4340 Uncharacterized conser 98.9 8.1E-07 1.8E-11 74.8 20.3 94 9-120 12-106 (459)
97 PLN02789 farnesyltranstransfer 98.9 4.7E-06 1E-10 74.5 26.4 216 9-243 39-268 (320)
98 KOG3785 Uncharacterized conser 98.9 9.4E-06 2E-10 70.2 26.1 219 14-259 29-248 (557)
99 KOG1070 rRNA processing protei 98.8 4.9E-06 1.1E-10 83.9 27.5 231 54-299 1455-1693(1710)
100 PLN02789 farnesyltranstransfer 98.8 1.8E-05 3.8E-10 70.9 28.8 216 58-289 38-267 (320)
101 KOG1070 rRNA processing protei 98.8 6.3E-06 1.4E-10 83.1 27.4 208 118-342 1450-1664(1710)
102 KOG1914 mRNA cleavage and poly 98.8 0.0001 2.2E-09 67.7 33.9 376 6-416 19-504 (656)
103 KOG3081 Vesicle coat complex C 98.8 1.7E-05 3.6E-10 66.1 25.1 256 64-346 15-276 (299)
104 KOG0548 Molecular co-chaperone 98.8 4.9E-05 1.1E-09 69.6 30.2 339 14-374 9-453 (539)
105 PRK04841 transcriptional regul 98.7 0.0001 2.2E-09 77.4 35.8 306 61-374 413-758 (903)
106 TIGR03302 OM_YfiO outer membra 98.7 3.6E-06 7.8E-11 72.9 20.9 66 125-190 32-99 (235)
107 KOG1128 Uncharacterized conser 98.7 7E-06 1.5E-10 77.6 23.5 215 96-342 402-617 (777)
108 TIGR03302 OM_YfiO outer membra 98.7 3.8E-06 8.2E-11 72.8 20.8 60 166-225 171-232 (235)
109 PF12854 PPR_1: PPR repeat 98.7 2E-08 4.3E-13 56.5 3.9 32 52-83 2-33 (34)
110 KOG1127 TPR repeat-containing 98.7 1.1E-05 2.4E-10 78.8 24.5 100 330-435 801-901 (1238)
111 PRK04841 transcriptional regul 98.7 0.00022 4.8E-09 75.0 36.9 338 66-413 383-761 (903)
112 KOG1128 Uncharacterized conser 98.7 4E-06 8.6E-11 79.2 20.5 221 54-305 395-615 (777)
113 KOG3081 Vesicle coat complex C 98.7 5.2E-05 1.1E-09 63.3 24.5 245 101-372 17-267 (299)
114 PRK15179 Vi polysaccharide bio 98.7 2E-05 4.2E-10 77.9 26.1 143 91-235 85-227 (694)
115 COG5010 TadD Flp pilus assembl 98.7 1E-05 2.2E-10 67.4 20.2 160 96-257 70-229 (257)
116 KOG0985 Vesicle coat protein c 98.7 3.5E-05 7.7E-10 75.5 26.8 207 91-342 1103-1309(1666)
117 PRK10370 formate-dependent nit 98.7 8.5E-06 1.8E-10 67.8 20.3 157 65-235 24-183 (198)
118 PRK10370 formate-dependent nit 98.7 9.6E-06 2.1E-10 67.5 20.0 117 174-305 52-172 (198)
119 COG5010 TadD Flp pilus assembl 98.7 1.5E-05 3.4E-10 66.3 20.5 160 61-223 70-229 (257)
120 PRK14720 transcript cleavage f 98.6 7.6E-05 1.6E-09 74.7 28.6 233 53-322 27-267 (906)
121 PRK14720 transcript cleavage f 98.6 4.2E-05 9E-10 76.5 25.2 232 6-288 30-268 (906)
122 PRK15179 Vi polysaccharide bio 98.6 6.9E-05 1.5E-09 74.1 26.6 189 57-260 28-218 (694)
123 KOG3060 Uncharacterized conser 98.6 0.00012 2.5E-09 60.8 23.2 189 70-260 25-221 (289)
124 KOG3617 WD40 and TPR repeat-co 98.5 6.6E-05 1.4E-09 72.1 23.7 249 45-338 714-993 (1416)
125 COG4783 Putative Zn-dependent 98.5 0.00017 3.8E-09 65.5 25.1 186 51-259 268-454 (484)
126 PRK15359 type III secretion sy 98.5 2.2E-05 4.7E-10 61.8 16.8 94 97-191 29-122 (144)
127 KOG1127 TPR repeat-containing 98.5 0.0001 2.2E-09 72.4 24.2 131 8-154 493-624 (1238)
128 PRK15359 type III secretion sy 98.5 9.6E-06 2.1E-10 63.8 14.2 109 147-260 14-122 (144)
129 KOG0985 Vesicle coat protein c 98.5 0.00026 5.7E-09 69.7 26.0 360 5-440 982-1376(1666)
130 COG4783 Putative Zn-dependent 98.4 0.00019 4.1E-09 65.3 23.0 153 62-234 311-463 (484)
131 KOG3060 Uncharacterized conser 98.4 0.00052 1.1E-08 57.1 23.5 184 106-305 26-219 (289)
132 TIGR02552 LcrH_SycD type III s 98.4 2.3E-05 5E-10 61.2 15.1 56 203-258 24-79 (135)
133 TIGR02552 LcrH_SycD type III s 98.4 2.7E-05 5.8E-10 60.8 15.3 97 162-259 18-114 (135)
134 KOG3616 Selective LIM binding 98.4 0.00022 4.7E-09 67.9 22.5 169 134-338 740-908 (1636)
135 TIGR00756 PPR pentatricopeptid 98.3 1.1E-06 2.4E-11 50.2 4.3 35 58-92 1-35 (35)
136 PF13812 PPR_3: Pentatricopept 98.3 1.2E-06 2.7E-11 49.6 4.4 33 58-90 2-34 (34)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 0.00015 3.3E-09 66.3 19.0 127 161-305 169-296 (395)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.9E-05 8.4E-10 70.1 15.0 127 58-189 170-296 (395)
139 TIGR00756 PPR pentatricopeptid 98.2 3.8E-06 8.1E-11 47.9 4.5 33 279-311 2-34 (35)
140 KOG0550 Molecular chaperone (D 98.2 0.00049 1.1E-08 61.2 18.9 228 204-448 177-444 (486)
141 KOG3616 Selective LIM binding 98.2 0.0011 2.4E-08 63.4 22.4 109 204-336 740-848 (1636)
142 KOG2053 Mitochondrial inherita 98.1 0.01 2.3E-07 58.3 31.0 224 16-260 18-256 (932)
143 PF13812 PPR_3: Pentatricopept 98.1 5.3E-06 1.2E-10 46.9 4.5 33 278-310 2-34 (34)
144 PF09976 TPR_21: Tetratricopep 98.1 0.0004 8.6E-09 54.8 16.2 115 105-221 24-143 (145)
145 PF09976 TPR_21: Tetratricopep 98.1 0.00038 8.3E-09 54.9 16.0 115 209-337 24-143 (145)
146 PF08579 RPM2: Mitochondrial r 98.0 0.00014 3E-09 52.4 10.6 80 10-104 28-116 (120)
147 PF14938 SNAP: Soluble NSF att 98.0 0.00099 2.2E-08 59.2 18.6 216 107-373 30-263 (282)
148 PF10037 MRP-S27: Mitochondria 98.0 8.4E-05 1.8E-09 68.3 11.5 121 89-209 63-186 (429)
149 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.0004 8.6E-09 52.7 13.5 107 9-128 4-112 (119)
150 PF01535 PPR: PPR repeat; Int 98.0 1.2E-05 2.6E-10 44.3 3.5 31 58-88 1-31 (31)
151 cd00189 TPR Tetratricopeptide 97.9 0.00024 5.2E-09 51.0 11.5 22 283-304 40-61 (100)
152 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.0007 1.5E-08 51.3 14.2 101 129-229 5-109 (119)
153 cd00189 TPR Tetratricopeptide 97.9 0.00029 6.3E-09 50.6 11.4 92 166-258 5-96 (100)
154 PF10037 MRP-S27: Mitochondria 97.9 0.00034 7.4E-09 64.4 13.3 123 156-290 61-186 (429)
155 PF05843 Suf: Suppressor of fo 97.9 0.00073 1.6E-08 59.8 15.0 129 163-305 3-135 (280)
156 PF05843 Suf: Suppressor of fo 97.8 0.00047 1E-08 61.0 13.5 130 58-189 2-135 (280)
157 PRK15363 pathogenicity island 97.8 0.0019 4.2E-08 50.3 14.8 87 102-189 45-131 (157)
158 PF08579 RPM2: Mitochondrial r 97.8 0.0006 1.3E-08 49.2 10.8 81 232-324 27-116 (120)
159 PF01535 PPR: PPR repeat; Int 97.8 2.3E-05 5E-10 43.1 3.1 30 279-308 2-31 (31)
160 PRK15363 pathogenicity island 97.8 0.0024 5.2E-08 49.8 14.8 89 203-305 42-131 (157)
161 PRK02603 photosystem I assembl 97.8 0.002 4.4E-08 52.5 15.6 92 55-146 33-126 (172)
162 KOG1914 mRNA cleavage and poly 97.8 0.031 6.8E-07 52.0 28.1 188 142-343 309-503 (656)
163 PLN03088 SGT1, suppressor of 97.8 0.001 2.3E-08 61.0 15.3 87 171-258 12-98 (356)
164 PLN03088 SGT1, suppressor of 97.8 0.001 2.3E-08 61.0 15.3 104 203-322 9-113 (356)
165 PRK02603 photosystem I assembl 97.8 0.0018 3.9E-08 52.8 15.2 114 125-259 34-149 (172)
166 PF12895 Apc3: Anaphase-promot 97.8 7.2E-05 1.6E-09 52.7 5.8 79 71-150 3-82 (84)
167 COG3898 Uncharacterized membra 97.8 0.028 6E-07 50.2 28.0 294 9-343 84-394 (531)
168 PF12895 Apc3: Anaphase-promot 97.7 0.00011 2.3E-09 51.8 6.4 79 140-220 3-82 (84)
169 PRK10866 outer membrane biogen 97.7 0.018 3.8E-07 49.8 21.0 54 102-155 42-98 (243)
170 CHL00033 ycf3 photosystem I as 97.7 0.00099 2.2E-08 54.1 12.7 95 56-150 34-137 (168)
171 KOG2053 Mitochondrial inherita 97.7 0.063 1.4E-06 53.1 35.3 202 10-229 44-259 (932)
172 CHL00033 ycf3 photosystem I as 97.7 0.0014 3E-08 53.3 13.2 93 163-255 37-138 (168)
173 PRK10153 DNA-binding transcrip 97.7 0.0069 1.5E-07 58.3 19.3 144 191-347 332-488 (517)
174 KOG0553 TPR repeat-containing 97.6 0.0011 2.3E-08 56.9 11.5 85 173-258 93-177 (304)
175 PF12688 TPR_5: Tetratrico pep 97.6 0.0066 1.4E-07 45.6 14.5 89 169-257 9-102 (120)
176 PRK10153 DNA-binding transcrip 97.6 0.0067 1.4E-07 58.4 18.2 143 156-315 332-489 (517)
177 PF14559 TPR_19: Tetratricopep 97.6 0.00048 1E-08 46.1 7.1 54 207-260 2-55 (68)
178 PRK10866 outer membrane biogen 97.5 0.049 1.1E-06 47.0 23.8 184 125-339 31-239 (243)
179 KOG1130 Predicted G-alpha GTPa 97.5 0.0016 3.4E-08 58.1 11.3 275 56-342 14-345 (639)
180 KOG0553 TPR repeat-containing 97.5 0.0021 4.5E-08 55.1 11.4 96 134-231 89-184 (304)
181 COG5107 RNA14 Pre-mRNA 3'-end 97.5 0.086 1.9E-06 48.1 26.3 145 278-425 398-543 (660)
182 PF12688 TPR_5: Tetratrico pep 97.4 0.011 2.4E-07 44.4 13.6 89 65-153 9-102 (120)
183 PF13432 TPR_16: Tetratricopep 97.4 0.0011 2.3E-08 44.0 7.0 58 202-259 3-60 (65)
184 PF14559 TPR_19: Tetratricopep 97.4 0.00089 1.9E-08 44.8 6.6 50 105-154 4-53 (68)
185 PF06239 ECSIT: Evolutionarily 97.3 0.0058 1.3E-07 50.1 11.9 88 228-327 45-153 (228)
186 COG4235 Cytochrome c biogenesi 97.3 0.033 7.1E-07 48.2 16.9 109 225-347 151-262 (287)
187 PF13525 YfiO: Outer membrane 97.3 0.063 1.4E-06 45.1 18.7 164 101-296 14-197 (203)
188 KOG2280 Vacuolar assembly/sort 97.3 0.2 4.3E-06 48.8 25.6 313 11-374 441-797 (829)
189 PF04840 Vps16_C: Vps16, C-ter 97.3 0.12 2.7E-06 46.4 28.3 26 8-33 1-26 (319)
190 COG4235 Cytochrome c biogenesi 97.3 0.02 4.4E-07 49.4 15.2 102 158-260 153-257 (287)
191 PF06239 ECSIT: Evolutionarily 97.3 0.0074 1.6E-07 49.5 11.8 106 53-176 43-153 (228)
192 PF14938 SNAP: Soluble NSF att 97.3 0.12 2.6E-06 46.0 20.9 203 99-339 42-264 (282)
193 PF03704 BTAD: Bacterial trans 97.3 0.025 5.4E-07 44.6 14.9 70 94-163 64-138 (146)
194 PF13431 TPR_17: Tetratricopep 97.3 5.2E-05 1.1E-09 42.5 -0.4 31 408-438 3-33 (34)
195 PF13414 TPR_11: TPR repeat; P 97.2 0.0021 4.4E-08 43.2 7.4 63 196-258 3-66 (69)
196 PF07079 DUF1347: Protein of u 97.2 0.16 3.5E-06 46.5 30.8 359 68-446 90-523 (549)
197 KOG0550 Molecular chaperone (D 97.2 0.016 3.4E-07 52.0 14.1 171 275-449 166-353 (486)
198 KOG2796 Uncharacterized conser 97.2 0.097 2.1E-06 44.3 17.7 135 58-193 178-318 (366)
199 KOG1538 Uncharacterized conser 97.2 0.032 7E-07 53.0 16.4 222 4-258 553-801 (1081)
200 KOG2796 Uncharacterized conser 97.2 0.12 2.6E-06 43.7 23.3 146 109-260 166-316 (366)
201 PRK10803 tol-pal system protei 97.1 0.012 2.6E-07 51.2 12.7 103 230-346 143-251 (263)
202 PF13432 TPR_16: Tetratricopep 97.1 0.0026 5.7E-08 42.1 6.8 53 102-154 7-59 (65)
203 PF13525 YfiO: Outer membrane 97.1 0.12 2.7E-06 43.3 20.9 63 130-192 9-73 (203)
204 PF13414 TPR_11: TPR repeat; P 97.1 0.0027 5.8E-08 42.6 6.9 39 102-140 13-51 (69)
205 PF12921 ATP13: Mitochondrial 97.1 0.02 4.3E-07 43.5 12.0 93 229-323 1-99 (126)
206 COG4700 Uncharacterized protei 97.1 0.11 2.4E-06 41.5 18.8 101 159-259 87-189 (251)
207 KOG2041 WD40 repeat protein [G 97.0 0.37 8E-06 46.7 22.9 206 4-256 689-904 (1189)
208 PRK10803 tol-pal system protei 97.0 0.026 5.6E-07 49.2 13.2 100 196-306 143-246 (263)
209 COG4700 Uncharacterized protei 97.0 0.14 3E-06 41.0 18.4 127 193-332 86-213 (251)
210 KOG2041 WD40 repeat protein [G 96.9 0.42 9.2E-06 46.3 21.1 241 54-341 689-952 (1189)
211 PF13371 TPR_9: Tetratricopept 96.9 0.0081 1.8E-07 40.7 7.8 57 204-260 3-59 (73)
212 PF08631 SPO22: Meiosis protei 96.8 0.32 6.9E-06 43.1 26.0 102 197-312 85-192 (278)
213 KOG1258 mRNA processing protei 96.8 0.51 1.1E-05 45.0 33.9 391 9-432 47-489 (577)
214 PF12921 ATP13: Mitochondrial 96.8 0.066 1.4E-06 40.6 12.4 101 6-106 1-102 (126)
215 PF03704 BTAD: Bacterial trans 96.8 0.008 1.7E-07 47.5 7.8 58 60-118 65-122 (146)
216 PF13281 DUF4071: Domain of un 96.7 0.47 1E-05 43.3 20.4 166 92-259 141-334 (374)
217 PRK15331 chaperone protein Sic 96.7 0.097 2.1E-06 41.2 12.7 92 167-259 43-134 (165)
218 PF13371 TPR_9: Tetratricopept 96.6 0.017 3.7E-07 39.1 7.8 53 102-154 5-57 (73)
219 PF10300 DUF3808: Protein of u 96.5 0.35 7.5E-06 46.4 18.3 166 164-339 191-374 (468)
220 KOG1130 Predicted G-alpha GTPa 96.4 0.064 1.4E-06 48.3 11.8 275 8-305 16-343 (639)
221 PF13424 TPR_12: Tetratricopep 96.4 0.0071 1.5E-07 41.7 4.9 69 7-85 5-74 (78)
222 COG5107 RNA14 Pre-mRNA 3'-end 96.4 0.77 1.7E-05 42.2 20.8 149 125-289 396-547 (660)
223 PF13424 TPR_12: Tetratricopep 96.4 0.016 3.5E-07 39.9 6.5 69 230-305 5-74 (78)
224 PF13281 DUF4071: Domain of un 96.4 0.78 1.7E-05 41.9 21.1 99 124-222 139-252 (374)
225 PF04053 Coatomer_WDAD: Coatom 96.3 0.17 3.6E-06 47.9 14.8 159 16-222 270-428 (443)
226 COG1729 Uncharacterized protei 96.3 0.1 2.3E-06 44.6 12.0 108 231-349 143-252 (262)
227 PRK11906 transcriptional regul 96.3 0.54 1.2E-05 43.7 17.4 166 197-377 252-437 (458)
228 PF04840 Vps16_C: Vps16, C-ter 96.2 0.93 2E-05 40.9 31.4 111 232-374 179-289 (319)
229 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.1 2.2E-06 48.2 12.0 65 160-224 74-140 (453)
230 KOG0543 FKBP-type peptidyl-pro 96.2 0.12 2.6E-06 46.7 12.1 124 204-342 216-356 (397)
231 PRK15331 chaperone protein Sic 96.1 0.17 3.7E-06 39.9 11.3 85 104-189 49-133 (165)
232 COG3898 Uncharacterized membra 96.1 1 2.2E-05 40.7 30.3 295 59-377 84-393 (531)
233 COG1729 Uncharacterized protei 95.9 0.18 3.9E-06 43.2 11.5 97 163-260 144-245 (262)
234 PF10300 DUF3808: Protein of u 95.8 0.89 1.9E-05 43.7 17.3 180 75-260 175-377 (468)
235 KOG0543 FKBP-type peptidyl-pro 95.8 0.32 6.9E-06 44.1 13.1 96 196-305 257-354 (397)
236 PF04053 Coatomer_WDAD: Coatom 95.8 0.48 1E-05 44.8 15.0 22 198-219 349-370 (443)
237 PF04097 Nic96: Nup93/Nic96; 95.8 2.2 4.8E-05 42.6 20.3 235 133-378 265-536 (613)
238 PF13512 TPR_18: Tetratricopep 95.7 0.68 1.5E-05 35.7 12.9 79 13-104 16-94 (142)
239 KOG1538 Uncharacterized conser 95.7 2.2 4.7E-05 41.3 19.0 64 144-219 618-681 (1081)
240 smart00299 CLH Clathrin heavy 95.7 0.74 1.6E-05 35.8 15.3 109 131-255 12-121 (140)
241 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 1.8 3.9E-05 40.4 17.5 62 93-154 76-140 (453)
242 KOG3941 Intermediate in Toll s 95.6 0.091 2E-06 44.9 8.6 88 5-107 65-173 (406)
243 KOG4555 TPR repeat-containing 95.6 0.33 7.2E-06 36.4 10.4 89 16-121 52-144 (175)
244 PF13170 DUF4003: Protein of u 95.6 1.3 2.8E-05 39.4 16.3 127 178-318 79-223 (297)
245 PF02259 FAT: FAT domain; Int 95.5 2 4.3E-05 39.6 18.4 66 275-340 144-212 (352)
246 PF13170 DUF4003: Protein of u 95.5 1.7 3.7E-05 38.8 16.6 130 73-204 78-225 (297)
247 PF08631 SPO22: Meiosis protei 95.4 1.8 3.9E-05 38.4 27.0 97 162-260 85-187 (278)
248 KOG2114 Vacuolar assembly/sort 95.3 3.6 7.7E-05 41.2 23.0 176 11-222 338-516 (933)
249 PF09205 DUF1955: Domain of un 95.3 0.9 2E-05 34.3 15.0 85 104-193 68-152 (161)
250 PF09205 DUF1955: Domain of un 95.3 0.9 2E-05 34.3 14.3 64 232-308 88-151 (161)
251 KOG2610 Uncharacterized conser 95.3 0.57 1.2E-05 41.3 12.3 153 68-222 114-273 (491)
252 COG0457 NrfG FOG: TPR repeat [ 95.2 1.6 3.5E-05 36.8 29.9 188 70-258 36-230 (291)
253 KOG1585 Protein required for f 95.2 1.7 3.7E-05 36.7 16.1 192 58-252 32-249 (308)
254 KOG1920 IkappaB kinase complex 95.1 5 0.00011 41.9 20.1 126 14-154 684-820 (1265)
255 KOG1585 Protein required for f 95.1 1.8 3.8E-05 36.6 16.5 209 94-336 33-251 (308)
256 KOG3941 Intermediate in Toll s 95.1 0.52 1.1E-05 40.5 11.3 100 227-338 64-185 (406)
257 PF09613 HrpB1_HrpK: Bacterial 95.1 1.3 2.8E-05 34.9 13.8 19 287-305 54-72 (160)
258 KOG4555 TPR repeat-containing 95.0 0.69 1.5E-05 34.8 10.5 92 101-192 52-146 (175)
259 COG4105 ComL DNA uptake lipopr 95.0 2 4.3E-05 36.7 21.2 57 167-224 173-232 (254)
260 COG0457 NrfG FOG: TPR repeat [ 95.0 1.9 4.1E-05 36.4 30.0 222 106-344 37-268 (291)
261 PF04184 ST7: ST7 protein; In 94.8 2.2 4.7E-05 40.1 15.3 58 316-373 263-321 (539)
262 KOG1941 Acetylcholine receptor 94.8 1.8 3.9E-05 38.8 14.1 167 198-371 85-270 (518)
263 COG4105 ComL DNA uptake lipopr 94.8 2.3 5.1E-05 36.3 24.0 180 136-343 44-235 (254)
264 COG4785 NlpI Lipoprotein NlpI, 94.7 0.18 3.9E-06 41.5 7.4 155 273-441 94-260 (297)
265 KOG2610 Uncharacterized conser 94.7 1.6 3.5E-05 38.7 13.5 114 174-301 116-233 (491)
266 COG3629 DnrI DNA-binding trans 94.6 0.49 1.1E-05 41.2 10.4 54 100-153 161-214 (280)
267 PF13428 TPR_14: Tetratricopep 94.6 0.14 3E-06 30.5 5.2 22 100-121 9-30 (44)
268 KOG2114 Vacuolar assembly/sort 94.6 1.3 2.8E-05 44.1 13.9 118 95-223 337-458 (933)
269 smart00299 CLH Clathrin heavy 94.4 1.8 3.9E-05 33.6 15.9 86 10-118 10-95 (140)
270 PF07035 Mic1: Colon cancer-as 94.4 2.1 4.5E-05 34.3 15.3 99 147-256 15-115 (167)
271 PF10602 RPN7: 26S proteasome 94.4 0.75 1.6E-05 37.5 10.7 62 232-305 38-101 (177)
272 COG3118 Thioredoxin domain-con 94.4 3.2 6.9E-05 36.3 16.5 50 207-256 145-194 (304)
273 PF13428 TPR_14: Tetratricopep 94.3 0.23 5E-06 29.5 5.6 37 199-235 4-40 (44)
274 KOG1920 IkappaB kinase complex 94.3 8.3 0.00018 40.4 24.0 133 203-374 915-1053(1265)
275 PF13512 TPR_18: Tetratricopep 94.0 2.2 4.8E-05 33.0 12.0 72 102-173 20-94 (142)
276 PF10602 RPN7: 26S proteasome 93.9 1.1 2.5E-05 36.4 10.7 101 277-377 36-143 (177)
277 COG3118 Thioredoxin domain-con 93.8 4.2 9.2E-05 35.5 17.4 145 102-249 144-291 (304)
278 cd00923 Cyt_c_Oxidase_Va Cytoc 93.8 0.49 1.1E-05 33.4 7.0 62 73-134 23-84 (103)
279 PF04184 ST7: ST7 protein; In 93.7 6.3 0.00014 37.2 20.4 187 59-260 171-376 (539)
280 PF07079 DUF1347: Protein of u 93.4 6.6 0.00014 36.6 31.0 339 18-375 90-523 (549)
281 COG1747 Uncharacterized N-term 93.3 7.6 0.00016 36.8 20.0 166 193-377 63-235 (711)
282 COG3629 DnrI DNA-binding trans 93.3 1.4 3.1E-05 38.4 10.7 84 196-286 153-236 (280)
283 KOG1941 Acetylcholine receptor 93.2 5.3 0.00011 36.0 13.9 228 17-257 16-273 (518)
284 KOG1464 COP9 signalosome, subu 93.2 5 0.00011 34.5 21.3 299 51-371 20-360 (440)
285 PF02284 COX5A: Cytochrome c o 92.9 1.7 3.7E-05 31.1 8.6 60 75-134 28-87 (108)
286 KOG0890 Protein kinase of the 92.7 22 0.00047 40.6 27.7 152 13-185 1389-1542(2382)
287 COG4455 ImpE Protein of avirul 92.6 5.3 0.00011 33.3 12.3 136 279-419 3-140 (273)
288 cd00923 Cyt_c_Oxidase_Va Cytoc 92.5 1.4 3E-05 31.2 7.7 62 176-237 22-83 (103)
289 COG4785 NlpI Lipoprotein NlpI, 92.5 5.5 0.00012 33.2 18.5 181 106-308 79-268 (297)
290 KOG4570 Uncharacterized conser 92.4 0.83 1.8E-05 40.0 7.9 103 51-155 58-164 (418)
291 PF13431 TPR_17: Tetratricopep 92.1 0.22 4.8E-06 27.7 2.9 31 116-146 3-33 (34)
292 TIGR02561 HrpB1_HrpK type III 92.1 2.6 5.7E-05 32.7 9.5 67 277-347 7-79 (153)
293 PF13176 TPR_7: Tetratricopept 91.9 0.46 9.9E-06 26.7 4.2 26 59-84 1-26 (36)
294 TIGR02561 HrpB1_HrpK type III 91.9 4.9 0.00011 31.3 12.4 52 209-260 23-74 (153)
295 PF13176 TPR_7: Tetratricopept 91.7 0.46 1E-05 26.7 4.0 27 232-258 1-27 (36)
296 PF02284 COX5A: Cytochrome c o 91.7 1.4 3E-05 31.5 7.0 62 177-238 26-87 (108)
297 PRK15180 Vi polysaccharide bio 91.6 9.8 0.00021 35.7 14.1 125 104-230 301-425 (831)
298 PF00637 Clathrin: Region in C 91.5 0.035 7.5E-07 43.6 -1.1 126 236-396 13-138 (143)
299 KOG2280 Vacuolar assembly/sort 91.4 17 0.00036 36.3 28.9 324 85-440 425-792 (829)
300 PF09613 HrpB1_HrpK: Bacterial 90.7 7 0.00015 30.9 13.6 70 276-347 6-79 (160)
301 PRK11906 transcriptional regul 90.3 16 0.00035 34.4 19.8 162 58-221 252-432 (458)
302 PF00515 TPR_1: Tetratricopept 90.3 0.89 1.9E-05 24.9 4.3 28 278-305 2-29 (34)
303 PF00515 TPR_1: Tetratricopept 89.6 0.99 2.1E-05 24.7 4.2 30 231-260 2-31 (34)
304 PF00637 Clathrin: Region in C 89.3 0.19 4.1E-06 39.4 1.4 82 98-186 13-95 (143)
305 KOG1550 Extracellular protein 89.2 24 0.00053 34.9 21.5 183 108-308 228-428 (552)
306 KOG1586 Protein required for f 89.1 13 0.00028 31.5 20.0 76 282-357 159-240 (288)
307 COG4649 Uncharacterized protei 88.4 12 0.00025 30.1 14.9 21 172-192 69-89 (221)
308 PF07719 TPR_2: Tetratricopept 88.3 1.5 3.2E-05 23.9 4.3 27 279-305 3-29 (34)
309 KOG4570 Uncharacterized conser 87.9 7.9 0.00017 34.2 10.0 102 87-190 59-164 (418)
310 PF08424 NRDE-2: NRDE-2, neces 87.4 22 0.00048 32.3 18.2 122 213-348 48-190 (321)
311 KOG2396 HAT (Half-A-TPR) repea 86.7 29 0.00064 33.0 29.4 370 5-418 103-565 (568)
312 PF11207 DUF2989: Protein of u 86.4 13 0.00028 30.7 10.1 77 173-250 118-198 (203)
313 KOG0276 Vesicle coat complex C 86.4 14 0.00031 35.8 11.5 97 207-335 648-744 (794)
314 PRK15180 Vi polysaccharide bio 86.3 14 0.00029 34.8 11.1 52 208-259 335-386 (831)
315 PF13374 TPR_10: Tetratricopep 86.1 2.1 4.6E-05 24.6 4.4 29 231-259 3-31 (42)
316 PF07035 Mic1: Colon cancer-as 85.8 17 0.00036 29.2 15.6 24 51-74 23-46 (167)
317 PF13374 TPR_10: Tetratricopep 85.7 2.4 5.2E-05 24.3 4.4 26 128-153 4-29 (42)
318 KOG1258 mRNA processing protei 85.5 38 0.00082 33.0 33.7 349 15-397 87-489 (577)
319 PF07719 TPR_2: Tetratricopept 85.2 3.4 7.3E-05 22.4 4.7 30 314-343 3-32 (34)
320 KOG4077 Cytochrome c oxidase, 84.2 16 0.00034 27.5 9.9 60 75-134 67-126 (149)
321 COG4455 ImpE Protein of avirul 84.2 9.4 0.0002 31.9 8.2 15 167-181 41-55 (273)
322 COG5159 RPN6 26S proteasome re 84.1 28 0.00061 30.4 15.6 197 63-259 9-235 (421)
323 PRK09687 putative lyase; Provi 84.0 30 0.00065 30.7 27.8 234 5-288 35-278 (280)
324 PF13929 mRNA_stabil: mRNA sta 83.8 30 0.00065 30.5 15.3 62 159-220 200-262 (292)
325 COG4649 Uncharacterized protei 83.7 21 0.00046 28.7 16.9 134 91-225 58-196 (221)
326 PF13174 TPR_6: Tetratricopept 83.5 2.5 5.4E-05 22.7 3.6 25 318-342 6-30 (33)
327 PF13181 TPR_8: Tetratricopept 83.3 2.8 6.1E-05 22.8 3.8 27 279-305 3-29 (34)
328 PF13929 mRNA_stabil: mRNA sta 83.2 32 0.00069 30.3 15.7 123 129-254 134-262 (292)
329 COG3947 Response regulator con 81.5 37 0.0008 29.9 16.4 51 167-218 285-335 (361)
330 KOG4234 TPR repeat-containing 81.5 22 0.00048 29.4 9.2 89 102-191 105-198 (271)
331 PF06552 TOM20_plant: Plant sp 81.2 20 0.00043 29.1 8.9 74 246-341 51-136 (186)
332 KOG1464 COP9 signalosome, subu 80.8 37 0.0008 29.5 19.0 170 167-338 71-258 (440)
333 COG3947 Response regulator con 80.0 9.5 0.00021 33.4 7.2 58 129-187 282-339 (361)
334 KOG4648 Uncharacterized conser 79.7 14 0.00031 33.1 8.3 89 169-258 105-193 (536)
335 KOG4077 Cytochrome c oxidase, 79.3 18 0.0004 27.2 7.5 60 178-237 66-125 (149)
336 PF13762 MNE1: Mitochondrial s 79.3 25 0.00054 27.4 8.7 89 9-107 41-130 (145)
337 PF13181 TPR_8: Tetratricopept 79.3 6.3 0.00014 21.3 4.3 28 232-259 3-30 (34)
338 KOG4648 Uncharacterized conser 78.7 14 0.00031 33.1 8.0 90 133-224 104-193 (536)
339 PF13174 TPR_6: Tetratricopept 78.2 4.5 9.8E-05 21.6 3.4 26 235-260 5-30 (33)
340 TIGR02508 type_III_yscG type I 78.1 15 0.00032 26.4 6.4 51 358-415 50-100 (115)
341 PF07163 Pex26: Pex26 protein; 78.1 36 0.00079 29.8 10.0 87 133-219 90-181 (309)
342 KOG0276 Vesicle coat complex C 78.0 55 0.0012 32.1 12.0 26 126-151 666-691 (794)
343 PF11207 DUF2989: Protein of u 77.6 40 0.00086 28.0 14.8 75 141-216 121-198 (203)
344 PF10345 Cohesin_load: Cohesin 77.6 84 0.0018 31.7 34.2 319 7-347 59-488 (608)
345 PF07575 Nucleopor_Nup85: Nup8 77.3 82 0.0018 31.4 19.3 27 7-34 149-175 (566)
346 KOG1550 Extracellular protein 77.0 82 0.0018 31.3 26.5 150 67-224 259-425 (552)
347 KOG4234 TPR repeat-containing 76.9 41 0.0009 27.9 10.1 89 172-260 106-198 (271)
348 TIGR03504 FimV_Cterm FimV C-te 76.6 7.2 0.00016 23.1 4.0 23 132-154 5-27 (44)
349 PF07721 TPR_4: Tetratricopept 76.4 4.1 9E-05 20.7 2.7 23 9-31 3-25 (26)
350 COG2976 Uncharacterized protei 75.3 45 0.00098 27.5 14.5 89 237-342 96-189 (207)
351 PF02259 FAT: FAT domain; Int 75.0 68 0.0015 29.4 22.0 53 64-120 5-57 (352)
352 KOG2066 Vacuolar assembly/sort 74.5 1E+02 0.0023 31.3 27.3 101 14-138 363-467 (846)
353 PRK09687 putative lyase; Provi 74.2 63 0.0014 28.7 27.7 220 91-343 36-265 (280)
354 COG1747 Uncharacterized N-term 74.1 86 0.0019 30.2 25.7 180 123-321 63-248 (711)
355 PF07163 Pex26: Pex26 protein; 73.7 51 0.0011 28.9 9.8 88 166-253 88-181 (309)
356 TIGR03504 FimV_Cterm FimV C-te 73.5 11 0.00023 22.4 4.2 21 319-339 6-26 (44)
357 PF14689 SPOB_a: Sensor_kinase 73.2 11 0.00023 24.4 4.6 48 292-341 5-52 (62)
358 KOG2659 LisH motif-containing 72.6 59 0.0013 27.6 12.7 99 273-373 22-129 (228)
359 PF13762 MNE1: Mitochondrial s 71.6 46 0.001 26.0 11.7 109 53-173 10-127 (145)
360 cd08819 CARD_MDA5_2 Caspase ac 70.0 33 0.00072 23.9 6.5 64 77-145 22-85 (88)
361 PRK11619 lytic murein transgly 69.8 1.3E+02 0.0029 30.5 27.4 248 64-339 106-373 (644)
362 PRK10941 hypothetical protein; 69.7 79 0.0017 27.9 11.0 69 279-349 183-252 (269)
363 KOG4507 Uncharacterized conser 69.4 20 0.00043 34.7 7.1 103 138-241 619-721 (886)
364 COG2976 Uncharacterized protei 68.3 67 0.0015 26.5 13.3 90 134-225 97-188 (207)
365 PF11846 DUF3366: Domain of un 68.2 34 0.00073 28.3 7.8 55 289-343 120-175 (193)
366 PF04097 Nic96: Nup93/Nic96; 67.5 1.4E+02 0.0031 30.1 14.8 42 98-139 117-158 (613)
367 PF10345 Cohesin_load: Cohesin 67.5 1.4E+02 0.0031 30.0 35.0 193 54-256 27-251 (608)
368 KOG4642 Chaperone-dependent E3 67.4 80 0.0017 27.1 11.1 83 174-258 23-106 (284)
369 KOG1308 Hsp70-interacting prot 67.2 4.9 0.00011 35.9 2.6 83 355-440 122-204 (377)
370 PF10579 Rapsyn_N: Rapsyn N-te 67.2 25 0.00055 24.0 5.4 51 237-300 14-66 (80)
371 KOG4521 Nuclear pore complex, 66.8 1.4E+02 0.0031 32.0 12.7 148 205-368 929-1123(1480)
372 PRK11619 lytic murein transgly 65.8 1.6E+02 0.0035 29.9 28.4 332 58-409 35-372 (644)
373 smart00028 TPR Tetratricopepti 64.8 13 0.00029 18.7 3.5 28 232-259 3-30 (34)
374 PF11848 DUF3368: Domain of un 63.6 31 0.00066 20.9 5.0 35 66-100 11-45 (48)
375 PF10579 Rapsyn_N: Rapsyn N-te 63.4 30 0.00065 23.6 5.2 46 289-334 18-65 (80)
376 KOG4507 Uncharacterized conser 63.2 47 0.001 32.4 8.2 103 103-207 618-721 (886)
377 COG0735 Fur Fe2+/Zn2+ uptake r 63.2 44 0.00096 26.2 7.1 62 148-210 8-69 (145)
378 PF08424 NRDE-2: NRDE-2, neces 63.1 1.2E+02 0.0026 27.6 18.3 99 54-153 16-129 (321)
379 PF09477 Type_III_YscG: Bacter 62.7 58 0.0013 23.8 9.0 81 174-260 19-99 (116)
380 PF11846 DUF3366: Domain of un 62.3 53 0.0012 27.1 7.9 52 208-259 120-173 (193)
381 COG0735 Fur Fe2+/Zn2+ uptake r 62.3 50 0.0011 25.9 7.2 63 298-361 7-69 (145)
382 PF07575 Nucleopor_Nup85: Nup8 61.3 1.1E+02 0.0023 30.6 11.0 18 243-260 508-525 (566)
383 PRK10941 hypothetical protein; 61.0 1.2E+02 0.0026 26.8 10.8 115 46-172 139-262 (269)
384 PHA02875 ankyrin repeat protei 60.8 1.5E+02 0.0033 28.0 12.5 210 66-312 8-230 (413)
385 KOG0686 COP9 signalosome, subu 60.8 1.5E+02 0.0032 27.8 12.9 61 198-258 152-215 (466)
386 KOG1498 26S proteasome regulat 60.4 1.4E+02 0.0031 27.6 17.3 192 70-261 25-243 (439)
387 PF14689 SPOB_a: Sensor_kinase 60.3 33 0.00072 22.1 4.9 46 246-305 6-51 (62)
388 PRK10564 maltose regulon perip 59.9 20 0.00043 31.7 4.9 46 54-99 253-299 (303)
389 KOG2471 TPR repeat-containing 59.7 1E+02 0.0023 29.5 9.6 107 135-242 249-381 (696)
390 cd00280 TRFH Telomeric Repeat 58.6 1E+02 0.0022 25.3 8.2 24 236-259 117-140 (200)
391 TIGR02508 type_III_yscG type I 58.5 68 0.0015 23.2 8.5 78 177-260 21-98 (115)
392 PF11848 DUF3368: Domain of un 58.3 39 0.00085 20.4 5.2 34 287-320 12-45 (48)
393 PF04910 Tcf25: Transcriptiona 58.0 1.6E+02 0.0035 27.4 17.3 65 276-340 99-167 (360)
394 KOG3364 Membrane protein invol 57.7 86 0.0019 24.2 7.6 72 275-347 30-106 (149)
395 KOG2396 HAT (Half-A-TPR) repea 57.5 1.9E+02 0.004 28.0 31.9 78 52-130 100-178 (568)
396 COG5108 RPO41 Mitochondrial DN 57.4 85 0.0018 31.3 8.9 75 12-102 33-113 (1117)
397 smart00386 HAT HAT (Half-A-TPR 56.1 28 0.00061 18.1 4.1 29 210-238 1-29 (33)
398 COG2909 MalT ATP-dependent tra 56.0 2.6E+02 0.0056 29.2 28.0 228 136-372 425-684 (894)
399 KOG4567 GTPase-activating prot 55.5 89 0.0019 27.9 8.0 42 78-119 264-305 (370)
400 KOG0687 26S proteasome regulat 55.3 1.6E+02 0.0035 26.6 15.2 103 231-341 105-210 (393)
401 PF14669 Asp_Glu_race_2: Putat 55.0 1.2E+02 0.0026 25.0 13.9 149 154-302 1-206 (233)
402 PRK12356 glutaminase; Reviewed 54.6 1.5E+02 0.0032 26.8 9.5 20 53-72 94-113 (319)
403 PRK10564 maltose regulon perip 54.2 40 0.00086 29.9 5.8 44 273-316 252-296 (303)
404 PF04910 Tcf25: Transcriptiona 54.1 1.9E+02 0.004 26.9 17.8 100 229-342 99-223 (360)
405 cd00280 TRFH Telomeric Repeat 54.1 1.2E+02 0.0026 24.9 7.9 50 293-342 85-141 (200)
406 PF04762 IKI3: IKI3 family; I 53.9 2.1E+02 0.0046 30.6 12.1 31 125-155 811-843 (928)
407 PF06552 TOM20_plant: Plant sp 53.9 1.2E+02 0.0026 24.7 11.9 62 227-308 66-138 (186)
408 KOG0890 Protein kinase of the 53.5 4.5E+02 0.0097 31.1 27.4 150 62-220 1388-1542(2382)
409 PF09454 Vps23_core: Vps23 cor 53.1 36 0.00077 22.3 4.2 51 53-104 4-54 (65)
410 KOG0292 Vesicle coat complex C 52.8 1.4E+02 0.003 31.1 9.7 152 174-377 606-757 (1202)
411 PRK13184 pknD serine/threonine 51.5 3.3E+02 0.0072 29.1 25.6 315 13-367 481-860 (932)
412 PF11817 Foie-gras_1: Foie gra 51.1 1E+02 0.0022 26.8 8.0 59 280-338 181-244 (247)
413 PF11768 DUF3312: Protein of u 51.0 2.5E+02 0.0054 27.5 11.9 23 12-34 413-435 (545)
414 KOG2908 26S proteasome regulat 50.8 2E+02 0.0043 26.2 10.8 60 130-189 79-143 (380)
415 PF12862 Apc5: Anaphase-promot 50.8 87 0.0019 22.2 7.0 21 134-154 49-69 (94)
416 COG3107 LppC Putative lipoprot 50.6 2.5E+02 0.0054 27.4 15.5 188 215-423 47-242 (604)
417 KOG0686 COP9 signalosome, subu 50.3 2.2E+02 0.0048 26.7 13.5 155 232-400 152-321 (466)
418 PF06957 COPI_C: Coatomer (COP 50.2 2.2E+02 0.0048 27.0 10.3 40 305-344 291-332 (422)
419 PF11817 Foie-gras_1: Foie gra 49.6 1E+02 0.0022 26.7 7.9 61 197-257 179-245 (247)
420 KOG4642 Chaperone-dependent E3 49.0 1.8E+02 0.0038 25.2 11.4 117 206-337 20-142 (284)
421 KOG2422 Uncharacterized conser 48.2 2.8E+02 0.0061 27.3 18.6 217 210-434 252-499 (665)
422 PF09454 Vps23_core: Vps23 cor 48.2 40 0.00086 22.1 3.8 52 273-325 4-55 (65)
423 PF11663 Toxin_YhaV: Toxin wit 48.1 21 0.00046 27.2 2.8 32 289-322 107-138 (140)
424 PF10475 DUF2450: Protein of u 48.0 2.1E+02 0.0045 25.6 9.8 151 59-219 62-220 (291)
425 PF11838 ERAP1_C: ERAP1-like C 47.8 2.1E+02 0.0046 25.8 18.5 108 142-254 146-261 (324)
426 cd08819 CARD_MDA5_2 Caspase ac 47.4 97 0.0021 21.7 7.1 14 175-188 50-63 (88)
427 KOG3807 Predicted membrane pro 46.8 2E+02 0.0042 26.1 8.8 110 70-191 229-341 (556)
428 PRK09857 putative transposase; 46.3 2E+02 0.0043 25.8 9.2 66 129-195 209-274 (292)
429 COG5108 RPO41 Mitochondrial DN 45.9 1.2E+02 0.0025 30.4 7.9 90 166-257 33-130 (1117)
430 PF10366 Vps39_1: Vacuolar sor 45.1 1.2E+02 0.0027 22.2 7.3 26 164-189 42-67 (108)
431 KOG0128 RNA-binding protein SA 45.1 3.8E+02 0.0081 27.8 29.9 99 54-154 110-218 (881)
432 KOG4567 GTPase-activating prot 44.3 1.2E+02 0.0027 27.1 7.1 77 297-375 263-346 (370)
433 COG2909 MalT ATP-dependent tra 44.1 4E+02 0.0087 27.9 30.5 223 102-337 425-684 (894)
434 cd07153 Fur_like Ferric uptake 42.5 71 0.0015 23.6 5.1 48 283-330 6-53 (116)
435 PF11663 Toxin_YhaV: Toxin wit 42.0 31 0.00068 26.3 2.9 32 137-170 106-137 (140)
436 smart00638 LPD_N Lipoprotein N 42.0 3.7E+02 0.008 26.9 27.4 62 91-156 309-370 (574)
437 PF02184 HAT: HAT (Half-A-TPR) 41.6 61 0.0013 17.7 3.3 26 245-284 2-27 (32)
438 PF01475 FUR: Ferric uptake re 41.4 59 0.0013 24.3 4.5 47 282-328 12-58 (120)
439 PRK11639 zinc uptake transcrip 41.2 1.9E+02 0.004 23.4 7.6 59 303-362 17-75 (169)
440 PF13934 ELYS: Nuclear pore co 41.1 2.3E+02 0.005 24.2 15.5 120 164-308 79-200 (226)
441 KOG0376 Serine-threonine phosp 40.8 82 0.0018 30.0 6.0 99 135-237 13-112 (476)
442 PF14853 Fis1_TPR_C: Fis1 C-te 40.6 90 0.002 19.4 6.1 28 318-345 7-34 (53)
443 PF10255 Paf67: RNA polymerase 40.4 1.6E+02 0.0035 27.7 7.8 59 129-187 125-190 (404)
444 PHA02875 ankyrin repeat protei 40.2 3.2E+02 0.007 25.7 12.3 177 63-260 38-225 (413)
445 PRK11639 zinc uptake transcrip 39.8 1.8E+02 0.0038 23.5 7.3 19 177-195 41-59 (169)
446 COG2178 Predicted RNA-binding 39.5 2.2E+02 0.0048 23.6 9.5 93 282-374 34-148 (204)
447 KOG2471 TPR repeat-containing 39.4 3.7E+02 0.0079 26.1 14.8 278 69-357 29-379 (696)
448 PRK12357 glutaminase; Reviewed 39.4 3E+02 0.0064 25.0 9.2 12 54-65 99-110 (326)
449 PF13934 ELYS: Nuclear pore co 38.9 2.5E+02 0.0054 24.0 16.1 55 318-375 114-168 (226)
450 COG5187 RPN7 26S proteasome re 38.8 2.9E+02 0.0062 24.7 15.5 113 124-238 113-235 (412)
451 PF09670 Cas_Cas02710: CRISPR- 37.8 3.5E+02 0.0075 25.4 12.6 57 133-190 138-198 (379)
452 COG5159 RPN6 26S proteasome re 37.8 2.9E+02 0.0064 24.5 15.3 201 134-342 11-236 (421)
453 KOG0551 Hsp90 co-chaperone CNS 37.2 69 0.0015 28.9 4.7 76 358-434 92-169 (390)
454 PF12862 Apc5: Anaphase-promot 36.9 1.5E+02 0.0033 20.9 7.6 61 287-347 8-76 (94)
455 PF09986 DUF2225: Uncharacteri 36.6 2.6E+02 0.0057 23.6 11.7 69 279-347 120-200 (214)
456 KOG2063 Vacuolar assembly/sort 36.4 5.5E+02 0.012 27.2 19.1 39 170-208 600-638 (877)
457 PF03745 DUF309: Domain of unk 36.4 1.2E+02 0.0026 19.6 5.7 17 173-189 11-27 (62)
458 PF11123 DNA_Packaging_2: DNA 36.2 1.2E+02 0.0027 20.3 4.5 31 212-242 13-43 (82)
459 KOG1586 Protein required for f 36.0 2.9E+02 0.0062 23.9 21.8 84 210-305 128-223 (288)
460 PF14561 TPR_20: Tetratricopep 35.9 1.6E+02 0.0034 20.8 8.3 34 123-156 19-52 (90)
461 cd07153 Fur_like Ferric uptake 35.8 1.1E+02 0.0024 22.6 5.2 43 133-175 7-49 (116)
462 KOG0376 Serine-threonine phosp 35.7 92 0.002 29.6 5.5 106 168-289 11-117 (476)
463 TIGR03581 EF_0839 conserved hy 35.7 1.9E+02 0.0041 24.4 6.6 90 22-119 136-235 (236)
464 KOG2297 Predicted translation 35.4 3.3E+02 0.0072 24.5 16.5 21 196-216 321-341 (412)
465 PF09477 Type_III_YscG: Bacter 34.7 1.9E+02 0.004 21.4 9.0 20 172-191 80-99 (116)
466 PF12926 MOZART2: Mitotic-spin 34.3 1.6E+02 0.0036 20.6 7.7 65 55-121 8-72 (88)
467 KOG2297 Predicted translation 33.7 3.6E+02 0.0078 24.3 16.4 68 174-250 268-341 (412)
468 KOG0991 Replication factor C, 33.5 3.2E+02 0.0069 23.6 12.9 38 79-118 181-218 (333)
469 PRK14963 DNA polymerase III su 33.4 4.8E+02 0.01 25.7 10.3 36 275-311 240-275 (504)
470 KOG3677 RNA polymerase I-assoc 33.2 4E+02 0.0087 25.1 8.8 60 58-118 236-298 (525)
471 PRK13342 recombination factor 33.1 4.3E+02 0.0094 25.1 19.4 18 243-260 243-260 (413)
472 PF07678 A2M_comp: A-macroglob 33.0 3.3E+02 0.0071 23.6 8.8 68 275-342 130-222 (246)
473 PF01475 FUR: Ferric uptake re 32.8 1E+02 0.0022 23.0 4.6 42 131-172 12-53 (120)
474 KOG4814 Uncharacterized conser 32.7 4.6E+02 0.01 26.4 9.6 91 168-258 361-456 (872)
475 KOG0292 Vesicle coat complex C 32.5 5.5E+02 0.012 27.1 10.3 100 167-304 626-725 (1202)
476 PRK09462 fur ferric uptake reg 32.1 2.5E+02 0.0054 22.0 7.3 38 292-329 32-69 (148)
477 PRK13342 recombination factor 32.1 4.5E+02 0.0097 25.0 18.5 21 175-195 244-264 (413)
478 COG0790 FOG: TPR repeat, SEL1 31.9 3.6E+02 0.0079 23.8 20.0 176 12-211 82-287 (292)
479 KOG1839 Uncharacterized protei 31.8 7.4E+02 0.016 27.4 12.6 159 136-299 942-1121(1236)
480 KOG0403 Neoplastic transformat 31.6 4.7E+02 0.01 25.0 16.4 233 59-327 347-589 (645)
481 PF09868 DUF2095: Uncharacteri 31.6 2.2E+02 0.0047 21.1 5.7 25 132-156 67-91 (128)
482 PF08311 Mad3_BUB1_I: Mad3/BUB 31.4 2.3E+02 0.0051 21.5 10.6 46 247-303 80-125 (126)
483 PF10255 Paf67: RNA polymerase 31.3 1.3E+02 0.0028 28.3 5.8 69 9-85 124-192 (404)
484 PF10607 CLTH: CTLH/CRA C-term 31.0 1.7E+02 0.0036 22.7 5.8 51 288-338 12-66 (145)
485 KOG1308 Hsp70-interacting prot 30.7 72 0.0016 28.9 3.8 119 208-342 126-245 (377)
486 PF10475 DUF2450: Protein of u 30.6 4E+02 0.0086 23.8 10.1 115 60-186 101-222 (291)
487 KOG3677 RNA polymerase I-assoc 29.8 4.1E+02 0.0089 25.1 8.3 60 128-188 237-299 (525)
488 COG5187 RPN7 26S proteasome re 29.6 4.1E+02 0.0089 23.7 15.1 101 230-340 115-220 (412)
489 KOG4521 Nuclear pore complex, 29.4 7.9E+02 0.017 27.0 15.3 124 196-338 983-1129(1480)
490 PF07064 RIC1: RIC1; InterPro 29.2 4E+02 0.0086 23.4 17.0 27 127-153 83-109 (258)
491 PF09670 Cas_Cas02710: CRISPR- 29.1 4.9E+02 0.011 24.4 12.9 54 66-120 140-197 (379)
492 PF09090 MIF4G_like_2: MIF4G l 28.5 4E+02 0.0086 23.2 10.2 119 228-354 9-134 (253)
493 PF02847 MA3: MA3 domain; Int 27.9 2.4E+02 0.0052 20.5 6.6 18 101-118 11-28 (113)
494 PF10366 Vps39_1: Vacuolar sor 27.7 2.5E+02 0.0054 20.6 7.1 28 127-154 40-67 (108)
495 PRK09857 putative transposase; 27.7 4.5E+02 0.0098 23.6 9.2 62 199-260 209-270 (292)
496 PF15297 CKAP2_C: Cytoskeleton 27.4 4.9E+02 0.011 23.9 9.2 65 212-288 119-186 (353)
497 PRK14700 recombination factor 27.0 4.7E+02 0.01 23.5 12.6 118 107-224 104-229 (300)
498 smart00804 TAP_C C-terminal do 26.9 78 0.0017 20.6 2.6 24 325-348 38-61 (63)
499 KOG2034 Vacuolar sorting prote 26.6 7.8E+02 0.017 26.0 23.9 49 15-84 366-416 (911)
500 PF09868 DUF2095: Uncharacteri 25.8 2.8E+02 0.0061 20.6 5.5 36 98-133 67-102 (128)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-61 Score=494.13 Aligned_cols=422 Identities=15% Similarity=0.186 Sum_probs=355.7
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048235 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLK 84 (455)
Q Consensus 5 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 84 (455)
||..+||++|.+|++.|++++|+++|++|.. .+..||..+|+.+|.+|++.|+++.|.+++..|.
T Consensus 251 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~---------------~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~ 315 (857)
T PLN03077 251 RDCISWNAMISGYFENGECLEGLELFFTMRE---------------LSVDPDLMTITSVISACELLGDERLGREMHGYVV 315 (857)
T ss_pred CCcchhHHHHHHHHhCCCHHHHHHHHHHHHH---------------cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 4444444444444444444444444444443 5677788888888888888888888888888888
Q ss_pred HcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 048235 85 QQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164 (455)
Q Consensus 85 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 164 (455)
+.|+.||..+|++++.+|+++|+++.|.++|++|.. +|..+|+++|.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 316 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392 (857)
T ss_pred HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence 888888888888888888888888888888888864 68889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 048235 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHG 244 (455)
Q Consensus 165 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 244 (455)
+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g 469 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNN 469 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999999875 78889999999999999
Q ss_pred ChhHHHHHHHHHHhcccccchh------------------------------------------------------hccC
Q 048235 245 LFEEAMKLFQEMAEDSNHINRE------------------------------------------------------YDKK 270 (455)
Q Consensus 245 ~~~~a~~~~~~m~~~~~~~~~~------------------------------------------------------~~~~ 270 (455)
+.++|..+|++|.. +..|+.. ..+
T Consensus 470 ~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f- 547 (857)
T PLN03077 470 RCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF- 547 (857)
T ss_pred CHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH-
Confidence 99999999999875 3444430 001
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHh-
Q 048235 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPAL- 349 (455)
Q Consensus 271 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~- 349 (455)
....||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+..+..|+..
T Consensus 548 ~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~ 627 (857)
T PLN03077 548 NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627 (857)
T ss_pred HhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence 1127899999999999999999999999999999999999999999999999999999999999999997666666643
Q ss_pred HHHHHHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcc-hHHHHHHHhccccccccCCCchhHHHHH
Q 048235 350 IKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQD-TLIQLLHEASSSLTTRNGSPYPVLQNLI 428 (455)
Q Consensus 350 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~l~~~~ 428 (455)
+..++..+.+.|++++|.+++++|+..|+. .+|..|+. +|+.+++ +.++.+.+.+.+++|+++..|..|+++|
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~----~~~~aLl~--ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y 701 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKMPITPDP----AVWGALLN--ACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLY 701 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHCCCCCCH----HHHHHHHH--HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence 333334445999999999999999977754 99999999 5777777 8888899999999999999999999999
Q ss_pred HhHHhhhhccCC---cccccCCCCcccCCC
Q 048235 429 SSCKDFLRTQSP---APVVNLTGTPLYSSI 455 (455)
Q Consensus 429 ~~~~~~~~a~~~---~~~~~~~~~~~~~~~ 455 (455)
+..|+|++|..+ |++.+++|+||+|||
T Consensus 702 a~~g~~~~a~~vr~~M~~~g~~k~~g~s~i 731 (857)
T PLN03077 702 ADAGKWDEVARVRKTMRENGLTVDPGCSWV 731 (857)
T ss_pred HHCCChHHHHHHHHHHHHcCCCCCCCccEE
Confidence 999999988877 789999999999997
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.8e-61 Score=480.08 Aligned_cols=409 Identities=15% Similarity=0.204 Sum_probs=369.0
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 048235 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQ 81 (455)
Q Consensus 2 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 81 (455)
|+.||..+||.++.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|+++|+
T Consensus 153 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-------------------~~~~~t~n~li~~~~~~g~~~~A~~lf~ 213 (697)
T PLN03081 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-------------------ERNLASWGTIIGGLVDAGNYREAFALFR 213 (697)
T ss_pred CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-------------------CCCeeeHHHHHHHHHHCcCHHHHHHHHH
Confidence 566777777777777777777777777777775 6899999999999999999999999999
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048235 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160 (455)
Q Consensus 82 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 160 (455)
+|.+.|+.|+..||+.++.+|++.|..+.+.+++..+.+.+. +|..+|++|+.+|++.|++++|.++|++|. .+|
T Consensus 214 ~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~ 289 (697)
T PLN03081 214 EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKT 289 (697)
T ss_pred HHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 999999999999999999999999999999999999988776 899999999999999999999999999995 468
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHH
Q 048235 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239 (455)
Q Consensus 161 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~ 239 (455)
..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+. .+||..+|++||.+
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~ 369 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL 369 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999765 89999999999999
Q ss_pred HHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048235 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319 (455)
Q Consensus 240 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 319 (455)
|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++
T Consensus 370 y~k~G~~~~A~~vf~~m~~----------------~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 433 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMPR----------------KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433 (697)
T ss_pred HHHCCCHHHHHHHHHhCCC----------------CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 9999999999999999853 789999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCChHh-HHHHHHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCC
Q 048235 320 LDASRAGKVELLEITWEHLARADRITPPAL-IKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFG 398 (455)
Q Consensus 320 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 398 (455)
.+|.+.|.+++|.++|+.|.+..+..|+.. +..++..+.+.|++++|.+++++++..|+. .+|..++.+ |..+
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~----~~~~~Ll~a--~~~~ 507 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTV----NMWAALLTA--CRIH 507 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCH----HHHHHHHHH--HHHc
Confidence 999999999999999999998766666643 333444445999999999999999987754 899999995 5555
Q ss_pred cc-hHHHHHHHhccccccccCCCchhHHHHHHhHHhhhhccCC---cccccCCCCcccCCC
Q 048235 399 QD-TLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQSP---APVVNLTGTPLYSSI 455 (455)
Q Consensus 399 ~~-~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~---~~~~~~~~~~~~~~~ 455 (455)
++ +.++.+.+.+.+++|++...|..|+++|++.|+|++|..+ |++.|++|.||+|||
T Consensus 508 g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i 568 (697)
T PLN03081 508 KNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWI 568 (697)
T ss_pred CCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEE
Confidence 55 6666667777789999999999999999999999999888 778999999999996
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.1e-55 Score=440.88 Aligned_cols=415 Identities=13% Similarity=0.195 Sum_probs=318.8
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048235 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQL 83 (455)
Q Consensus 4 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 83 (455)
.||..+|+.+|.+|++.|+++.|.++|+.|.+ .|..||..+|+.||.+|++.|++++|.++|++|
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~---------------~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM 498 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQE---------------AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH---------------cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 38899999999999999999999999999987 677888888888888888888888888888888
Q ss_pred HHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCC
Q 048235 84 KQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMER--RGIVGS 160 (455)
Q Consensus 84 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~ 160 (455)
.+.|+.||..||+.+|.+|++.|++++|.++|+.|...+. ||..+|+.||.+|++.|++++|.++|++|.. .|+.||
T Consensus 499 ~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD 578 (1060)
T PLN03218 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD 578 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 8888888888888888888888888888888888877665 8888888888888888888888888888876 567888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHH
Q 048235 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKA 239 (455)
Q Consensus 161 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~ 239 (455)
..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+. +.||..+|+.++.+
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a 658 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888655 78888888888888
Q ss_pred HHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048235 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319 (455)
Q Consensus 240 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 319 (455)
|++.|++++|.++|++|.+.| ..||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|
T Consensus 659 ~~k~G~~eeA~~l~~eM~k~G------------~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI 726 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARKQG------------IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALI 726 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcC------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 888888888888888888887 77888888888888888888888888888888878888888888888
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCC-
Q 048235 320 LDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFG- 398 (455)
Q Consensus 320 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 398 (455)
.+|++.|++++|.++|++|...+..|....+..++..+.+.|++++|.+++..|.... ...+..++..++.. |...
T Consensus 727 ~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G-i~pd~~tynsLIgl--c~~~y 803 (1060)
T PLN03218 727 TALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG-IKPNLVMCRCITGL--CLRRF 803 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH--HHHHH
Confidence 8888888888888888888777766665555555555567788888888777765332 11133555555442 2110
Q ss_pred ------------------------cchHHHHHHHhccccccccCCCchhHHHHHHhHHhhhhccCCcccccCCC
Q 048235 399 ------------------------QDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQSPAPVVNLTG 448 (455)
Q Consensus 399 ------------------------~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (455)
.+++...+.++..+..+.|...+..+...+...+.+..+.......+.++
T Consensus 804 ~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 804 EKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred HHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence 12455556666665555555555555555555555555554444444443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.1e-54 Score=429.54 Aligned_cols=412 Identities=15% Similarity=0.237 Sum_probs=368.4
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccc-----------------cccccccccCCCCCCCHhHHHHHHH
Q 048235 3 SYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKK-----------------FKTGTLERWDPRLEPDIVVYNAVLN 65 (455)
Q Consensus 3 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~li~ 65 (455)
-.++...|..++..|++.|++++|+++|+.|...+... .-..+.++|.....||..+|+.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45667788888888889999999999999987643110 0111344555556699999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcCChHH
Q 048235 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDE 144 (455)
Q Consensus 66 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~ 144 (455)
+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|...+. ||..+|+.||.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 9999999999999999999999999999999999999999999999999999998776 899999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048235 145 AVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK--VANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222 (455)
Q Consensus 145 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 222 (455)
|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986 678999999999999999999999999999999
Q ss_pred Hhc-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048235 223 KNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301 (455)
Q Consensus 223 ~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 301 (455)
.+. ++|+..+|+.+|.+|++.|++++|.++|++|.+.| +.||..+|+.+|.+|++.|++++|.++|+
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G------------v~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG------------VKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 876 89999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCCCCccc
Q 048235 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEF 381 (455)
Q Consensus 302 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 381 (455)
+|.+.|+.||..+|+.+|.+|+++|++++|.++|++|.+.+..|....+..++..+.+.|++++|.+++++|.... ...
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G-i~P 752 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG-LCP 752 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCC
Confidence 9999999999999999999999999999999999999988776666666667777779999999999999886432 223
Q ss_pred cHHHHHHHHhhhcccCCcchHHHHHHHhccccccccCCCchhHHHH
Q 048235 382 SRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQNL 427 (455)
Q Consensus 382 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 427 (455)
+...|..++.++...+..+++.+.+.++.......|...|..|..+
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 5589999999877777777888888888876666666677777554
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-51 Score=410.87 Aligned_cols=410 Identities=15% Similarity=0.181 Sum_probs=372.0
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048235 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQL 83 (455)
Q Consensus 4 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 83 (455)
.++..+|+.+|..|.+.|++++|+++|+.|... .+..||..+|+.++.+|++.++++.+.+++..|
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~--------------~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m 149 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAG--------------CPFTLPASTYDALVEACIALKSIRCVKAVYWHV 149 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhc--------------CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 456679999999999999999999999999862 346799999999999999999999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 048235 84 KQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163 (455)
Q Consensus 84 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 163 (455)
.+.|+.||..+|+.++.+|++.|+++.|.++|++|.. ||..+|++++.+|++.|++++|+++|++|.+.|+.|+..+
T Consensus 150 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t 226 (697)
T PLN03081 150 ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT 226 (697)
T ss_pred HHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhh
Confidence 9999999999999999999999999999999999965 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 048235 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243 (455)
Q Consensus 164 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 243 (455)
|+.++.+|+..|..+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|+.|.. +|..+||+||.+|++.
T Consensus 227 ~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~ 303 (697)
T PLN03081 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAWNSMLAGYALH 303 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999975 8999999999999999
Q ss_pred CChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048235 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDAS 323 (455)
Q Consensus 244 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 323 (455)
|++++|.++|++|.+.| +.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|+
T Consensus 304 g~~~eA~~lf~~M~~~g------------~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~ 371 (697)
T PLN03081 304 GYSEEALCLYYEMRDSG------------VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371 (697)
T ss_pred CCHHHHHHHHHHHHHcC------------CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH
Confidence 99999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcchHH
Q 048235 324 RAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLI 403 (455)
Q Consensus 324 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 403 (455)
++|++++|.++|++|.+.+. ..+..++..+.+.|+.++|++++++|.... ..++..+|..++.++...+..+++.
T Consensus 372 k~G~~~~A~~vf~~m~~~d~----~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~~~~a~ 446 (697)
T PLN03081 372 KWGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEG-VAPNHVTFLAVLSACRYSGLSEQGW 446 (697)
T ss_pred HCCCHHHHHHHHHhCCCCCe----eeHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCcHHHHH
Confidence 99999999999999976433 235566667779999999999999986432 2235689999999777777777888
Q ss_pred HHHHHhccc-cccccCCCchhHHHHHHhHHhhhhccCCcccccCCCCc
Q 048235 404 QLLHEASSS-LTTRNGSPYPVLQNLISSCKDFLRTQSPAPVVNLTGTP 450 (455)
Q Consensus 404 ~~~~~~~~~-~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (455)
+.+.++... ....+...|..+...|.+.|+.++|..+++..+.+|+.
T Consensus 447 ~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~ 494 (697)
T PLN03081 447 EIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTV 494 (697)
T ss_pred HHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCH
Confidence 888777652 23345678999999999999999999998877766543
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.4e-52 Score=422.58 Aligned_cols=399 Identities=16% Similarity=0.168 Sum_probs=327.2
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048235 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQL 83 (455)
Q Consensus 4 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 83 (455)
.||+.+||++|.+|++.|++++|+++|++|.. .|..||..||+.++.+|+..+++..+.+++..|
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~---------------~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~ 213 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW---------------AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV 213 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH---------------cCCCCChhHHHHHHHHhCCccchhhHHHHHHHH
Confidence 46677777777777777777777777777765 567777777777777777777777777777777
Q ss_pred HHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 048235 84 KQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163 (455)
Q Consensus 84 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 163 (455)
.+.|+.||..++++++.+|+++|+++.|.++|+.|.. +|..+||++|.+|++.|++++|+++|++|.+.|+.||..|
T Consensus 214 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~t 290 (857)
T PLN03077 214 VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290 (857)
T ss_pred HHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence 7777777888888899999999999999999999964 6889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 048235 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243 (455)
Q Consensus 164 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 243 (455)
|+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. ||..+|+++|.+|++.
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKN 367 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999975 8999999999999999
Q ss_pred CChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048235 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDAS 323 (455)
Q Consensus 244 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 323 (455)
|++++|+++|++|.+.| +.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+++.++.+|.
T Consensus 368 g~~~~A~~lf~~M~~~g------------~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 368 GLPDKALETYALMEQDN------------VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred CCHHHHHHHHHHHHHhC------------CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 99999999999999999 788888888888888888888888888888888888888888888888888
Q ss_pred hcCChHHHHHHHHHHhhcCCCCChHhH------------------------------HH---------------------
Q 048235 324 RAGKVELLEITWEHLARADRITPPALI------------------------------KE--------------------- 352 (455)
Q Consensus 324 ~~g~~~~a~~~~~~~~~~~~~~~~~~~------------------------------~~--------------------- 352 (455)
++|++++|.++|++|.+.+....+.++ ..
T Consensus 436 k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 436 KCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred HcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 888888888888887654432211110 00
Q ss_pred --------------HHHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHhccccccccC
Q 048235 353 --------------RFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNG 418 (455)
Q Consensus 353 --------------~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 418 (455)
++..+.+.|+.++|.++++.+ .+ +...|+.++..+...|..+++.+.+.++.......|.
T Consensus 516 ~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~----d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EK----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 011112445555555555554 22 3377888888877888888888888887765555666
Q ss_pred CCchhHHHHHHhHHhhhhccCCc
Q 048235 419 SPYPVLQNLISSCKDFLRTQSPA 441 (455)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~ 441 (455)
.+|..+...|...|+++++..+.
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHH
Confidence 77777777788888877776663
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=3.8e-26 Score=237.70 Aligned_cols=398 Identities=10% Similarity=0.040 Sum_probs=203.2
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048235 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLK 84 (455)
Q Consensus 5 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 84 (455)
++..+|..+...+...|++++|.+.|+++... .+.+...+..+...+...|++++|.+.|+++.
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSI----------------EPDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh----------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45667888888888888888888888887742 13334444555555555555555555555555
Q ss_pred HcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 048235 85 QQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164 (455)
Q Consensus 85 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 164 (455)
+.+.. +..++..+...+.+.|+.++|..+++++....+.+...+..+...|...|++++|..+++.+.+.. +.+..+|
T Consensus 527 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 604 (899)
T TIGR02917 527 TIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAW 604 (899)
T ss_pred HhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence 44322 344444444555555555555555555444444444444444444445555555555554444332 2233444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC---------------------------------CCcHHHHHHHHHHHHhcCC
Q 048235 165 YDLARCLCSAGKCEEALMQMDKICKVAN---------------------------------KPLVVSYTGLIQACLDSGN 211 (455)
Q Consensus 165 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~---------------------------------~~~~~~~~~li~~~~~~~~ 211 (455)
..+..++...|++++|...++.+.+... +.+..++..+...+...|+
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence 4444444444455555444444444321 1134444444444445555
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcC
Q 048235 212 IQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291 (455)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 291 (455)
+++|..+++.+.+..+.+...+..+...+...|++++|.+.|+++...+ |+..++..+...+.+.|
T Consensus 685 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 685 TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--------------PSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--------------CCchHHHHHHHHHHHCC
Confidence 5555555554444444444444445555555555555555555554432 33344445555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhh
Q 048235 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLV 371 (455)
Q Consensus 292 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 371 (455)
++++|.+.++++.+.. +.+...+..+...|...|++++|...|+++.+..+..+. ....+.....+.|+ .+|+..++
T Consensus 751 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 751 NTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAV-VLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhcCc-HHHHHHHH
Confidence 5555555555555532 123444555555555556666666666665555433221 12222222234455 55555555
Q ss_pred hcCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHhccccccccCCCchhHHHHHHhHHhhhhccCC
Q 048235 372 SHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQSP 440 (455)
Q Consensus 372 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 440 (455)
++....+. +...|..+...+...++.+++.+.+.+.+. .+|.++.++..++.+|.+.|++++|...
T Consensus 828 ~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 828 KALKLAPN--IPAILDTLGWLLVEKGEADRALPLLRKAVN-IAPEAAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred HHHhhCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 44321111 123444444444455555556555555554 6666666666666666666666666554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=5.3e-26 Score=236.64 Aligned_cols=397 Identities=13% Similarity=0.067 Sum_probs=283.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048235 8 VAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG 87 (455)
Q Consensus 8 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 87 (455)
.....++..+.+.|++++|+++++.+.. ..+++..+|+.+...+...|++++|.+.|+++.+..
T Consensus 432 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 495 (899)
T TIGR02917 432 RADLLLILSYLRSGQFDKALAAAKKLEK----------------KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495 (899)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH----------------hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 4556778889999999999999999984 346678899999999999999999999999999865
Q ss_pred CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048235 88 QKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167 (455)
Q Consensus 88 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 167 (455)
.. +...+..+...+...|++++|.+.|+++....+.+..++..+...+.+.|++++|..+++++.+.+ +.+...+..+
T Consensus 496 ~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 573 (899)
T TIGR02917 496 PD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALAL 573 (899)
T ss_pred CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHH
Confidence 33 567778888999999999999999999998888889999999999999999999999999998875 4456677889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChh
Q 048235 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFE 247 (455)
Q Consensus 168 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 247 (455)
+..+...|++++|..+++.+.+.. +.+..+|..+..++...|++++|...|+.+.+..+.+...+..+..++...|+++
T Consensus 574 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 652 (899)
T TIGR02917 574 AQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYA 652 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Confidence 999999999999999999998765 4478899999999999999999999999998766777888889999999999999
Q ss_pred HHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------------------
Q 048235 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL------------------- 308 (455)
Q Consensus 248 ~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------------------- 308 (455)
+|..+|+++.+.. +.+..++..+...+...|++++|.++++.+.+.+.
T Consensus 653 ~A~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 653 KAITSLKRALELK-------------PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHHHHHhcC-------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCH
Confidence 9999999988754 12344555555555555555555555555544321
Q ss_pred -------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCC
Q 048235 309 -------------HFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPV 375 (455)
Q Consensus 309 -------------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 375 (455)
.|+..++..+...+.+.|++++|.+.++.+.+..+..+. ....+...+...|++++|.+.++++..
T Consensus 720 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 720 PAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAV-LRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 122233444444445555555555555555444333221 111122222345666666665555442
Q ss_pred CCCccccHHHHHHHHhhhcccCCcchHHHHHHHhccccccccCCCchhHHHHHHhHHhhhhccCCc
Q 048235 376 SGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQSPA 441 (455)
Q Consensus 376 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 441 (455)
..+. +...+..+...+...+. .++...+.+.+. ..|+++..+..++.+|...|++++|....
T Consensus 799 ~~p~--~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 860 (899)
T TIGR02917 799 KAPD--NAVVLNNLAWLYLELKD-PRALEYAEKALK-LAPNIPAILDTLGWLLVEKGEADRALPLL 860 (899)
T ss_pred hCCC--CHHHHHHHHHHHHhcCc-HHHHHHHHHHHh-hCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2211 22445554444344444 344444443333 56666666666666777777766666553
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=8.4e-22 Score=184.74 Aligned_cols=297 Identities=14% Similarity=0.109 Sum_probs=219.7
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--
Q 048235 14 AVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPS-- 91 (455)
Q Consensus 14 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-- 91 (455)
...+...|++++|+..|+++.+. .+.+..++..+...+...|++++|..+++.+...+..++
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 105 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKV----------------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ 105 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhc----------------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH
Confidence 34456678888888888888752 244566788888888888888888888888877532221
Q ss_pred -HhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHH
Q 048235 92 -ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS----AALYYD 166 (455)
Q Consensus 92 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~ 166 (455)
...+..+...|.+.|+++.|..+|+++....+.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..
T Consensus 106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 106 RLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 245677778888888888888888888776666777888888888888888888888888877653332 123455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhcCC
Q 048235 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPN-LVTCNIMVKAYLEHGL 245 (455)
Q Consensus 167 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~ 245 (455)
+...+...|++++|...++++.+... .+...+..+...+.+.|++++|.+.|+++....+.+ ..+++.++.+|...|+
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 67777788888888888888877642 245677777888888888888888888886543322 3567778888888888
Q ss_pred hhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-
Q 048235 246 FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASR- 324 (455)
Q Consensus 246 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~- 324 (455)
+++|...++++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+..
T Consensus 265 ~~~A~~~l~~~~~~~--------------p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~ 328 (389)
T PRK11788 265 EAEGLEFLRRALEEY--------------PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHHHHhC--------------CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhc
Confidence 888888888887743 66666677788888888888888888888773 5777777777766543
Q ss_pred --cCChHHHHHHHHHHhhcCC
Q 048235 325 --AGKVELLEITWEHLARADR 343 (455)
Q Consensus 325 --~g~~~~a~~~~~~~~~~~~ 343 (455)
.|+.+++..+++.+.+...
T Consensus 329 ~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred cCCccchhHHHHHHHHHHHHH
Confidence 4578888888888876553
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=4.3e-22 Score=179.51 Aligned_cols=389 Identities=15% Similarity=0.114 Sum_probs=327.9
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048235 7 TVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ 86 (455)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 86 (455)
..+|..+...+-..|++++|+..++.+.+. .+..+..|..+..++...|+.+.|.+.|.+..+.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel----------------~p~fida~inla~al~~~~~~~~a~~~~~~alql 179 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL----------------KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL 179 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc----------------CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc
Confidence 458899999999999999999999999853 2456889999999999999999999999999875
Q ss_pred CCCCCHhhHH-HHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHH
Q 048235 87 GQKPSATTYG-LVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS-AALY 164 (455)
Q Consensus 87 ~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~ 164 (455)
.|+..... .+-..+...|++++|...+.+.....+.-..+|+.|...+...|+...|+..|++....+ |+ ...|
T Consensus 180 --nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAY 255 (966)
T KOG4626|consen 180 --NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAY 255 (966)
T ss_pred --CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHH
Confidence 45444333 334445678999999999999988877778899999999999999999999999998875 33 5678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 048235 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHG 244 (455)
Q Consensus 165 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 244 (455)
..|...|...+.++.|...+.+.....+. ...++..+...|-..|.++.|+..+++..+..+.-...|+.|..++...|
T Consensus 256 iNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G 334 (966)
T KOG4626|consen 256 INLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKG 334 (966)
T ss_pred hhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcc
Confidence 88999999999999999999988776422 57778888888999999999999999998876777889999999999999
Q ss_pred ChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 048235 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN-AKRHLRMILDA 322 (455)
Q Consensus 245 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~ 322 (455)
++.+|++.|.+.+... | .....+.|...|...|.+++|..+|....+ +.|+ ...++.|...|
T Consensus 335 ~V~ea~~cYnkaL~l~--------------p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 335 SVTEAVDCYNKALRLC--------------PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIY 398 (966)
T ss_pred chHHHHHHHHHHHHhC--------------CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHH
Confidence 9999999999999854 6 467888999999999999999999999988 5566 35788888999
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcchH
Q 048235 323 SRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTL 402 (455)
Q Consensus 323 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 402 (455)
-.+|++++|...+++.++..+...++. ..+...+-+.|+...|++.+..+....+. -+.....|.+++-..|+..++
T Consensus 399 kqqgnl~~Ai~~YkealrI~P~fAda~-~NmGnt~ke~g~v~~A~q~y~rAI~~nPt--~AeAhsNLasi~kDsGni~~A 475 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEALRIKPTFADAL-SNMGNTYKEMGDVSAAIQCYTRAIQINPT--FAEAHSNLASIYKDSGNIPEA 475 (966)
T ss_pred HhcccHHHHHHHHHHHHhcCchHHHHH-HhcchHHHHhhhHHHHHHHHHHHHhcCcH--HHHHHhhHHHHhhccCCcHHH
Confidence 999999999999999987776554432 23334444899999999999877643322 347788899988888888899
Q ss_pred HHHHHHhccccccccCCCchhHHHHHHhHHhhhh
Q 048235 403 IQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLR 436 (455)
Q Consensus 403 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 436 (455)
+..+.+.++ ++|+.++++-.|.-.+---.+|.+
T Consensus 476 I~sY~~aLk-lkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 476 IQSYRTALK-LKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHc-cCCCCchhhhHHHHHHHHHhcccc
Confidence 998888877 999999999999988888888865
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=3e-20 Score=174.19 Aligned_cols=297 Identities=11% Similarity=0.030 Sum_probs=229.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC----HHHHHHHHHH
Q 048235 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPN----ALAYKVLVNT 135 (455)
Q Consensus 60 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~ 135 (455)
.......+...|++++|...|.++.+.+.. +..++..+...+...|+++.|..+++.+......+ ..++..+...
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 333344567789999999999999987533 56788888889999999999999999887653211 3567888899
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHHhcCC
Q 048235 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL----VVSYTGLIQACLDSGN 211 (455)
Q Consensus 136 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~ 211 (455)
|.+.|+++.|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999998763 34567888899999999999999999999888664432 2245667778888999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcC
Q 048235 212 IQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291 (455)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 291 (455)
+++|...|+++.+..+.+...+..+...|...|++++|.++|+++.+.+ ......+++.++.+|...|
T Consensus 196 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------------p~~~~~~~~~l~~~~~~~g 263 (389)
T PRK11788 196 LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD------------PEYLSEVLPKLMECYQALG 263 (389)
T ss_pred HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC------------hhhHHHHHHHHHHHHHHcC
Confidence 9999999999877666667788888899999999999999999998754 1122466788889999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhh---ccchHHHHH
Q 048235 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLE---NKDYGSAIS 368 (455)
Q Consensus 292 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~ 368 (455)
++++|...++++.+. .|+...+..+...+.+.|++++|..+++++.+..+. +..+..++...+. .|+..+++.
T Consensus 264 ~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~--~~~~~~l~~~~~~~~~~g~~~~a~~ 339 (389)
T PRK11788 264 DEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPS--LRGFHRLLDYHLAEAEEGRAKESLL 339 (389)
T ss_pred CHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcC--HHHHHHHHHHhhhccCCccchhHHH
Confidence 999999999998884 466666677888889999999999999988877533 2223333433332 457778877
Q ss_pred HhhhcC
Q 048235 369 CLVSHP 374 (455)
Q Consensus 369 ~~~~~~ 374 (455)
+++.+.
T Consensus 340 ~~~~~~ 345 (389)
T PRK11788 340 LLRDLV 345 (389)
T ss_pred HHHHHH
Confidence 777554
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=3.8e-19 Score=186.76 Aligned_cols=390 Identities=13% Similarity=0.105 Sum_probs=270.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048235 12 SIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVV-YNAVLNACVRRKQWEGAFWVLQQLKQQGQKP 90 (455)
Q Consensus 12 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 90 (455)
.....+.+.|++++|++.|+.+.. +.+|+... ...........|++++|+..++++.+..+.
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~----------------~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~- 179 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFN----------------GAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG- 179 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHcc----------------CCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-
Confidence 344568889999999999999985 22444321 111112223458888888888888887433
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--------------------CHHHH---------------------
Q 048235 91 SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP--------------------NALAY--------------------- 129 (455)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------------------~~~~~--------------------- 129 (455)
+...+..+...+...|+.++|+..++++...... ....+
T Consensus 180 ~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~ 259 (1157)
T PRK11447 180 NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLA 259 (1157)
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 5666777778888888888888888876432110 00000
Q ss_pred -------------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-
Q 048235 130 -------------KVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL- 195 (455)
Q Consensus 130 -------------~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~- 195 (455)
......+...|++++|+..|++..+.. +.+..++..+..++.+.|++++|...|++..+......
T Consensus 260 ~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~ 338 (1157)
T PRK11447 260 EQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN 338 (1157)
T ss_pred HHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc
Confidence 011344567789999999999888764 33677788888899999999999999998887654321
Q ss_pred HHHH------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhccccc
Q 048235 196 VVSY------------TGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263 (455)
Q Consensus 196 ~~~~------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 263 (455)
...+ ......+.+.|++++|...|+++.+..+.+...+..+...+...|++++|.+.|+++++..
T Consensus 339 ~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--- 415 (1157)
T PRK11447 339 RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--- 415 (1157)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---
Confidence 1111 1224566788999999999999887777777888888889999999999999999988753
Q ss_pred chhhccCCCCCCc-HHH------------------------------------------HHHHHHHHHHcCCHHHHHHHH
Q 048235 264 NREYDKKGLVIPD-IYT------------------------------------------FNTMLDACAAEKRWDDLELVY 300 (455)
Q Consensus 264 ~~~~~~~~~~~p~-~~~------------------------------------------~~~li~~~~~~~~~~~a~~~~ 300 (455)
|+ ... +..+...+...|++++|.+.|
T Consensus 416 -----------p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~ 484 (1157)
T PRK11447 416 -----------PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQ 484 (1157)
T ss_pred -----------CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 21 222 222344566789999999999
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHH---------------------------
Q 048235 301 KRMLHHGLHFN-AKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKE--------------------------- 352 (455)
Q Consensus 301 ~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--------------------------- 352 (455)
++..+. .|+ ...+..+...|.+.|++++|...++++.+..+..+......
T Consensus 485 ~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~ 562 (1157)
T PRK11447 485 RQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNS 562 (1157)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcCh
Confidence 999884 344 55677788889999999999999999988776655432110
Q ss_pred ----------------HHHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHhccccccc
Q 048235 353 ----------------RFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTR 416 (455)
Q Consensus 353 ----------------~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ 416 (455)
....+...|++++|+.+++..|.++ ..+..+...+...+..+++.+.+.+.+. .+|+
T Consensus 563 ~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~------~~~~~La~~~~~~g~~~~A~~~y~~al~-~~P~ 635 (1157)
T PRK11447 563 NIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPST------RIDLTLADWAQQRGDYAAARAAYQRVLT-REPG 635 (1157)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCc------hHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC
Confidence 0111224455555665555433322 4455555555667777777777766666 8899
Q ss_pred cCCCchhHHHHHHhHHhhhhccCCcc
Q 048235 417 NGSPYPVLQNLISSCKDFLRTQSPAP 442 (455)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~ 442 (455)
|+.++..++.+|...|++.+|.....
T Consensus 636 ~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 636 NADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999988877655
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=4e-19 Score=174.89 Aligned_cols=329 Identities=12% Similarity=0.015 Sum_probs=270.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048235 10 YRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK 89 (455)
Q Consensus 10 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 89 (455)
...++..+.+.|++++|+.+++.... ..+-+...+..++.+....|++++|...|+++.+..+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~----------------~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~ 108 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVL----------------TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC 108 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHH----------------hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC
Confidence 34567788899999999999999984 33556677777888888999999999999999987544
Q ss_pred CCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048235 90 PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169 (455)
Q Consensus 90 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 169 (455)
+...+..+..++.+.|+++.|...++++....+.+...+..+..++...|++++|...++.+...... +...+..+ .
T Consensus 109 -~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~ 185 (656)
T PRK15174 109 -QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-L 185 (656)
T ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-H
Confidence 67778888899999999999999999999887788899999999999999999999999988776533 33333333 3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhH-
Q 048235 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEE- 248 (455)
Q Consensus 170 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~- 248 (455)
.+...|++++|...++.+.+....++...+..+..++...|++++|...+++..+..+.+...+..+...+...|++++
T Consensus 186 ~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 186 SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhh
Confidence 4788999999999999988775444555566667888999999999999999988777788899999999999999986
Q ss_pred ---HHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 048235 249 ---AMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN-AKRHLRMILDAS 323 (455)
Q Consensus 249 ---a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~ 323 (455)
|...|++..+.. | +...+..+...+...|++++|...+++..+. .|+ ...+..+...+.
T Consensus 266 ~~~A~~~~~~Al~l~--------------P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~ 329 (656)
T PRK15174 266 KLQAAEHWRHALQFN--------------SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALR 329 (656)
T ss_pred HHHHHHHHHHHHhhC--------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 899999999853 5 5778899999999999999999999999984 344 456667778889
Q ss_pred hcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcC
Q 048235 324 RAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHP 374 (455)
Q Consensus 324 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 374 (455)
+.|++++|...++.+....+..+.. .......+...|++++|+..++...
T Consensus 330 ~~G~~~eA~~~l~~al~~~P~~~~~-~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 330 QVGQYTAASDEFVQLAREKGVTSKW-NRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HCCCHHHHHHHHHHHHHhCccchHH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999877655431 1222333458999999999888754
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=4.5e-19 Score=186.21 Aligned_cols=390 Identities=9% Similarity=-0.009 Sum_probs=262.2
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CH
Q 048235 14 AVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKP-SA 92 (455)
Q Consensus 14 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~ 92 (455)
...+...|++++|+..|++.... .+.+..++..+..++.+.|++++|+..|++..+..... +.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~----------------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~ 339 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRA----------------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR 339 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence 45677889999999999999853 25578899999999999999999999999998865432 11
Q ss_pred hhHH------------HHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048235 93 TTYG------------LVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160 (455)
Q Consensus 93 ~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 160 (455)
..+. .....+.+.|++++|...|+++....+.+..++..+..++...|++++|++.|++..+.. +.+
T Consensus 340 ~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~ 418 (1157)
T PRK11447 340 DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGN 418 (1157)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 1121 223456789999999999999998888788889999999999999999999999998764 223
Q ss_pred HHHHHHHHHHH------------------------------------------HhcCCHHHHHHHHHHHHHcCCCCcHHH
Q 048235 161 AALYYDLARCL------------------------------------------CSAGKCEEALMQMDKICKVANKPLVVS 198 (455)
Q Consensus 161 ~~~~~~l~~~~------------------------------------------~~~g~~~~a~~~~~~m~~~~~~~~~~~ 198 (455)
...+..+...| ...|++++|...+++..+..+. +...
T Consensus 419 ~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~ 497 (1157)
T PRK11447 419 TNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWL 497 (1157)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 44444444443 2344444454444444443322 3334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcH-
Q 048235 199 YTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI- 277 (455)
Q Consensus 199 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~- 277 (455)
+..+...|.+.|++++|...++++.+..+.+...+..+...+...++.++|...++.+.... ..++.
T Consensus 498 ~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~------------~~~~~~ 565 (1157)
T PRK11447 498 TYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQ------------WNSNIQ 565 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchh------------cChhHH
Confidence 44444445555555555555555443333333333333333444445555554444432211 11111
Q ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHh
Q 048235 278 --------YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPAL 349 (455)
Q Consensus 278 --------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 349 (455)
..+..+...+...|+.++|..+++. .+.+...+..+...+.+.|++++|...|+.+.+..+..++..
T Consensus 566 ~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~ 640 (1157)
T PRK11447 566 ELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADAR 640 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 1223456678899999999999872 233455677788889999999999999999999887766543
Q ss_pred HHHHHHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHhccccccccCC------Cchh
Q 048235 350 IKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGS------PYPV 423 (455)
Q Consensus 350 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~------~~~~ 423 (455)
..+...+...|++++|++.++..+...+. +...+..+..++...++.+++...+.+.+. ..|+++. .+..
T Consensus 641 -~~la~~~~~~g~~~eA~~~l~~ll~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~-~~~~~~~~~~~a~~~~~ 716 (1157)
T PRK11447 641 -LGLIEVDIAQGDLAAARAQLAKLPATAND--SLNTQRRVALAWAALGDTAAAQRTFNRLIP-QAKSQPPSMESALVLRD 716 (1157)
T ss_pred -HHHHHHHHHCCCHHHHHHHHHHHhccCCC--ChHHHHHHHHHHHhCCCHHHHHHHHHHHhh-hCccCCcchhhHHHHHH
Confidence 33444556889999999999977644322 235566666666677777788887776665 6565543 4455
Q ss_pred HHHHHHhHHhhhhccCCcc
Q 048235 424 LQNLISSCKDFLRTQSPAP 442 (455)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~ 442 (455)
++.++...|++.+|....+
T Consensus 717 ~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 717 AARFEAQTGQPQQALETYK 735 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 6999999999988887744
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=4.8e-18 Score=167.77 Aligned_cols=398 Identities=10% Similarity=-0.025 Sum_probs=245.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048235 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ 88 (455)
Q Consensus 9 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 88 (455)
.+......+.+.|++++|+..|++.... .|+...|..+..+|.+.|++++|+..++...+...
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~-----------------~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p 191 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC-----------------KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP 191 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 3556677888999999999999998853 57788899999999999999999999999998753
Q ss_pred CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH-------------HH-
Q 048235 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM-------------ER- 154 (455)
Q Consensus 89 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-------------~~- 154 (455)
. +...+..+..+|...|++++|...|..+......+......++..+........+...++.- ..
T Consensus 192 ~-~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 270 (615)
T TIGR00990 192 D-YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQS 270 (615)
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 3 67788888999999999999998877665433222111111111111100001111111000 00
Q ss_pred -----------C--CCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHHcC-CCC-cHHHHHHHHHHHHhcCCHHHH
Q 048235 155 -----------R--GIVGSA-ALYYDLARC---LCSAGKCEEALMQMDKICKVA-NKP-LVVSYTGLIQACLDSGNIQNA 215 (455)
Q Consensus 155 -----------~--~~~~~~-~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~-~~~-~~~~~~~li~~~~~~~~~~~a 215 (455)
. ...+.. ..+..+... ....+++++|...|+.....+ ..| ....+..+...+...|++++|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA 350 (615)
T TIGR00990 271 FRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEA 350 (615)
T ss_pred ccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHH
Confidence 0 000000 000000000 012356778888887777654 122 345667777777778888888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHH
Q 048235 216 AYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295 (455)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 295 (455)
...|++..+..+.+...|..+...+...|++++|...|+++++.. +.+...|..+...+...|++++
T Consensus 351 ~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-------------p~~~~~~~~lg~~~~~~g~~~~ 417 (615)
T TIGR00990 351 LADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-------------SEDPDIYYHRAQLHFIKGEFAQ 417 (615)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------CCCHHHHHHHHHHHHHcCCHHH
Confidence 888887776555556677777777778888888888888777643 1256677777777778888888
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcC
Q 048235 296 LELVYKRMLHHGLHFN-AKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHP 374 (455)
Q Consensus 296 a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 374 (455)
|...|++..+. .|+ ...+..+...+.+.|++++|...++..++..+..+.. +..+...+...|++++|+..++...
T Consensus 418 A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~-~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 418 AGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDV-YNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred HHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88888877773 343 4455566666777888888888888777766554432 2233333447778888877777543
Q ss_pred C-CCCcc---ccHHHHHH-HHhhhcccCCcchHHHHHHHhccccccccCCCchhHHHHHHhHHhhhhccCCc
Q 048235 375 V-SGSPE---FSRNAWLK-FFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQSPA 441 (455)
Q Consensus 375 ~-~~~~~---~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 441 (455)
. .+... .+...|.. ....+...+..+++...+.+.+. ++|++..++..++.+|.+.|++++|....
T Consensus 495 ~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~-l~p~~~~a~~~la~~~~~~g~~~eAi~~~ 565 (615)
T TIGR00990 495 ELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI-IDPECDIAVATMAQLLLQQGDVDEALKLF 565 (615)
T ss_pred hcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 2 22110 01111111 11111123444455555544444 77877777777888888888877776553
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=2.6e-20 Score=168.16 Aligned_cols=413 Identities=14% Similarity=0.086 Sum_probs=312.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcCCcccc----------------ccc-cccc-cCCCCCCCHhHHHHHHHHHHhcCCHH
Q 048235 13 IAVTLGQAGHIKELFDVIDSMRSLPKKKF----------------KTG-TLER-WDPRLEPDIVVYNAVLNACVRRKQWE 74 (455)
Q Consensus 13 li~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~-~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~ 74 (455)
+..-.-+.|++.+|++.-...-+..+... ..+ +... --+..+.-..+|..+...+-..|+++
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~ 133 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQ 133 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHH
Confidence 44445677899999887766544321110 000 0000 01222344678888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048235 75 GAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154 (455)
Q Consensus 75 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 154 (455)
.|+.+|+.+.+...+ ....|..+..++...|+.+.|.+.|.+..+..+....+.+.+...+-..|++++|...+.+..+
T Consensus 134 ~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 134 DALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 999999999987544 6888888999999999999999999888876554444455555666668999999999988877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 048235 155 RGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCN 234 (455)
Q Consensus 155 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 234 (455)
... .-...|+.|...+-..|+...|+..|++..+..+. -...|-.|...|...+.++.|...+.+.....+.....+.
T Consensus 213 ~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~g 290 (966)
T KOG4626|consen 213 TQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHG 290 (966)
T ss_pred hCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhcc
Confidence 641 22456788888888899999999999998886532 3677888999999999999999999888776666778888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-H
Q 048235 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD-IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN-A 312 (455)
Q Consensus 235 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~ 312 (455)
.+...|...|..+-|+..|++.++ ..|+ ...|+.|..++-..|++.+|...+++.... .|+ .
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~--------------~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~ha 354 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALE--------------LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHA 354 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHh--------------cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccH
Confidence 899999999999999999999998 4575 678999999999999999999999999883 344 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhh
Q 048235 313 KRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKE 392 (455)
Q Consensus 313 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 392 (455)
...+.|...+...|.+++|..+|....+-.+....+ ...+...+-++|++++|+..+++.....+. -+..+..+...
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa-~nNLa~i~kqqgnl~~Ai~~YkealrI~P~--fAda~~NmGnt 431 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAA-HNNLASIYKQQGNLDDAIMCYKEALRIKPT--FADALSNMGNT 431 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhh-hhhHHHHHHhcccHHHHHHHHHHHHhcCch--HHHHHHhcchH
Confidence 577788888999999999999999988765443321 223333334889999999999877643322 34677777776
Q ss_pred hcccCCcchHHHHHHHhccccccccCCCchhHHHHHHhHHhhhhccCCcc-cccCCC
Q 048235 393 NSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQSPAP-VVNLTG 448 (455)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~ 448 (455)
+...++.++++.-..+.+. ++|.-.+++..|+.+|-..|+..+|..-.+ ...++|
T Consensus 432 ~ke~g~v~~A~q~y~rAI~-~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQ-INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHhhhHHHHHHHHHHHHh-cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 6677777788888888888 899999999999999999999988876644 444444
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=1.4e-18 Score=174.58 Aligned_cols=395 Identities=11% Similarity=0.061 Sum_probs=292.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048235 10 YRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK 89 (455)
Q Consensus 10 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 89 (455)
..-.+......|+.++|++++..... ..+.+...+..+...+...|++++|..+|++..+....
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~----------------~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~ 81 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRV----------------HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ 81 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34456678889999999999999973 22566778999999999999999999999999886433
Q ss_pred CCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048235 90 PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169 (455)
Q Consensus 90 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 169 (455)
+...+..+..++...|++++|...++++....+.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..
T Consensus 82 -~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~ 158 (765)
T PRK10049 82 -NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQ 158 (765)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 5667778888899999999999999999988887778 9999999999999999999999999875 334555666888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHhcC--CCCH-HH
Q 048235 170 CLCSAGKCEEALMQMDKICKVANKPLV------VSYTGLIQACL-----DSGNI---QNAAYIFNQMKNFC--SPNL-VT 232 (455)
Q Consensus 170 ~~~~~g~~~~a~~~~~~m~~~~~~~~~------~~~~~li~~~~-----~~~~~---~~a~~~~~~~~~~~--~~~~-~~ 232 (455)
++...+..+.|+..++.... .|+. .....++.... ..+++ ++|++.++.+.+.. .|+. ..
T Consensus 159 ~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~ 235 (765)
T PRK10049 159 ALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD 235 (765)
T ss_pred HHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH
Confidence 88889999999998876654 2221 11222233222 22234 77888888887542 2221 11
Q ss_pred HH----HHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048235 233 CN----IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV-IPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307 (455)
Q Consensus 233 ~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 307 (455)
+. ..+..+...|++++|...|+++.+.+ . .|+. .-..+...|...|++++|..+|+++.+..
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~------------~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEG------------QIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccC------------CCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 11 11334567799999999999999865 2 1432 22225678999999999999999988743
Q ss_pred CCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC----------CChH----hHHHHHHHHhhccchHHHHHHh
Q 048235 308 LHF---NAKRHLRMILDASRAGKVELLEITWEHLARADRI----------TPPA----LIKERFCNRLENKDYGSAISCL 370 (455)
Q Consensus 308 ~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~~----~~~~~~~~~~~~~~~~~A~~~~ 370 (455)
... .......+..++...|++++|...++.+....+. .|+. ........+...|++++|++++
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 211 1234566677789999999999999999876542 1221 1122223344899999999999
Q ss_pred hhcCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHhccccccccCCCchhHHHHHHhHHhhhhccCCcc
Q 048235 371 VSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQSPAP 442 (455)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 442 (455)
+++....+. +..+|..+...+...+..+++.+.+.+.+. ++|+++..+..++.++...|+|.+|+...+
T Consensus 383 ~~al~~~P~--n~~l~~~lA~l~~~~g~~~~A~~~l~~al~-l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 383 RELAYNAPG--NQGLRIDYASVLQARGWPRAAENELKKAEV-LEPRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred HHHHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 987643333 347888888876677777677777765555 999999999999999999999999887754
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=3.1e-18 Score=169.07 Aligned_cols=362 Identities=11% Similarity=-0.026 Sum_probs=253.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 048235 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWR 138 (455)
Q Consensus 59 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 138 (455)
.+......+.+.|++++|+..|++..+. .|+...|..+..+|.+.|+++.|++.++......+.+..+|..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3556677889999999999999998874 56778899999999999999999999999998888888999999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---------------------------cC
Q 048235 139 EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK---------------------------VA 191 (455)
Q Consensus 139 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---------------------------~~ 191 (455)
.|++++|+.-|......+...+... ..++..+........+...++.-.. ..
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999988876655432222111 1111111110001111111110000 00
Q ss_pred CCCc-HHHHHHHHHH---HHhcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccc
Q 048235 192 NKPL-VVSYTGLIQA---CLDSGNIQNAAYIFNQMKNF---CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHIN 264 (455)
Q Consensus 192 ~~~~-~~~~~~li~~---~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 264 (455)
..+. ...+..+... ....+++++|.+.|+..... .+.....|..+...+...|++++|...|++.++..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~---- 361 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD---- 361 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----
Confidence 0000 0001111111 12246899999999998764 23456678888999999999999999999999854
Q ss_pred hhhccCCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 048235 265 REYDKKGLVIPD-IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADR 343 (455)
Q Consensus 265 ~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 343 (455)
|+ ...|..+...+...|++++|...|+++.+... -+...+..+...+...|++++|...|++.++..+
T Consensus 362 ----------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P 430 (615)
T TIGR00990 362 ----------PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP 430 (615)
T ss_pred ----------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 64 66888889999999999999999999988432 2456788888889999999999999999998876
Q ss_pred CCChHhHHHHHHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHhccccccccCC-Cc-
Q 048235 344 ITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGS-PY- 421 (455)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~- 421 (455)
..... +..+...+.+.|++++|+..++......+. +...|..+...+...++.+++.+.+.+.+. ++|++.. ..
T Consensus 431 ~~~~~-~~~la~~~~~~g~~~eA~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~-l~p~~~~~~~~ 506 (615)
T TIGR00990 431 DFIFS-HIQLGVTQYKEGSIASSMATFRRCKKNFPE--APDVYNYYGELLLDQNKFDEAIEKFDTAIE-LEKETKPMYMN 506 (615)
T ss_pred cCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHccCHHHHHHHHHHHHh-cCCcccccccc
Confidence 54432 333445556999999999999876543322 336777777766788888788888777666 8886422 22
Q ss_pred ----hhHHH-HHHhHHhhhhccCCcc
Q 048235 422 ----PVLQN-LISSCKDFLRTQSPAP 442 (455)
Q Consensus 422 ----~~l~~-~~~~~~~~~~a~~~~~ 442 (455)
...+. .|...|++.+|.....
T Consensus 507 ~~~l~~~a~~~~~~~~~~~eA~~~~~ 532 (615)
T TIGR00990 507 VLPLINKALALFQWKQDFIEAENLCE 532 (615)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 22233 3444689988887754
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=4.2e-18 Score=167.74 Aligned_cols=308 Identities=14% Similarity=0.097 Sum_probs=255.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048235 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ 88 (455)
Q Consensus 9 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 88 (455)
.+..++.++...|++++|++.|+++... .+.+...|..+...+...|++++|...|+++.+...
T Consensus 78 ~l~~l~~~~l~~g~~~~A~~~l~~~l~~----------------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P 141 (656)
T PRK15174 78 LLRRWVISPLASSQPDAVLQVVNKLLAV----------------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS 141 (656)
T ss_pred HHHHHhhhHhhcCCHHHHHHHHHHHHHh----------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4555667777899999999999999853 356678899999999999999999999999998643
Q ss_pred CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048235 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168 (455)
Q Consensus 89 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 168 (455)
. +...+..+..++...|++++|...++.+....+.+...+..+. .+...|++++|...++.+.+....++......+.
T Consensus 142 ~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~ 219 (656)
T PRK15174 142 G-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAV 219 (656)
T ss_pred C-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHH
Confidence 3 5778888999999999999999999988777665666665543 4788999999999999988775444445555667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 048235 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQN----AAYIFNQMKNFCSPNLVTCNIMVKAYLEHG 244 (455)
Q Consensus 169 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 244 (455)
.++...|++++|...+++....... +...+..+...+...|++++ |...|++..+..+.+...+..+...+...|
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g 298 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTG 298 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Confidence 8889999999999999999987643 67888889999999999986 899999998877788899999999999999
Q ss_pred ChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHH
Q 048235 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKR-HLRMILDA 322 (455)
Q Consensus 245 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~ 322 (455)
++++|...+++..+.. | +...+..+...+...|++++|...++++... .|+... +..+..++
T Consensus 299 ~~~eA~~~l~~al~l~--------------P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al 362 (656)
T PRK15174 299 QNEKAIPLLQQSLATH--------------PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAAL 362 (656)
T ss_pred CHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 9999999999999854 5 5667778889999999999999999999984 355433 33445668
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCChHhHH
Q 048235 323 SRAGKVELLEITWEHLARADRITPPALIK 351 (455)
Q Consensus 323 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 351 (455)
...|+.++|...|+...+..+......+.
T Consensus 363 ~~~G~~deA~~~l~~al~~~P~~~~~~~~ 391 (656)
T PRK15174 363 LQAGKTSEAESVFEHYIQARASHLPQSFE 391 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhChhhchhhHH
Confidence 99999999999999998887765544333
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=3.1e-17 Score=162.15 Aligned_cols=392 Identities=9% Similarity=0.007 Sum_probs=285.3
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048235 14 AVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDI-VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSA 92 (455)
Q Consensus 14 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 92 (455)
+-...+.|+++.|++.|++..+. .|+. .....++..+...|+.++|+..+++.... .....
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~-----------------~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~ 102 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKA-----------------GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISS 102 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhh-----------------CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCH
Confidence 33466899999999999999853 3443 22238888899999999999999998821 11123
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048235 93 TTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172 (455)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 172 (455)
.....+...+...|+++.|.++|+++....+.+...+..++..+...++.++|++.++++.... |+...+..++..+.
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~ 180 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNR 180 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHH
Confidence 3333345678888999999999999999988888888888999999999999999999998764 55555555555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH--------------------------------
Q 048235 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN-------------------------------- 220 (455)
Q Consensus 173 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~-------------------------------- 220 (455)
..++..+|+..++++.+..+. +...+..+..+..+.|-...|.++..
T Consensus 181 ~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 181 ATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred hcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccccc
Confidence 567776799999999887643 55555555565555544444333332
Q ss_pred ----------------HHHhc---CCCCHHHH----HHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcH
Q 048235 221 ----------------QMKNF---CSPNLVTC----NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI 277 (455)
Q Consensus 221 ----------------~~~~~---~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~ 277 (455)
.+... .|+....| .-.+-++...|++.++++.|+.+...+ .....
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~------------~~~P~ 327 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG------------YKMPD 327 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC------------CCCCH
Confidence 22221 22221222 234556778899999999999999887 44455
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC--------
Q 048235 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHG-----LHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI-------- 344 (455)
Q Consensus 278 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-------- 344 (455)
.+-..+.++|...+++++|..+++.+.... ..++......|.-++..++++++|..+++.+.+..+.
T Consensus 328 y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~ 407 (822)
T PRK14574 328 YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLP 407 (822)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCC
Confidence 677889999999999999999999997732 1223444578889999999999999999999874441
Q ss_pred --CChHhHHHH----HHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHhccccccccC
Q 048235 345 --TPPALIKER----FCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNG 418 (455)
Q Consensus 345 --~~~~~~~~~----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 418 (455)
.|+..+... ...++-.|++.+|.+.+++.....|. +..++..+...+..++..+++...+ +.+..++|++.
T Consensus 408 ~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~--n~~l~~~~A~v~~~Rg~p~~A~~~~-k~a~~l~P~~~ 484 (822)
T PRK14574 408 GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA--NQNLRIALASIYLARDLPRKAEQEL-KAVESLAPRSL 484 (822)
T ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHH-HHHhhhCCccH
Confidence 122222222 22234789999999999987644433 4467777777656666666776666 77777999999
Q ss_pred CCchhHHHHHHhHHhhhhccCCc
Q 048235 419 SPYPVLQNLISSCKDFLRTQSPA 441 (455)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~ 441 (455)
.+...+++++...++|.+|+.++
T Consensus 485 ~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 485 ILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999999999887665
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=7.8e-16 Score=154.96 Aligned_cols=378 Identities=13% Similarity=0.047 Sum_probs=270.3
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048235 7 TVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ 86 (455)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 86 (455)
...+..+...+...|++++|.++|++.... .+.+...+..+...+...|++++|+..+++..+.
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~ 112 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSL----------------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG 112 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 446888999999999999999999998753 2556788889999999999999999999999987
Q ss_pred CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----
Q 048235 87 GQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA----- 161 (455)
Q Consensus 87 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----- 161 (455)
... +.. +..+..++...|+.+.|...++++....+.+..++..+..++...|..+.|+..++.... .|+.
T Consensus 113 ~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~ 187 (765)
T PRK10049 113 APD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLE 187 (765)
T ss_pred CCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHH
Confidence 433 555 888888999999999999999999998888888888899999999999999998876553 2221
Q ss_pred -HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHHc-CCCCcHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048235 162 -ALYYDLARCLC-----SAGKC---EEALMQMDKICKV-ANKPLVV-SY----TGLIQACLDSGNIQNAAYIFNQMKNFC 226 (455)
Q Consensus 162 -~~~~~l~~~~~-----~~g~~---~~a~~~~~~m~~~-~~~~~~~-~~----~~li~~~~~~~~~~~a~~~~~~~~~~~ 226 (455)
.....++.... ..+++ ++|+..++.+.+. ...|+.. .+ ...+.++...|++++|...|+.+.+..
T Consensus 188 ~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~ 267 (765)
T PRK10049 188 ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEG 267 (765)
T ss_pred HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccC
Confidence 01122222222 12234 7788888888864 2223221 11 111344567799999999999997753
Q ss_pred C--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048235 227 S--PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI--PDIYTFNTMLDACAAEKRWDDLELVYKR 302 (455)
Q Consensus 227 ~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~ 302 (455)
+ |+. ....+..+|...|++++|..+|+++.+... .. ........+..++...|++++|..+++.
T Consensus 268 ~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p-----------~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~ 335 (765)
T PRK10049 268 QIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPE-----------TIADLSDEELADLFYSLLESENYPGALTVTAH 335 (765)
T ss_pred CCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCC-----------CCCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 2 222 222257789999999999999999887430 11 1134566677788999999999999999
Q ss_pred HHHcCC-----------CCCH---HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHH
Q 048235 303 MLHHGL-----------HFNA---KRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAIS 368 (455)
Q Consensus 303 m~~~~~-----------~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 368 (455)
+.+... .|+. ..+..+...+...|++++|+.+++++....|..+. ........+...|++++|++
T Consensus 336 ~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~-l~~~lA~l~~~~g~~~~A~~ 414 (765)
T PRK10049 336 TINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG-LRIDYASVLQARGWPRAAEN 414 (765)
T ss_pred HhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhcCCHHHHHH
Confidence 987421 2332 23445666788999999999999999988877654 33334444458999999999
Q ss_pred HhhhcCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHhccccccccCCCc
Q 048235 369 CLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPY 421 (455)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 421 (455)
.+++.....+. +..++..........++.+++...+.+.+ +.+|+++.+.
T Consensus 415 ~l~~al~l~Pd--~~~l~~~~a~~al~~~~~~~A~~~~~~ll-~~~Pd~~~~~ 464 (765)
T PRK10049 415 ELKKAEVLEPR--NINLEVEQAWTALDLQEWRQMDVLTDDVV-AREPQDPGVQ 464 (765)
T ss_pred HHHHHHhhCCC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCCCCHHHH
Confidence 99987643333 22444444443345555555555555544 4999998544
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=4.1e-15 Score=150.26 Aligned_cols=97 Identities=12% Similarity=0.155 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048235 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308 (455)
Q Consensus 229 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 308 (455)
+...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++...
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--------------~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-- 538 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--------------QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH-- 538 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--
Confidence 34444444444443 4555566555555443 244333222333334566666666666655442
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 048235 309 HFNAKRHLRMILDASRAGKVELLEITWEHLARAD 342 (455)
Q Consensus 309 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 342 (455)
.|+...+..+...+.+.|+.++|...++...+..
T Consensus 539 ~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~ 572 (987)
T PRK09782 539 DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG 572 (987)
T ss_pred CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 2222233334444455555555555555554443
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=2.1e-14 Score=124.95 Aligned_cols=349 Identities=13% Similarity=0.113 Sum_probs=251.5
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048235 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQL 83 (455)
Q Consensus 4 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 83 (455)
..+..+|..+|.++|+--..+.|.+++++-.. ...+.+..+||.+|.+-.-..+ .+++.+|
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~---------------~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EM 264 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRA---------------AKGKVYREAFNGLIGASSYSVG----KKLVAEM 264 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHH---------------hhheeeHHhhhhhhhHHHhhcc----HHHHHHH
Confidence 35678999999999999999999999999876 4557899999999987654433 7889999
Q ss_pred HHcCCCCCHhhHHHHHHHHHHcCChhH----HHHHHHHHHhcCC-CCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHC--
Q 048235 84 KQQGQKPSATTYGLVMEVMLACGKYNL----VYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDE-AVSAVEDMERR-- 155 (455)
Q Consensus 84 ~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~-- 155 (455)
....+.||..|||+++.+..+.|+++. |.+++.+|++-|. |...+|..+|..+++.++..+ |..++.++...
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt 344 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT 344 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc
Confidence 999999999999999999999998876 5667778888777 999999999999999888754 45555555432
Q ss_pred --CCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048235 156 --GIV---G-SAALYYDLARCLCSAGKCEEALMQMDKICKVA----NKPL---VVSYTGLIQACLDSGNIQNAAYIFNQM 222 (455)
Q Consensus 156 --~~~---~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~ 222 (455)
.+. | |...|..-+..|....+.+.|.++..-+.... +.|+ ..-|..+..+.|.....+.....|+.|
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l 424 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL 424 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222 2 34556677888888899999988776654321 2233 344677888889999999999999999
Q ss_pred Hhc-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccch-------hhccCCCCCCcHH---HHHHHHHHHHHcC
Q 048235 223 KNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR-------EYDKKGLVIPDIY---TFNTMLDACAAEK 291 (455)
Q Consensus 223 ~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~~~~~p~~~---~~~~li~~~~~~~ 291 (455)
.-. .-|+..+..-++++..-.+.++-.-++|..+...|..... ...-..+..|+.. -+..+..-|+. .
T Consensus 425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa-d 503 (625)
T KOG4422|consen 425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA-D 503 (625)
T ss_pred ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH-H
Confidence 654 7788888899999999999999999999999888733222 0001112233322 22222222221 1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCChHhH---HHHHHHHhhccchHHHH
Q 048235 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARAD-RITPPALI---KERFCNRLENKDYGSAI 367 (455)
Q Consensus 292 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~A~ 367 (455)
-.+.....-.+|.+..+. ....+.+...+.+.|..++|.+++..+.+++ .++..... .+++....+......|+
T Consensus 504 ~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 504 IKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 112222333445554444 4467777777899999999999999995544 44433333 35666666888899999
Q ss_pred HHhhhcC
Q 048235 368 SCLVSHP 374 (455)
Q Consensus 368 ~~~~~~~ 374 (455)
.+++-+.
T Consensus 582 ~~lQ~a~ 588 (625)
T KOG4422|consen 582 EVLQLAS 588 (625)
T ss_pred HHHHHHH
Confidence 9888764
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=2.4e-14 Score=141.90 Aligned_cols=375 Identities=13% Similarity=0.048 Sum_probs=271.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChH
Q 048235 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTD 143 (455)
Q Consensus 64 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 143 (455)
+-...+.|+++.|+..|++..+....-....+ .++..+...|+.++|+..+++.....+........+...|...|+++
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33456999999999999999986433112344 77888889999999999999998433344445555577899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048235 144 EAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223 (455)
Q Consensus 144 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 223 (455)
+|+++|+++.+.. +-++..+..++..+...++.++|++.++.+.... |+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999999986 3346667788899999999999999999998864 455556555555555667767999999998
Q ss_pred hcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcc--------------------cccch-----------------h
Q 048235 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS--------------------NHINR-----------------E 266 (455)
Q Consensus 224 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------------------~~~~~-----------------~ 266 (455)
+..|.+...+..++.+..+.|-...|.++..+-...- .-++. .
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 8778888888999999999888888776665422100 00000 0
Q ss_pred hccCCCCCC-cHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 048235 267 YDKKGLVIP-DIYTF----NTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341 (455)
Q Consensus 267 ~~~~~~~~p-~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 341 (455)
....-+..| ....| .-.+-++...++..++++.++.+...|......+-..+.++|...+..++|..++..+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 000011223 22222 2234577889999999999999999886644557888999999999999999999999765
Q ss_pred CCC---CChHh--HHHHHHHHhhccchHHHHHHhhhcCCC--------------CCccccHHHHHHHHhhhcccCCcchH
Q 048235 342 DRI---TPPAL--IKERFCNRLENKDYGSAISCLVSHPVS--------------GSPEFSRNAWLKFFKENSQHFGQDTL 402 (455)
Q Consensus 342 ~~~---~~~~~--~~~~~~~~~~~~~~~~A~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~~ 402 (455)
.+. .+... ...++-.+++.+++++|..+++++... |+++|. .....+...++..++..++
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~-~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI-EGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH-HHHHHHHHHHHHcCCHHHH
Confidence 531 12222 245677788999999999999876542 222222 2222223334566666677
Q ss_pred HHHHHHhccccccccCCCchhHHHHHHhHHhhhhccCCcccc
Q 048235 403 IQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQSPAPVV 444 (455)
Q Consensus 403 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 444 (455)
.+.+.+.+. ..|.|+.....++.++...|+..+|+...+..
T Consensus 436 e~~le~l~~-~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 436 QKKLEDLSS-TAPANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred HHHHHHHHH-hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 777766655 99999999999999999999999999887643
No 25
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=1.4e-13 Score=128.08 Aligned_cols=282 Identities=10% Similarity=0.043 Sum_probs=194.7
Q ss_pred cCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHH--
Q 048235 20 AGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIV-VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYG-- 96 (455)
Q Consensus 20 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-- 96 (455)
.|+++.|.+.+...... .+++. .|-....+..+.|+++.|...+.++.+. .|+.....
T Consensus 97 eGd~~~A~k~l~~~~~~-----------------~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l 157 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH-----------------AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEI 157 (398)
T ss_pred CCCHHHHHHHHHHHHhc-----------------ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHH
Confidence 48888888777766531 12222 2333344447788888888888888764 44443332
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHH
Q 048235 97 LVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA-------LYYDLAR 169 (455)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------~~~~l~~ 169 (455)
.....+...|+++.|...++++.+..|.+..+...+...|.+.|++++|.+++..+.+.+..++.. +|..++.
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~ 237 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD 237 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 335677788888888888888888777788888888888888888888888888888776543221 2223333
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHH
Q 048235 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEA 249 (455)
Q Consensus 170 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 249 (455)
......+.+...++++.+.+.- +.+......+...+...|+.+.|..++++..+ .+++... .++.+.+..++.+++
T Consensus 238 ~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l--~~l~~~l~~~~~~~a 313 (398)
T PRK10747 238 QAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERL--VLLIPRLKTNNPEQL 313 (398)
T ss_pred HHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHH--HHHHhhccCCChHHH
Confidence 3334445555566666554432 34677777788888888888888888877765 4455532 233444456888888
Q ss_pred HHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 048235 250 MKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328 (455)
Q Consensus 250 ~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 328 (455)
.+..+...+.. | |...+..+...|.+.+++++|.+.|+.+.+ ..|+..++..+...+.+.|+.
T Consensus 314 l~~~e~~lk~~--------------P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 314 EKVLRQQIKQH--------------GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKP 377 (398)
T ss_pred HHHHHHHHhhC--------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCH
Confidence 88888888753 5 556677778888888888888888888887 457877777888888888888
Q ss_pred HHHHHHHHHHhh
Q 048235 329 ELLEITWEHLAR 340 (455)
Q Consensus 329 ~~a~~~~~~~~~ 340 (455)
++|.+++++-..
T Consensus 378 ~~A~~~~~~~l~ 389 (398)
T PRK10747 378 EEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHh
Confidence 888888887644
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.72 E-value=2.8e-13 Score=137.15 Aligned_cols=344 Identities=9% Similarity=-0.061 Sum_probs=218.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhc---CCCCHHHHHHHHHHHHhcCC---hHH
Q 048235 71 KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS---YIPNALAYKVLVNTLWREGK---TDE 144 (455)
Q Consensus 71 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~---~~~ 144 (455)
+...++...+..|.+.... +....-.+.-...+.|+.++|.++|+..... +..+....+.++..|.+.+. ...
T Consensus 356 ~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred CchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 5566666666666665222 3333333333445777777777777776552 11344455566666666655 222
Q ss_pred HHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHH
Q 048235 145 AVSA----------------------VEDMERR-GI-VG--SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS 198 (455)
Q Consensus 145 a~~~----------------------~~~m~~~-~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 198 (455)
+..+ ++..... +. ++ +...|..+..++.. ++.++|...+.+..... |+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHH
Confidence 2222 1111111 11 23 45666667777666 77878888777766654 44444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCc-H
Q 048235 199 YTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD-I 277 (455)
Q Consensus 199 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~-~ 277 (455)
...+...+...|++++|...|+++... +|+...+..+..++...|++++|...+++.++.. |+ .
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~-~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--------------P~~~ 576 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH-DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--------------LGDN 576 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------CccH
Confidence 444455556788888888888876543 4444556666777788888888888888887743 43 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHH
Q 048235 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNR 357 (455)
Q Consensus 278 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (455)
..+..+.......|++++|...+++..+ +.|+...+..+...+.+.|++++|...+++..+..+..+. ....+...+
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~-a~~nLG~aL 653 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN-YQAALGYAL 653 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 3333344444556888888888888887 4456667777777788888888888888888877766553 223333444
Q ss_pred hhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHhccccccccCCCchhHHHHHHhHHhhhhc
Q 048235 358 LENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLRT 437 (455)
Q Consensus 358 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a 437 (455)
...|++++|+..++......+. +...|..+..++...+..+++...+.+.+. ++|++..+....+++..+..++.++
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~P~--~~~a~~nLA~al~~lGd~~eA~~~l~~Al~-l~P~~a~i~~~~g~~~~~~~~~~~a 730 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGLPD--DPALIRQLAYVNQRLDDMAATQHYARLVID-DIDNQALITPLTPEQNQQRFNFRRL 730 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCCchhhhhhhHHHHHHHHHHHH
Confidence 5788888888887766543322 336677777766667776666666655554 8888888888888888888877655
Q ss_pred cC
Q 048235 438 QS 439 (455)
Q Consensus 438 ~~ 439 (455)
..
T Consensus 731 ~~ 732 (987)
T PRK09782 731 HE 732 (987)
T ss_pred HH
Confidence 44
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=9.5e-14 Score=120.94 Aligned_cols=305 Identities=11% Similarity=0.104 Sum_probs=228.9
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCHHHH
Q 048235 51 PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAY 129 (455)
Q Consensus 51 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~ 129 (455)
...+.+..+|..||.++|+--..+.|.+++++-.....+.+..+||.+|.+-+-..+ .++..+|..... ||..|+
T Consensus 201 E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 201 ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhH
Confidence 344667889999999999999999999999999998889999999999976543333 778888876655 999999
Q ss_pred HHHHHHHHhcCChHHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHH----HcCCC----CcH
Q 048235 130 KVLVNTLWREGKTDEA----VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE-ALMQMDKIC----KVANK----PLV 196 (455)
Q Consensus 130 ~~li~~~~~~g~~~~a----~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~----~~~~~----~~~ 196 (455)
|+++++..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++. ...++ .|.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 9999999999988765 5778889999999999999999999999888755 333333332 22232 246
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhc
Q 048235 197 VSYTGLIQACLDSGNIQNAAYIFNQMKNF-----CSPNL---VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD 268 (455)
Q Consensus 197 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 268 (455)
..|...+..|.+..+.+.|.++..-+..+ ++|+. .-|..+....|+....+.-..+|+.|.-.-
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~-------- 428 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA-------- 428 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce--------
Confidence 66788889999999999999998888654 44442 335667788888899999999999998776
Q ss_pred cCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-Ch--------HH-----HHHH
Q 048235 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG-KV--------EL-----LEIT 334 (455)
Q Consensus 269 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~--------~~-----a~~~ 334 (455)
.-|+..+-..++++....++++-.-++|..++..|.......-..++..+++.. .. .. |..+
T Consensus 429 ----y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~ 504 (625)
T KOG4422|consen 429 ----YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADI 504 (625)
T ss_pred ----ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999999998775444433333333333332 11 00 1111
Q ss_pred H-------HHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhc
Q 048235 335 W-------EHLARADRITPPALIKERFCNRLENKDYGSAISCLVSH 373 (455)
Q Consensus 335 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 373 (455)
+ .++. ....+...+..+...++|.|...+|.+++.-.
T Consensus 505 ~e~~e~~~~R~r--~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~ 548 (625)
T KOG4422|consen 505 KEAYESQPIRQR--AQDWPATSLNCIAILLLRAGRTQKAWEMLGLF 548 (625)
T ss_pred HHHHHhhHHHHH--hccCChhHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 1 1222 22334445566666667999999999977644
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.71 E-value=2e-13 Score=130.41 Aligned_cols=138 Identities=11% Similarity=-0.027 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhh
Q 048235 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVS 372 (455)
Q Consensus 293 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 372 (455)
.++|+++|.++++... -|...-+.+-..++..|++.+|..+|.++.+.....++. +..+.-+++..|+|..|+++++.
T Consensus 628 ~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv-~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDV-WLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCce-eeeHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555321 133344444444556666666666666665554422221 33444445556666666665554
Q ss_pred cCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHhccccccccCCCchhHHHHHHhHHh
Q 048235 373 HPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKD 433 (455)
Q Consensus 373 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 433 (455)
-........++.+..-|..++...+...++.+.....+. ..|.|+...+.++.+..+.+.
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~-~~p~~~~v~FN~a~v~kkla~ 765 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH-LAPSNTSVKFNLALVLKKLAE 765 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hCCccchHHhHHHHHHHHHHH
Confidence 332221122334555555555555555555555555444 556666666665555555443
No 29
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=1.5e-13 Score=128.62 Aligned_cols=289 Identities=10% Similarity=0.018 Sum_probs=183.9
Q ss_pred hcCChhHHHHHHHHhhcCCccccccccccccCCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 048235 19 QAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPD-IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGL 97 (455)
Q Consensus 19 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 97 (455)
..|+++.|.+.+....+. .|+ ...+-....+..+.|+++.|.+.+.+..+....++...-..
T Consensus 96 ~~g~~~~A~~~l~~~~~~-----------------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~ 158 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH-----------------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIA 158 (409)
T ss_pred hCCCHHHHHHHHHHHhhc-----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHH
Confidence 457888888888776642 333 33334445667777888888888888766532222223333
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---Hhc
Q 048235 98 VMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL---CSA 174 (455)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~---~~~ 174 (455)
....+...|+++.|...++.+.+..|.+..++..+...+.+.|+++.|.+++..+.+.+..+.......-..++ ...
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 46667778888888888888887777777788888888888888888888888888776443322111111111 222
Q ss_pred CCHHHHHHHHHHHHHcCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHhcCChhHH
Q 048235 175 GKCEEALMQMDKICKVANK---PLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTC--NIMVKAYLEHGLFEEA 249 (455)
Q Consensus 175 g~~~~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a 249 (455)
+..+++.+.+..+.+.... .+...+..+...+...|+.+.|.+++++..+..+.+.... ..........++.+.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHH
Confidence 2333333344444443321 2667777777888888888888888888766444433211 1122222334667777
Q ss_pred HHHHHHHHhcccccchhhccCCCCCC-cH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 048235 250 MKLFQEMAEDSNHINREYDKKGLVIP-DI--YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG 326 (455)
Q Consensus 250 ~~~~~~m~~~~~~~~~~~~~~~~~~p-~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 326 (455)
.+.+++..+.. | |+ ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|
T Consensus 319 ~~~~e~~lk~~--------------p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g 384 (409)
T TIGR00540 319 EKLIEKQAKNV--------------DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAG 384 (409)
T ss_pred HHHHHHHHHhC--------------CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcC
Confidence 77777777643 5 33 4555777778888888888888885444445677777777777788888
Q ss_pred ChHHHHHHHHHH
Q 048235 327 KVELLEITWEHL 338 (455)
Q Consensus 327 ~~~~a~~~~~~~ 338 (455)
+.++|.++|++.
T Consensus 385 ~~~~A~~~~~~~ 396 (409)
T TIGR00540 385 DKAEAAAMRQDS 396 (409)
T ss_pred CHHHHHHHHHHH
Confidence 888888888764
No 30
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.2e-12 Score=125.10 Aligned_cols=269 Identities=13% Similarity=0.088 Sum_probs=174.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048235 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ 85 (455)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 85 (455)
++...+.|...|.-.|+++.+..+...+.... ..-.--...|-.+.++|...|++++|...|-+..+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-------------~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k 335 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNT-------------ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK 335 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-------------hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence 45566777777888888888888888877420 00112234577788888888888888888877766
Q ss_pred cCCCCCHhh--HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCC
Q 048235 86 QGQKPSATT--YGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREG----KTDEAVSAVEDMERRGIVG 159 (455)
Q Consensus 86 ~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~~ 159 (455)
. .|+.++ +.-+...+.+.|+++.+...|+.+....+.+..+...|...|...+ ..+.|..++.+..+.- +.
T Consensus 336 ~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~ 412 (1018)
T KOG2002|consen 336 A--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PV 412 (1018)
T ss_pred c--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cc
Confidence 4 334333 3456778888888888888888888877777788888877777765 4456666666655543 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH----HHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC----
Q 048235 160 SAALYYDLARCLCSAGKCEEALMQMDK----ICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF----CS---- 227 (455)
Q Consensus 160 ~~~~~~~l~~~~~~~g~~~~a~~~~~~----m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~---- 227 (455)
|...|-.+...+-. ++...++.+|.. +...+..+.....|.+...+...|++..|...|...... ..
T Consensus 413 d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred cHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 56666666665544 444444655554 334454566778888888888888888888888876543 12
Q ss_pred --CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048235 228 --PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD-IYTFNTMLDACAAEKRWDDLELVYKRML 304 (455)
Q Consensus 228 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 304 (455)
+++.+--.+...+-..++++.|.+.|..+.+.. |+ +..|..++-.....+...+|...++...
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--------------p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l 557 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--------------PGYIDAYLRLGCMARDKNNLYEASLLLKDAL 557 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--------------chhHHHHHHhhHHHHhccCcHHHHHHHHHHH
Confidence 222233335556666777888888888877753 43 3344444422223345556666666555
Q ss_pred H
Q 048235 305 H 305 (455)
Q Consensus 305 ~ 305 (455)
.
T Consensus 558 ~ 558 (1018)
T KOG2002|consen 558 N 558 (1018)
T ss_pred h
Confidence 4
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=4.2e-16 Score=138.67 Aligned_cols=262 Identities=17% Similarity=0.183 Sum_probs=102.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048235 12 SIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPR-LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKP 90 (455)
Q Consensus 12 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 90 (455)
.+...+.+.|++++|+++++.... .. .+.|...|..+...+...++++.|...++++...+..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~---------------~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~- 76 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQ---------------KIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA- 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc---------------cccccccccccccccccccccccccccccccccccccccc-
Confidence 446677788888888888855432 12 2345555666666666778888888888888876544
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHH
Q 048235 91 SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG-IVGSAALYYDLAR 169 (455)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~ 169 (455)
+...+..++.. ...+++++|.+++...-+.. ++...+..++..+.+.++++++.++++.+.... ...+...|..+..
T Consensus 77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~ 154 (280)
T PF13429_consen 77 NPQDYERLIQL-LQDGDPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAE 154 (280)
T ss_dssp -------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHH
T ss_pred ccccccccccc-cccccccccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 56666666666 67888888888877654432 456667777888888888888888888876542 3456667777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHH
Q 048235 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEA 249 (455)
Q Consensus 170 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 249 (455)
.+.+.|+.++|++.+++..+..+. |....+.++..+...|+.+++.+++.......+.|...+..+..+|...|+.++|
T Consensus 155 ~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 155 IYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp HHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccc
Confidence 888888888888888888887533 5677778888888888888888888877666566667778888888888888888
Q ss_pred HHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 250 MKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 250 ~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
+.+|++..... +.|+.....+..++...|+.++|.++..++..
T Consensus 234 l~~~~~~~~~~-------------p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 234 LEYLEKALKLN-------------PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHS-------------TT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccc-------------cccccccccccccccccccccccccccccccc
Confidence 88888888754 23677777788888888888888888776543
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=1.7e-13 Score=129.97 Aligned_cols=328 Identities=14% Similarity=0.099 Sum_probs=228.9
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048235 100 EVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179 (455)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 179 (455)
+.....|+++.|.+++.++.+..+.+...|.+|..+|-+.|+.+++...+-.....+ +.|...|..+.....+.|.+++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHH
Confidence 334445888888888888888777788888888888888888888877765444443 4456777777777778888888
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHhcCChhHHHHHHH
Q 048235 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV-----TCNIMVKAYLEHGLFEEAMKLFQ 254 (455)
Q Consensus 180 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~ 254 (455)
|.-.|.+..+..+. +...+-.-...|-+.|+...|...|.++-+..+|... ..-.++..|...++.+.|.+.++
T Consensus 226 A~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88888888877533 4444444566777888888888888888765443322 22234566677777788888888
Q ss_pred HHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------------------C
Q 048235 255 EMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH---------------------------G 307 (455)
Q Consensus 255 ~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------------~ 307 (455)
.....+. -..+...++.++..|.+...++.|......+... +
T Consensus 305 ~~~s~~~-----------~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 305 GALSKEK-----------DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred HHHhhcc-----------ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 8776431 2345667778888888888888888877777651 1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC--CCChHhHHHHHHHHhhccchHHHHHHhhhcCCCCCccccHHH
Q 048235 308 LHFNAKRHLRMILDASRAGKVELLEITWEHLARADR--ITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNA 385 (455)
Q Consensus 308 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 385 (455)
+.++... ..+..++.+....+....+...+..... .....++..+...+.+.|++.+|+.++......+... +..+
T Consensus 374 ~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~-~~~v 451 (895)
T KOG2076|consen 374 LSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ-NAFV 451 (895)
T ss_pred CCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc-chhh
Confidence 2222222 1233334444444444445555555442 2222344555566679999999999998776555332 2579
Q ss_pred HHHHHhhhcccCCcchHHHHHHHhccccccccCCCchhHHHHHHhHHhhhhccCCccc
Q 048235 386 WLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQSPAPV 443 (455)
Q Consensus 386 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 443 (455)
|..+...+...+..++|++.+.+.+. ..|+|.++.+.|+.+|.++|+.++|.+++..
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~-~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLI-LAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHh-cCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 99999887788888888888877777 9999999999999999999999998887665
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=1.5e-15 Score=135.16 Aligned_cols=261 Identities=15% Similarity=0.189 Sum_probs=81.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 048235 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKP-SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREG 140 (455)
Q Consensus 62 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 140 (455)
.+...+.+.|++++|++++........+| |..-|..+...+...++.+.|.+.++++...+..+...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44556666677777777775444332122 333333344445556667777777776665554455556666655 5666
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048235 141 KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA-NKPLVVSYTGLIQACLDSGNIQNAAYIF 219 (455)
Q Consensus 141 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~ 219 (455)
++++|.+++.+..+.. +++..+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|...+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6677766666554432 334445556666666667777666666655432 2345556666666666666777777666
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 048235 220 NQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299 (455)
Q Consensus 220 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 299 (455)
++..+..|.|....+.++..+...|+.+++.++++...+.. +.|+..+..+..+|...|+.++|..+
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-------------~~~~~~~~~la~~~~~lg~~~~Al~~ 236 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-------------PDDPDLWDALAAAYLQLGRYEEALEY 236 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--------------HTSCCHCHHHHHHHHHHT-HHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-------------cCHHHHHHHHHHHhcccccccccccc
Confidence 66665555566666666666666666666666666665542 23445556666666666666777776
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048235 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339 (455)
Q Consensus 300 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 339 (455)
|++..+.. +.|+.....+..++...|+.++|.++..++.
T Consensus 237 ~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 237 LEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred cccccccc-ccccccccccccccccccccccccccccccc
Confidence 66666632 1245555566666666666666666655543
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.65 E-value=9.9e-12 Score=114.09 Aligned_cols=371 Identities=11% Similarity=0.010 Sum_probs=209.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048235 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLW 137 (455)
Q Consensus 58 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 137 (455)
.+|+.-...|.+.+.++-|..+|...++-- +.+...|......--..|..+....+|++.....+.....|-.....+.
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 455555556666666666666666665532 2244455555444445566666666666666665555566666666666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 048235 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217 (455)
Q Consensus 138 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 217 (455)
..|++..|..++.+..+.. +.+...|..-+.....+..++.|..+|.+.... .|+..+|..-+...--.++.++|.+
T Consensus 596 ~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred hcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 6666666666666666553 224445555555556666666666666665553 3455555555555555666666666
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHH
Q 048235 218 IFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDL 296 (455)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a 296 (455)
++++..+..+.-...|..+...+-+.++.+.|...|..-.+. .| .+..|..|...--+.|.+-.|
T Consensus 673 llEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--------------cP~~ipLWllLakleEk~~~~~rA 738 (913)
T KOG0495|consen 673 LLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--------------CPNSIPLWLLLAKLEEKDGQLVRA 738 (913)
T ss_pred HHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--------------CCCCchHHHHHHHHHHHhcchhhH
Confidence 666666555555566666666666666666666666554442 24 455565555556666666677
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCC
Q 048235 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVS 376 (455)
Q Consensus 297 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 376 (455)
..++++.+-.+.. +...|...|+.-.+.|..+.|..+..+.++.++... -++.+.+..--+.++-..+...+++-..+
T Consensus 739 R~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg-~LWaEaI~le~~~~rkTks~DALkkce~d 816 (913)
T KOG0495|consen 739 RSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSG-LLWAEAIWLEPRPQRKTKSIDALKKCEHD 816 (913)
T ss_pred HHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccc-hhHHHHHHhccCcccchHHHHHHHhccCC
Confidence 7777666654422 344566666666677777777766666666654332 12222222222444444445555544433
Q ss_pred CCccccHHHHHHHHhhhcccCCcchHHHHHHHhccccccccCCCchhHHHHHHhHHhhhhccCCcc-cccCCCCcccCCC
Q 048235 377 GSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQSPAP-VVNLTGTPLYSSI 455 (455)
Q Consensus 377 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~ 455 (455)
+ .+...+...+....+.+.+.+=+.+.++ .+|++.+++..+--.+...|.-++...+.+ =...+|+.|..|+
T Consensus 817 p------hVllaia~lfw~e~k~~kar~Wf~Ravk-~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~ 889 (913)
T KOG0495|consen 817 P------HVLLAIAKLFWSEKKIEKAREWFERAVK-KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQ 889 (913)
T ss_pred c------hhHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHH
Confidence 3 2222222222233333344444444444 777777777777777777776554444432 4556677776653
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.8e-13 Score=125.87 Aligned_cols=288 Identities=11% Similarity=0.087 Sum_probs=181.5
Q ss_pred ChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHhhHHHHH
Q 048235 22 HIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ--KPSATTYGLVM 99 (455)
Q Consensus 22 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~ 99 (455)
+..+|+..|+.... ......+....+..+|...+++++|..+|+.+++... .-+..+|.+.+
T Consensus 334 ~~~~A~~~~~klp~----------------h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L 397 (638)
T KOG1126|consen 334 NCREALNLFEKLPS----------------HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL 397 (638)
T ss_pred HHHHHHHHHHhhHH----------------hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence 45667777777442 2233345556666777777777777777777776421 11566666665
Q ss_pred HHHHHcCChhHHHHHH-HHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048235 100 EVMLACGKYNLVYEFF-RKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178 (455)
Q Consensus 100 ~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 178 (455)
.-+- + +-++..+ +.+....+..+.+|.++..+|.-.++.+.|++.|++..+.+ +-...+|+.+..-+.....+|
T Consensus 398 WHLq---~-~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d 472 (638)
T KOG1126|consen 398 WHLQ---D-EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFD 472 (638)
T ss_pred HHHH---h-hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHH
Confidence 4221 1 1122222 22333344566777777777777777777777777776654 224666776766677777777
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048235 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258 (455)
Q Consensus 179 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 258 (455)
.|...|+.......+ +-..|--|...|.+.++++.|+-.|+...+..|.+.+....+...+-+.|+.++|+++++++..
T Consensus 473 ~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 473 KAMKSFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred hHHHHHHhhhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 777777766654322 3344455666777777777777777777766666677777777777777777777777777776
Q ss_pred cccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHH
Q 048235 259 DSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA-KRHLRMILDASRAGKVELLEITWE 336 (455)
Q Consensus 259 ~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~ 336 (455)
.. | |+.+--.-+..+...++.++|+..++++++ +.|+. ..|..+...|.+-|+.+.|..-|.
T Consensus 552 ld--------------~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 552 LD--------------PKNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred cC--------------CCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 43 3 444444455566666777777777777777 44553 344555555777777777777777
Q ss_pred HHhhcCCCCCh
Q 048235 337 HLARADRITPP 347 (455)
Q Consensus 337 ~~~~~~~~~~~ 347 (455)
.+.+.++...+
T Consensus 616 ~A~~ldpkg~~ 626 (638)
T KOG1126|consen 616 WALDLDPKGAQ 626 (638)
T ss_pred HHhcCCCccch
Confidence 77666655443
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.3e-12 Score=115.17 Aligned_cols=347 Identities=15% Similarity=0.086 Sum_probs=246.9
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccc-----------cccccccccCCCCCCCH-hHHH-HHHHHHHhc
Q 048235 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKK-----------FKTGTLERWDPRLEPDI-VVYN-AVLNACVRR 70 (455)
Q Consensus 4 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~-~li~~~~~~ 70 (455)
..|..-+-.....+-+.|....|+..|.......+-. ..-..+..+..+.+.|. ..-. .+..++-..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 3444444444455666777888888777765321000 00000111112222221 1111 123455556
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCChHHHHH
Q 048235 71 KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI---PNALAYKVLVNTLWREGKTDEAVS 147 (455)
Q Consensus 71 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~ 147 (455)
...++++.-...+...|.+-+...-+....+.-...+++.|+.+|+.+.+..| .|..+|+.++-+-..... +.
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk----Ls 316 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK----LS 316 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH----HH
Confidence 67788888888888888776666666666667788999999999999998876 588888888755433222 12
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048235 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227 (455)
Q Consensus 148 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 227 (455)
.+.+-...--+--+.|+..+.+.|+-.++.++|...|++..+.+.+ ....|+.+.+-|...++...|.+.++...+..|
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p 395 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP 395 (559)
T ss_pred HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc
Confidence 2222111111223457788889999999999999999999998755 688899999999999999999999999999899
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048235 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306 (455)
Q Consensus 228 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 306 (455)
.|-..|-.|.++|.-.+.+.=|+-.|++..+ .+| |...|.+|..+|.+.++.++|++.|.+....
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--------------~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALE--------------LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--------------cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998 457 8999999999999999999999999999996
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc----CCCCChHhHHH-HHHH--HhhccchHHHHHHhh
Q 048235 307 GLHFNAKRHLRMILDASRAGKVELLEITWEHLARA----DRITPPALIKE-RFCN--RLENKDYGSAISCLV 371 (455)
Q Consensus 307 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~-~~~~--~~~~~~~~~A~~~~~ 371 (455)
|-. +...+..+...|-+-++..+|.+.|+..++. +...+ .++.. ++.. ..+.+++++|..+..
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~-~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD-ETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch-HHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 643 5678999999999999999999988876542 22333 22222 2211 137777777766443
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=9.2e-12 Score=118.45 Aligned_cols=328 Identities=12% Similarity=0.030 Sum_probs=254.9
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh
Q 048235 15 VTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATT 94 (455)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 94 (455)
..+.-.|++++|.+++.++.+ ..+.....|-+|...|-..|+.+.+...+-..-..... |...
T Consensus 147 N~lfarg~~eeA~~i~~EvIk----------------qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~ 209 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIK----------------QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYEL 209 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHH----------------hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHH
Confidence 334445999999999999985 34778899999999999999999998877555544333 6788
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHH
Q 048235 95 YGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA----LYYDLARC 170 (455)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~l~~~ 170 (455)
|..+.....+.|+++.|.-+|.++.+..+++...+---+..|-+.|+...|...|.++.....+.|.. +....++.
T Consensus 210 W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 210 WKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 99998989999999999999999999988888888888899999999999999999999876433322 22335666
Q ss_pred HHhcCCHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------------------
Q 048235 171 LCSAGKCEEALMQMDKICKVA-NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF------------------------ 225 (455)
Q Consensus 171 ~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------------------ 225 (455)
+...++.+.|.+.++.....+ -..+...++.++..+.+...++.|......+...
T Consensus 290 ~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 290 FITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE 369 (895)
T ss_pred HHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence 777888899999998877632 2345667888889999999999998888777551
Q ss_pred ----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC--cHHHHHHHHHHHHHcCCHHHHHHH
Q 048235 226 ----CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP--DIYTFNTMLDACAAEKRWDDLELV 299 (455)
Q Consensus 226 ----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~ 299 (455)
..++..+ .-+.-++...+..+....+.....+.+ +.| +...|.-+..+|...|++.+|+.+
T Consensus 370 ~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n------------~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 370 VGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDN------------VWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred CCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhc------------CChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 2233333 123334445555555555666666665 444 567889999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHH-hhccchHHHHHHhhhcC
Q 048235 300 YKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNR-LENKDYGSAISCLVSHP 374 (455)
Q Consensus 300 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~ 374 (455)
|..+......-+...|..+..+|...|.++.|.+.++.++...+.+.+.. ..+..+ .+.|+.++|++.+..+.
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~R--i~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDAR--ITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhh--hhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999854444577888899999999999999999999999998887743 334444 48999999999998754
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=1.8e-11 Score=112.42 Aligned_cols=376 Identities=11% Similarity=0.046 Sum_probs=294.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048235 8 VAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG 87 (455)
Q Consensus 8 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 87 (455)
.||..-...|.+.+.++-|..+|.... +..+.+...|......=-..|..++...+|++....-
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~al----------------qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~ 580 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHAL----------------QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC 580 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHH----------------hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 467777788888999999999999988 3557778899888888778899999999999999873
Q ss_pred CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048235 88 QKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167 (455)
Q Consensus 88 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 167 (455)
.+ ....|.....-+-..|+...|..++.+.-+..+.+...|-+-+.......+++.|..+|.+.... .|+...|.--
T Consensus 581 pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs 657 (913)
T KOG0495|consen 581 PK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKS 657 (913)
T ss_pred Cc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHH
Confidence 33 56666666777788899999999999999888889999999999999999999999999988775 4666667666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChh
Q 048235 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFE 247 (455)
Q Consensus 168 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 247 (455)
+......+..++|.+++++..+.- +.-...|..+.+.+-+.++++.|...|..-.+.+|..+..|..|...=-+.|+.-
T Consensus 658 ~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~ 736 (913)
T KOG0495|consen 658 ANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLV 736 (913)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchh
Confidence 666677899999999999988863 3346788999999999999999999999888778888999999999888999999
Q ss_pred HHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048235 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327 (455)
Q Consensus 248 ~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 327 (455)
+|..++++..-.+ +-+...|...|+.-.+.|+.+.|..++.+..+. ++-+...|.--|....+.++
T Consensus 737 rAR~ildrarlkN-------------Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 737 RARSILDRARLKN-------------PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred hHHHHHHHHHhcC-------------CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCccc
Confidence 9999999998876 237899999999999999999999999888874 33344455555665666666
Q ss_pred hHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcchHHHHHH
Q 048235 328 VELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLH 407 (455)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 407 (455)
-..+...+.+.. -.| .++..+........+++.|.+.|..+...++. ....|..++..++.+|..+...+.+.
T Consensus 803 kTks~DALkkce----~dp-hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d--~GD~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 803 KTKSIDALKKCE----HDP-HVLLAIAKLFWSEKKIEKAREWFERAVKKDPD--NGDAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred chHHHHHHHhcc----CCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc--cchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 555555544432 223 22333333334778899999999987654433 34889888886666665454444454
Q ss_pred HhccccccccCCCchhHH
Q 048235 408 EASSSLTTRNGSPYPVLQ 425 (455)
Q Consensus 408 ~~~~~~~p~~~~~~~~l~ 425 (455)
+... .+|.+...+...+
T Consensus 876 ~c~~-~EP~hG~~W~avS 892 (913)
T KOG0495|consen 876 KCET-AEPTHGELWQAVS 892 (913)
T ss_pred HHhc-cCCCCCcHHHHHh
Confidence 4444 7899887776554
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=5.5e-12 Score=117.49 Aligned_cols=284 Identities=8% Similarity=0.010 Sum_probs=204.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHH-HHHHHHHHhcCChHHHHHH
Q 048235 70 RKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAY-KVLVNTLWREGKTDEAVSA 148 (455)
Q Consensus 70 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~ 148 (455)
.|+++.|.+.+....+..-.| ...|.....+..+.|+++.|...+.++.+..+.+.... -.....+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 599999998887765542222 22233334555789999999999999877544222222 2336788889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048235 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV-------VSYTGLIQACLDSGNIQNAAYIFNQ 221 (455)
Q Consensus 149 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~ 221 (455)
++++.+.. +-++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 99998876 445677788899999999999999999999988755322 2333444444455666777778887
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048235 222 MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301 (455)
Q Consensus 222 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 301 (455)
+....+.++.....+...+...|+.++|.+++++..+.. |+.... ++.+....++.+++.+..+
T Consensus 255 lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--------------~~~~l~--~l~~~l~~~~~~~al~~~e 318 (398)
T PRK10747 255 QSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--------------YDERLV--LLIPRLKTNNPEQLEKVLR 318 (398)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------CCHHHH--HHHhhccCCChHHHHHHHH
Confidence 766566788888999999999999999999999988743 555322 2334445688999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcC
Q 048235 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHP 374 (455)
Q Consensus 302 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 374 (455)
...+... -|...+..+-..|.+.|++++|.+.|+...+..+.... ...+....-+.|+.++|.+++++..
T Consensus 319 ~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~--~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 319 QQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD--YAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8887432 23456777788889999999999999999887644332 2333333448899999998888653
No 40
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=1.2e-11 Score=104.25 Aligned_cols=221 Identities=13% Similarity=0.128 Sum_probs=104.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-C---CHHHHHHHHHHHHhcCChHHHH
Q 048235 71 KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-P---NALAYKVLVNTLWREGKTDEAV 146 (455)
Q Consensus 71 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~---~~~~~~~li~~~~~~g~~~~a~ 146 (455)
++.++|.++|-+|.+.... +..+..+|-+.|.+.|..|.|+.+.+.+..+.. + -..+...|..-|...|-+|.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4445555555555543221 333334444555555555555555555544311 0 1122333444455555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048235 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL----VVSYTGLIQACLDSGNIQNAAYIFNQM 222 (455)
Q Consensus 147 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~ 222 (455)
.+|..+.+.+.. -......|+..|-...+|++|+++-+++.+.+.++. ...|--|...+....+.+.|...+.+.
T Consensus 128 ~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 555555443311 122334455555555555555555555555443332 233444455555555555555555555
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048235 223 KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302 (455)
Q Consensus 223 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 302 (455)
.+..+..+..-..+.+.+...|+++.|++.++...+.+ ..--..+...|..+|.+.|+.++...++.+
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn------------~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN------------PEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC------------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44344444444445555555555555555555555544 111234444555555555555555555555
Q ss_pred HHH
Q 048235 303 MLH 305 (455)
Q Consensus 303 m~~ 305 (455)
+.+
T Consensus 275 ~~~ 277 (389)
T COG2956 275 AME 277 (389)
T ss_pred HHH
Confidence 555
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=1.3e-11 Score=104.03 Aligned_cols=287 Identities=9% Similarity=0.037 Sum_probs=204.7
Q ss_pred HcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHH
Q 048235 104 ACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG-IVGS--AALYYDLARCLCSAGKCEEA 180 (455)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a 180 (455)
-..+.++|.++|-.|.+..+.+..+--+|.+.|-+.|..+.|+++.+.+.++. .+.+ ......|.+-|...|-+|.|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 45788999999999988766677777788899999999999999999888762 2222 23455688889999999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHH
Q 048235 181 LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPN----LVTCNIMVKAYLEHGLFEEAMKLFQE 255 (455)
Q Consensus 181 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~ 255 (455)
+++|..+.+.+.- -......|+..|-...+|++|+++-+++.... .+. ...|.-|...+....+++.|..++.+
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999998886532 45677888999999999999999998886541 111 23466788888888999999999999
Q ss_pred HHhcccccchhhccCCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 048235 256 MAEDSNHINREYDKKGLVIPD-IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEIT 334 (455)
Q Consensus 256 m~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 334 (455)
..+.+ |+ +..=-.+.+.+...|++..|.+.++.+.+.+...-..+...+..+|.+.|+.++....
T Consensus 206 Alqa~--------------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 206 ALQAD--------------KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred HHhhC--------------ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 98865 53 3343455678889999999999999999876544456778888999999999999999
Q ss_pred HHHHhhcCCCCChHhHHHHHHHHh-hccchHHHHHHhh-hcCCCCCccccHHHHHHHHhhhcc---cCCcchHHHHHHHh
Q 048235 335 WEHLARADRITPPALIKERFCNRL-ENKDYGSAISCLV-SHPVSGSPEFSRNAWLKFFKENSQ---HFGQDTLIQLLHEA 409 (455)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~ 409 (455)
+..+.+...-... ...+..++ .....+.|...+. .....|. ...+..++...+. .+...+......++
T Consensus 272 L~~~~~~~~g~~~---~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt----~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 272 LRRAMETNTGADA---ELMLADLIELQEGIDAAQAYLTRQLRRKPT----MRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred HHHHHHccCCccH---HHHHHHHHHHhhChHHHHHHHHHHHhhCCc----HHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 9998877644332 22333333 3444555555444 3444442 3666666664222 22233444444444
Q ss_pred ccc
Q 048235 410 SSS 412 (455)
Q Consensus 410 ~~~ 412 (455)
+-+
T Consensus 345 vge 347 (389)
T COG2956 345 VGE 347 (389)
T ss_pred HHH
Confidence 443
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.57 E-value=2.9e-11 Score=113.27 Aligned_cols=294 Identities=7% Similarity=-0.065 Sum_probs=193.9
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-HHHHHHHHH
Q 048235 59 VYNAVLNACV--RRKQWEGAFWVLQQLKQQGQKPS-ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPN-ALAYKVLVN 134 (455)
Q Consensus 59 ~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~li~ 134 (455)
.+..+.++.. ..|+++.|.+.+.+..+.. |+ ...+-....+..+.|+.+.|.+.+.+..+..+.+ ..+.-....
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH
Confidence 3444444433 5789999999998877653 33 3333444567778899999999999887655422 234444678
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH---HhcCC
Q 048235 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC---LDSGN 211 (455)
Q Consensus 135 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~---~~~~~ 211 (455)
.+...|+++.|...++.+.+.. +-+......+...+...|++++|.+.+..+.+.+..+.......-..++ ...+.
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999998876 3356677788889999999999999999999886543222211111111 22222
Q ss_pred HHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHH-HHHHH-
Q 048235 212 IQNAAYIFNQMKNF----CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF-NTMLD- 285 (455)
Q Consensus 212 ~~~a~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~-~~li~- 285 (455)
.+.+.+.+..+... .+.+...+..+...+...|+.++|.+++++..+.. ||.... ..++.
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--------------pd~~~~~~~~l~~ 306 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--------------GDDRAISLPLCLP 306 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--------------CCcccchhHHHHH
Confidence 22223344333332 33588888888999999999999999999998854 544321 01222
Q ss_pred -HHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHH--HhhcCCCCChHhHHHHHHHHhh
Q 048235 286 -ACAAEKRWDDLELVYKRMLHHGLHFNA---KRHLRMILDASRAGKVELLEITWEH--LARADRITPPALIKERFCNRLE 359 (455)
Q Consensus 286 -~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 359 (455)
.....++.+.+.+.++...+. .|+. ....++-..|.+.|++++|.+.|+. ..+..+.+ .....+...+.+
T Consensus 307 ~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~--~~~~~La~ll~~ 382 (409)
T TIGR00540 307 IPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA--NDLAMAADAFDQ 382 (409)
T ss_pred hhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH--HHHHHHHHHHHH
Confidence 233457778888888887773 3333 4555677778899999999999994 44443322 223344444448
Q ss_pred ccchHHHHHHhhhc
Q 048235 360 NKDYGSAISCLVSH 373 (455)
Q Consensus 360 ~~~~~~A~~~~~~~ 373 (455)
.|+.++|.++.++.
T Consensus 383 ~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 383 AGDKAEAAAMRQDS 396 (409)
T ss_pred cCCHHHHHHHHHHH
Confidence 89999998877754
No 43
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=1.2e-10 Score=101.23 Aligned_cols=284 Identities=12% Similarity=0.073 Sum_probs=188.3
Q ss_pred cCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048235 20 AGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM 99 (455)
Q Consensus 20 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 99 (455)
.|++.+|.++..+-.+ ..+.....|-.-..+--+.|+.+.+-..+.+..+..-.++....-+..
T Consensus 97 eG~~~qAEkl~~rnae----------------~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltra 160 (400)
T COG3071 97 EGDFQQAEKLLRRNAE----------------HGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRA 160 (400)
T ss_pred cCcHHHHHHHHHHhhh----------------cCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 4777777777777553 223344555555666667777888877777777654445556666666
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHH
Q 048235 100 EVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA-------ALYYDLARCLC 172 (455)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~l~~~~~ 172 (455)
+.....|+.+.|..-..++....+.+..+......+|.+.|++.....++..+.+.|.-.+. .+|..+++-..
T Consensus 161 rlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 161 RLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred HHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 67777777788877777777777777777777788888888888888888888777765553 34555555444
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhcCChhHHHH
Q 048235 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMK 251 (455)
Q Consensus 173 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~ 251 (455)
..+..+.-...++...+. .+.++..-.+++.-+..+|+.++|.++.++..+. ..|+ -...-.+.+-++...-.+
T Consensus 241 ~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k 315 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIK 315 (400)
T ss_pred ccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHH
Confidence 444455444455444333 2334555566677777777777777777666443 3333 122233455666666666
Q ss_pred HHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 048235 252 LFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELL 331 (455)
Q Consensus 252 ~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 331 (455)
..++..+.. +-++..+.+|...|.+.+.|.+|.+.|+...+ ..|+..+|..+..++.+.|+..+|
T Consensus 316 ~~e~~l~~h-------------~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 316 AAEKWLKQH-------------PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred HHHHHHHhC-------------CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHH
Confidence 666655532 22556777788888888888888888887666 457777888888888888888888
Q ss_pred HHHHHHHh
Q 048235 332 EITWEHLA 339 (455)
Q Consensus 332 ~~~~~~~~ 339 (455)
.++.++..
T Consensus 381 ~~~r~e~L 388 (400)
T COG3071 381 EQVRREAL 388 (400)
T ss_pred HHHHHHHH
Confidence 88777765
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=2.2e-12 Score=118.85 Aligned_cols=275 Identities=13% Similarity=0.100 Sum_probs=165.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCChHHHHHH
Q 048235 72 QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI---PNALAYKVLVNTLWREGKTDEAVSA 148 (455)
Q Consensus 72 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~ 148 (455)
+.++|+..|...... +.-+......+.++|...+++++|+.+|+.+.+..+ .+...|.+.+-.+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 356677777774443 333445556666777777777777777777766544 466677766655432 112222
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048235 149 V-EDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227 (455)
Q Consensus 149 ~-~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 227 (455)
+ +.+.+.+ +-.+.+|.++..+|.-.++.+.|++.|++..+.... ...+|+.+..-+....++|.|...|+......+
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 2222222 334667777777777777777777777777765422 567777777777777777777777777665333
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048235 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306 (455)
Q Consensus 228 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 306 (455)
.+-..|--+.-.|.+.++++.|.-.|+++.+-+ | +.+....+...+-+.|+.++|+.+++++...
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--------------P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--------------PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL 552 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--------------ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc
Confidence 444444455666777777777777777777743 5 5556666666777777777777777777763
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHH-hhccchHHHHHHh
Q 048235 307 GLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNR-LENKDYGSAISCL 370 (455)
Q Consensus 307 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~ 370 (455)
..+ |+..-..-...+...+++++|+..++++.+.-+. ++.+..++... -+.|+.+.|+.-+
T Consensus 553 d~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~--es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 553 DPK-NPLCKYHRASILFSLGRYVEALQELEELKELVPQ--ESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred CCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc--hHHHHHHHHHHHHHHccchHHHHhh
Confidence 322 2333333344455667777777777777654422 22222233222 2666666666533
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4.5e-11 Score=105.64 Aligned_cols=294 Identities=11% Similarity=0.066 Sum_probs=225.9
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCH
Q 048235 15 VTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK--PSA 92 (455)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~ 92 (455)
.++-...+.+++++-.+.... .|.+.+...-+....+.....++++|..+|+++.+..+- -|.
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~---------------~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dm 299 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSS---------------VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDM 299 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---------------ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhH
Confidence 345555677777777777764 555656555555556667789999999999999997421 267
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048235 93 TTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172 (455)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 172 (455)
.+|+.++-. +..+-.. --+-+.+..-..--+.|+..+.+-|.-.++.+.|...|+..++.+ +.....|+.+..-|.
T Consensus 300 dlySN~LYv--~~~~skL-s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyv 375 (559)
T KOG1155|consen 300 DLYSNVLYV--KNDKSKL-SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYV 375 (559)
T ss_pred HHHhHHHHH--HhhhHHH-HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHH
Confidence 888877643 3322211 111112222222356788888899999999999999999999987 334667888999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 048235 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKL 252 (455)
Q Consensus 173 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 252 (455)
...+...|.+-++...+..+. |-..|-.|.++|.-.+...-|+-.|++..+..|.|...|.+|..+|.+.++.++|.+.
T Consensus 376 EmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKC 454 (559)
T KOG1155|consen 376 EMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKC 454 (559)
T ss_pred HhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999998644 8899999999999999999999999999887888999999999999999999999999
Q ss_pred HHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCHHHHHH--HHHHHHhcC
Q 048235 253 FQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH----HGLHFNAKRHLR--MILDASRAG 326 (455)
Q Consensus 253 ~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~~~~~~~--ll~~~~~~g 326 (455)
|++....| ..+...+..|...|-+.++..+|...|..-++ .|..-+...... |..-+.+.+
T Consensus 455 ykrai~~~-------------dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~ 521 (559)
T KOG1155|consen 455 YKRAILLG-------------DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMK 521 (559)
T ss_pred HHHHHhcc-------------ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhc
Confidence 99999976 34678899999999999999999999988776 233322222222 333468899
Q ss_pred ChHHHHHHHHHHhhc
Q 048235 327 KVELLEITWEHLARA 341 (455)
Q Consensus 327 ~~~~a~~~~~~~~~~ 341 (455)
++++|..+......-
T Consensus 522 ~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 522 DFDEASYYATLVLKG 536 (559)
T ss_pred chHHHHHHHHHHhcC
Confidence 999998877776543
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=6e-10 Score=98.91 Aligned_cols=354 Identities=12% Similarity=0.100 Sum_probs=213.4
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 048235 3 SYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQ 82 (455)
Q Consensus 3 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 82 (455)
.+|+..+|++.|..-.+-...+.|..+++...- +.|++.+|-.....=.+.|.+..|..+|+.
T Consensus 170 w~P~eqaW~sfI~fElRykeieraR~IYerfV~-----------------~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 170 WEPDEQAWLSFIKFELRYKEIERARSIYERFVL-----------------VHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-----------------ecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 345555555555555555555555555554431 134555554444444445555555555544
Q ss_pred HHHc-CC-CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhcCChHHHHHHH--------H
Q 048235 83 LKQQ-GQ-KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPN--ALAYKVLVNTLWREGKTDEAVSAV--------E 150 (455)
Q Consensus 83 m~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~--------~ 150 (455)
..+. |- ..+...|.+....-.++..++.|.-+|.-.....+.+ ...|..+...--+-|+.....++. +
T Consensus 233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 4431 10 0112222222222233444445555554444443322 334444444333444433333222 2
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH------HHHHHHHHHH---HhcCCHHHHHHHHHH
Q 048235 151 DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV------VSYTGLIQAC---LDSGNIQNAAYIFNQ 221 (455)
Q Consensus 151 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~------~~~~~li~~~---~~~~~~~~a~~~~~~ 221 (455)
.+.+.+ +-|-.+|-..++.-...|+.+...++|++....-++.+. .+|..+=.++ ....+++.+.++|+.
T Consensus 313 ~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 313 KEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 222222 334455666666667789999999999988876433221 2232222222 356888999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHH----hcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 048235 222 MKNFCSPNLVTCNIMVKAYL----EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297 (455)
Q Consensus 222 ~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 297 (455)
..+.+|....||.-+--.|+ ++.+...|.+++...+. ..|-..+|...|..-.+.++++.+.
T Consensus 392 ~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--------------~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 392 CLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--------------KCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred HHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--------------cCCchhHHHHHHHHHHHHhhHHHHH
Confidence 88877777777766655554 57888999999988776 5599999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHH-hhccchHHHHHHhhhcCCC
Q 048235 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNR-LENKDYGSAISCLVSHPVS 376 (455)
Q Consensus 298 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~ 376 (455)
+++++.++.+.. +..++......-...|+.+.|..+|+-.+.......+.++...+... +..|.++.|..+++....-
T Consensus 458 kLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 458 KLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 999999995422 44566666666678899999999999998777666554444444333 5899999999988876643
Q ss_pred CCccccHHHHHHHHhh
Q 048235 377 GSPEFSRNAWLKFFKE 392 (455)
Q Consensus 377 ~~~~~~~~~~~~l~~~ 392 (455)
... ..+|-.+...
T Consensus 537 t~h---~kvWisFA~f 549 (677)
T KOG1915|consen 537 TQH---VKVWISFAKF 549 (677)
T ss_pred ccc---chHHHhHHHH
Confidence 322 1578777664
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=99.52 E-value=4.2e-11 Score=116.51 Aligned_cols=232 Identities=11% Similarity=0.056 Sum_probs=128.4
Q ss_pred HhhHHHHHHHHHh-----cCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHh---------cCC
Q 048235 7 TVAYRSIAVTLGQ-----AGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVR---------RKQ 72 (455)
Q Consensus 7 ~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~~~ 72 (455)
..+|...+.+... .+.+++|++.|++..+. .+.+...|..+..++.. .++
T Consensus 256 ~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l----------------dP~~a~a~~~La~~~~~~~~~g~~~~~~~ 319 (553)
T PRK12370 256 IDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM----------------SPNSIAPYCALAECYLSMAQMGIFDKQNA 319 (553)
T ss_pred hHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc----------------CCccHHHHHHHHHHHHHHHHcCCcccchH
Confidence 4455555555321 23467888888888753 23345566655554432 233
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048235 73 WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM 152 (455)
Q Consensus 73 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 152 (455)
+++|...+++..+.+.. +...+..+..++...|++++|...|++.....+.+..++..+..++...|++++|+..+++.
T Consensus 320 ~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 56666666666665433 45555556566666666666666666666666556666666666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 048235 153 ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVT 232 (455)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 232 (455)
.+.+.. +...+..++..+...|++++|...+++......+-+...+..+..++...|++++|...+.++....+.+...
T Consensus 399 l~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~ 477 (553)
T PRK12370 399 LKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIA 477 (553)
T ss_pred HhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHH
Confidence 665422 1222222333344456666666666665544322233445555555666666666666666654433333444
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 048235 233 CNIMVKAYLEHGLFEEAMKLFQEMAE 258 (455)
Q Consensus 233 ~~~li~~~~~~~~~~~a~~~~~~m~~ 258 (455)
.+.+...|+..| ++|...++.+.+
T Consensus 478 ~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 478 VNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHhccH--HHHHHHHHHHHH
Confidence 444445555555 355555555444
No 48
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=7.1e-11 Score=105.07 Aligned_cols=388 Identities=11% Similarity=0.050 Sum_probs=241.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048235 10 YRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPD-IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ 88 (455)
Q Consensus 10 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 88 (455)
+.....-|-++|++++|++.|.+.... .|| +..|...-.+|...|+|+++.+--...++.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l-----------------~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl-- 178 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL-----------------CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL-- 178 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc-----------------CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--
Confidence 445556678899999999999999864 677 778888888999999999988877777764
Q ss_pred CCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-C--CCCCCHHH
Q 048235 89 KPS-ATTYGLVMEVMLACGKYNLVYEFFRKVQK-SYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER-R--GIVGSAAL 163 (455)
Q Consensus 89 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~--~~~~~~~~ 163 (455)
.|+ +..+.--.+++-..|++++|+.=..-+.- .+..+..+--.+=+.+-+ .|+.-..+-.+ . -+.|+...
T Consensus 179 ~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~f 253 (606)
T KOG0547|consen 179 NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATF 253 (606)
T ss_pred CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHH
Confidence 333 33333344556666666665432221111 011111111111111111 11111111111 1 12233322
Q ss_pred HHHHHHHHH-----------------------h-----cCCHHHHHHHHHHHHHc-CCCCc-----------HHHHHHHH
Q 048235 164 YYDLARCLC-----------------------S-----AGKCEEALMQMDKICKV-ANKPL-----------VVSYTGLI 203 (455)
Q Consensus 164 ~~~l~~~~~-----------------------~-----~g~~~~a~~~~~~m~~~-~~~~~-----------~~~~~~li 203 (455)
..+....+. . ...+..|.+.+.+-... ...++ ..+...-.
T Consensus 254 i~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 254 IASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred HHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 222222211 0 01222232222221110 00111 11122222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHH
Q 048235 204 QACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNT 282 (455)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~ 282 (455)
..+.-.|+.-.|..-|+......+.+...|.-+...|....+.++..+.|.+....+ | |+.+|..
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--------------p~n~dvYyH 399 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD--------------PENPDVYYH 399 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC--------------CCCCchhHh
Confidence 234456888999999999988766666668888999999999999999999999854 5 7788888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHh-hc
Q 048235 283 MLDACAAEKRWDDLELVYKRMLHHGLHFN-AKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRL-EN 360 (455)
Q Consensus 283 li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 360 (455)
=.+.+.-.+++++|..=|++.++ +.|+ ...|..+--+.-|.+++++++..|++..+..|..|. ...++..++ .+
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~E--vy~~fAeiLtDq 475 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPE--VYNLFAEILTDQ 475 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch--HHHHHHHHHhhH
Confidence 88888888999999999999998 5554 345555555557889999999999999998887775 556666665 89
Q ss_pred cchHHHHHHhhhcC-CCCCc-----cccHHHHHHHHhhhcccCCcc-hHHHHHHHhccccccccCCCchhHHHHHHhHHh
Q 048235 361 KDYGSAISCLVSHP-VSGSP-----EFSRNAWLKFFKENSQHFGQD-TLIQLLHEASSSLTTRNGSPYPVLQNLISSCKD 433 (455)
Q Consensus 361 ~~~~~A~~~~~~~~-~~~~~-----~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 433 (455)
++++.|++.++... ..+.. .....+..+++-.+ =..+ ..+....+++.++||..-.+|..|+.+-.++|+
T Consensus 476 qqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q---wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 476 QQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ---WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred HhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc---hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence 99999999887643 33321 11224445555422 2233 444444555555999999999999999999999
Q ss_pred hhhccCCcc
Q 048235 434 FLRTQSPAP 442 (455)
Q Consensus 434 ~~~a~~~~~ 442 (455)
.++|.++.+
T Consensus 553 i~eAielFE 561 (606)
T KOG0547|consen 553 IDEAIELFE 561 (606)
T ss_pred HHHHHHHHH
Confidence 998887644
No 49
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=8.3e-11 Score=103.67 Aligned_cols=62 Identities=18% Similarity=0.160 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048235 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG 87 (455)
Q Consensus 9 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 87 (455)
..+.+...+.+.|+++.|+..|+...+. .|+..+--.|+-++..-|+-+...+.|.+|..-.
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~-----------------~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip 339 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE-----------------APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIP 339 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh-----------------CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCC
Confidence 3455556678899999999999988753 6776654445555566788889999999997753
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.49 E-value=7e-11 Score=102.27 Aligned_cols=203 Identities=12% Similarity=0.075 Sum_probs=174.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 048235 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLV 133 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 133 (455)
......+..+...+...|++++|...+++..+.... +...+..+...+...|+++.|.+.+++.....+.+...+..+.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 106 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYG 106 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 344678888999999999999999999999876432 5778888889999999999999999999888777888999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 048235 134 NTLWREGKTDEAVSAVEDMERRGI-VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI 212 (455)
Q Consensus 134 ~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 212 (455)
..+...|++++|...+++..+... ......+..+..++...|++++|...+.+..+.... +...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence 999999999999999999987532 223456677888999999999999999998887533 567788899999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048235 213 QNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258 (455)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 258 (455)
++|...+++.....+.+...+..+...+...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999998776566777888888999999999999999888765
No 51
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.48 E-value=2.9e-10 Score=107.13 Aligned_cols=295 Identities=12% Similarity=0.085 Sum_probs=208.9
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh
Q 048235 14 AVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSAT 93 (455)
Q Consensus 14 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 93 (455)
...+...|++++|++.++.-.. .+.............+.+.|+.++|..+|..+.+.++. |..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~----------------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~ 73 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK----------------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYD 73 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh----------------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHH
Confidence 4456888999999999988653 33444566777788999999999999999999998653 555
Q ss_pred hHHHHHHHHHHc-----CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHH
Q 048235 94 TYGLVMEVMLAC-----GKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKT-DEAVSAVEDMERRGIVGSAALYYDL 167 (455)
Q Consensus 94 ~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~l 167 (455)
-|..+..+..-. .+.+...++++++....+. ..+...+.-.+.....+ ..+...+..+...|+++ +|+.|
T Consensus 74 Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~-s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~l 149 (517)
T PF12569_consen 74 YYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPR-SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNL 149 (517)
T ss_pred HHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcc-ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHH
Confidence 555555554222 2467778889988776642 22222222122222223 34456667777888655 56666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC--------------CCCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 048235 168 ARCLCSAGKCEEALMQMDKICKVA--------------NKPLV--VSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV 231 (455)
Q Consensus 168 ~~~~~~~g~~~~a~~~~~~m~~~~--------------~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 231 (455)
-..|....+..-..+++....... -+|+. .++.-+.+.|-..|++++|++++++..+..|-.+.
T Consensus 150 k~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~e 229 (517)
T PF12569_consen 150 KPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVE 229 (517)
T ss_pred HHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH
Confidence 666766666666666666654321 12333 35566778888999999999999999887666688
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 048235 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311 (455)
Q Consensus 232 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 311 (455)
.|..-.+.+-..|++.+|.+.++...... .-|...=+..+..+.+.|++++|.+++....+.+..|.
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD-------------~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~ 296 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDEARELD-------------LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPL 296 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCC-------------hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcc
Confidence 89999999999999999999999998854 23667777778888999999999999999888665333
Q ss_pred HH------HH--HHHHHHHHhcCChHHHHHHHHHHhhcC
Q 048235 312 AK------RH--LRMILDASRAGKVELLEITWEHLARAD 342 (455)
Q Consensus 312 ~~------~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~ 342 (455)
.. .| .-...+|.+.|++..|++.|..+.+..
T Consensus 297 ~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 297 SNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 21 12 224556889999999988888776554
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=1.2e-10 Score=100.70 Aligned_cols=197 Identities=13% Similarity=0.034 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 048235 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC 206 (455)
Q Consensus 127 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 206 (455)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Confidence 344444444445555555555555444432 122334444444445555555555555544443322 333444445555
Q ss_pred HhcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHH
Q 048235 207 LDSGNIQNAAYIFNQMKNF--CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284 (455)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li 284 (455)
...|++++|...+++.... .+.....+..+..++...|++++|.+.+.+..... +.+...+..+.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~~~~la 176 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-------------PQRPESLLELA 176 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------cCChHHHHHHH
Confidence 5555555555555554432 11223344445555555566666666665555532 11344455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048235 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339 (455)
Q Consensus 285 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 339 (455)
..+...|++++|...+++..+. ...+...+..+...+...|+.++|..+++.+.
T Consensus 177 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 177 ELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555566666666666655554 12233344444444555566666655555544
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.47 E-value=2.2e-10 Score=111.51 Aligned_cols=214 Identities=7% Similarity=-0.044 Sum_probs=125.9
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048235 108 YNLVYEFFRKVQKSYIPNALAYKVLVNTLWR---------EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE 178 (455)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 178 (455)
++.|..+|++.....+.+...|..+..++.. .+++++|...+++..+.+ +.+...+..+...+...|+++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHH
Confidence 4567777777766665556666555554432 233667777777776664 334555666666666777777
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048235 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258 (455)
Q Consensus 179 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 258 (455)
+|...+++..+.++. +...+..+...+...|++++|...+++..+..+.+...+..++..+...|++++|...++++..
T Consensus 356 ~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 356 VGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 777777777666532 4556666667777777777777777777664444443433444445556777777777777665
Q ss_pred cccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChHHHHHHHH
Q 048235 259 DSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH-LRMILDASRAGKVELLEITWE 336 (455)
Q Consensus 259 ~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~ 336 (455)
.. .| +...+..+..++...|+.++|...+.++... .|+.... +.+...|...| +.|...++
T Consensus 435 ~~-------------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~ 497 (553)
T PRK12370 435 QH-------------LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIR 497 (553)
T ss_pred hc-------------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHH
Confidence 42 23 3344555566666777777777777665542 2333332 22333345455 35655555
Q ss_pred HHhh
Q 048235 337 HLAR 340 (455)
Q Consensus 337 ~~~~ 340 (455)
.+.+
T Consensus 498 ~ll~ 501 (553)
T PRK12370 498 EFLE 501 (553)
T ss_pred HHHH
Confidence 5544
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.46 E-value=7.1e-12 Score=118.72 Aligned_cols=264 Identities=17% Similarity=0.200 Sum_probs=130.9
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 048235 2 SSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQ 81 (455)
Q Consensus 2 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 81 (455)
|+.|+..||.++|.-||..|+.+.|- +|..|.- ...+.+...++.++.+..+.++.+.+.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~---------------ksLpv~e~vf~~lv~sh~~And~Enpk---- 79 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEI---------------KSLPVREGVFRGLVASHKEANDAENPK---- 79 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhc---------------ccccccchhHHHHHhcccccccccCCC----
Confidence 56667777777777777777766666 6666653 233445556666666666666555443
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCC
Q 048235 82 QLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER-RGIVGS 160 (455)
Q Consensus 82 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~ 160 (455)
.|...||+.|..+|...||+.. |+...+ -...++..+...|.-.....++-.+.- .+..||
T Consensus 80 -------ep~aDtyt~Ll~ayr~hGDli~----fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpd 141 (1088)
T KOG4318|consen 80 -------EPLADTYTNLLKAYRIHGDLIL----FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPD 141 (1088)
T ss_pred -------CCchhHHHHHHHHHHhccchHH----HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchh
Confidence 4566666666666666666543 111111 011111222222222222222221111 112222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Q 048235 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANK-PLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLVTCNIMVK 238 (455)
Q Consensus 161 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~li~ 238 (455)
..+ .+......|-++.+++++..+...... |..+ +++-+... .....++....+... .|+..+|.+++.
T Consensus 142 a~n---~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~ 212 (1088)
T KOG4318|consen 142 AEN---AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLK 212 (1088)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHH
Confidence 221 222233344455555444433222111 1111 12222211 122222222222221 467777777777
Q ss_pred HHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048235 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRM 318 (455)
Q Consensus 239 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 318 (455)
+-..+|+.+.|..++.+|.+.| .+.+..-|..|+-+ .++...+..++.-|.+.|+.|+..|+...
T Consensus 213 ~alaag~~d~Ak~ll~emke~g------------fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 213 RALAAGDVDGAKNLLYEMKEKG------------FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred HHHhcCchhhHHHHHHHHHHcC------------CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 7777777777777777777776 55555555555544 56666666667777777777777777666
Q ss_pred HHHHHhcCC
Q 048235 319 ILDASRAGK 327 (455)
Q Consensus 319 l~~~~~~g~ 327 (455)
+..+...|.
T Consensus 278 vip~l~N~~ 286 (1088)
T KOG4318|consen 278 VIPQLSNGQ 286 (1088)
T ss_pred HHhhhcchh
Confidence 666655444
No 55
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=3.9e-11 Score=105.72 Aligned_cols=204 Identities=8% Similarity=-0.022 Sum_probs=120.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHH
Q 048235 209 SGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288 (455)
Q Consensus 209 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 288 (455)
.|++++|.+.+++.......-....-.+.-.+-..|+.++|++.|-++... ...+......+.+.|-
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-------------l~nn~evl~qianiye 569 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-------------LLNNAEVLVQIANIYE 569 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-------------HHhhHHHHHHHHHHHH
Confidence 356666666666665421111111122233455667777777777666543 2345666666777777
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCh-HhHHHHHHHHhhccchHHHH
Q 048235 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPP-ALIKERFCNRLENKDYGSAI 367 (455)
Q Consensus 289 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~ 367 (455)
...+...|++++.+..+. ++.|+.....+...|-+.|+-..|.+..-.--+-. |.+ .++..+...++...-++.|+
T Consensus 570 ~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryf--p~nie~iewl~ayyidtqf~ekai 646 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYF--PCNIETIEWLAAYYIDTQFSEKAI 646 (840)
T ss_pred HhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccccc--CcchHHHHHHHHHHHhhHHHHHHH
Confidence 777777777777666552 33456677777777888888777776544332222 222 22333334445777788888
Q ss_pred HHhhhcC-CCCCccccHHHHHHHHhhhccc-CCcchHHHHHHHhccccccccCCCchhHHHHHHhHHh
Q 048235 368 SCLVSHP-VSGSPEFSRNAWLKFFKENSQH-FGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKD 433 (455)
Q Consensus 368 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 433 (455)
.+++++. ..|+. .-|.-|+...+.+ |.+..+.+.+...-. ..|++.+..-+|..+.-..|.
T Consensus 647 ~y~ekaaliqp~~----~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 647 NYFEKAALIQPNQ----SKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhcCccH----HHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence 8888654 44433 7787776642222 334466666655555 678888887777776665553
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.46 E-value=1e-09 Score=95.64 Aligned_cols=269 Identities=14% Similarity=0.127 Sum_probs=218.7
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048235 7 TVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ 86 (455)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 86 (455)
...|..-..+-.+.|+.+.+-..+.+..+. ...++...+-+..+.....|+++.|..-++++.+.
T Consensus 118 ~l~~l~aA~AA~qrgd~~~an~yL~eaae~---------------~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~ 182 (400)
T COG3071 118 VLAYLLAAEAAQQRGDEDRANRYLAEAAEL---------------AGDDTLAVELTRARLLLNRRDYPAARENVDQLLEM 182 (400)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhcc---------------CCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 345666777788899999999999999863 22456677788888899999999999999999998
Q ss_pred CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCH--------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 048235 87 GQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNA--------LAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158 (455)
Q Consensus 87 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 158 (455)
+.. +........++|.+.|++..+..++..+.+.+..+. .+|+.+++-....+..+.-...++..... .+
T Consensus 183 ~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr 260 (400)
T COG3071 183 TPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LR 260 (400)
T ss_pred CcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hh
Confidence 665 678888899999999999999999999998766322 46777777666666666666666665444 34
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048235 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVK 238 (455)
Q Consensus 159 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 238 (455)
.++..-.+++.-+...|+.++|.++.++..+.+..|+ -...-.+.+.++.+.-++..+.-....+.++..+.+|..
T Consensus 261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~ 336 (400)
T COG3071 261 NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGR 336 (400)
T ss_pred cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 5566667788889999999999999999999887766 222334567788888888888777667777789999999
Q ss_pred HHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 048235 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHF 310 (455)
Q Consensus 239 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 310 (455)
.|.+++.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++....-..|
T Consensus 337 L~~k~~~w~kA~~~leaAl~~--------------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 337 LALKNKLWGKASEALEAALKL--------------RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHhhHHHHHHHHHHHHHhc--------------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 999999999999999998884 5999999999999999999999999999877543333
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=1.7e-11 Score=103.50 Aligned_cols=234 Identities=12% Similarity=-0.024 Sum_probs=190.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 048235 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWR 138 (455)
Q Consensus 59 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 138 (455)
--+.+.++|.+.|-+.+|.+.|+.-.+. .|-..||..|-++|.+..+...|+.++.+-.+..+-++....-+.+.+-.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 3467788899999999999998888776 55677888888999999999999999998888777777777778888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 048235 139 EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218 (455)
Q Consensus 139 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 218 (455)
.++.++|.++++...+.. +.++.....+...|.-.++++.|+++++++.+.|+. +...|+.+.-+|.-.++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 899999999999888764 345555666777788889999999999999999877 788888888888899999999999
Q ss_pred HHHHHhc-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHH
Q 048235 219 FNQMKNF-CSPN--LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295 (455)
Q Consensus 219 ~~~~~~~-~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 295 (455)
|++.... ..|+ ...|-.+.......|++..|.+.|+-.+.++ .-+...++.|.-.-.+.|++++
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-------------~~h~ealnNLavL~~r~G~i~~ 447 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-------------AQHGEALNNLAVLAARSGDILG 447 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-------------cchHHHHHhHHHHHhhcCchHH
Confidence 9888665 2243 4467778778888899999999999888765 2356788888888888999999
Q ss_pred HHHHHHHHHHcCCCCC
Q 048235 296 LELVYKRMLHHGLHFN 311 (455)
Q Consensus 296 a~~~~~~m~~~~~~p~ 311 (455)
|..+++...+ +.|+
T Consensus 448 Arsll~~A~s--~~P~ 461 (478)
T KOG1129|consen 448 ARSLLNAAKS--VMPD 461 (478)
T ss_pred HHHHHHHhhh--hCcc
Confidence 9999988877 4455
No 58
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=4e-11 Score=101.27 Aligned_cols=230 Identities=14% Similarity=0.077 Sum_probs=201.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048235 10 YRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK 89 (455)
Q Consensus 10 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 89 (455)
-+.+..+|.+.|.+.+|...|+.-... .|-+.||-.|-++|.+-.++..|+.+|.+-.+. .
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q-----------------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--f 286 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ-----------------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--F 286 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc-----------------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--C
Confidence 356788999999999999999998754 788899999999999999999999999998875 4
Q ss_pred CCHhhH-HHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048235 90 PSATTY-GLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168 (455)
Q Consensus 90 p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 168 (455)
|-..|| ....+.+-..++.++|.++++.+.+..+.++.+...+...|.-.++++.|+..++++.+.|+. ++..|+.+.
T Consensus 287 P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~Nig 365 (478)
T KOG1129|consen 287 PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIG 365 (478)
T ss_pred CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHH
Confidence 555554 556788889999999999999999988888888888888999999999999999999999964 677889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh
Q 048235 169 RCLCSAGKCEEALMQMDKICKVANKPL--VVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLF 246 (455)
Q Consensus 169 ~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 246 (455)
-+|.-.+++|-++.-|.+....-..|+ ..+|-.+.......|++..|.+.|+-.....+.+...++.|.-.-.+.|+.
T Consensus 366 LCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 366 LCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDI 445 (478)
T ss_pred HHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCch
Confidence 999999999999999998877654444 456777888888999999999999998887888899999999999999999
Q ss_pred hHHHHHHHHHHhc
Q 048235 247 EEAMKLFQEMAED 259 (455)
Q Consensus 247 ~~a~~~~~~m~~~ 259 (455)
++|..++......
T Consensus 446 ~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 446 LGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHHHHhhhh
Confidence 9999999998874
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=7.3e-13 Score=83.13 Aligned_cols=50 Identities=26% Similarity=0.626 Sum_probs=48.3
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHH
Q 048235 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104 (455)
Q Consensus 55 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 104 (455)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999874
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.4e-09 Score=98.80 Aligned_cols=295 Identities=13% Similarity=0.091 Sum_probs=187.6
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHH
Q 048235 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKV 131 (455)
Q Consensus 52 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 131 (455)
+...++.....-..-+...+++.+..++++...+.. ++....+..-|..+...|+..+-..+-.++.+..|....+|-+
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~a 317 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFA 317 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhh
Confidence 335566666666667777777777777777777653 3355555555666777777777777777777777777777777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 048235 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211 (455)
Q Consensus 132 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 211 (455)
+.--|.-.|+..+|.+.|.+....+.. -...|-.+...|+-.|..++|+..+...-+.-.. ...-+.-+.--|.+.++
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhcc
Confidence 777777777777777777766554321 1234666777777777777777777665553211 11112223445667777
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcC
Q 048235 212 IQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291 (455)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 291 (455)
++.|.+.|.+.....|.|+...+-+.......+.+.+|..+|+..+..-.. .... ...-..+++.|..+|.+.+
T Consensus 396 ~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~-----~~~e-~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS-----VLNE-KIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh-----cccc-ccchhHHHHhHHHHHHHHh
Confidence 777777777777666777777777776666777777777777776622100 0000 0113456677777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHh
Q 048235 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRL 358 (455)
Q Consensus 292 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (455)
.+++|+..+++.+.... -+..++.++.-.|...|+++.|.+.|.+.+...+ .+.+...++..++
T Consensus 470 ~~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p--~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALALKP--DNIFISELLKLAI 533 (611)
T ss_pred hHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC--ccHHHHHHHHHHH
Confidence 77777777777776322 2455666666667777777777777777765543 2333445554444
No 61
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=6e-08 Score=86.53 Aligned_cols=348 Identities=11% Similarity=0.037 Sum_probs=226.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC---CCHHHHH
Q 048235 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI---PNALAYK 130 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~ 130 (455)
.|+..+|++.|+.=.+.+.++.|..+|++..- +.|+..+|.-..+.--++|+...+..+|+....... .+...+.
T Consensus 171 ~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfv 248 (677)
T KOG1915|consen 171 EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFV 248 (677)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 67777777777777777777777777777664 356777777776666677777777777776654322 1223344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH--------HHHHHHcCCCCcHHHHH
Q 048235 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGS--AALYYDLARCLCSAGKCEEALMQ--------MDKICKVANKPLVVSYT 200 (455)
Q Consensus 131 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~--------~~~m~~~~~~~~~~~~~ 200 (455)
+...--.++..++.|.-+|.-.++.- +.+ ...|..+...=-+-|+.....++ ++.+.+.+ +-|-.+|-
T Consensus 249 aFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWf 326 (677)
T KOG1915|consen 249 AFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWF 326 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHH
Confidence 44444445566777777776666552 222 23344444433344554433322 23334443 33667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH--HHHHHHH-----H---HHhcCChhHHHHHHHHHHhcccccchhhccC
Q 048235 201 GLIQACLDSGNIQNAAYIFNQMKNFCSPNLV--TCNIMVK-----A---YLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270 (455)
Q Consensus 201 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~li~-----~---~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 270 (455)
-.+..-...|+.+...++|++....++|-.. .|.-.|- + =....+++.+.++|+..++
T Consensus 327 dylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~------------ 394 (677)
T KOG1915|consen 327 DYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD------------ 394 (677)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh------------
Confidence 7788888889999999999999888777432 1222111 1 1356899999999999988
Q ss_pred CCCCC-cHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 048235 271 GLVIP-DIYTFNTM----LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRIT 345 (455)
Q Consensus 271 ~~~~p-~~~~~~~l----i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 345 (455)
+.| ...||..+ ...-.++.++..|.+++...+. ..|...++...|..-.+.+.++....+++..++-+|..
T Consensus 395 --lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~ 470 (677)
T KOG1915|consen 395 --LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPEN 470 (677)
T ss_pred --hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHh
Confidence 345 45555544 3344577899999999987664 77888899999999999999999999999999887655
Q ss_pred ChHhHHHHHHHH-hhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHhccccccccCCCchhH
Q 048235 346 PPALIKERFCNR-LENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVL 424 (455)
Q Consensus 346 ~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l 424 (455)
... ..-++.+ ...|+.+.|..+++-+...|.-+..-.+|.+.+..-...+.. +.+...-+.++...+ +..++...
T Consensus 471 c~~--W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~-ekaR~LYerlL~rt~-h~kvWisF 546 (677)
T KOG1915|consen 471 CYA--WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEF-EKARALYERLLDRTQ-HVKVWISF 546 (677)
T ss_pred hHH--HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchH-HHHHHHHHHHHHhcc-cchHHHhH
Confidence 432 2233333 378999999999998777675555568999988843333333 444445555553433 33344444
Q ss_pred H
Q 048235 425 Q 425 (455)
Q Consensus 425 ~ 425 (455)
+
T Consensus 547 A 547 (677)
T KOG1915|consen 547 A 547 (677)
T ss_pred H
Confidence 3
No 62
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=5e-09 Score=93.55 Aligned_cols=59 Identities=17% Similarity=0.257 Sum_probs=43.9
Q ss_pred CCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCC-HhHHHHHHHHHHhcCCHHHHH
Q 048235 2 SSYPD-TVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPD-IVVYNAVLNACVRRKQWEGAF 77 (455)
Q Consensus 2 g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~ 77 (455)
.+.|| ++.|.....+|...|+++++.+--...++. .|+ +-++..-.+++-..|++.+|+
T Consensus 143 ~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl-----------------~P~Y~KAl~RRA~A~E~lg~~~eal 203 (606)
T KOG0547|consen 143 ELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL-----------------NPDYVKALLRRASAHEQLGKFDEAL 203 (606)
T ss_pred hcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc-----------------CcHHHHHHHHHHHHHHhhccHHHHH
Confidence 45688 888999999999999999999988888764 343 345555556666667766654
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.36 E-value=4.4e-09 Score=99.27 Aligned_cols=287 Identities=14% Similarity=0.106 Sum_probs=206.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---
Q 048235 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREG--- 140 (455)
Q Consensus 64 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g--- 140 (455)
...+...|++++|++.+..-... +......+......+.+.|+.++|..++..+....|.+..-|..+..+..-..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 34567899999999999775544 44345666777888999999999999999999998888888888888874333
Q ss_pred --ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 048235 141 --KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC-EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217 (455)
Q Consensus 141 --~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 217 (455)
+.+....+++++...- |.......+.-.+..-..+ ..+...+..+...|++ .+|+.|-..|.......-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 5677788999887764 3332222222222221222 2344566667778865 367777777776666666666
Q ss_pred HHHHHHhc---------------CCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCc-HHH
Q 048235 218 IFNQMKNF---------------CSPNLV--TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD-IYT 279 (455)
Q Consensus 218 ~~~~~~~~---------------~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~-~~~ 279 (455)
++...... .+|+.. ++..+...|-..|++++|++++++.+++. |+ +..
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--------------Pt~~el 230 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--------------PTLVEL 230 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------------CCcHHH
Confidence 66665321 234443 44566788889999999999999999964 75 778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChH------hH--H
Q 048235 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPA------LI--K 351 (455)
Q Consensus 280 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~ 351 (455)
|..-...+-+.|++.+|.+.++..++.+.. |...-+..+..+.++|++++|.+++....+.+..+... +| .
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence 888899999999999999999999996543 66666667777899999999999999998777532221 11 2
Q ss_pred HHHHHHhhccchHHHHHHhh
Q 048235 352 ERFCNRLENKDYGSAISCLV 371 (455)
Q Consensus 352 ~~~~~~~~~~~~~~A~~~~~ 371 (455)
+...+..+.|++..|++-+.
T Consensus 310 e~a~a~~r~~~~~~ALk~~~ 329 (517)
T PF12569_consen 310 ECAEAYLRQGDYGLALKRFH 329 (517)
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 22333458999999987544
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=7.2e-09 Score=90.67 Aligned_cols=274 Identities=13% Similarity=0.063 Sum_probs=150.5
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHH
Q 048235 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKV 131 (455)
Q Consensus 52 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 131 (455)
..+.|+.....+...+...|+.++|...|++.+..++- +....-...-.+.+.|+++....+...+-.....+...|-.
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV 305 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV 305 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence 34556666666666666666666666666666543211 11111111122335566665555555444332223333433
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 048235 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211 (455)
Q Consensus 132 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 211 (455)
-.......+++..|+.+-++..+.+ +-+...|-.-...+...+++++|.-.|+......+ -+...|.-|+..|...|+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhch
Confidence 3444445566666666666655543 11233343344455566666666666666655432 256666667777777777
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHH-HHHH-hcCChhHHHHHHHHHHhcccccchhhccCCCCCCc-HHHHHHHHHHHH
Q 048235 212 IQNAAYIFNQMKNFCSPNLVTCNIMV-KAYL-EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD-IYTFNTMLDACA 288 (455)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~ 288 (455)
+.+|...-+...+..+.+..+.+.+. ..+. ....-++|.+++++.+. ..|+ ....+.+...|.
T Consensus 384 ~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--------------~~P~Y~~AV~~~AEL~~ 449 (564)
T KOG1174|consen 384 FKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--------------INPIYTPAVNLIAELCQ 449 (564)
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--------------cCCccHHHHHHHHHHHH
Confidence 66666665555444445555544432 1221 22233556666666655 3354 455566666677
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 048235 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI 344 (455)
Q Consensus 289 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 344 (455)
..|..+.++.++++... ..||...++.+-+.+...+.+++|++.|...+..+|.
T Consensus 450 ~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 450 VEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred hhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 77777777777776666 4466666666666666667777777777766655543
No 65
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.33 E-value=2e-10 Score=109.21 Aligned_cols=264 Identities=13% Similarity=0.130 Sum_probs=175.7
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHH
Q 048235 51 PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYK 130 (455)
Q Consensus 51 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 130 (455)
.|+.|+..||..+|.-||..|+.+.|- +|.-|.....+.+...|+.++......++.+.+. .|...+|.
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------ep~aDtyt 87 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------EPLADTYT 87 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------CCchhHHH
Confidence 567788888888888888888887777 7777777777777777888877777777766655 46777888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHHHhc
Q 048235 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC-KVANKPLVVSYTGLIQACLDS 209 (455)
Q Consensus 131 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~ 209 (455)
.|..+|...||+.. |+...+ -.-.+...+...|.-.....++..+. ..+.-||.. .++....-.
T Consensus 88 ~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~e 152 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLE 152 (1088)
T ss_pred HHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHH
Confidence 88888888887765 222222 12223344444554444444443322 122334432 234444556
Q ss_pred CCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHH
Q 048235 210 GNIQNAAYIFNQMKNF--CSPNLVTCNIMVKAYLEH-GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286 (455)
Q Consensus 210 ~~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 286 (455)
|-++.+++++..+... ..|... +++-+... ..+++-..+.+...+ .|++.+|.+++..
T Consensus 153 glwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---------------~~~s~~l~a~l~~ 213 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---------------APTSETLHAVLKR 213 (1088)
T ss_pred HHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---------------CCChHHHHHHHHH
Confidence 6777777777766432 222222 23333322 223333333333322 3899999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccc
Q 048235 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKD 362 (455)
Q Consensus 287 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (455)
-...|+.+.|..++.+|.+.|+..+..-|+.++.+ .++...+..++..|.+.+..|...+...+++..+..|.
T Consensus 214 alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 214 ALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999999999999999999999888888888766 88899999999999998888777777777766665433
No 66
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=8.4e-12 Score=78.28 Aligned_cols=50 Identities=40% Similarity=0.792 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHH
Q 048235 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289 (455)
Q Consensus 228 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 289 (455)
||..+||++|.+|++.|++++|.++|++|.+.| +.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g------------~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRG------------IKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC------------CCCCHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999 89999999999999975
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.3e-08 Score=92.61 Aligned_cols=287 Identities=9% Similarity=0.025 Sum_probs=208.6
Q ss_pred CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048235 87 GQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166 (455)
Q Consensus 87 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 166 (455)
+..-+......-.+-+...+++.+..++++.+....+++...+-.-|.++...|+..+-..+-.++.+.- +..+.+|-+
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 4455777777778888899999999999999999989888888888999999999999888888988874 455778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh
Q 048235 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLF 246 (455)
Q Consensus 167 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 246 (455)
+.-.|...|+.++|.+.|.+....... -...|-.+...|.-.+.-++|+..+....+..+-....+--+.--|.+.++.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccH
Confidence 998898999999999999988765432 3567888999999999999999999888665333333333445568889999
Q ss_pred hHHHHHHHHHHhcccccchhhccCCCCCCc-H--HHHHHHHH----HHHHc-CCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048235 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPD-I--YTFNTMLD----ACAAE-KRWDDLELVYKRMLHHGLHFNAKRHLRM 318 (455)
Q Consensus 247 ~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~-~--~~~~~li~----~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~l 318 (455)
+.|.++|.+..... |+ + .....++. -|... .-+..+....+....... .-..+++.+
T Consensus 397 kLAe~Ff~~A~ai~--------------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-~w~p~~~NL 461 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA--------------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-FWEPTLNNL 461 (611)
T ss_pred HHHHHHHHHHHhcC--------------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc-chhHHHHhH
Confidence 99999999988743 42 1 11111111 11111 113344444443333222 123478888
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcC-CCCCccccHHHHHHHHh
Q 048235 319 ILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHP-VSGSPEFSRNAWLKFFK 391 (455)
Q Consensus 319 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~l~~ 391 (455)
-.+|.+.+.+++|+..++..+...+..++. ...+.-...-.|+++.|++.+.+.. ..|............+.
T Consensus 462 GH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~-~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 462 GHAYRKLNKYEEAIDYYQKALLLSPKDAST-HASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCCchhH-HHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 899999999999999999999888777652 2223333347899999999998876 45544344455555554
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=5.6e-08 Score=85.24 Aligned_cols=314 Identities=12% Similarity=0.012 Sum_probs=214.5
Q ss_pred CCCHhhHHHHHHHHHH--cCChhHHHHHHHH--HHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HH
Q 048235 89 KPSATTYGLVMEVMLA--CGKYNLVYEFFRK--VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA-AL 163 (455)
Q Consensus 89 ~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~--~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~ 163 (455)
.|+..+....+.+++. .++...+...+-. .....+.|......+..++...|+.++|+..|++....+ |+. ..
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhh
Confidence 3444444444555443 3444444444433 344455688889999999999999999999999887654 332 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 048235 164 YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243 (455)
Q Consensus 164 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 243 (455)
.....-.+...|+.++...+...+....- -+...|-.-.......++++.|+.+-++..+..+.+...+..-...+...
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhc
Confidence 22333445678899888888877765431 12333333344455678899999999888876777777887777888899
Q ss_pred CChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HH
Q 048235 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI-LD 321 (455)
Q Consensus 244 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~ 321 (455)
|++++|.-.|+.... ..| +..+|.-|+..|...|++.+|.-+-+...+. +.-+..+...+- ..
T Consensus 348 ~R~~~A~IaFR~Aq~--------------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V 412 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQM--------------LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLV 412 (564)
T ss_pred cchHHHHHHHHHHHh--------------cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhccee
Confidence 999999999999887 456 7899999999999999999998888776662 223444444331 22
Q ss_pred H-HhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcc
Q 048235 322 A-SRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQD 400 (455)
Q Consensus 322 ~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 400 (455)
| .....-++|.++++.-+...|....++ ..........|..+.++.+++......+. ......+...+.-.+...
T Consensus 413 ~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV-~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D---~~LH~~Lgd~~~A~Ne~Q 488 (564)
T KOG1174|consen 413 LFPDPRMREKAKKFAEKSLKINPIYTPAV-NLIAELCQVEGPTKDIIKLLEKHLIIFPD---VNLHNHLGDIMRAQNEPQ 488 (564)
T ss_pred eccCchhHHHHHHHHHhhhccCCccHHHH-HHHHHHHHhhCccchHHHHHHHHHhhccc---cHHHHHHHHHHHHhhhHH
Confidence 2 334446889999999888887766654 22333344889999999999987644422 145555555555566666
Q ss_pred hHHHHHHHhccccccccCCCchhHH
Q 048235 401 TLIQLLHEASSSLTTRNGSPYPVLQ 425 (455)
Q Consensus 401 ~~~~~~~~~~~~~~p~~~~~~~~l~ 425 (455)
++++.+...+. ++|+|-.+.-.|-
T Consensus 489 ~am~~y~~ALr-~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 489 KAMEYYYKALR-QDPKSKRTLRGLR 512 (564)
T ss_pred HHHHHHHHHHh-cCccchHHHHHHH
Confidence 88888877666 9998876655543
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.28 E-value=1.2e-07 Score=87.82 Aligned_cols=319 Identities=11% Similarity=0.013 Sum_probs=205.0
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHH
Q 048235 51 PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYK 130 (455)
Q Consensus 51 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 130 (455)
.+...+.+.|+.+.-.+....++++|++.|......+.. |...+.-+.-.-++.++++.....-.++.+..+.....|.
T Consensus 69 r~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~ 147 (700)
T KOG1156|consen 69 RNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWI 147 (700)
T ss_pred ccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHH
Confidence 344667788999888888889999999999999887544 6777766666667888888888877777776666777888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 048235 131 VLVNTLWREGKTDEAVSAVEDMERRG-IVGSAALYYDLA------RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLI 203 (455)
Q Consensus 131 ~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 203 (455)
.+..++.-.|+...|..++++..+.. -.|+...|.... ......|..++|.+.+..-...-+. ....-..-.
T Consensus 148 ~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e~ka 226 (700)
T KOG1156|consen 148 GFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEETKA 226 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhhhHH
Confidence 88888888899999999998887764 345555544322 2234567777777766554433211 222233445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHH-HHHHH---------------------------
Q 048235 204 QACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAM-KLFQE--------------------------- 255 (455)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~--------------------------- 255 (455)
..+.+.+++++|..++..+....|.+...|-.+..++.+-.+.-+++ .+|..
T Consensus 227 ~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~ 306 (700)
T KOG1156|consen 227 DLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEI 306 (700)
T ss_pred HHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHH
Confidence 66677888888888888887766555555555555554222222222 33333
Q ss_pred -------HHhcccccch---------------------------------h-hccCCCCCCcHHHHH--HHHHHHHHcCC
Q 048235 256 -------MAEDSNHINR---------------------------------E-YDKKGLVIPDIYTFN--TMLDACAAEKR 292 (455)
Q Consensus 256 -------m~~~~~~~~~---------------------------------~-~~~~~~~~p~~~~~~--~li~~~~~~~~ 292 (455)
+.+.|+++.- . .+....-+|+...|+ .++..|-+.|+
T Consensus 307 vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~ 386 (700)
T KOG1156|consen 307 VDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD 386 (700)
T ss_pred HHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence 3333322111 0 001112245554444 45667788888
Q ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHH-HHHHHHhhccchHHHHHHh
Q 048235 293 WDDLELVYKRMLHHGLHFNAK-RHLRMILDASRAGKVELLEITWEHLARADRITPPALIK-ERFCNRLENKDYGSAISCL 370 (455)
Q Consensus 293 ~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~ 370 (455)
++.|..+++..+. -.|+.. -|..-.+.+.+.|++++|...+++..+.+. ++..+. .....++++++.++|.+++
T Consensus 387 ~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~--aDR~INsKcAKYmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 387 YEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT--ADRAINSKCAKYMLRANEIEEAEEVL 462 (700)
T ss_pred HHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHccccHHHHHHH
Confidence 8888888888777 345532 333344557788888888888888876553 333333 5555667888888888777
Q ss_pred hhcCC
Q 048235 371 VSHPV 375 (455)
Q Consensus 371 ~~~~~ 375 (455)
-....
T Consensus 463 skFTr 467 (700)
T KOG1156|consen 463 SKFTR 467 (700)
T ss_pred HHhhh
Confidence 65543
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=5.8e-09 Score=97.31 Aligned_cols=243 Identities=17% Similarity=0.143 Sum_probs=181.4
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHhc-----C--CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC
Q 048235 91 SATTYGLVMEVMLACGKYNLVYEFFRKVQKS-----Y--IPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERR-----GI 157 (455)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~ 157 (455)
-..+...+..+|...|+++.|+.++.+..+. + .+... ..+.+...|...+++++|..+|+++... |-
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3566777899999999999999999987654 1 13332 2334677889999999999999998753 21
Q ss_pred -CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 048235 158 -VG-SAALYYDLARCLCSAGKCEEALMQMDKICKV-----AN-KPL-VVSYTGLIQACLDSGNIQNAAYIFNQMKNF--- 225 (455)
Q Consensus 158 -~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 225 (455)
.| -..+++.|..+|.+.|++++|...+++..+. +. .|. ...++.+...|+..++++.|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 12 2467778888999999999998888775432 11 222 234677888899999999999999877442
Q ss_pred -CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCc-HHHHHHHHHHHHHcCCHHHHHHH
Q 048235 226 -CSP----NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD-IYTFNTMLDACAAEKRWDDLELV 299 (455)
Q Consensus 226 -~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~ 299 (455)
..+ -..+++.|...|...|++++|.++|++++... ....++..+. ...++.+...|.+.++..+|.++
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~------~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l 431 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL------RELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQL 431 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH------HhcccCcChhhhHHHHHHHHHHHHhcccchHHHH
Confidence 222 24678999999999999999999999987753 1122223343 56778889999999999999999
Q ss_pred HHHHHH----cCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048235 300 YKRMLH----HGL-HFN-AKRHLRMILDASRAGKVELLEITWEHLA 339 (455)
Q Consensus 300 ~~~m~~----~~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 339 (455)
|.+... .|. .|+ ..+|..|...|.+.|+++.|.++.+.+.
T Consensus 432 ~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 432 FEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 887654 332 233 3578889999999999999999988875
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.27 E-value=8.7e-08 Score=90.49 Aligned_cols=413 Identities=10% Similarity=-0.016 Sum_probs=251.6
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048235 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQL 83 (455)
Q Consensus 4 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 83 (455)
.-|...|..+--++...|+++.+.+.|++... +.--....|+.+-..|...|.-..|..+++.-
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~----------------~~~~~~e~w~~~als~saag~~s~Av~ll~~~ 383 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALP----------------FSFGEHERWYQLALSYSAAGSDSKAVNLLRES 383 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----------------hhhhhHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 45778888999999999999999999999873 33556788999999999999988899888877
Q ss_pred HHcCCCCCHhhHHHHH-HHHH-HcCChhHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHhc-----------CChHHH
Q 048235 84 KQQGQKPSATTYGLVM-EVML-ACGKYNLVYEFFRKVQKS-----YIPNALAYKVLVNTLWRE-----------GKTDEA 145 (455)
Q Consensus 84 ~~~~~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~li~~~~~~-----------g~~~~a 145 (455)
......|+..+-..++ ..|. +.+..++++.+-.++... +......|-.+.-+|... ....++
T Consensus 384 ~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ks 463 (799)
T KOG4162|consen 384 LKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKS 463 (799)
T ss_pred cccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHH
Confidence 6554335443333333 3333 456677777766666541 113445555555555432 224567
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048235 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225 (455)
Q Consensus 146 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 225 (455)
++.+++..+.+.. |+.....+.--|+..++.+.|++..++..+.+..-+...|..|.-.+...+++.+|+.+.+.....
T Consensus 464 lqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 464 LQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 7788888776532 333333345556778999999999999999876778899999999999999999999999887654
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhccc-----ccch----------hhccC-CCCCCcHHHHHHHHHHHHH
Q 048235 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSN-----HINR----------EYDKK-GLVIPDIYTFNTMLDACAA 289 (455)
Q Consensus 226 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~----------~~~~~-~~~~p~~~~~~~li~~~~~ 289 (455)
.+.|......-+..-..-++.++++.....++..-- ..+. ..... .+..-...++..+..-...
T Consensus 543 ~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~ 622 (799)
T KOG4162|consen 543 FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS 622 (799)
T ss_pred hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence 444333222223333335666666555444433210 0000 00000 0111123344444332221
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH--------HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhcc
Q 048235 290 EKRWDDLELVYKRMLHHGLHFNA--------KRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENK 361 (455)
Q Consensus 290 ~~~~~~a~~~~~~m~~~~~~p~~--------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (455)
.+ +.+..-.. +.+..+.|.. ..|......+.+.+..++|...+.+....++..+. .+..........|
T Consensus 623 ~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~-~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 623 QL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSAS-VYYLRGLLLEVKG 698 (799)
T ss_pred hh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHH-HHHHhhHHHHHHH
Confidence 11 11110000 2222222222 13344455578888999998888888776654432 2233334445889
Q ss_pred chHHHHHHhhhcC-CCCCccccHHHHHHHHhhhcccCCcc-hHHHHHHHhccccccccCCCchhHHHHHHhHHhhhhccC
Q 048235 362 DYGSAISCLVSHP-VSGSPEFSRNAWLKFFKENSQHFGQD-TLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQS 439 (455)
Q Consensus 362 ~~~~A~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 439 (455)
..++|.+.+..+. .+|++. ....++...+...|... .....+..-+.+++|.|.++|..||.++.++|+..+|..
T Consensus 699 ~~~EA~~af~~Al~ldP~hv---~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 699 QLEEAKEAFLVALALDPDHV---PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred hhHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 9999998887655 444443 33333444334555444 333335666666999999999999999999999976654
Q ss_pred C
Q 048235 440 P 440 (455)
Q Consensus 440 ~ 440 (455)
-
T Consensus 776 c 776 (799)
T KOG4162|consen 776 C 776 (799)
T ss_pred H
Confidence 3
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=3.2e-08 Score=88.40 Aligned_cols=219 Identities=13% Similarity=0.045 Sum_probs=160.8
Q ss_pred cCChhHHHHHHHHhhcCCccccccccccccCCCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 048235 20 AGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEP--DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGL 97 (455)
Q Consensus 20 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 97 (455)
.+..+.++.-+.++... ....| ....|..+...+...|++++|...|++..+..+. +...|+.
T Consensus 39 ~~~~e~~i~~~~~~l~~--------------~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~ 103 (296)
T PRK11189 39 TLQQEVILARLNQILAS--------------RDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNY 103 (296)
T ss_pred chHHHHHHHHHHHHHcc--------------ccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHH
Confidence 34556677777777642 11122 2466888888999999999999999999987544 6889999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048235 98 VMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177 (455)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 177 (455)
+...+...|+++.|...|++.....+.+..+|..+..++...|++++|++.|+...+.+ |+..........+...++.
T Consensus 104 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~ 181 (296)
T PRK11189 104 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDP 181 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCH
Confidence 99999999999999999999998877788999999999999999999999999998875 3322122222234457889
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHhcCChhHHH
Q 048235 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-------SPNLVTCNIMVKAYLEHGLFEEAM 250 (455)
Q Consensus 178 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~ 250 (455)
++|...+.+..... .|+...+ .+ .....|+...+ +.+..+.+.. +.....|..+...+...|++++|.
T Consensus 182 ~~A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~ 256 (296)
T PRK11189 182 KQAKENLKQRYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAA 256 (296)
T ss_pred HHHHHHHHHHHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 99999997755432 2332222 22 23345555444 3555554321 223467999999999999999999
Q ss_pred HHHHHHHhcc
Q 048235 251 KLFQEMAEDS 260 (455)
Q Consensus 251 ~~~~~m~~~~ 260 (455)
..|++..+.+
T Consensus 257 ~~~~~Al~~~ 266 (296)
T PRK11189 257 ALFKLALANN 266 (296)
T ss_pred HHHHHHHHhC
Confidence 9999999865
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.22 E-value=3e-08 Score=80.34 Aligned_cols=200 Identities=12% Similarity=0.072 Sum_probs=174.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048235 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLW 137 (455)
Q Consensus 58 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 137 (455)
.+...|.-.|...|++..|..-+++.++.... +..++..+...|-+.|+.+.|.+.|++.....+.+..+.|....-+|
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 45667778899999999999999999998654 67889999999999999999999999999988889999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 048235 138 REGKTDEAVSAVEDMERRGIV-GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA 216 (455)
Q Consensus 138 ~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 216 (455)
..|.+++|...|++....-.- .-..+|..+.-|..+.|+.+.|...|++..+.... ...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 999999999999998876322 23457788888889999999999999999987644 4567778889999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048235 217 YIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
..++.......++..+.-..|+.-...|+.+.+-+.=..+...
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999998887799999888899999999999888777776663
No 74
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.22 E-value=5.9e-07 Score=83.30 Aligned_cols=369 Identities=11% Similarity=0.090 Sum_probs=209.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048235 8 VAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG 87 (455)
Q Consensus 8 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 87 (455)
..|-..+..+.++|++.....+|+..+..- -+......|...+......+-++-+..+|++-++.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraL--------------pvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~- 167 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRAL--------------PVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV- 167 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhC--------------chHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc-
Confidence 345555666677788888888887766421 11122334555555444455555555555554432
Q ss_pred CCCCHhhHHHHHHHHHHcCChhHHHHHHHH--------------------------------------------HHhcCC
Q 048235 88 QKPSATTYGLVMEVMLACGKYNLVYEFFRK--------------------------------------------VQKSYI 123 (455)
Q Consensus 88 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~--------------------------------------------~~~~~~ 123 (455)
++..-.-.|..++..+++++|.+.+.. +.....
T Consensus 168 ---~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rft 244 (835)
T KOG2047|consen 168 ---APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFT 244 (835)
T ss_pred ---CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCc
Confidence 111233333333444444444443333 222222
Q ss_pred -CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------------------HHHH
Q 048235 124 -PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK----------------------CEEA 180 (455)
Q Consensus 124 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~----------------------~~~a 180 (455)
.-...|.+|.+.|.+.|.++.|..+|++....- .+..-|..+..+|+.-.. ++-.
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 122467777777778888888887777766542 223334444444432111 1112
Q ss_pred HHHHHHHHHcCC-----------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhc
Q 048235 181 LMQMDKICKVAN-----------KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP------NLVTCNIMVKAYLEH 243 (455)
Q Consensus 181 ~~~~~~m~~~~~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~li~~~~~~ 243 (455)
+.-|+.+..... +.++..|..-+. +..|+..+-..+|.+....+.| -...|..+.+.|-..
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhc
Confidence 222222221110 112222322222 2345666677777777654333 234688889999999
Q ss_pred CChhHHHHHHHHHHhcccccchhhccCCCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----------
Q 048235 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD---IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHF---------- 310 (455)
Q Consensus 244 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---------- 310 (455)
|+.+.|..+|++..+.. .+-- ..+|-.....-.+..+++.|.++++....-.-.|
T Consensus 401 ~~l~~aRvifeka~~V~------------y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVP------------YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred CcHHHHHHHHHHhhcCC------------ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 99999999999998864 2111 3456666666677888999999988876421111
Q ss_pred -------CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHh-hccchHHHHHHhhhcC--CCCCcc
Q 048235 311 -------NAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRL-ENKDYGSAISCLVSHP--VSGSPE 380 (455)
Q Consensus 311 -------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~--~~~~~~ 380 (455)
+...|..+++.....|-++....+++++.+..-..|. +..-++..+ +..-++++.+++++.. +..+.
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq--ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~- 545 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ--IIINYAMFLEEHKYFEESFKAYERGISLFKWPN- 545 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc-
Confidence 1123444555556778999999999999988777665 233444445 6778999999999754 34444
Q ss_pred ccHHHHHHHHhhhcccCCcc---hHHHHHHHhcccccc
Q 048235 381 FSRNAWLKFFKENSQHFGQD---TLIQLLHEASSSLTT 415 (455)
Q Consensus 381 ~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~p 415 (455)
-...|...+.-+..+-.+. .+..++.+.+. .=|
T Consensus 546 -v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cp 581 (835)
T KOG2047|consen 546 -VYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCP 581 (835)
T ss_pred -HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCC
Confidence 3488988877644443322 45555555555 445
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.22 E-value=2.4e-08 Score=89.16 Aligned_cols=232 Identities=14% Similarity=0.003 Sum_probs=157.0
Q ss_pred CCHHHHHHHHHHHHHcC-CCCC--HhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHH
Q 048235 71 KQWEGAFWVLQQLKQQG-QKPS--ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVS 147 (455)
Q Consensus 71 ~~~~~a~~~~~~m~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 147 (455)
+..+.++.-+.++.... ..|+ ...|..+...+...|+.+.|...|++.....+.+..+|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45667777777777542 2222 35577777788899999999999999988888888999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048235 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227 (455)
Q Consensus 148 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 227 (455)
.|++..+.. +-+..++..+..++...|++++|.+.++...+..+. +. ........+...+++++|...|.+......
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 999998865 234567777888888999999999999998886533 22 122222233456789999999976554333
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048235 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306 (455)
Q Consensus 228 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 306 (455)
++...+ .......|+...+ +.+..+.+.... .....| ....|..+...+.+.|++++|...|++..+.
T Consensus 197 ~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~-------~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 197 KEQWGW---NIVEFYLGKISEE-TLMERLKAGATD-------NTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred ccccHH---HHHHHHccCCCHH-HHHHHHHhcCCC-------cHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 332222 2233345666554 355555432100 000112 2457888888888999999999999988885
Q ss_pred CCCCCHHHHHH
Q 048235 307 GLHFNAKRHLR 317 (455)
Q Consensus 307 ~~~p~~~~~~~ 317 (455)
+. ||..-+..
T Consensus 266 ~~-~~~~e~~~ 275 (296)
T PRK11189 266 NV-YNFVEHRY 275 (296)
T ss_pred CC-chHHHHHH
Confidence 42 35444443
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.21 E-value=4e-08 Score=79.62 Aligned_cols=159 Identities=14% Similarity=0.113 Sum_probs=71.7
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048235 100 EVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179 (455)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 179 (455)
-.|.+.|+...|..-+++..+..+.+..+|..+...|-+.|+.+.|.+-|++..+.. +-+....|.....+|..|++++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCChHH
Confidence 344455555555555555554444444455555555555555555555555544432 1122333444444444455555
Q ss_pred HHHHHHHHHHcCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048235 180 ALMQMDKICKVANK-PLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258 (455)
Q Consensus 180 a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 258 (455)
|...|++....-.- --..+|..+.-+..+.|+++.|...|++..+..+....+.-.+.....+.|++-.|..+++....
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 55444444432111 11234444444444444444444444444444333444444444444444444444444444444
Q ss_pred c
Q 048235 259 D 259 (455)
Q Consensus 259 ~ 259 (455)
.
T Consensus 202 ~ 202 (250)
T COG3063 202 R 202 (250)
T ss_pred c
Confidence 3
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.18 E-value=2.7e-07 Score=85.48 Aligned_cols=304 Identities=13% Similarity=0.035 Sum_probs=190.8
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHhh-HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 048235 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ-KPSATT-YGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLV 133 (455)
Q Consensus 56 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 133 (455)
....|..+...+...|+.+.+...+.+..+... .++... .......+...|+++.|.+++++.....|.+...+.. .
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-H 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-h
Confidence 355677777777778888887777777665422 222211 2222334568899999999999998877766666653 2
Q ss_pred HHHHh----cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 048235 134 NTLWR----EGKTDEAVSAVEDMERRGIVGS-AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208 (455)
Q Consensus 134 ~~~~~----~g~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 208 (455)
..+.. .+..+.+.+.+.. .....|+ ......+...+...|++++|...+++..+..+. +...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHH
Confidence 23333 4455555555544 1122333 344455677888999999999999999987643 57788889999999
Q ss_pred cCCHHHHHHHHHHHHhcCC--CCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHH-H--
Q 048235 209 SGNIQNAAYIFNQMKNFCS--PNL--VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF-N-- 281 (455)
Q Consensus 209 ~~~~~~a~~~~~~~~~~~~--~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~-~-- 281 (455)
.|++++|...+++.....+ ++. ..|..+...+...|++++|..++++...... ..+..... +
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~-----------~~~~~~~~~~~~ 229 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA-----------ESDPALDLLDAA 229 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc-----------CCChHHHHhhHH
Confidence 9999999999999876533 332 2455788899999999999999999865430 11122211 2
Q ss_pred HHHHHHHHcCCHHHHHHH--HHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC------CChHhHH
Q 048235 282 TMLDACAAEKRWDDLELV--YKRMLHHGL--HFNAKRHLRMILDASRAGKVELLEITWEHLARADRI------TPPALIK 351 (455)
Q Consensus 282 ~li~~~~~~~~~~~a~~~--~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~ 351 (455)
.++.-+...|....+.++ +........ ............++...|+.+.|...++.+...... ....+..
T Consensus 230 ~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 309 (355)
T cd05804 230 SLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGL 309 (355)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhH
Confidence 223333444443333332 211111111 111122224566678999999999999988654322 1111222
Q ss_pred HHHHHH--hhccchHHHHHHhhhcC
Q 048235 352 ERFCNR--LENKDYGSAISCLVSHP 374 (455)
Q Consensus 352 ~~~~~~--~~~~~~~~A~~~~~~~~ 374 (455)
.++..+ ...|++++|.+.+....
T Consensus 310 ~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 310 PLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 233222 28899999999888653
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.17 E-value=4.1e-08 Score=91.77 Aligned_cols=247 Identities=20% Similarity=0.199 Sum_probs=182.1
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCCHhhH-HHHHHHHHHcCChhHHHHHHHHHHhc---
Q 048235 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ-----G-QKPSATTY-GLVMEVMLACGKYNLVYEFFRKVQKS--- 121 (455)
Q Consensus 52 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~--- 121 (455)
..+.-..+...+...|...|+++.|..++....+. | ..|...+. +.+...|...+++++|..+|+.+...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33444456666899999999999999999988764 2 12333333 34667889999999999999987532
Q ss_pred --CCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048235 122 --YIP---NALAYKVLVNTLWREGKTDEAVSAVEDMERR-----GIV-GSA-ALYYDLARCLCSAGKCEEALMQMDKICK 189 (455)
Q Consensus 122 --~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~-~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 189 (455)
|.. -..+++.|...|.+.|++++|...++...+. +.. |.. ..++.++..++..+++++|..++....+
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 232 3356777888999999999999888876542 221 222 3456678888899999999999987544
Q ss_pred c---CCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 048235 190 V---ANKPL----VVSYTGLIQACLDSGNIQNAAYIFNQMKNF--------CSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254 (455)
Q Consensus 190 ~---~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 254 (455)
. -+.++ ..+++.|...|.+.|++++|.++|+..... ..-....++.|...|.+.+++.+|.++|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 2 12222 578999999999999999999999988532 12224567888999999999999999998
Q ss_pred HHHhcccccchhhccCCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 255 EMAEDSNHINREYDKKGLVIPD-IYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 255 ~m~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
+..... + ..+.-.|+ ..+|..|...|...|+++.|.++.+.+..
T Consensus 434 ~~~~i~-~------~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 434 EAKDIM-K------LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHH-H------HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 765432 0 00113344 57899999999999999999999888763
No 79
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.15 E-value=1.7e-07 Score=88.57 Aligned_cols=344 Identities=13% Similarity=0.052 Sum_probs=215.1
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048235 81 QQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160 (455)
Q Consensus 81 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 160 (455)
.++....+.-+...|..+.-+...+|+++.+.+.|++...........|+.+...|...|.-..|..+++.-......|+
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps 391 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPS 391 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCC
Confidence 33344456668888999988999999999999999998877667788999999999999999999999987765543343
Q ss_pred -HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHc--CC--CCcHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHH
Q 048235 161 -AALYYDLARCLC-SAGKCEEALMQMDKICKV--AN--KPLVVSYTGLIQACLDS-----------GNIQNAAYIFNQMK 223 (455)
Q Consensus 161 -~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~~--~~--~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~~~ 223 (455)
...+-.....|. +.+..++++++-.+.... +. ......|..+.-+|... ....++.+.+++..
T Consensus 392 ~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av 471 (799)
T KOG4162|consen 392 DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV 471 (799)
T ss_pred cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH
Confidence 333322222232 457778887777776652 11 12244555555555432 12355677777776
Q ss_pred hcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048235 224 NFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303 (455)
Q Consensus 224 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 303 (455)
+..+.|+...--+.--|+..++.+.|.+..++..+.+ ..-+...|..|.-.+...+++.+|+.+.+..
T Consensus 472 ~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~------------~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 472 QFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALN------------RGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred hcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc------------CCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 6544454444445556788889999999999999875 3457888988888888889999999998877
Q ss_pred HH-cCCCC--------------C----HHHHHHHHHHHH------h---cC--------------ChHHHHHHHHHH---
Q 048235 304 LH-HGLHF--------------N----AKRHLRMILDAS------R---AG--------------KVELLEITWEHL--- 338 (455)
Q Consensus 304 ~~-~~~~p--------------~----~~~~~~ll~~~~------~---~g--------------~~~~a~~~~~~~--- 338 (455)
.. .|... | ..|...++...- . .| +..++.+....+
T Consensus 540 l~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 540 LEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred HHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 65 33200 0 011211111111 0 11 111111111111
Q ss_pred --------------hhcCCCC-Ch-------HhHHHHHHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhccc
Q 048235 339 --------------ARADRIT-PP-------ALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQH 396 (455)
Q Consensus 339 --------------~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 396 (455)
......+ |+ ..+........+.+..++|..++.++....+- ...+|.-.......+
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l--~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL--SASVYYLRGLLLEVK 697 (799)
T ss_pred HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh--hHHHHHHhhHHHHHH
Confidence 0000000 11 11111122223788899998877776543322 234444433333456
Q ss_pred CCcchHHHHHHHhccccccccCCCchhHHHHHHhHHhhhhccC
Q 048235 397 FGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQS 439 (455)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 439 (455)
+...|+.+.+...+. ++|+++.....|+.++.+.|+-.-++.
T Consensus 698 ~~~~EA~~af~~Al~-ldP~hv~s~~Ala~~lle~G~~~la~~ 739 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALA-LDPDHVPSMTALAELLLELGSPRLAEK 739 (799)
T ss_pred HhhHHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHhCCcchHHH
Confidence 666688877777776 999999999999999999997654443
No 80
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.14 E-value=2.4e-09 Score=94.21 Aligned_cols=256 Identities=16% Similarity=0.162 Sum_probs=161.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHH
Q 048235 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDE 144 (455)
Q Consensus 65 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 144 (455)
+-+.-.|++..++.-.+ ...............+.+++...|+.+.+. ..+.....|.......+...+....+-+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSSSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCCChhHHHHHHHHHHHhCccchHH
Confidence 44556788888886555 322222223455566778888899877543 44544445666666666555544344455
Q ss_pred HHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048235 145 AVSAVEDMERRGIVGSAALY-YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223 (455)
Q Consensus 145 a~~~~~~m~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 223 (455)
++.-+++.......++..++ ......+...|++++|+++++.- .+.......+..|.+.++++.|.+.++.|+
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55544443333333233233 33334556679999998887542 356677778899999999999999999998
Q ss_pred hcCCCCHHHHHHHHHHHH----hcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 048235 224 NFCSPNLVTCNIMVKAYL----EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELV 299 (455)
Q Consensus 224 ~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 299 (455)
+.. .|. +...+..++. ..+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.++
T Consensus 159 ~~~-eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-------------~~~t~~~lng~A~~~l~~~~~~eAe~~ 223 (290)
T PF04733_consen 159 QID-EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-------------FGSTPKLLNGLAVCHLQLGHYEEAEEL 223 (290)
T ss_dssp CCS-CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-------------S--SHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred hcC-CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-------------cCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 642 332 2333444333 344689999999998765 357888889999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHhhcCCCCC
Q 048235 300 YKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHLARADRITP 346 (455)
Q Consensus 300 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~ 346 (455)
+.+....+.. ++.+...++......|+. +.+.+++.++....+.+|
T Consensus 224 L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 224 LEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 9987764322 455666677777777877 677888888888776655
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.12 E-value=1.2e-06 Score=81.28 Aligned_cols=313 Identities=12% Similarity=0.000 Sum_probs=194.1
Q ss_pred CC-HhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHH
Q 048235 5 PD-TVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDI-VVYNAVLNACVRRKQWEGAFWVLQQ 82 (455)
Q Consensus 5 p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~ 82 (455)
|| ...|..+...+...|+.+.+.+.+....+. ....++. .........+...|++++|...+++
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~ 68 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQA--------------LAARATERERAHVEALSAWIAGDLPKALALLEQ 68 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHH--------------hccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44 345666777777788888887777776642 1111222 2222333456778999999999999
Q ss_pred HHHcCCCCCHhhHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 048235 83 LKQQGQKPSATTYGLVMEVMLA----CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV 158 (455)
Q Consensus 83 m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 158 (455)
..+..+. +...+.. ...+.. .+..+.+.+.+.......+........+...+...|++++|...+++..+.. +
T Consensus 69 ~l~~~P~-~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p 145 (355)
T cd05804 69 LLDDYPR-DLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-P 145 (355)
T ss_pred HHHHCCC-cHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C
Confidence 9886433 4434432 222222 3445555555554222222344555667788899999999999999999875 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Cc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCHHHH
Q 048235 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANK-PL--VVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS--PNLVTC 233 (455)
Q Consensus 159 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 233 (455)
.+...+..+...+...|++++|...+++....... |+ ...|..+...+...|++++|..++++.....+ +.....
T Consensus 146 ~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~ 225 (355)
T cd05804 146 DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDL 225 (355)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHH
Confidence 45667788899999999999999999988775432 23 23456788889999999999999999854311 222221
Q ss_pred -H--HHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-
Q 048235 234 -N--IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH- 309 (455)
Q Consensus 234 -~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~- 309 (455)
+ .++.-+...|....+.++ +.+...... ... .............++...|+.+.|..+++.+......
T Consensus 226 ~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~-----~~~--~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~ 297 (355)
T cd05804 226 LDAASLLWRLELAGHVDVGDRW-EDLADYAAW-----HFP--DHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSA 297 (355)
T ss_pred hhHHHHHHHHHhcCCCChHHHH-HHHHHHHHh-----hcC--cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 1 223333444544443333 222221100 000 0111222235667788899999999999998773221
Q ss_pred -----CCHHHHHHHHHH--HHhcCChHHHHHHHHHHhhcC
Q 048235 310 -----FNAKRHLRMILD--ASRAGKVELLEITWEHLARAD 342 (455)
Q Consensus 310 -----p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~ 342 (455)
....+-..++.+ +...|+.++|.+.+.......
T Consensus 298 ~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 298 DDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 011122333444 478999999999988876543
No 82
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.09 E-value=5.6e-06 Score=77.05 Aligned_cols=413 Identities=10% Similarity=0.077 Sum_probs=211.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHH---HHHHHHHHHHc
Q 048235 10 YRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEG---AFWVLQQLKQQ 86 (455)
Q Consensus 10 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~ 86 (455)
-+-.|..+++.+++++|-+.+....... +......+-+-..|+-+-...++.-+.-. ...+++.+...
T Consensus 172 ~eeyie~L~~~d~~~eaa~~la~vln~d---------~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r 242 (835)
T KOG2047|consen 172 REEYIEYLAKSDRLDEAAQRLATVLNQD---------EFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR 242 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhcCch---------hhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc
Confidence 3444555566666666666665555320 00001123334455555554444433222 22233333322
Q ss_pred CCCCC--HhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC----------------------Ch
Q 048235 87 GQKPS--ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREG----------------------KT 142 (455)
Q Consensus 87 ~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------------~~ 142 (455)
-+| ...|++|.+-|.+.|.++.|.++|++..... .+..-|..+-++|+.-. ++
T Consensus 243 --ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v-~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl 319 (835)
T KOG2047|consen 243 --FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV-MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDL 319 (835)
T ss_pred --CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhH
Confidence 233 4567888999999999999999999887642 34555555556555321 12
Q ss_pred HHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------cHHHHHHHHHH
Q 048235 143 DEAVSAVEDMERRGI-----------VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP------LVVSYTGLIQA 205 (455)
Q Consensus 143 ~~a~~~~~~m~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~------~~~~~~~li~~ 205 (455)
+..+.-|+.+..... +.++..|..-+. +..|+..+...++.+..+. +.| -...|..+...
T Consensus 320 ~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~fakl 396 (835)
T KOG2047|consen 320 ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKL 396 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHH
Confidence 223333333333210 112223322222 2456777777888777654 222 14567888899
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC------
Q 048235 206 CLDSGNIQNAAYIFNQMKNFCSPN----LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP------ 275 (455)
Q Consensus 206 ~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p------ 275 (455)
|-..|+++.|..+|++.....-+. ..+|..-...=.++.+++.|+++.+.......++. .....+..|
T Consensus 397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~--~~~yd~~~pvQ~rlh 474 (835)
T KOG2047|consen 397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE--LEYYDNSEPVQARLH 474 (835)
T ss_pred HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh--hhhhcCCCcHHHHHH
Confidence 999999999999999987642222 34455555555677889999998887765431111 111111112
Q ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------------------------------CCH-HHHHHHH
Q 048235 276 -DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLH----------------------------------FNA-KRHLRMI 319 (455)
Q Consensus 276 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----------------------------------p~~-~~~~~ll 319 (455)
+...|..+++.--..|-++....+++++++..+. |+. ..|+..+
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 2344555555555566677777777777643221 221 2334433
Q ss_pred HHHH-h--cCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHh-hccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcc
Q 048235 320 LDAS-R--AGKVELLEITWEHLARADRITPPALIKERFCNRL-ENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQ 395 (455)
Q Consensus 320 ~~~~-~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 395 (455)
.-+. + .-.++.|..+|++.++.++......+..+++.+- +.|--..|+.+++.+.......--...|+.++.- +.
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~k-aa 633 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKK-AA 633 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH
Confidence 3331 1 2245667777777766443111111221222221 4566666777776654433221112344443332 11
Q ss_pred cCCcc-hHHHHHHHhccccccccCC--CchhHHHHHHhHHhhhhccCCc
Q 048235 396 HFGQD-TLIQLLHEASSSLTTRNGS--PYPVLQNLISSCKDFLRTQSPA 441 (455)
Q Consensus 396 ~~~~~-~~~~~~~~~~~~~~p~~~~--~~~~l~~~~~~~~~~~~a~~~~ 441 (455)
..-+- ...+.+.+.+.. -|++-. -.+..+.+=.+.|..++|..+.
T Consensus 634 e~yGv~~TR~iYekaIe~-Lp~~~~r~mclrFAdlEtklGEidRARaIy 681 (835)
T KOG2047|consen 634 EIYGVPRTREIYEKAIES-LPDSKAREMCLRFADLETKLGEIDRARAIY 681 (835)
T ss_pred HHhCCcccHHHHHHHHHh-CChHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 11122 333445555553 344322 2233366666667776666653
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.08 E-value=8.4e-07 Score=82.47 Aligned_cols=262 Identities=15% Similarity=0.119 Sum_probs=192.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048235 10 YRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK 89 (455)
Q Consensus 10 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 89 (455)
|..++..| ..+++...+++.+.+.. ..+-...+.....-.+...|+-++|......-.+.++.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~----------------k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~ 73 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILK----------------KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK 73 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHH----------------hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc
Confidence 44444444 46788899999888884 33444555555555667789999999999888887666
Q ss_pred CCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048235 90 PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR 169 (455)
Q Consensus 90 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 169 (455)
+.+.|+.+.-.+....++++|++.|.......+.|...|.-+.-.-++.|+++.....-.++.+.. +.....|..++.
T Consensus 74 -S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Av 151 (700)
T KOG1156|consen 74 -SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAV 151 (700)
T ss_pred -cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHH
Confidence 788888888778888999999999999999888899999988888888999999998888887763 334556777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC-CCcHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 048235 170 CLCSAGKCEEALMQMDKICKVAN-KPLVVSYTGLI------QACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLE 242 (455)
Q Consensus 170 ~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 242 (455)
++.-.|+...|..++++..+... .|+...|.-.. ....+.|.++.|.+.+......+......-.+-...+.+
T Consensus 152 s~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~k 231 (700)
T KOG1156|consen 152 AQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHH
Confidence 88889999999999999887753 45655554322 334567888888888877655433344444556677889
Q ss_pred cCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHH-HHHHcCCHHHHH-HHHHHHH
Q 048235 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD-ACAAEKRWDDLE-LVYKRML 304 (455)
Q Consensus 243 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~-~~~~~~~~~~a~-~~~~~m~ 304 (455)
.+++++|..++..++..+ ||..-|.-.+. ++.+-.+.-++. .+|....
T Consensus 232 l~~lEeA~~~y~~Ll~rn--------------Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls 281 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLERN--------------PDNLDYYEGLEKALGKIKDMLEALKALYAILS 281 (700)
T ss_pred HhhHHhHHHHHHHHHhhC--------------chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 999999999999999965 87766655544 443332223333 4444443
No 84
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.04 E-value=5.5e-06 Score=71.35 Aligned_cols=352 Identities=10% Similarity=0.074 Sum_probs=231.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048235 12 SIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPS 91 (455)
Q Consensus 12 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 91 (455)
-+...+...|++..|+..|....+ +.+.+-.++-.-...|...|+...|+.=+.+.++. +||
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve----------------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpD 104 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVE----------------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPD 104 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHc----------------CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--Ccc
Confidence 355566777888889988888873 32333344444456788889988888888888875 555
Q ss_pred HhhHH-HHHHHHHHcCChhHHHHHHHHHHhcCCC---CHHHH------------HHHHHHHHhcCChHHHHHHHHHHHHC
Q 048235 92 ATTYG-LVMEVMLACGKYNLVYEFFRKVQKSYIP---NALAY------------KVLVNTLWREGKTDEAVSAVEDMERR 155 (455)
Q Consensus 92 ~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~------------~~li~~~~~~g~~~~a~~~~~~m~~~ 155 (455)
-..-. .-...+.+.|.++.|..=|+.+.+..+. ...++ ...+..+...|+...|+.....+++.
T Consensus 105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 105 FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI 184 (504)
T ss_pred HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence 32221 1123467899999999999999876542 22222 23344566779999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH-
Q 048235 156 GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCN- 234 (455)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~- 234 (455)
. +.|...|..-..+|...|++..|+.=++...+.... +..++-.+-..+...|+.+.++...++..+..+..-..|.
T Consensus 185 ~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~ 262 (504)
T KOG0624|consen 185 Q-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF 262 (504)
T ss_pred C-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH
Confidence 3 445677777889999999999998777766665433 4455555667778888888888888777653222222221
Q ss_pred --HH---------HHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCc--H---HHHHHHHHHHHHcCCHHHHHH
Q 048235 235 --IM---------VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD--I---YTFNTMLDACAAEKRWDDLEL 298 (455)
Q Consensus 235 --~l---------i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~--~---~~~~~li~~~~~~~~~~~a~~ 298 (455)
.| +......+++.++++-.+..++.. |. . ..+..+-.++...+++.+|++
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e--------------p~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE--------------PEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC--------------CcccceeeeeeheeeecccccCCHHHHHH
Confidence 11 122344566777777777766644 43 2 233445556677788999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCCC
Q 048235 299 VYKRMLHHGLHFN-AKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSG 377 (455)
Q Consensus 299 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 377 (455)
.-.+..+ +.|| ..++..-..+|.-...++.|+.-|+...+.+..+.. . ....+.|.++.+....
T Consensus 329 qC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~--~---------reGle~Akrlkkqs~k-- 393 (504)
T KOG0624|consen 329 QCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR--A---------REGLERAKRLKKQSGK-- 393 (504)
T ss_pred HHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH--H---------HHHHHHHHHHHHHhcc--
Confidence 8888887 4565 567777778888888899999999988876644332 1 1123445554443322
Q ss_pred CccccHHHHHHHHhhhcccCCcc-hHHHHHHHhccccccccCCC
Q 048235 378 SPEFSRNAWLKFFKENSQHFGQD-TLIQLLHEASSSLTTRNGSP 420 (455)
Q Consensus 378 ~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~ 420 (455)
..|..+++ ..+.... |..+.+.+.+.+-.|+|-.-
T Consensus 394 ------RDYYKILG--VkRnAsKqEI~KAYRKlAqkWHPDNFqd 429 (504)
T KOG0624|consen 394 ------RDYYKILG--VKRNASKQEITKAYRKLAQKWHPDNFQD 429 (504)
T ss_pred ------chHHHHhh--hcccccHHHHHHHHHHHHHhcCCccccC
Confidence 34455555 4555444 77777777777778887543
No 85
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.02 E-value=2.4e-08 Score=87.97 Aligned_cols=250 Identities=16% Similarity=0.171 Sum_probs=166.7
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh
Q 048235 15 VTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATT 94 (455)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 94 (455)
+.+--.|++..+++-.+ ... .....+......+.+++...|+++.++ .++.... .|....
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~---------------~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~a 68 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKS---------------FSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQA 68 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHT---------------STCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHH
T ss_pred HHHHHhhhHHHHHHHhh-ccC---------------CCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHH
Confidence 34455788999887666 322 111234556677889999999987644 4444333 666666
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCHHHHH-HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048235 95 YGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYK-VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172 (455)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 172 (455)
...+...+....+-+.+..-+........ .+..++. .....+...|++++|++++... .+.......+..|.
T Consensus 69 v~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L 142 (290)
T PF04733_consen 69 VRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILL 142 (290)
T ss_dssp HHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHH
Confidence 65555444333444445444443332222 2223333 3335566789999999888643 35566677889999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhH
Q 048235 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD----SGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEE 248 (455)
Q Consensus 173 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 248 (455)
+.++++.|.+.++.|.+.. .| .+...+..++.. ...+.+|..+|+++.+..++++.+.+.+..++...|++++
T Consensus 143 ~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~e 219 (290)
T PF04733_consen 143 KMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEE 219 (290)
T ss_dssp HTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHH
T ss_pred HcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999998864 23 344445555543 3469999999999988788999999999999999999999
Q ss_pred HHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHc
Q 048235 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW-DDLELVYKRMLHH 306 (455)
Q Consensus 249 a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~ 306 (455)
|.+++.+..... +-++.+...++......|+. +.+.+++.++...
T Consensus 220 Ae~~L~~al~~~-------------~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 220 AEELLEEALEKD-------------PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHCCC--------------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhc-------------cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999987754 22677887888888888887 6788899998873
No 86
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=3.5e-08 Score=90.24 Aligned_cols=220 Identities=17% Similarity=0.123 Sum_probs=174.9
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048235 102 MLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181 (455)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 181 (455)
+.+.|++..|.-.|+......|.+..+|.-|.......++-..|+..+++..+.+ +-+....-.|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 4688999999999999999888899999999999999999999999999998875 334567777888899999999999
Q ss_pred HHHHHHHHcCCCC--------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhcCChhHHHH
Q 048235 182 MQMDKICKVANKP--------LVVSYTGLIQACLDSGNIQNAAYIFNQMKNF--CSPNLVTCNIMVKAYLEHGLFEEAMK 251 (455)
Q Consensus 182 ~~~~~m~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~ 251 (455)
..++......++- +...-.. ..+.....+....++|-++... ..+|...+..|.-.|--.|++++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 9999876654210 0000000 1122223345566777776544 34889999999999999999999999
Q ss_pred HHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChH
Q 048235 252 LFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA-KRHLRMILDASRAGKVE 329 (455)
Q Consensus 252 ~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~ 329 (455)
.|+.++. ++| |..+||.|...++...+.++|+..|++.++ ++|.. +....|..+|...|.++
T Consensus 452 cf~~AL~--------------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~yk 515 (579)
T KOG1125|consen 452 CFEAALQ--------------VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYK 515 (579)
T ss_pred HHHHHHh--------------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHH
Confidence 9999999 557 788999999999999999999999999999 66764 35556777899999999
Q ss_pred HHHHHHHHHhh
Q 048235 330 LLEITWEHLAR 340 (455)
Q Consensus 330 ~a~~~~~~~~~ 340 (455)
+|.+.|-..+.
T Consensus 516 EA~~hlL~AL~ 526 (579)
T KOG1125|consen 516 EAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHHH
Confidence 99988776543
No 87
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=1.1e-05 Score=74.43 Aligned_cols=392 Identities=13% Similarity=0.072 Sum_probs=214.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048235 12 SIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPS 91 (455)
Q Consensus 12 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 91 (455)
+=+..+...|++++|.+...++.. +.+-+...+..=+-+..+.++|++|+.+.+.=... ..+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~----------------~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~ 78 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILS----------------IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVI 78 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHh----------------cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhc
Confidence 345677889999999999999984 44667778888888889999999998555432211 111
Q ss_pred HhhHHHHHHHH--HHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----------
Q 048235 92 ATTYGLVMEVM--LACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG---------- 159 (455)
Q Consensus 92 ~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---------- 159 (455)
..-+ +=.+| .+.+..++|...+..... .+..+...-...+.+.|++++|+.+|+.+.+.+..-
T Consensus 79 ~~~~--fEKAYc~Yrlnk~Dealk~~~~~~~---~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~ 153 (652)
T KOG2376|consen 79 NSFF--FEKAYCEYRLNKLDEALKTLKGLDR---LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL 153 (652)
T ss_pred chhh--HHHHHHHHHcccHHHHHHHHhcccc---cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 1111 22333 478888998888873322 344466666777888899999999998875443210
Q ss_pred -----------------CHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHcCC-------CCcH-------HHHHHHHHH
Q 048235 160 -----------------SAALYYD---LARCLCSAGKCEEALMQMDKICKVAN-------KPLV-------VSYTGLIQA 205 (455)
Q Consensus 160 -----------------~~~~~~~---l~~~~~~~g~~~~a~~~~~~m~~~~~-------~~~~-------~~~~~li~~ 205 (455)
...+|.. ....+...|++.+|+++++...+.+. .-+. .+-..|...
T Consensus 154 a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 154 AVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred HHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 0112322 23334567888888888887732211 1011 112334555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHH----HHHHHHHHhcCChh-HHHHHHHHHHhcc---------------cccch
Q 048235 206 CLDSGNIQNAAYIFNQMKNFCSPNLVTC----NIMVKAYLEHGLFE-EAMKLFQEMAEDS---------------NHINR 265 (455)
Q Consensus 206 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~li~~~~~~~~~~-~a~~~~~~m~~~~---------------~~~~~ 265 (455)
+...|+.++|..++..+....++|.... |.|+..-....-++ .++..++...... +-.+.
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~ 313 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN 313 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888888888877655655332 22222111111111 0111111110000 00000
Q ss_pred --------------hhccC-CCCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcC
Q 048235 266 --------------EYDKK-GLVIPDIYTFNTMLDACAAE--KRWDDLELVYKRMLHHGLHFNA--KRHLRMILDASRAG 326 (455)
Q Consensus 266 --------------~~~~~-~~~~p~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g 326 (455)
+.... .+..| ...+..++..+.+. ....++.+++...-+.. |+. ......+......|
T Consensus 314 ~lL~l~tnk~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~--p~~s~~v~L~~aQl~is~g 390 (652)
T KOG2376|consen 314 ALLALFTNKMDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGH--PEKSKVVLLLRAQLKISQG 390 (652)
T ss_pred HHHHHHhhhHHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC--CchhHHHHHHHHHHHHhcC
Confidence 00000 11222 23444455443322 24666777776666532 333 34444455568899
Q ss_pred ChHHHHHHHH--------HHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCC-----CCCccccHHHHHHHHhhh
Q 048235 327 KVELLEITWE--------HLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPV-----SGSPEFSRNAWLKFFKEN 393 (455)
Q Consensus 327 ~~~~a~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~~l~~~~ 393 (455)
+++.|.+++. .+.+....|. ++..+....++.++-+.|..++.++.. ......-...|-.....-
T Consensus 391 n~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~ 468 (652)
T KOG2376|consen 391 NPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFK 468 (652)
T ss_pred CHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHH
Confidence 9999999998 5555544432 234444444555555555555443321 001111124444444422
Q ss_pred cccCCcchHHHHHHHhccccccccCCCchhHHHHHHhHH
Q 048235 394 SQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCK 432 (455)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 432 (455)
..+|...++.....+..+ .+|++.+....|...|+...
T Consensus 469 lr~G~~~ea~s~leel~k-~n~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 469 LRHGNEEEASSLLEELVK-FNPNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HhcCchHHHHHHHHHHHH-hCCchHHHHHHHHHHHHhcC
Confidence 333333366666655555 88999999999988887764
No 88
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=3.8e-06 Score=72.61 Aligned_cols=157 Identities=15% Similarity=0.110 Sum_probs=85.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-------ChhHHHHHHHHHHhcccccchhhccCCCC
Q 048235 201 GLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHG-------LFEEAMKLFQEMAEDSNHINREYDKKGLV 273 (455)
Q Consensus 201 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 273 (455)
.|+--|.+.+++.+|..+.+++. |.++.-|..-.-.++..| ...-|.+.|+..-+++ .
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa------------~ 354 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESA------------L 354 (557)
T ss_pred hheeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccc------------c
Confidence 34445667777777777766653 122322322222233333 2344556665554444 2
Q ss_pred CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHH
Q 048235 274 IPD-IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKE 352 (455)
Q Consensus 274 ~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 352 (455)
.-| ..--.++...+.-..++++++-+++.+.+.=.. |......+..+.+..|.+.+|+++|-.+..... .....+..
T Consensus 355 ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s 432 (557)
T KOG3785|consen 355 ECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKS 432 (557)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHH
Confidence 222 222233444555556678888888887775333 333334567778888888888888876643221 12222222
Q ss_pred H-HHHHhhccchHHHHHHhhhcC
Q 048235 353 R-FCNRLENKDYGSAISCLVSHP 374 (455)
Q Consensus 353 ~-~~~~~~~~~~~~A~~~~~~~~ 374 (455)
+ ..+.++.++...|+.++-++.
T Consensus 433 ~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 433 MLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred HHHHHHHhcCCchHHHHHHHhcC
Confidence 2 234458888888888776654
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=8.1e-07 Score=80.85 Aligned_cols=345 Identities=13% Similarity=0.091 Sum_probs=187.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHH
Q 048235 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDE 144 (455)
Q Consensus 65 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 144 (455)
.+.+..|+++.|..+|.+....... |...|+.-..+|...|++++|.+=-.+-.+..|.-.-.|+....++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 3455678888888888888876544 778888888888888888888776666666666566778888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------------------------------------------------CC
Q 048235 145 AVSAVEDMERRGIVGSAALYYDLARCLCSA------------------------------------------------GK 176 (455)
Q Consensus 145 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~------------------------------------------------g~ 176 (455)
|+..|.+-++.. +.+...+..+..++... .+
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 888888776653 23344444444444111 00
Q ss_pred HHHHHHHHHHHHH--------cC-------CCC------------c----------HHHHHHHHHHHHhcCCHHHHHHHH
Q 048235 177 CEEALMQMDKICK--------VA-------NKP------------L----------VVSYTGLIQACLDSGNIQNAAYIF 219 (455)
Q Consensus 177 ~~~a~~~~~~m~~--------~~-------~~~------------~----------~~~~~~li~~~~~~~~~~~a~~~~ 219 (455)
.+..+.....+.. .+ ..| | ..-...+..+.-+..+++.|.+-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 0001111100000 00 011 0 011345566666677777787777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHH-------HHHHHHHHcCC
Q 048235 220 NQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN-------TMLDACAAEKR 292 (455)
Q Consensus 220 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~-------~li~~~~~~~~ 292 (455)
....+.. -+..-++....+|...|.+.+....-....+.|- -...-|+ .+..+|.+.++
T Consensus 248 ~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-------------e~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 248 AKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-------------ELRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred HHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-------------HHHHHHHHHHHHHHHhhhhhhhHHh
Confidence 7776644 5566667777888888888888877777776651 1122222 23346667788
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhh
Q 048235 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVS 372 (455)
Q Consensus 293 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 372 (455)
++.+...|++.......|+.. .+....+++....+...-.++... .....-....+..|++..|+.-+.+
T Consensus 314 ~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~A-~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEKA-EEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred HHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhHH-HHHHHHHHHHHhccCHHHHHHHHHH
Confidence 899999998877644444422 112222333333222222121111 1111122223345555555544444
Q ss_pred cCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHhccccccccCCCchhHHHHHHhHHhhhhcc
Q 048235 373 HPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQ 438 (455)
Q Consensus 373 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~ 438 (455)
+....+. +...|......+...+...+++.-+...+. ++|+.+-+|+.-|.++....+|++|.
T Consensus 384 AIkr~P~--Da~lYsNRAac~~kL~~~~~aL~Da~~~ie-L~p~~~kgy~RKg~al~~mk~ydkAl 446 (539)
T KOG0548|consen 384 AIKRDPE--DARLYSNRAACYLKLGEYPEALKDAKKCIE-LDPNFIKAYLRKGAALRAMKEYDKAL 446 (539)
T ss_pred HHhcCCc--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322211 224444444433444444444444333333 55555555555555555555554443
No 90
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=1.7e-05 Score=73.36 Aligned_cols=345 Identities=14% Similarity=0.091 Sum_probs=186.7
Q ss_pred CCCC-HhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHH--HHHHH--HhcCCHHHHH
Q 048235 3 SYPD-TVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNA--VLNAC--VRRKQWEGAF 77 (455)
Q Consensus 3 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--li~~~--~~~~~~~~a~ 77 (455)
+.|| ...+.+=+.++.+.+++++|+.+.+.-.. ..+++. +=.+| .+.+..++|+
T Consensus 41 ~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---------------------~~~~~~~~fEKAYc~Yrlnk~Deal 99 (652)
T KOG2376|consen 41 IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---------------------LLVINSFFFEKAYCEYRLNKLDEAL 99 (652)
T ss_pred cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---------------------hhhcchhhHHHHHHHHHcccHHHHH
Confidence 3444 55688888899999999999977665431 111111 12222 3456666666
Q ss_pred HHHHHHHHcCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC-------------------------------C
Q 048235 78 WVLQQLKQQGQKP-SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP-------------------------------N 125 (455)
Q Consensus 78 ~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------------------------~ 125 (455)
..++ |..+ +..+...-...+.+.|++++|..+|+.+.+...+ +
T Consensus 100 k~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~s 174 (652)
T KOG2376|consen 100 KTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDS 174 (652)
T ss_pred HHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcch
Confidence 6665 2222 2224444444555666666666666655322211 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------C------CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048235 126 ALAYKVLVNTLWREGKTDEAVSAVEDMERR-------G------IVGSAALY-YDLARCLCSAGKCEEALMQMDKICKVA 191 (455)
Q Consensus 126 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~------~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~ 191 (455)
-..+......++..|++.+|+++++...+. + +.....+. ..|...+-..|+..+|..++....+..
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 122233445667789999999999887321 1 11111111 224555667899999999998888775
Q ss_pred CCCcHHH----HHHHHHHHHhcCCHH-HHHHHHHH----------------------------------------HHhcC
Q 048235 192 NKPLVVS----YTGLIQACLDSGNIQ-NAAYIFNQ----------------------------------------MKNFC 226 (455)
Q Consensus 192 ~~~~~~~----~~~li~~~~~~~~~~-~a~~~~~~----------------------------------------~~~~~ 226 (455)
.. |... -|.|+..-....-++ .++..++. .....
T Consensus 255 ~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l 333 (652)
T KOG2376|consen 255 PA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL 333 (652)
T ss_pred CC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 42 3321 122221111000000 00000000 00012
Q ss_pred CCC--HHHHHHHHHHHHh--cCChhHHHHHHHHHHhcccccchhhccCCCCCCc--HHHHHHHHHHHHHcCCHHHHHHHH
Q 048235 227 SPN--LVTCNIMVKAYLE--HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD--IYTFNTMLDACAAEKRWDDLELVY 300 (455)
Q Consensus 227 ~~~--~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~ 300 (455)
++. ...+.+++....+ ...+.++.+++...-+.. |. .......+......|+++.|.+++
T Consensus 334 p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~--------------p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 334 PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH--------------PEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC--------------CchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 222 2233344433322 234667777777766643 43 455566777888999999999999
Q ss_pred H--------HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC------ChHhHHHHHHHHhhccchHHH
Q 048235 301 K--------RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRIT------PPALIKERFCNRLENKDYGSA 366 (455)
Q Consensus 301 ~--------~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A 366 (455)
. .+.+.+..|- +...++..+.+.++.+.|..++.+...--... -..++.....--++.|+-++|
T Consensus 400 ~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 9 6666555554 45555666788888777776666654321111 111222233333588999999
Q ss_pred HHHhhhcCCCCCccccHHHHHHHHhh
Q 048235 367 ISCLVSHPVSGSPEFSRNAWLKFFKE 392 (455)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~l~~~ 392 (455)
..++++.....++ +..+...++.+
T Consensus 478 ~s~leel~k~n~~--d~~~l~~lV~a 501 (652)
T KOG2376|consen 478 SSLLEELVKFNPN--DTDLLVQLVTA 501 (652)
T ss_pred HHHHHHHHHhCCc--hHHHHHHHHHH
Confidence 9999987753333 33566666665
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.94 E-value=7.1e-06 Score=70.67 Aligned_cols=310 Identities=13% Similarity=0.028 Sum_probs=179.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHh
Q 048235 95 YGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY-DLARCLCS 173 (455)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~~~ 173 (455)
..-+-+.+...|++..|+.-|.......+.+-.++..-...|...|+...|+.=+...++. +||-..-. .-...+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 3344555666677777777777766665544455555556666677777776666666554 35532211 12334456
Q ss_pred cCCHHHHHHHHHHHHHcCCCCc--HHH------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 048235 174 AGKCEEALMQMDKICKVANKPL--VVS------------YTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKA 239 (455)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~~~~--~~~------------~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 239 (455)
.|.+++|..=|+...+...... ... ....+..+...|+...|+.....+.+..+-|...+..-..+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 6777777777776666543111 111 12223344556777777777777777666777777777777
Q ss_pred HHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-
Q 048235 240 YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRM- 318 (455)
Q Consensus 240 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l- 318 (455)
|...|++..|+.=++...+.. .-+..++.-+-..+...|+.+.++...++..+ +.||...+...
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs-------------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~Y 263 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLS-------------QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFY 263 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhcc-------------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHH
Confidence 777777777776666655532 23455555566666777777777776666666 44665322111
Q ss_pred ------------HHHHHhcCChHHHHHHHHHHhhcCCCCChH--hHHHHHHHHh-hccchHHHHHHhhhcCCCCCccccH
Q 048235 319 ------------ILDASRAGKVELLEITWEHLARADRITPPA--LIKERFCNRL-ENKDYGSAISCLVSHPVSGSPEFSR 383 (455)
Q Consensus 319 ------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~ 383 (455)
+......++|.++.+..+.+++..+..+.. -...++|.+. +.|++.+|++..++.....+. ++
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~--dv 341 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD--DV 341 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch--HH
Confidence 111245566777777777776666552221 0122333332 667788888766665543322 34
Q ss_pred HHHHHHHhhhcccCCcchHHHHHHHhccccccccCCCchhH
Q 048235 384 NAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVL 424 (455)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l 424 (455)
.++..-..++.-...+|+++..+.+... .+|+|..+.-.+
T Consensus 342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e-~n~sn~~~reGl 381 (504)
T KOG0624|consen 342 QVLCDRAEAYLGDEMYDDAIHDYEKALE-LNESNTRAREGL 381 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcccHHHHHHH
Confidence 6666666655555566677766655444 777776655444
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=1.7e-06 Score=82.51 Aligned_cols=352 Identities=15% Similarity=0.147 Sum_probs=200.9
Q ss_pred HHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-------
Q 048235 16 TLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ-G------- 87 (455)
Q Consensus 16 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~------- 87 (455)
.|...|+.+.|.+-.+.+. +...|..|.+.|.+..+.+-|.-.+-.|... |
T Consensus 737 fyvtiG~MD~AfksI~~Ik---------------------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK---------------------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh---------------------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 3667799999988877765 5678999999999999988887776666431 1
Q ss_pred -CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048235 88 -QKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166 (455)
Q Consensus 88 -~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 166 (455)
-.|+ .+=..+.-.....|-+++|+.++++.++. ..|=..|-..|.|++|.++-+.--... -..||..
T Consensus 796 ~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~ 863 (1416)
T KOG3617|consen 796 QQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYN 863 (1416)
T ss_pred HhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHH
Confidence 1221 22222222345788899999999888653 344456677889999988775432222 2345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHH----------HHcCC---------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048235 167 LARCLCSAGKCEEALMQMDKI----------CKVAN---------KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227 (455)
Q Consensus 167 l~~~~~~~g~~~~a~~~~~~m----------~~~~~---------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 227 (455)
....+-..++.+.|++.|++. ....+ ..|...|..-.+.+-..|+.+.|+.+|...+.
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 677777788888888877752 22211 22445566666666778888888888877654
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Q 048235 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH-- 305 (455)
Q Consensus 228 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-- 305 (455)
|-++++..|-.|+.++|-++-++ .| |......|.+.|-..|++.+|..+|.+...
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~e---sg---------------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafs 997 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEE---SG---------------DKAACYHLARMYENDGDVVKAVKFFTRAQAFS 997 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHh---cc---------------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 44455555555555555544332 11 333333344555555555555555444431
Q ss_pred --------cCCC-----------C-CHH-----------HHHHHHHHHHhcCChHHHHHH---------HHHHh-hcCCC
Q 048235 306 --------HGLH-----------F-NAK-----------RHLRMILDASRAGKVELLEIT---------WEHLA-RADRI 344 (455)
Q Consensus 306 --------~~~~-----------p-~~~-----------~~~~ll~~~~~~g~~~~a~~~---------~~~~~-~~~~~ 344 (455)
.+++ | |.. -+...+..|-++|.+.+|+++ ++-+. ..++.
T Consensus 998 nAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 998 NAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred HHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence 0100 0 000 111223346667777666543 12221 12222
Q ss_pred CChHhHHHHHHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHhcccc---ccc---cC
Q 048235 345 TPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSL---TTR---NG 418 (455)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~p~---~~ 418 (455)
..+.++.+...-.....++++|..++.... -+..-+. .|.++.-..-+.+++++.-. +|+ ..
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar----------~~~~Alq--lC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~ 1145 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLAR----------EFSGALQ--LCKNRNVRVTEEFAELMTPTKDDMPNEQERK 1145 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHH----------HHHHHHH--HHhcCCCchhHHHHHhcCcCcCCCccHHHHH
Confidence 233333333333346778888888777553 2333344 57776655555555554411 111 12
Q ss_pred CCchhHHHHHHhHHhhhhcc
Q 048235 419 SPYPVLQNLISSCKDFLRTQ 438 (455)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~ 438 (455)
.....+++.+.+||.|..|-
T Consensus 1146 ~vLeqvae~c~qQG~Yh~At 1165 (1416)
T KOG3617|consen 1146 QVLEQVAELCLQQGAYHAAT 1165 (1416)
T ss_pred HHHHHHHHHHHhccchHHHH
Confidence 34456688888888885543
No 93
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=4e-07 Score=83.48 Aligned_cols=220 Identities=12% Similarity=0.071 Sum_probs=178.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHH
Q 048235 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEA 145 (455)
Q Consensus 66 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 145 (455)
-+.+.|++.+|.-.|+...+.++. +...|..|-......++-..|+..+++..+..+.+..+.-.|.-.|...|.-..|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 356889999999999999988665 7888999888888999999999999999999889999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcCCHH
Q 048235 146 VSAVEDMERRGIVGSAALYYDLA-----------RCLCSAGKCEEALMQMDKICKV-ANKPLVVSYTGLIQACLDSGNIQ 213 (455)
Q Consensus 146 ~~~~~~m~~~~~~~~~~~~~~l~-----------~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~ 213 (455)
+..++.......+ |..+. ..+.....+....++|-++... +..+|..+...|.-.|--.|+++
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999988654311 00000 1111222334445556555444 44478888888988999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCc-HHHHHHHHHHHHHcCC
Q 048235 214 NAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD-IYTFNTMLDACAAEKR 292 (455)
Q Consensus 214 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~ 292 (455)
+|...|+......|-|..+||.|..+++...+.++|+..|++.++ ..|+ +.....|.-+|...|.
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--------------LqP~yVR~RyNlgIS~mNlG~ 513 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--------------LQPGYVRVRYNLGISCMNLGA 513 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--------------cCCCeeeeehhhhhhhhhhhh
Confidence 999999999887788899999999999999999999999999999 5685 4556667778999999
Q ss_pred HHHHHHHHHHHHH
Q 048235 293 WDDLELVYKRMLH 305 (455)
Q Consensus 293 ~~~a~~~~~~m~~ 305 (455)
+++|.+.|-.++.
T Consensus 514 ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 514 YKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888765
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=2e-06 Score=72.52 Aligned_cols=308 Identities=11% Similarity=0.074 Sum_probs=202.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHH-HHHH
Q 048235 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKV-LVNT 135 (455)
Q Consensus 57 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-li~~ 135 (455)
..-+++.+.-+.+..++..|++++..-.++..+ +....+.|..+|....++..|-..++++....| ...-|.. -...
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P-~~~qYrlY~AQS 87 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP-ELEQYRLYQAQS 87 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh-HHHHHHHHHHHH
Confidence 334667777778899999999999988887544 788888888999999999999999999987654 3333332 2456
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH
Q 048235 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLAR--CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQ 213 (455)
Q Consensus 136 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 213 (455)
+.+.+.+..|+++...|.+. +....-..-+. .....+++..+..++++....| +..+.+...-...+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 67788999999999888654 22111111111 1235677777777777665433 4445555555567899999
Q ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhh--------ccCCCCC-CcHHHHHHH
Q 048235 214 NAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREY--------DKKGLVI-PDIYTFNTM 283 (455)
Q Consensus 214 ~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--------~~~~~~~-p~~~~~~~l 283 (455)
.|.+-|+...+. .-.....||..+ +..+.|+++.|++...++++.|++..++. .+...+. |-...-+.+
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 999999998664 333445677655 45567899999999999999997644411 1111111 111122233
Q ss_pred HH-------HHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHH
Q 048235 284 LD-------ACAAEKRWDDLELVYKRMLH-HGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFC 355 (455)
Q Consensus 284 i~-------~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 355 (455)
+. .+.+.|+++.|.+.+-.|-- ..-..|++|...+... -..+++-+..+-+.-+++..|. |...+..++.
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLl 318 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFANLLL 318 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHHHHH
Confidence 33 34567888888888887754 2234456666554322 2245555566666666677774 4455666666
Q ss_pred HHhhccchHHHHHHhhhcCC
Q 048235 356 NRLENKDYGSAISCLVSHPV 375 (455)
Q Consensus 356 ~~~~~~~~~~A~~~~~~~~~ 375 (455)
.+++..-++-|..++-+.+.
T Consensus 319 lyCKNeyf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAENAH 338 (459)
T ss_pred HHhhhHHHhHHHHHHhhCcc
Confidence 66688888999888877663
No 95
>PF12854 PPR_1: PPR repeat
Probab=98.92 E-value=1.7e-09 Score=60.87 Aligned_cols=34 Identities=29% Similarity=0.584 Sum_probs=32.3
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhh
Q 048235 1 MSSYPDTVAYRSIAVTLGQAGHIKELFDVIDSMR 34 (455)
Q Consensus 1 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 34 (455)
.|+.||..|||++|.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3899999999999999999999999999999984
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=8.1e-07 Score=74.82 Aligned_cols=94 Identities=12% Similarity=0.075 Sum_probs=69.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048235 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ 88 (455)
Q Consensus 9 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 88 (455)
-|++.+..+.+..+++.|++++....+. .+.+......|..+|.+..++..|-..|+++...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er----------------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql-- 73 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELER----------------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL-- 73 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhc----------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 4778888899999999999999988753 2447788888899999999999999999999875
Q ss_pred CCCHhhHHHH-HHHHHHcCChhHHHHHHHHHHh
Q 048235 89 KPSATTYGLV-MEVMLACGKYNLVYEFFRKVQK 120 (455)
Q Consensus 89 ~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~ 120 (455)
.|...-|... ...+.+.+.+.+|+.+...|..
T Consensus 74 ~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 74 HPELEQYRLYQAQSLYKACIYADALRVAFLLLD 106 (459)
T ss_pred ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 3444333321 2334466667777776666543
No 97
>PLN02789 farnesyltranstransferase
Probab=98.88 E-value=4.7e-06 Score=74.53 Aligned_cols=216 Identities=10% Similarity=0.014 Sum_probs=163.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHcC
Q 048235 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRK-QWEGAFWVLQQLKQQG 87 (455)
Q Consensus 9 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~ 87 (455)
++..+-..+...++.++|+.+.+++.+. .+-+..+|+.--.++...| ++++++..++++.+.+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l----------------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n 102 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL----------------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN 102 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH----------------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC
Confidence 4556666677789999999999999853 2445667887777777777 6899999999999886
Q ss_pred CCCCHhhHHHHHHHHHHcCCh--hHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 048235 88 QKPSATTYGLVMEVMLACGKY--NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165 (455)
Q Consensus 88 ~~p~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 165 (455)
.+ +..+|+....++.+.|+. +.+..+++++....+.+..+|+...-++...|+++++++.++++++.+.. +...|+
T Consensus 103 pk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~ 180 (320)
T PLN02789 103 PK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWN 180 (320)
T ss_pred Cc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHH
Confidence 65 666677665555666653 67888999999888889999999999999999999999999999998744 455566
Q ss_pred HHHHHHHhc---CCH----HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCHHHHH
Q 048235 166 DLARCLCSA---GKC----EEALMQMDKICKVANKPLVVSYTGLIQACLDS----GNIQNAAYIFNQMKNFCSPNLVTCN 234 (455)
Q Consensus 166 ~l~~~~~~~---g~~----~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~ 234 (455)
.....+.+. |+. ++.+....++....+. +...|+-+...+... ++..+|...+.+.....+.+.....
T Consensus 181 ~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~ 259 (320)
T PLN02789 181 QRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALS 259 (320)
T ss_pred HHHHHHHhccccccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHH
Confidence 555444443 222 4667777777776544 678888888777773 3456688888887665566778888
Q ss_pred HHHHHHHhc
Q 048235 235 IMVKAYLEH 243 (455)
Q Consensus 235 ~li~~~~~~ 243 (455)
.|+..|+..
T Consensus 260 ~l~d~~~~~ 268 (320)
T PLN02789 260 DLLDLLCEG 268 (320)
T ss_pred HHHHHHHhh
Confidence 899999863
No 98
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=9.4e-06 Score=70.24 Aligned_cols=219 Identities=10% Similarity=0.053 Sum_probs=131.1
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh
Q 048235 14 AVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSAT 93 (455)
Q Consensus 14 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 93 (455)
+.-+....++..|+.+++.-.... +....+...| +..++.+.|++++|+..|.-+.+. -.|+..
T Consensus 29 Ledfls~rDytGAislLefk~~~~-------------~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~e 92 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLD-------------REEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNK-DDAPAE 92 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccc-------------hhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhcc-CCCCcc
Confidence 445666778888888887765320 1111223333 445677889999999999888774 345666
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048235 94 TYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173 (455)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 173 (455)
.+..|.-.+.-.|.+.+|..+-.+..+ +.-.-..|.....+.++-++-..+.+.+.+.- .---+|.+....
T Consensus 93 l~vnLAcc~FyLg~Y~eA~~~~~ka~k----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYm 163 (557)
T KOG3785|consen 93 LGVNLACCKFYLGQYIEAKSIAEKAPK----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYM 163 (557)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHH
Confidence 666666666667888888777555422 33333444455556676666665555554321 112234444445
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 048235 174 AGKCEEALMQMDKICKVANKPLVVSYTG-LIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKL 252 (455)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 252 (455)
.-.+.+|++++.+....+ |+-...|. +.-+|.+..-++-+.+++.--.+..+.++...|.......+.=+-..|.+-
T Consensus 164 R~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E 241 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDE 241 (557)
T ss_pred HHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHH
Confidence 566888889888887654 33333333 334566777788888888777666666677766665555554333344444
Q ss_pred HHHHHhc
Q 048235 253 FQEMAED 259 (455)
Q Consensus 253 ~~~m~~~ 259 (455)
.+++...
T Consensus 242 ~k~ladN 248 (557)
T KOG3785|consen 242 KKELADN 248 (557)
T ss_pred HHHHHhc
Confidence 4444443
No 99
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.85 E-value=4.9e-06 Score=83.88 Aligned_cols=231 Identities=13% Similarity=0.112 Sum_probs=162.9
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHH
Q 048235 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPS-----ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALA 128 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 128 (455)
|.+...|-..|..+...++.+.|.+++++.+.. |.+. ...|.++++.-..-|.-+...++|+++.+.+ ....+
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHHH
Confidence 455667888888888888888888888887763 2221 3456666666666777777888888877653 23456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHH
Q 048235 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP-LVVSYTGLIQACL 207 (455)
Q Consensus 129 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~ 207 (455)
|..|...|.+.+.+++|.++++.|.+. +......|...+..+.+..+-+.|..++.+..+.-++- ........++.-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 778888888888888888888888776 23455667777888888888888888888777654331 2444556666677
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCc--HHHHHHHHH
Q 048235 208 DSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD--IYTFNTMLD 285 (455)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~--~~~~~~li~ 285 (455)
+.|+.+.+..+|+.+....|.-...|+..|+.-.++|+.+.+..+|++....+ ..|- -+.|...+.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~------------l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK------------LSIKKMKFFFKKWLE 1679 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC------------CChhHhHHHHHHHHH
Confidence 88888888888888877677777788888888888888888888888888877 4442 345555555
Q ss_pred HHHHcCCHHHHHHH
Q 048235 286 ACAAEKRWDDLELV 299 (455)
Q Consensus 286 ~~~~~~~~~~a~~~ 299 (455)
.--..|+-..++.+
T Consensus 1680 yEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1680 YEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHhcCchhhHHHH
Confidence 55555554443333
No 100
>PLN02789 farnesyltranstransferase
Probab=98.84 E-value=1.8e-05 Score=70.88 Aligned_cols=216 Identities=8% Similarity=0.011 Sum_probs=163.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcC-ChhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 048235 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG-KYNLVYEFFRKVQKSYIPNALAYKVLVNTL 136 (455)
Q Consensus 58 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 136 (455)
.++..+-..+...++.++|+.+.+++++.... +...|+.--.++...| ++++++..++++....+.+..+|+.....+
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l 116 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence 34555556667788999999999999986433 4455655555666677 579999999999988888888898777666
Q ss_pred HhcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc---CC
Q 048235 137 WREGKT--DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS---GN 211 (455)
Q Consensus 137 ~~~g~~--~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---~~ 211 (455)
.+.|.. +.++.+++++.+.+ +-+..+|+.....+...|+++++++.+.++.+.++. +...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 677763 67889999998876 346778888888888899999999999999998766 667777666655544 22
Q ss_pred H----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHH
Q 048235 212 I----QNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH----GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283 (455)
Q Consensus 212 ~----~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~l 283 (455)
. +.............+.|...|+-+...+... +...+|...+.+....+ ..+......|
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-------------~~s~~al~~l 261 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-------------SNHVFALSDL 261 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-------------CCcHHHHHHH
Confidence 2 4567777677776788899999988888773 34567888888877643 2367788888
Q ss_pred HHHHHH
Q 048235 284 LDACAA 289 (455)
Q Consensus 284 i~~~~~ 289 (455)
+..|+.
T Consensus 262 ~d~~~~ 267 (320)
T PLN02789 262 LDLLCE 267 (320)
T ss_pred HHHHHh
Confidence 888875
No 101
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.82 E-value=6.3e-06 Score=83.14 Aligned_cols=208 Identities=9% Similarity=0.051 Sum_probs=103.5
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048235 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERR-GIVGS---AALYYDLARCLCSAGKCEEALMQMDKICKVANK 193 (455)
Q Consensus 118 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 193 (455)
+....|.+...|-..|....+.++.+.|.+++++.+.. +++-. ...|.++++.-..-|.-+...++|+++.+.. .
T Consensus 1450 lvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d 1528 (1710)
T KOG1070|consen 1450 LVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D 1528 (1710)
T ss_pred HHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c
Confidence 33333444555555555555555555555555555432 11111 1233334444444455555555555555532 1
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCC
Q 048235 194 PLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV 273 (455)
Q Consensus 194 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 273 (455)
.-.+|..|...|.+.+.+++|.++++.|.+........|...+..+.++++-+.|..++.++++.-
T Consensus 1529 -~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l------------- 1594 (1710)
T KOG1070|consen 1529 -AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL------------- 1594 (1710)
T ss_pred -hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-------------
Confidence 134455555555555555556666655555444455555555555555555555555555555532
Q ss_pred CCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 048235 274 IPD---IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARAD 342 (455)
Q Consensus 274 ~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 342 (455)
|. .......+..-.+.|+.+.+..+|+.......+ -...|+.+++.-.+.|+.+.+..+|+++....
T Consensus 1595 -Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1595 -PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred -chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 22 222333334444555555555555555553211 12245555555555555555555555555544
No 102
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.82 E-value=0.0001 Score=67.67 Aligned_cols=376 Identities=8% Similarity=0.016 Sum_probs=214.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048235 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ 85 (455)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 85 (455)
|..+|+.||.-+... .++++.++++++. ...+-+...|..-|..-.+.++++.+.++|.+.+.
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~----------------~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLV----------------NVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHh----------------ccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 677999999998877 9999999999998 34566788999999999999999999999999987
Q ss_pred cCCCCCHhhHHHHHHHHHH-cCChhH----HHHHHHHHHhc-C--CCCHHHHHHHHHHH---------HhcCChHHHHHH
Q 048235 86 QGQKPSATTYGLVMEVMLA-CGKYNL----VYEFFRKVQKS-Y--IPNALAYKVLVNTL---------WREGKTDEAVSA 148 (455)
Q Consensus 86 ~~~~p~~~~~~~l~~~~~~-~~~~~~----a~~~~~~~~~~-~--~~~~~~~~~li~~~---------~~~g~~~~a~~~ 148 (455)
.-. +...|...+.--.+ .++... ..+.|+-.... + +.+...|+..+..+ ....+++...++
T Consensus 82 kvL--nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRri 159 (656)
T KOG1914|consen 82 KVL--NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRI 159 (656)
T ss_pred HHh--hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHH
Confidence 633 45556555542222 222222 12222222221 1 12334444443322 222344455555
Q ss_pred HHHHHHCCCCC------CHHHHHHHHH-----HH--HhcCCHHHHHHHHHHHHH--------------------------
Q 048235 149 VEDMERRGIVG------SAALYYDLAR-----CL--CSAGKCEEALMQMDKICK-------------------------- 189 (455)
Q Consensus 149 ~~~m~~~~~~~------~~~~~~~l~~-----~~--~~~g~~~~a~~~~~~m~~-------------------------- 189 (455)
++++..--+.. |-..|-.=|+ -+ -+...+..|.++++++..
T Consensus 160 Yqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~ 239 (656)
T KOG1914|consen 160 YQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVEL 239 (656)
T ss_pred HHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHH
Confidence 55554321100 0000000000 00 011222223333322211
Q ss_pred ---------cC-CC-C--c------HHHHHHHH---------------------HHHHhcCC-------HHHHHHHHHHH
Q 048235 190 ---------VA-NK-P--L------VVSYTGLI---------------------QACLDSGN-------IQNAAYIFNQM 222 (455)
Q Consensus 190 ---------~~-~~-~--~------~~~~~~li---------------------~~~~~~~~-------~~~a~~~~~~~ 222 (455)
.+ .. . + ..+|...+ +.+...|+ -+++..+++..
T Consensus 240 W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~ 319 (656)
T KOG1914|consen 240 WKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERA 319 (656)
T ss_pred HHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHH
Confidence 00 00 0 0 01111111 11122222 34455555555
Q ss_pred Hhc-CCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 048235 223 KNF-CSPNLVTCNIMVKAYLEHG---LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298 (455)
Q Consensus 223 ~~~-~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 298 (455)
..+ ...+..+|..+...--..- ..+.....+++++.... ..| ..+|-.+++.-.+..-++.|..
T Consensus 320 I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~-----------~~~-tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 320 IEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIED-----------IDL-TLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhc-----------cCC-ceehhHHHHHHHHhhhHHHHHH
Confidence 443 2334444444332211111 25556666777665431 223 4567778888888888999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCC-
Q 048235 299 VYKRMLHHGLHF-NAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVS- 376 (455)
Q Consensus 299 ~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 376 (455)
+|.++.+.+..+ +...+.+++.-++ .++.+.|.++|+.-++..+..|.- ...++..++..++-..|..+++....+
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~y-v~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEY-VLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHH-HHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 999999987777 5556666666554 788999999999988888776652 344555556889999999999976654
Q ss_pred CCccccHHHHHHHHhhhcccCCcc-hHHHHHHHhccccccc
Q 048235 377 GSPEFSRNAWLKFFKENSQHFGQD-TLIQLLHEASSSLTTR 416 (455)
Q Consensus 377 ~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~ 416 (455)
-+.+.+...|..++. ....-++ +.+-...+....-.|+
T Consensus 466 l~~~ks~~Iw~r~l~--yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLE--YESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred CChhhhHHHHHHHHH--HHHhcccHHHHHHHHHHHHHhcch
Confidence 244556799999999 5555566 5554554544445663
No 103
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=1.7e-05 Score=66.12 Aligned_cols=256 Identities=15% Similarity=0.151 Sum_probs=166.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChH
Q 048235 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTD 143 (455)
Q Consensus 64 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 143 (455)
++-+.-.|.+..++..-....... -+...-..+-++|...|.+..... .++....+....+..+......-++.+
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGKATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---ccccccCChHHHHHHHHHHhhCcchhH
Confidence 345556677877766555544332 345555566677888887665433 233332344455544444444445544
Q ss_pred HHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048235 144 EAV-SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222 (455)
Q Consensus 144 ~a~-~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 222 (455)
.-+ ++.+.+.......+......-...|+..|++++|++..+. +. +......=+..+.+..+++.|.+.++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~----~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL----GE--NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc----cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 4455555554444433333445567889999999988865 21 3334444456667888899999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 048235 223 KNFCSPNLVTCNIMVKAYLE----HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLEL 298 (455)
Q Consensus 223 ~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 298 (455)
.+. .+..|.+-|..++.+ .+...+|.-+|++|.+. ..|+..+.+....++...|++++|..
T Consensus 164 q~i--ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-------------~~~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 164 QQI--DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-------------TPPTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred Hcc--chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-------------cCCChHHHccHHHHHHHhcCHHHHHH
Confidence 873 444556656665554 46788999999999875 46899999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHhhcCCCCC
Q 048235 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVE-LLEITWEHLARADRITP 346 (455)
Q Consensus 299 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~~~ 346 (455)
++++......+ ++.+...++.+-...|... ...+.+.++...++.++
T Consensus 229 lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 229 LLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 99999885433 4556666666655666654 45567778877766655
No 104
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=4.9e-05 Score=69.58 Aligned_cols=339 Identities=12% Similarity=0.093 Sum_probs=187.8
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H
Q 048235 14 AVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPS-A 92 (455)
Q Consensus 14 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~ 92 (455)
-.+....|+++.|...|-+.... .++|...|..=..+|...|++++|++=-.+-++. .|+ .
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l----------------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~ 70 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIML----------------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWA 70 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHcc----------------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchh
Confidence 34667889999999999998743 3667788888888888888888888766666654 343 5
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc---------------------------------
Q 048235 93 TTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWRE--------------------------------- 139 (455)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--------------------------------- 139 (455)
..|+-...++.-.|++++|+.-|.+-....+.+...++.+..++...
T Consensus 71 kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~ 150 (539)
T KOG0548|consen 71 KGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVK 150 (539)
T ss_pred hHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHH
Confidence 67777777788888888888888776666555666666555554111
Q ss_pred ---------------CChHHHHHHHHHHH--------HCC-------CCC------------C----------HHHHHHH
Q 048235 140 ---------------GKTDEAVSAVEDME--------RRG-------IVG------------S----------AALYYDL 167 (455)
Q Consensus 140 ---------------g~~~~a~~~~~~m~--------~~~-------~~~------------~----------~~~~~~l 167 (455)
.+.+..+...-.+. ..+ ..| + ..-...+
T Consensus 151 ~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~l 230 (539)
T KOG0548|consen 151 ILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKEL 230 (539)
T ss_pred HHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHH
Confidence 00000111110000 000 011 0 0113346
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHH
Q 048235 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV-------TCNIMVKAY 240 (455)
Q Consensus 168 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~li~~~ 240 (455)
.+...+..+++.|.+-+....... -+..-++....+|...|.+..+...-....+...-... .+..+..+|
T Consensus 231 gnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~ 308 (539)
T KOG0548|consen 231 GNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAY 308 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Confidence 666667778888888888777765 36666777788888888777666555544332111111 222344467
Q ss_pred HhcCChhHHHHHHHHHHhcccccch------------hhccCCCCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048235 241 LEHGLFEEAMKLFQEMAEDSNHINR------------EYDKKGLVIPDI-YTFNTMLDACAAEKRWDDLELVYKRMLHHG 307 (455)
Q Consensus 241 ~~~~~~~~a~~~~~~m~~~~~~~~~------------~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 307 (455)
.+.++++.|...|.+.+.....|+. .......+.|.. .-...-...+.+.|++..|...+.+++...
T Consensus 309 ~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred hhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 7788999999999998776522111 000001111211 001111333445555555555555555543
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcC
Q 048235 308 LHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHP 374 (455)
Q Consensus 308 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 374 (455)
+-|...|..-.-+|.+.|.+..|+.-.+...+.++.....-+. -...+.-..+++.|.+.+.+..
T Consensus 389 -P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~R-Kg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 389 -PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLR-KGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred -CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 1234444444555555555555555555555443322221111 1122223445555555555544
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.75 E-value=0.0001 Score=77.37 Aligned_cols=306 Identities=12% Similarity=0.031 Sum_probs=189.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC------CCC--HhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CC----HH
Q 048235 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQ------KPS--ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PN----AL 127 (455)
Q Consensus 61 ~~li~~~~~~~~~~~a~~~~~~m~~~~~------~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~ 127 (455)
......+...|+++++...+......-- .+. ......+...+...|+++.|...+++...... .+ ..
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3444556678999999999988765311 111 11222233456689999999999998765322 22 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-c
Q 048235 128 AYKVLVNTLWREGKTDEAVSAVEDMERR----GIV-GSAALYYDLARCLCSAGKCEEALMQMDKICKV----ANK--P-L 195 (455)
Q Consensus 128 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~--~-~ 195 (455)
+.+.+...+...|++++|...+++.... |.. .....+..+...+...|++++|...+++.... +.. + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 4556667778899999999999887653 211 11234455677788899999999988876542 221 1 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccC
Q 048235 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKNF---CSP--NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270 (455)
Q Consensus 196 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 270 (455)
...+..+...+...|++++|...+++.... ..+ ....+..+...+...|++++|.+.+.+.......
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~-------- 644 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGN-------- 644 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc--------
Confidence 334455666777889999999999887543 112 2334555667788899999999999888653200
Q ss_pred CCCCCcHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHhhcCC--
Q 048235 271 GLVIPDIYTF--NTMLDACAAEKRWDDLELVYKRMLHHGLHFNA---KRHLRMILDASRAGKVELLEITWEHLARADR-- 343 (455)
Q Consensus 271 ~~~~p~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-- 343 (455)
.+........ ...+..+...|+.+.|..++............ ..+..+..++...|+.++|...++.......
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~ 724 (903)
T PRK04841 645 GRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL 724 (903)
T ss_pred ccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 0000011010 11224455678999999998775542211111 1134456667889999999999998865421
Q ss_pred -CCChHhH--HHHHHHHhhccchHHHHHHhhhcC
Q 048235 344 -ITPPALI--KERFCNRLENKDYGSAISCLVSHP 374 (455)
Q Consensus 344 -~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~~~ 374 (455)
....... ......+.+.|+.++|...+.+..
T Consensus 725 g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 725 RLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1121111 111222348899999998888664
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.74 E-value=3.6e-06 Score=72.88 Aligned_cols=66 Identities=21% Similarity=0.205 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048235 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIV-GS-AALYYDLARCLCSAGKCEEALMQMDKICKV 190 (455)
Q Consensus 125 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 190 (455)
....+..+...+...|+++.|...|+++...... |. ...+..+..++...|++++|...++++.+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555443211 00 123334444555555555555555555443
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.74 E-value=7e-06 Score=77.64 Aligned_cols=215 Identities=16% Similarity=0.102 Sum_probs=156.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048235 96 GLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175 (455)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 175 (455)
..+...+...|-...|..+|+++ ..|..++.+|...|+...|..+..+..+ -+|++..|..+........
T Consensus 402 ~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChH
Confidence 34556677888888888888776 4577788888888988888888887776 3678888888777766666
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 048235 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255 (455)
Q Consensus 176 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 255 (455)
-+++|.++.+..-.. .-..+.....+.++++++.+-|+.-.+..+.-..+|-.+..+..+.+++..|.+.|..
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 677777776543221 1111222233467888888888877666667778888888888888888888888888
Q ss_pred HHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 048235 256 MAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEIT 334 (455)
Q Consensus 256 m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 334 (455)
-.. ..| +...||.+-.+|.+.++-.+|...+++..+.+.. +...+...+....+.|.+++|.+.
T Consensus 545 cvt--------------L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 545 CVT--------------LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred Hhh--------------cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHH
Confidence 877 346 4577888888888888888888888888886533 333555566666788888888888
Q ss_pred HHHHhhcC
Q 048235 335 WEHLARAD 342 (455)
Q Consensus 335 ~~~~~~~~ 342 (455)
+.++....
T Consensus 610 ~~rll~~~ 617 (777)
T KOG1128|consen 610 YHRLLDLR 617 (777)
T ss_pred HHHHHHhh
Confidence 88875433
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.74 E-value=3.8e-06 Score=72.77 Aligned_cols=60 Identities=15% Similarity=0.095 Sum_probs=48.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048235 166 DLARCLCSAGKCEEALMQMDKICKVANK--PLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225 (455)
Q Consensus 166 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 225 (455)
.+...+...|++.+|...+....+.... .....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566788899999999999998876432 23567888999999999999999999888653
No 109
>PF12854 PPR_1: PPR repeat
Probab=98.72 E-value=2e-08 Score=56.47 Aligned_cols=32 Identities=25% Similarity=0.574 Sum_probs=22.5
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048235 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQL 83 (455)
Q Consensus 52 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 83 (455)
|..||..+||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45677777777777777777777777777666
No 110
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.71 E-value=1.1e-05 Score=78.78 Aligned_cols=100 Identities=10% Similarity=-0.021 Sum_probs=65.6
Q ss_pred HHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcc-hHHHHHHH
Q 048235 330 LLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQD-TLIQLLHE 408 (455)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~ 408 (455)
.|...+...++.+.... .....+..+-..|.+.-|.-.+-+...+.+. ....|..+.- .+-...+ |-++.+..
T Consensus 801 ~Ai~c~KkaV~L~ann~--~~WnaLGVlsg~gnva~aQHCfIks~~sep~--~~~~W~Nlgv--L~l~n~d~E~A~~af~ 874 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNE--GLWNALGVLSGIGNVACAQHCFIKSRFSEPT--CHCQWLNLGV--LVLENQDFEHAEPAFS 874 (1238)
T ss_pred HHHHHHHHHHHHhhccH--HHHHHHHHhhccchhhhhhhhhhhhhhcccc--chhheeccce--eEEecccHHHhhHHHH
Confidence 56666666655543222 2233333332446777777666555443322 4488888777 5666666 88888888
Q ss_pred hccccccccCCCchhHHHHHHhHHhhh
Q 048235 409 ASSSLTTRNGSPYPVLQNLISSCKDFL 435 (455)
Q Consensus 409 ~~~~~~p~~~~~~~~l~~~~~~~~~~~ 435 (455)
++..++|.|...+..-+.+..+.|+--
T Consensus 875 ~~qSLdP~nl~~WlG~Ali~eavG~ii 901 (1238)
T KOG1127|consen 875 SVQSLDPLNLVQWLGEALIPEAVGRII 901 (1238)
T ss_pred hhhhcCchhhHHHHHHHHhHHHHHHHH
Confidence 888899999999999999998888653
No 111
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.71 E-value=0.00022 Score=74.95 Aligned_cols=338 Identities=11% Similarity=-0.009 Sum_probs=201.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-------CC--HHHHHHHHHHH
Q 048235 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-------PN--ALAYKVLVNTL 136 (455)
Q Consensus 66 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~--~~~~~~li~~~ 136 (455)
.....|+++.+...+..+.......+..........+...|+++++..++........ +. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3455677777777776653221111222333444556688999999999887754311 11 11222333456
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--cHHHHHHHHHHHH
Q 048235 137 WREGKTDEAVSAVEDMERRGIVGSA----ALYYDLARCLCSAGKCEEALMQMDKICKVAN---KP--LVVSYTGLIQACL 207 (455)
Q Consensus 137 ~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~---~~--~~~~~~~li~~~~ 207 (455)
...|+++.|...+++..+.-...+. ...+.+...+...|++++|...+++...... .+ ...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999998764211221 3345566777889999999999988764311 11 1344566677888
Q ss_pred hcCCHHHHHHHHHHHHhc----CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC--cH
Q 048235 208 DSGNIQNAAYIFNQMKNF----CSP----NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP--DI 277 (455)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~----~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p--~~ 277 (455)
..|+++.|...+++.... ..+ ....+..+...+...|++++|...+.+....... ..+ ..
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~----------~~~~~~~ 612 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN----------YQPQQQL 612 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc----------cCchHHH
Confidence 999999999999887542 111 2234555666777889999999999887664200 112 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCH--HHH--HHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHh--
Q 048235 278 YTFNTMLDACAAEKRWDDLELVYKRMLHH--GLHFNA--KRH--LRMILDASRAGKVELLEITWEHLARADRITPPAL-- 349 (455)
Q Consensus 278 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~--~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-- 349 (455)
..+..+...+...|+.++|...+..+... ...... ... ...+..+...|+.+.|...+..........+...
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 692 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQG 692 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHH
Confidence 44555666788999999999999888652 111111 011 1112334568999999999877654322222110
Q ss_pred -HHHHHHHHhhccchHHHHHHhhhcCCCC---Cccc-cHHHHHHHHhhhcccCCcchHHHHHHHhcccc
Q 048235 350 -IKERFCNRLENKDYGSAISCLVSHPVSG---SPEF-SRNAWLKFFKENSQHFGQDTLIQLLHEASSSL 413 (455)
Q Consensus 350 -~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 413 (455)
...........|++++|...+....... +... .......+..++...++.+++...+.+.+.--
T Consensus 693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 693 QWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 1122233347899999998887654211 1111 11233333343456666667777777766633
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=4e-06 Score=79.24 Aligned_cols=221 Identities=16% Similarity=0.152 Sum_probs=179.4
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 048235 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLV 133 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 133 (455)
+|--..-..+...+...|-..+|..+|+++.. |.-++.+|+..|+..+|..+..+..+ .+|+...|..+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 34334445566778889999999999988754 45567788999999999999988887 568999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH
Q 048235 134 NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQ 213 (455)
Q Consensus 134 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 213 (455)
+......-++.|.++++..-.+ .-..+.......++++++.+.|+.-.+.+. ....+|-.+..+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhH
Confidence 9888888889999988875443 111222223347999999999998777653 35788888999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCH
Q 048235 214 NAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293 (455)
Q Consensus 214 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 293 (455)
.|.+.|.......+.+...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+-...+.|.+
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-------------~~~w~iWENymlvsvdvge~ 603 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-------------YQHWQIWENYMLVSVDVGEF 603 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-------------CCCCeeeechhhhhhhcccH
Confidence 99999999988788889999999999999999999999999999976 23456677777788899999
Q ss_pred HHHHHHHHHHHH
Q 048235 294 DDLELVYKRMLH 305 (455)
Q Consensus 294 ~~a~~~~~~m~~ 305 (455)
++|.+.+.++.+
T Consensus 604 eda~~A~~rll~ 615 (777)
T KOG1128|consen 604 EDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHHH
Confidence 999999999886
No 113
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=5.2e-05 Score=63.26 Aligned_cols=245 Identities=12% Similarity=0.062 Sum_probs=156.0
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048235 101 VMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180 (455)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 180 (455)
-+.-.|++..++..-....... .+...-.-+-++|...|.+..... +.... -.|....+..+.......++.+.-
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~---eI~~~-~~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVIS---EIKEG-KATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccc---ccccc-cCChHHHHHHHHHHhhCcchhHHH
Confidence 3444566666655444433221 233333445566777676544332 22222 234444444444444444443333
Q ss_pred -HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048235 181 -LMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 181 -~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
-.+.+.+.......+......-...|++.+++++|++..+.. -+......=+..+.+..+++-|.+.+++|.+.
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 345555655555545455555566788999999999988873 34444444456677888899999999999874
Q ss_pred ccccchhhccCCCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 048235 260 SNHINREYDKKGLVIPDIYTFNTMLDACAA----EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITW 335 (455)
Q Consensus 260 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 335 (455)
. +..|.+.|..++.+ .+.+.+|.-+|++|-+. ..|+..+.+....++...|++++|..++
T Consensus 167 d---------------ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL 230 (299)
T KOG3081|consen 167 D---------------EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLL 230 (299)
T ss_pred c---------------hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence 3 67778877777664 34688899999998874 5578888999999999999999999999
Q ss_pred HHHhhcCCCCChHhHHHHHHHHhhccchHHHH-HHhhh
Q 048235 336 EHLARADRITPPALIKERFCNRLENKDYGSAI-SCLVS 372 (455)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~ 372 (455)
+..+.++...|+.+...+.+.. ..|...++. +.+..
T Consensus 231 ~eaL~kd~~dpetL~Nliv~a~-~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 231 EEALDKDAKDPETLANLIVLAL-HLGKDAEVTERNLSQ 267 (299)
T ss_pred HHHHhccCCCHHHHHHHHHHHH-HhCCChHHHHHHHHH
Confidence 9999998888876554444443 455544443 34443
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.68 E-value=2e-05 Score=77.87 Aligned_cols=143 Identities=13% Similarity=0.126 Sum_probs=86.8
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048235 91 SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170 (455)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 170 (455)
+...+-.|..+..+.|.+++|+.+++.+.+..|.+......+..++.+.+++++|+..+++..... +-+......+..+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~ 163 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKS 163 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHH
Confidence 455666666666666666666666666666666666666666666666666666666666666554 2234445556666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 048235 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNI 235 (455)
Q Consensus 171 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 235 (455)
+.+.|++++|..+|+++...+. -+..++..+..++...|+.++|...|+...+...+....|+.
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 6666666666666666666332 235566666666666666666666666665544444444443
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.68 E-value=1e-05 Score=67.39 Aligned_cols=160 Identities=15% Similarity=0.083 Sum_probs=104.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048235 96 GLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175 (455)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 175 (455)
..+-..+...|+-+....+........+.+......++....+.|++..|...+++..... ++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 4444556666666666666666555545566666667777777777777777777766553 556667777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 048235 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQE 255 (455)
Q Consensus 176 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 255 (455)
+.+.|..-|.+..+..+. +...++.+.-.+.-.|+.+.|..++......-+-|...-..+.......|++++|.++...
T Consensus 149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 777777777776665433 4556666666677777777777777766655445666666666777777777777766554
Q ss_pred HH
Q 048235 256 MA 257 (455)
Q Consensus 256 m~ 257 (455)
-.
T Consensus 228 e~ 229 (257)
T COG5010 228 EL 229 (257)
T ss_pred cc
Confidence 33
No 116
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=3.5e-05 Score=75.51 Aligned_cols=207 Identities=13% Similarity=0.133 Sum_probs=128.3
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048235 91 SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170 (455)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 170 (455)
....|+.+..+-.+.|.+.+|.+-|-+. .|+..|..++....+.|.+++-.+.+....+....|... +.|+-+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 4456677777777777777776655433 466777788888888888888877777666665555544 457777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHH
Q 048235 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAM 250 (455)
Q Consensus 171 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 250 (455)
|++.++..+..+++ ..|+......+.+-|...+.++.|.-+|..+ ..|..|...+...|++..|.
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHH
Confidence 77877777765554 3466666677777777777777777777443 35777777777778877776
Q ss_pred HHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 048235 251 KLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330 (455)
Q Consensus 251 ~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 330 (455)
+.-++. .+..||..+-.+|...+.+.-| +|-..++-....-..-++.-|-..|-+++
T Consensus 1241 D~aRKA------------------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeE 1297 (1666)
T KOG0985|consen 1241 DAARKA------------------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEE 1297 (1666)
T ss_pred HHhhhc------------------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHH
Confidence 644332 2456666666666655443322 12122222233344455555566666666
Q ss_pred HHHHHHHHhhcC
Q 048235 331 LEITWEHLARAD 342 (455)
Q Consensus 331 a~~~~~~~~~~~ 342 (455)
...+++..+...
T Consensus 1298 lIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1298 LISLLEAGLGLE 1309 (1666)
T ss_pred HHHHHHhhhchh
Confidence 655555544333
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.68 E-value=8.5e-06 Score=67.84 Aligned_cols=157 Identities=15% Similarity=0.176 Sum_probs=124.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHH
Q 048235 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDE 144 (455)
Q Consensus 65 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 144 (455)
..|...|+++.+....+.+.. |. . .+...++.+++...+++.....+.+...|..+...|...|+++.
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Confidence 468889998887555432221 11 0 12235667788888888888888999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048235 145 AVSAVEDMERRGIVGSAALYYDLARCL-CSAGK--CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221 (455)
Q Consensus 145 a~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 221 (455)
|...|++..+.+ +.+...+..+..++ ...|+ .++|.+++++..+.... +..++..+...+...|++++|...|++
T Consensus 92 A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 92 ALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998875 34677777788764 66677 59999999999998755 788889999999999999999999999
Q ss_pred HHhcCCCCHHHHHH
Q 048235 222 MKNFCSPNLVTCNI 235 (455)
Q Consensus 222 ~~~~~~~~~~~~~~ 235 (455)
+.+..+|+..-+..
T Consensus 170 aL~l~~~~~~r~~~ 183 (198)
T PRK10370 170 VLDLNSPRVNRTQL 183 (198)
T ss_pred HHhhCCCCccHHHH
Confidence 98887887765543
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.66 E-value=9.6e-06 Score=67.52 Aligned_cols=117 Identities=9% Similarity=0.101 Sum_probs=63.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HhcCC--hhHHH
Q 048235 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY-LEHGL--FEEAM 250 (455)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~~a~ 250 (455)
.++.+++...++...+..+. +...|..+...|...|+++.|...|++..+..+.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 34445555555554444322 4555555555666666666666666655554455555555555542 44444 35566
Q ss_pred HHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 251 KLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 251 ~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
+++++..+.. | +...+..+...+...|++++|...|+++.+
T Consensus 131 ~~l~~al~~d--------------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 131 EMIDKALALD--------------ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhC--------------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666665543 3 445555555555556666666666666555
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.65 E-value=1.5e-05 Score=66.32 Aligned_cols=160 Identities=16% Similarity=0.059 Sum_probs=127.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 048235 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREG 140 (455)
Q Consensus 61 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 140 (455)
..+-..+...|+-+....+........ .-+.......+....+.|++..|...|++.....++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 444555566666666666655544322 2255566668888999999999999999999988899999999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048235 141 KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220 (455)
Q Consensus 141 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 220 (455)
++++|..-|.+..+.- .-++..++.+.-.+.-.|+.+.|..++......+.. |..+-..+.......|+++.|..+..
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 9999999999998873 334566788888888899999999999998887644 67777888889999999999998886
Q ss_pred HHH
Q 048235 221 QMK 223 (455)
Q Consensus 221 ~~~ 223 (455)
.-.
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 654
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.63 E-value=7.6e-05 Score=74.69 Aligned_cols=233 Identities=9% Similarity=0.063 Sum_probs=138.1
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHH
Q 048235 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATT-YGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKV 131 (455)
Q Consensus 53 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 131 (455)
.+.+...|..|+..+...+++++|.++.+...+. .|+... |-.+...+.+.++.+.+..+ .
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~ 88 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL----------------N 88 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh----------------h
Confidence 3557789999999999999999999999977665 444333 33333355666665544433 3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 048235 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211 (455)
Q Consensus 132 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 211 (455)
++.......++.-...+...|.+.+ -+...+..+..+|-+.|+.+++..+++++.+..+. |..+.|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-h
Confidence 3333444444444444444444432 23345666777777788888888888877777633 677777777777777 7
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccch-------hhccCCCCCCcHHHHHHHH
Q 048235 212 IQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINR-------EYDKKGLVIPDIYTFNTML 284 (455)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~~~~~p~~~~~~~li 284 (455)
+++|.+++.+... .|...+++..+.++|.++......--. ......+...-..++--+-
T Consensus 165 L~KA~~m~~KAV~--------------~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 165 KEKAITYLKKAIY--------------RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHHHHH--------------HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 7777777776643 244455555666666665554310000 0000000112233444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048235 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA 322 (455)
Q Consensus 285 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 322 (455)
..|...++|+++..+++.+.+..-. |.....-++.+|
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y 267 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFY 267 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHH
Confidence 5666677788888888887774322 444555566665
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.59 E-value=4.2e-05 Score=76.49 Aligned_cols=232 Identities=11% Similarity=0.079 Sum_probs=125.8
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048235 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ 85 (455)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 85 (455)
+...+..|+..+...+++++|.++.+..... .+-....|-.+...+.+.++...+..+ .+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~----------------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l- 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE----------------HKKSISALYISGILSLSRRPLNDSNLL--NLI- 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------------CCcceehHHHHHHHHHhhcchhhhhhh--hhh-
Confidence 4567889999999999999999999977753 122334444444466666665555444 222
Q ss_pred cCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 048235 86 QGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165 (455)
Q Consensus 86 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 165 (455)
.......++..+..+...+.. ...+..++..+..+|-+.|+.++|..+++++.+.+ +-++...|
T Consensus 91 --------------~~~~~~~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLN 154 (906)
T PRK14720 91 --------------DSFSQNLKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVK 154 (906)
T ss_pred --------------hhcccccchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHH
Confidence 222223333222333333332 12334455566666666666666666666666665 34455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Q 048235 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC-----LDSGNIQNAAYIFNQMKNF--CSPNLVTCNIMVK 238 (455)
Q Consensus 166 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-----~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~li~ 238 (455)
.+...|+.. +.++|..++.+.....+ +..-|+.+...+ ...-+++.-.++.+.+... ...-..++-.+..
T Consensus 155 n~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 155 KLATSYEEE-DKEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 666666666 66666666655544311 001111111111 0112222333333333222 2233445556667
Q ss_pred HHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHH
Q 048235 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288 (455)
Q Consensus 239 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 288 (455)
.|-..++++++..+++.+++.. +-|.....-++.+|.
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~~-------------~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEHD-------------NKNNKAREELIRFYK 268 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhcC-------------CcchhhHHHHHHHHH
Confidence 7777788888888888888754 225666666666665
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.58 E-value=6.9e-05 Score=74.11 Aligned_cols=189 Identities=13% Similarity=0.053 Sum_probs=144.1
Q ss_pred HhHHHHHHHHHHhcCCHHHH-HHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 048235 57 IVVYNAVLNACVRRKQWEGA-FWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNT 135 (455)
Q Consensus 57 ~~~~~~li~~~~~~~~~~~a-~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 135 (455)
+.....+=.+.+.-|..++| .+++.++.+ ++....+......++.-........+.+..++..|...
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i 95 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARA 95 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHH
Confidence 33333333445556666555 455555543 12222222223333333344455566789999999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH
Q 048235 136 LWREGKTDEAVSAVEDMERRGIVGS-AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQN 214 (455)
Q Consensus 136 ~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 214 (455)
..+.|.+++|..+++...+.. |+ ......++..+.+.+++++|+...++.....+. +......+..++.+.|++++
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQ 172 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHH
Confidence 999999999999999998874 54 556677899999999999999999999998754 67788889999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 215 AAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 215 a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
|..+|+++....+.+..++..+..++-..|+.++|...|++..+..
T Consensus 173 A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 173 ADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 9999999987566668899999999999999999999999998763
No 123
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=0.00012 Score=60.80 Aligned_cols=189 Identities=15% Similarity=0.153 Sum_probs=145.8
Q ss_pred cCCHHHHHHHHHHHHH---cC-CCCCHhh-HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHH
Q 048235 70 RKQWEGAFWVLQQLKQ---QG-QKPSATT-YGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDE 144 (455)
Q Consensus 70 ~~~~~~a~~~~~~m~~---~~-~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 144 (455)
..+.++.++++..+.. .| ..++..+ |..++-+...+|+.+.|..+++++....+.+..+-..-.--+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 4567888888888765 34 4555544 44555667789999999999999998876444443333334456799999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048235 145 AVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224 (455)
Q Consensus 145 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 224 (455)
|+++++.+.+.+ +.|..++..-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999999887 556667766666666788888999988888877 455999999999999999999999999999987
Q ss_pred cCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhcc
Q 048235 225 FCSPNLVTCNIMVKAYLEHG---LFEEAMKLFQEMAEDS 260 (455)
Q Consensus 225 ~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~ 260 (455)
..|.+...+..+...+...| +..-+.++|.+.++..
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 66777777777777766555 5567889999998854
No 124
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=6.6e-05 Score=72.15 Aligned_cols=249 Identities=12% Similarity=0.076 Sum_probs=168.5
Q ss_pred cccccCCCCCCCHhHHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhc-
Q 048235 45 TLERWDPRLEPDIVVYNAVLN--ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS- 121 (455)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 121 (455)
.++.|-....-|..|-..++. .|..-|+.+.|.+-.+-.+ +...|..+.++|.+..+++-|.-.+-.|...
T Consensus 714 pLrdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aR 787 (1416)
T KOG3617|consen 714 PLRDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNAR 787 (1416)
T ss_pred hHHHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhh
Confidence 344455556778888888886 4677899999988877655 5678999999999999999888777666431
Q ss_pred --------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048235 122 --------YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANK 193 (455)
Q Consensus 122 --------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 193 (455)
...+...=....-.....|.+++|..+|++-... ..|-..|-..|.+++|.++-+.--+...
T Consensus 788 gaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL- 857 (1416)
T KOG3617|consen 788 GARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL- 857 (1416)
T ss_pred hHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh-
Confidence 0111122222233345779999999999987654 3445566678999999988765443333
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------c----------CCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 048235 194 PLVVSYTGLIQACLDSGNIQNAAYIFNQMKN----------F----------CSPNLVTCNIMVKAYLEHGLFEEAMKLF 253 (455)
Q Consensus 194 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------~----------~~~~~~~~~~li~~~~~~~~~~~a~~~~ 253 (455)
..||..-..-+-..++.+.|++.|++... . ...|...|..-..-+-..|+.+.|+.+|
T Consensus 858 --r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 858 --RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred --hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHH
Confidence 34555556666677888888888776421 0 1123333444444444566666666666
Q ss_pred HHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 048235 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEI 333 (455)
Q Consensus 254 ~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 333 (455)
..... |-++++..|-.|+.++|-++-++ .| |......+.+.|...|++.+|..
T Consensus 936 ~~A~D---------------------~fs~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~ 988 (1416)
T KOG3617|consen 936 SSAKD---------------------YFSMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVK 988 (1416)
T ss_pred HHhhh---------------------hhhheeeEeeccCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHH
Confidence 66554 44566777778888888877653 33 56677788899999999999998
Q ss_pred HHHHH
Q 048235 334 TWEHL 338 (455)
Q Consensus 334 ~~~~~ 338 (455)
+|.+.
T Consensus 989 FfTrA 993 (1416)
T KOG3617|consen 989 FFTRA 993 (1416)
T ss_pred HHHHH
Confidence 87765
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=0.00017 Score=65.51 Aligned_cols=186 Identities=18% Similarity=0.195 Sum_probs=130.1
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHH
Q 048235 51 PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYK 130 (455)
Q Consensus 51 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 130 (455)
....|+...+...+.+......-..+..++.+..+. .-...-|...+ .+...|+++.|+..++.+....+.|...+.
T Consensus 268 ~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~ 344 (484)
T COG4783 268 KLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQPDNPYYLE 344 (484)
T ss_pred CCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCHHHHH
Confidence 334556666666666554443333333333322221 11233344333 345778888899888888887777888888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 048235 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGS-AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS 209 (455)
Q Consensus 131 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 209 (455)
.....+.+.++.++|.+.++.+.... |+ ......+..+|.+.|++.+|..+++........ |...|..|.++|...
T Consensus 345 ~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~ 421 (484)
T COG4783 345 LAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAEL 421 (484)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHh
Confidence 88888889999999999998888774 33 455566788888889999888888888777543 788888888998888
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048235 210 GNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
|+..++..-..+ .|...|+++.|...+....+.
T Consensus 422 g~~~~a~~A~AE-----------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 422 GNRAEALLARAE-----------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CchHHHHHHHHH-----------------HHHhCCCHHHHHHHHHHHHHh
Confidence 888777655443 456788888888888887776
No 126
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.49 E-value=2.2e-05 Score=61.82 Aligned_cols=94 Identities=14% Similarity=-0.023 Sum_probs=58.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048235 97 LVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176 (455)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 176 (455)
.+..++...|++++|...|+.+....+.+..+|..+..++...|++++|...|+.....+ +.+...+..+..++...|+
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 344555666666666666666666655666666666666666666666666666666553 3345555556666666666
Q ss_pred HHHHHHHHHHHHHcC
Q 048235 177 CEEALMQMDKICKVA 191 (455)
Q Consensus 177 ~~~a~~~~~~m~~~~ 191 (455)
+++|...|+...+..
T Consensus 108 ~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 108 PGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHHHhC
Confidence 666666666665543
No 127
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.49 E-value=0.0001 Score=72.38 Aligned_cols=131 Identities=12% Similarity=0.083 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048235 8 VAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG 87 (455)
Q Consensus 8 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 87 (455)
..|..+...|...-+...|.+.|+...+. ..-+..++.....-|++..+++.|..+.-..-+..
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeL----------------Datdaeaaaa~adtyae~~~we~a~~I~l~~~qka 556 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFEL----------------DATDAEAAAASADTYAEESTWEEAFEICLRAAQKA 556 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------------CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc
Confidence 45777777777777777777777777642 24455666666677777777777666622221111
Q ss_pred CC-CCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048235 88 QK-PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154 (455)
Q Consensus 88 ~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 154 (455)
.. .-..-|...--.|...++...+..-|+...+..|.|...|..+..+|..+|.+..|.++|.+...
T Consensus 557 ~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 557 PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 00 00111111222344555566666666655555555556666666666666666666666655443
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.46 E-value=9.6e-06 Score=63.81 Aligned_cols=109 Identities=9% Similarity=-0.019 Sum_probs=82.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048235 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC 226 (455)
Q Consensus 147 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 226 (455)
.++++..+.+ |+ .+..+...+...|++++|...|+......+. +...+..+..++...|++++|...|+......
T Consensus 14 ~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3444444432 33 2445667777888888888888888776533 67788888888888888888888888888777
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 227 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
+.+...+..+..++...|++++|...|+..++..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7788888888888888888888888888888843
No 129
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.00026 Score=69.72 Aligned_cols=360 Identities=12% Similarity=0.170 Sum_probs=213.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHH-------------------
Q 048235 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLN------------------- 65 (455)
Q Consensus 5 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~------------------- 65 (455)
.|+..-+..+.++...+-..+-+++++++.-.+. ...-+...-|.||-
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S-------------~Fse~~nLQnLLiLtAikad~trVm~YI~rLdn 1048 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNS-------------VFSENRNLQNLLILTAIKADRTRVMEYINRLDN 1048 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCc-------------ccccchhhhhhHHHHHhhcChHHHHHHHHHhcc
Confidence 4555667778899999999999999999876431 11112222222222
Q ss_pred --------HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048235 66 --------ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLW 137 (455)
Q Consensus 66 --------~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 137 (455)
.+...+-+++|..+|.+. ..+......|+. ..+.++.|.++-++. ..+.+|+.+..+-.
T Consensus 1049 yDa~~ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~-----n~p~vWsqlakAQL 1115 (1666)
T KOG0985|consen 1049 YDAPDIAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERC-----NEPAVWSQLAKAQL 1115 (1666)
T ss_pred CCchhHHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhh-----CChHHHHHHHHHHH
Confidence 223334444555554432 123344444443 344555555554443 34577888888888
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 048235 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217 (455)
Q Consensus 138 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 217 (455)
+.|.+.+|++-|-+. -|+..|..++....+.|.+++-.+++...++..-.|.. =+.|+-+|++.++..+.++
T Consensus 1116 ~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1116 QGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred hcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHH
Confidence 888888887666332 24556788888888888888888887776666555443 3567888888888776655
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 048235 218 IFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE 297 (455)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 297 (455)
++ ..||......+..-|...|.++.|.-+|... .-|..|...+...|++..|.
T Consensus 1188 fi------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------------------SN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1188 FI------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------------------SNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred Hh------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------------------hhHHHHHHHHHHHHHHHHHH
Confidence 44 2477777777788888888887776655543 33667777777888887776
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCCC
Q 048235 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSG 377 (455)
Q Consensus 298 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 377 (455)
..-++.- +..||..+-.+|...+.+.-|. |...+-+.....+.++...+-..|-+++-+.+++...--.
T Consensus 1241 D~aRKAn------s~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1241 DAARKAN------STKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred HHhhhcc------chhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh
Confidence 6554332 4557887777887666665443 3333333333334556666668899999999888765211
Q ss_pred CccccHHHHHHHHhh-hcccCCcc--hHHHHHHHhcccc-----ccccCCCchhHHHHHHhHHhhhhccCC
Q 048235 378 SPEFSRNAWLKFFKE-NSQHFGQD--TLIQLLHEASSSL-----TTRNGSPYPVLQNLISSCKDFLRTQSP 440 (455)
Q Consensus 378 ~~~~~~~~~~~l~~~-~~~~~~~~--~~~~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~~~~~~a~~~ 440 (455)
..+ .....=+.+ |....... |-.+++-..+. + --+...-|..|.-+|.+-..|+.|...
T Consensus 1310 RAH---MgmfTELaiLYskykp~km~EHl~LFwsRvN-ipKviRA~eqahlW~ElvfLY~~y~eyDNAa~t 1376 (1666)
T KOG0985|consen 1310 RAH---MGMFTELAILYSKYKPEKMMEHLKLFWSRVN-IPKVIRAAEQAHLWSELVFLYDKYEEYDNAALT 1376 (1666)
T ss_pred HHH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 111 111111111 12222111 44444332221 1 012345566777788888888776655
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=0.00019 Score=65.25 Aligned_cols=153 Identities=16% Similarity=0.130 Sum_probs=124.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 048235 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGK 141 (455)
Q Consensus 62 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 141 (455)
-..-.+...|++++|+..++.+...-+ -|..-.......+.+.++.++|.+.++++....+.....+-.+..+|.+.|+
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCC
Confidence 333445578999999999999888632 2666667777889999999999999999998877668888899999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048235 142 TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221 (455)
Q Consensus 142 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 221 (455)
+.+|+.+++...... +-++..|..|.++|...|+..++.... ..+|...|+++.|...+..
T Consensus 390 ~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 390 PQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMR 450 (484)
T ss_pred hHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHH
Confidence 999999999987764 667889999999999999988876544 3456677888888888888
Q ss_pred HHhcCCCCHHHHH
Q 048235 222 MKNFCSPNLVTCN 234 (455)
Q Consensus 222 ~~~~~~~~~~~~~ 234 (455)
.++....+..+|.
T Consensus 451 A~~~~~~~~~~~a 463 (484)
T COG4783 451 ASQQVKLGFPDWA 463 (484)
T ss_pred HHHhccCCcHHHH
Confidence 8776666655543
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=0.00052 Score=57.05 Aligned_cols=184 Identities=16% Similarity=0.124 Sum_probs=110.9
Q ss_pred CChhHHHHHHHHHHhc---C--CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048235 106 GKYNLVYEFFRKVQKS---Y--IPNA-LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE 179 (455)
Q Consensus 106 ~~~~~a~~~~~~~~~~---~--~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 179 (455)
.+.++..+++.++... + .++. ..|..++-+....|+.+.|...++++..+= +.+...-..-.-.+-..|.+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 3455666666665432 1 1233 234445555666777777777777776652 2232222222222345677777
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048235 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 180 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
|+++++.+.+.. +.|..++-.=+...-..|+.-.|++-+....+.+..|...|.-+...|...|++++|.-.++++.-.
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 777777777765 3355666555555555666667777776666667777777777777777777777777777777763
Q ss_pred ccccchhhccCCCCCC-cHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 048235 260 SNHINREYDKKGLVIP-DIYTFNTMLDACAAEK---RWDDLELVYKRMLH 305 (455)
Q Consensus 260 ~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~ 305 (455)
.| ++..+..+...+.-.| +.+.+.++|.+..+
T Consensus 184 --------------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 184 --------------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred --------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 35 4445555555443333 45566677777666
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.40 E-value=2.3e-05 Score=61.18 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=22.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048235 203 IQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258 (455)
Q Consensus 203 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 258 (455)
...+...|++++|...|+.+....+.+...|..+..++...|++++|..++++...
T Consensus 24 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 24 AYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444443333333333444444444444444444444444333
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.39 E-value=2.7e-05 Score=60.80 Aligned_cols=97 Identities=19% Similarity=0.148 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048235 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241 (455)
Q Consensus 162 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 241 (455)
.....+...+...|++++|...++.+...+. .+...+..+...+...|+++.|..+++......+.+...+..+..+|.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 3344555666666777777777666666542 255666666666667777777777777666555556666666666777
Q ss_pred hcCChhHHHHHHHHHHhc
Q 048235 242 EHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 242 ~~~~~~~a~~~~~~m~~~ 259 (455)
..|++++|...|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777777664
No 134
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.36 E-value=0.00022 Score=67.95 Aligned_cols=169 Identities=15% Similarity=0.186 Sum_probs=105.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH
Q 048235 134 NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQ 213 (455)
Q Consensus 134 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 213 (455)
.+......|.+|+.+++.+.+.... +.-|..+...|+..|+++.|.++|-+. ..++-.|.+|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 3444556777777777777665422 223566777788888888888877432 23455677888888888
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCH
Q 048235 214 NAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293 (455)
Q Consensus 214 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 293 (455)
+|.++-.+... .......|.+-..-.-++|++.+|.++|-.+- .|+ ..|..|-+.|..
T Consensus 809 da~kla~e~~~-~e~t~~~yiakaedldehgkf~eaeqlyiti~----------------~p~-----~aiqmydk~~~~ 866 (1636)
T KOG3616|consen 809 DAFKLAEECHG-PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----------------EPD-----KAIQMYDKHGLD 866 (1636)
T ss_pred HHHHHHHHhcC-chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----------------Cch-----HHHHHHHhhCcc
Confidence 88877766532 12334455555555667778877777765542 243 346677777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048235 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHL 338 (455)
Q Consensus 294 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 338 (455)
+..+++..+--...+ ..|...+..-+...|+++.|+.-|-+.
T Consensus 867 ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 867 DDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 777776654322111 235556666677777777777665443
No 135
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.32 E-value=1.1e-06 Score=50.19 Aligned_cols=35 Identities=20% Similarity=0.470 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048235 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSA 92 (455)
Q Consensus 58 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 92 (455)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.31 E-value=1.2e-06 Score=49.59 Aligned_cols=33 Identities=36% Similarity=0.673 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048235 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKP 90 (455)
Q Consensus 58 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 90 (455)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999999987
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.27 E-value=0.00015 Score=66.33 Aligned_cols=127 Identities=16% Similarity=0.151 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 048235 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240 (455)
Q Consensus 161 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 240 (455)
......|+..+...++++.|..+++++.+.. |+. ...+++.+...++..+|.+++++.....+.+......-...+
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455667777778899999999999999875 443 345778888888999999999998876777888888888889
Q ss_pred HhcCChhHHHHHHHHHHhcccccchhhccCCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 241 LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD-IYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 241 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
...++++.|+.+.+++.+. .|+ ..+|..|..+|...|+++.|+-.++.+--
T Consensus 245 l~k~~~~lAL~iAk~av~l--------------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--------------SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--------------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999999985 474 56999999999999999999998887654
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.26 E-value=3.9e-05 Score=70.15 Aligned_cols=127 Identities=16% Similarity=0.231 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048235 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLW 137 (455)
Q Consensus 58 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 137 (455)
..-.+|+..+...++++.|..+|+++.+.. |+ ....+++.+...++..+|.+++++.....+.+......-...+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 444556667777788999999999988774 44 34457777778888888888888888777777777777788888
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048235 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK 189 (455)
Q Consensus 138 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 189 (455)
+.++++.|+.+.+++.+.. +.+..+|..|..+|...|+++.|+..++.+..
T Consensus 246 ~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8899999999998888763 33456888899999999999999888887653
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.18 E-value=3.8e-06 Score=47.90 Aligned_cols=33 Identities=27% Similarity=0.515 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 048235 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311 (455)
Q Consensus 279 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 311 (455)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 799999999999999999999999999999987
No 140
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=0.00049 Score=61.24 Aligned_cols=228 Identities=12% Similarity=0.050 Sum_probs=139.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHH
Q 048235 204 QACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283 (455)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~l 283 (455)
.++.-.|+++.|.++--.+.+..+.+....-.-..++-..++.+.|...|++.+..+ |+...--.+
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--------------pdh~~sk~~ 242 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--------------PDHQKSKSA 242 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccC--------------hhhhhHHhH
Confidence 344566788888877777665433443333222334445778888888888887754 543322211
Q ss_pred -------------HHHHHHcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCh
Q 048235 284 -------------LDACAAEKRWDDLELVYKRMLH---HGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPP 347 (455)
Q Consensus 284 -------------i~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 347 (455)
.+-..+.|++..|.+.+.+.+. .+..|+...|........+.|+.++|+.-.+...+.+...-.
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 2234678999999999999887 334555566766667778999999999999988876644333
Q ss_pred HhHHHHHHHHhhccchHHHHHHhhhcCCCCCccc---------------cHHHHHHHHhhhcccCCcc-hHHHHHHHhcc
Q 048235 348 ALIKERFCNRLENKDYGSAISCLVSHPVSGSPEF---------------SRNAWLKFFKENSQHFGQD-TLIQLLHEASS 411 (455)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~ 411 (455)
+... ...+.+..++|++|.+-+++......... -+..|..++. ..+...+ |-.+...+..+
T Consensus 323 all~-ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilG--i~~~as~~eikkayrk~AL 399 (486)
T KOG0550|consen 323 ALLR-RANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILG--ISRNASDDEIKKAYRKLAL 399 (486)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhh--hhhhcccchhhhHHHHHHH
Confidence 3222 22333467888888887776443221111 1345666665 2333333 55555666666
Q ss_pred ccccccCCCc--------hhHHHHHHhHHhhhhccCCcccccCCC
Q 048235 412 SLTTRNGSPY--------PVLQNLISSCKDFLRTQSPAPVVNLTG 448 (455)
Q Consensus 412 ~~~p~~~~~~--------~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (455)
.-.|+-...- -..|+.|...+++.+......+..++.
T Consensus 400 ~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dle~ 444 (486)
T KOG0550|consen 400 VHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDLEE 444 (486)
T ss_pred HhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccchhh
Confidence 5677633322 345788888888877666655444443
No 141
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.16 E-value=0.0011 Score=63.36 Aligned_cols=109 Identities=18% Similarity=0.241 Sum_probs=51.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHH
Q 048235 204 QACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283 (455)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~l 283 (455)
.+-...++|.+|+.+++.++.. ..-..-|..+...|...|+++.|.++|.+.-. ++-.
T Consensus 740 eaai~akew~kai~ildniqdq-k~~s~yy~~iadhyan~~dfe~ae~lf~e~~~---------------------~~da 797 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQ-KTASGYYGEIADHYANKGDFEIAEELFTEADL---------------------FKDA 797 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhh-ccccccchHHHHHhccchhHHHHHHHHHhcch---------------------hHHH
Confidence 3334455555666665555431 11122344455556666666666655544321 2334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 048235 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWE 336 (455)
Q Consensus 284 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 336 (455)
|..|.+.|+|+.|.++-.+.. |.......|..-..-+-..|++.+|++++-
T Consensus 798 i~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 555556666665555543322 122222333333333455555555555543
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.14 E-value=0.01 Score=58.28 Aligned_cols=224 Identities=15% Similarity=0.136 Sum_probs=149.3
Q ss_pred HHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHh
Q 048235 16 TLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNA--CVRRKQWEGAFWVLQQLKQQGQKPSAT 93 (455)
Q Consensus 16 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~ 93 (455)
.....+++..|++...++.+. .|+. .|..++.+ +.+.|+.++|..+++.....+.. |..
T Consensus 18 d~ld~~qfkkal~~~~kllkk-----------------~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~ 78 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK-----------------HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDL 78 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH-----------------CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chH
Confidence 345678899999999998763 3443 34444444 45789999999999888877666 889
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048235 94 TYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173 (455)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 173 (455)
|...+-..|...++.++|..++++.....| +......+..+|.+.+++.+-.++--++.+. ++-....+=++++...+
T Consensus 79 tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P-~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 79 TLQFLQNVYRDLGKLDEAVHLYERANQKYP-SEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHH
Confidence 999999999999999999999999987764 4777777888899988887766555555443 23333333334444333
Q ss_pred cC-C---------HHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhc-CCCCHHHHHHHHHHH
Q 048235 174 AG-K---------CEEALMQMDKICKVANKP-LVVSYTGLIQACLDSGNIQNAAYIFN-QMKNF-CSPNLVTCNIMVKAY 240 (455)
Q Consensus 174 ~g-~---------~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~-~~~~~~~~~~li~~~ 240 (455)
.- . ..-|.+.++.+.+.+.+. +..-...-...+-..|.+++|..++. ..-+. .+-+...-+.-+..+
T Consensus 157 s~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dll 236 (932)
T KOG2053|consen 157 SIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLL 236 (932)
T ss_pred hccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 21 1 223445555555443121 11112222334456788999999984 33333 444555556667778
Q ss_pred HhcCChhHHHHHHHHHHhcc
Q 048235 241 LEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 241 ~~~~~~~~a~~~~~~m~~~~ 260 (455)
...+++.+..++-.++...|
T Consensus 237 k~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 237 KLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhcChHHHHHHHHHHHHhC
Confidence 88888888888888888876
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.14 E-value=5.3e-06 Score=46.90 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 048235 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHF 310 (455)
Q Consensus 278 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 310 (455)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999999998887
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.11 E-value=0.0004 Score=54.84 Aligned_cols=115 Identities=23% Similarity=0.227 Sum_probs=51.7
Q ss_pred cCChhHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHH
Q 048235 105 CGKYNLVYEFFRKVQKSYIPNA---LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS--AALYYDLARCLCSAGKCEE 179 (455)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 179 (455)
.++...+...++.+....+.+. .+.-.+...+...|++++|...|+........+. ......|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555554443331 2222233445555555555555555555431111 1122224444555555555
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048235 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221 (455)
Q Consensus 180 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 221 (455)
|+..++...... .....+....+.|.+.|++++|...|+.
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555554422211 1223344455555555555555555543
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.10 E-value=0.00038 Score=54.95 Aligned_cols=115 Identities=11% Similarity=0.107 Sum_probs=51.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCc--HHHHHHH
Q 048235 209 SGNIQNAAYIFNQMKNFCSPN---LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD--IYTFNTM 283 (455)
Q Consensus 209 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~--~~~~~~l 283 (455)
.++...+...++.+....+.+ ....-.+...+...|++++|...|+...... ..|+ ......|
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~------------~d~~l~~~a~l~L 91 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA------------PDPELKPLARLRL 91 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC------------CCHHHHHHHHHHH
Confidence 455555555555554433333 1222233444555555555555555555543 1111 1223334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048235 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEH 337 (455)
Q Consensus 284 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 337 (455)
...+...|++++|+..++......+ ....+...-..+.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555555555544222221 222333334445555555555555543
No 146
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.02 E-value=0.00014 Score=52.43 Aligned_cols=80 Identities=19% Similarity=0.291 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCC-CCCHhHHHHHHHHHHhcC--------CHHHHHHHH
Q 048235 10 YRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRL-EPDIVVYNAVLNACVRRK--------QWEGAFWVL 80 (455)
Q Consensus 10 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~ 80 (455)
-...|..+...+++.....+|+.+.+ .++ .|++.+|+.++.+.++.. +.-..+.+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkR---------------N~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvY 92 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKR---------------NGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVY 92 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHh---------------cCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHH
Confidence 34556677778999999999999997 677 899999999999988753 345688999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHH
Q 048235 81 QQLKQQGQKPSATTYGLVMEVMLA 104 (455)
Q Consensus 81 ~~m~~~~~~p~~~~~~~l~~~~~~ 104 (455)
++|...+++|+..||+.++..+.+
T Consensus 93 qDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 93 QDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHhccCCcHHHHHHHHHHHHH
Confidence 999999999999999999987654
No 147
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.01 E-value=0.00099 Score=59.20 Aligned_cols=216 Identities=20% Similarity=0.242 Sum_probs=122.9
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHH
Q 048235 107 KYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS-----AALYYDLARCLCSAGKCEEAL 181 (455)
Q Consensus 107 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~ 181 (455)
+++.|..+|.+.- ..|-..|++++|.+.|.+..+...... ...|.....+|.+ .++++|.
T Consensus 30 ~~e~Aa~~y~~Aa--------------~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKAA--------------NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHH
T ss_pred CHHHHHHHHHHHH--------------HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHH
Confidence 5555555555543 456677788888777776643211111 1111222222211 1333333
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHhcc
Q 048235 182 MQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH-GLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 182 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~ 260 (455)
..|...+..|...|++..|-.++..+- ..|-.. |++++|++.|++..+.-
T Consensus 95 ---------------~~~~~A~~~y~~~G~~~~aA~~~~~lA--------------~~ye~~~~d~e~Ai~~Y~~A~~~y 145 (282)
T PF14938_consen 95 ---------------ECYEKAIEIYREAGRFSQAAKCLKELA--------------EIYEEQLGDYEKAIEYYQKAAELY 145 (282)
T ss_dssp ---------------HHHHHHHHHHHHCT-HHHHHHHHHHHH--------------HHHCCTT--HHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHhcCcHHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHH
Confidence 344556677888888888877776654 355566 88999999998887642
Q ss_pred cccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHH-HHHHHHHHHHhcCChHHHHHH
Q 048235 261 NHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL-----HFNAK-RHLRMILDASRAGKVELLEIT 334 (455)
Q Consensus 261 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~p~~~-~~~~ll~~~~~~g~~~~a~~~ 334 (455)
. ..+...--..++..+...+.+.|++++|.++|+++...-. +++.. .+...+.++...|+...|.+.
T Consensus 146 ~-------~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~ 218 (282)
T PF14938_consen 146 E-------QEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKA 218 (282)
T ss_dssp H-------HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred H-------HCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 0 0000011245677788889999999999999999887432 22222 333445566889999999999
Q ss_pred HHHHhhcCCCCChHhHHHHHHHH---hhccc---hHHHHHHhhhc
Q 048235 335 WEHLARADRITPPALIKERFCNR---LENKD---YGSAISCLVSH 373 (455)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~A~~~~~~~ 373 (455)
++.....++...++.-..++..+ ++.|+ +.+|+.-+.++
T Consensus 219 ~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 219 LERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 99998777554443223344333 35555 55555544444
No 148
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.99 E-value=8.4e-05 Score=68.31 Aligned_cols=121 Identities=12% Similarity=0.070 Sum_probs=65.2
Q ss_pred CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 048235 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI---PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165 (455)
Q Consensus 89 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 165 (455)
+.+......+++.+....+++.+..++.+...... .-..+..++++.|.+.|..+.++.++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 33445555555555555555555555555544311 122334456666666666666666665555556666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 048235 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS 209 (455)
Q Consensus 166 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 209 (455)
.||..+.+.|++..|.++...|...+.-.+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666665555554444444544444444443
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.97 E-value=0.0004 Score=52.66 Aligned_cols=107 Identities=13% Similarity=0.068 Sum_probs=55.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048235 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ 88 (455)
Q Consensus 9 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 88 (455)
++-.....+.+.|++++|.+.|+.+.... ...+.....+..+..++.+.|++++|...|+.+.....
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY-------------PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP 70 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------------CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence 34445555566666666666666665310 00011133445556666666666666666666655322
Q ss_pred C--CCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHH
Q 048235 89 K--PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALA 128 (455)
Q Consensus 89 ~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 128 (455)
. .....+..+..++.+.|+.+.|...++++....+.+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 1 113344445555556666666666666665554444433
No 150
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.95 E-value=1.2e-05 Score=44.30 Aligned_cols=31 Identities=26% Similarity=0.561 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048235 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ 88 (455)
Q Consensus 58 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 88 (455)
.+||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3788899999999999999999999888764
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.95 E-value=0.00024 Score=51.02 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=8.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 048235 283 MLDACAAEKRWDDLELVYKRML 304 (455)
Q Consensus 283 li~~~~~~~~~~~a~~~~~~m~ 304 (455)
+...+...+++++|.+.++...
T Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 40 LAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444443333
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.93 E-value=0.0007 Score=51.28 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CcHHHHHHHHH
Q 048235 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIV--GSAALYYDLARCLCSAGKCEEALMQMDKICKVANK--PLVVSYTGLIQ 204 (455)
Q Consensus 129 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~li~ 204 (455)
+..+...+.+.|++++|.+.|.++.+.... .....+..+..++.+.|+++.|...++.+...... ....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444444555555555555555443210 01223333455555555555555555554443211 11233444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCC
Q 048235 205 ACLDSGNIQNAAYIFNQMKNFCSPN 229 (455)
Q Consensus 205 ~~~~~~~~~~a~~~~~~~~~~~~~~ 229 (455)
++.+.|+++.|...++++....+.+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCC
Confidence 5555555555555555554443333
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.91 E-value=0.00029 Score=50.55 Aligned_cols=92 Identities=21% Similarity=0.268 Sum_probs=51.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 048235 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGL 245 (455)
Q Consensus 166 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 245 (455)
.+...+...|++++|...++...+.... +...+..+...+...+++++|.+.|+......+.+..++..+...+...|+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 3444555555666666665555544322 234455555555556666666666665554444444555556666666666
Q ss_pred hhHHHHHHHHHHh
Q 048235 246 FEEAMKLFQEMAE 258 (455)
Q Consensus 246 ~~~a~~~~~~m~~ 258 (455)
++.|...+....+
T Consensus 84 ~~~a~~~~~~~~~ 96 (100)
T cd00189 84 YEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHc
Confidence 6666666665554
No 154
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.88 E-value=0.00034 Score=64.43 Aligned_cols=123 Identities=16% Similarity=0.147 Sum_probs=80.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhcCCCCHHH
Q 048235 156 GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA--NKPLVVSYTGLIQACLDSGNIQNAAYIFNQM-KNFCSPNLVT 232 (455)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~ 232 (455)
+.+.+......++..+....+.+.+..++.+..... ...-..|..++++.|.+.|..+.+..+++.= .-|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 445556666667777666677777777777766542 2222344557777777777777777777653 3447777777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHc
Q 048235 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE 290 (455)
Q Consensus 233 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 290 (455)
+|.|+..+.+.|++..|.++...|...+ ...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe------------~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQE------------EFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhh------------ccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777776665 445556666555555554
No 155
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.87 E-value=0.00073 Score=59.79 Aligned_cols=129 Identities=11% Similarity=0.041 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048235 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD-SGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241 (455)
Q Consensus 163 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 241 (455)
+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|......-.. .++.+.|..+|+...+..+.+...|...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45555666666666666666666665432 2233333333333222 345555666666666656666666666666666
Q ss_pred hcCChhHHHHHHHHHHhcccccchhhccCCCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD---IYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 242 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
..++.+.|..+|++....- .++ ...|...+..-.+.|+++.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~l-------------~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISSL-------------PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTS-------------SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhc-------------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666531 111 23666666666666666666666666665
No 156
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.85 E-value=0.00047 Score=60.99 Aligned_cols=130 Identities=10% Similarity=0.063 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHH-cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 048235 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA-CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTL 136 (455)
Q Consensus 58 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 136 (455)
.+|..+++...+.+..+.|..+|.+.++.+ ..+...|......-.. .++.+.|..+|+...+..+.+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356666666666666777777777776432 1233334433333223 44555577777776666666666666666666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048235 137 WREGKTDEAVSAVEDMERRGIVGSA---ALYYDLARCLCSAGKCEEALMQMDKICK 189 (455)
Q Consensus 137 ~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 189 (455)
...++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+..+..++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6777777777777666544 22221 2444455544455555555555554444
No 157
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.83 E-value=0.0019 Score=50.31 Aligned_cols=87 Identities=9% Similarity=0.066 Sum_probs=50.0
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048235 102 MLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181 (455)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 181 (455)
+...|++++|..+|+.+....+-+..-|..|..++-..|++++|+..|......+ +-++..+-.+..++...|+.+.|.
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHH
Confidence 3455666666666666555555555556666666666666666666666655554 234444555556666666666666
Q ss_pred HHHHHHHH
Q 048235 182 MQMDKICK 189 (455)
Q Consensus 182 ~~~~~m~~ 189 (455)
+.|+....
T Consensus 124 ~aF~~Ai~ 131 (157)
T PRK15363 124 KALKAVVR 131 (157)
T ss_pred HHHHHHHH
Confidence 66655444
No 158
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.81 E-value=0.0006 Score=49.21 Aligned_cols=81 Identities=17% Similarity=0.278 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCC-CCcHHHHHHHHHHHHHcC--------CHHHHHHHHHH
Q 048235 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV-IPDIYTFNTMLDACAAEK--------RWDDLELVYKR 302 (455)
Q Consensus 232 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~ 302 (455)
|....|..+...+++.....+|+.++..| + .|+..+|+.++.+.++.. ++-..+.+++.
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~------------i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqD 94 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNG------------ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQD 94 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcC------------CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHH
Confidence 44556677777799999999999999999 6 899999999999887654 24467889999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHh
Q 048235 303 MLHHGLHFNAKRHLRMILDASR 324 (455)
Q Consensus 303 m~~~~~~p~~~~~~~ll~~~~~ 324 (455)
|+..+++|+..+|+.++..+.+
T Consensus 95 iL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 95 ILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHhccCCcHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 159
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.81 E-value=2.3e-05 Score=43.08 Aligned_cols=30 Identities=17% Similarity=0.463 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048235 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGL 308 (455)
Q Consensus 279 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 308 (455)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888888888888888887664
No 160
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.80 E-value=0.0024 Score=49.81 Aligned_cols=89 Identities=9% Similarity=-0.029 Sum_probs=47.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHH
Q 048235 203 IQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFN 281 (455)
Q Consensus 203 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~ 281 (455)
...+...|++++|..+|+-+....+-+..-|-.|..++-..|++++|+..|....... | |+..+-
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--------------~ddp~~~~ 107 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--------------IDAPQAPW 107 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------------CCCchHHH
Confidence 3334455555555555555544444445555555555555555555555555555532 3 344455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 282 TMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 282 ~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
.+..++...|+.+.|.+.|+..+.
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555555554
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.80 E-value=0.002 Score=52.51 Aligned_cols=92 Identities=10% Similarity=0.105 Sum_probs=70.4
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHH
Q 048235 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPS--ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVL 132 (455)
Q Consensus 55 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 132 (455)
.....+..+...+...|++++|...|++..+....+. ...+..+..++.+.|+++.|...+++.....+.+...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 3455677788888889999999999998887544332 35677778888899999999999988887766677777777
Q ss_pred HHHHHhcCChHHHH
Q 048235 133 VNTLWREGKTDEAV 146 (455)
Q Consensus 133 i~~~~~~g~~~~a~ 146 (455)
..++...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 78887777754443
No 162
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.79 E-value=0.031 Score=52.00 Aligned_cols=188 Identities=18% Similarity=0.135 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 048235 142 TDEAVSAVEDMERRGIVGSAALYYDLARCLCSA---GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218 (455)
Q Consensus 142 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 218 (455)
.+++..+++...+.-..-+..+|..+...--.. .+.+....+++++......--..+|-.+++.-.+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 344555555544432223334444333321111 23556666777666543222245677788888888889999999
Q ss_pred HHHHHhc-CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHH
Q 048235 219 FNQMKNF-CS-PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDL 296 (455)
Q Consensus 219 ~~~~~~~-~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a 296 (455)
|.+.++. .. .++..+++++.-|| .++..-|.++|+--++.- .-++.--...+..+...++-..+
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-------------~d~p~yv~~YldfL~~lNdd~N~ 454 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-------------GDSPEYVLKYLDFLSHLNDDNNA 454 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-------------CCChHHHHHHHHHHHHhCcchhH
Confidence 9999876 33 47888888888777 578889999998877642 23445556778888888998999
Q ss_pred HHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 048235 297 ELVYKRMLHHGLHFNA--KRHLRMILDASRAGKVELLEITWEHLARADR 343 (455)
Q Consensus 297 ~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 343 (455)
..+|++....++.|+. ..|..++.--+.-|++..+.++-+++....+
T Consensus 455 R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 455 RALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 9999999988776664 5888888877899999999888888765544
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.79 E-value=0.001 Score=61.05 Aligned_cols=87 Identities=13% Similarity=0.010 Sum_probs=44.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHH
Q 048235 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAM 250 (455)
Q Consensus 171 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 250 (455)
+...|++++|+..|++..+.... +...|..+..+|...|+++.|+..++++....+.+...|..+..+|...|++++|.
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 33445555555555555544322 34444445555555555555555555554444444555555555555555555555
Q ss_pred HHHHHHHh
Q 048235 251 KLFQEMAE 258 (455)
Q Consensus 251 ~~~~~m~~ 258 (455)
..|++.++
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 55555554
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.79 E-value=0.001 Score=61.05 Aligned_cols=104 Identities=14% Similarity=0.145 Sum_probs=85.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHH
Q 048235 203 IQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFN 281 (455)
Q Consensus 203 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~ 281 (455)
...+...|+++.|+..|++..+..+.+...|..+..+|...|++++|+..+++++... | +...|.
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--------------P~~~~a~~ 74 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD--------------PSLAKAYL 74 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------cCCHHHHH
Confidence 4566788999999999999988778888899999999999999999999999999854 5 677888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048235 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA 322 (455)
Q Consensus 282 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 322 (455)
.+..+|...|++++|...|++..+ +.|+.......+..|
T Consensus 75 ~lg~~~~~lg~~~eA~~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 75 RKGTACMKLEEYQTAKAALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 888999999999999999999998 445544444444333
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.79 E-value=0.0018 Score=52.80 Aligned_cols=114 Identities=15% Similarity=0.166 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 048235 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS--AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGL 202 (455)
Q Consensus 125 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 202 (455)
....+..+...+...|++++|...|++..+.+..+. ...+..+..++...|++++|...+.+..+.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 444566666667777777777777777765432221 245566666677777777777777766665322 34455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048235 203 IQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 203 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
...+...|+...+..-++.... .+++|.+++++....
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhh
Confidence 5666666655554433332211 256677777777664
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.77 E-value=7.2e-05 Score=52.72 Aligned_cols=79 Identities=24% Similarity=0.290 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 048235 71 KQWEGAFWVLQQLKQQGQK-PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAV 149 (455)
Q Consensus 71 ~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 149 (455)
|+++.|+.+|+++.+.... |+...+..+..++.+.|+++.|..++++ ....+.+......+..++.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4444555555555443221 1222222344444444444444444444 1111122222223344444444444444444
Q ss_pred H
Q 048235 150 E 150 (455)
Q Consensus 150 ~ 150 (455)
+
T Consensus 82 ~ 82 (84)
T PF12895_consen 82 E 82 (84)
T ss_dssp H
T ss_pred h
Confidence 3
No 167
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.75 E-value=0.028 Score=50.19 Aligned_cols=294 Identities=13% Similarity=0.052 Sum_probs=189.7
Q ss_pred hHHHHHHHHH--hcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHH--HhcCCHHHHHHHHHHHH
Q 048235 9 AYRSIAVTLG--QAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNAC--VRRKQWEGAFWVLQQLK 84 (455)
Q Consensus 9 ~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~ 84 (455)
.|.++-.++. -.|+-..|.+.-.+... -+.-|......|+.+- .-.|+++.|.+-|+-|.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~----------------llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl 147 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASK----------------LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAML 147 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHh----------------hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHh
Confidence 3444444443 34677777777666542 2345666666666554 45799999999999998
Q ss_pred HcCCCCCHhhHHHHHH----HHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC
Q 048235 85 QQGQKPSATTYGLVME----VMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG-IVG 159 (455)
Q Consensus 85 ~~~~~p~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~ 159 (455)
. +..|-..=++ ..-+.|+.+.|..+-+.....-+.-...+...+...+..|+|+.|+++++.-.... +.+
T Consensus 148 ~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~ 222 (531)
T COG3898 148 D-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEK 222 (531)
T ss_pred c-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhch
Confidence 6 3333322222 23478899999998888877666677899999999999999999999999876643 233
Q ss_pred CHH--HHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 048235 160 SAA--LYYDLARCLC---SAGKCEEALMQMDKICKVANKPLV-VSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTC 233 (455)
Q Consensus 160 ~~~--~~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (455)
+.. .-..|+.+-. -..+...|...-.+..+ ..||. ..-..-..++.+.|+..++-.+++.+-+. .|.+..+
T Consensus 223 ~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~-ePHP~ia 299 (531)
T COG3898 223 DVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA-EPHPDIA 299 (531)
T ss_pred hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc-CCChHHH
Confidence 321 1112222211 12445666655555444 34442 22334557788999999999999998652 3554443
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 048235 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312 (455)
Q Consensus 234 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 312 (455)
.. ..+.+.|+ .+..-+++...... .+| +......+..+-...|++..|..--+.... ..|..
T Consensus 300 ~l--Y~~ar~gd--ta~dRlkRa~~L~s-----------lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pre 362 (531)
T COG3898 300 LL--YVRARSGD--TALDRLKRAKKLES-----------LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRE 362 (531)
T ss_pred HH--HHHhcCCC--cHHHHHHHHHHHHh-----------cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchh
Confidence 32 23344444 44444444443221 456 566777788888889999888877766666 56777
Q ss_pred HHHHHHHHHH-HhcCChHHHHHHHHHHhhcCC
Q 048235 313 KRHLRMILDA-SRAGKVELLEITWEHLARADR 343 (455)
Q Consensus 313 ~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~ 343 (455)
..|..+.+.- ...|+-.++...+-+..+...
T Consensus 363 s~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 363 SAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred hHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 7777776664 566999999998888776543
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.75 E-value=0.00011 Score=51.80 Aligned_cols=79 Identities=24% Similarity=0.293 Sum_probs=33.7
Q ss_pred CChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 048235 140 GKTDEAVSAVEDMERRGIV-GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218 (455)
Q Consensus 140 g~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 218 (455)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. .+.+.. +....-.+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555544321 1222233345555555555555555544 211111 112222334455555555555555
Q ss_pred HH
Q 048235 219 FN 220 (455)
Q Consensus 219 ~~ 220 (455)
|+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.74 E-value=0.018 Score=49.77 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=30.3
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHC
Q 048235 102 MLACGKYNLVYEFFRKVQKSYIPNALAY---KVLVNTLWREGKTDEAVSAVEDMERR 155 (455)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~ 155 (455)
+...|+++.|.+.|+.+....+.+..+- -.+..++.+.+++++|...+++..+.
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3456666666666666665544333222 23445556666666666666666654
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.73 E-value=0.00099 Score=54.13 Aligned_cols=95 Identities=8% Similarity=0.026 Sum_probs=60.1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 048235 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKP--SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLV 133 (455)
Q Consensus 56 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 133 (455)
....|..+...+...|++++|+..|++.......| ...++..+..++...|++++|...+++.....+....++..+.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 35566777777777788888888887776653322 2346666667777777777777777777665554555566665
Q ss_pred HHHH-------hcCChHHHHHHHH
Q 048235 134 NTLW-------REGKTDEAVSAVE 150 (455)
Q Consensus 134 ~~~~-------~~g~~~~a~~~~~ 150 (455)
..+. ..|+++.|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 5555 4455554444333
No 171
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.71 E-value=0.063 Score=53.10 Aligned_cols=202 Identities=12% Similarity=0.073 Sum_probs=142.5
Q ss_pred HHHHHHH--HHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048235 10 YRSIAVT--LGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG 87 (455)
Q Consensus 10 ~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 87 (455)
|..++.+ +.+.|+.++|..+++..... + ..|..|...+-.+|...++.++|..+|++....
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~---------------~-~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~- 106 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGL---------------K-GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK- 106 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccC---------------C-CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-
Confidence 4445555 45889999999999888653 1 338889999999999999999999999999875
Q ss_pred CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC----------ChHHHHHHHHHHHHCC-
Q 048235 88 QKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREG----------KTDEAVSAVEDMERRG- 156 (455)
Q Consensus 88 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------~~~~a~~~~~~m~~~~- 156 (455)
-|+......+..+|.+-+.+.+-.+.--++-+..+.....+-++++...+.- -...|.+.++.+.+.+
T Consensus 107 -~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g 185 (932)
T KOG2053|consen 107 -YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG 185 (932)
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC
Confidence 5678888888899999999887666655565555556666666666665431 1234666777776664
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048235 157 IVGSAALYYDLARCLCSAGKCEEALMQM-DKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPN 229 (455)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 229 (455)
..-+..-...-...+...|++++|.+++ ......-..-+...-+.-+..+...+++.+..++-.++....+.|
T Consensus 186 k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 186 KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 2222222222233345688999999999 445444444455666677888889999999998888886654444
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.70 E-value=0.0014 Score=53.26 Aligned_cols=93 Identities=19% Similarity=0.086 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 048235 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKP--LVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240 (455)
Q Consensus 163 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 240 (455)
.+..+...+...|++++|...|++.......+ ...++..+...+...|++++|...++......+....++..+...+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 34444555555566666666665555442221 1235555666666666666666666665544444444555555555
Q ss_pred H-------hcCChhHHHHHHHH
Q 048235 241 L-------EHGLFEEAMKLFQE 255 (455)
Q Consensus 241 ~-------~~~~~~~a~~~~~~ 255 (455)
. ..|+++.|...+++
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHH
Confidence 5 66666644444443
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.67 E-value=0.0069 Score=58.31 Aligned_cols=144 Identities=6% Similarity=-0.090 Sum_probs=105.8
Q ss_pred CCCCcHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHH
Q 048235 191 ANKPLVVSYTGLIQACLDSG-----NIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHG--------LFEEAMKLFQEMA 257 (455)
Q Consensus 191 ~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~ 257 (455)
..+.+...|...+++..... ....|..+|++..+..|.+...|..+..++.... +...+.+...+..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34567788888888865432 3778999999998877777777777666554321 1233344444433
Q ss_pred hcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048235 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEH 337 (455)
Q Consensus 258 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 337 (455)
.... ...+...|.++.-.+...|++++|...++++.+. .|+...|..+...+...|+.++|...+++
T Consensus 412 al~~-----------~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 412 ALPE-----------LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred hccc-----------CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3210 2235577887777777789999999999999994 47888888888999999999999999999
Q ss_pred HhhcCCCCCh
Q 048235 338 LARADRITPP 347 (455)
Q Consensus 338 ~~~~~~~~~~ 347 (455)
....++..|.
T Consensus 479 A~~L~P~~pt 488 (517)
T PRK10153 479 AFNLRPGENT 488 (517)
T ss_pred HHhcCCCCch
Confidence 9999988885
No 174
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.0011 Score=56.85 Aligned_cols=85 Identities=18% Similarity=0.181 Sum_probs=42.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 048235 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKL 252 (455)
Q Consensus 173 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 252 (455)
+.+++.+|+..|.+.++..+. |.+.|..=..+|++.|.++.|.+-.+......+....+|..|..+|...|++++|.+.
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~a 171 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEA 171 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 345555555555555554322 4444444455555555555555555544443344444555555555555555555555
Q ss_pred HHHHHh
Q 048235 253 FQEMAE 258 (455)
Q Consensus 253 ~~~m~~ 258 (455)
|++.++
T Consensus 172 ykKaLe 177 (304)
T KOG0553|consen 172 YKKALE 177 (304)
T ss_pred HHhhhc
Confidence 555554
No 175
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.62 E-value=0.0066 Score=45.55 Aligned_cols=89 Identities=16% Similarity=0.080 Sum_probs=40.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhc
Q 048235 169 RCLCSAGKCEEALMQMDKICKVANKPL--VVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP---NLVTCNIMVKAYLEH 243 (455)
Q Consensus 169 ~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~ 243 (455)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+|+......+. +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344445555555555555555443322 223334444455555555555555555433222 222222233344455
Q ss_pred CChhHHHHHHHHHH
Q 048235 244 GLFEEAMKLFQEMA 257 (455)
Q Consensus 244 ~~~~~a~~~~~~m~ 257 (455)
|+.++|+..+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555554443
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.61 E-value=0.0067 Score=58.41 Aligned_cols=143 Identities=9% Similarity=0.008 Sum_probs=100.1
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC--------CHHHHHHHHHHH
Q 048235 156 GIVGSAALYYDLARCLCSA-----GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG--------NIQNAAYIFNQM 222 (455)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~ 222 (455)
..+.+...|...+++.... +....|..+|++..+..+. ....|..+..++.... +...+.+.....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3456677788877775432 2377888999998887533 3455555444443221 123334444433
Q ss_pred Hhc--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 048235 223 KNF--CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300 (455)
Q Consensus 223 ~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 300 (455)
... .+.+...|.++.......|++++|...++++...+ |+...|..+...+...|+.++|.+.+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------------ps~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------------MSWLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------------CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 221 44566788888777778899999999999999954 88889999999999999999999999
Q ss_pred HHHHHcCCCCCHHHH
Q 048235 301 KRMLHHGLHFNAKRH 315 (455)
Q Consensus 301 ~~m~~~~~~p~~~~~ 315 (455)
++... +.|...+|
T Consensus 477 ~~A~~--L~P~~pt~ 489 (517)
T PRK10153 477 STAFN--LRPGENTL 489 (517)
T ss_pred HHHHh--cCCCCchH
Confidence 99988 44554454
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.55 E-value=0.00048 Score=46.13 Aligned_cols=54 Identities=19% Similarity=0.375 Sum_probs=40.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 207 LDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
.+.|++++|.++|+.+....|.+...+..+..+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 356777788888887776666677777778888888888888888888877754
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.53 E-value=0.049 Score=47.03 Aligned_cols=184 Identities=12% Similarity=0.097 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 048235 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL---YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201 (455)
Q Consensus 125 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 201 (455)
+...+-.....+.+.|++++|.+.|+++......+ ... .-.++.++.+.+++++|...+++..+..+.-...-+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 33344444555667888999999998888764322 222 23467777888889999888888887754433333333
Q ss_pred HHHHHHh--c---------------CCHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 048235 202 LIQACLD--S---------------GNIQ---NAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSN 261 (455)
Q Consensus 202 li~~~~~--~---------------~~~~---~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 261 (455)
.+.+.+. . .+.. .|...|+.+ +.-|-...-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l--------------i~~yP~S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL--------------VRGYPNSQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH--------------HHHCcCChhHHHHHHHHHHHHHH--
Confidence 3333321 1 1111 222333333 33333333344444433333221
Q ss_pred ccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048235 262 HINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH--HGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339 (455)
Q Consensus 262 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 339 (455)
.-..-+ .+...|.+.|.+..|..-++.+++ .+..........+..+|...|..++|..+...+.
T Consensus 174 -------------la~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 -------------LAKYEL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -------------HHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 011111 445567777888888888888776 2333344566677777888888888777766553
No 179
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.51 E-value=0.0016 Score=58.15 Aligned_cols=275 Identities=14% Similarity=0.071 Sum_probs=169.8
Q ss_pred CHhHHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHHcCChhHHHHHHHHHH--h----cCC
Q 048235 56 DIVVYNAVLN--ACVRRKQWEGAFWVLQQLKQQGQKPSA----TTYGLVMEVMLACGKYNLVYEFFRKVQ--K----SYI 123 (455)
Q Consensus 56 ~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~--~----~~~ 123 (455)
+...+...+. -+++.|+......+|+...+.|-. |. .+|+.|-++|.-.+++++|.++...=. . ...
T Consensus 14 ~~SCleLalEGERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdkl 92 (639)
T KOG1130|consen 14 DRSCLELALEGERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKL 92 (639)
T ss_pred hhHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchh
Confidence 3344444443 478999999999999999998855 44 345566677777788888887654311 0 001
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHH----HHCCCC-CCHHHHHHHHHHHHhcCC--------------------HH
Q 048235 124 PNALAYKVLVNTLWREGKTDEAVSAVEDM----ERRGIV-GSAALYYDLARCLCSAGK--------------------CE 178 (455)
Q Consensus 124 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~-~~~~~~~~l~~~~~~~g~--------------------~~ 178 (455)
-..-+...|...+--.|.+++|+-...+- .+.|-+ .....+..+...|...|+ ++
T Consensus 93 GEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~ 172 (639)
T KOG1130|consen 93 GEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE 172 (639)
T ss_pred ccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence 12223334555555667777776443322 222211 223344556777765553 23
Q ss_pred HHHHHHHH----HHHcCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----c--CCCCHHHHHHHHHHHHhcCChh
Q 048235 179 EALMQMDK----ICKVANK-PLVVSYTGLIQACLDSGNIQNAAYIFNQMKN----F--CSPNLVTCNIMVKAYLEHGLFE 247 (455)
Q Consensus 179 ~a~~~~~~----m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~--~~~~~~~~~~li~~~~~~~~~~ 247 (455)
.|.++|.+ +.+.|-. .--..|..|...|.-.|+++.|+...+.-.. . .......++.+..+++-.|+++
T Consensus 173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe 252 (639)
T KOG1130|consen 173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFE 252 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccH
Confidence 34444433 1222211 0123455566666667889998876654321 1 1223457888999999999999
Q ss_pred HHHHHHHHHHh----cccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 048235 248 EAMKLFQEMAE----DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH-----HGLHFNAKRHLRM 318 (455)
Q Consensus 248 ~a~~~~~~m~~----~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~l 318 (455)
.|.+.|+.... .|. ......+..+|.+.|.-..++++|+.++++-.. ....-....++++
T Consensus 253 ~A~ehYK~tl~LAielg~-----------r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSL 321 (639)
T KOG1130|consen 253 LAIEHYKLTLNLAIELGN-----------RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSL 321 (639)
T ss_pred hHHHHHHHHHHHHHHhcc-----------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999887543 331 122445666788899988999999998877543 1122245689999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcC
Q 048235 319 ILDASRAGKVELLEITWEHLARAD 342 (455)
Q Consensus 319 l~~~~~~g~~~~a~~~~~~~~~~~ 342 (455)
-.++...|..++|+.+.+.-++..
T Consensus 322 gna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 322 GNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHH
Confidence 999999999999998877665443
No 180
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.48 E-value=0.0021 Score=55.11 Aligned_cols=96 Identities=19% Similarity=0.211 Sum_probs=79.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH
Q 048235 134 NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQ 213 (455)
Q Consensus 134 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 213 (455)
.-+.+.+++++|+..|.+.++.. +-|...|..-..+|++.|.++.|++-.+..+..... ...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 45678899999999999999875 345666777899999999999999888887776533 4789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHH
Q 048235 214 NAAYIFNQMKNFCSPNLV 231 (455)
Q Consensus 214 ~a~~~~~~~~~~~~~~~~ 231 (455)
+|.+.|++..+..+.+..
T Consensus 167 ~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNES 184 (304)
T ss_pred HHHHHHHhhhccCCCcHH
Confidence 999999998875544543
No 181
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.45 E-value=0.086 Score=48.10 Aligned_cols=145 Identities=9% Similarity=-0.017 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHH
Q 048235 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHG-LHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCN 356 (455)
Q Consensus 278 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (455)
..|-..++.-.+..-++.|..+|-+..+.| +.++...+++++.-++ .|+...|..+|+.-+...+..+- -...++.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~-y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTL-YKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchH-HHHHHHHH
Confidence 456667777777777899999999999988 5677778888877654 78889999999987776655543 33455666
Q ss_pred HhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHhccccccccCCCchhHH
Q 048235 357 RLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQ 425 (455)
Q Consensus 357 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~ 425 (455)
+++-++-+.|..+++.....-...--...|..++..-..-|.-+.+..+- +...+..|+..-.-++++
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe-~rf~e~~pQen~~evF~S 543 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLE-ERFRELVPQENLIEVFTS 543 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHH-HHHHHHcCcHhHHHHHHH
Confidence 67889999999988854321111112367888877433333333333333 333336676544444433
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.43 E-value=0.011 Score=44.38 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=47.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhc
Q 048235 65 NACVRRKQWEGAFWVLQQLKQQGQKPS--ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP---NALAYKVLVNTLWRE 139 (455)
Q Consensus 65 ~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~ 139 (455)
.++-..|+.++|..+|++....|.... ...+..+...+...|++++|..+|++.....+. +......+.-++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344556666666666666666655432 233444455566666666666666666554332 222333333455555
Q ss_pred CChHHHHHHHHHHH
Q 048235 140 GKTDEAVSAVEDME 153 (455)
Q Consensus 140 g~~~~a~~~~~~m~ 153 (455)
|+.++|++.+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666554443
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.38 E-value=0.0011 Score=43.99 Aligned_cols=58 Identities=19% Similarity=0.278 Sum_probs=38.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048235 202 LIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 202 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
+...+...|++++|...|+.+.+..+.+...+..+..++...|++++|...|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455666777777777777776665556667777777777777777777777777664
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.36 E-value=0.00089 Score=44.81 Aligned_cols=50 Identities=24% Similarity=0.328 Sum_probs=21.4
Q ss_pred cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048235 105 CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154 (455)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 154 (455)
.|+++.|.++|+++....+.+..++..+..+|.+.|++++|..+++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444333444444444444444444444444444433
No 185
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.34 E-value=0.0058 Score=50.10 Aligned_cols=88 Identities=15% Similarity=0.161 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHH-------------
Q 048235 228 PNLVTCNIMVKAYLE-----HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA------------- 289 (455)
Q Consensus 228 ~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~------------- 289 (455)
.+..+|..++..|.+ .|.++=....++.|.+-| +.-|..+|+.|++.+=+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efg------------v~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFG------------VEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcC------------CcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 566666666666654 355555666667777777 66777777777776532
Q ss_pred ---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048235 290 ---EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327 (455)
Q Consensus 290 ---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 327 (455)
-.+.+-|++++++|...|+-||..++..++..+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 22456799999999999999999999999999866654
No 186
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.033 Score=48.20 Aligned_cols=109 Identities=11% Similarity=0.085 Sum_probs=82.5
Q ss_pred cCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 048235 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK---RWDDLELVYK 301 (455)
Q Consensus 225 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~ 301 (455)
..|-|...|-.|..+|...|+++.|..-|.+..+.. .++...+..+..++.... ...++..+|+
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-------------g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-------------GDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-------------CCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 367788899999999999999999999999988853 346777777777655443 3467888999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCh
Q 048235 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPP 347 (455)
Q Consensus 302 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 347 (455)
++...+. -|..+...+...+...|++.+|...|+.|++..+...+
T Consensus 218 ~al~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 218 QALALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9888432 24556666777788999999999999999877655443
No 187
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.33 E-value=0.063 Score=45.06 Aligned_cols=164 Identities=19% Similarity=0.202 Sum_probs=84.6
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---
Q 048235 101 VMLACGKYNLVYEFFRKVQKSYIP---NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA--- 174 (455)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~--- 174 (455)
.+...|+++.|...|+.+....+. ...+.-.++.++.+.|+++.|...++++.+.-......-+...+.+.+..
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~ 93 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQI 93 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhC
Confidence 345667777777777776665442 22344455666667777777777777766542111111122222222111
Q ss_pred ----------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 048235 175 ----------GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHG 244 (455)
Q Consensus 175 ----------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 244 (455)
+...+|.. .+..++.-|-......+|...+..+... =...--.+...|.+.|
T Consensus 94 ~~~~~~~~D~~~~~~A~~---------------~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 94 PGILRSDRDQTSTRKAIE---------------EFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHELYIARFYYKRG 155 (203)
T ss_dssp HHHH-TT---HHHHHHHH---------------HHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHHHHHHHHHHCTT
T ss_pred ccchhcccChHHHHHHHH---------------HHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcc
Confidence 11122222 3444455555555556666555555431 1111223566788888
Q ss_pred ChhHHHHHHHHHHhcccccchhhccCCCCCCc----HHHHHHHHHHHHHcCCHHHH
Q 048235 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPD----IYTFNTMLDACAAEKRWDDL 296 (455)
Q Consensus 245 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~a 296 (455)
.+..|..-++.+++.- |+ ......++.+|.+.|..+.+
T Consensus 156 ~y~aA~~r~~~v~~~y--------------p~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENY--------------PDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp -HHHHHHHHHHHHHHS--------------TTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cHHHHHHHHHHHHHHC--------------CCCchHHHHHHHHHHHHHHhCChHHH
Confidence 8888888888888864 43 24556677788888876644
No 188
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.2 Score=48.79 Aligned_cols=313 Identities=13% Similarity=0.092 Sum_probs=182.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCC
Q 048235 11 RSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQW--EGAFWVLQQLKQQGQ 88 (455)
Q Consensus 11 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~ 88 (455)
..+|.-+...+.+..|+++-..+... - ......|......+.+..+. +++++..++=.....
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p---------------~-~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLP---------------E-SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCc---------------c-ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 34567788889999999998888641 1 11156666666666666432 233333333222222
Q ss_pred CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC------
Q 048235 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-----PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI------ 157 (455)
Q Consensus 89 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------ 157 (455)
.....|..+.+-...+|+.+.|..+++.=..... .+..-+...+.-..+.|+.+....++-.+...-.
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~ 583 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM 583 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777789999998888765332211 2445566677777888888888877776654311
Q ss_pred -----CCCHHHHHHHHH--------HHHhcCCHHHHHHHHHHH------HHcCCCCcHHHHHHHHHHHHhcCCHH-----
Q 048235 158 -----VGSAALYYDLAR--------CLCSAGKCEEALMQMDKI------CKVANKPLVVSYTGLIQACLDSGNIQ----- 213 (455)
Q Consensus 158 -----~~~~~~~~~l~~--------~~~~~g~~~~a~~~~~~m------~~~~~~~~~~~~~~li~~~~~~~~~~----- 213 (455)
+.....|.-+++ .+...++..++..-|..- ...+..|+ ......++.+.....
T Consensus 584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka 660 (829)
T KOG2280|consen 584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKA 660 (829)
T ss_pred HHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHH
Confidence 111122222222 011112222222111110 00122222 223334444433311
Q ss_pred -----HHHHHHHHHHhc--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHH
Q 048235 214 -----NAAYIFNQMKNF--CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286 (455)
Q Consensus 214 -----~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 286 (455)
+-.++.+.+... ....-.+.+--+..+...|+..+|.++-.+.. .||...|-.=+.+
T Consensus 661 ~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----------------ipdKr~~wLk~~a 724 (829)
T KOG2280|consen 661 LEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----------------IPDKRLWWLKLTA 724 (829)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----------------CcchhhHHHHHHH
Confidence 112223333222 22333445556677788899999988777653 4888999888999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHH
Q 048235 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSA 366 (455)
Q Consensus 287 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 366 (455)
++..++|++-+++-+.++. +.-|.-++.+|.+.|+.++|.+++.++... .+....+++.|++.+|
T Consensus 725 La~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eA 789 (829)
T KOG2280|consen 725 LADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEA 789 (829)
T ss_pred HHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHH
Confidence 9999999988877766553 234556788899999999999998776321 1455666788999999
Q ss_pred HHHhhhcC
Q 048235 367 ISCLVSHP 374 (455)
Q Consensus 367 ~~~~~~~~ 374 (455)
.++.-+..
T Consensus 790 ad~A~~~r 797 (829)
T KOG2280|consen 790 ADLAAEHR 797 (829)
T ss_pred HHHHHHhc
Confidence 98655443
No 189
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.29 E-value=0.12 Score=46.38 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHh
Q 048235 8 VAYRSIAVTLGQAGHIKELFDVIDSM 33 (455)
Q Consensus 8 ~~~~~li~~~~~~g~~~~A~~~~~~~ 33 (455)
++|..+.....+.|+.+-|..+++.=
T Consensus 1 IS~a~IA~~A~~~GR~~LA~~LL~~E 26 (319)
T PF04840_consen 1 ISYAEIARKAYEEGRPKLATKLLELE 26 (319)
T ss_pred CCHHHHHHHHHHcChHHHHHHHHHcC
Confidence 36778888888999999999988764
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.02 Score=49.43 Aligned_cols=102 Identities=20% Similarity=0.211 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCHHHHH
Q 048235 158 VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS---GNIQNAAYIFNQMKNFCSPNLVTCN 234 (455)
Q Consensus 158 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~ 234 (455)
+.|...|..|...|...|+.+.|...|....+... ++...+..+..++... ....++..+|+++....+.|+.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45678889999999999999999999999888643 3566666666665543 3467899999999888888999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 235 IMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 235 ~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
.|...+...|++.+|...|+.|++..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 99999999999999999999999965
No 191
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.28 E-value=0.0074 Score=49.50 Aligned_cols=106 Identities=16% Similarity=0.243 Sum_probs=75.6
Q ss_pred CCCCHhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHH
Q 048235 53 LEPDIVVYNAVLNACVRR-----KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNAL 127 (455)
Q Consensus 53 ~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 127 (455)
...+..+|..++..|.+. |.++-....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F-------- 112 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF-------- 112 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh--------
Confidence 467888899999888754 6778888888999999999999999999886543 2221 111222221
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048235 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176 (455)
Q Consensus 128 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 176 (455)
.-| -.+-+-|++++++|...|+.||..|+..+++.+.+.+.
T Consensus 113 ------~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ------MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111 13456788899999999999999999999888866554
No 192
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.27 E-value=0.12 Score=45.96 Aligned_cols=203 Identities=15% Similarity=0.178 Sum_probs=108.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcC----C--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048235 99 MEVMLACGKYNLVYEFFRKVQKSY----I--PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172 (455)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~----~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 172 (455)
...|...+++++|.+.|.+..... . .-...|.....+|.+. ++++|+..+++. +..|.
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A---------------~~~y~ 105 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA---------------IEIYR 105 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH---------------HHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH---------------HHHHH
Confidence 345566677777777766653211 0 1112233333344333 666666555544 44556
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhc----CCC--CHHHHHHHHHHHHhcCC
Q 048235 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS-GNIQNAAYIFNQMKNF----CSP--NLVTCNIMVKAYLEHGL 245 (455)
Q Consensus 173 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~----~~~--~~~~~~~li~~~~~~~~ 245 (455)
..|++..|-..+..+ ...|-.. |+++.|.+.|++..+. ..+ -..++..+...+.+.|+
T Consensus 106 ~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 106 EAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred hcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 677777766555443 3334444 5666666666665432 111 12345566778899999
Q ss_pred hhHHHHHHHHHHhcccccchhhccCCCCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHH
Q 048235 246 FEEAMKLFQEMAEDSNHINREYDKKGLVIPDI-YTFNTMLDACAAEKRWDDLELVYKRMLHH--GLHFN--AKRHLRMIL 320 (455)
Q Consensus 246 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~--~~~~~~ll~ 320 (455)
+++|.++|++....... ....+.+. ..|...+-++...|+...|.+.+++.... ++..+ ......|+.
T Consensus 171 y~~A~~~~e~~~~~~l~-------~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLE-------NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHHHHHHHHHHTCCC-------HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc-------ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 99999999998764310 00011222 23334455677789999999999998863 33333 345556676
Q ss_pred HHH--hcCChHHHHHHHHHHh
Q 048235 321 DAS--RAGKVELLEITWEHLA 339 (455)
Q Consensus 321 ~~~--~~g~~~~a~~~~~~~~ 339 (455)
+|- ....++.+..-|+.+.
T Consensus 244 A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 244 AYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHhCCHHHHHHHHHHHcccC
Confidence 662 2334555555555554
No 193
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.27 E-value=0.025 Score=44.65 Aligned_cols=70 Identities=23% Similarity=0.338 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHH
Q 048235 94 TYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER-----RGIVGSAAL 163 (455)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~ 163 (455)
+...++..+...|+++.|..+.+.+....|.+...|..+|.+|...|+...|.++|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444566677788888888888888877777888888888888888888888888877643 477777654
No 194
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.25 E-value=5.2e-05 Score=42.46 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=27.5
Q ss_pred HhccccccccCCCchhHHHHHHhHHhhhhcc
Q 048235 408 EASSSLTTRNGSPYPVLQNLISSCKDFLRTQ 438 (455)
Q Consensus 408 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~ 438 (455)
+++.+++|+|+.+|..||.+|...|++++|+
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3445599999999999999999999999886
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.25 E-value=0.0021 Score=43.17 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 048235 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHG-LFEEAMKLFQEMAE 258 (455)
Q Consensus 196 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~ 258 (455)
..+|..+...+...|++++|+..|++..+..+.+...|..+..+|...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4556666666666677777777776666655566666666666676666 56777776666665
No 196
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.23 E-value=0.16 Score=46.52 Aligned_cols=359 Identities=9% Similarity=0.035 Sum_probs=184.9
Q ss_pred HhcCCHHHHHHHHHHHHHc--CCCCC------------HhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-----CCHHH
Q 048235 68 VRRKQWEGAFWVLQQLKQQ--GQKPS------------ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-----PNALA 128 (455)
Q Consensus 68 ~~~~~~~~a~~~~~~m~~~--~~~p~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~ 128 (455)
.+.+.+..|++.+....++ +..|. -..=++.++.+...|.+.++..+++++..... -+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 4566777777777666554 22211 11113344556677777777777777765432 26667
Q ss_pred HHHHHHHHHhcC--------C-------hHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 048235 129 YKVLVNTLWREG--------K-------TDEAVSAVEDMERR------GIVGSAALYYDLARCLCSA--GKCEEALMQMD 185 (455)
Q Consensus 129 ~~~li~~~~~~g--------~-------~~~a~~~~~~m~~~------~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 185 (455)
|+.++-.+++.- . ++.+.-...+|... .+.|....+..++....-. .+..--+++++
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 776554444321 1 11111122222211 2233333334344333321 12222333443
Q ss_pred HHHHcCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048235 186 KICKVANKPLV-VSYTGLIQACLDSGNIQNAAYIFNQMKNF-----CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 186 ~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
.....-+.|+- -+...++..+.+ +.+++..+-+.+... ...-..++..++....+.++..+|-+.+.-+...
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 33444445542 233444444444 455555554444221 2234567888899999999999999999888764
Q ss_pred ccccchhhccCCCCCCcHHHHHH-------HHHHHH----HcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHhcC
Q 048235 260 SNHINREYDKKGLVIPDIYTFNT-------MLDACA----AEKRWDDLELVYKRMLHHGLHFNAKRHLRM--ILDASRAG 326 (455)
Q Consensus 260 ~~~~~~~~~~~~~~~p~~~~~~~-------li~~~~----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l--l~~~~~~g 326 (455)
. |+...-.. +-+..+ ..-+...-+.+|+.....++.--......+ ...+.+.|
T Consensus 328 d--------------p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g 393 (549)
T PF07079_consen 328 D--------------PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIG 393 (549)
T ss_pred C--------------CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcC
Confidence 3 44331111 111122 111234456677777776553222222222 22367777
Q ss_pred C-hHHHHHHHHHHhhcCCCCChHhHHHHHH--------HHhhccchHHHHH---HhhhcCCCCCccccHHHHHHHHhh--
Q 048235 327 K-VELLEITWEHLARADRITPPALIKERFC--------NRLENKDYGSAIS---CLVSHPVSGSPEFSRNAWLKFFKE-- 392 (455)
Q Consensus 327 ~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~A~~---~~~~~~~~~~~~~~~~~~~~l~~~-- 392 (455)
. -++|..+++.+.+-.. .+-....... .++......+-+. ++++....+-...+...=+.+..+
T Consensus 394 ~~dekalnLLk~il~ft~--yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEy 471 (549)
T PF07079_consen 394 QCDEKALNLLKLILQFTN--YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEY 471 (549)
T ss_pred CccHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHH
Confidence 7 7789999998876442 2211222222 2222222222222 333333333333333444444444
Q ss_pred hcccCCcchHHHHHHHhccccccccCCCchhHHHHHHhHHhhhhccCCcccccC
Q 048235 393 NSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQSPAPVVNL 446 (455)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (455)
.+.+|.. ...-....++.++.| ++.+|..+|-.+....+|.+|-...+.++.
T Consensus 472 Lysqgey-~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 472 LYSQGEY-HKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHhcccH-HHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 2333444 444456678888999 999999999999999999999877655443
No 197
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.016 Score=52.04 Aligned_cols=171 Identities=9% Similarity=-0.006 Sum_probs=119.1
Q ss_pred CcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHhhcCCCCChHhHH
Q 048235 275 PDIYTFNTMLD-ACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILD--ASRAGKVELLEITWEHLARADRITPPALIK 351 (455)
Q Consensus 275 p~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 351 (455)
|.-.+|..+-. ++...|+.++|.+.--...+.. ++. .+..++++ +--.++.+.|...|++.+..++.+..+-..
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--ATN-AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cch-hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH
Confidence 55566665543 5667899999998888777732 222 34444444 356788899999999998888777654222
Q ss_pred HH-----------HHHHhhccchHHHHHHhhhcCC-CC-CccccHHHHHHHHhhhcccCCcchHHHHHHHhccccccccC
Q 048235 352 ER-----------FCNRLENKDYGSAISCLVSHPV-SG-SPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNG 418 (455)
Q Consensus 352 ~~-----------~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 418 (455)
.. .....+.|.+..|.+++.+... +| +...++..|......+...++.++++.-+.+.+. ++|.-.
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~-iD~syi 321 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK-IDSSYI 321 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh-cCHHHH
Confidence 11 1223478999999999998764 44 3333456666666666777888899988887777 999999
Q ss_pred CCchhHHHHHHhHHhhhhccCCcc-cccCCCC
Q 048235 419 SPYPVLQNLISSCKDFLRTQSPAP-VVNLTGT 449 (455)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~ 449 (455)
.++..-++.+...++|++|....+ .+.+.++
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999987655432 4444433
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.097 Score=44.29 Aligned_cols=135 Identities=16% Similarity=0.149 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCHHHHHH-----
Q 048235 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKV----- 131 (455)
Q Consensus 58 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~----- 131 (455)
...+.++..+.-.+.+.-...++.+.++...+.+......|.+.-.+.||.+.|...|+.+.+... .+....+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 445667777777888888889999999877677888888888888999999999999997765322 33333333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048235 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANK 193 (455)
Q Consensus 132 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 193 (455)
....|.-.+++..|...+.+....+ ..++...|.-.-+..-.|+..+|++.++.|....+.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 3345666788888888888887765 344555555555555678999999999998886543
No 199
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.18 E-value=0.032 Score=52.99 Aligned_cols=222 Identities=18% Similarity=0.195 Sum_probs=109.6
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHH---------HHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCC--
Q 048235 4 YPDTVAYRSIAVTLGQAGHIKELFDVI---------DSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQ-- 72 (455)
Q Consensus 4 ~p~~~~~~~li~~~~~~g~~~~A~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-- 72 (455)
.|....+.+-+..|...|.+++|.++- +.+.. ...+.-.++..=.+|.+.++
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~-----------------~ALeAL~f~~ARkAY~rVRdl~ 615 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAM-----------------EALEALDFETARKAYIRVRDLR 615 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccceecchHHHHHH-----------------HHHhhhhhHHHHHHHHHHhccH
Confidence 455556666677788888888887642 21111 02334445556667776665
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHH-----HHHHHHHhcCChHHHHH
Q 048235 73 WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYK-----VLVNTLWREGKTDEAVS 147 (455)
Q Consensus 73 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~a~~ 147 (455)
+-+...-+++|+++|-.|+..... ..++-.|.+.+|.++|.+-.... .-...|+ -+..-+...|..++-..
T Consensus 616 ~L~li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EAAklFk~~G~en-RAlEmyTDlRMFD~aQE~~~~g~~~eKKm 691 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLLLA---DVFAYQGKFHEAAKLFKRSGHEN-RALEMYTDLRMFDYAQEFLGSGDPKEKKM 691 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHHHHHHHHcCchh-hHHHHHHHHHHHHHHHHHhhcCChHHHHH
Confidence 445555577788888878766544 33456677777777775542211 1111111 12333444455544444
Q ss_pred HHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH------HHHcCCC---CcHHHHHHHHHHHHhcCCHHHHH
Q 048235 148 AVEDMER--RGIVGSAALYYDLARCLCSAGKCEEALMQMDK------ICKVANK---PLVVSYTGLIQACLDSGNIQNAA 216 (455)
Q Consensus 148 ~~~~m~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~------m~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 216 (455)
+.++=.+ .++.-... -...+...|+.++|..+.-+ +.+.+-+ .+..+...+...+-+...+..|-
T Consensus 692 L~RKRA~WAr~~kePka----AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAa 767 (1081)
T KOG1538|consen 692 LIRKRADWARNIKEPKA----AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAA 767 (1081)
T ss_pred HHHHHHHHhhhcCCcHH----HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHH
Confidence 4433221 11111111 12233345666666544321 1111111 12333444444444455566666
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048235 217 YIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258 (455)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 258 (455)
++|..|-. ...++......+++++|+.+-++.-+
T Consensus 768 eIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 768 EIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcc
Confidence 66666532 12345555666666666666555433
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.12 Score=43.74 Aligned_cols=146 Identities=18% Similarity=0.135 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048235 109 NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188 (455)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 188 (455)
+...+.|++-. ..+.+.++.++.-.|.+.-.+.++.+..+.+.+.++.....|++.-.+.|+.+.|...|+...
T Consensus 166 ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 166 ESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred hhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 44455554433 245667888888889999999999999998877888888999999999999999999999887
Q ss_pred HcCCCCcHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 189 KVANKPLVVSYTGLI-----QACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 189 ~~~~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
+..-+.|..+.+.++ ..|.-.+++..|...|.++....+.|+...|.-.-+..-.|+..+|++.++.|.+.-
T Consensus 240 k~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 240 KVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred HHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 665555555554443 345567889999999999988777888888877777777899999999999999854
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.14 E-value=0.012 Score=51.23 Aligned_cols=103 Identities=11% Similarity=0.088 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD----IYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 230 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
...|...+..+.+.|++++|...|+.+++.. |+ ...+..+...|...|++++|...|+.+.+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--------------P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--------------PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--------------cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555567799999999999999864 54 35677788899999999999999999987
Q ss_pred c-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 048235 306 H-GLHF-NAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346 (455)
Q Consensus 306 ~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 346 (455)
. .-.| ....+..+...+...|+.++|..+|+.+.+..+...
T Consensus 209 ~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 209 NYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 3 1111 233555566667889999999999999998876554
No 202
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.13 E-value=0.0026 Score=42.06 Aligned_cols=53 Identities=25% Similarity=0.337 Sum_probs=23.5
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048235 102 MLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154 (455)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 154 (455)
+.+.|+++.|...|+++....+.+..++..+..++...|++++|...|+++.+
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444433444444444444444444444444444433
No 203
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.13 E-value=0.12 Score=43.31 Aligned_cols=63 Identities=19% Similarity=0.157 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048235 130 KVLVNTLWREGKTDEAVSAVEDMERRGIV--GSAALYYDLARCLCSAGKCEEALMQMDKICKVAN 192 (455)
Q Consensus 130 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 192 (455)
-.....+...|++.+|...|+.+...... --....-.++.++.+.|+++.|...++.+.+..+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 33444556677777777777777765211 1123344567777777777777777777776543
No 204
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.12 E-value=0.0027 Score=42.60 Aligned_cols=39 Identities=28% Similarity=0.301 Sum_probs=14.1
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 048235 102 MLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREG 140 (455)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 140 (455)
+...|+++.|+..|.+.....+.+..+|..+..+|.+.|
T Consensus 13 ~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~ 51 (69)
T PF13414_consen 13 YFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG 51 (69)
T ss_dssp HHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 333333333333333333333333333333333333333
No 205
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.10 E-value=0.02 Score=43.46 Aligned_cols=93 Identities=8% Similarity=-0.004 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchh-----hccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048235 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE-----YDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303 (455)
Q Consensus 229 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-----~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 303 (455)
|..++..+|.++++.|+.+....+++..= |+.++.. ........|+..+..+++.+|+..+++..|.++.+..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~f 78 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFF 78 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 45567777778888888777777665432 2222221 2344557889999999999999999999999999998
Q ss_pred HH-cCCCCCHHHHHHHHHHHH
Q 048235 304 LH-HGLHFNAKRHLRMILDAS 323 (455)
Q Consensus 304 ~~-~~~~p~~~~~~~ll~~~~ 323 (455)
.+ .+++.+..+|..|+.-+.
T Consensus 79 s~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 79 SRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHcCCCCCHHHHHHHHHHHH
Confidence 87 778878888888887653
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.06 E-value=0.11 Score=41.53 Aligned_cols=101 Identities=15% Similarity=0.149 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCHHHHHHH
Q 048235 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC--SPNLVTCNIM 236 (455)
Q Consensus 159 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l 236 (455)
|++..-..|..++...|+..+|...|.+...--+--|......+.++....+++..|...++.+.+.. ..++.+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 44444444555555555555555555555443334445555555555555555555555555554321 1112223344
Q ss_pred HHHHHhcCChhHHHHHHHHHHhc
Q 048235 237 VKAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 237 i~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
.+.+...|.+.+|..-|+.....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh
Confidence 45555555555555555555553
No 207
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.01 E-value=0.37 Score=46.68 Aligned_cols=206 Identities=13% Similarity=0.063 Sum_probs=122.5
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCC--------CHhHHHHHHHHHHhcCCHHH
Q 048235 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEP--------DIVVYNAVLNACVRRKQWEG 75 (455)
Q Consensus 4 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~ 75 (455)
.|-+..|..+..+....-.++.|...|-+.... .|++. +...-.+=+. +--|.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY--------------~Gik~vkrl~~i~s~~~q~aei~--~~~g~fee 752 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY--------------AGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEE 752 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc--------------cchhHHHHhhhhhhHHHHhHhHh--hhhcchhH
Confidence 466777777777777777777777777666542 12211 1111111111 22478888
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048235 76 AFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY--IPNALAYKVLVNTLWREGKTDEAVSAVEDME 153 (455)
Q Consensus 76 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 153 (455)
|.++|-+|-++++ .+..+.+.|++-.+.++++.-.... ..-..+|+.+...++....|++|.+.|..-.
T Consensus 753 aek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 753 AEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8888877766532 3566677788877766654321111 0123678888888888888888888886542
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 048235 154 RRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTC 233 (455)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (455)
.. ...+.++....++++-..+.+.+ +-+....-.+.+++.+.|.-++|.+.|-+-.. |-
T Consensus 824 ~~---------e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~---pk---- 882 (1189)
T KOG2041|consen 824 DT---------ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL---PK---- 882 (1189)
T ss_pred ch---------HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC---cH----
Confidence 21 22456666666665554444333 22445556677778888888887777655422 22
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 048235 234 NIMVKAYLEHGLFEEAMKLFQEM 256 (455)
Q Consensus 234 ~~li~~~~~~~~~~~a~~~~~~m 256 (455)
..+.+|...+++.+|.++-++.
T Consensus 883 -aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 883 -AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhc
Confidence 3455667777777777665553
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.97 E-value=0.026 Score=49.20 Aligned_cols=100 Identities=11% Similarity=0.110 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCC
Q 048235 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPN---LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGL 272 (455)
Q Consensus 196 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 272 (455)
...|...+..+.+.|++++|...|+.+....|.+ ...+-.+..+|...|++++|...|+.+.+...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP----------- 211 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP----------- 211 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----------
Confidence 3445555555566678888888888876654333 34666777788888888888888888876430
Q ss_pred CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048235 273 VIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306 (455)
Q Consensus 273 ~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 306 (455)
..| ....+..+...+...|+.++|..+|+.+++.
T Consensus 212 ~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 212 KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 011 2445555566677788888888888887773
No 209
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.96 E-value=0.14 Score=40.99 Aligned_cols=127 Identities=13% Similarity=0.097 Sum_probs=68.4
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCC
Q 048235 193 KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKG 271 (455)
Q Consensus 193 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 271 (455)
-|++..--.|..+....|+..+|...|++...+ ...|......+.++....+++..|...++.+.+.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p---------- 155 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP---------- 155 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC----------
Confidence 344444455666666666666666666666655 555566666666666666666666666666655430
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 048235 272 LVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLE 332 (455)
Q Consensus 272 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 332 (455)
-..++.+-..+.+.+...|....|...|+...+. .|+...-...-..+.+.|+.+++.
T Consensus 156 -a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 156 -AFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred -ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 0012233334455666666666666666666663 233322222223345555555443
No 210
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.91 E-value=0.42 Score=46.29 Aligned_cols=241 Identities=10% Similarity=0.129 Sum_probs=139.9
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHhhHHH----H--HHHHHHcCChhHHHHHHHHHHhcCCCCH
Q 048235 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ-QGQKPSATTYGL----V--MEVMLACGKYNLVYEFFRKVQKSYIPNA 126 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~----l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 126 (455)
.|.+..|..+.......-.++.|...|-+... .|++.-...-+. + ...-+--|++++|++++-.+.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr----- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR----- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh-----
Confidence 67888888888887777778888777766654 233211000000 0 01112346777777777666543
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 048235 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGI--VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204 (455)
Q Consensus 127 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 204 (455)
...|..+.+.|++-...++++.- ..+. ..-...++.+...++....+++|.+.+..-... ...+.
T Consensus 764 ---DLAielr~klgDwfrV~qL~r~g-~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~e 830 (1189)
T KOG2041|consen 764 ---DLAIELRKKLGDWFRVYQLIRNG-GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIE 830 (1189)
T ss_pred ---hhhHHHHHhhhhHHHHHHHHHcc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHH
Confidence 23455666677776666555321 0110 111345677777777777777777766542211 22445
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHH
Q 048235 205 ACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284 (455)
Q Consensus 205 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li 284 (455)
++.+...+++-+.+-+. .+.+....-.+..++...|.-++|.+.|-+--. | .+.+
T Consensus 831 cly~le~f~~LE~la~~----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----------------p-----kaAv 885 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLART----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----------------P-----KAAV 885 (1189)
T ss_pred HHHHHHhhhhHHHHHHh----cCcccchHHHHHHHHHhhchHHHHHHHHHhccC----------------c-----HHHH
Confidence 55555555554444443 445666777888899999999999887755322 2 2456
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--------------HHHHHHHHhcCChHHHHHHHHHHhhc
Q 048235 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRH--------------LRMILDASRAGKVELLEITWEHLARA 341 (455)
Q Consensus 285 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--------------~~ll~~~~~~g~~~~a~~~~~~~~~~ 341 (455)
..|...++|.+|.++-++..- |...|. .--|..+.++|+.-.|.+++.+|.+.
T Consensus 886 ~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 886 HTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 678888888888887765432 111111 11234456777777777777777543
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.91 E-value=0.0081 Score=40.73 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=44.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 204 QACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
..|.+.++++.|.++++.+....|.+...|.....++...|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456777888888888888777667777777777788888888888888888887754
No 212
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.83 E-value=0.32 Score=43.13 Aligned_cols=102 Identities=12% Similarity=0.047 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCC
Q 048235 197 VSYTGLIQACLDSGNIQ---NAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV 273 (455)
Q Consensus 197 ~~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 273 (455)
.+...++.+|...+..+ +|..+++.+....+..+.++-.-+..+.+.++.+.+.+++.+|...-
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~------------- 151 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV------------- 151 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-------------
Confidence 45667777777776654 45555556655444445566566677777888888888888888753
Q ss_pred CCcHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHcCCCCCH
Q 048235 274 IPDIYTFNTMLDAC---AAEKRWDDLELVYKRMLHHGLHFNA 312 (455)
Q Consensus 274 ~p~~~~~~~li~~~---~~~~~~~~a~~~~~~m~~~~~~p~~ 312 (455)
.-....+..++..+ ... ....+...+..+....+.|..
T Consensus 152 ~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 152 DHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred ccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 21334444444443 332 345666777776665455544
No 213
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.79 E-value=0.51 Score=44.97 Aligned_cols=391 Identities=9% Similarity=-0.004 Sum_probs=220.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048235 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDI-VVYNAVLNACVRRKQWEGAFWVLQQLKQQG 87 (455)
Q Consensus 9 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 87 (455)
.|+.+|..--+....+.+..++..++.. .|-. --|-.....=.+.|..+.+.++|++-.. |
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k-----------------yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-a 108 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK-----------------YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-A 108 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh-----------------CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-h
Confidence 4555555555555666777777777732 3444 3566666666788889999999999886 4
Q ss_pred CCCCHhhHHHHHHHHH-HcCChhHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 048235 88 QKPSATTYGLVMEVML-ACGKYNLVYEFFRKVQKSYI---PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163 (455)
Q Consensus 88 ~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 163 (455)
++.+...|...+.-+. ..|+.+.....|+....... .+...|...|.--..++++.....++++.++.-...-...
T Consensus 109 ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~ 188 (577)
T KOG1258|consen 109 IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRH 188 (577)
T ss_pred hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHH
Confidence 6667777777665444 45677778888888765422 5778888888888888999999999998876421111111
Q ss_pred HHHHHHHHHh-----cCCHHHHHHHHHHHHH--------------------cCCCCcH--HHHHHHHH-------HHHhc
Q 048235 164 YYDLARCLCS-----AGKCEEALMQMDKICK--------------------VANKPLV--VSYTGLIQ-------ACLDS 209 (455)
Q Consensus 164 ~~~l~~~~~~-----~g~~~~a~~~~~~m~~--------------------~~~~~~~--~~~~~li~-------~~~~~ 209 (455)
|.......-. ....+++.++-..... .+.+.+. ...+.+-. ++...
T Consensus 189 f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s 268 (577)
T KOG1258|consen 189 FDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKS 268 (577)
T ss_pred HHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhh
Confidence 2211111111 1223333333222221 0000000 00111111 11111
Q ss_pred CCHHHHHHHHHHHHh----c----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHH
Q 048235 210 GNIQNAAYIFNQMKN----F----CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281 (455)
Q Consensus 210 ~~~~~a~~~~~~~~~----~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~ 281 (455)
.........|+.-.. . .+++..+|..-+.--...|+++.+.-+|++..-. +..-...|-
T Consensus 269 ~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-------------cA~Y~efWi 335 (577)
T KOG1258|consen 269 EEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-------------CALYDEFWI 335 (577)
T ss_pred HhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-------------HhhhHHHHH
Confidence 222222223332211 1 3345678888888889999999999999987653 222345666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhcc
Q 048235 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENK 361 (455)
Q Consensus 282 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (455)
..+......|+.+-|..++....+--.+-.+.+...-..-+-..|++..|..+++.+.+..+-.-..+...+.. ..+.|
T Consensus 336 ky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~-e~r~~ 414 (577)
T KOG1258|consen 336 KYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINW-ERRKG 414 (577)
T ss_pred HHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhH-HHHhc
Confidence 66666666799999988888777743332332222222224667899999999999987762222222111111 23777
Q ss_pred chHHHH---HHhhhcCCCC-CccccHHHHHHHHhh-hcccCCcchHHHHHHHhccccccccCCCchhHHHHHHhHH
Q 048235 362 DYGSAI---SCLVSHPVSG-SPEFSRNAWLKFFKE-NSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCK 432 (455)
Q Consensus 362 ~~~~A~---~~~~~~~~~~-~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 432 (455)
..+.+. +++....... +.......+..+..- +.+++..+.+. .....+.+..|++...|..+..+...++
T Consensus 415 ~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~-~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 415 NLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLAR-IILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred chhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHH-HHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 777777 4444332211 111111111111111 23444444444 4444455588988888888877776666
No 214
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.78 E-value=0.066 Score=40.64 Aligned_cols=101 Identities=13% Similarity=0.075 Sum_probs=70.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048235 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ 85 (455)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 85 (455)
|..++..+|.++++.|+++....+++..-.-..........-.-+....|+..+..+++.+|+..+++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 56789999999999999999999998765321000000000111244568888888888888888888888888888766
Q ss_pred -cCCCCCHhhHHHHHHHHHHcC
Q 048235 86 -QGQKPSATTYGLVMEVMLACG 106 (455)
Q Consensus 86 -~~~~p~~~~~~~l~~~~~~~~ 106 (455)
-+++.+..+|..|++-.....
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhc
Confidence 456667778887776544433
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.76 E-value=0.008 Score=47.47 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 048235 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118 (455)
Q Consensus 60 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 118 (455)
...++..+...|++++|..+...+....+- +...|..+|.+|.+.|+...|.+.|+++
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 333444444444444444444444443222 3444444444444444444444444443
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.70 E-value=0.47 Score=43.30 Aligned_cols=166 Identities=10% Similarity=0.020 Sum_probs=108.5
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHhcC----CCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHH
Q 048235 92 ATTYGLVMEVMLACGKYNLVYEFFRKVQKSY----IPNALAYKVLVNTLWR---EGKTDEAVSAVEDMERRGIVGSAALY 164 (455)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~ 164 (455)
..+...++-.|....+++...++.+.+.... ..+..+-.....++.+ .|+.++|++++..+......+++.+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3334445556889999999999999997652 1234444455667777 89999999999997777678888899
Q ss_pred HHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-H---HHHHHHH---HHH--Hhc-
Q 048235 165 YDLARCLCS---------AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN-I---QNAAYIF---NQM--KNF- 225 (455)
Q Consensus 165 ~~l~~~~~~---------~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~---~~a~~~~---~~~--~~~- 225 (455)
..+.+.|-. ....++|...|.+--+.. ||...--.+...+.-.|. + .+..++- ..+ .++
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 888877642 224677877777655533 443322122222222222 1 2223333 111 122
Q ss_pred --CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048235 226 --CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 226 --~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
...+-..+.+++.++.-.|+.++|.+..++|...
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3345566778899999999999999999999975
No 217
>PRK15331 chaperone protein SicA; Provisional
Probab=96.65 E-value=0.097 Score=41.24 Aligned_cols=92 Identities=15% Similarity=0.088 Sum_probs=64.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh
Q 048235 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLF 246 (455)
Q Consensus 167 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 246 (455)
...-+...|++++|..+|.-+...++. +..-+..|..++-..+++++|...|...-.....|+..+--...+|...|+.
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 344455678888888888887776544 4555666777777778888888888776544334444455567778888888
Q ss_pred hHHHHHHHHHHhc
Q 048235 247 EEAMKLFQEMAED 259 (455)
Q Consensus 247 ~~a~~~~~~m~~~ 259 (455)
+.|...|....+.
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888877763
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.63 E-value=0.017 Score=39.13 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=23.8
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048235 102 MLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMER 154 (455)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 154 (455)
|.+.++++.|.++++.+....|.+...|.....++.+.|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444443
No 219
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.51 E-value=0.35 Score=46.40 Aligned_cols=166 Identities=12% Similarity=0.123 Sum_probs=112.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCc-----HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHH
Q 048235 164 YYDLARCLCSAGKCEEALMQMDKICKVA-NKPL-----VVSYTGLIQACLD----SGNIQNAAYIFNQMKNFCSPNLVTC 233 (455)
Q Consensus 164 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~~-----~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (455)
+..++....-.|+-+.+++.+.+..+.+ +.-. .-.|...+..++. ....+.|.+++..+.+..|....-.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 3445666667899999999998866543 2211 2234444444443 4567889999999987655444444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 048235 234 NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK 313 (455)
Q Consensus 234 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 313 (455)
-.-.+.+...|+.++|++.|++....... ..+.....+--+.-.+.-..+|++|.+.|..+.+.. ..+..
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~---------~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka 340 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSE---------WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKA 340 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhh---------HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHH
Confidence 44556777899999999999987642200 011234455556677888999999999999999842 34555
Q ss_pred HHHHHHHHH-HhcCCh-------HHHHHHHHHHh
Q 048235 314 RHLRMILDA-SRAGKV-------ELLEITWEHLA 339 (455)
Q Consensus 314 ~~~~ll~~~-~~~g~~-------~~a~~~~~~~~ 339 (455)
+|..+..+| ...|+. ++|.++|.++.
T Consensus 341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 666655554 778888 88888888874
No 220
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.44 E-value=0.064 Score=48.31 Aligned_cols=275 Identities=15% Similarity=0.098 Sum_probs=165.4
Q ss_pred hhHHHHHH--HHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHH
Q 048235 8 VAYRSIAV--TLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPD----IVVYNAVLNACVRRKQWEGAFWVLQ 81 (455)
Q Consensus 8 ~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~ 81 (455)
..|...+. -+|+.|+......+|+...+- | ..| ..+|..|..+|.-.+++++|++...
T Consensus 16 SCleLalEGERLck~gdcraGv~ff~aA~qv---------------G-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 16 SCLELALEGERLCKMGDCRAGVDFFKAALQV---------------G-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHHHHHHHHHHHhccchhhhHHHHHHHHHh---------------c-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 34444444 489999999999999999862 2 223 3467778888888999999988643
Q ss_pred H--HHHc--CCCC-CHhhHHHHHHHHHHcCChhHHHHHHH-HH---HhcC--CCCHHHHHHHHHHHHhcCC---------
Q 048235 82 Q--LKQQ--GQKP-SATTYGLVMEVMLACGKYNLVYEFFR-KV---QKSY--IPNALAYKVLVNTLWREGK--------- 141 (455)
Q Consensus 82 ~--m~~~--~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~-~~---~~~~--~~~~~~~~~li~~~~~~g~--------- 141 (455)
. .... |-+. ...+...|-+.+--.|.+++|.-.-. .+ .+.+ .....++..+...|...|+
T Consensus 80 hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee 159 (639)
T KOG1130|consen 80 HDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEE 159 (639)
T ss_pred hhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhh
Confidence 2 1111 1110 12222333344445566666544322 21 1111 1234566666666655432
Q ss_pred -----------hHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCC-CcHHHHH
Q 048235 142 -----------TDEAVSAVEDMER----RGIV-GSAALYYDLARCLCSAGKCEEALMQMDKI----CKVANK-PLVVSYT 200 (455)
Q Consensus 142 -----------~~~a~~~~~~m~~----~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m----~~~~~~-~~~~~~~ 200 (455)
++.|.++|.+=++ .|-. .--..|..|...|.-.|+++.|+...+.- .+-|-+ .....+.
T Consensus 160 ~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~s 239 (639)
T KOG1130|consen 160 KGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHS 239 (639)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Confidence 2334444433221 2211 11234566777777789999998766542 222322 1245678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----c--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCC
Q 048235 201 GLIQACLDSGNIQNAAYIFNQMKN----F--CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI 274 (455)
Q Consensus 201 ~li~~~~~~~~~~~a~~~~~~~~~----~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 274 (455)
.+..++.-.|+++.|.+.|+.-.. . ......+.-+|..+|.-..++.+|+.++.+-+..--. -....
T Consensus 240 NlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe-------L~Dri 312 (639)
T KOG1130|consen 240 NLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE-------LEDRI 312 (639)
T ss_pred ccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhh
Confidence 889999999999999998886532 1 2233455667888898889999999888765432100 00011
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 275 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
-....+-+|..+|...|..++|+.+.....+
T Consensus 313 Ge~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 313 GELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2456777899999999999999988777654
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.42 E-value=0.0071 Score=41.69 Aligned_cols=69 Identities=20% Similarity=0.231 Sum_probs=52.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048235 7 TVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPD-IVVYNAVLNACVRRKQWEGAFWVLQQLKQ 85 (455)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 85 (455)
..+|+.+...|...|++++|++.|++.... .+.+.. ..|+ ..+++.+...+...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~---------~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDI---------EEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---------HHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------HHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346899999999999999999999998742 001111 1233 67889999999999999999999988764
No 222
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.40 E-value=0.77 Score=42.24 Aligned_cols=149 Identities=11% Similarity=0.102 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 048235 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRG-IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLI 203 (455)
Q Consensus 125 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 203 (455)
-..+|...+..-.+..-++.|..+|-+..+.+ +.+++..+++++..++. |+..-|..+|+.=...- +.+..-.+..+
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f-~d~~~y~~kyl 473 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF-PDSTLYKEKYL 473 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC-CCchHHHHHHH
Confidence 34677788888888888999999999999988 66778888988887764 88888999997644332 22333335566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHH
Q 048235 204 QACLDSGNIQNAAYIFNQMKNFCSPN--LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281 (455)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~ 281 (455)
..+...++-+.|..+|+.....+..+ ...|..+|.--..-|+...+..+=++|.+ +-|-..+..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--------------~~pQen~~e 539 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--------------LVPQENLIE 539 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--------------HcCcHhHHH
Confidence 77788899999999999665543344 66788899888888999999888888887 446655555
Q ss_pred HHHHHHHH
Q 048235 282 TMLDACAA 289 (455)
Q Consensus 282 ~li~~~~~ 289 (455)
...+-|.-
T Consensus 540 vF~Sry~i 547 (660)
T COG5107 540 VFTSRYAI 547 (660)
T ss_pred HHHHHHhh
Confidence 55555543
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.38 E-value=0.016 Score=39.89 Aligned_cols=69 Identities=19% Similarity=0.316 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD-IYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 230 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
..+++.+...|...|++++|+..|++.++.... .+...|+ ..++..+...|...|++++|.+++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQ-------LGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-------TTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356888899999999999999999988764200 0001232 56788888999999999999999998765
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.37 E-value=0.78 Score=41.91 Aligned_cols=99 Identities=15% Similarity=0.094 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCcHH
Q 048235 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRG---IVGSAALYYDLARCLCS---AGKCEEALMQMDKICKVANKPLVV 197 (455)
Q Consensus 124 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 197 (455)
.+..+...++-+|....+++..+++++.+.... +.-....-....-++.+ .|+.++|++++..+......++..
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 355555677777999999999999999998762 12222222335556666 899999999999976666677888
Q ss_pred HHHHHHHHHHhc---------CCHHHHHHHHHHH
Q 048235 198 SYTGLIQACLDS---------GNIQNAAYIFNQM 222 (455)
Q Consensus 198 ~~~~li~~~~~~---------~~~~~a~~~~~~~ 222 (455)
+|..+...|-.. ...++|...|.+.
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg 252 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKG 252 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHH
Confidence 998888776432 2355666666654
No 225
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.35 E-value=0.17 Score=47.86 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=103.9
Q ss_pred HHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH
Q 048235 16 TLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY 95 (455)
Q Consensus 16 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 95 (455)
...-.|+++++.+..+.-.-. + .-+....+.++..+-+.|..+.|+++..+-..
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll--------------~--~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~---------- 323 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL--------------P--NIPKDQGQSIARFLEKKGYPELALQFVTDPDH---------- 323 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG--------------G--G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH----------
T ss_pred HHHHcCChhhhhhhhhhhhhc--------------c--cCChhHHHHHHHHHHHCCCHHHHHhhcCChHH----------
Confidence 344578888887777622110 1 12256688899999999999999987654322
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048235 96 GLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175 (455)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 175 (455)
-.....++|+++.|.++.++. .+...|..|.....+.|+++-|.+.|.+..+ +..|+-.|...|
T Consensus 324 --rFeLAl~lg~L~~A~~~a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g 387 (443)
T PF04053_consen 324 --RFELALQLGNLDIALEIAKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTG 387 (443)
T ss_dssp --HHHHHHHCT-HHHHHHHCCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT
T ss_pred --HhHHHHhcCCHHHHHHHHHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhC
Confidence 234456899999998875443 4778999999999999999999999977532 556777778889
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048235 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222 (455)
Q Consensus 176 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 222 (455)
+.+.-.++.+.....|- ++....++.-.|+.++..+++.+-
T Consensus 388 ~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 388 DREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 98888777777666652 455556666778888877777654
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.33 E-value=0.1 Score=44.59 Aligned_cols=108 Identities=14% Similarity=0.155 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCC
Q 048235 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH-HGLH 309 (455)
Q Consensus 231 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~ 309 (455)
..|+.-+.. .+.|++..|.+.|...++... .+.. ....+-.|..++...|++++|..+|..+.+ .+-.
T Consensus 143 ~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP--------~s~~--~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s 211 (262)
T COG1729 143 KLYNAALDL-YKSGDYAEAEQAFQAFIKKYP--------NSTY--TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS 211 (262)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcCC--------CCcc--cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC
Confidence 357766654 457789999999999998761 0011 234566689999999999999999999988 4433
Q ss_pred CC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHh
Q 048235 310 FN-AKRHLRMILDASRAGKVELLEITWEHLARADRITPPAL 349 (455)
Q Consensus 310 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 349 (455)
|. +..+.-|..+..+.|+.++|..+|+++.+..|..+.+.
T Consensus 212 ~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 212 PKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 33 35777888888999999999999999999987776543
No 227
>PRK11906 transcriptional regulator; Provisional
Probab=96.32 E-value=0.54 Score=43.74 Aligned_cols=166 Identities=10% Similarity=0.051 Sum_probs=114.6
Q ss_pred HHH--HHHHHHHHhc-----CCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHH
Q 048235 197 VSY--TGLIQACLDS-----GNIQNAAYIFNQMK---NFCSPNLVTCNIMVKAYLEH---------GLFEEAMKLFQEMA 257 (455)
Q Consensus 197 ~~~--~~li~~~~~~-----~~~~~a~~~~~~~~---~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~ 257 (455)
..| ...+.+.... ...+.|..+|.+.. +..|.....|..+..++... ....+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 5555555442 23567888899887 33444466666665555432 23456778888888
Q ss_pred hcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHH
Q 048235 258 EDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA-KRHLRMILDASRAGKVELLEITWE 336 (455)
Q Consensus 258 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~ 336 (455)
+.+ +-|......+..+....++++.|...|++... +.||. .+|...-..+.-+|+.++|.+.++
T Consensus 332 eld-------------~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 332 DIT-------------TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred hcC-------------CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 865 34788888888888888889999999999998 55664 344444455678999999999999
Q ss_pred HHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCCC
Q 048235 337 HLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSG 377 (455)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 377 (455)
+..+..|......+......++-....++|+.++-+-..+.
T Consensus 397 ~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETESE 437 (458)
T ss_pred HHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccccc
Confidence 98888877666555555553444667888888776554443
No 228
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.17 E-value=0.93 Score=40.87 Aligned_cols=111 Identities=22% Similarity=0.216 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 048235 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311 (455)
Q Consensus 232 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 311 (455)
+.+..|.-+...|+...|.++-.+. ..|+...|..-+.+++..++|++..++... .- +
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----------------kv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--s 236 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----------------KVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--S 236 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----------------CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--C
Confidence 4455567778889988888876665 248999999999999999999988876542 11 3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcC
Q 048235 312 AKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHP 374 (455)
Q Consensus 312 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 374 (455)
+.-|..++.+|.+.|...+|..++..+ ++ ...+..+++.|++.+|.+..-+..
T Consensus 237 PIGyepFv~~~~~~~~~~eA~~yI~k~------~~----~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 237 PIGYEPFVEACLKYGNKKEASKYIPKI------PD----EERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred CCChHHHHHHHHHCCCHHHHHHHHHhC------Ch----HHHHHHHHHCCCHHHHHHHHHHcC
Confidence 457888999999999999999998873 22 245555578999999998665543
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.17 E-value=0.1 Score=48.19 Aligned_cols=65 Identities=18% Similarity=0.156 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048235 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV--VSYTGLIQACLDSGNIQNAAYIFNQMKN 224 (455)
Q Consensus 160 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~ 224 (455)
+...++.+..+|...|++++|+..|++..+..+.... .+|..+..+|...|+.++|++.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555666666666666666666665554322111 2455566666666666666666666554
No 230
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.12 Score=46.65 Aligned_cols=124 Identities=13% Similarity=0.123 Sum_probs=81.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc---------------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhc
Q 048235 204 QACLDSGNIQNAAYIFNQMKNF---------------CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD 268 (455)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 268 (455)
+.|.+.|++..|..-|++.... ...-..+++.+..+|.+.+++..|++.-.+.+..+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-------- 287 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-------- 287 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--------
Confidence 4455666666666665554321 11223457778888888899999998888888864
Q ss_pred cCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCChH-HHHHHHHHHhhcC
Q 048235 269 KKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA-SRAGKVE-LLEITWEHLARAD 342 (455)
Q Consensus 269 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~-~a~~~~~~~~~~~ 342 (455)
++|....-.=..+|...|+++.|...|+++++ +.|+......=+..| .+..... ...++|..|....
T Consensus 288 -----~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 288 -----PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred -----CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45777777778888888999999999998888 556655444444443 3333333 3356777775443
No 231
>PRK15331 chaperone protein SicA; Provisional
Probab=96.10 E-value=0.17 Score=39.94 Aligned_cols=85 Identities=12% Similarity=-0.034 Sum_probs=36.9
Q ss_pred HcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048235 104 ACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183 (455)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 183 (455)
..|++++|..+|+-+....+-+..-|..|..++-..++++.|+..|......+. -|+..+.....++...|+.+.|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHH
Confidence 444555555555444443333444444444444444555555544444333221 1111122234444445555555554
Q ss_pred HHHHHH
Q 048235 184 MDKICK 189 (455)
Q Consensus 184 ~~~m~~ 189 (455)
|.....
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 444443
No 232
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.09 E-value=1 Score=40.68 Aligned_cols=295 Identities=17% Similarity=0.094 Sum_probs=168.0
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH--HHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048235 59 VYNAVLNACVR--RKQWEGAFWVLQQLKQQGQKPSATTYGLVMEV--MLACGKYNLVYEFFRKVQKSYIPNALAYKVLVN 134 (455)
Q Consensus 59 ~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 134 (455)
.|..|-.++.. .|+-..|.++-.+..+. +.-|..-...++.+ -.-.|+++.|.+-|+.|......-.--...|.-
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyl 162 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYL 162 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHH
Confidence 35555555443 46667776665554432 22344444445443 335688999999999887531111122223333
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcHHH--HHHHHHHHHh---
Q 048235 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA-NKPLVVS--YTGLIQACLD--- 208 (455)
Q Consensus 135 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~--~~~li~~~~~--- 208 (455)
.--+.|+.+.|.++-+..-..- +.-.......+...|..|+++.|+++++.-.... +.+++.- -..|+.+-..
T Consensus 163 eAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 3446788888888777765543 2224556778888888999999999888765442 3334221 2223322111
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHH
Q 048235 209 SGNIQNAAYIFNQMKNFCSPNLV-TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDAC 287 (455)
Q Consensus 209 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 287 (455)
..+...|...-.+..+ ..|+.. .--.-..++.+.|+..++-.+++.+-+.. |.+..+... .+
T Consensus 242 dadp~~Ar~~A~~a~K-L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--------------PHP~ia~lY--~~ 304 (531)
T COG3898 242 DADPASARDDALEANK-LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--------------PHPDIALLY--VR 304 (531)
T ss_pred cCChHHHHHHHHHHhh-cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--------------CChHHHHHH--HH
Confidence 1234444444443333 344433 33345677888999999999999988754 544444322 23
Q ss_pred HHcCCHHHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHh--hccch
Q 048235 288 AAEKRWDDLELVYKRMLH-HGLHFN-AKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRL--ENKDY 363 (455)
Q Consensus 288 ~~~~~~~~a~~~~~~m~~-~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 363 (455)
.+.| +.+..-+++..+ ..++|| ..+...+..+-...|++..|..--+...... |...+..++..+- +.|+.
T Consensus 305 ar~g--dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~---pres~~lLlAdIeeAetGDq 379 (531)
T COG3898 305 ARSG--DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA---PRESAYLLLADIEEAETGDQ 379 (531)
T ss_pred hcCC--CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC---chhhHHHHHHHHHhhccCch
Confidence 4444 445555555554 335565 3456666777788888888877666665443 3333333333332 56888
Q ss_pred HHHHHHhhhcCCCC
Q 048235 364 GSAISCLVSHPVSG 377 (455)
Q Consensus 364 ~~A~~~~~~~~~~~ 377 (455)
.++.+.+-.....|
T Consensus 380 g~vR~wlAqav~AP 393 (531)
T COG3898 380 GKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHHHHHhcCC
Confidence 88887776544433
No 233
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.90 E-value=0.18 Score=43.17 Aligned_cols=97 Identities=20% Similarity=0.160 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCHHHHHHHH
Q 048235 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKP--LVVSYTGLIQACLDSGNIQNAAYIFNQMKNF---CSPNLVTCNIMV 237 (455)
Q Consensus 163 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~li 237 (455)
.|+.-+ .+.+.|++..|...|....+..+.- ....+-.|..++...|++++|..+|..+.+. .+.-+.+.--|.
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 355433 3345666777777777777664321 2344556777777777777777777777654 222345566666
Q ss_pred HHHHhcCChhHHHHHHHHHHhcc
Q 048235 238 KAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
.+..+.|+.++|..+|+++.+.-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC
Confidence 66777777777777777777653
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.82 E-value=0.89 Score=43.66 Aligned_cols=180 Identities=18% Similarity=0.158 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCH------HHHHHHHHHHHh----cCChH
Q 048235 75 GAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNA------LAYKVLVNTLWR----EGKTD 143 (455)
Q Consensus 75 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~------~~~~~li~~~~~----~g~~~ 143 (455)
-..-+|+-+... ++| .+..++....-.||-+.+++.+.+..+... ..+ -.|+..+..++. ..+.+
T Consensus 175 ~G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 175 FGFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 345566666664 344 345556666778888888888887765432 222 244555544443 45678
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048235 144 EAVSAVEDMERRGIVGSAALYYD-LARCLCSAGKCEEALMQMDKICKVA---NKPLVVSYTGLIQACLDSGNIQNAAYIF 219 (455)
Q Consensus 144 ~a~~~~~~m~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~ 219 (455)
.|.++++.+.++- |+...|.. -.+.+...|++++|.+.|+...... .+.....+--+...+.-..+|++|...|
T Consensus 251 ~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 8999999988763 55444433 4556667899999999999755321 1223445556777788899999999999
Q ss_pred HHHHhcCCCCHHHHHHHH-HHHHhcCCh-------hHHHHHHHHHHhcc
Q 048235 220 NQMKNFCSPNLVTCNIMV-KAYLEHGLF-------EEAMKLFQEMAEDS 260 (455)
Q Consensus 220 ~~~~~~~~~~~~~~~~li-~~~~~~~~~-------~~a~~~~~~m~~~~ 260 (455)
..+.+...-+...|.-+. .++...++. ++|.++|.+.....
T Consensus 329 ~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 329 LRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 999775444444444433 334456777 88888888876543
No 235
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.32 Score=44.06 Aligned_cols=96 Identities=15% Similarity=0.156 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC
Q 048235 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275 (455)
Q Consensus 196 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p 275 (455)
..+++.|.-+|.+.+++..|++.-+......++|....-.-..++...|+++.|...|+++++ +.|
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--------------~~P 322 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--------------LEP 322 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--------------hCC
Confidence 345777888899999999999999999888889998888889999999999999999999999 558
Q ss_pred cHHHHHH-HHHHHHHcCCH-HHHHHHHHHHHH
Q 048235 276 DIYTFNT-MLDACAAEKRW-DDLELVYKRMLH 305 (455)
Q Consensus 276 ~~~~~~~-li~~~~~~~~~-~~a~~~~~~m~~ 305 (455)
+...-.. |+..-.+..+. +...++|..|..
T Consensus 323 ~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 323 SNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5544444 44433333333 344677887775
No 236
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.78 E-value=0.48 Score=44.84 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 048235 198 SYTGLIQACLDSGNIQNAAYIF 219 (455)
Q Consensus 198 ~~~~li~~~~~~~~~~~a~~~~ 219 (455)
.|..|.....+.|+++-|++.|
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~ 370 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECY 370 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3333333333333333333333
No 237
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=95.76 E-value=2.2 Score=42.56 Aligned_cols=235 Identities=13% Similarity=0.107 Sum_probs=93.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHhc--
Q 048235 133 VNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVAN-KPLVVSYTGLIQACLDS-- 209 (455)
Q Consensus 133 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~-- 209 (455)
...+.-.|+++.|++.+-+ ..+...+..++...+..| |-+......-..+..... .|...-+..||..|.+.
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445556788888877765 222334444444333322 211111111122221110 11124567788888763
Q ss_pred -CCHHHHHHHHHHHHhcCCCC-HHHHH-HHHHHHHhcCChhHHHHHHHHHHhcccccchhhcc---CCCCC-CcHHH---
Q 048235 210 -GNIQNAAYIFNQMKNFCSPN-LVTCN-IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK---KGLVI-PDIYT--- 279 (455)
Q Consensus 210 -~~~~~a~~~~~~~~~~~~~~-~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---~~~~~-p~~~~--- 279 (455)
.++..|.++|--+.....|+ ...+. ++-......++++ .++-.+...|.+....... --+.. ++...
T Consensus 340 ~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~---~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i 416 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFD---LLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREI 416 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HH---HHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHH---HHCCCCCCCCccccceeeccccccCCCCcHHHHHHH
Confidence 57788888887776532222 22222 2222222233222 1222222233221111111 00011 22222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCC-----------hHHHHHHHHHHhhcCCC---
Q 048235 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASR-AGK-----------VELLEITWEHLARADRI--- 344 (455)
Q Consensus 280 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~-----------~~~a~~~~~~~~~~~~~--- 344 (455)
......-+...|++++|..+|+...+... -....+..+..... ... ...|..+.+........
T Consensus 417 ~~~~A~~~e~~g~~~dAi~Ly~La~~~d~--vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~ 494 (613)
T PF04097_consen 417 IEQAAREAEERGRFEDAILLYHLAEEYDK--VLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSK 494 (613)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHTT-HHH--HHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhHHH--HHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhh
Confidence 22333456778999999998887665211 12234444443322 222 33355555544332211
Q ss_pred CChHhHHHHH---------HHHhhccchHHHHHHhhhcCCCCC
Q 048235 345 TPPALIKERF---------CNRLENKDYGSAISCLVSHPVSGS 378 (455)
Q Consensus 345 ~~~~~~~~~~---------~~~~~~~~~~~A~~~~~~~~~~~~ 378 (455)
.... ....+ ...++.|++++|++.+++...-|.
T Consensus 495 ~~~~-~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP~ 536 (613)
T PF04097_consen 495 VSRK-NRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIPL 536 (613)
T ss_dssp S-HH-HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-S
T ss_pred ccHH-HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 1111 11111 112388999999999999887663
No 238
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.73 E-value=0.68 Score=35.70 Aligned_cols=79 Identities=14% Similarity=0.085 Sum_probs=51.2
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048235 13 IAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSA 92 (455)
Q Consensus 13 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 92 (455)
-.....+.|++++|.+.|+.+..+- ...+-...+--.++.+|.+.+++++|...+++.++..+.--.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ry-------------P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRY-------------PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcC-------------CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3445566788888888888887530 111234456666778888888888888888888886544333
Q ss_pred hhHHHHHHHHHH
Q 048235 93 TTYGLVMEVMLA 104 (455)
Q Consensus 93 ~~~~~l~~~~~~ 104 (455)
.-|...+.+++.
T Consensus 83 vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 83 VDYAYYMRGLSY 94 (142)
T ss_pred ccHHHHHHHHHH
Confidence 445555555443
No 239
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.71 E-value=2.2 Score=41.34 Aligned_cols=64 Identities=22% Similarity=0.291 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048235 144 EAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219 (455)
Q Consensus 144 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 219 (455)
+.+.-++++.++|-.|+... +...++-.|++.+|-++|.+ .|.. +..+.+|.....++.|.+++
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~ 681 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFL 681 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHh
Confidence 33445567777887777654 45556678888888888754 3322 22344444444445544444
No 240
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.69 E-value=0.74 Score=35.84 Aligned_cols=109 Identities=16% Similarity=0.221 Sum_probs=53.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 048235 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG 210 (455)
Q Consensus 131 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 210 (455)
.++..+...+.......+++.+...+ ..+...++.++..|++.. ..+.+..+.. ..+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 44555555556666666666666554 244555566666665542 2333333331 112222334555566666
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-CChhHHHHHHHH
Q 048235 211 NIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH-GLFEEAMKLFQE 255 (455)
Q Consensus 211 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~ 255 (455)
.++.+..++.++.. +...+..+... ++++.|.+++.+
T Consensus 84 l~~~~~~l~~k~~~--------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 84 LYEEAVELYKKDGN--------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred cHHHHHHHHHhhcC--------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 66666666655532 22223333333 566666655544
No 241
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.66 E-value=1.8 Score=40.41 Aligned_cols=62 Identities=10% Similarity=-0.041 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048235 93 TTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNA---LAYKVLVNTLWREGKTDEAVSAVEDMER 154 (455)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~ 154 (455)
..++.+..+|.+.|++++|...|++.....+.+. .+|..+..+|...|+.++|+..+++..+
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444443333222 2344444455555555555555544444
No 242
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.65 E-value=0.091 Score=44.90 Aligned_cols=88 Identities=19% Similarity=0.295 Sum_probs=63.3
Q ss_pred CCHhhHHHHHHHHHhc-----CChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCC-------
Q 048235 5 PDTVAYRSIAVTLGQA-----GHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQ------- 72 (455)
Q Consensus 5 p~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------- 72 (455)
.|-.+|-..+..+... +.++=....++.|.+ .|+..|..+|+.||..+-+..-
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e---------------yGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE---------------YGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH---------------hcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 3555676677666543 566667777788876 7899999999999988754322
Q ss_pred ---------HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCC
Q 048235 73 ---------WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK 107 (455)
Q Consensus 73 ---------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 107 (455)
-+-+..++++|...|+-||..+-..|++++.+.+-
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 12366778888888888888888888887776665
No 243
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.64 E-value=0.33 Score=36.38 Aligned_cols=89 Identities=15% Similarity=0.104 Sum_probs=52.5
Q ss_pred HHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHh-
Q 048235 16 TLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ-GQKPSAT- 93 (455)
Q Consensus 16 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~- 93 (455)
+++..|+++.|++.|.+... -.+....+||.-..++.-.|+.++|++=+++..+. |.+ +..
T Consensus 52 alaE~g~Ld~AlE~F~qal~----------------l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trta 114 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC----------------LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTA 114 (175)
T ss_pred HHHhccchHHHHHHHHHHHH----------------hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHH
Confidence 45666777777777777663 23556677777777777777777777766666653 222 221
Q ss_pred --hHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 048235 94 --TYGLVMEVMLACGKYNLVYEFFRKVQKS 121 (455)
Q Consensus 94 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 121 (455)
.|..-...|...|+.+.|..=|+...+.
T Consensus 115 cqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 115 CQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 2222223455566666666666655443
No 244
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.61 E-value=1.3 Score=39.45 Aligned_cols=127 Identities=15% Similarity=0.179 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHhcCC--
Q 048235 178 EEALMQMDKICKVANKPLVVSYTGLIQACLD--S----GNIQNAAYIFNQMKNF----CSPNLVTCNIMVKAYLEHGL-- 245 (455)
Q Consensus 178 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~----~~~~~a~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~-- 245 (455)
++.+.+++.|.+.|++-+..+|.+....... . .....|..+|+.|++. ..++-.++..|+.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445666777777777666555543332222 1 2256688888888765 34555566666543 3333
Q ss_pred --hhHHHHHHHHHHhcccccchhhccCCCCCC-c-HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048235 246 --FEEAMKLFQEMAEDSNHINREYDKKGLVIP-D-IYTFNTMLDACAAEKR--WDDLELVYKRMLHHGLHFNAKRHLRM 318 (455)
Q Consensus 246 --~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~-~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~l 318 (455)
.+.+..+|+.+.+.| ... | ......++..+..... ...+.++++.+.+.|+++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~~~------------f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAG------------FKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHhC------------CCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 346678888888877 444 3 3444444444333222 45788999999999998877665443
No 245
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.53 E-value=2 Score=39.62 Aligned_cols=66 Identities=9% Similarity=-0.049 Sum_probs=46.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048235 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHF---NAKRHLRMILDASRAGKVELLEITWEHLAR 340 (455)
Q Consensus 275 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 340 (455)
....+|..+...+.+.|+++.|...+..+...+... .+.........+...|+.++|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356778888888888888888888888887743211 223444445556778888888888887776
No 246
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.50 E-value=1.7 Score=38.77 Aligned_cols=130 Identities=12% Similarity=0.156 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHH--cC----ChhHHHHHHHHHHhcCC----CCHHHHHHHHHHHHhcCC-
Q 048235 73 WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA--CG----KYNLVYEFFRKVQKSYI----PNALAYKVLVNTLWREGK- 141 (455)
Q Consensus 73 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~- 141 (455)
+++...+++.|.+.|..-+..+|.+..-.... .. ....+..+|+.|++..+ ++...+..|+.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 56677899999999999888777764443333 22 24568999999988755 455566666554 3333
Q ss_pred ---hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 048235 142 ---TDEAVSAVEDMERRGIVGSAA--LYYDLARCLCSAGK--CEEALMQMDKICKVANKPLVVSYTGLIQ 204 (455)
Q Consensus 142 ---~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~li~ 204 (455)
.+.+..+|+.+.+.|+..... ..+.++..+..... ...+.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 355677788888877766543 22222222221111 4467788888888888877666665543
No 247
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.40 E-value=1.8 Score=38.37 Aligned_cols=97 Identities=12% Similarity=-0.003 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048235 162 ALYYDLARCLCSAGKCE---EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVK 238 (455)
Q Consensus 162 ~~~~~l~~~~~~~g~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 238 (455)
.++..++.+|...+..+ +|.++++.+...... .+.++..-+..+.+.++.+.+.+++.+|.....-....+...+.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 34556777777666543 455566666554333 24455455666666888888888888887654433444444444
Q ss_pred HH---HhcCChhHHHHHHHHHHhcc
Q 048235 239 AY---LEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 239 ~~---~~~~~~~~a~~~~~~m~~~~ 260 (455)
.+ ... ....|...+..++...
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~r 187 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLNR 187 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHHH
Confidence 44 332 3345556665555544
No 248
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.31 E-value=3.6 Score=41.21 Aligned_cols=176 Identities=13% Similarity=0.073 Sum_probs=102.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048235 11 RSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPD--IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ 88 (455)
Q Consensus 11 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 88 (455)
..-+..+.+...++-|+.+-+.-.. .++ ...+......+.+.|++++|...|-+-... +
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~------------------d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-l 398 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL------------------DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-L 398 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC------------------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-C
Confidence 3456666777777777777665432 222 123444445566789999998887766542 3
Q ss_pred CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHH
Q 048235 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI-VGSAALYYDL 167 (455)
Q Consensus 89 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~l 167 (455)
.| ..++.-|.....+..-..+++.+.+.+..+...-..|+.+|.+.++.+.-.++.+... .|. ..|. ...
T Consensus 399 e~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~---e~a 469 (933)
T KOG2114|consen 399 EP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDV---ETA 469 (933)
T ss_pred Ch-----HHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeH---HHH
Confidence 33 2334445555666666777888888877788888889999999888887776665544 222 1122 223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048235 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222 (455)
Q Consensus 168 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 222 (455)
+..+.+.+-.++|..+-.+... +......++ -..+++++|.+.+..+
T Consensus 470 l~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 470 LEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 4444455555555443332221 222223222 2445566666666554
No 249
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.29 E-value=0.9 Score=34.27 Aligned_cols=85 Identities=18% Similarity=0.274 Sum_probs=50.8
Q ss_pred HcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048235 104 ACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183 (455)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 183 (455)
.+|++......+-.+. .+...+...++.+...|.-+.-.+++.++.+. -.+++.....+..+|.+.|+..++-++
T Consensus 68 ~C~NlKrVi~C~~~~n----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~el 142 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRN----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANEL 142 (161)
T ss_dssp G-S-THHHHHHHHHTT-------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred hhcchHHHHHHHHHhc----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHH
Confidence 3455555554443332 24455666677777888888888888877653 356666677788888888888888888
Q ss_pred HHHHHHcCCC
Q 048235 184 MDKICKVANK 193 (455)
Q Consensus 184 ~~~m~~~~~~ 193 (455)
+.+..+.|++
T Consensus 143 l~~ACekG~k 152 (161)
T PF09205_consen 143 LKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-H
T ss_pred HHHHHHhchH
Confidence 8888887754
No 250
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.29 E-value=0.9 Score=34.26 Aligned_cols=64 Identities=11% Similarity=0.157 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048235 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308 (455)
Q Consensus 232 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 308 (455)
.....+......|+-+.-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-------------~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-------------EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-------------cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444455555666666666666665542 245555555666666666666666666666666554
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.57 Score=41.32 Aligned_cols=153 Identities=12% Similarity=0.016 Sum_probs=108.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHH----HHHHHHHhcCChH
Q 048235 68 VRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYK----VLVNTLWREGKTD 143 (455)
Q Consensus 68 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~ 143 (455)
-..|++.+|-..++++.+. .+.|...+...=.+|.-.|+.+.....++++.....++...|. .+..++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3578888888888888876 3447777777778889999999999999988876555554443 3345566789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 048235 144 EAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL---VVSYTGLIQACLDSGNIQNAAYIFN 220 (455)
Q Consensus 144 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~ 220 (455)
+|.+.-++..+.+ +.|...-.++...+-..|++.++.+++.+-...--..+ .+-|=...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999988888775 45666667777777888999999888776433211111 2222223334556689999999997
Q ss_pred HH
Q 048235 221 QM 222 (455)
Q Consensus 221 ~~ 222 (455)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 54
No 252
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.24 E-value=1.6 Score=36.84 Aligned_cols=188 Identities=20% Similarity=0.123 Sum_probs=101.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCChHHHH
Q 048235 70 RKQWEGAFWVLQQLKQQGQKP-SATTYGLVMEVMLACGKYNLVYEFFRKVQK--SYIPNALAYKVLVNTLWREGKTDEAV 146 (455)
Q Consensus 70 ~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~ 146 (455)
.+....+...+.......... ....+......+...+.+..+...+..... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 344555555555555443221 245555566666677777777776666654 23345556666666666667777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048235 147 SAVEDMERRGIVGSAALYYDLAR-CLCSAGKCEEALMQMDKICKVAN--KPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223 (455)
Q Consensus 147 ~~~~~m~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 223 (455)
..+.........+.. ....... .+...|+++.+...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDPDL-AEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCcch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 777776664433311 1111222 55666777777777666644221 0122333333333445556666666666555
Q ss_pred hcCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048235 224 NFCSP-NLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258 (455)
Q Consensus 224 ~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 258 (455)
...+. ....+..+...+...++++.|...+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 54333 345555555555555556666666655555
No 253
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.15 E-value=1.7 Score=36.69 Aligned_cols=192 Identities=19% Similarity=0.167 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh------hHHHHHHHHHHcCChhHHHHHHHHHHh----cCCCCHH
Q 048235 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSAT------TYGLVMEVMLACGKYNLVYEFFRKVQK----SYIPNAL 127 (455)
Q Consensus 58 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~ 127 (455)
..|.....+|....+++.|...+.+..+ +...|.. .|...+-..-....+.++..++++... .|.|+..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 4455555566666666666665555442 1121222 222222223334445555555555432 2223322
Q ss_pred HHHHHH--HHHHhcCChHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCc-
Q 048235 128 AYKVLV--NTLWREGKTDEAVSAVEDMERR---G--IVGSAALYYDLARCLCSAGKCEEALMQMDKICKV----ANKPL- 195 (455)
Q Consensus 128 ~~~~li--~~~~~~g~~~~a~~~~~~m~~~---~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~- 195 (455)
+- +|- .-..+..+++.|+++|++.... + ...-...+....+.+.+..++++|-..+.+-... .--++
T Consensus 111 Am-aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~ 189 (308)
T KOG1585|consen 111 AM-ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ 189 (308)
T ss_pred HH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH
Confidence 21 111 1123456677777777765432 1 1111234455666677777777776655443211 11122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---c-CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 048235 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKN---F-CSPNLVTCNIMVKAYLEHGLFEEAMKL 252 (455)
Q Consensus 196 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~-~~~~~~~~~~li~~~~~~~~~~~a~~~ 252 (455)
-..|-..|-.|....++..|...++.-.+ . .+.+..+...|+.+|- .|+.+++.++
T Consensus 190 ~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 190 CKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHH
Confidence 23355666667777899999999988433 2 3456777888888775 4666655443
No 254
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.12 E-value=5 Score=41.90 Aligned_cols=126 Identities=17% Similarity=0.213 Sum_probs=58.9
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCH
Q 048235 14 AVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRR-KQWEGAFWVLQQLKQQGQKPSA 92 (455)
Q Consensus 14 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~ 92 (455)
+.-++..+++.+|.++.++-+-. |+--...++..|-.-+.++.+. ++.+-...++..+...++. .
T Consensus 684 vr~~l~~~~y~~AF~~~RkhRid------------lnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvt--k 749 (1265)
T KOG1920|consen 684 VRTLLDRLRYKEAFEVMRKHRID------------LNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVT--K 749 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC------------ccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhh--h
Confidence 44566667777777666654421 1112223344444444455544 4445444455555433221 1
Q ss_pred hhHHHHH----HHHHHc----CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHH
Q 048235 93 TTYGLVM----EVMLAC----GKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREG--KTDEAVSAVEDMER 154 (455)
Q Consensus 93 ~~~~~l~----~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~ 154 (455)
..|.... ..|... ...+...+..+....+..|+ .....+|.+|.+.+ .++.|+....+...
T Consensus 750 ~~y~~~~~s~k~~~~~r~~~d~kv~~vc~~vr~~l~~~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 750 TMYSSTSGSGKQVYMSRDPYDNKVNSVCDAVRNALERRAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhccccccccceeEEeccchhhHHHHHHHHHHHHHhhcCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 1111110 011111 11223333333333444455 45556778888877 66777776666654
No 255
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=1.8 Score=36.63 Aligned_cols=209 Identities=11% Similarity=0.145 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048235 94 TYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173 (455)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 173 (455)
.|.....+|....++++|...+.+..+....+...|.+ ...++.|..+.+++.+.. --...|.--...|..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA-------AKayEqaamLake~~kls--Evvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA-------AKAYEQAAMLAKELSKLS--EVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH-------HHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHH
Confidence 34444556777788888888777776543333332221 122444555555554331 112334445556666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHhcCChh
Q 048235 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF------CSPNLVTCNIMVKAYLEHGLFE 247 (455)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~ 247 (455)
.|.++.|-..+++.-+. ...-++++|++++++.... ...-...+...-+.+.+...++
T Consensus 104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 67666666666554321 1122334444444433221 0111223344455666677777
Q ss_pred HHHHHHHHHHhcccccchhhccCCCCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C--CCCHHHHHHHHHHHH
Q 048235 248 EAMKLFQEMAEDSNHINREYDKKGLVIPDI-YTFNTMLDACAAEKRWDDLELVYKRMLHHG-L--HFNAKRHLRMILDAS 323 (455)
Q Consensus 248 ~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~--~p~~~~~~~ll~~~~ 323 (455)
+|-..+.+-...... ...-++. ..|-..|-.|....++..|.+.++.--+.+ + .-+..+...|+.+|
T Consensus 168 Eaa~a~lKe~~~~~~--------~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay- 238 (308)
T KOG1585|consen 168 EAATAFLKEGVAADK--------CDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY- 238 (308)
T ss_pred HHHHHHHHhhhHHHH--------HhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-
Confidence 765555443221100 0011222 335555556666778888888887754422 1 22345666677666
Q ss_pred hcCChHHHHHHHH
Q 048235 324 RAGKVELLEITWE 336 (455)
Q Consensus 324 ~~g~~~~a~~~~~ 336 (455)
..|+.+++.+++.
T Consensus 239 d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 239 DEGDIEEIKKVLS 251 (308)
T ss_pred ccCCHHHHHHHHc
Confidence 4667776665543
No 256
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.09 E-value=0.52 Score=40.51 Aligned_cols=100 Identities=13% Similarity=0.067 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHc-----------
Q 048235 227 SPNLVTCNIMVKAYLEH-----GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE----------- 290 (455)
Q Consensus 227 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----------- 290 (455)
..|..+|...+..|... +.++-....++.|.+.| +..|..+|+.|++.+-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyG------------VerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYG------------VERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhc------------chhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 35666677777666543 45566666778888888 788888888888876432
Q ss_pred -----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHH
Q 048235 291 -----KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-ELLEITWEHL 338 (455)
Q Consensus 291 -----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~ 338 (455)
.+-+-++.++++|...|+.||..+-..++.++.+.+-. .+..++.-.|
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 23355889999999999999999999999999887763 3334443334
No 257
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.07 E-value=1.3 Score=34.91 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=9.0
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 048235 287 CAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 287 ~~~~~~~~~a~~~~~~m~~ 305 (455)
+...|+|.+|..+|+++..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3444445555555544443
No 258
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.04 E-value=0.69 Score=34.77 Aligned_cols=92 Identities=13% Similarity=0.133 Sum_probs=67.9
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCH
Q 048235 101 VMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA---ALYYDLARCLCSAGKC 177 (455)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~g~~ 177 (455)
+.+..|+++.|++.|.+.....+....+||.-..++.-.|+.++|++=+++..+..-.-+. ..|..-...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 4567889999999998888877778888999999998899999998888887775222222 2333344456667888
Q ss_pred HHHHHHHHHHHHcCC
Q 048235 178 EEALMQMDKICKVAN 192 (455)
Q Consensus 178 ~~a~~~~~~m~~~~~ 192 (455)
+.|..=|+..-+.|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888877766663
No 259
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.01 E-value=2 Score=36.70 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=36.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048235 167 LARCLCSAGKCEEALMQMDKICKVANKPL---VVSYTGLIQACLDSGNIQNAAYIFNQMKN 224 (455)
Q Consensus 167 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 224 (455)
+.+.|.+.|.+-.|..-+++|.+.- +-+ ....-.+..+|...|-.++|...-.-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y-~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENY-PDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 5566777777777777777777762 222 23344556677777777777666655544
No 260
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.99 E-value=1.9 Score=36.38 Aligned_cols=222 Identities=18% Similarity=0.143 Sum_probs=139.3
Q ss_pred CChhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048235 106 GKYNLVYEFFRKVQKSYIP--NALAYKVLVNTLWREGKTDEAVSAVEDMERR-GIVGSAALYYDLARCLCSAGKCEEALM 182 (455)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~ 182 (455)
+....+...+......... ....+......+...+++..+...+...... ........+......+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445555555555444332 3567777778888888888888888777653 233445556666677777778888888
Q ss_pred HHHHHHHcCCCCcHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048235 183 QMDKICKVANKPLVVSYTGLIQ-ACLDSGNIQNAAYIFNQMKNFCSP----NLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257 (455)
Q Consensus 183 ~~~~m~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 257 (455)
.+.........+ ......... .+...|+++.|...+.+... ..| ....+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 888777654433 122222222 67788888888888888754 332 23334444444566778888888888877
Q ss_pred hcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 048235 258 EDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN-AKRHLRMILDASRAGKVELLEITW 335 (455)
Q Consensus 258 ~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 335 (455)
... .. ....+..+...+...++++.+...+....... |+ ...+..+...+...+..+.+...+
T Consensus 195 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (291)
T COG0457 195 KLN-------------PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEAL 259 (291)
T ss_pred hhC-------------cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHH
Confidence 753 22 35666777777777777888888887777732 32 233333344444566677777777
Q ss_pred HHHhhcCCC
Q 048235 336 EHLARADRI 344 (455)
Q Consensus 336 ~~~~~~~~~ 344 (455)
.......+.
T Consensus 260 ~~~~~~~~~ 268 (291)
T COG0457 260 EKALELDPD 268 (291)
T ss_pred HHHHHhCcc
Confidence 776655543
No 261
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.78 E-value=2.2 Score=40.12 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCCCh-HhHHHHHHHHhhccchHHHHHHhhhc
Q 048235 316 LRMILDASRAGKVELLEITWEHLARADRITPP-ALIKERFCNRLENKDYGSAISCLVSH 373 (455)
Q Consensus 316 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~ 373 (455)
..+..++.+.|+.++|.+.+++|.+..+.... .+...++..+++.+.+.++..++.+-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 33444455566666666666666554433222 22333334444666666666666554
No 262
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.78 E-value=1.8 Score=38.82 Aligned_cols=167 Identities=10% Similarity=0.025 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCC
Q 048235 198 SYTGLIQACLDSGNIQNAAYIFNQMKNF--CSP---NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGL 272 (455)
Q Consensus 198 ~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 272 (455)
.|..+.+++-+.-++.+++.+-..-... ..| .-....++..++...+.++++++.|+....--.. .+.
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~-------~~D 157 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHN-------NDD 157 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhc-------cCC
Confidence 3444555555555555555544433221 111 1123344666677777778888777776553200 000
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 048235 273 VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH----HGLHFNA-----KRHLRMILDASRAGKVELLEITWEHLARADR 343 (455)
Q Consensus 273 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 343 (455)
.......+-.|...|.+..++++|.-+..+..+ .++.--. .....+..++...|.+-.|.+..++..+...
T Consensus 158 ~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal 237 (518)
T KOG1941|consen 158 AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL 237 (518)
T ss_pred ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 111235667777788888888887766665543 2221111 1233345566777877777777777655444
Q ss_pred CCChHh-HHHHHHH---Hh-hccchHHHHHHhh
Q 048235 344 ITPPAL-IKERFCN---RL-ENKDYGSAISCLV 371 (455)
Q Consensus 344 ~~~~~~-~~~~~~~---~~-~~~~~~~A~~~~~ 371 (455)
...+.- ....++. +. ..|+.+.|+.=++
T Consensus 238 ~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 238 QHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 443321 1222222 12 5677666665444
No 263
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.77 E-value=2.3 Score=36.30 Aligned_cols=180 Identities=14% Similarity=0.114 Sum_probs=90.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-----
Q 048235 136 LWREGKTDEAVSAVEDMERRGI--VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD----- 208 (455)
Q Consensus 136 ~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----- 208 (455)
-.+.|++++|.+.|+.+..+.. +-...+...++.++.+.+++++|...+++..+..+.....-|..-|.+++.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 3455677777777776665421 112334444566666677777777777666655433223333333444332
Q ss_pred --cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHH-HHHHH
Q 048235 209 --SGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF-NTMLD 285 (455)
Q Consensus 209 --~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~-~~li~ 285 (455)
..+...+.+.|..+.+ +|.-|=.+.=...|..-...+... ..-+ ..+.+
T Consensus 124 ~~~rDq~~~~~A~~~f~~-----------~i~ryPnS~Ya~dA~~~i~~~~d~-----------------LA~~Em~Iar 175 (254)
T COG4105 124 DVTRDQSAARAAFAAFKE-----------LVQRYPNSRYAPDAKARIVKLNDA-----------------LAGHEMAIAR 175 (254)
T ss_pred ccccCHHHHHHHHHHHHH-----------HHHHCCCCcchhhHHHHHHHHHHH-----------------HHHHHHHHHH
Confidence 1233334444443332 111111111112222211111110 0001 23456
Q ss_pred HHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 048235 286 ACAAEKRWDDLELVYKRMLHH--GLHFNAKRHLRMILDASRAGKVELLEITWEHLARADR 343 (455)
Q Consensus 286 ~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 343 (455)
.|.+.|.+..|..-+++|++. ...-....+..+..+|...|..++|.+.-.-+....+
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 788888888888888888874 1111223556667778788888887777666654443
No 264
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.71 E-value=0.18 Score=41.48 Aligned_cols=155 Identities=18% Similarity=0.123 Sum_probs=91.6
Q ss_pred CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHH
Q 048235 273 VIPD-IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIK 351 (455)
Q Consensus 273 ~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 351 (455)
+.|+ +..||-|.--+...|+++.|.+.|+...+.+..-+-...|.-| ++--.|+++-|.+-+...-+.++..|-.
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR--- 169 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFR--- 169 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHH---
Confidence 5575 5678888888889999999999999999844322222222222 2345799999999999998888888753
Q ss_pred HHHHHHh--hccchHHHHHHhh-hcCCCCCccccHHHHHHHHhh-hcccCCcchHHHHHHHhcccccccc-------CCC
Q 048235 352 ERFCNRL--ENKDYGSAISCLV-SHPVSGSPEFSRNAWLKFFKE-NSQHFGQDTLIQLLHEASSSLTTRN-------GSP 420 (455)
Q Consensus 352 ~~~~~~~--~~~~~~~A~~~~~-~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~ 420 (455)
.++..+ +.-+..+|..-+. ...... ..-|+..+-. +..+...+...+. +.+...+| .++
T Consensus 170 -~LWLYl~E~k~dP~~A~tnL~qR~~~~d-----~e~WG~~iV~~yLgkiS~e~l~~~----~~a~a~~n~~~Ae~LTEt 239 (297)
T COG4785 170 -SLWLYLNEQKLDPKQAKTNLKQRAEKSD-----KEQWGWNIVEFYLGKISEETLMER----LKADATDNTSLAEHLTET 239 (297)
T ss_pred -HHHHHHHHhhCCHHHHHHHHHHHHHhcc-----HhhhhHHHHHHHHhhccHHHHHHH----HHhhccchHHHHHHHHHH
Confidence 222222 3445666665333 332211 2456553332 2222222222222 22122222 456
Q ss_pred chhHHHHHHhHHhhhhccCCc
Q 048235 421 YPVLQNLISSCKDFLRTQSPA 441 (455)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~ 441 (455)
|+.||..|-..|+.+.|..+.
T Consensus 240 yFYL~K~~l~~G~~~~A~~Lf 260 (297)
T COG4785 240 YFYLGKYYLSLGDLDEATALF 260 (297)
T ss_pred HHHHHHHHhccccHHHHHHHH
Confidence 778888888888887776653
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.70 E-value=1.6 Score=38.65 Aligned_cols=114 Identities=14% Similarity=0.098 Sum_probs=47.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH----HHHHHHHHhcCChhHH
Q 048235 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTC----NIMVKAYLEHGLFEEA 249 (455)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~li~~~~~~~~~~~a 249 (455)
.|+..+|-..++++.+.- +.|...+...=++|...|+...-...++++...-.++...| .....++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 344444444444444432 22444444444444444544444444444433222222222 2222233344555555
Q ss_pred HHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048235 250 MKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301 (455)
Q Consensus 250 ~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 301 (455)
.+.-++..+.+ +.|.-.-.++...+...|++.++.++..
T Consensus 195 Ek~A~ralqiN-------------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 195 EKQADRALQIN-------------RFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHHhhccCC-------------CcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 55544444432 1233444444444444445555444443
No 266
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.64 E-value=0.49 Score=41.24 Aligned_cols=54 Identities=22% Similarity=0.409 Sum_probs=27.5
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048235 100 EVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDME 153 (455)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 153 (455)
..+..+|+++.+...++++....+-+...|..+|.+|.+.|+...|+..|+++.
T Consensus 161 e~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 161 EALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344445555555555555555444455555555555555555555555555443
No 267
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.62 E-value=0.14 Score=30.51 Aligned_cols=22 Identities=9% Similarity=0.087 Sum_probs=8.5
Q ss_pred HHHHHcCChhHHHHHHHHHHhc
Q 048235 100 EVMLACGKYNLVYEFFRKVQKS 121 (455)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~ 121 (455)
.+|.+.|++++|+++|+++.+.
T Consensus 9 ~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 9 RAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 268
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.55 E-value=1.3 Score=44.09 Aligned_cols=118 Identities=8% Similarity=0.116 Sum_probs=67.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHH----HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048235 95 YGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLV----NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170 (455)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 170 (455)
...-+..+.+..-++.|..+-..-. .+..+...+. +.+.+.|++++|...|-+-... +.| ..+|.-
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 3444556666666666666543321 2333333333 3444678888887766544322 122 124555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048235 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223 (455)
Q Consensus 171 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 223 (455)
|....+...-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+...
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 55666666666777777777765 44455667777777777776666655543
No 269
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.44 E-value=1.8 Score=33.63 Aligned_cols=86 Identities=10% Similarity=0.125 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048235 10 YRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK 89 (455)
Q Consensus 10 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 89 (455)
...++..+.+.+....+...++.+.. .+ ..+...+|.++..|++.+. ....+.+.. .
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~---------------~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~ 66 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALK---------------LN-SENPALQTKLIELYAKYDP-QKEIERLDN------K 66 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHc---------------cC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------c
Confidence 34455555555566666666666553 22 2445556666666654422 222222221 1
Q ss_pred CCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 048235 90 PSATTYGLVMEVMLACGKYNLVYEFFRKV 118 (455)
Q Consensus 90 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 118 (455)
.+......+++.|.+.+-++.+.-++.++
T Consensus 67 ~~~yd~~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 67 SNHYDIEKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred cccCCHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 13333344445555555555555444443
No 270
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.44 E-value=2.1 Score=34.26 Aligned_cols=99 Identities=12% Similarity=0.149 Sum_probs=48.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 048235 147 SAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG--NIQNAAYIFNQMKN 224 (455)
Q Consensus 147 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~ 224 (455)
+.++.+.+.+++|+...+..++..+.+.|++... ..+.+.++-+|.......+-.+.... -..-|...+.++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh
Confidence 3444455566666666666666666666665443 33334444444443333332222211 02223333333321
Q ss_pred cCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 048235 225 FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256 (455)
Q Consensus 225 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 256 (455)
.+..++..+...|++-+|.++.+..
T Consensus 91 -------~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 91 -------AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred -------hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 3444555666666666666666554
No 271
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.44 E-value=0.75 Score=37.49 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD--IYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 232 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
.+..+...|++.|+.+.|++.|.++.+.. ..+. ...+..+|+.....+++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~------------~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYC------------TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhc------------CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45566667777777777777777766654 3332 34556666666667777777666666654
No 272
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=3.2 Score=36.29 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=23.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 048235 207 LDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256 (455)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 256 (455)
...|++..|...|.......+-+...-..+..+|...|+.+.|..++..+
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34444445555444444433333344444444555555555555554443
No 273
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.26 E-value=0.23 Score=29.52 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 048235 199 YTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNI 235 (455)
Q Consensus 199 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 235 (455)
+..+...|...|++++|.++|+++.+..|.|...|..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 3444555555555555555555555444444444443
No 274
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.25 E-value=8.3 Score=40.44 Aligned_cols=133 Identities=12% Similarity=0.120 Sum_probs=77.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHH
Q 048235 203 IQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY----LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY 278 (455)
Q Consensus 203 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~ 278 (455)
++.--+.|-+.+|+.++ .|+...+.....+| .....+++|.-.|+..-+.
T Consensus 915 ~n~I~kh~Ly~~aL~ly-------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl------------------- 968 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALY-------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL------------------- 968 (1265)
T ss_pred HHHHHhcccchhhhhee-------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-------------------
Confidence 33334445555555444 36655555444444 4456777777666654332
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHH
Q 048235 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA--KRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCN 356 (455)
Q Consensus 279 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (455)
...+.+|..+|+|.+|..+..++.... +. .+-..|+..+...++.-+|-++..+-... + .+.+..
T Consensus 969 --ekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd----~----~~av~l 1035 (1265)
T KOG1920|consen 969 --EKALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRLVEQRKHYEAAKILLEYLSD----P----EEAVAL 1035 (1265)
T ss_pred --HHHHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC----H----HHHHHH
Confidence 245667778888888887777655411 11 12245666677778877777776665432 2 245555
Q ss_pred HhhccchHHHHHHhhhcC
Q 048235 357 RLENKDYGSAISCLVSHP 374 (455)
Q Consensus 357 ~~~~~~~~~A~~~~~~~~ 374 (455)
+++...+++|+.+.....
T Consensus 1036 l~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1036 LCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HhhHhHHHHHHHHHHhcc
Confidence 556677777777666554
No 275
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.03 E-value=2.2 Score=32.97 Aligned_cols=72 Identities=19% Similarity=0.210 Sum_probs=46.0
Q ss_pred HHHcCChhHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048235 102 MLACGKYNLVYEFFRKVQKSYI---PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173 (455)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 173 (455)
..+.|+++.|.+.|+.+..+.+ -...+--.++.+|.+.+++++|...+++.++........-|...+.+++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 4467777777777777777655 24455566777777788888888888777776533323334444444443
No 276
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.87 E-value=1.1 Score=36.42 Aligned_cols=101 Identities=12% Similarity=0.004 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHH---
Q 048235 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA--KRHLRMILDASRAGKVELLEITWEHLARADRITPPALIK--- 351 (455)
Q Consensus 277 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--- 351 (455)
...+..+...|++.|+.+.|.+.|.++.+....+.. ..+..+|......|++..+...+.+....-....+....
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 357888999999999999999999999997665554 356778888899999999998888775443333322222
Q ss_pred HHHHHH--hhccchHHHHHHhhhcCCCC
Q 048235 352 ERFCNR--LENKDYGSAISCLVSHPVSG 377 (455)
Q Consensus 352 ~~~~~~--~~~~~~~~A~~~~~~~~~~~ 377 (455)
..+..+ +..+++.+|.+.+-+.+...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 222222 47889999998887765433
No 277
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=4.2 Score=35.54 Aligned_cols=145 Identities=11% Similarity=0.050 Sum_probs=81.0
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048235 102 MLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181 (455)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 181 (455)
....|++..|..+|.......+.+...--.+..+|...|+.+.|..++..+....-.........-+..+.+.....+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 45677777788888777776666666777777888888888888888777654321111122122223333333332222
Q ss_pred HHHHHHHHcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhcCChhHH
Q 048235 182 MQMDKICKVANKP-LVVSYTGLIQACLDSGNIQNAAYIFNQMKNF--CSPNLVTCNIMVKAYLEHGLFEEA 249 (455)
Q Consensus 182 ~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a 249 (455)
.+-.+.-. .| |...-..+...+...|+.+.|.+.+-.+... .-.|...-..|+..+.-.|..+.+
T Consensus 224 ~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 224 DLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 22222222 23 5555566777777777777777666555332 333444555566665555544433
No 278
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.80 E-value=0.49 Score=33.35 Aligned_cols=62 Identities=8% Similarity=0.046 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048235 73 WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVN 134 (455)
Q Consensus 73 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 134 (455)
.=++.+-++.+....+.|+.....+.+++|.+.+++..|.++|+.++.....+...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 34667778888888899999999999999999999999999999888655445556666554
No 279
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.72 E-value=6.3 Score=37.22 Aligned_cols=187 Identities=14% Similarity=0.085 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048235 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSAT-TYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLW 137 (455)
Q Consensus 59 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 137 (455)
....|-.+. +..+.+.-.+.-.+..+. .|+.. .|..|. --.+..+.++++++++..+.+.. .+ .
T Consensus 171 Aq~IMq~AW-RERnp~aRIkaA~eALei--~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~---~l-------g 235 (539)
T PF04184_consen 171 AQEIMQKAW-RERNPQARIKAAKEALEI--NPDCADAYILLA--EEEASTIVEAEELLRQAVKAGEA---SL-------G 235 (539)
T ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHh--hhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHHH---hh-------c
Confidence 333333333 455555555555555443 34432 232221 12345577888888876653220 00 0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCCHHHHH
Q 048235 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP-LVVSYTGLIQACLDSGNIQNAA 216 (455)
Q Consensus 138 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~ 216 (455)
+....+..-..++....++..+-..+-..+..++.+.|+.++|.+.+++|.+..... ...+...|+.++...+.+.++.
T Consensus 236 ~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 236 KSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred hhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence 000000000111222223333333333457777778888888888888887654322 3456677888888888888888
Q ss_pred HHHHHHHhcCCCC--HHHHHHHHHHHHhcCC---------------hhHHHHHHHHHHhcc
Q 048235 217 YIFNQMKNFCSPN--LVTCNIMVKAYLEHGL---------------FEEAMKLFQEMAEDS 260 (455)
Q Consensus 217 ~~~~~~~~~~~~~--~~~~~~li~~~~~~~~---------------~~~a~~~~~~m~~~~ 260 (455)
.++.+-.+..-|. ..+|+..+--+-..++ -..|.+.++++.+.+
T Consensus 316 ~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefN 376 (539)
T PF04184_consen 316 ALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFN 376 (539)
T ss_pred HHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhC
Confidence 8888875432233 3456654433222222 123567777777766
No 280
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.43 E-value=6.6 Score=36.55 Aligned_cols=339 Identities=14% Similarity=0.119 Sum_probs=172.6
Q ss_pred HhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHh
Q 048235 18 GQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG----QKPSAT 93 (455)
Q Consensus 18 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~ 93 (455)
-+.++++.|++.+......-... ++.-++.--...-+|-..=+..+.++...|++.++..+++++...= ..-+..
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~-~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGT-ESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhccc-ccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 35678888888877665421000 0000000000011233444667788899999999999999887653 347889
Q ss_pred hHHHHHHHHHHcC--------C-------hhHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHhc--CChHHHHHHH
Q 048235 94 TYGLVMEVMLACG--------K-------YNLVYEFFRKVQK-------SYIPNALAYKVLVNTLWRE--GKTDEAVSAV 149 (455)
Q Consensus 94 ~~~~l~~~~~~~~--------~-------~~~a~~~~~~~~~-------~~~~~~~~~~~li~~~~~~--g~~~~a~~~~ 149 (455)
+|+.++-++++.- . ++.+.-...+|.. ...|-......++....-. .+..--++++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 9998665554321 1 1222222222221 1113333333333333221 1222233344
Q ss_pred HHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048235 150 EDMERRGIVGSAAL-YYDLARCLCSAGKCEEALMQMDKICKVANKP----LVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224 (455)
Q Consensus 150 ~~m~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 224 (455)
......-+.|+... ...+...+.+ +.+++..+-+.+....+.+ =..+|..++....+.++...|.+.+.-+..
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 43333444454221 1222222222 3444433333332221110 134555666666666666666665554432
Q ss_pred cCCC--------------------CHHHHH------------------------HHH---HHHHhcCC-hhHHHHHHHHH
Q 048235 225 FCSP--------------------NLVTCN------------------------IMV---KAYLEHGL-FEEAMKLFQEM 256 (455)
Q Consensus 225 ~~~~--------------------~~~~~~------------------------~li---~~~~~~~~-~~~a~~~~~~m 256 (455)
..|. |...++ -|+ .-+-+.|. -++|+.+++.+
T Consensus 327 ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 327 LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 1000 111111 111 11223344 66788888887
Q ss_pred HhcccccchhhccCCCCCC-cHHHHHHHH----HHHHHc---CCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHH--H
Q 048235 257 AEDSNHINREYDKKGLVIP-DIYTFNTML----DACAAE---KRWDDLELVYKRMLHHGLHFNA----KRHLRMILD--A 322 (455)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~p-~~~~~~~li----~~~~~~---~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~--~ 322 (455)
++- .| |..+-|.+. .+|... ..+.+-.++-+-+.+.|+.|-. ..-+.+.++ +
T Consensus 407 l~f--------------t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyL 472 (549)
T PF07079_consen 407 LQF--------------TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYL 472 (549)
T ss_pred HHh--------------ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHH
Confidence 773 34 544444332 234332 3344555555555567887643 356667777 3
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCC
Q 048235 323 SRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPV 375 (455)
Q Consensus 323 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 375 (455)
...|++.++.-.-..+.+-.| ......-+..+++...++.+|+.++.+.|.
T Consensus 473 ysqgey~kc~~ys~WL~~iaP--S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTKIAP--SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HhcccHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 788999999988888877665 223344444555699999999999999986
No 281
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.28 E-value=7.6 Score=36.78 Aligned_cols=166 Identities=9% Similarity=0.009 Sum_probs=102.4
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCC
Q 048235 193 KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGL 272 (455)
Q Consensus 193 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 272 (455)
..|.....+++..++..-.+.-.+.+..+|.. ...+-..|-.++.+|..+ ..+.-..+|+++.+..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~-~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d------------ 128 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLE-YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD------------ 128 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc------------
Confidence 34556666778888877777777777777765 345666777888888887 5567788888887754
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 048235 273 VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA------KRHLRMILDASRAGKVELLEITWEHLARADRITP 346 (455)
Q Consensus 273 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 346 (455)
.|......-+..+...++.+.+..+|.++...=+ |-. ..|..+.. .-..+.+....+...+....+...
T Consensus 129 --fnDvv~~ReLa~~yEkik~sk~a~~f~Ka~yrfI-~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~ 203 (711)
T COG1747 129 --FNDVVIGRELADKYEKIKKSKAAEFFGKALYRFI-PRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGR 203 (711)
T ss_pred --chhHHHHHHHHHHHHHhchhhHHHHHHHHHHHhc-chhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccch
Confidence 4444444434333444777888888888776422 211 12222221 114566777777777765554444
Q ss_pred hHhH-HHHHHHHhhccchHHHHHHhhhcCCCC
Q 048235 347 PALI-KERFCNRLENKDYGSAISCLVSHPVSG 377 (455)
Q Consensus 347 ~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~ 377 (455)
..+. ..++..+-...++.+|+++++....-.
T Consensus 204 ~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 204 GSVLMQDVYKKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHhhhc
Confidence 3333 333344447788888888888766433
No 282
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.27 E-value=1.4 Score=38.45 Aligned_cols=84 Identities=12% Similarity=0.131 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC
Q 048235 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275 (455)
Q Consensus 196 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p 275 (455)
..++..++..+...|+++.+...++++....+-+...|..++.+|.+.|+...|+..|+.+.+.- ....++.|
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~-------~edlgi~P 225 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL-------AEELGIDP 225 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh-------hhhcCCCc
Confidence 45677889999999999999999999998889999999999999999999999999999887631 22334788
Q ss_pred cHHHHHHHHHH
Q 048235 276 DIYTFNTMLDA 286 (455)
Q Consensus 276 ~~~~~~~li~~ 286 (455)
...+.......
T Consensus 226 ~~~~~~~y~~~ 236 (280)
T COG3629 226 APELRALYEEI 236 (280)
T ss_pred cHHHHHHHHHH
Confidence 87777766555
No 283
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.20 E-value=5.3 Score=35.98 Aligned_cols=228 Identities=12% Similarity=0.071 Sum_probs=134.2
Q ss_pred HHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH-HHHHH-cCCCCC---
Q 048235 17 LGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVL-QQLKQ-QGQKPS--- 91 (455)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~-~~m~~-~~~~p~--- 91 (455)
+....+.++|+..+.+..... ....-...++-.+..+.++.|.+++++..- .+|.- ....-.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l-------------~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~ 82 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKL-------------SDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFL 82 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHH-------------HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888887766420 011122356677778888888888776532 11111 011111
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCCH
Q 048235 92 ATTYGLVMEVMLACGKYNLVYEFFRKVQKSY-----IPNALAYKVLVNTLWREGKTDEAVSAVEDMERR-----GIVGSA 161 (455)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~ 161 (455)
-..|..+.+++-+.-++.+++.+-..-.... .......-++..++...+.++++++.|+...+- +.....
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 2334444455555555555555544332211 111233345667777788899999999887653 112234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCcHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhc--CCCC-
Q 048235 162 ALYYDLARCLCSAGKCEEALMQMDKICK----VANKPLVVSYT-----GLIQACLDSGNIQNAAYIFNQMKNF--CSPN- 229 (455)
Q Consensus 162 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~--~~~~- 229 (455)
..|..|...|....++++|.-+..+..+ .++.--..-|. .+.-++...|+.-+|.+.-++..+. ..-|
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 5688899999999999999877666433 23331112222 2334566778888888888776442 2233
Q ss_pred ---HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048235 230 ---LVTCNIMVKAYLEHGLFEEAMKLFQEMA 257 (455)
Q Consensus 230 ---~~~~~~li~~~~~~~~~~~a~~~~~~m~ 257 (455)
......+...|-..|+.+.|+.-|+...
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 3344567778888999999988777654
No 284
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.19 E-value=5 Score=34.49 Aligned_cols=299 Identities=12% Similarity=0.133 Sum_probs=177.2
Q ss_pred CCCCCCHhHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCHhhHH---HHHHHHHHcCChhHHHHHHHHHHhcC----
Q 048235 51 PRLEPDIVVYNAVLNAC-VRRKQWEGAFWVLQQLKQQGQKPSATTYG---LVMEVMLACGKYNLVYEFFRKVQKSY---- 122 (455)
Q Consensus 51 ~~~~~~~~~~~~li~~~-~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~---- 122 (455)
.+..||+..-|..-.+- .+..++++|+.-|.+..+....-...-|. .++....+.+++++....+.++..-.
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 56688888766654432 23457999999999998865444455544 45778899999999999888875321
Q ss_pred --CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---
Q 048235 123 --IPNALAYKVLVNTLWREGKTDEAVSAVEDMER-----RGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVAN--- 192 (455)
Q Consensus 123 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--- 192 (455)
.-+.-..|++++.-....+.+.-..+++.-.+ .+-+.+-.|-..|...|...+.+.+...++.++.+.--
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 13455677777766666666665555554332 12233333445577788888888888888887754311
Q ss_pred -C-------CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH-----HhcCChhHHHH-HHHHH
Q 048235 193 -K-------PLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF--CSPNLVTCNIMVKAY-----LEHGLFEEAMK-LFQEM 256 (455)
Q Consensus 193 -~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~-----~~~~~~~~a~~-~~~~m 256 (455)
. .-..+|..-|+.|...++-.....++++.... --|.+.... +|+-| .+.|++++|-. +|+..
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHH
Confidence 1 12456888889999888888888888876432 334444333 33333 45678887754 33333
Q ss_pred ---HhcccccchhhccCCCCCCcH---HHHHHHHHHHHHcCCHHHHHHHHH--HHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 048235 257 ---AEDSNHINREYDKKGLVIPDI---YTFNTMLDACAAEKRWDDLELVYK--RMLHHGLHFNAKRHLRMILDASRAGKV 328 (455)
Q Consensus 257 ---~~~~~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~g~~ 328 (455)
-+.| .|.. --|..|.+.+.+.|- .-|+ ++.-..-.|.......++.+|- ..++
T Consensus 259 KNYDEsG-------------spRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ-~NdI 319 (440)
T KOG1464|consen 259 KNYDESG-------------SPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQ-NNDI 319 (440)
T ss_pred hcccccC-------------CcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHh-cccH
Confidence 3344 2322 234555556665541 0111 1112223455667777888874 4555
Q ss_pred HHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhh
Q 048235 329 ELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLV 371 (455)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 371 (455)
.+-++++..-. ..+..+..+.++...+++.=+..--+++++
T Consensus 320 ~eFE~Il~~~~--~~IM~DpFIReh~EdLl~niRTQVLlkLIk 360 (440)
T KOG1464|consen 320 IEFERILKSNR--SNIMDDPFIREHIEDLLRNIRTQVLLKLIK 360 (440)
T ss_pred HHHHHHHHhhh--ccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555554432 233445567777777765444444444444
No 285
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.88 E-value=1.7 Score=31.09 Aligned_cols=60 Identities=8% Similarity=0.078 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048235 75 GAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVN 134 (455)
Q Consensus 75 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 134 (455)
+..+-++.+....+.|+.....+.+++|.+.+++..|.++|+.++.........|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 566777778778888999999999999999999999999999988765544446766655
No 286
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.75 E-value=22 Score=40.60 Aligned_cols=152 Identities=7% Similarity=-0.043 Sum_probs=97.0
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048235 13 IAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNA-VLNACVRRKQWEGAFWVLQQLKQQGQKPS 91 (455)
Q Consensus 13 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 91 (455)
+..+--+++.+.+|+-.+++-... .....-...+.. +...|..-++++....+...-.. +
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~--------------ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~ 1449 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRST--------------EKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----D 1449 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccc--------------cchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----C
Confidence 444556778888999888884211 001222233444 44489999999988887775211 2
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHH
Q 048235 92 ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD-LARC 170 (455)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-l~~~ 170 (455)
...+. -|-.....|++..|...|+.+.+..++...+++-++......|.++..+-..+-.... ..++...++. =+.+
T Consensus 1450 ~sl~~-qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~ea 1527 (2382)
T KOG0890|consen 1450 PSLYQ-QILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEA 1527 (2382)
T ss_pred ccHHH-HHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHH
Confidence 22223 3344678899999999999999888777888888888888888888877755554433 2333333332 3344
Q ss_pred HHhcCCHHHHHHHHH
Q 048235 171 LCSAGKCEEALMQMD 185 (455)
Q Consensus 171 ~~~~g~~~~a~~~~~ 185 (455)
-.+.++++.......
T Consensus 1528 aW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1528 AWRLSQWDLLESYLS 1542 (2382)
T ss_pred Hhhhcchhhhhhhhh
Confidence 466777777766554
No 287
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.63 E-value=5.3 Score=33.28 Aligned_cols=136 Identities=9% Similarity=-0.029 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHh
Q 048235 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRL 358 (455)
Q Consensus 279 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (455)
|.+..++.+.+.+.+.+++...+.-.+... .|...-..++..++-.|++++|..-++-.....+.... -..+|..++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~--~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV--GASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch--HHHHHHHHH
Confidence 344556777888899999999888777432 23445566777889999999999888877665544333 345666666
Q ss_pred hccchHHHHHHhhhcCCCCCccccHHHHHH-HHhhhcccCCcc-hHHHHHHHhccccccccCC
Q 048235 359 ENKDYGSAISCLVSHPVSGSPEFSRNAWLK-FFKENSQHFGQD-TLIQLLHEASSSLTTRNGS 419 (455)
Q Consensus 359 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~ 419 (455)
+........--=+..|--... ....|.. ++.+.+++..+. ++.....+...+--|..+.
T Consensus 80 r~ea~R~evfag~~~Pgflg~--p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 80 RCEAARNEVFAGGAVPGFLGG--PSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HHHHHHHHHhccCCCCCCcCC--CCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 554444433322233322221 1256666 455566666655 7677777777766676543
No 288
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.52 E-value=1.4 Score=31.16 Aligned_cols=62 Identities=13% Similarity=0.159 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 048235 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMV 237 (455)
Q Consensus 176 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 237 (455)
+.-++.+-++.+......|++.+..+.+++|.+.+++..|.++|+.++..+..+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 44555566666666667777777777777777777777777777777654444444555444
No 289
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.50 E-value=5.5 Score=33.16 Aligned_cols=181 Identities=13% Similarity=0.083 Sum_probs=101.8
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048235 106 GKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMD 185 (455)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 185 (455)
|-+..|.-=|.+.....|.-+.+||-|.--+...|+++.|.+.|+...+.+..-+-...|. .-++.--|++.-|.+-+-
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchHhhHHHHH
Confidence 3344444445555554555667888888888889999999999999888763322222222 222334688888887766
Q ss_pred HHHHcCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhccccc
Q 048235 186 KICKVANK-PLVVSYTGLIQACLDSGNIQNAAYIFN-QMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263 (455)
Q Consensus 186 ~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 263 (455)
..-+...+ |-...|.-++. ..-++.+|..-+. +... .+..-|...|..|.- |+..+ ..+++++....
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~---~d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~a--- 226 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK---SDKEQWGWNIVEFYL-GKISE-ETLMERLKADA--- 226 (297)
T ss_pred HHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh---ccHhhhhHHHHHHHH-hhccH-HHHHHHHHhhc---
Confidence 66655432 22233332222 2334555554333 3332 555555554444432 22221 23444444322
Q ss_pred chhhccCCCCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048235 264 NREYDKKGLVIPD-------IYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308 (455)
Q Consensus 264 ~~~~~~~~~~~p~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 308 (455)
.-+ ..||--|..-+...|+.++|..+|+-.+..++
T Consensus 227 ----------~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 227 ----------TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred ----------cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 111 35666677777888888888888887777543
No 290
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.38 E-value=0.83 Score=39.95 Aligned_cols=103 Identities=12% Similarity=0.141 Sum_probs=53.6
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCH
Q 048235 51 PRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG---QKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNA 126 (455)
Q Consensus 51 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 126 (455)
.|.+.+..+...++..-....+++.+...+-+++.+. ..|+... ...++.+ -.-+.+.++.++..=.+-|. ||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccch
Confidence 4445555555555555555566666666655554421 1222111 1222222 23344555555555444444 666
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048235 127 LAYKVLVNTLWREGKTDEAVSAVEDMERR 155 (455)
Q Consensus 127 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 155 (455)
.+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 66666666666666666666666655544
No 291
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.07 E-value=0.22 Score=27.65 Aligned_cols=31 Identities=32% Similarity=0.382 Sum_probs=18.4
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCChHHHH
Q 048235 116 RKVQKSYIPNALAYKVLVNTLWREGKTDEAV 146 (455)
Q Consensus 116 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 146 (455)
++..+..|.+..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444444556666666666666666666654
No 292
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.07 E-value=2.6 Score=32.67 Aligned_cols=67 Identities=9% Similarity=0.009 Sum_probs=47.8
Q ss_pred HHHHHHHHHH---HHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCh
Q 048235 277 IYTFNTMLDA---CAAEKRWDDLELVYKRMLHHGLHFNA---KRHLRMILDASRAGKVELLEITWEHLARADRITPP 347 (455)
Q Consensus 277 ~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 347 (455)
....+.||+. -...++.+++..+++.|.- +.|+. .++...+ +...|++.+|.++|+++.+..+..|-
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~p~ 79 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRV--LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAPPY 79 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCchH
Confidence 3444444443 3457899999999999988 44543 3444333 68899999999999999888766553
No 293
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.94 E-value=0.46 Score=26.75 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048235 59 VYNAVLNACVRRKQWEGAFWVLQQLK 84 (455)
Q Consensus 59 ~~~~li~~~~~~~~~~~a~~~~~~m~ 84 (455)
+|+.|...|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666677777777777777777643
No 294
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.93 E-value=4.9 Score=31.27 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=30.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 209 SGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 209 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
..+++++..++..|.-..|.....-..-...+...|++++|.++|+++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5666777777766654322222222233344566777777777777776654
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.72 E-value=0.46 Score=26.73 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048235 232 TCNIMVKAYLEHGLFEEAMKLFQEMAE 258 (455)
Q Consensus 232 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 258 (455)
+|+.|...|.+.|++++|+.+|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888553
No 296
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.71 E-value=1.4 Score=31.53 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048235 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVK 238 (455)
Q Consensus 177 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 238 (455)
.-+..+-++.+......|++.+..+.+++|.+.+++..|.++|+.++..+.+....|..++.
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 33455556666666677777777777788888888888888887776654444335555443
No 297
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.60 E-value=9.8 Score=35.71 Aligned_cols=125 Identities=10% Similarity=0.003 Sum_probs=78.5
Q ss_pred HcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048235 104 ACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183 (455)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 183 (455)
..|++-.|.+-+.....+.+.++.........+...|+++.+...+...... +.....+...+++...+.|+++.|..+
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 4566655555444444444433333333444556778899988888766543 334455677788888889999999998
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 048235 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNL 230 (455)
Q Consensus 184 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 230 (455)
-..|....+. ++.+.....-.--..|-++++.-.|+++-...+|..
T Consensus 380 a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 380 AEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 8888877665 444333333333445667888888887755444433
No 298
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.53 E-value=0.035 Score=43.61 Aligned_cols=126 Identities=16% Similarity=0.179 Sum_probs=87.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 048235 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315 (455)
Q Consensus 236 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 315 (455)
+|..+.+.+.+.....+++.+...+ ...+....+.++..|++.++.++..++++.. .+. -.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~------------~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~--~~y-----d~ 73 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKEN------------KENNPDLHTLLLELYIKYDPYEKLLEFLKTS--NNY-----DL 73 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTS------------TC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS--SSS------C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcc------------cccCHHHHHHHHHHHHhcCCchHHHHHcccc--ccc-----CH
Confidence 5667777888888889999998765 4457888899999999998878888888721 122 23
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcc
Q 048235 316 LRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQ 395 (455)
Q Consensus 316 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 395 (455)
..++..|.+.|.++++..++.++-... ..+..+...++++.|++++.+... + .+|..++..+..
T Consensus 74 ~~~~~~c~~~~l~~~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~~~~---~----~l~~~l~~~~l~ 137 (143)
T PF00637_consen 74 DKALRLCEKHGLYEEAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKKVDD---P----ELWEQLLKYCLD 137 (143)
T ss_dssp THHHHHHHTTTSHHHHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGGCSS---S----HHHHHHHHHHCT
T ss_pred HHHHHHHHhcchHHHHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHhcCc---H----HHHHHHHHHHHh
Confidence 356777888899999988887753221 111123467888888877776642 2 899998885443
Q ss_pred c
Q 048235 396 H 396 (455)
Q Consensus 396 ~ 396 (455)
.
T Consensus 138 ~ 138 (143)
T PF00637_consen 138 S 138 (143)
T ss_dssp S
T ss_pred c
Confidence 3
No 299
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.37 E-value=17 Score=36.31 Aligned_cols=324 Identities=11% Similarity=0.088 Sum_probs=176.2
Q ss_pred HcCCCCCHhhHHHH-----HHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCC
Q 048235 85 QQGQKPSATTYGLV-----MEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKT--DEAVSAVEDMERRGI 157 (455)
Q Consensus 85 ~~~~~p~~~~~~~l-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~ 157 (455)
.-|++.+..-|..+ ++-+...+.+..|.++-..+......+..+|.....-+.+..+. +++.+.+++=...-.
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 35677776666543 55566778888888887776543333367777777777776332 223333322222212
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------
Q 048235 158 VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANK----PLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-------- 225 (455)
Q Consensus 158 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------- 225 (455)
.....|..+.+.....|+.+-|..+++.=...+.. .+..-+...+.-+...|+.+....++-.+...
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~ 583 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM 583 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 23445777777777889999998877643222211 01222445556667778888777777766542
Q ss_pred ----CCCCHHHHHHHHH--------HHHhcCChhHHHHHHH--HHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcC
Q 048235 226 ----CSPNLVTCNIMVK--------AYLEHGLFEEAMKLFQ--EMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291 (455)
Q Consensus 226 ----~~~~~~~~~~li~--------~~~~~~~~~~a~~~~~--~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 291 (455)
.+.....|--+++ .+.+.++...+...|. ...... ...+..|+. ......|.+..
T Consensus 584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~--------~~~~r~~~l---k~~a~~~a~sk 652 (829)
T KOG2280|consen 584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAE--------TIEGRIPAL---KTAANAFAKSK 652 (829)
T ss_pred HHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhh--------hhcccchhH---HHHHHHHhhhh
Confidence 1112222222222 0111122222221111 100000 000122332 23333444433
Q ss_pred C----------HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhc
Q 048235 292 R----------WDDLELVYKRMLH-HGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLEN 360 (455)
Q Consensus 292 ~----------~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (455)
. ..+-+++.+.+.. .|......+.+.-+.-+...|+.++|.++-.+. .++...++..-+..+...
T Consensus 653 ~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----kipdKr~~wLk~~aLa~~ 728 (829)
T KOG2280|consen 653 EKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----KIPDKRLWWLKLTALADI 728 (829)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----CCcchhhHHHHHHHHHhh
Confidence 2 2222333344433 444444456777788888899999998876654 444444444455556688
Q ss_pred cchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHhccccccccCCCchhHHHHHHhHHhhhhccCC
Q 048235 361 KDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQSP 440 (455)
Q Consensus 361 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 440 (455)
+++++-.++.++... | ..|.-++.+...+++.+|+.+++-+ ..+ +......|.+.|++.+|...
T Consensus 729 ~kweeLekfAkskks-P------IGy~PFVe~c~~~~n~~EA~KYipr----v~~-----l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 729 KKWEELEKFAKSKKS-P------IGYLPFVEACLKQGNKDEAKKYIPR----VGG-----LQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hhHHHHHHHHhccCC-C------CCchhHHHHHHhcccHHHHhhhhhc----cCC-----hHHHHHHHHHhccHHHHHHH
Confidence 999999888887643 3 5566677755566666666665543 211 11678888888888776654
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.75 E-value=7 Score=30.92 Aligned_cols=70 Identities=10% Similarity=-0.108 Sum_probs=48.9
Q ss_pred cHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHhhcCCCCCh
Q 048235 276 DIYTFNTMLDA---CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI-LDASRAGKVELLEITWEHLARADRITPP 347 (455)
Q Consensus 276 ~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 347 (455)
+..+.+.||.. -...++.+++..++..+.- +.|.......+- ..+.+.|++.+|..+|+.+.+..+..|.
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~ 79 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY 79 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH
Confidence 34445555543 4567899999999999988 455543332222 2268999999999999999877765554
No 301
>PRK11906 transcriptional regulator; Provisional
Probab=90.33 E-value=16 Score=34.41 Aligned_cols=162 Identities=15% Similarity=0.136 Sum_probs=101.4
Q ss_pred hHH--HHHHHHHHhcC-----CHHHHHHHHHHHHH-cCCCCC-HhhHHHHHHHHHH---------cCChhHHHHHHHHHH
Q 048235 58 VVY--NAVLNACVRRK-----QWEGAFWVLQQLKQ-QGQKPS-ATTYGLVMEVMLA---------CGKYNLVYEFFRKVQ 119 (455)
Q Consensus 58 ~~~--~~li~~~~~~~-----~~~~a~~~~~~m~~-~~~~p~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 119 (455)
..| ..++++..... ..+.|+.+|.+... +.+.|+ ...|..+..++.. ..+..+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 66776665532 25678888888883 234444 4444444333221 122345677777777
Q ss_pred hcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcHHH
Q 048235 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANK-PLVVS 198 (455)
Q Consensus 120 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~ 198 (455)
..++.|..+...+..+..-.++++.|..+|++....+ +....+|......+.-.|+.++|.+.+++..+..+. .-...
T Consensus 332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 7777888888888888888888999999999888765 223455555566666789999999998886665321 11222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 048235 199 YTGLIQACLDSGNIQNAAYIFNQ 221 (455)
Q Consensus 199 ~~~li~~~~~~~~~~~a~~~~~~ 221 (455)
....++.|+.. ..+.|..++-+
T Consensus 411 ~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 411 IKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHcCC-chhhhHHHHhh
Confidence 33334455543 45666666644
No 302
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.28 E-value=0.89 Score=24.94 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 278 YTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 278 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3456666667777777777777776666
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.63 E-value=0.99 Score=24.74 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 231 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
.+|..+..+|...|++++|+..|++.++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 467788888999999999999999988843
No 304
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.34 E-value=0.19 Score=39.39 Aligned_cols=82 Identities=13% Similarity=0.081 Sum_probs=41.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048235 98 VMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176 (455)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 176 (455)
++..+.+.+.++....+++.+...+. .+....+.++..|++.++.+...++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34444555666666666666654433 44566666666666665555555555411 11111234444555555
Q ss_pred HHHHHHHHHH
Q 048235 177 CEEALMQMDK 186 (455)
Q Consensus 177 ~~~a~~~~~~ 186 (455)
++++.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 305
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.24 E-value=24 Score=34.89 Aligned_cols=183 Identities=13% Similarity=0.093 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHH--HH-HHhcCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC--
Q 048235 108 YNLVYEFFRKVQKSYIPNALAYKVLV--NT-LWREGKTDEAVSAVEDMER-------RGIVGSAALYYDLARCLCSAG-- 175 (455)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~~~~li--~~-~~~~g~~~~a~~~~~~m~~-------~~~~~~~~~~~~l~~~~~~~g-- 175 (455)
...+.++++.....+.......-.++ .+ +....|++.|+..|....+ .| ++.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677888777765432222222222 22 4466789999999988877 44 3334566777776632
Q ss_pred ---CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--hcCChhHH
Q 048235 176 ---KCEEALMQMDKICKVANKPLVVSYTGLIQACLD-SGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL--EHGLFEEA 249 (455)
Q Consensus 176 ---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a 249 (455)
+.+.|+.++...-..|.+ +.......+..... ..+...|.++|...-....+....+.+++.... ...+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 667788888888887743 44443333332222 245778888888876533333322222222222 23467788
Q ss_pred HHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048235 250 MKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308 (455)
Q Consensus 250 ~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 308 (455)
..++++..+.| .|...--...+..+.. ++.+.+.-.+..+.+.|.
T Consensus 384 ~~~~k~aA~~g-------------~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 384 FAYYKKAAEKG-------------NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHcc-------------ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 88888888876 2222222223333344 666767666666666554
No 306
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.14 E-value=13 Score=31.51 Aligned_cols=76 Identities=8% Similarity=-0.014 Sum_probs=43.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHH--H-HhcCChHHHHHHHHHHhhcCCCCChHhHHHHHH
Q 048235 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL---RMILD--A-SRAGKVELLEITWEHLARADRITPPALIKERFC 355 (455)
Q Consensus 282 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~ll~~--~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 355 (455)
-+..--+..+++.+|+.+|++.....+..+..-|. .++.+ | .-..+.-.+...+++-.+.+|...++--..++.
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk 238 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLK 238 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHH
Confidence 33344456678889999999887754443332221 12222 2 233666667777777777777766643333443
Q ss_pred HH
Q 048235 356 NR 357 (455)
Q Consensus 356 ~~ 357 (455)
.+
T Consensus 239 ~L 240 (288)
T KOG1586|consen 239 DL 240 (288)
T ss_pred HH
Confidence 33
No 307
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.35 E-value=12 Score=30.10 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=11.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCC
Q 048235 172 CSAGKCEEALMQMDKICKVAN 192 (455)
Q Consensus 172 ~~~g~~~~a~~~~~~m~~~~~ 192 (455)
++.++.++|+.-|..+.+.|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~ 89 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGY 89 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCC
Confidence 344555555555555555543
No 308
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.35 E-value=1.5 Score=23.89 Aligned_cols=27 Identities=7% Similarity=0.132 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 279 TFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 279 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
.|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555556666666666666666555
No 309
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.90 E-value=7.9 Score=34.20 Aligned_cols=102 Identities=13% Similarity=0.109 Sum_probs=63.8
Q ss_pred CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 048235 87 GQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI----PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162 (455)
Q Consensus 87 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 162 (455)
|......+...++.......+++.++..+-++..... ++. +-.+.++.+. .-++++++.++..=.+-|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 4444555555555555566777778777777765421 111 1122223222 235667777777777778888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048235 163 LYYDLARCLCSAGKCEEALMQMDKICKV 190 (455)
Q Consensus 163 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 190 (455)
+++.+|..+.+.+++.+|.++.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888877776665544
No 310
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=87.45 E-value=22 Score=32.29 Aligned_cols=122 Identities=16% Similarity=0.102 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHH--
Q 048235 213 QNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAA-- 289 (455)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~-- 289 (455)
+.-+.++++..+..+.+...+..++..+.+..+.++..+-|+++.... | +...|...|.....
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--------------~~~~~LW~~yL~~~q~~~ 113 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--------------PGSPELWREYLDFRQSNF 113 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--------------CCChHHHHHHHHHHHHHh
Confidence 445666777665566777777788888888888888888888888754 4 56777777765544
Q ss_pred -cCCHHHHHHHHHHHHH------cCC------CC--CHHH---HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChH
Q 048235 290 -EKRWDDLELVYKRMLH------HGL------HF--NAKR---HLRMILDASRAGKVELLEITWEHLARADRITPPA 348 (455)
Q Consensus 290 -~~~~~~a~~~~~~m~~------~~~------~p--~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 348 (455)
.-.++.+..+|.+..+ .+. .+ +... +..+..-+..+|..+.|..+|+.+++-+...|..
T Consensus 114 ~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 114 ASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPES 190 (321)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccc
Confidence 2245555555555443 111 01 1112 2222333478899999999999998887766653
No 311
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=86.73 E-value=29 Score=32.97 Aligned_cols=370 Identities=12% Similarity=0.095 Sum_probs=191.7
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048235 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLK 84 (455)
Q Consensus 5 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 84 (455)
.|+..|...+..+-+.+.+.+...+|.+|... ++..||.+.+.+.=. |-...+++.|..+|.+-.
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~--------------Hp~~~dLWI~aA~we-fe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK--------------HPNNPDLWIYAAKWE-FEINLNIESARALFLRGL 167 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHh--------------CCCCchhHHhhhhhH-HhhccchHHHHHHHHHHh
Confidence 48888999998888888899999999999864 444555555544322 223334777777777766
Q ss_pred HcCCCCCHhhHHHHHHHH---H-------------------------------------HcCC---h-hHHHHH------
Q 048235 85 QQGQKPSATTYGLVMEVM---L-------------------------------------ACGK---Y-NLVYEF------ 114 (455)
Q Consensus 85 ~~~~~p~~~~~~~l~~~~---~-------------------------------------~~~~---~-~~a~~~------ 114 (455)
+.+.. +...|....+.- . ..+. . +...+.
T Consensus 168 R~npd-sp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~ke 246 (568)
T KOG2396|consen 168 RFNPD-SPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKE 246 (568)
T ss_pred hcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHH
Confidence 65333 333333222210 0 0000 0 001111
Q ss_pred -----HHHHHhcCCCCHHHHHHHH----HHHHh---------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048235 115 -----FRKVQKSYIPNALAYKVLV----NTLWR---------------EGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170 (455)
Q Consensus 115 -----~~~~~~~~~~~~~~~~~li----~~~~~---------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 170 (455)
.+.+....+.++.+|.-+. .++.+ ..+.+....+|++..+. .++...+...|..
T Consensus 247 l~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~ 324 (568)
T KOG2396|consen 247 LQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITF 324 (568)
T ss_pred HHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHH
Confidence 1112222333333333222 12211 12344556777777654 4566666666666
Q ss_pred HHhcC------CHHHHHHHHHHHHHcC-CCC-cHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048235 171 LCSAG------KCEEALMQMDKICKVA-NKP-LVVSYTGLIQACLDSGNIQN-AAYIFNQMKNFCSPNLVTCNIMVKAYL 241 (455)
Q Consensus 171 ~~~~g------~~~~a~~~~~~m~~~~-~~~-~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~li~~~~ 241 (455)
|...- .......+++.....+ ..+ ...-|..+...++....... |..+..+. ...+...|-.-+....
T Consensus 325 ~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~---f~~s~k~~~~kl~~~~ 401 (568)
T KOG2396|consen 325 CLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTEL---FRDSGKMWQLKLQVLI 401 (568)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHH---hcchHHHHHHHHHHHH
Confidence 54322 3455556666554433 223 34556666666666555433 33333222 3466666666555555
Q ss_pred hc-CChhHH-HHHHHHHHhcccccchhhccCCCCCCcHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HH
Q 048235 242 EH-GLFEEA-MKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML-DACAAEKRWDDLELVYKRMLHHGLHFNAKRH-LR 317 (455)
Q Consensus 242 ~~-~~~~~a-~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ 317 (455)
.. .++.-- ..+|......- ..+....|+... ..+......+.....+..+. .|+..|+ +.
T Consensus 402 ~s~sD~q~~f~~l~n~~r~~~------------~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~----~~~~~tl~s~ 465 (568)
T KOG2396|consen 402 ESKSDFQMLFEELFNHLRKQV------------CSELLISWASASEGDSLQEDTLDLIISALLSVI----GADSVTLKSK 465 (568)
T ss_pred hhcchhHHHHHHHHHHHHHHh------------cchhHHHHHHHhhccchhHHHHHHHHHHHHHhc----CCceeehhHH
Confidence 33 122222 22333343322 234455565555 11122222223333333332 3444444 34
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHh------hccchHHHHHHhhhcCCCCCccccHHHHHHHHh
Q 048235 318 MILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRL------ENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFK 391 (455)
Q Consensus 318 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 391 (455)
++.-+.+.|-.++|...+..+....|. ++ .++..++ ..-+...+..+++.+....+. ++.+|..++.
T Consensus 466 ~l~~~~e~~~~~~ark~y~~l~~lpp~---sl--~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~--d~~lw~~y~~ 538 (568)
T KOG2396|consen 466 YLDWAYESGGYKKARKVYKSLQELPPF---SL--DLFRKMIQFEKEQESCNLANIREYYDRALREFGA--DSDLWMDYMK 538 (568)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhCCCc---cH--HHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCC--ChHHHHHHHH
Confidence 566678888899999999988765432 22 2333332 222355566666666544443 4489999888
Q ss_pred hhcccCCcchHHHHHHHhccccccccC
Q 048235 392 ENSQHFGQDTLIQLLHEASSSLTTRNG 418 (455)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~p~~~ 418 (455)
.-...|..+......-+..+-++|+..
T Consensus 539 ~e~~~g~~en~~~~~~ra~ktl~~~~~ 565 (568)
T KOG2396|consen 539 EELPLGRPENCGQIYWRAMKTLQGESA 565 (568)
T ss_pred hhccCCCcccccHHHHHHHHhhChhhh
Confidence 655666666666677777776766654
No 312
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.43 E-value=13 Score=30.74 Aligned_cols=77 Identities=12% Similarity=0.003 Sum_probs=51.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHhcCChhH
Q 048235 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF----CSPNLVTCNIMVKAYLEHGLFEE 248 (455)
Q Consensus 173 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~ 248 (455)
..-.-+.|.+.|-.+...+.--++.....|...|. ..+.+++.+++.+..+. ..+|+..+..|+..|-+.|+++.
T Consensus 118 sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 33345667777777776665445555555555444 56777888777776543 36678888888888888888877
Q ss_pred HH
Q 048235 249 AM 250 (455)
Q Consensus 249 a~ 250 (455)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 313
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.42 E-value=14 Score=35.83 Aligned_cols=97 Identities=15% Similarity=0.060 Sum_probs=50.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHH
Q 048235 207 LDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286 (455)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 286 (455)
.+.|+++.|.++..+. .+..-|..|..+....+++..|.+.|.+.... ..|+-.
T Consensus 648 l~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~---------------------~~LlLl 701 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDL---------------------GSLLLL 701 (794)
T ss_pred hhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcch---------------------hhhhhh
Confidence 3455666665555443 34455666666666666666666666555442 244455
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 048235 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITW 335 (455)
Q Consensus 287 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 335 (455)
+...|+-+....+-....+.|.. |.-..+|...|++++..+++
T Consensus 702 ~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 702 YTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred hhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHH
Confidence 55555555444444444444422 12223344556666555543
No 314
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.31 E-value=14 Score=34.83 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=23.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048235 208 DSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
..|+++.+.+.+......+.....+..++++.....|++++|..+-..|+..
T Consensus 335 ~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ 386 (831)
T PRK15180 335 HLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN 386 (831)
T ss_pred HhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc
Confidence 3444444444444443333333444444444444444444444444444443
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.10 E-value=2.1 Score=24.57 Aligned_cols=29 Identities=34% Similarity=0.510 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048235 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 231 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
.+++.|...|...|++++|..++++....
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46777888888888888888888877653
No 316
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.82 E-value=17 Score=29.23 Aligned_cols=24 Identities=13% Similarity=0.326 Sum_probs=12.5
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHH
Q 048235 51 PRLEPDIVVYNAVLNACVRRKQWE 74 (455)
Q Consensus 51 ~~~~~~~~~~~~li~~~~~~~~~~ 74 (455)
.+++|+...|..+++.+.+.|++.
T Consensus 23 ~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 23 HNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 344555555555555555555543
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.68 E-value=2.4 Score=24.34 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 048235 128 AYKVLVNTLWREGKTDEAVSAVEDME 153 (455)
Q Consensus 128 ~~~~li~~~~~~g~~~~a~~~~~~m~ 153 (455)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44455555555555555555555443
No 318
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.46 E-value=38 Score=33.00 Aligned_cols=349 Identities=11% Similarity=0.035 Sum_probs=200.4
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHc-CCC-CC
Q 048235 15 VTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVR-RKQWEGAFWVLQQLKQQ-GQK-PS 91 (455)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~-~~~-p~ 91 (455)
..=.+.|..+.+.++|++-. .+++.++..|...+..+.. .|+.+.....|+..... |.. ..
T Consensus 87 ~~E~klg~~~~s~~Vfergv----------------~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S 150 (577)
T KOG1258|consen 87 DYEYKLGNAENSVKVFERGV----------------QAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLS 150 (577)
T ss_pred HHHHHhhhHHHHHHHHHHHH----------------HhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhc
Confidence 33456799999999999998 5778899999988877665 47788888899888773 332 25
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHH-HHHHHHHHHHh-----cCChHHHHHHHHHHHH-----------
Q 048235 92 ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNAL-AYKVLVNTLWR-----EGKTDEAVSAVEDMER----------- 154 (455)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~-----~g~~~~a~~~~~~m~~----------- 154 (455)
...|-..|.--..++++.....+++++......... .|......... ....+++.++-.....
T Consensus 151 ~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~ 230 (577)
T KOG1258|consen 151 DPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPL 230 (577)
T ss_pred cHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChh
Confidence 666777777777888999999999988764211111 11111111111 1223333332222221
Q ss_pred ---------CCCCCCHHH--HHHHHHH-------HHhcCCHHHHHHHHHHHHHc---CC----CCcHHHHHHHHHHHHhc
Q 048235 155 ---------RGIVGSAAL--YYDLARC-------LCSAGKCEEALMQMDKICKV---AN----KPLVVSYTGLIQACLDS 209 (455)
Q Consensus 155 ---------~~~~~~~~~--~~~l~~~-------~~~~g~~~~a~~~~~~m~~~---~~----~~~~~~~~~li~~~~~~ 209 (455)
.+.+....+ .+.+-.. +-...........++.-.+. .+ +++..+|..-+.--.+.
T Consensus 231 e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~ 310 (577)
T KOG1258|consen 231 EELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITL 310 (577)
T ss_pred HHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhc
Confidence 110111000 0011110 01111111111222221111 01 23467788888888999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHH
Q 048235 210 GNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289 (455)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 289 (455)
|+++.+.-.|++..--+..-...|-..+.-....|+.+-|..++....+--++ ..|....+.+. .+-.
T Consensus 311 g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k----------~~~~i~L~~a~--f~e~ 378 (577)
T KOG1258|consen 311 GDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK----------KTPIIHLLEAR--FEES 378 (577)
T ss_pred ccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC----------CCcHHHHHHHH--HHHh
Confidence 99999999999986544455566666666666679999998888887765411 22333333322 2345
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChHHHH---HHHHHHhhcCCCCChHhHHHHHHHH-----hhc
Q 048235 290 EKRWDDLELVYKRMLHHGLHFNAKR-HLRMILDASRAGKVELLE---ITWEHLARADRITPPALIKERFCNR-----LEN 360 (455)
Q Consensus 290 ~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 360 (455)
.|+++.|..+++.+.+.- |+... -..-+....+.|..+.+. +++..... +...+.- ...++... .-.
T Consensus 379 ~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~~~~i-~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKENNGI-LEKLYVKFARLRYKIR 454 (577)
T ss_pred hccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-cccCcch-hHHHHHHHHHHHHHHh
Confidence 679999999999998853 55422 122233356788888877 44444432 2222221 12222221 145
Q ss_pred cchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccC
Q 048235 361 KDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHF 397 (455)
Q Consensus 361 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 397 (455)
++.+.|..++..+....+. ....|..+......+.
T Consensus 455 ~d~~~a~~~l~~~~~~~~~--~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEANDILPD--CKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhhcCCc--cHHHHHHHHHHHHhCC
Confidence 7888888888877654433 4477777777533443
No 319
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.15 E-value=3.4 Score=22.37 Aligned_cols=30 Identities=13% Similarity=-0.037 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 048235 314 RHLRMILDASRAGKVELLEITWEHLARADR 343 (455)
Q Consensus 314 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 343 (455)
.+..+-..+...|++++|.+.|++.++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 456667778889999999999988877664
No 320
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=84.20 E-value=16 Score=27.54 Aligned_cols=60 Identities=10% Similarity=0.086 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048235 75 GAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVN 134 (455)
Q Consensus 75 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 134 (455)
+..+.++.+...++.|+.......+++|.+.+|+..|..+|+.++....+....|-.++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 456667777788889999999999999999999999999999988766554445555443
No 321
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.19 E-value=9.4 Score=31.90 Aligned_cols=15 Identities=53% Similarity=0.797 Sum_probs=5.9
Q ss_pred HHHHHHhcCCHHHHH
Q 048235 167 LARCLCSAGKCEEAL 181 (455)
Q Consensus 167 l~~~~~~~g~~~~a~ 181 (455)
+++.+|-.|++++|.
T Consensus 41 lfqLlcvaGdw~kAl 55 (273)
T COG4455 41 LFQLLCVAGDWEKAL 55 (273)
T ss_pred HHHHHhhcchHHHHH
Confidence 333333344444443
No 322
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.10 E-value=28 Score=30.45 Aligned_cols=197 Identities=13% Similarity=0.161 Sum_probs=117.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH-------HHHHHHHHHcCChhHHHHHHHHHHhc-----CCCCHHHHH
Q 048235 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTY-------GLVMEVMLACGKYNLVYEFFRKVQKS-----YIPNALAYK 130 (455)
Q Consensus 63 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-------~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~ 130 (455)
+.+-..+.+++++|...+.+....|+..+..+. ..+...|...|+....-+........ .+...-...
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 445566789999999999999999987765554 45677888899887665555443221 112344555
Q ss_pred HHHHHHHhc-CChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH----HHHHcCCCCcHHHHH
Q 048235 131 VLVNTLWRE-GKTDEAVSAVEDMERRGIVGS-----AALYYDLARCLCSAGKCEEALMQMD----KICKVANKPLVVSYT 200 (455)
Q Consensus 131 ~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~----~m~~~~~~~~~~~~~ 200 (455)
+|+..+-.. ..++..+.+.....+.-.+-. ...=.-++..+.+.|++.+|+.+.. ++.+..-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 666555443 445666666655544321111 1122347888999999999996655 455555555533322
Q ss_pred H-HHHHHHhcCCHHHHHHHHHHHHh---c--CCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHhc
Q 048235 201 G-LIQACLDSGNIQNAAYIFNQMKN---F--CSPNLVTCNIMVKAY--LEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 201 ~-li~~~~~~~~~~~a~~~~~~~~~---~--~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~ 259 (455)
. --.+|-..++..++..-+...+. . +||-...---|+++- |...++..|...|-+..+.
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 2 22445555666666665555432 1 566555555555543 3445677777777776653
No 323
>PRK09687 putative lyase; Provisional
Probab=84.00 E-value=30 Score=30.69 Aligned_cols=234 Identities=10% Similarity=0.013 Sum_probs=136.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCH----HHHHHHH
Q 048235 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQW----EGAFWVL 80 (455)
Q Consensus 5 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~ 80 (455)
+|.......+.++...|. +++...+..+.. .+|...-...+.++...|+. +++...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~------------------~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L 95 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS------------------SKNPIERDIGADILSQLGMAKRCQDNVFNIL 95 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh------------------CCCHHHHHHHHHHHHhcCCCccchHHHHHHH
Confidence 444455555666666664 334444444443 45666666667777777763 4566666
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHHcCCh-----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048235 81 QQLKQQGQKPSATTYGLVMEVMLACGKY-----NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERR 155 (455)
Q Consensus 81 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 155 (455)
..+... .|+...-...+.++...+.. ..+...+...... ++..+-...+.++++.++ +.++..+-.+.+.
T Consensus 96 ~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D--~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d 170 (280)
T PRK09687 96 NNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD--KSTNVRFAVAFALSVIND-EAAIPLLINLLKD 170 (280)
T ss_pred HHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC--CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC
Confidence 666433 34555555555555554321 1223333222221 466676777788887776 4566666666653
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 048235 156 GIVGSAALYYDLARCLCSAG-KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCN 234 (455)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 234 (455)
++...-..-+.++...+ +...+...+..+.. .++..+-...+.++++.++..-.-.+.+.+.. ++ ...
T Consensus 171 ---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~---~~--~~~ 239 (280)
T PRK09687 171 ---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDKRVLSVLIKELKK---GT--VGD 239 (280)
T ss_pred ---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCChhHHHHHHHHHcC---Cc--hHH
Confidence 33333344455555442 23456666665553 34677778888888888885544444444432 33 234
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHH
Q 048235 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288 (455)
Q Consensus 235 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 288 (455)
..+.++...|.. +|+..+..+.+.. ||...-...+.+|.
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~~~--------------~d~~v~~~a~~a~~ 278 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLYKF--------------DDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHhhC--------------CChhHHHHHHHHHh
Confidence 677888888885 6888888888743 67776666666554
No 324
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=83.77 E-value=30 Score=30.47 Aligned_cols=62 Identities=8% Similarity=0.086 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048235 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKV-ANKPLVVSYTGLIQACLDSGNIQNAAYIFN 220 (455)
Q Consensus 159 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 220 (455)
++..+...++..++..+++..-.+++...... +...|...|..+|......|+..-...+.+
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 33334444444444444444444444443332 233344444444444444444444444443
No 325
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.69 E-value=21 Score=28.70 Aligned_cols=134 Identities=18% Similarity=0.174 Sum_probs=81.0
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 048235 91 SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPN--ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA-LYYDL 167 (455)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~l 167 (455)
....|...++ +.+.+..++|+.-|..+.+.+--+ +-..-.+.....+.|+...|...|+++-.-...|-.. -...|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3445555544 356677777777777777654322 2222233445667788888888888876654333321 11111
Q ss_pred --HHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048235 168 --ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225 (455)
Q Consensus 168 --~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 225 (455)
.-.+...|.+++...-.+-+-..+.+.-...-..|.-+-.+.|++.+|.+.|..+...
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 2234467788887777766665554434455566777777888888888888887653
No 326
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.53 E-value=2.5 Score=22.68 Aligned_cols=25 Identities=8% Similarity=-0.000 Sum_probs=13.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcC
Q 048235 318 MILDASRAGKVELLEITWEHLARAD 342 (455)
Q Consensus 318 ll~~~~~~g~~~~a~~~~~~~~~~~ 342 (455)
+..++.+.|++++|.+.|+++++..
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC
Confidence 3344445555555555555555444
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.25 E-value=2.8 Score=22.78 Aligned_cols=27 Identities=4% Similarity=0.154 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 279 TFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 279 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666667777777777766655
No 328
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=83.20 E-value=32 Score=30.33 Aligned_cols=123 Identities=14% Similarity=0.100 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHc-CCCCcHHHHHHHHH
Q 048235 129 YKVLVNTLWREGKTDEAVSAVEDMER-RGIVGSAALYYDLARCLCS-AG-KCEEALMQMDKICKV-ANKPLVVSYTGLIQ 204 (455)
Q Consensus 129 ~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~-~g-~~~~a~~~~~~m~~~-~~~~~~~~~~~li~ 204 (455)
|..|+. ....+.+|+.+|+.... ..+.-|..+...+++.... .+ ....-.++.+-+... +..++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555543 22345667777763322 3356677777777777766 22 233333444444433 35678889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 048235 205 ACLDSGNIQNAAYIFNQMKNF--CSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254 (455)
Q Consensus 205 ~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 254 (455)
.++..+++..-.++++..... ...|...|..+|......|+..-..++..
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 999999999999999988654 56689999999999999999765554443
No 329
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.55 E-value=37 Score=29.93 Aligned_cols=51 Identities=22% Similarity=0.187 Sum_probs=22.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 048235 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218 (455)
Q Consensus 167 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 218 (455)
..+.|...|.+.+|.++.+...... +.+...+-.|+..+...|+--.+.+-
T Consensus 285 va~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~kh 335 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKH 335 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhH
Confidence 3344444555555555444444433 22444444445555555543333333
No 330
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.48 E-value=22 Score=29.38 Aligned_cols=89 Identities=17% Similarity=0.148 Sum_probs=50.4
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048235 102 MLACGKYNLVYEFFRKVQKSYIPN-----ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176 (455)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 176 (455)
+.+.|+++.|..-|......+++. ...|..-..++.+.+.++.|+.-..+.++.+.. .......-..+|.+..+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhh
Confidence 456677777777777776665532 234444455666677777776666666555411 11122222345556666
Q ss_pred HHHHHHHHHHHHHcC
Q 048235 177 CEEALMQMDKICKVA 191 (455)
Q Consensus 177 ~~~a~~~~~~m~~~~ 191 (455)
+++|+.=|..+....
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 666666666665543
No 331
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.23 E-value=20 Score=29.05 Aligned_cols=74 Identities=11% Similarity=0.117 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHhcccccchhhccCCCCCCc-HHHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHcCCCCCHH
Q 048235 246 FEEAMKLFQEMAEDSNHINREYDKKGLVIPD-IYTFNTMLDACAAEK----R-------WDDLELVYKRMLHHGLHFNAK 313 (455)
Q Consensus 246 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~----~-------~~~a~~~~~~m~~~~~~p~~~ 313 (455)
+++|..-|++.+. +.|+ ..++..+..+|...+ + +++|...|++... ..|+..
T Consensus 51 iedAisK~eeAL~--------------I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne 114 (186)
T PF06552_consen 51 IEDAISKFEEALK--------------INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNE 114 (186)
T ss_dssp HHHHHHHHHHHHH--------------H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-H
T ss_pred HHHHHHHHHHHHh--------------cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcH
Confidence 3445555566666 4575 467777777776543 2 4555666666655 568888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 048235 314 RHLRMILDASRAGKVELLEITWEHLARA 341 (455)
Q Consensus 314 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 341 (455)
.|+.-+... ++|-++-.++.+.
T Consensus 115 ~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 115 LYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHHHHHHHH------HhhHHHHHHHHHH
Confidence 888777665 3455555555443
No 332
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.79 E-value=37 Score=29.48 Aligned_cols=170 Identities=15% Similarity=0.190 Sum_probs=88.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc---CC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCHH----HHHH
Q 048235 167 LARCLCSAGKCEEALMQMDKICKV---AN--KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF--CSPNLV----TCNI 235 (455)
Q Consensus 167 l~~~~~~~g~~~~a~~~~~~m~~~---~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~----~~~~ 235 (455)
++....+.+++++.+..+.++..- .+ .-+..+.|++++......+.+....+++.-... ...|.. |-+-
T Consensus 71 miKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtK 150 (440)
T KOG1464|consen 71 MIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTK 150 (440)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccch
Confidence 344444455555554444443211 00 113445555665555555555444444432111 112222 2244
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHH
Q 048235 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH-HGLHFNAKR 314 (455)
Q Consensus 236 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~ 314 (455)
|...|...+.+.+..++++++..+.-.-+.+...+.|. --...|..=|+.|....+-.+...++++... ..--|.+..
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGt-QLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGT-QLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccc-hhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 66777778888888888888766431100011100000 1135677778888888888888888887766 223455543
Q ss_pred HHHHHHHH-----HhcCChHHHHH-HHHHH
Q 048235 315 HLRMILDA-----SRAGKVELLEI-TWEHL 338 (455)
Q Consensus 315 ~~~ll~~~-----~~~g~~~~a~~-~~~~~ 338 (455)
..+|+-| .+.|.+++|.. +|+..
T Consensus 230 -mGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 230 -MGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred -HhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 3455555 56788888764 44444
No 333
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.05 E-value=9.5 Score=33.36 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048235 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187 (455)
Q Consensus 129 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 187 (455)
++...+.|..+|.+.+|.++.+.....+ +.+...+..|+..+...|+--.+..-++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3344455555566666665555555543 334444555555555555544444444443
No 334
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.67 E-value=14 Score=33.06 Aligned_cols=89 Identities=17% Similarity=0.000 Sum_probs=47.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhH
Q 048235 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEE 248 (455)
Q Consensus 169 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 248 (455)
+.|.+.|++++|++.|..-...... +.+++..-..+|.+.+.+..|+.-..........-+..|+.-+.+-...|+..+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 4566677777777777665543321 566666666677777777666655555443222223333333333334444555
Q ss_pred HHHHHHHHHh
Q 048235 249 AMKLFQEMAE 258 (455)
Q Consensus 249 a~~~~~~m~~ 258 (455)
|.+=++..+.
T Consensus 184 AKkD~E~vL~ 193 (536)
T KOG4648|consen 184 AKKDCETVLA 193 (536)
T ss_pred HHHhHHHHHh
Confidence 5554555444
No 335
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=79.34 E-value=18 Score=27.20 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 048235 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMV 237 (455)
Q Consensus 178 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 237 (455)
.+..+.++.+....+.|++.+...-+++|.+.+++..|..+|+.++..+.+....|-.++
T Consensus 66 wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 66 WEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 344555666667777888888888888888888888888888888765555444454443
No 336
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=79.31 E-value=25 Score=27.44 Aligned_cols=89 Identities=9% Similarity=0.073 Sum_probs=66.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHcC
Q 048235 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQ-WEGAFWVLQQLKQQG 87 (455)
Q Consensus 9 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~ 87 (455)
..|+++.-....+.+.-.+.+++.+....... -....+...|+.++.+.+...- --.+..+|+.|++.+
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~----------~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~ 110 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDN----------IIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKND 110 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHH----------HhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcC
Confidence 46788888888888888888888885421000 0013566789999999877766 556788899999888
Q ss_pred CCCCHhhHHHHHHHHHHcCC
Q 048235 88 QKPSATTYGLVMEVMLACGK 107 (455)
Q Consensus 88 ~~p~~~~~~~l~~~~~~~~~ 107 (455)
.+++..-|..++.++.+...
T Consensus 111 ~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 111 IEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred CCCCHHHHHHHHHHHHcCCC
Confidence 89999999999988766533
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.28 E-value=6.3 Score=21.31 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048235 232 TCNIMVKAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 232 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
+|..+...|...|++++|...|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667777888888888888888887764
No 338
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.75 E-value=14 Score=33.10 Aligned_cols=90 Identities=18% Similarity=0.105 Sum_probs=55.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 048235 133 VNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI 212 (455)
Q Consensus 133 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 212 (455)
..-|.+.|.+++|+..|..-.... +-++.++..-..+|.+..++..|..=-......+ ..-...|..-+.+-...|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 456788999999999998876653 2267777778888999888887765544444332 01123344334444444555
Q ss_pred HHHHHHHHHHHh
Q 048235 213 QNAAYIFNQMKN 224 (455)
Q Consensus 213 ~~a~~~~~~~~~ 224 (455)
.+|.+-++...+
T Consensus 182 ~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 182 MEAKKDCETVLA 193 (536)
T ss_pred HHHHHhHHHHHh
Confidence 555555555444
No 339
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.20 E-value=4.5 Score=21.61 Aligned_cols=26 Identities=23% Similarity=0.539 Sum_probs=19.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 235 IMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 235 ~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
.+..++.+.|++++|.+.|+++++.-
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 45566777788888888888887753
No 340
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.14 E-value=15 Score=26.39 Aligned_cols=51 Identities=18% Similarity=0.105 Sum_probs=26.8
Q ss_pred hhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHhcccccc
Q 048235 358 LENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTT 415 (455)
Q Consensus 358 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p 415 (455)
..+|+|++|..+.+..+ .| +...|.++.. ...+-.+.......+...+.+|
T Consensus 50 mNrG~Yq~Al~l~~~~~-~p----dlepw~ALce--~rlGl~s~l~~rl~rla~sg~p 100 (115)
T TIGR02508 50 MNRGDYQSALQLGNKLC-YP----DLEPWLALCE--WRLGLGSALESRLNRLAASGDP 100 (115)
T ss_pred HccchHHHHHHhcCCCC-Cc----hHHHHHHHHH--HhhccHHHHHHHHHHHHhCCCH
Confidence 46677777777666654 22 2256666665 3444444444444444444444
No 341
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.08 E-value=36 Score=29.76 Aligned_cols=87 Identities=10% Similarity=-0.022 Sum_probs=49.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----
Q 048235 133 VNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD---- 208 (455)
Q Consensus 133 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---- 208 (455)
|.+++..++|.+++...-+--+.--+..+.....-|-.|.+.+.+..+.++-....+.--.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5667777777777665544433211222233344455667777777777776665554323334446666555543
Q ss_pred -cCCHHHHHHHH
Q 048235 209 -SGNIQNAAYIF 219 (455)
Q Consensus 209 -~~~~~~a~~~~ 219 (455)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 47777777666
No 342
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.03 E-value=55 Score=32.08 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHH
Q 048235 126 ALAYKVLVNTLWREGKTDEAVSAVED 151 (455)
Q Consensus 126 ~~~~~~li~~~~~~g~~~~a~~~~~~ 151 (455)
..-|..|..+....|++..|.+.|..
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHh
Confidence 34445555555555555555544443
No 343
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.65 E-value=40 Score=28.00 Aligned_cols=75 Identities=16% Similarity=0.109 Sum_probs=58.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHHhcCCHHHHH
Q 048235 141 KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV---ANKPLVVSYTGLIQACLDSGNIQNAA 216 (455)
Q Consensus 141 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~~~~~~a~ 216 (455)
.-+.|.+.|-++...+..-++.....|...|. ..+.+++..++....+. +-.+|+..+.+|+..+.+.++++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34778888888888877667776666666665 68889999888887654 33678899999999999999988874
No 344
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=77.56 E-value=84 Score=31.70 Aligned_cols=319 Identities=11% Similarity=0.116 Sum_probs=165.9
Q ss_pred HhhHHHHHHHHH-hcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCH-----hHHHHHHHHHHhcCCHHHHHHHH
Q 048235 7 TVAYRSIAVTLG-QAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDI-----VVYNAVLNACVRRKQWEGAFWVL 80 (455)
Q Consensus 7 ~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~ 80 (455)
+.++-.+...+. ...+++.|...+++..... .+++. ..-..++..+.+.+... |....
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~---------------~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l 122 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLC---------------ERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNL 122 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---------------cccchHHHHHHHHHHHHHHHHhcCHHH-HHHHH
Confidence 334445555555 6688999999999876421 11221 22334556666666655 88888
Q ss_pred HHHHHc----CCCCCHhhHHHH-HHHHHHcCChhHHHHHHHHHHhc----CCCCHHHHHHHHHHHH--hcCChHHHHHHH
Q 048235 81 QQLKQQ----GQKPSATTYGLV-MEVMLACGKYNLVYEFFRKVQKS----YIPNALAYKVLVNTLW--REGKTDEAVSAV 149 (455)
Q Consensus 81 ~~m~~~----~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~li~~~~--~~g~~~~a~~~~ 149 (455)
++..+. +..+-...|..+ +..+...++...|.+.++.+... +.+...++-.++.+.. ..+..+++.+.+
T Consensus 123 ~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l 202 (608)
T PF10345_consen 123 DKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELL 202 (608)
T ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence 887663 222233334433 33333347999999999887643 2244455555555544 456677788888
Q ss_pred HHHHHCCC---------CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHH-------cC-CC-----------------
Q 048235 150 EDMERRGI---------VGSAALYYDLARCLC--SAGKCEEALMQMDKICK-------VA-NK----------------- 193 (455)
Q Consensus 150 ~~m~~~~~---------~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~-------~~-~~----------------- 193 (455)
+++..... .|-..+|..+++.++ ..|+++.+...++++.+ .. .+
T Consensus 203 ~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~ 282 (608)
T PF10345_consen 203 QRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSS 282 (608)
T ss_pred HHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccc
Confidence 77744221 233456666666554 46777677666555421 10 00
Q ss_pred -----CcHH---------HHHHHHH--HHHhcCCHHHHHHHHHHHHhc----C-----CC--------CHHHHHHHHHH-
Q 048235 194 -----PLVV---------SYTGLIQ--ACLDSGNIQNAAYIFNQMKNF----C-----SP--------NLVTCNIMVKA- 239 (455)
Q Consensus 194 -----~~~~---------~~~~li~--~~~~~~~~~~a~~~~~~~~~~----~-----~~--------~~~~~~~li~~- 239 (455)
+... ...-++. ..+..+..++|.+++++..+. . .+ +...|...+..
T Consensus 283 ~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~ 362 (608)
T PF10345_consen 283 NSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCY 362 (608)
T ss_pred cCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHH
Confidence 0110 1111111 223445444666665554221 1 11 11223222222
Q ss_pred --------HHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHH--HHHHcCCHHHHHHHHH--------
Q 048235 240 --------YLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD--ACAAEKRWDDLELVYK-------- 301 (455)
Q Consensus 240 --------~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~--~~~~~~~~~~a~~~~~-------- 301 (455)
.+-.+++..|...++.|.+...+.. .........+..++. .+...|+.+.|...|.
T Consensus 363 ~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~------~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~ 436 (608)
T PF10345_consen 363 LLFYQIWCNFIRGDWSKATQELEFMRQLCQRSP------SKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCE 436 (608)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCc------cchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhh
Confidence 2347889999999999887531000 000011223333333 3445699999999998
Q ss_pred HHHHcCCCCCHHHHHHH--HHHHHhcC--ChHH--HHHHHHHHhhcCCCCCh
Q 048235 302 RMLHHGLHFNAKRHLRM--ILDASRAG--KVEL--LEITWEHLARADRITPP 347 (455)
Q Consensus 302 ~m~~~~~~p~~~~~~~l--l~~~~~~g--~~~~--a~~~~~~~~~~~~~~~~ 347 (455)
.....+...+..++..+ +..+...+ ...+ ..++++.+......+++
T Consensus 437 ~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~ 488 (608)
T PF10345_consen 437 AANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPN 488 (608)
T ss_pred hhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCcc
Confidence 44445555444433321 11122222 2233 77888887665544544
No 345
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=77.27 E-value=82 Score=31.43 Aligned_cols=27 Identities=7% Similarity=0.002 Sum_probs=19.4
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhh
Q 048235 7 TVAYRSIAVTLGQAGHIKELFDVIDSMR 34 (455)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~A~~~~~~~~ 34 (455)
..-|+ .+..+.-.|.++.|.+++....
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 44566 6888888999999999995544
No 346
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.03 E-value=82 Score=31.30 Aligned_cols=150 Identities=15% Similarity=0.098 Sum_probs=91.1
Q ss_pred HHhcCCHHHHHHHHHHHHH-------cCCCCCHhhHHHHHHHHHHcC-----ChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048235 67 CVRRKQWEGAFWVLQQLKQ-------QGQKPSATTYGLVMEVMLACG-----KYNLVYEFFRKVQKSYIPNALAYKVLVN 134 (455)
Q Consensus 67 ~~~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~li~ 134 (455)
+....+++.|+..|....+ .| ......-+..+|.+.. +.+.|..++.+....+.|+....-..+.
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLY 335 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 3355778899988888876 44 2334555566666543 5566888888888777666665544443
Q ss_pred HHHh-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 048235 135 TLWR-EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC----SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS 209 (455)
Q Consensus 135 ~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 209 (455)
.... ..+...|.++|......|..+ .+..+..+|. ...+...|...+.+..+.| .|....-...+..+..
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~- 410 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHIL---AIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV- 410 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-
Confidence 3333 346788899998888887332 2222333332 2356888888888888877 3332222333344444
Q ss_pred CCHHHHHHHHHHHHh
Q 048235 210 GNIQNAAYIFNQMKN 224 (455)
Q Consensus 210 ~~~~~a~~~~~~~~~ 224 (455)
+.++.+.-.+..+.+
T Consensus 411 ~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 411 GRYDTALALYLYLAE 425 (552)
T ss_pred ccccHHHHHHHHHHH
Confidence 666666666655544
No 347
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.91 E-value=41 Score=27.85 Aligned_cols=89 Identities=15% Similarity=0.147 Sum_probs=49.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChh
Q 048235 172 CSAGKCEEALMQMDKICKVANKPL----VVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFE 247 (455)
Q Consensus 172 ~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 247 (455)
.+.|++++|..-|.+....-.... ...|..-..++.+.+.++.|+.-.....+..+........-..+|.+...++
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~e 185 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYE 185 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHH
Confidence 456666666666666555432211 2233334445556666666666555554433333333333345677777788
Q ss_pred HHHHHHHHHHhcc
Q 048235 248 EAMKLFQEMAEDS 260 (455)
Q Consensus 248 ~a~~~~~~m~~~~ 260 (455)
+|+.=|+++.+..
T Consensus 186 ealeDyKki~E~d 198 (271)
T KOG4234|consen 186 EALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888877743
No 348
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.62 E-value=7.2 Score=23.14 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=12.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 048235 132 LVNTLWREGKTDEAVSAVEDMER 154 (455)
Q Consensus 132 li~~~~~~g~~~~a~~~~~~m~~ 154 (455)
|..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555554
No 349
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.43 E-value=4.1 Score=20.75 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 048235 9 AYRSIAVTLGQAGHIKELFDVID 31 (455)
Q Consensus 9 ~~~~li~~~~~~g~~~~A~~~~~ 31 (455)
+...+...+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567888999999999999886
No 350
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.31 E-value=45 Score=27.49 Aligned_cols=89 Identities=10% Similarity=-0.027 Sum_probs=47.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 048235 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF-----NTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311 (455)
Q Consensus 237 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 311 (455)
...+...+++++|..-++..+.. |....+ -.|.+.....|.+|+|...++.....++.+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---------------t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~- 159 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---------------TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA- 159 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---------------chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH-
Confidence 34455666666666666665542 111112 223344556666666666666655543321
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 048235 312 AKRHLRMILDASRAGKVELLEITWEHLARAD 342 (455)
Q Consensus 312 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 342 (455)
.....--+.+...|+.++|..-|+..+...
T Consensus 160 -~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 160 -IVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred -HHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 112222334566677777777777666665
No 351
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=75.02 E-value=68 Score=29.38 Aligned_cols=53 Identities=21% Similarity=0.347 Sum_probs=30.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 048235 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120 (455)
Q Consensus 64 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 120 (455)
..+.-+.|+|+...+........ .++...+..+.. .+.++.+.+....+....
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~--l~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLA--LRQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHH--HhCccHHHHHHHHHHHHH
Confidence 45566778887744444443322 234444554443 277888877777776644
No 352
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.48 E-value=1e+02 Score=31.28 Aligned_cols=101 Identities=10% Similarity=0.063 Sum_probs=73.2
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048235 14 AVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEP---DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKP 90 (455)
Q Consensus 14 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 90 (455)
|.-+.+.+.+++|++..+.... ..| -...+-..|..+.-.|++++|-...-.|...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~-----------------~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn---- 421 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG-----------------NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN---- 421 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC-----------------CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----
Confidence 4557788899999998887753 234 4567888999999999999999998888865
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHh
Q 048235 91 SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWR 138 (455)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~ 138 (455)
+..-|...+..+...++......+ +....+ .+..+|..++..+..
T Consensus 422 ~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 422 NAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 666777777767776666544332 333333 467788888887776
No 353
>PRK09687 putative lyase; Provisional
Probab=74.20 E-value=63 Score=28.68 Aligned_cols=220 Identities=14% Similarity=0.030 Sum_probs=107.6
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHCCCCCCHHHHHH
Q 048235 91 SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKT----DEAVSAVEDMERRGIVGSAALYYD 166 (455)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~~~~~~~~~~~~ 166 (455)
|.......+.++...|..+ +...+..+... ++...-...+.++++.|+. +++...+..+...+ ++...-..
T Consensus 36 d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~--~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D--~d~~VR~~ 110 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQD-VFRLAIELCSS--KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED--KSACVRAS 110 (280)
T ss_pred CHHHHHHHHHHHHhcCcch-HHHHHHHHHhC--CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC--CCHHHHHH
Confidence 4445555555555555422 22222233222 3555555666666666653 34555555553332 33333333
Q ss_pred HHHHHHhcCC-----HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048235 167 LARCLCSAGK-----CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241 (455)
Q Consensus 167 l~~~~~~~g~-----~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 241 (455)
.+.++...+. ...+...+..... .++..+-...+.++++.++.+ +...+-.+.. .++...-...+.++.
T Consensus 111 A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~~-ai~~L~~~L~--d~~~~VR~~A~~aLg 184 (280)
T PRK09687 111 AINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDEA-AIPLLINLLK--DPNGDVRNWAAFALN 184 (280)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCHH-HHHHHHHHhc--CCCHHHHHHHHHHHh
Confidence 3333333321 1122222222222 234555556666666666643 4444444333 244444445555555
Q ss_pred hcC-ChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048235 242 EHG-LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMIL 320 (455)
Q Consensus 242 ~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 320 (455)
..+ ....+...+..+... ++...-...+.++.+.++ ..|...+-...+.+. .....+.
T Consensus 185 ~~~~~~~~~~~~L~~~L~D---------------~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ 243 (280)
T PRK09687 185 SNKYDNPDIREAFVAMLQD---------------KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIE 243 (280)
T ss_pred cCCCCCHHHHHHHHHHhcC---------------CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHH
Confidence 543 234556666665543 455666666777777776 345555545444322 2335666
Q ss_pred HHHhcCChHHHHHHHHHHhhcCC
Q 048235 321 DASRAGKVELLEITWEHLARADR 343 (455)
Q Consensus 321 ~~~~~g~~~~a~~~~~~~~~~~~ 343 (455)
++...|.. +|...+..+.+..+
T Consensus 244 ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 244 AAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHhcCCH-hHHHHHHHHHhhCC
Confidence 67777764 57777777665443
No 354
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.12 E-value=86 Score=30.18 Aligned_cols=180 Identities=11% Similarity=0.068 Sum_probs=121.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 048235 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGL 202 (455)
Q Consensus 123 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 202 (455)
+.|....-+++..+..+-.+.-...+..+|..-| -+...|..++++|..+ ..++-..+++++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 3566777788888888888888888889998876 4566788899999888 677788888888887665 55555566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCc
Q 048235 203 IQACLDSGNIQNAAYIFNQMKNFCSP------NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276 (455)
Q Consensus 203 i~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~ 276 (455)
...|-+ ++.+.+...|..+...+-| -...|.-++..- ..+.+..+.+...+.... +...-
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~l-----------g~~~~ 204 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKL-----------GEGRG 204 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhh-----------ccchH
Confidence 666655 7888888888887654222 122455444321 356667777777665543 13334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048235 277 IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILD 321 (455)
Q Consensus 277 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 321 (455)
...+.-+-.-|....++.+|++++..+.+.+-+ |...-..++..
T Consensus 205 ~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 205 SVLMQDVYKKYSENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 555666667788888899999999877774322 44444444443
No 355
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.66 E-value=51 Score=28.89 Aligned_cols=88 Identities=16% Similarity=0.053 Sum_probs=62.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHh--
Q 048235 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLE-- 242 (455)
Q Consensus 166 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~-- 242 (455)
.=|++++..+++.+++...-.--+.--+....+...-|-.|.+.+++..+.++-..-... ...+...|..++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 357888899999998866544433322233566667777899999999999888876543 33444558777776654
Q ss_pred ---cCChhHHHHHH
Q 048235 243 ---HGLFEEAMKLF 253 (455)
Q Consensus 243 ---~~~~~~a~~~~ 253 (455)
.|.+++|.++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 69999999877
No 356
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.46 E-value=11 Score=22.41 Aligned_cols=21 Identities=14% Similarity=0.003 Sum_probs=10.2
Q ss_pred HHHHHhcCChHHHHHHHHHHh
Q 048235 319 ILDASRAGKVELLEITWEHLA 339 (455)
Q Consensus 319 l~~~~~~g~~~~a~~~~~~~~ 339 (455)
..+|...|+.+.|.++++++.
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 344444455555555554444
No 357
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=73.21 E-value=11 Score=24.44 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 048235 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341 (455)
Q Consensus 292 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 341 (455)
.++...++++.++. ..-|..-...+|.+|...|++++|.++++.+.+.
T Consensus 5 ~~~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 5 QLEELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp -HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34556666666655 2235556677888999999999999988887643
No 358
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=72.57 E-value=59 Score=27.55 Aligned_cols=99 Identities=11% Similarity=0.038 Sum_probs=64.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHH--HHHHHHHHhcCChHHHHHHHHHHhhcCCCCCh
Q 048235 273 VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHF---NAKRH--LRMILDASRAGKVELLEITWEHLARADRITPP 347 (455)
Q Consensus 273 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 347 (455)
+.+...-+|.|+--|.-...+.+|.+.|.. +.|+.| |..++ ..-|......|+++.|.+..+.+...-.....
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 456666777777766666666666666653 345555 33333 33566679999999999998887432222221
Q ss_pred ----HhHHHHHHHHhhccchHHHHHHhhhc
Q 048235 348 ----ALIKERFCNRLENKDYGSAISCLVSH 373 (455)
Q Consensus 348 ----~~~~~~~~~~~~~~~~~~A~~~~~~~ 373 (455)
.+....++.++|.|..++|+++++.-
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 23344556677999999999988853
No 359
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.63 E-value=46 Score=25.98 Aligned_cols=109 Identities=8% Similarity=0.160 Sum_probs=63.1
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh--hHHHHHHHHHHcCChhHHHHHHHHHHhc------CCC
Q 048235 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSAT--TYGLVMEVMLACGKYNLVYEFFRKVQKS------YIP 124 (455)
Q Consensus 53 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~ 124 (455)
+.++..+|...+.. ....|.+.+..++.. ..+.++.-....+++.....+++.+... +..
T Consensus 10 ~~~nL~~w~~fi~~------------~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~ 77 (145)
T PF13762_consen 10 VLANLEVWKTFINS------------HLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWL 77 (145)
T ss_pred hhhhHHHHHHHHHH------------HHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhc
Confidence 34566666665543 334455555554432 3455666556667777777777666321 123
Q ss_pred CHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048235 125 NALAYKVLVNTLWREGK-TDEAVSAVEDMERRGIVGSAALYYDLARCLCS 173 (455)
Q Consensus 125 ~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 173 (455)
+...|..++.+..+..- ---+..+|.-|.+.+.++++.-|..++.++.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 55667777777655444 33455666666666667777777777766544
No 360
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=70.03 E-value=33 Score=23.95 Aligned_cols=64 Identities=11% Similarity=0.074 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHH
Q 048235 77 FWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEA 145 (455)
Q Consensus 77 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 145 (455)
.++++.+.+.|+- +..-...+-.+-...|+.+.|.+++..+. + ....|..+++++...|+-+.|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r---g~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-Q---KEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-c---CCcHHHHHHHHHHHcCchhhh
Confidence 3455555555543 22222322222223455566666665555 3 234455555555555554443
No 361
>PRK11619 lytic murein transglycosylase; Provisional
Probab=69.78 E-value=1.3e+02 Score=30.49 Aligned_cols=248 Identities=13% Similarity=0.061 Sum_probs=122.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChH
Q 048235 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTD 143 (455)
Q Consensus 64 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 143 (455)
+..+.+.+++...+..+. ..+.+...-+....+....|+.+.|......+-..+......++.++..+.+.|.+.
T Consensus 106 l~~La~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 106 VNELARREDWRGLLAFSP-----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HHHHHHccCHHHHHHhcC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCC
Confidence 334445555655554221 123455556777777888888777777666665555566777777777777666554
Q ss_pred HHH--HHHHHHHHCCCCCCHHHHHHHHHHHH------------hcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH--H
Q 048235 144 EAV--SAVEDMERRGIVGSAALYYDLARCLC------------SAGKCEEALMQMDKICKVANKPLVVSYTGLIQAC--L 207 (455)
Q Consensus 144 ~a~--~~~~~m~~~~~~~~~~~~~~l~~~~~------------~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--~ 207 (455)
... +=++.+...| +...-..+...+. -..+...+...+. .+.++...-..++.++ .
T Consensus 181 ~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~l~Rl 252 (644)
T PRK11619 181 PLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVAFASV 252 (644)
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHHHHHH
Confidence 432 2222222222 1111111221110 0011111111111 1112221111112222 2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHH
Q 048235 208 DSGNIQNAAYIFNQMKNFCSPN----LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTM 283 (455)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~l 283 (455)
...+.+.|...+..+.....-+ ...+..+.......+..++|...+....... .+......-
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--------------~~~~~~e~r 318 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--------------QSTSLLERR 318 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--------------CCcHHHHHH
Confidence 3456678888888764432222 1223333333333332556666666544321 244445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048235 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLA 339 (455)
Q Consensus 284 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 339 (455)
+......++++.+...+..|....-. ...-..=+.+++...|+.++|...|+.+.
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 55555788888888888887552222 22222234555566788888888888874
No 362
>PRK10941 hypothetical protein; Provisional
Probab=69.72 E-value=79 Score=27.87 Aligned_cols=69 Identities=10% Similarity=-0.062 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHh
Q 048235 279 TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA-KRHLRMILDASRAGKVELLEITWEHLARADRITPPAL 349 (455)
Q Consensus 279 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 349 (455)
..+.+-.+|.+.++++.|..+.+.+.. +.|+. .-+.---..|.+.|.+..|..=++..++.++..|++.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 445666788999999999999999998 44553 3344344447899999999999999999998888753
No 363
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=69.38 E-value=20 Score=34.75 Aligned_cols=103 Identities=16% Similarity=0.074 Sum_probs=70.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 048235 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217 (455)
Q Consensus 138 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 217 (455)
-.|+...|...+.........-.......|.+...+.|-..+|-.++.+..... ...+.++..+.+++....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 358888888877665443211112223446666667777778888877766654 3355677788888999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHH
Q 048235 218 IFNQMKNFCSPNLVTCNIMVKAYL 241 (455)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~li~~~~ 241 (455)
-|++.....+.+...-+.|...-|
T Consensus 698 ~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHH
Confidence 999887766777777776665544
No 364
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.31 E-value=67 Score=26.54 Aligned_cols=90 Identities=17% Similarity=0.087 Sum_probs=44.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 048235 134 NTLWREGKTDEAVSAVEDMERRGIVGS--AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211 (455)
Q Consensus 134 ~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 211 (455)
..+...++++.|..-++.........+ ..+--.|.+.....|.+|+|+.+++.....+.. ......-.+.+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCc
Confidence 345556666666666655543211000 111112444455566666666666555544322 2223334555666666
Q ss_pred HHHHHHHHHHHHhc
Q 048235 212 IQNAAYIFNQMKNF 225 (455)
Q Consensus 212 ~~~a~~~~~~~~~~ 225 (455)
-++|..-|+...+.
T Consensus 175 k~~Ar~ay~kAl~~ 188 (207)
T COG2976 175 KQEARAAYEKALES 188 (207)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666666665543
No 365
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.17 E-value=34 Score=28.32 Aligned_cols=55 Identities=13% Similarity=-0.092 Sum_probs=41.6
Q ss_pred HcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 048235 289 AEKRWDDLELVYKRMLH-HGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADR 343 (455)
Q Consensus 289 ~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 343 (455)
...+.+......+.+.+ ....|++..|..++..+...|+.++|.+..+++....+
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45555545444444444 34678999999999999999999999999999987665
No 366
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=67.46 E-value=1.4e+02 Score=30.05 Aligned_cols=42 Identities=12% Similarity=0.278 Sum_probs=23.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 048235 98 VMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWRE 139 (455)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 139 (455)
+|--|.|+|+++.|.++..............+-..+..|...
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 444566777777777776555444444445555566665553
No 367
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=67.46 E-value=1.4e+02 Score=30.04 Aligned_cols=193 Identities=14% Similarity=0.180 Sum_probs=116.9
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCC--HhhHHHHHHHHH-HcCChhHHHHHHHHHHhcCC-CCH--
Q 048235 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLK-QQGQKPS--ATTYGLVMEVML-ACGKYNLVYEFFRKVQKSYI-PNA-- 126 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~p~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~-~~~-- 126 (455)
+.+...|..||.. |++.++-+. +..+.|. ..++-.+...+. ...+++.|+..+++...... ++.
T Consensus 27 ~~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 27 EEQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hhhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 5677788888864 455566665 3334443 344555555555 77889999999997754322 111
Q ss_pred ---HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcC---CCCc
Q 048235 127 ---LAYKVLVNTLWREGKTDEAVSAVEDMERR----GIVGSAALYYDL-ARCLCSAGKCEEALMQMDKICKVA---NKPL 195 (455)
Q Consensus 127 ---~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~m~~~~---~~~~ 195 (455)
..-..++..+.+.+... |...+++..+. +..+....|..+ +..+...++...|.+.++.+...- ..|-
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 22335567777776666 88888886653 333455555555 333334479999999998876542 2344
Q ss_pred HHHHHHHHHHHH--hcCCHHHHHHHHHHHHhc----------CCCCHHHHHHHHHHHH--hcCChhHHHHHHHHH
Q 048235 196 VVSYTGLIQACL--DSGNIQNAAYIFNQMKNF----------CSPNLVTCNIMVKAYL--EHGLFEEAMKLFQEM 256 (455)
Q Consensus 196 ~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~----------~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m 256 (455)
..++..++.+.. ..+..+++.+..+.+... ..|-..+|..++..++ ..|+++.+...++++
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555544 345566777777666321 2345667777776655 567766665555444
No 368
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=67.42 E-value=80 Score=27.08 Aligned_cols=83 Identities=13% Similarity=0.100 Sum_probs=46.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 048235 174 AGKCEEALMQMDKICKVANKPLV-VSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKL 252 (455)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 252 (455)
..+++.|...+.+... +.|+. .-|+.=+..+.+..+++.+..--....+..+..+...-.+..+......+++|+..
T Consensus 23 ~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 4455666664444443 33444 33455555666667777666655555553333344444555566666777777777
Q ss_pred HHHHHh
Q 048235 253 FQEMAE 258 (455)
Q Consensus 253 ~~~m~~ 258 (455)
+.+...
T Consensus 101 Lqra~s 106 (284)
T KOG4642|consen 101 LQRAYS 106 (284)
T ss_pred HHHHHH
Confidence 777643
No 369
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.23 E-value=4.9 Score=35.90 Aligned_cols=83 Identities=11% Similarity=0.029 Sum_probs=59.5
Q ss_pred HHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHhccccccccCCCchhHHHHHHhHHhh
Q 048235 355 CNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDF 434 (455)
Q Consensus 355 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 434 (455)
...+..|.+++|++.+......++. +...+..-.+.+....+-..++.-+...+. ++|+....|-+-+......|+|
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~--~a~l~~kr~sv~lkl~kp~~airD~d~A~e-in~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPP--LAILYAKRASVFLKLKKPNAAIRDCDFAIE-INPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCc--hhhhcccccceeeeccCCchhhhhhhhhhc-cCcccccccchhhHHHHHhhch
Confidence 3345778888888888766543333 335555555555566666677777766666 9999999999999999999999
Q ss_pred hhccCC
Q 048235 435 LRTQSP 440 (455)
Q Consensus 435 ~~a~~~ 440 (455)
.++...
T Consensus 199 e~aa~d 204 (377)
T KOG1308|consen 199 EEAAHD 204 (377)
T ss_pred HHHHHH
Confidence 877665
No 370
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.23 E-value=25 Score=23.97 Aligned_cols=51 Identities=12% Similarity=0.201 Sum_probs=38.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-c-HHHHHHHHHHHHHcCCHHHHHHHH
Q 048235 237 VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-D-IYTFNTMLDACAAEKRWDDLELVY 300 (455)
Q Consensus 237 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~-~~~~~~li~~~~~~~~~~~a~~~~ 300 (455)
+..| ...+.++|+..|+..++.- ..| + -.++..++.+|+..|++.+++++-
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~------------~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKI------------TDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhc------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 6778899999999998865 222 2 256778889999999988877664
No 371
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.77 E-value=1.4e+02 Score=31.96 Aligned_cols=148 Identities=17% Similarity=0.124 Sum_probs=81.5
Q ss_pred HHHhcCCHHHHHHHHHHHHh------------------------c---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHH
Q 048235 205 ACLDSGNIQNAAYIFNQMKN------------------------F---CSPN--LVTCNIMVKAYLEHGLFEEAMKLFQE 255 (455)
Q Consensus 205 ~~~~~~~~~~a~~~~~~~~~------------------------~---~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~ 255 (455)
+|...|+..+|...|.+... + .++. ..-|..+++.+-+.+-.+.+.++-..
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 35567778888887776543 1 1111 23366677777788888888887777
Q ss_pred HHhcccccchhhccCCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHH
Q 048235 256 MAEDSNHINREYDKKGLVIPD-IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA----KRHLRMILDASRAGKVEL 330 (455)
Q Consensus 256 m~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~ 330 (455)
+++.-. .-.|+ ..+++.+.+.....|.+.+|.+.+-+ .||. .....++..+..+|.++.
T Consensus 1009 AIe~l~----------dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRqlvivLfecg~l~~ 1072 (1480)
T KOG4521|consen 1009 AIENLP----------DDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQLVIVLFECGELEA 1072 (1480)
T ss_pred HHHhCC----------CcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHhccchHH
Confidence 766420 01122 34566777777777777777655432 2343 244556666677776554
Q ss_pred H------------HH-HHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHH
Q 048235 331 L------------EI-TWEHLARADRITPPALIKERFCNRLENKDYGSAIS 368 (455)
Q Consensus 331 a------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 368 (455)
- .. +++...+..+.....-+..+++-.+..+++..|-.
T Consensus 1073 L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaat 1123 (1480)
T KOG4521|consen 1073 LATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAAT 1123 (1480)
T ss_pred HhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHH
Confidence 2 22 33333333322222223344444456666666654
No 372
>PRK11619 lytic murein transglycosylase; Provisional
Probab=65.84 E-value=1.6e+02 Score=29.94 Aligned_cols=332 Identities=12% Similarity=0.070 Sum_probs=158.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048235 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLW 137 (455)
Q Consensus 58 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 137 (455)
..|.....+ .+.|++..+.++...+...-+ ..-..|..+.... .....++...++++-.. .+.....-...+..+.
T Consensus 35 ~~f~~A~~a-~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~-~P~~~~Lr~~~l~~La 110 (644)
T PRK11619 35 QRYQQIKQA-WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRANPT-LPPARSLQSRFVNELA 110 (644)
T ss_pred HHHHHHHHH-HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHCCC-CchHHHHHHHHHHHHH
Confidence 344444433 467778887777776643222 1222233222211 12234444444333321 1223333444556667
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 048235 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217 (455)
Q Consensus 138 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 217 (455)
+.+++......+. . .+.+...-.....+....|+.++|....+.+-..|.. ....++.++..+.+.|.+....
T Consensus 111 ~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d- 183 (644)
T PRK11619 111 RREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLA- 183 (644)
T ss_pred HccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHH-
Confidence 7788877766321 1 2345555566778888899988888888887777643 4677888888888776654432
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHH--HcCCHH
Q 048235 218 IFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA--AEKRWD 294 (455)
Q Consensus 218 ~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~--~~~~~~ 294 (455)
++.++... ...+...-..+...+. .+.....+.+..+.... ..-......+.|+...-..++.++. ...+.+
T Consensus 184 ~w~R~~~al~~~~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p---~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~ 258 (644)
T PRK11619 184 YLERIRLAMKAGNTGLVTYLAKQLP--ADYQTIASALIKLQNDP---NTVETFARTTGPTDFTRQMAAVAFASVARQDAE 258 (644)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcC--hhHHHHHHHHHHHHHCH---HHHHHHhhccCCChhhHHHHHHHHHHHHHhCHH
Confidence 33333221 1233332222322220 11111111111111110 0000000001223211111222222 345678
Q ss_pred HHHHHHHHHHH-cCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhh
Q 048235 295 DLELVYKRMLH-HGLHFNAK--RHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLV 371 (455)
Q Consensus 295 ~a~~~~~~m~~-~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 371 (455)
.|..++..... .++.++.. ....+.......+...++...++...... ..+.+....+...++.++++.+...+.
T Consensus 259 ~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~ 336 (644)
T PRK11619 259 NARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLA 336 (644)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHH
Confidence 89999988755 44443332 22333333333332566666666544222 233344445555568888888888888
Q ss_pred hcCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHh
Q 048235 372 SHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEA 409 (455)
Q Consensus 372 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 409 (455)
.++........-..|..-.. ...|+.+++...+.+.
T Consensus 337 ~L~~~~~~~~rw~YW~aRa~--~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 337 RLPMEAKEKDEWRYWQADLL--LEQGRKAEAEEILRQL 372 (644)
T ss_pred hcCHhhccCHhhHHHHHHHH--HHcCCHHHHHHHHHHH
Confidence 87653332222355544332 2345555555555543
No 373
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=64.80 E-value=13 Score=18.75 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048235 232 TCNIMVKAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 232 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
.|..+...+...++++.|...|+..++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4566777778888888888888877653
No 374
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=63.63 E-value=31 Score=20.91 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=25.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048235 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVME 100 (455)
Q Consensus 66 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 100 (455)
...+.|-..++..++++|.+.|+..+...+..+++
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34466777788888888888887777777776654
No 375
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.39 E-value=30 Score=23.64 Aligned_cols=46 Identities=9% Similarity=-0.044 Sum_probs=27.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHHhcCChHHHHHH
Q 048235 289 AEKRWDDLELVYKRMLHHGLHF-N-AKRHLRMILDASRAGKVELLEIT 334 (455)
Q Consensus 289 ~~~~~~~a~~~~~~m~~~~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~ 334 (455)
..++.++|+..|....+.-..+ + ..++..++.++...|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777766632222 2 23556666677777777766553
No 376
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=63.22 E-value=47 Score=32.37 Aligned_cols=103 Identities=13% Similarity=0.054 Sum_probs=76.1
Q ss_pred HHcCChhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048235 103 LACGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEAL 181 (455)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 181 (455)
...|+...|...+.......+ ...+....|...+.+.|....|..++.+..... ...+.++..+.+++....+.+.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 346788888888877655444 333445566777777788889999998887765 455677888999999999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHH
Q 048235 182 MQMDKICKVANKPLVVSYTGLIQACL 207 (455)
Q Consensus 182 ~~~~~m~~~~~~~~~~~~~~li~~~~ 207 (455)
+.|+...+...+ +...-+.|...-|
T Consensus 697 ~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 999998887644 5566666655444
No 377
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=63.19 E-value=44 Score=26.16 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=31.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 048235 148 AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG 210 (455)
Q Consensus 148 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 210 (455)
+...+.+.|.+++.. -..++..+...++.-.|.++++++.+.++..+..|.-..++.+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334445556655543 23355555555555666666666666655554444333334444433
No 378
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=63.11 E-value=1.2e+02 Score=27.59 Aligned_cols=99 Identities=7% Similarity=-0.070 Sum_probs=63.5
Q ss_pred CCCHhHHHHHHHHHHhcCC------------HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 048235 54 EPDIVVYNAVLNACVRRKQ------------WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~~~~------------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 121 (455)
+-|+.+|-.++..--..-. .+.-+.++++..+.+. -+......+++.+.+..+.+...+-++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 6678899888865332211 3455667777777643 35666667777777777777777778887777
Q ss_pred CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHH
Q 048235 122 YIPNALAYKVLVNTLWR---EGKTDEAVSAVEDME 153 (455)
Q Consensus 122 ~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~ 153 (455)
.+.+...|...+..... .-.++....+|.+..
T Consensus 95 ~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 95 NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 66677777777665443 233555555555443
No 379
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=62.65 E-value=58 Score=23.83 Aligned_cols=81 Identities=16% Similarity=0.128 Sum_probs=49.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 048235 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253 (455)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 253 (455)
....++|..+.+.+...+.. ...+--.-+..+.+.|+++.| +..-.....||...|-+| +-.+.|..+++...+
T Consensus 19 ~HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL--~a~klGL~~~~e~~l 92 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAAL--CAWKLGLASALESRL 92 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHH--HHHHCT-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHH--HHHhhccHHHHHHHH
Confidence 34577888888887777642 334444445567788888888 222233355888877766 346788888888888
Q ss_pred HHHHhcc
Q 048235 254 QEMAEDS 260 (455)
Q Consensus 254 ~~m~~~~ 260 (455)
.++...|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 8877765
No 380
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.34 E-value=53 Score=27.11 Aligned_cols=52 Identities=12% Similarity=-0.051 Sum_probs=32.0
Q ss_pred hcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048235 208 DSGNIQNAAYIFNQMKNF--CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
...+.+......+...+. ..|+..+|..++.++...|+.++|.++..++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344444444444333332 4577777777777777777777777777777663
No 381
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=62.32 E-value=50 Score=25.88 Aligned_cols=63 Identities=16% Similarity=0.047 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhcc
Q 048235 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENK 361 (455)
Q Consensus 298 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (455)
.+.+.+.+.|++++. .-..++..+...++.-.|.++++.+.+.++....+++++.+..+.+.|
T Consensus 7 ~~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 445566678888776 355677777878788899999999998876665555665665554444
No 382
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=61.31 E-value=1.1e+02 Score=30.63 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=0.0
Q ss_pred cCChhHHHHHHHHHHhcc
Q 048235 243 HGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 243 ~~~~~~a~~~~~~m~~~~ 260 (455)
.+++.+|.+.+-.+...+
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~ 525 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSP 525 (566)
T ss_dssp ------------------
T ss_pred hhhHHHHHHHHHHHHCCC
Confidence 467777777777777665
No 383
>PRK10941 hypothetical protein; Provisional
Probab=60.98 E-value=1.2e+02 Score=26.79 Aligned_cols=115 Identities=6% Similarity=-0.046 Sum_probs=77.6
Q ss_pred ccccCCCCCCCHhHHHHHHHHHHhcCC--------HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHH
Q 048235 46 LERWDPRLEPDIVVYNAVLNACVRRKQ--------WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRK 117 (455)
Q Consensus 46 ~~~~~~~~~~~~~~~~~li~~~~~~~~--------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 117 (455)
...|+ |...+......++......+. ...-.+++.+|. +.+-.+|.+.++++.|..+.+.
T Consensus 139 IDPf~-G~~L~~~~l~~~L~~~~g~~~~l~~~~L~~a~~~~il~Rml-----------~nLK~~~~~~~~~~~AL~~~e~ 206 (269)
T PRK10941 139 INPFN-GETLDEHTLEVWLKGNISPSAELFNEDLDEADNIEVIRKLL-----------DTLKAALMEEKQMELALRASEA 206 (269)
T ss_pred EeCCC-CCCCCHHHHHHHHHhhcCCcccCCHHHcCCCCHHHHHHHHH-----------HHHHHHHHHcCcHHHHHHHHHH
Confidence 33455 666777777777764432211 111233444443 3456778899999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH
Q 048235 118 VQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG-IVGSAALYYDLARCLC 172 (455)
Q Consensus 118 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~ 172 (455)
+..-.|.+..-+.--.-.|.+.|.+..|..=++...+.- -.|+.......+....
T Consensus 207 ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 207 LLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 998888788778878888999999999999888887653 3445555555555443
No 384
>PHA02875 ankyrin repeat protein; Provisional
Probab=60.79 E-value=1.5e+02 Score=27.97 Aligned_cols=210 Identities=9% Similarity=0.112 Sum_probs=95.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhh--HHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCHH--HHHHHHHHHHhcC
Q 048235 66 ACVRRKQWEGAFWVLQQLKQQGQKPSATT--YGLVMEVMLACGKYNLVYEFFRKVQKSYI-PNAL--AYKVLVNTLWREG 140 (455)
Q Consensus 66 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~li~~~~~~g 140 (455)
..++.|+.+- ++.+.+.|..|+... ..+.+...+..|+.+.+.-+++. +. ++.. ...+.+...+..|
T Consensus 8 ~A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~----ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKH----GAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC----CCCccccCCCcccHHHHHHHCC
Confidence 3345566544 444555677665433 23344555677777655444432 21 2111 1123345556778
Q ss_pred ChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHH--HHHHHHHHHhcCCHHHH
Q 048235 141 KTDEAVSAVEDMERRGIVGSAA---LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVS--YTGLIQACLDSGNIQNA 215 (455)
Q Consensus 141 ~~~~a~~~~~~m~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~a 215 (455)
+.+.+..+++ .|...+.. .-.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+
T Consensus 80 ~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v 151 (413)
T PHA02875 80 DVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGI 151 (413)
T ss_pred CHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 8776655553 32211100 0011223334556654 4444555665544221 12234455567777766
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHH---HHHHHHHHHHcCC
Q 048235 216 AYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT---FNTMLDACAAEKR 292 (455)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~---~~~li~~~~~~~~ 292 (455)
..+++.-......|..-++.|. ..+..|+.+ +.+.+.+.| ..|+... ..+++...+..|+
T Consensus 152 ~~Ll~~g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~g------------a~~n~~~~~~~~t~l~~A~~~~~ 214 (413)
T PHA02875 152 ELLIDHKACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSG------------ANIDYFGKNGCVAALCYAIENNK 214 (413)
T ss_pred HHHHhcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCC------------CCCCcCCCCCCchHHHHHHHcCC
Confidence 5555432211112222223333 233455543 445566666 3333211 1234443445566
Q ss_pred HHHHHHHHHHHHHcCCCCCH
Q 048235 293 WDDLELVYKRMLHHGLHFNA 312 (455)
Q Consensus 293 ~~~a~~~~~~m~~~~~~p~~ 312 (455)
.+ +.+.+.+.|..++.
T Consensus 215 ~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 215 ID----IVRLFIKRGADCNI 230 (413)
T ss_pred HH----HHHHHHHCCcCcch
Confidence 54 44455566766654
No 385
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.76 E-value=1.5e+02 Score=27.77 Aligned_cols=61 Identities=15% Similarity=0.374 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048235 198 SYTGLIQACLDSGNIQNAAYIFNQMKNFCSP---NLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258 (455)
Q Consensus 198 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 258 (455)
.+.-+.+-|..+|+++.|++.|-+.+.-+.. .+..|-.+|..-...|++.....+..+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3455566666666666666666665443222 233344455555556666666555555544
No 386
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=60.37 E-value=1.4e+02 Score=27.62 Aligned_cols=192 Identities=16% Similarity=0.174 Sum_probs=109.8
Q ss_pred cCCHHHHHHHHHHHHH-----cCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cC
Q 048235 70 RKQWEGAFWVLQQLKQ-----QGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWR----EG 140 (455)
Q Consensus 70 ~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 140 (455)
.++.+.|.+-+-...+ .+...+...+..++..|...++|+.--+....+.......-.+...|+.-+.. ..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~ 104 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQLKQAIQSMVQQAMTYIDGTP 104 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCC
Confidence 4556666554433322 23445667777888888888888876666555543222222223333322221 12
Q ss_pred ChHHHHHHHHHHHH--CC-C--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---Cc--HHHHHHHHHHHHhc
Q 048235 141 KTDEAVSAVEDMER--RG-I--VGS-AALYYDLARCLCSAGKCEEALMQMDKICKVANK---PL--VVSYTGLIQACLDS 209 (455)
Q Consensus 141 ~~~~a~~~~~~m~~--~~-~--~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~---~~--~~~~~~li~~~~~~ 209 (455)
+.+--+.+.+.+.. .| + ... ...-..|...+-..|+.++|..++.+..-.-.. .. +....--++.|...
T Consensus 105 d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~ 184 (439)
T KOG1498|consen 105 DLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLR 184 (439)
T ss_pred CchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 22333333333322 12 1 111 112234666677889999999988764321100 00 11122235677788
Q ss_pred CCHHHHHHHHHHHHhc--CCCCHH-----HHHHHHHHHHhcCChhHHHHHHHHHHhccc
Q 048235 210 GNIQNAAYIFNQMKNF--CSPNLV-----TCNIMVKAYLEHGLFEEAMKLFQEMAEDSN 261 (455)
Q Consensus 210 ~~~~~a~~~~~~~~~~--~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 261 (455)
+++-.|.-+-+.+... ..|+.. -|+.+++.....+.+-.+.+.|+.....|.
T Consensus 185 ~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~ 243 (439)
T KOG1498|consen 185 LDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGN 243 (439)
T ss_pred hhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccc
Confidence 8898888888887544 455543 478888888888889999999999887763
No 387
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=60.35 E-value=33 Score=22.15 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 246 FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 246 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
.+...++++.+.... =|-.---.+|.+|...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~R--------------HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQR--------------HDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445555666665532 3555566789999999999999999998876
No 388
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=59.91 E-value=20 Score=31.73 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=35.6
Q ss_pred CCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048235 54 EPDIV-VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVM 99 (455)
Q Consensus 54 ~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 99 (455)
.||.. -||..|....+.||+++|+.++++.++.|+.--..+|...+
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 34544 46789999999999999999999999999876566665444
No 389
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.65 E-value=1e+02 Score=29.46 Aligned_cols=107 Identities=14% Similarity=0.050 Sum_probs=70.7
Q ss_pred HHHhcCChHHHHHHHHHHHH---CCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCCc----
Q 048235 135 TLWREGKTDEAVSAVEDMER---RGIVGSA-----ALYYDLARCLCSAGKCEEALMQMDKICK-------VANKPL---- 195 (455)
Q Consensus 135 ~~~~~g~~~~a~~~~~~m~~---~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~-------~~~~~~---- 195 (455)
.+.-.|++..|.+++...-- .|...++ ..+|.|.-.+.+.|.+..+..+|.+..+ .|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34557899999888754321 2322221 2234455555566777666666665543 454442
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 048235 196 -------VVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLE 242 (455)
Q Consensus 196 -------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 242 (455)
..+|| ..-.|...|++-.|.+.|.........++..|-.|..+|..
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 23455 44567789999999999999887788899999999998874
No 390
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=58.60 E-value=1e+02 Score=25.25 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=18.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc
Q 048235 236 MVKAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 236 li~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
.+..|.+.|.+++|.+++++..+.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcC
Confidence 455678888888888888888764
No 391
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=58.47 E-value=68 Score=23.21 Aligned_cols=78 Identities=17% Similarity=0.163 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 048235 177 CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256 (455)
Q Consensus 177 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 256 (455)
.++|..+-+.+...+-. ...+--.-+..+...|+++.|..+.+.+ ..||...|.+|-. .+.|..+.+..-+.+|
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~---~~pdlepw~ALce--~rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL---CYPDLEPWLALCE--WRLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC---CCchHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 45565555555544321 2222222344566788888888877766 3588888776643 5667777777777777
Q ss_pred Hhcc
Q 048235 257 AEDS 260 (455)
Q Consensus 257 ~~~~ 260 (455)
..+|
T Consensus 95 a~sg 98 (115)
T TIGR02508 95 AASG 98 (115)
T ss_pred HhCC
Confidence 7766
No 392
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=58.27 E-value=39 Score=20.43 Aligned_cols=34 Identities=9% Similarity=0.180 Sum_probs=22.3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048235 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMIL 320 (455)
Q Consensus 287 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 320 (455)
..+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666677777777777777766666665543
No 393
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=57.99 E-value=1.6e+02 Score=27.35 Aligned_cols=65 Identities=14% Similarity=-0.004 Sum_probs=51.3
Q ss_pred cHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHhh
Q 048235 276 DIYTFNTM---LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA-SRAGKVELLEITWEHLAR 340 (455)
Q Consensus 276 ~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~ 340 (455)
|...|.++ +..+.+.|.+..|.++.+-+.+.+..-|+.....+|+.| .++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 55555555 557889999999999999999965554676777778887 899999988888888655
No 394
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=57.74 E-value=86 Score=24.19 Aligned_cols=72 Identities=7% Similarity=-0.052 Sum_probs=48.2
Q ss_pred CcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCh
Q 048235 275 PDIYTFNTMLDACAAEK---RWDDLELVYKRMLHHGLHFN--AKRHLRMILDASRAGKVELLEITWEHLARADRITPP 347 (455)
Q Consensus 275 p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 347 (455)
++..+--.+..++.+.. +..+.+.+++.+.+. -.|+ ......+..++.+.++++.+.++++.+++..+..+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 45555455555666554 456777888888862 2233 234445666788999999999999999888766554
No 395
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=57.48 E-value=1.9e+02 Score=27.97 Aligned_cols=78 Identities=10% Similarity=0.139 Sum_probs=55.5
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHH
Q 048235 52 RLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ-GQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYK 130 (455)
Q Consensus 52 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 130 (455)
....|+..|...+..+-+.+.+.+...+|.+|... +-.|+...+.+. .-|-...+++.|..+|.+-.+..+.++..|-
T Consensus 100 rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 100 RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 34559999999999888888899999999999985 344555555443 2233444488888888887776665554443
No 396
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=57.39 E-value=85 Score=31.26 Aligned_cols=75 Identities=17% Similarity=0.109 Sum_probs=55.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHH------HHHHHHHHHH
Q 048235 12 SIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEG------AFWVLQQLKQ 85 (455)
Q Consensus 12 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~------a~~~~~~m~~ 85 (455)
++..+|..+|++-.+.++++.+...+ .+.+.=...||..|+...+.|.++- |.+.+++.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~-------------~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a-- 97 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHN-------------KGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA-- 97 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-------------cCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh--
Confidence 78999999999999999999998643 4445556789999999999998653 33333333
Q ss_pred cCCCCCHhhHHHHHHHH
Q 048235 86 QGQKPSATTYGLVMEVM 102 (455)
Q Consensus 86 ~~~~p~~~~~~~l~~~~ 102 (455)
-+.-|..||..++.+-
T Consensus 98 -~ln~d~~t~all~~~s 113 (1117)
T COG5108 98 -RLNGDSLTYALLCQAS 113 (1117)
T ss_pred -hcCCcchHHHHHHHhh
Confidence 3555788888877653
No 397
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=56.13 E-value=28 Score=18.09 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048235 210 GNIQNAAYIFNQMKNFCSPNLVTCNIMVK 238 (455)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 238 (455)
|+.+.|..+|+++....+.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 35566777777766655555666655443
No 398
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=56.02 E-value=2.6e+02 Score=29.17 Aligned_cols=228 Identities=15% Similarity=0.009 Sum_probs=120.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC----H---HHHHHHH-HHHHhcCCHHHHHHHHHHHHHcC----CCCcHHHHHHHH
Q 048235 136 LWREGKTDEAVSAVEDMERRGIVGS----A---ALYYDLA-RCLCSAGKCEEALMQMDKICKVA----NKPLVVSYTGLI 203 (455)
Q Consensus 136 ~~~~g~~~~a~~~~~~m~~~~~~~~----~---~~~~~l~-~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~~~li 203 (455)
.....++.+|..++.++...-..|+ . ..++.+- ......|+++.|.++-+.....- ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456889999999988766422222 1 1222221 12235789999998888766542 234466777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHH--HHHhcCChh--HHHHHHHHHHhcccccchhhccCCCCCC
Q 048235 204 QACLDSGNIQNAAYIFNQMKNF----CSPNLVTCNIMVK--AYLEHGLFE--EAMKLFQEMAEDSNHINREYDKKGLVIP 275 (455)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~li~--~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~~~~~p 275 (455)
.+..-.|++++|..+..+..+. ..+-...|..+.. .+...|+.. +....|........+ .+....+
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~------q~~~~~f 578 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLE------QKPRHEF 578 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh------hcccchh
Confidence 8888899999999988877553 2233333444332 344566333 333334333332100 0000011
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-ChH
Q 048235 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLH----HGLHFNAK--RHLRMILDASRAGKVELLEITWEHLARADRIT-PPA 348 (455)
Q Consensus 276 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~ 348 (455)
-..++..++.++.+ .+.+..-...-.+ ....|-.. .+..++......|++++|...++++....... +..
T Consensus 579 ~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~ 655 (894)
T COG2909 579 LVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHV 655 (894)
T ss_pred HHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 23445555555555 3333332222222 22222111 22245666788999999999888875443222 111
Q ss_pred hHHH---HHHHH--hhccchHHHHHHhhh
Q 048235 349 LIKE---RFCNR--LENKDYGSAISCLVS 372 (455)
Q Consensus 349 ~~~~---~~~~~--~~~~~~~~A~~~~~~ 372 (455)
.+.. .+... ...|+.+.|...+.+
T Consensus 656 ~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 656 DYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 1111 11111 278888888876665
No 399
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=55.51 E-value=89 Score=27.88 Aligned_cols=42 Identities=7% Similarity=0.085 Sum_probs=21.0
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 048235 78 WVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQ 119 (455)
Q Consensus 78 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 119 (455)
++++.|.+.++.|.-..|.-+.-.+.+.=.+.+++.+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 344444555555555555444444445555555555555543
No 400
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=55.31 E-value=1.6e+02 Score=26.60 Aligned_cols=103 Identities=10% Similarity=0.023 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCC
Q 048235 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD-ACAAEKRWDDLELVYKRMLHHGLH 309 (455)
Q Consensus 231 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~ 309 (455)
..+-....-||+.|+-+.|++.+++..+..+ ..|.+.|...+..=+. .|....-+.+-++..+.+.+.|-.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktv--------s~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgD 176 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTV--------SLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGD 176 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHh--------hcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 3455567778899999988887776654321 1125566665544333 344444456666677777777777
Q ss_pred CCHHHHHHHHHH--HHhcCChHHHHHHHHHHhhc
Q 048235 310 FNAKRHLRMILD--ASRAGKVELLEITWEHLARA 341 (455)
Q Consensus 310 p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~ 341 (455)
++..--...-.+ |....++++|-.+|-.....
T Consensus 177 WeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 177 WERRNRLKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 665422222222 35567788888877766543
No 401
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=54.96 E-value=1.2e+02 Score=25.03 Aligned_cols=149 Identities=11% Similarity=0.080 Sum_probs=0.0
Q ss_pred HCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 048235 154 RRGIVGSAALYYDLARCLCS----AGKCEEALMQMDKICKVANKPL----VVSYTGLIQACLDSGNIQNAAYIFNQMKN- 224 (455)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 224 (455)
+.|..++...++-++..+.+ .+..+-++.+=.+....++.++ ......-+..|-..|++.+.-.+|-....
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g 80 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG 80 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh
Q ss_pred ----------------------------------------------cCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048235 225 ----------------------------------------------FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258 (455)
Q Consensus 225 ----------------------------------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 258 (455)
.-.+=-..=-+++..|-+.-++.++.++++.|.+
T Consensus 81 ce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~e 160 (233)
T PF14669_consen 81 CEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHE 160 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cccccch--hhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048235 259 DSNHINR--EYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302 (455)
Q Consensus 259 ~~~~~~~--~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 302 (455)
..+..+. .........+.-...|.....|.+.|.+|.|..++++
T Consensus 161 l~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 161 LQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 402
>PRK12356 glutaminase; Reviewed
Probab=54.59 E-value=1.5e+02 Score=26.84 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=11.2
Q ss_pred CCCCHhHHHHHHHHHHhcCC
Q 048235 53 LEPDIVVYNAVLNACVRRKQ 72 (455)
Q Consensus 53 ~~~~~~~~~~li~~~~~~~~ 72 (455)
.+|+-..||.++..-...|.
T Consensus 94 ~EPSG~~FNsi~~Le~~~g~ 113 (319)
T PRK12356 94 ADPTGLPFNSVIAIELHGGK 113 (319)
T ss_pred CCCCCCCcchHHHhhccCCC
Confidence 36666666666654444443
No 403
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=54.21 E-value=40 Score=29.92 Aligned_cols=44 Identities=11% Similarity=0.106 Sum_probs=34.2
Q ss_pred CCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 048235 273 VIPDIY-TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHL 316 (455)
Q Consensus 273 ~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 316 (455)
+.||.. -|+..|....+.||+++|++++++..+.|+.--..+|.
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 456554 46789999999999999999999999998764444443
No 404
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=54.15 E-value=1.9e+02 Score=26.93 Aligned_cols=100 Identities=14% Similarity=0.004 Sum_probs=64.1
Q ss_pred CHHHHHHH---HHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 048235 229 NLVTCNIM---VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA-AEKRWDDLELVYKRML 304 (455)
Q Consensus 229 ~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~~~~~~a~~~~~~m~ 304 (455)
|...|.++ |..+.+.|-+..|+++.+-+..-. ..-|+.....+|+.|+ +.++++-.+++.+...
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLd------------p~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLD------------PDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC------------CCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 44444444 566788999999999999999865 2225666666777665 6778888888888765
Q ss_pred Hc------CCCCCHHHHHHHHHHHHhcCCh---------------HHHHHHHHHHhhcC
Q 048235 305 HH------GLHFNAKRHLRMILDASRAGKV---------------ELLEITWEHLARAD 342 (455)
Q Consensus 305 ~~------~~~p~~~~~~~ll~~~~~~g~~---------------~~a~~~~~~~~~~~ 342 (455)
.. ..-|+. .|.. .-++...++. +.|...+.+.....
T Consensus 167 ~~~~~~~~~~lPn~-a~S~-aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 167 AKCYRNWLSLLPNF-AFSI-ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred hhhhhhhhhhCccH-HHHH-HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 51 123443 4443 3344445555 67777777665443
No 405
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=54.11 E-value=1.2e+02 Score=24.85 Aligned_cols=50 Identities=8% Similarity=-0.005 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHcCCCCCH--H-----HHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 048235 293 WDDLELVYKRMLHHGLHFNA--K-----RHLRMILDASRAGKVELLEITWEHLARAD 342 (455)
Q Consensus 293 ~~~a~~~~~~m~~~~~~p~~--~-----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 342 (455)
++.|+.+|+.+.+.--.|.. . .-...+..|.+.|.+++|.+++++.....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~ 141 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDP 141 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCC
Confidence 35566666666653222211 1 12234556899999999999999998743
No 406
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=53.93 E-value=2.1e+02 Score=30.62 Aligned_cols=31 Identities=6% Similarity=0.249 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHC
Q 048235 125 NALAYKVLVNTLWREG--KTDEAVSAVEDMERR 155 (455)
Q Consensus 125 ~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~ 155 (455)
...-...++.+|++.+ +++.|+....++.+.
T Consensus 811 ~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 811 KDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred chhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 4445566777777777 777777777777665
No 407
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=53.90 E-value=1.2e+02 Score=24.74 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHhcC-----------ChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHH
Q 048235 227 SPNLVTCNIMVKAYLEHG-----------LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD 295 (455)
Q Consensus 227 ~~~~~~~~~li~~~~~~~-----------~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 295 (455)
|....++.++..+|...+ .+++|...|++... ..|+..+|+.-+.... +
T Consensus 66 P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--------------~~P~ne~Y~ksLe~~~------k 125 (186)
T PF06552_consen 66 PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--------------EDPNNELYRKSLEMAA------K 125 (186)
T ss_dssp TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--------------H-TT-HHHHHHHHHHH------T
T ss_pred CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--------------cCCCcHHHHHHHHHHH------h
Confidence 333455555555554332 25677777888777 4599999998888764 3
Q ss_pred HHHHHHHHHHcCC
Q 048235 296 LELVYKRMLHHGL 308 (455)
Q Consensus 296 a~~~~~~m~~~~~ 308 (455)
|-++..++.+.+.
T Consensus 126 ap~lh~e~~~~~~ 138 (186)
T PF06552_consen 126 APELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHSSS
T ss_pred hHHHHHHHHHHHh
Confidence 5666666666554
No 408
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=53.52 E-value=4.5e+02 Score=31.15 Aligned_cols=150 Identities=11% Similarity=0.072 Sum_probs=91.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHH----HHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048235 62 AVLNACVRRKQWEGAFWVLQQ----LKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLW 137 (455)
Q Consensus 62 ~li~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 137 (455)
.+..+-.+.+.+.+|+..++. .++.. -...-|-.+...|...+++|.+..+...... +...+ .-|....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~sl~-~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPSLY-QQILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----CccHH-HHHHHHH
Confidence 455566778889999988888 33221 1234445555689999999988887664221 22233 3344456
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHH-HHHHHHhcCCHHHHH
Q 048235 138 REGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG-LIQACLDSGNIQNAA 216 (455)
Q Consensus 138 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~~~~~~~a~ 216 (455)
..|++..|...|+.+.+.+ ++...+++.++......|.++.+....+-..... .+....+++ =+.+--+.++++...
T Consensus 1461 ~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhh
Confidence 7799999999999998875 2335567777777777788887776554443332 222222222 233335566666655
Q ss_pred HHHH
Q 048235 217 YIFN 220 (455)
Q Consensus 217 ~~~~ 220 (455)
....
T Consensus 1539 ~~l~ 1542 (2382)
T KOG0890|consen 1539 SYLS 1542 (2382)
T ss_pred hhhh
Confidence 5543
No 409
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=53.07 E-value=36 Score=22.31 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=36.0
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHH
Q 048235 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA 104 (455)
Q Consensus 53 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 104 (455)
+.|....++.++..+++-.-.+.++..+.+..+.|.- +..+|.--++.+++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 3567778888888888888888888888888888753 56666655555443
No 410
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.79 E-value=1.4e+02 Score=31.06 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=84.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 048235 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253 (455)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 253 (455)
..++++++.+.+...--| .++|..+.+.|-++-|+.+.+.=+. -...+...|+.+.|++.-
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~t-----------RF~LaLe~gnle~ale~a 666 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERT-----------RFELALECGNLEVALEAA 666 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcch-----------heeeehhcCCHHHHHHHH
Confidence 456666665544322222 2345555666777777666543221 122345667777776644
Q ss_pred HHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 048235 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEI 333 (455)
Q Consensus 254 ~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 333 (455)
.++ -+..+|..|.......|+.+-|+..|++.+.. + .|--.|.-.|+.++-.+
T Consensus 667 kkl------------------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~knf----e-----kLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 667 KKL------------------DDKDVWERLGEEALRQGNHQIAEMCYQRTKNF----E-----KLSFLYLITGNLEKLSK 719 (1202)
T ss_pred Hhc------------------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhhh----h-----heeEEEEEeCCHHHHHH
Confidence 332 36677888888777888888787777766552 1 12222445677776665
Q ss_pred HHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCCC
Q 048235 334 TWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSG 377 (455)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 377 (455)
+.+...... + ....+...+-.|+.++-..+++....-+
T Consensus 720 m~~iae~r~----D--~~~~~qnalYl~dv~ervkIl~n~g~~~ 757 (1202)
T KOG0292|consen 720 MMKIAEIRN----D--ATGQFQNALYLGDVKERVKILENGGQLP 757 (1202)
T ss_pred HHHHHHhhh----h--hHHHHHHHHHhccHHHHHHHHHhcCccc
Confidence 554443221 1 1223333444677777777777655433
No 411
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=51.45 E-value=3.3e+02 Score=29.09 Aligned_cols=315 Identities=11% Similarity=0.039 Sum_probs=160.3
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHH-------HHHHHhcCC---HHHHHHHHHH
Q 048235 13 IAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV-------LNACVRRKQ---WEGAFWVLQQ 82 (455)
Q Consensus 13 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~---~~~a~~~~~~ 82 (455)
+=+++.....+++|+..|+++... .+-....|.++ +.-....|+ +++|+.-|+.
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRES----------------FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY 544 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhc----------------CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 345677788899999999998742 22233333333 333333444 7888888888
Q ss_pred HHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CCH--------------------HHHHHHHHHHH---
Q 048235 83 LKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI--PNA--------------------LAYKVLVNTLW--- 137 (455)
Q Consensus 83 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~--------------------~~~~~li~~~~--- 137 (455)
+...--.| --|-.-.-+|-+.|++++=.+.+.-..++.+ |-. .+|.-++-+..
T Consensus 545 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (932)
T PRK13184 545 LHGGVGAP--LEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAP 622 (932)
T ss_pred hcCCCCCc--hHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 87542222 2233333357788888876666666555433 211 12222222221
Q ss_pred hcCChHHHHHHHHHHHHCC-------CCCCHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 048235 138 REGKTDEAVSAVEDMERRG-------IVGSAAL-----YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205 (455)
Q Consensus 138 ~~g~~~~a~~~~~~m~~~~-------~~~~~~~-----~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 205 (455)
+.-...+-.++|+.+..+- +.+++.+ +..++. |. .|..---..+|+...+. +|-.+.......
T Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 697 (932)
T PRK13184 623 EKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLS-FW-SGFTPFLPELFQRAWDL---RDYRALADIFYV 697 (932)
T ss_pred ccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHH-HH-hcCchhhHHHHHHHhhc---ccHHHHHHHHHH
Confidence 1222333445555554431 1112111 111222 11 23333344555554443 244556666666
Q ss_pred HHhcCCHHHHHHHHHHHHhc-----CCCCH--------HHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCC
Q 048235 206 CLDSGNIQNAAYIFNQMKNF-----CSPNL--------VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGL 272 (455)
Q Consensus 206 ~~~~~~~~~a~~~~~~~~~~-----~~~~~--------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 272 (455)
.+..|+++-+.+..+.+.+. .+.+. ..|-.-+.+......++++.+.+..
T Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 760 (932)
T PRK13184 698 ACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDN----------------- 760 (932)
T ss_pred HHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhh-----------------
Confidence 78899999888888777642 11111 1133334555555566666553333
Q ss_pred CCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChH
Q 048235 273 VIPDIY--TFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA--KRHLRMILDASRAGKVELLEITWEHLARADRITPPA 348 (455)
Q Consensus 273 ~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 348 (455)
..|... .+..++.-+.-.++.+....+.+.+.+.-..... .....-+.+|.-..++++|-++++...........+
T Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (932)
T PRK13184 761 TDPTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYS 840 (932)
T ss_pred CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccc
Confidence 334433 3333444344455556566666555554322222 233445778888899999999987765444333333
Q ss_pred hHHHHHHHHh-hccchHHHH
Q 048235 349 LIKERFCNRL-ENKDYGSAI 367 (455)
Q Consensus 349 ~~~~~~~~~~-~~~~~~~A~ 367 (455)
...-++.+.+ -.++-+.|.
T Consensus 841 ~~~~~~~~~~~~~~~~~~~~ 860 (932)
T PRK13184 841 EAFVLYGCYLALTEDREAAK 860 (932)
T ss_pred hHHHHHHHHHHhcCchhHHH
Confidence 3333444443 334444443
No 412
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.14 E-value=1e+02 Score=26.78 Aligned_cols=59 Identities=19% Similarity=0.090 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048235 280 FNTMLDACAAEKRWDDLELVYKRMLH----HGL-HFNAKRHLRMILDASRAGKVELLEITWEHL 338 (455)
Q Consensus 280 ~~~li~~~~~~~~~~~a~~~~~~m~~----~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 338 (455)
-..+...|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.+....+.-++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33556678888888888888887753 222 223344555666667777777766654444
No 413
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=50.95 E-value=2.5e+02 Score=27.50 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=13.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHhh
Q 048235 12 SIAVTLGQAGHIKELFDVIDSMR 34 (455)
Q Consensus 12 ~li~~~~~~g~~~~A~~~~~~~~ 34 (455)
.++.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 34455555666666666655554
No 414
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=50.81 E-value=2e+02 Score=26.24 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 048235 130 KVLVNTLWREGKTDEAVSAVEDMERR---GIVGSAALYY--DLARCLCSAGKCEEALMQMDKICK 189 (455)
Q Consensus 130 ~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~m~~ 189 (455)
..++...-+.++.++|++.++++.+. .-.|+...|. ...+++...|+..++.+++.+..+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33444444555667777766666543 2234444333 344555566777777776666655
No 415
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.76 E-value=87 Score=22.16 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=11.4
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 048235 134 NTLWREGKTDEAVSAVEDMER 154 (455)
Q Consensus 134 ~~~~~~g~~~~a~~~~~~m~~ 154 (455)
......|++++|...+++..+
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 344455666666666655543
No 416
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=50.56 E-value=2.5e+02 Score=27.39 Aligned_cols=188 Identities=11% Similarity=0.065 Sum_probs=92.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHH--HHHcC
Q 048235 215 AAYIFNQMKNFCSPNLVTCNI-MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA--CAAEK 291 (455)
Q Consensus 215 a~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~~ 291 (455)
+..++.++...-..+...|-. .+++..+.|+...|..++.++-. . ..|.....-.++.+ .....
T Consensus 47 s~~yl~qa~qs~~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~-~------------Ltd~Q~~~~~LL~ael~la~~ 113 (604)
T COG3107 47 SQFYLQQAQQSSGEQQNDWLLLAARALVEEGKTAQAQALLNQLPQ-E------------LTDAQRAEKSLLAAELALAQK 113 (604)
T ss_pred HHHHHHHHhhcCchhhhhHHHHHHHHHHHcCChHHHHHHHHhccc-c------------CCHHHHHHHHHHHHHHHHhcc
Confidence 344445554432233334443 35677788888888888888765 3 55666666666654 33456
Q ss_pred CHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHh---HHHHHHHHhhccchHHH
Q 048235 292 RWDDLELVYKRMLHHGLHFNA--KRHLRMILDASRAGKVELLEITWEHLARADRITPPAL---IKERFCNRLENKDYGSA 366 (455)
Q Consensus 292 ~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~A 366 (455)
+...|...+.+.....+.++. ..|-.-+.+....|+.-++.+..-.+ ++.-.+.. .....+.+++ ....
T Consensus 114 q~~~Al~~L~~~~~~~ls~~Qq~Ry~q~~a~a~ea~~~~~~a~rari~~---~~lL~~k~~q~nid~tW~ll~---~~~~ 187 (604)
T COG3107 114 QPAAALQQLAKLLPADLSQNQQARYYQARADALEARGDSIDAARARIAQ---DPLLSGKAKQANIDKTWQLLS---EQAN 187 (604)
T ss_pred ChHHHHHHHhhcchhhcCHHHHHHHHHHHHHHHhcccchHHHHHHHHHh---hhhccchhHHHhHHHHHHHhh---hhcc
Confidence 778888888877766666552 23333444444443433332222111 11111100 0011111111 0000
Q ss_pred HHHhhhcCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHhccccccccCCCchh
Q 048235 367 ISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPV 423 (455)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 423 (455)
..+++....+.+. .-..|..+...+...+..-...+...+.=...+|+|+.+...
T Consensus 188 ~~VIn~sa~e~~~--~L~GWL~L~rv~~~~~~~p~qlk~~i~~Wq~~yPqhPaA~~~ 242 (604)
T COG3107 188 TGVINNSADEGNA--ALQGWLDLARVYKDNGSDPPQLKAGIEDWQKRYPQHPAAKML 242 (604)
T ss_pred ccceecccCCccc--ccchHHHHHHHHHhcccCHHHHHHHHHHHHhcCCCCchhhhC
Confidence 1111211111111 237899988876666655444444444444488999887643
No 417
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.29 E-value=2.2e+02 Score=26.67 Aligned_cols=155 Identities=8% Similarity=-0.012 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----
Q 048235 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG---- 307 (455)
Q Consensus 232 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---- 307 (455)
.+.-+...|...|+++.|++.|.+.+.-.- ...-...+|..+|..-.-.|+|.....+..+..+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCT----------s~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCT----------SAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhc----------chHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence 456678899999999999999999766430 011134566667777777888988888888777641
Q ss_pred -----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC------CChHhHHHHHHHHhhccchHHHHHHhhhcCCC
Q 048235 308 -----LHFNAKRHLRMILDASRAGKVELLEITWEHLARADRI------TPPALIKERFCNRLENKDYGSAISCLVSHPVS 376 (455)
Q Consensus 308 -----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 376 (455)
+.+-...+..+... ..++++.|.+.|-........ +.+..+...+|.+.--++-+--+.++.+..+.
T Consensus 222 ~~~q~v~~kl~C~agLa~L--~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk 299 (466)
T KOG0686|consen 222 NLAQEVPAKLKCAAGLANL--LLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFK 299 (466)
T ss_pred hHHHhcCcchHHHHHHHHH--HHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhh
Confidence 22222333333333 334777777766554332222 12222233333332222222222333332222
Q ss_pred CCccccHHHHHHHHhhhcccCCcc
Q 048235 377 GSPEFSRNAWLKFFKENSQHFGQD 400 (455)
Q Consensus 377 ~~~~~~~~~~~~l~~~~~~~~~~~ 400 (455)
.-.+.+..+|.-+.. ++..+..
T Consensus 300 ~flel~Pqlr~il~~--fy~sky~ 321 (466)
T KOG0686|consen 300 LFLELEPQLREILFK--FYSSKYA 321 (466)
T ss_pred hHHhcChHHHHHHHH--HhhhhHH
Confidence 211223377777777 4555554
No 418
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=50.15 E-value=2.2e+02 Score=27.02 Aligned_cols=40 Identities=10% Similarity=-0.086 Sum_probs=23.0
Q ss_pred HcCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 048235 305 HHGLHFNAK--RHLRMILDASRAGKVELLEITWEHLARADRI 344 (455)
Q Consensus 305 ~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 344 (455)
...+.|.+. +...-+..+.+.+++..|..+-+++++.++.
T Consensus 291 hc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 291 HCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp CS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 334444432 3344455567888888888888888877654
No 419
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.61 E-value=1e+02 Score=26.73 Aligned_cols=61 Identities=10% Similarity=-0.000 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----c-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048235 197 VSYTGLIQACLDSGNIQNAAYIFNQMKN-----F-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMA 257 (455)
Q Consensus 197 ~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 257 (455)
...-.+..-|.+.|++++|.++|+.+.. + ..+...+...+..++...|+.+..+.+--++.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3344567778888888888888888742 2 33445556667777777888877776655543
No 420
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.99 E-value=1.8e+02 Score=25.15 Aligned_cols=117 Identities=10% Similarity=0.072 Sum_probs=74.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHH-H
Q 048235 206 CLDSGNIQNAAYIFNQMKNFCSPNL-VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT-M 283 (455)
Q Consensus 206 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~-l 283 (455)
|....+++.|...+.+... +.|+. .-|+.-+.++.+..+++.+..=-.+.++ +.||...-.. +
T Consensus 20 ~f~~k~y~~ai~~y~raI~-~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--------------l~~N~vk~h~fl 84 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC-INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--------------LDPNLVKAHYFL 84 (284)
T ss_pred ccchhhhchHHHHHHHHHh-cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--------------cChHHHHHHHHH
Confidence 3445567777775555544 45665 5566778888889999998887777777 5577654444 4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048235 284 LDACAAEKRWDDLELVYKRMLH----HGLHFNAKRHLRMILDASRAGKVELLEITWEH 337 (455)
Q Consensus 284 i~~~~~~~~~~~a~~~~~~m~~----~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 337 (455)
..+......+++|+..+.+..+ ..+.|.......|..+--..=...+..++++.
T Consensus 85 g~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 85 GQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 4567778889999999998854 33444444555555553333333444444443
No 421
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.25 E-value=2.8e+02 Score=27.34 Aligned_cols=217 Identities=12% Similarity=0.013 Sum_probs=120.0
Q ss_pred CCHHHHHHHHHHHHhcC------------CCCHHHHHHHHHHHHhcCChhHHHHHHHHH-------HhcccccchhhccC
Q 048235 210 GNIQNAAYIFNQMKNFC------------SPNLVTCNIMVKAYLEHGLFEEAMKLFQEM-------AEDSNHINREYDKK 270 (455)
Q Consensus 210 ~~~~~a~~~~~~~~~~~------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m-------~~~~~~~~~~~~~~ 270 (455)
..+++|...|....... |-.+.+.-.+...+...|+.+-|-.++++. ......+..-...-
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 44666777776654422 223445555666777788877665555543 33221111100111
Q ss_pred CCCCC-cHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHhhcC--C
Q 048235 271 GLVIP-DIYTFNTM---LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA-SRAGKVELLEITWEHLARAD--R 343 (455)
Q Consensus 271 ~~~~p-~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~--~ 343 (455)
.-..| |...|.+| +....+.|.+..|+++-+-+.+....-|+.....+|+.| .++.+++--+++++...... .
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 11223 34444444 456778999999999999998865555677888888887 78899998888888774333 2
Q ss_pred CCChHhHHHHHHHH-hhccc---hHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHhccccccc-cC
Q 048235 344 ITPPALIKERFCNR-LENKD---YGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTR-NG 418 (455)
Q Consensus 344 ~~~~~~~~~~~~~~-~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~ 418 (455)
..|+-.+...++.. ++... -..|...+..++.-.+ .+...|+. .+..+.+ +.-...+.....-|+ ..
T Consensus 412 ~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P-----~vl~eLld--~~~l~~d-a~~~~~k~~~~~a~~~e~ 483 (665)
T KOG2422|consen 412 QLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP-----LVLSELLD--ELLLGDD-ALTKDLKFDGSSAENSEL 483 (665)
T ss_pred hcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc-----HHHHHHHH--hccCCch-hhhhhhcccccccccccc
Confidence 23332222222222 23332 4555656655543221 45555666 3444433 333333444433333 35
Q ss_pred CCchhHHHHHHhHHhh
Q 048235 419 SPYPVLQNLISSCKDF 434 (455)
Q Consensus 419 ~~~~~l~~~~~~~~~~ 434 (455)
.++..+..+|+...+.
T Consensus 484 pal~~lv~lY~~r~~~ 499 (665)
T KOG2422|consen 484 PALMLLVKLYANRNEE 499 (665)
T ss_pred hHHHHHHHHHHhhhhH
Confidence 6677778888776643
No 422
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=48.20 E-value=40 Score=22.10 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=37.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048235 273 VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRA 325 (455)
Q Consensus 273 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 325 (455)
+.|....++.++..+++..-.+.++..+.++.+.|. .+..+|..-++.+++.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 456777888888888888888888889988888775 3566676666666554
No 423
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=48.10 E-value=21 Score=27.22 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=25.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048235 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDA 322 (455)
Q Consensus 289 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 322 (455)
..|.-..|..+|..|++.|-.|| .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34555678999999999999998 577777654
No 424
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=47.96 E-value=2.1e+02 Score=25.65 Aligned_cols=151 Identities=12% Similarity=0.113 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 048235 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQ--GQKPS-ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNT 135 (455)
Q Consensus 59 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 135 (455)
.+..+-....-..+...+......+++. .+.-+ ..+--.++....+..+.....+.+..+.. ...-...+..
T Consensus 62 f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~-----v~~~~~~l~~ 136 (291)
T PF10475_consen 62 FFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKT-----VQQTQSRLQE 136 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 3344434433344455555555444432 01111 11133445666677777777777776643 3445566777
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCcHHHHHHHHHHHHhcC
Q 048235 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA-----NKPLVVSYTGLIQACLDSG 210 (455)
Q Consensus 136 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~~ 210 (455)
+...|++..|++++.+..+.- . .-.-|+.+-.. ..++.+-....+++.+.. ..-|+..|..+..+|.-.|
T Consensus 137 ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L---~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLg 211 (291)
T PF10475_consen 137 LLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHL---SSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLG 211 (291)
T ss_pred HHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 888999999999998876631 0 00111111111 122223222232222211 1357889999999999999
Q ss_pred CHHHHHHHH
Q 048235 211 NIQNAAYIF 219 (455)
Q Consensus 211 ~~~~a~~~~ 219 (455)
+...+.+-+
T Consensus 212 k~~~~~dkl 220 (291)
T PF10475_consen 212 KTQSAMDKL 220 (291)
T ss_pred hhHHHHHHH
Confidence 876655433
No 425
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=47.85 E-value=2.1e+02 Score=25.77 Aligned_cols=108 Identities=10% Similarity=-0.021 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 048235 142 TDEAVSAVEDMERRGI----VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217 (455)
Q Consensus 142 ~~~a~~~~~~m~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 217 (455)
.+.|.+.|++....+. ..++..-..+.....+.|+.+....+++..... ++......++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4667777777776422 334455555566666677766555555444433 356667778888888888888888
Q ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHhcCCh--hHHHHHHH
Q 048235 218 IFNQMKNF--CSPNLVTCNIMVKAYLEHGLF--EEAMKLFQ 254 (455)
Q Consensus 218 ~~~~~~~~--~~~~~~~~~~li~~~~~~~~~--~~a~~~~~ 254 (455)
+++.+... +++.. . ..++.++...+.. +.+.+.+.
T Consensus 223 ~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHH
Confidence 88887664 22222 2 3344444433333 55555543
No 426
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=47.44 E-value=97 Score=21.73 Aligned_cols=14 Identities=21% Similarity=0.249 Sum_probs=6.9
Q ss_pred CCHHHHHHHHHHHH
Q 048235 175 GKCEEALMQMDKIC 188 (455)
Q Consensus 175 g~~~~a~~~~~~m~ 188 (455)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44445555444444
No 427
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=46.77 E-value=2e+02 Score=26.11 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=56.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHH--HHHHHHHHhcCChHHHHH
Q 048235 70 RKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAY--KVLVNTLWREGKTDEAVS 147 (455)
Q Consensus 70 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~ 147 (455)
.--..+|.++|++..+.| ..+|+.- +.+...|.. .+.+.++. .++.+| ..|.-+..+.|+..+|.+
T Consensus 229 a~Ti~~AE~l~k~ALka~----e~~yr~s-qq~qh~~~~------~da~~rRD-tnvl~YIKRRLAMCARklGrlrEA~K 296 (556)
T KOG3807|consen 229 ATTIVDAERLFKQALKAG----ETIYRQS-QQCQHQSPQ------HEAQLRRD-TNVLVYIKRRLAMCARKLGRLREAVK 296 (556)
T ss_pred hhhHHHHHHHHHHHHHHH----HHHHhhH-HHHhhhccc------hhhhhhcc-cchhhHHHHHHHHHHHHhhhHHHHHH
Confidence 344667888888877653 2233311 111112221 12222221 233333 234455556788888888
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048235 148 AVEDMERRGIVGS-AALYYDLARCLCSAGKCEEALMQMDKICKVA 191 (455)
Q Consensus 148 ~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 191 (455)
.|+++.+.-...+ ......|+.++....-+.++..++-+.-+..
T Consensus 297 ~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 297 IMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 8887765521111 1122347777777666666666666555443
No 428
>PRK09857 putative transposase; Provisional
Probab=46.29 E-value=2e+02 Score=25.78 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 048235 129 YKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL 195 (455)
Q Consensus 129 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 195 (455)
+..++....+.++.++..++++.+.+. .+......-++..-+.+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344554445556666666666655544 222222333455555566666667777777777776544
No 429
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=45.95 E-value=1.2e+02 Score=30.38 Aligned_cols=90 Identities=13% Similarity=0.171 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHHhcCCHHH------HHHHHHHHHhcCCCCHHHHHHHH
Q 048235 166 DLARCLCSAGKCEEALMQMDKICKVA--NKPLVVSYTGLIQACLDSGNIQN------AAYIFNQMKNFCSPNLVTCNIMV 237 (455)
Q Consensus 166 ~l~~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~li 237 (455)
+|..+|..+|++-.+.++++.+.... -+.-...||..++...+.|.++- |.+.++... +.-|..||..|+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~--ln~d~~t~all~ 110 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR--LNGDSLTYALLC 110 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh--cCCcchHHHHHH
Confidence 68888888888888888888876542 23335667777888888887642 222222221 556777777776
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 048235 238 KAYLEHGLFEEAMKLFQEMA 257 (455)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~m~ 257 (455)
.+-..--+-.-..-++.+.+
T Consensus 111 ~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 111 QASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HhhcChHhHHhccHHHHHHH
Confidence 65554322223333444443
No 430
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.08 E-value=1.2e+02 Score=22.25 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048235 164 YYDLARCLCSAGKCEEALMQMDKICK 189 (455)
Q Consensus 164 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 189 (455)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55566666666666666666665554
No 431
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=45.06 E-value=3.8e+02 Score=27.83 Aligned_cols=99 Identities=13% Similarity=0.061 Sum_probs=62.8
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH---HcCChhHHHHHHHHHHhcCCCCHHHHH
Q 048235 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVML---ACGKYNLVYEFFRKVQKSYIPNALAYK 130 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~ 130 (455)
..+...++.||..+.+.|++++....-..|.+.- +.+...|...+.... ..++...+..+|++..... .++..|.
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy-~~v~iw~ 187 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY-NSVPIWE 187 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc-ccchHHH
Confidence 5577888999999999999998888888887753 335566655554332 3355666777777665432 2333333
Q ss_pred HHHHHH-------HhcCChHHHHHHHHHHHH
Q 048235 131 VLVNTL-------WREGKTDEAVSAVEDMER 154 (455)
Q Consensus 131 ~li~~~-------~~~g~~~~a~~~~~~m~~ 154 (455)
-.+..+ .+.++++....+|.+.+.
T Consensus 188 e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 188 EVVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHHhccccccccccchhhhHHHHHHHh
Confidence 333322 234667777777777655
No 432
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=44.28 E-value=1.2e+02 Score=27.07 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHh-------hccchHHHHHH
Q 048235 297 ELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRL-------ENKDYGSAISC 369 (455)
Q Consensus 297 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~A~~~ 369 (455)
.++|+.+.+.++.|...++.-+.-.+.+.=.+.+...+|+.+...... -+. +..+.|.++ -.|++..-+++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-fd~-Ll~iCcsmlil~Re~il~~DF~~nmkL 340 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-FDF-LLYICCSMLILVRERILEGDFTVNMKL 340 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-hHH-HHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 578888889999999887776666678888999999999999865433 222 222223332 45889999999
Q ss_pred hhhcCC
Q 048235 370 LVSHPV 375 (455)
Q Consensus 370 ~~~~~~ 375 (455)
++.-|.
T Consensus 341 LQ~yp~ 346 (370)
T KOG4567|consen 341 LQNYPT 346 (370)
T ss_pred HhcCCC
Confidence 987764
No 433
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=44.09 E-value=4e+02 Score=27.90 Aligned_cols=223 Identities=12% Similarity=0.041 Sum_probs=123.6
Q ss_pred HHHcCChhHHHHHHHHHHhcCC-CCH-------HHHHHHHH-HHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 048235 102 MLACGKYNLVYEFFRKVQKSYI-PNA-------LAYKVLVN-TLWREGKTDEAVSAVEDMERR----GIVGSAALYYDLA 168 (455)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~li~-~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~l~ 168 (455)
.....++.+|..+..++....+ |+. ..|+.+-. .....|+++.|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456788999999988865433 221 23444332 334568899999888877654 2233455667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHHHH---HHH--HHHHHhcCC--HHHHHHHHHHHHhc-------CCCCHHHHH
Q 048235 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSY---TGL--IQACLDSGN--IQNAAYIFNQMKNF-------CSPNLVTCN 234 (455)
Q Consensus 169 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~---~~l--i~~~~~~~~--~~~a~~~~~~~~~~-------~~~~~~~~~ 234 (455)
.+..-.|++++|..+.....+..-.-+...+ ..+ ...+...|+ .......|...... ..+-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 8888899999999888876655322233332 222 222445563 23333444443221 112234455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcH--HH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCC--
Q 048235 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI--YT--FNTMLDACAAEKRWDDLELVYKRMLHHGL-- 308 (455)
Q Consensus 235 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~--~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~-- 308 (455)
.+..++.+ .+.+..-...-.+.|.. ..|.. .. +..|.......|+.++|...++++.....
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~----------~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSV----------YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhh----------cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 55555555 33333222222222200 12322 22 22566778889999999999999887322
Q ss_pred --CCCHHHHHHHHHH-H-HhcCChHHHHHHHHH
Q 048235 309 --HFNAKRHLRMILD-A-SRAGKVELLEITWEH 337 (455)
Q Consensus 309 --~p~~~~~~~ll~~-~-~~~g~~~~a~~~~~~ 337 (455)
.++..+....+.. | ...|+...+.....+
T Consensus 652 ~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 652 QYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2333333333433 2 567888877776655
No 434
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=42.54 E-value=71 Score=23.62 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=32.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 048235 283 MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330 (455)
Q Consensus 283 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 330 (455)
++..+...+..-.|.++++.+.+.+..++..|....+..+...|-+.+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 444455555556677777777777666677777777777777776543
No 435
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.00 E-value=31 Score=26.35 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=23.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048235 137 WREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170 (455)
Q Consensus 137 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 170 (455)
-..|.-..|..+|..|++.|-+||. |+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3446677788899999999888874 4556553
No 436
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=41.99 E-value=3.7e+02 Score=26.89 Aligned_cols=62 Identities=6% Similarity=0.130 Sum_probs=35.5
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048235 91 SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156 (455)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 156 (455)
....|..|++.+ +.-+.+...++++++.. . + ...+..++++....|-.....-+.+.+....
T Consensus 309 ~~~~f~~lv~~l-R~~~~e~l~~l~~~~~~-~-~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~ 370 (574)
T smart00638 309 AAAKFLRLVRLL-RTLSEEQLEQLWRQLYE-K-K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKK 370 (574)
T ss_pred hHHHHHHHHHHH-HhCCHHHHHHHHHHHHh-C-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 445566666544 44455666666666644 1 1 5666777777777776555555555444433
No 437
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=41.62 E-value=61 Score=17.73 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=20.5
Q ss_pred ChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHH
Q 048235 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284 (455)
Q Consensus 245 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li 284 (455)
.++.|..+|++... +.|++.+|....
T Consensus 2 E~dRAR~IyeR~v~--------------~hp~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVL--------------VHPEVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHH--------------hCCCchHHHHHH
Confidence 57889999999988 568888886543
No 438
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=41.41 E-value=59 Score=24.32 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 048235 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328 (455)
Q Consensus 282 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 328 (455)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 34455555555566666676666666666666666666666666643
No 439
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=41.20 E-value=1.9e+02 Score=23.39 Aligned_cols=59 Identities=12% Similarity=0.017 Sum_probs=38.5
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccc
Q 048235 303 MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKD 362 (455)
Q Consensus 303 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (455)
+.+.|++++.. -..++..+...++.-.|.++++.+.+.++...-++++..+..+.+.|-
T Consensus 17 L~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 17 CAQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 44567776653 335555665566677888888888887766555666666666655553
No 440
>PF13934 ELYS: Nuclear pore complex assembly
Probab=41.12 E-value=2.3e+02 Score=24.23 Aligned_cols=120 Identities=20% Similarity=0.241 Sum_probs=67.6
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048235 164 YYDLARCLC--SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241 (455)
Q Consensus 164 ~~~l~~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 241 (455)
|..+++++. ..+++++|.+.+-. ..+.|+ .-..++.++...|+.+.|..+++...-. ..+......++.. .
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~-l~s~~~~~~~~~~-L 151 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSH---PSLIPW--FPDKILQALLRRGDPKLALRYLRAVGPP-LSSPEALTLYFVA-L 151 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCC---CCCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCC-CCCHHHHHHHHHH-H
Confidence 445566655 45777777776621 122222 1234777777889999999999887531 1122223333333 6
Q ss_pred hcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048235 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308 (455)
Q Consensus 242 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 308 (455)
.++.+.+|+.+-+...+.. ....+..++..+..... + ...++++.+.-+
T Consensus 152 a~~~v~EAf~~~R~~~~~~---------------~~~l~e~l~~~~~~~~~--~-~~~~~~Ll~LPl 200 (226)
T PF13934_consen 152 ANGLVTEAFSFQRSYPDEL---------------RRRLFEQLLEHCLEECA--R-SGRLDELLSLPL 200 (226)
T ss_pred HcCCHHHHHHHHHhCchhh---------------hHHHHHHHHHHHHHHhh--h-hhHHHHHHhCCC
Confidence 6788999987776654421 24566777776664432 1 222455555333
No 441
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=40.76 E-value=82 Score=29.95 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=42.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH
Q 048235 135 TLWREGKTDEAVSAVEDMERRGIVGSAAL-YYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQ 213 (455)
Q Consensus 135 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 213 (455)
.+.+.+.++.|+.++.+..+.. |+... |..-..++.+.+++..|+.=.....+..+. -...|..=..++.+.+.+.
T Consensus 13 ~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHH
Confidence 3344455666666666655543 33222 222234555555555555444444443311 1222222223333444444
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHH
Q 048235 214 NAAYIFNQMKNFCSPNLVTCNIMV 237 (455)
Q Consensus 214 ~a~~~~~~~~~~~~~~~~~~~~li 237 (455)
+|...|+.... +.|+..-...++
T Consensus 90 ~A~~~l~~~~~-l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 90 KALLDLEKVKK-LAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHhhh-cCcCcHHHHHHH
Confidence 44444444433 334443333333
No 442
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=40.62 E-value=90 Score=19.42 Aligned_cols=28 Identities=11% Similarity=0.105 Sum_probs=13.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 048235 318 MILDASRAGKVELLEITWEHLARADRIT 345 (455)
Q Consensus 318 ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 345 (455)
+..++.+.|++++|.+..+.+++..|..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 3344555555555555555555554443
No 443
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=40.42 E-value=1.6e+02 Score=27.73 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048235 129 YKVLVNTLWREGKTDEAVSAVEDMERR------GIVG-SAALYYDLARCLCSAGKCEEALMQMDKI 187 (455)
Q Consensus 129 ~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 187 (455)
.-.|++.++-.||+..|+++++.+.-. .+++ ...+|.-+.-+|.-.+++.+|.++|...
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566677778888887777654211 1111 2344555666677777777777777654
No 444
>PHA02875 ankyrin repeat protein; Provisional
Probab=40.17 E-value=3.2e+02 Score=25.72 Aligned_cols=177 Identities=10% Similarity=0.071 Sum_probs=82.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh--hHHHHHHHHHHcCChhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhc
Q 048235 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSAT--TYGLVMEVMLACGKYNLVYEFFRKVQKSY-IPNALAYKVLVNTLWRE 139 (455)
Q Consensus 63 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~li~~~~~~ 139 (455)
.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++.-.... ..+..- .+.+...+..
T Consensus 38 pL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~ 112 (413)
T PHA02875 38 PIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDG-MTPLHLATIL 112 (413)
T ss_pred HHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCC-CCHHHHHHHh
Confidence 444555677765 445556667665532 12233455668888888777665322110 011111 1233344556
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcCCHHH
Q 048235 140 GKTDEAVSAVEDMERRGIVGSAAL--YYDLARCLCSAGKCEEALMQMDKICKVANKPL---VVSYTGLIQACLDSGNIQN 214 (455)
Q Consensus 140 g~~~~a~~~~~~m~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~ 214 (455)
|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..++ +.|..++ ..-.+. +...+..|+.+-
T Consensus 113 ~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll----~~g~~~~~~d~~g~Tp-L~~A~~~g~~ei 183 (413)
T PHA02875 113 KKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI----DHKACLDIEDCCGCTP-LIIAMAKGDIAI 183 (413)
T ss_pred CCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hcCCCCCCCCCCCCCH-HHHHHHcCCHHH
Confidence 6654 4455556665543211 112334445677766554443 4444332 112222 333455677665
Q ss_pred HHHHHHHHHhcCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 215 AAYIFNQMKNFCSPNLV---TCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 215 a~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
+..+++.- ..++.. ...+++...+..|+.+ +.+.+.+.|
T Consensus 184 v~~Ll~~g---a~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~g 225 (413)
T PHA02875 184 CKMLLDSG---ANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRG 225 (413)
T ss_pred HHHHHhCC---CCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCC
Confidence 54444332 222211 1123444344556654 455556666
No 445
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=39.76 E-value=1.8e+02 Score=23.52 Aligned_cols=19 Identities=11% Similarity=0.036 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHcCCCCc
Q 048235 177 CEEALMQMDKICKVANKPL 195 (455)
Q Consensus 177 ~~~a~~~~~~m~~~~~~~~ 195 (455)
.-.|.++++.+.+.+..++
T Consensus 41 hlSa~eI~~~L~~~~~~is 59 (169)
T PRK11639 41 AISAYDLLDLLREAEPQAK 59 (169)
T ss_pred CCCHHHHHHHHHhhCCCCC
Confidence 3334444444444443333
No 446
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=39.45 E-value=2.2e+02 Score=23.58 Aligned_cols=93 Identities=9% Similarity=0.008 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHH-HHHhcC--ChHHHHHHHHHHhhcCCCCChH--------
Q 048235 282 TMLDACAAEKRWDDLELVYKRMLHH--GLHFNAKRHLRMIL-DASRAG--KVELLEITWEHLARADRITPPA-------- 348 (455)
Q Consensus 282 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~-~~~~~g--~~~~a~~~~~~~~~~~~~~~~~-------- 348 (455)
...-...+.|++++|..-++++.+. .++--...|..+.. +++..+ .+-+|.-++..+...+...++.
T Consensus 34 ~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~~~~Y 113 (204)
T COG2178 34 GEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGVPPIAY 113 (204)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCCCHHHH
Confidence 3444556778888888887777641 11111123333333 233332 3556666666665443322221
Q ss_pred ---------hHHHHHHHHhhccchHHHHHHhhhcC
Q 048235 349 ---------LIKERFCNRLENKDYGSAISCLVSHP 374 (455)
Q Consensus 349 ---------~~~~~~~~~~~~~~~~~A~~~~~~~~ 374 (455)
.+...+...++.|++++|.+.++-|.
T Consensus 114 ilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 114 ILGLADAVGELRRHVLELLRKGSFEEAERFLKFME 148 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 01223333458899999999888664
No 447
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=39.37 E-value=3.7e+02 Score=26.08 Aligned_cols=278 Identities=13% Similarity=0.100 Sum_probs=137.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHH--HHHHHHHHhcC---------C---CCHHHHHHHHH
Q 048235 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLV--YEFFRKVQKSY---------I---PNALAYKVLVN 134 (455)
Q Consensus 69 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a--~~~~~~~~~~~---------~---~~~~~~~~li~ 134 (455)
..+.++..++++..+...|.......++..+..|.+.|..... .+-++.+.... . .....+....-
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aV 108 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAV 108 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhhe
Confidence 3577999999999999998887777788888888888875432 22333332110 0 11223333333
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHH---HHHHHcCC--------------
Q 048235 135 TLWREGKTDEAVSAVEDMERRGIVGSA-----ALYYDLARCLCSAGKCEEALMQM---DKICKVAN-------------- 192 (455)
Q Consensus 135 ~~~~~g~~~~a~~~~~~m~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~---~~m~~~~~-------------- 192 (455)
.|.....+..|+++...+...- .|-. .........+......++|+.++ .+|...+-
T Consensus 109 i~yh~~~~g~a~~~~~~lv~r~-e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~ 187 (696)
T KOG2471|consen 109 IFYHHEENGSAMQLSSNLVSRT-ESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLL 187 (696)
T ss_pred eeeeHhhcchHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhc
Confidence 3444455666666665554431 1100 00111233344455566665444 34432210
Q ss_pred ---CCcHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHH
Q 048235 193 ---KPLVVSYT------------GLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIM-VKAYLEHGLFEEAMKLFQEM 256 (455)
Q Consensus 193 ---~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m 256 (455)
.|....-. --+.+|....+...+..-.+.... ...|...+..| -..+.-.|++.+|.+++...
T Consensus 188 kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn-~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~s 266 (696)
T KOG2471|consen 188 KTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMN-IAQDSSMALLLKSQLEYAHGNHPKAMKLLLVS 266 (696)
T ss_pred ccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhh-hcCCCcHHHHHHHHHHHHhcchHHHHHHHHhc
Confidence 11111100 111222222222222222222111 11222222222 23445689999999877553
Q ss_pred HhcccccchhhccCCCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------cCCCCCH-----------HHH
Q 048235 257 AEDSNHINREYDKKGLVIPD---IYTFNTMLDACAAEKRWDDLELVYKRMLH-------HGLHFNA-----------KRH 315 (455)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------~~~~p~~-----------~~~ 315 (455)
--.. ...+.+.|. -..||.|.-.+.+.|.+..+..+|....+ .|++|.. .+|
T Consensus 267 ni~~-------~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilY 339 (696)
T KOG2471|consen 267 NIHK-------EAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILY 339 (696)
T ss_pred cccc-------ccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHH
Confidence 2111 000112221 12345555555666777777777766653 4655543 133
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHH
Q 048235 316 LRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNR 357 (455)
Q Consensus 316 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (455)
+. -..|...|+...|.+.|..........|. +|.++..++
T Consensus 340 Nc-G~~~Lh~grPl~AfqCf~~av~vfh~nPr-lWLRlAEcC 379 (696)
T KOG2471|consen 340 NC-GLLYLHSGRPLLAFQCFQKAVHVFHRNPR-LWLRLAECC 379 (696)
T ss_pred hh-hHHHHhcCCcHHHHHHHHHHHHHHhcCcH-HHHHHHHHH
Confidence 32 33468899999999999998877766664 344455443
No 448
>PRK12357 glutaminase; Reviewed
Probab=39.37 E-value=3e+02 Score=25.04 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=7.0
Q ss_pred CCCHhHHHHHHH
Q 048235 54 EPDIVVYNAVLN 65 (455)
Q Consensus 54 ~~~~~~~~~li~ 65 (455)
.|+-..||+++.
T Consensus 99 EPSG~~FNSi~~ 110 (326)
T PRK12357 99 EPTGDAFNSIIR 110 (326)
T ss_pred CCCCCCcchhhh
Confidence 566666666643
No 449
>PF13934 ELYS: Nuclear pore complex assembly
Probab=38.94 E-value=2.5e+02 Score=24.02 Aligned_cols=55 Identities=16% Similarity=0.027 Sum_probs=25.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCC
Q 048235 318 MILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPV 375 (455)
Q Consensus 318 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 375 (455)
++.++...|+.+.|..+++.+.. ..........+...+..+...+|..+.+..+.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~La~~~v~EAf~~~R~~~~ 168 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVALANGLVTEAFSFQRSYPD 168 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHHHHcCCHHHHHHHHHhCch
Confidence 44455555555655555555421 11111112233333455566666665555543
No 450
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.77 E-value=2.9e+02 Score=24.66 Aligned_cols=113 Identities=16% Similarity=0.129 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCc---
Q 048235 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMER----RGIVGSAALYYD-LARCLCSAGKCEEALMQMDKICKVANKPL--- 195 (455)
Q Consensus 124 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--- 195 (455)
....++..+...|++.++.+.+.++.++..+ .|.+.|...... |.-.|....-.++-++..+.|.+.|...+
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 3567888899999999999999988877654 466666543332 33334444446777788888888886543
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHH
Q 048235 196 -VVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVK 238 (455)
Q Consensus 196 -~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~ 238 (455)
-.+|--+. +....++.+|-.++-..... -.....+|...++
T Consensus 193 RyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vr 235 (412)
T COG5187 193 RYKVYKGIF--KMMRRNFKEAAILLSDILPTFESSELISYSRAVR 235 (412)
T ss_pred hHHHHHHHH--HHHHHhhHHHHHHHHHHhccccccccccHHHHHH
Confidence 22333222 23456788888877776543 2223334444433
No 451
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=37.83 E-value=3.5e+02 Score=25.38 Aligned_cols=57 Identities=25% Similarity=0.298 Sum_probs=41.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 048235 133 VNTLWREGKTDEAVSAVEDMERRGIVGSAA--LYYDLARCLC--SAGKCEEALMQMDKICKV 190 (455)
Q Consensus 133 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~--~~g~~~~a~~~~~~m~~~ 190 (455)
+..+.+.+++..|.++|+++... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33455789999999999999987 555544 4455555554 477889999999887665
No 452
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.80 E-value=2.9e+02 Score=24.53 Aligned_cols=201 Identities=8% Similarity=0.053 Sum_probs=99.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCCCcHHHHHHH
Q 048235 134 NTLWREGKTDEAVSAVEDMERRGIVGSAA-------LYYDLARCLCSAGKCEEALMQMDKI----CKVANKPLVVSYTGL 202 (455)
Q Consensus 134 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~m----~~~~~~~~~~~~~~l 202 (455)
+-..+.+++++|+..+.++...|+..+.. +...+...|...|+...-.++.... .+-.-+.......+|
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL 90 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL 90 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 33455567777777777777766655433 3334666666666655544443321 111111133444555
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhc-CC-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC
Q 048235 203 IQACLDS-GNIQNAAYIFNQMKNF-CS-----PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275 (455)
Q Consensus 203 i~~~~~~-~~~~~a~~~~~~~~~~-~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p 275 (455)
+..+... ..++.-..+.....+- .+ .-...-.-++..+.+.|.+.+|+.+...+...- ++..-+|
T Consensus 91 iekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~El--------Kk~DDK~ 162 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHEL--------KKYDDKI 162 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH--------HhhcCcc
Confidence 5554433 3355555555444321 00 111222457888899999999987765554321 0001345
Q ss_pred cHHHHHHHH-HHHHHcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHhhcC
Q 048235 276 DIYTFNTML-DACAAEKRWDDLELVYKRMLH----HGLHFNAKRHLRMILDA--SRAGKVELLEITWEHLARAD 342 (455)
Q Consensus 276 ~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~----~~~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~ 342 (455)
+..+...+= .+|-..+++.++..-+...+. .-.+|-...-..++.+. +.-.++..|..+|-+..+..
T Consensus 163 ~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 163 NLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred ceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 544433332 245555555555444444332 11233333333445543 34445666776666555433
No 453
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=37.19 E-value=69 Score=28.92 Aligned_cols=76 Identities=11% Similarity=0.072 Sum_probs=48.3
Q ss_pred hhccchHHHHHHhhhcCC--CCCccccHHHHHHHHhhhcccCCcchHHHHHHHhccccccccCCCchhHHHHHHhHHhh
Q 048235 358 LENKDYGSAISCLVSHPV--SGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDF 434 (455)
Q Consensus 358 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 434 (455)
....++..|...+.+... .++++.+.+.|..-..+....+....++.-+.+.+. ++|.+.-+|..-+..+.+..+.
T Consensus 92 fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~-~~P~h~Ka~~R~Akc~~eLe~~ 169 (390)
T KOG0551|consen 92 FKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK-LKPTHLKAYIRGAKCLLELERF 169 (390)
T ss_pred HHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhhhhhhHHHHHHHHH
Confidence 345566666666665432 223334556666666655555666677777766666 8888888887777777777773
No 454
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=36.93 E-value=1.5e+02 Score=20.93 Aligned_cols=61 Identities=13% Similarity=0.015 Sum_probs=36.1
Q ss_pred HHHcCCHHHHHHHHHHHHH----cCCCCC--HHHH--HHHHHHHHhcCChHHHHHHHHHHhhcCCCCCh
Q 048235 287 CAAEKRWDDLELVYKRMLH----HGLHFN--AKRH--LRMILDASRAGKVELLEITWEHLARADRITPP 347 (455)
Q Consensus 287 ~~~~~~~~~a~~~~~~m~~----~~~~p~--~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 347 (455)
..+.|++.+|.+.+.+..+ .+.... ...+ ..+.......|++++|...+++.++......+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 4567888888666665554 222221 1122 22333457789999999988887665544444
No 455
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=36.60 E-value=2.6e+02 Score=23.63 Aligned_cols=69 Identities=7% Similarity=0.016 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCC-------HHHHHHHHHHHHHcCCC----CCHHHHHHHHHH-HHhcCChHHHHHHHHHHhhcCCCCC
Q 048235 279 TFNTMLDACAAEKR-------WDDLELVYKRMLHHGLH----FNAKRHLRMILD-ASRAGKVELLEITWEHLARADRITP 346 (455)
Q Consensus 279 ~~~~li~~~~~~~~-------~~~a~~~~~~m~~~~~~----p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~ 346 (455)
.+..+.-.|...|+ ...|.+.|.+..+..-. .+..+...|+.- ..+.|+.++|.+.|..+........
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 34444455666666 34566666666653222 223344444444 4889999999999999988876666
Q ss_pred h
Q 048235 347 P 347 (455)
Q Consensus 347 ~ 347 (455)
+
T Consensus 200 ~ 200 (214)
T PF09986_consen 200 E 200 (214)
T ss_pred c
Confidence 3
No 456
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.43 E-value=5.5e+02 Score=27.24 Aligned_cols=39 Identities=8% Similarity=0.017 Sum_probs=22.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 048235 170 CLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD 208 (455)
Q Consensus 170 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 208 (455)
.|......+-+..+++.+....-.++....+.++..|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 345556666666777766655544455555555555553
No 457
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=36.41 E-value=1.2e+02 Score=19.61 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=8.0
Q ss_pred hcCCHHHHHHHHHHHHH
Q 048235 173 SAGKCEEALMQMDKICK 189 (455)
Q Consensus 173 ~~g~~~~a~~~~~~m~~ 189 (455)
..|++-+|-++++.+-.
T Consensus 11 n~g~f~EaHEvlE~~W~ 27 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWK 27 (62)
T ss_dssp HTT-HHHHHHHHHHHCC
T ss_pred cCCCHHHhHHHHHHHHH
Confidence 34555555555555443
No 458
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=36.15 E-value=1.2e+02 Score=20.31 Aligned_cols=31 Identities=10% Similarity=0.000 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 048235 212 IQNAAYIFNQMKNFCSPNLVTCNIMVKAYLE 242 (455)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 242 (455)
.+.|..++..++...+.++..||++...+.+
T Consensus 13 tEmA~~mL~DLr~dekRsPQLYnAI~k~L~R 43 (82)
T PF11123_consen 13 TEMAQQMLADLRDDEKRSPQLYNAIGKLLDR 43 (82)
T ss_pred HHHHHHHHHHhcchhhcChHHHHHHHHHHHH
Confidence 4455555555554444555556655554443
No 459
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.97 E-value=2.9e+02 Score=23.87 Aligned_cols=84 Identities=7% Similarity=0.130 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHhc---CCCCHHH---HHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHH-
Q 048235 210 GNIQNAAYIFNQMKNF---CSPNLVT---CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT- 282 (455)
Q Consensus 210 ~~~~~a~~~~~~~~~~---~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~- 282 (455)
.++++|+..|+..-+- ...+... +.-+..--+..+++.+|+++|++..... +..+..-|..
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s------------~~n~LLKys~K 195 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS------------LDNNLLKYSAK 195 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------ccchHHHhHHH
Confidence 4566666666665432 1122222 2222333356789999999999988765 3333333322
Q ss_pred --HH-HHHHHc--CCHHHHHHHHHHHHH
Q 048235 283 --ML-DACAAE--KRWDDLELVYKRMLH 305 (455)
Q Consensus 283 --li-~~~~~~--~~~~~a~~~~~~m~~ 305 (455)
++ .++|+. .+.-.+...+++..+
T Consensus 196 dyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 196 DYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 22 223332 455556666666666
No 460
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=35.87 E-value=1.6e+02 Score=20.80 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048235 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRG 156 (455)
Q Consensus 123 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 156 (455)
+.|...-..+...+...|++++|++.+-++.+.+
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4455555555555666666666666555555543
No 461
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=35.84 E-value=1.1e+02 Score=22.59 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=19.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048235 133 VNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175 (455)
Q Consensus 133 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 175 (455)
+..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 3333333444455555555555544444444333344444333
No 462
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=35.69 E-value=92 Score=29.62 Aligned_cols=106 Identities=13% Similarity=0.097 Sum_probs=60.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh
Q 048235 168 ARCLCSAGKCEEALMQMDKICKVANKPL-VVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLF 246 (455)
Q Consensus 168 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 246 (455)
+..+...++++.|..++.+..+.. |+ ...|..=..++.+.+++..|..=+....+..+-....|-.=..++...+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 344455677777777777777754 33 333333336677777777777766666553322222333333344444556
Q ss_pred hHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHH
Q 048235 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289 (455)
Q Consensus 247 ~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 289 (455)
.+|+..|+.... +.|+..-....+.-|-.
T Consensus 89 ~~A~~~l~~~~~--------------l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 89 KKALLDLEKVKK--------------LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHhhh--------------cCcCcHHHHHHHHHHHH
Confidence 666666666655 55776666666655544
No 463
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=35.69 E-value=1.9e+02 Score=24.38 Aligned_cols=90 Identities=13% Similarity=0.157 Sum_probs=57.4
Q ss_pred ChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCC---------HHHHHHHHHHHHHcCCC-CC
Q 048235 22 HIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQ---------WEGAFWVLQQLKQQGQK-PS 91 (455)
Q Consensus 22 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------~~~a~~~~~~m~~~~~~-p~ 91 (455)
..+.|..++..|--. ..+.|..+-.....-|..+..+|.+.|- .+.-.++++-.++.|++ .=
T Consensus 136 ~vetAiaml~dmG~~--------SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kvi 207 (236)
T TIGR03581 136 PIETAIAMLKDMGGS--------SVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVI 207 (236)
T ss_pred eHHHHHHHHHHcCCC--------eeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeec
Confidence 356778888777642 3445555556677888889999988874 34455666666666654 23
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 048235 92 ATTYGLVMEVMLACGKYNLVYEFFRKVQ 119 (455)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 119 (455)
.+.|+++|+--.-.-+.+++.+++..++
T Consensus 208 PHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 208 PHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccceeccccccCCCCHHHHHHHHHHhh
Confidence 5666666654444445666776666553
No 464
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=35.43 E-value=3.3e+02 Score=24.48 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHH
Q 048235 196 VVSYTGLIQACLDSGNIQNAA 216 (455)
Q Consensus 196 ~~~~~~li~~~~~~~~~~~a~ 216 (455)
..+|..|+.+++..|+.+..+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 456788889999988877554
No 465
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=34.73 E-value=1.9e+02 Score=21.35 Aligned_cols=20 Identities=5% Similarity=0.129 Sum_probs=8.7
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 048235 172 CSAGKCEEALMQMDKICKVA 191 (455)
Q Consensus 172 ~~~g~~~~a~~~~~~m~~~~ 191 (455)
.+.|-.+++...+.++..+|
T Consensus 80 ~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 80 WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHCT-HHHHHHHHHHHCT-S
T ss_pred HhhccHHHHHHHHHHHHhCC
Confidence 34555555555554444443
No 466
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=34.26 E-value=1.6e+02 Score=20.56 Aligned_cols=65 Identities=9% Similarity=0.171 Sum_probs=44.3
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 048235 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121 (455)
Q Consensus 55 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 121 (455)
|....|..-++...... .+++ ++|+-....|+..|...|.++++...-+=..+...++++.|...
T Consensus 8 ~~~~~~k~~~~rk~~Ls-~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 8 PTAQVYKYSLRRKKVLS-AEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred ChHHHHHHHHHHHhccC-HHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 34555555553322222 2332 78888888999999999999998777777777788888877644
No 467
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=33.70 E-value=3.6e+02 Score=24.30 Aligned_cols=68 Identities=13% Similarity=0.222 Sum_probs=38.7
Q ss_pred cCCHHHHHHHHH-HHHHcCCCCcH----HHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChh
Q 048235 174 AGKCEEALMQMD-KICKVANKPLV----VSYTGLIQACLDSGN-IQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFE 247 (455)
Q Consensus 174 ~g~~~~a~~~~~-~m~~~~~~~~~----~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 247 (455)
...+++...... +|.+.++ |+. .+|..++++---.++ -.-|.+.++.++ +|.-|+.+++..|+.+
T Consensus 268 e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrhlK--------~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 268 EDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRHLK--------QYAPLLAAFCSQGQSE 338 (412)
T ss_pred CCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHHH--------hhhHHHHHHhcCChHH
Confidence 344555544444 4666654 453 346666655332221 223444554444 6899999999999987
Q ss_pred HHH
Q 048235 248 EAM 250 (455)
Q Consensus 248 ~a~ 250 (455)
-.+
T Consensus 339 L~L 341 (412)
T KOG2297|consen 339 LEL 341 (412)
T ss_pred HHH
Confidence 543
No 468
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=33.46 E-value=3.2e+02 Score=23.63 Aligned_cols=38 Identities=11% Similarity=0.140 Sum_probs=18.9
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 048235 79 VLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKV 118 (455)
Q Consensus 79 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 118 (455)
+.+-....++.-+......++ +...|+...|...++.-
T Consensus 181 l~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst 218 (333)
T KOG0991|consen 181 LLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQST 218 (333)
T ss_pred HHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHH
Confidence 333334445554555444443 34566666665555543
No 469
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.35 E-value=4.8e+02 Score=25.66 Aligned_cols=36 Identities=11% Similarity=0.056 Sum_probs=26.2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 048235 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311 (455)
Q Consensus 275 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 311 (455)
+.......+++++ ..++.++|..+++++...|..|.
T Consensus 240 ~~~~~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 240 PPQERLRGIAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred CcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 3444455566666 45889999999999999887654
No 470
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=33.16 E-value=4e+02 Score=25.15 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHH
Q 048235 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQ--GQKPS-ATTYGLVMEVMLACGKYNLVYEFFRKV 118 (455)
Q Consensus 58 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 118 (455)
.+.-.|++.+.-.|+++...+.++.|.+. |-.|. ..|| .+.-+|.-.+++.+|.+.|-.+
T Consensus 236 fsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY-~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 236 FSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTY-QVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEee-ehhHHHHHHHHHHHHHHHHHHH
Confidence 34444556666667766666666666542 22232 2222 2333455556666666666554
No 471
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.10 E-value=4.3e+02 Score=25.07 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=11.9
Q ss_pred cCChhHHHHHHHHHHhcc
Q 048235 243 HGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 243 ~~~~~~a~~~~~~m~~~~ 260 (455)
.++.+.|+.++..|.+.|
T Consensus 243 gsd~~aal~~l~~~l~~G 260 (413)
T PRK13342 243 GSDPDAALYYLARMLEAG 260 (413)
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 356666777777777666
No 472
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=32.95 E-value=3.3e+02 Score=23.60 Aligned_cols=68 Identities=13% Similarity=0.095 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------------C------------CCHHHHHHHHHHHHhcCChH
Q 048235 275 PDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL-------------H------------FNAKRHLRMILDASRAGKVE 329 (455)
Q Consensus 275 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------------~------------p~~~~~~~ll~~~~~~g~~~ 329 (455)
.+..+...+..++...|+...+.++++.+.+.-. . .+..+-...+.++.+.++.+
T Consensus 130 ~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~~~~~ 209 (246)
T PF07678_consen 130 QDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKRGDLE 209 (246)
T ss_dssp SSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHHTCHH
T ss_pred CCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhcccHH
Confidence 5666666666677777777888888888864210 0 01233333445566668888
Q ss_pred HHHHHHHHHhhcC
Q 048235 330 LLEITWEHLARAD 342 (455)
Q Consensus 330 ~a~~~~~~~~~~~ 342 (455)
.+..+.+.+.+..
T Consensus 210 ~~~~iv~WL~~qr 222 (246)
T PF07678_consen 210 EASPIVRWLISQR 222 (246)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhc
Confidence 8888888886643
No 473
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=32.75 E-value=1e+02 Score=23.03 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=19.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048235 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172 (455)
Q Consensus 131 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 172 (455)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+.
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~ 53 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLE 53 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHH
Confidence 344444444445555556655555554444443333333333
No 474
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.74 E-value=4.6e+02 Score=26.43 Aligned_cols=91 Identities=15% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 048235 168 ARCLCSAGKCEEALMQMDKICKVANKPL-----VVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLE 242 (455)
Q Consensus 168 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 242 (455)
.....+..++..+.+.|..-.+.-+.-. ......+--+|.+..+.|.|.+++++..+..+.++.+---+..+...
T Consensus 361 A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~ 440 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA 440 (872)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Q ss_pred cCChhHHHHHHHHHHh
Q 048235 243 HGLFEEAMKLFQEMAE 258 (455)
Q Consensus 243 ~~~~~~a~~~~~~m~~ 258 (455)
.|.-++|+........
T Consensus 441 E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 441 EDKSEEALTCLQKIKS 456 (872)
T ss_pred hcchHHHHHHHHHHHh
No 475
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.47 E-value=5.5e+02 Score=27.07 Aligned_cols=100 Identities=15% Similarity=0.071 Sum_probs=58.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh
Q 048235 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLF 246 (455)
Q Consensus 167 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 246 (455)
+|..+.+.|.++-|+.+.+ |..+- ...+..+|+++.|++.-..+ .+..+|..|.......|+.
T Consensus 626 iIaYLqKkgypeiAL~FVk---------D~~tR---F~LaLe~gnle~ale~akkl-----dd~d~w~rLge~Al~qgn~ 688 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVK---------DERTR---FELALECGNLEVALEAAKKL-----DDKDVWERLGEEALRQGNH 688 (1202)
T ss_pred HHHHHHhcCCcceeeeeec---------Ccchh---eeeehhcCCHHHHHHHHHhc-----CcHHHHHHHHHHHHHhcch
Confidence 4555556666666655432 22211 12345667777777666655 5566777777777777777
Q ss_pred hHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048235 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRML 304 (455)
Q Consensus 247 ~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 304 (455)
+-|+..|++.... ..|--.|.-.|+.++..++.+.+.
T Consensus 689 ~IaEm~yQ~~knf---------------------ekLsfLYliTgn~eKL~Km~~iae 725 (1202)
T KOG0292|consen 689 QIAEMCYQRTKNF---------------------EKLSFLYLITGNLEKLSKMMKIAE 725 (1202)
T ss_pred HHHHHHHHHhhhh---------------------hheeEEEEEeCCHHHHHHHHHHHH
Confidence 7777777765542 233334555666666655555443
No 476
>PRK09462 fur ferric uptake regulator; Provisional
Probab=32.11 E-value=2.5e+02 Score=21.97 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 048235 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVE 329 (455)
Q Consensus 292 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 329 (455)
..-.|.++++.+.+.+...+..|...-|..+...|-+.
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 45567777777776665556666666666666666543
No 477
>PRK13342 recombination factor protein RarA; Reviewed
Probab=32.11 E-value=4.5e+02 Score=24.96 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCc
Q 048235 175 GKCEEALMQMDKICKVANKPL 195 (455)
Q Consensus 175 g~~~~a~~~~~~m~~~~~~~~ 195 (455)
.+.+.|+..+..|.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 444444444445444444433
No 478
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=31.87 E-value=3.6e+02 Score=23.82 Aligned_cols=176 Identities=14% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 048235 12 SIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVR----RKQWEGAFWVLQQLKQQG 87 (455)
Q Consensus 12 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~ 87 (455)
..........+..+|.++|..+.. .-.......|...|.. ..+..+|...|++..+.|
T Consensus 82 ~y~~g~gv~~~~~~A~~~~~~~a~------------------~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 82 MYGAGKGVSRDKTKAADWYRCAAA------------------DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG 143 (292)
T ss_pred HHHhccCccccHHHHHHHHHHHhh------------------cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC
Q ss_pred CCCCHhhHHHHHHHHHHc-----CChh--HHHHHHHHHHhcCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHHCC
Q 048235 88 QKPSATTYGLVMEVMLAC-----GKYN--LVYEFFRKVQKSYIPNALAYKVLVNTL----WREGKTDEAVSAVEDMERRG 156 (455)
Q Consensus 88 ~~p~~~~~~~l~~~~~~~-----~~~~--~a~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~m~~~~ 156 (455)
..+...+...+-..|... -..+ .|...+.+....+ +......+...| .-..+..+|...|....+.|
T Consensus 144 ~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 144 NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Q ss_pred CCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 048235 157 IVGSAALYYDLARCLCSAG---------------KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211 (455)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 211 (455)
. ......+. .+...| +...|...+......+..........+-......+.
T Consensus 222 ~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (292)
T COG0790 222 D---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRALKIGLSARGS 287 (292)
T ss_pred C---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhhCcCC
No 479
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=31.78 E-value=7.4e+02 Score=27.38 Aligned_cols=159 Identities=14% Similarity=0.117 Sum_probs=94.3
Q ss_pred HHhcCChHHHHH------HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCC--CCcHHHHHHH
Q 048235 136 LWREGKTDEAVS------AVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC-----KVAN--KPLVVSYTGL 202 (455)
Q Consensus 136 ~~~~g~~~~a~~------~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~--~~~~~~~~~l 202 (455)
....|.+.++.+ ++......-.+.....|..+...+-+.|+.++|+..-.... ..|. .-+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344566666665 44432222123345667778888889999999987655431 1122 2235556667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCC
Q 048235 203 IQACLDSGNIQNAAYIFNQMKNF--------CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI 274 (455)
Q Consensus 203 i~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 274 (455)
...+...++...|...+.+.... .||...+++.+-..+...+.++.|.++.+.+...... ......-
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~-----v~g~~~l 1096 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK-----VLGPKEL 1096 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh-----hcCccch
Confidence 66677777888888888776542 3444445555544455568899999999888774310 0000012
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHH
Q 048235 275 PDIYTFNTMLDACAAEKRWDDLELV 299 (455)
Q Consensus 275 p~~~~~~~li~~~~~~~~~~~a~~~ 299 (455)
++..++..+.+.+...+++..|...
T Consensus 1097 ~~~~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1097 ETALSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 3456677776666666666555444
No 480
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=31.60 E-value=4.7e+02 Score=25.03 Aligned_cols=233 Identities=9% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 048235 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWR 138 (455)
Q Consensus 59 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 138 (455)
....+|+-|...|+..+..+.++++-.....|-...+.+-+..=.+...-+.|-.++..+.-...++..+-+.+...+-.
T Consensus 347 ~~~~IIqEYFlsgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLes 426 (645)
T KOG0403|consen 347 DLTPIIQEYFLSGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLES 426 (645)
T ss_pred hhHHHHHHHHhcCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhc
Q ss_pred cCC----hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH------HHHcCCCCcHHHHHHHHHHHHh
Q 048235 139 EGK----TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK------ICKVANKPLVVSYTGLIQACLD 208 (455)
Q Consensus 139 ~g~----~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~------m~~~~~~~~~~~~~~li~~~~~ 208 (455)
..+ ...|-+.+.....+-+.-+.-.=..+=....+..-...+.+.++. |...|-+ +++.+..
T Consensus 427 aedtALD~p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeR--------llr~WGg 498 (645)
T KOG0403|consen 427 AEDTALDIPRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGER--------LLRVWGG 498 (645)
T ss_pred chhhhccccccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccc--------hhheecC
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHH
Q 048235 209 SGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288 (455)
Q Consensus 209 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 288 (455)
-|--......-+++.. |+.-|...|+..+|.+.++++--- .--....+.+++.+.-
T Consensus 499 GG~g~sVed~kdkI~~-----------LLeEY~~~GdisEA~~CikeLgmP-------------fFhHEvVkkAlVm~mE 554 (645)
T KOG0403|consen 499 GGGGWSVEDAKDKIDM-----------LLEEYELSGDISEACHCIKELGMP-------------FFHHEVVKKALVMVME 554 (645)
T ss_pred CCCcchHHHHHHHHHH-----------HHHHHHhccchHHHHHHHHHhCCC-------------cchHHHHHHHHHHHHH
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048235 289 AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327 (455)
Q Consensus 289 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 327 (455)
+.|+-...+.+++..-+.|+- |.+.+-.+|.|-.+
T Consensus 555 kk~d~t~~ldLLk~cf~sglI----T~nQMtkGf~RV~d 589 (645)
T KOG0403|consen 555 KKGDSTMILDLLKECFKSGLI----TTNQMTKGFERVYD 589 (645)
T ss_pred hcCcHHHHHHHHHHHHhcCce----eHHHhhhhhhhhhc
No 481
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=31.58 E-value=2.2e+02 Score=21.15 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=15.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 048235 132 LVNTLWREGKTDEAVSAVEDMERRG 156 (455)
Q Consensus 132 li~~~~~~g~~~~a~~~~~~m~~~~ 156 (455)
+++.+.++...++|+++++-|.++|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4455555666666666666666665
No 482
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=31.43 E-value=2.3e+02 Score=21.46 Aligned_cols=46 Identities=4% Similarity=0.070 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048235 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303 (455)
Q Consensus 247 ~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 303 (455)
+.+.++|..|...|+ ..--...|......+...|++++|.++|+.-
T Consensus 80 ~~~~~if~~l~~~~I-----------G~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 80 SDPREIFKFLYSKGI-----------GTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp SHHHHHHHHHHHHTT-----------STTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCc-----------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 388899999998884 2345777888888888999999999988753
No 483
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=31.32 E-value=1.3e+02 Score=28.31 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=48.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048235 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ 85 (455)
Q Consensus 9 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 85 (455)
+.-.+++.++-.|++..|+++++.+.-.. ..+|..-..-.+.+|--+.-+|.-.+++..|.++|....-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~--------~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNK--------KGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCccc--------chhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788889999999999999886421 1122233344566777777888888888888888877653
No 484
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=31.04 E-value=1.7e+02 Score=22.66 Aligned_cols=51 Identities=6% Similarity=-0.099 Sum_probs=26.1
Q ss_pred HHcCCHHHHHHHHHHHHHc--CCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHH
Q 048235 288 AAEKRWDDLELVYKRMLHH--GLHFNAK--RHLRMILDASRAGKVELLEITWEHL 338 (455)
Q Consensus 288 ~~~~~~~~a~~~~~~m~~~--~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~ 338 (455)
...|+++.|.++.++.... ...++.. .+..-..-+.+.|+..+|.++.+.-
T Consensus 12 I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~ 66 (145)
T PF10607_consen 12 ILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKH 66 (145)
T ss_pred HHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3778888888777765421 1112221 1111111135567777777776663
No 485
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.73 E-value=72 Score=28.93 Aligned_cols=119 Identities=14% Similarity=0.114 Sum_probs=76.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcH-HHHHHHHHH
Q 048235 208 DSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI-YTFNTMLDA 286 (455)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~-~~~~~li~~ 286 (455)
..|.++.|++.|.......++....|..-.+++.+.+....|++=+...++.+ ||. .-|-.=-.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--------------~Dsa~~ykfrg~A 191 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--------------PDSAKGYKFRGYA 191 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccC--------------cccccccchhhHH
Confidence 45778888888888777677777777777788888888888888887777743 543 334433445
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 048235 287 CAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARAD 342 (455)
Q Consensus 287 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 342 (455)
....|+|++|...|....+.++.+....+.. ...-+++..++-...+++..+..
T Consensus 192 ~rllg~~e~aa~dl~~a~kld~dE~~~a~lK--eV~p~a~ki~e~~~k~er~~~e~ 245 (377)
T KOG1308|consen 192 ERLLGNWEEAAHDLALACKLDYDEANSATLK--EVFPNAGKIEEHRRKYERAREER 245 (377)
T ss_pred HHHhhchHHHHHHHHHHHhccccHHHHHHHH--HhccchhhhhhchhHHHHHHHHh
Confidence 5567888888888888888776654332221 12334444444444444444333
No 486
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.58 E-value=4e+02 Score=23.85 Aligned_cols=115 Identities=14% Similarity=0.137 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CCHHHHHHHHHHHH
Q 048235 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI--PNALAYKVLVNTLW 137 (455)
Q Consensus 60 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~ 137 (455)
--.++..+.+.++....++.+..+.. ...-...++.....|++..|+++.......-. ........|-.
T Consensus 101 ~L~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~--- 171 (291)
T PF10475_consen 101 GLEILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSS--- 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhH---
Confidence 33455556666666666666666652 33344455666688888888888877654311 11222222221
Q ss_pred hcCChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048235 138 REGKTDEAVSAVEDMERR-----GIVGSAALYYDLARCLCSAGKCEEALMQMDK 186 (455)
Q Consensus 138 ~~g~~~~a~~~~~~m~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 186 (455)
++++.....+++.+. -..-|+..|..+..+|.-.|+...+.+-+..
T Consensus 172 ---~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 172 ---QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 223333333333221 1145777888888888888877766544433
No 487
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=29.81 E-value=4.1e+02 Score=25.10 Aligned_cols=60 Identities=12% Similarity=0.100 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048235 128 AYKVLVNTLWREGKTDEAVSAVEDMERR--GIVGS-AALYYDLARCLCSAGKCEEALMQMDKIC 188 (455)
Q Consensus 128 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 188 (455)
+.--|++...-.|+.....+.++.|.+. |..|. ..|| -+.-+|.-.+++.+|.+.|-...
T Consensus 237 sL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY-~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTY-QVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEee-ehhHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777778877777777777653 33333 2333 35667777788888888887654
No 488
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=29.58 E-value=4.1e+02 Score=23.73 Aligned_cols=101 Identities=7% Similarity=0.023 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048235 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF-NTMLDACAAEKRWDDLELVYKRMLHHGL 308 (455)
Q Consensus 230 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~ 308 (455)
...+..+..-|++.++.+.+.++..+..+.. ...+.+.|...- -.|.-.|....-+++-++..+.|.+.|-
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a--------~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDA--------MSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--------HhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 5567788889999999999988877665543 111144444322 2223345555557888888999999887
Q ss_pred CCCHH----HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048235 309 HFNAK----RHLRMILDASRAGKVELLEITWEHLAR 340 (455)
Q Consensus 309 ~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~ 340 (455)
.++.. +|..+. +....++.+|-.++-..+.
T Consensus 187 DWeRrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 187 DWERRNRYKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred CHHhhhhHHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 76653 332222 3445667787777766653
No 489
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.44 E-value=7.9e+02 Score=26.98 Aligned_cols=124 Identities=8% Similarity=0.042 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCC
Q 048235 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPN----LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKG 271 (455)
Q Consensus 196 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 271 (455)
.+-|..+++.+-..+..+.+.++-....+..+++ ..+++++.+.....|.+-+|...+-.
T Consensus 983 lhYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~---------------- 1046 (1480)
T KOG4521|consen 983 LHYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR---------------- 1046 (1480)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc----------------
Confidence 4557888888888888888888877776654333 34577777888888888777654432
Q ss_pred CCCCcH----HHHHHHHHHHHHcCCHHH------------HHH-HHHHHHHcCCCCCHHHHHHHHHHH-HhcCChHHHHH
Q 048235 272 LVIPDI----YTFNTMLDACAAEKRWDD------------LEL-VYKRMLHHGLHFNAKRHLRMILDA-SRAGKVELLEI 333 (455)
Q Consensus 272 ~~~p~~----~~~~~li~~~~~~~~~~~------------a~~-~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~a~~ 333 (455)
.||. .+...++-.++.+|.++. ... +++..-+. .......|.-++-+| ...+++.+|-.
T Consensus 1047 --npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs-~~~mk~nyYelLYAfh~~RhN~Rkaat 1123 (1480)
T KOG4521|consen 1047 --NPDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARS-SPSMKKNYYELLYAFHVARHNFRKAAT 1123 (1480)
T ss_pred --CCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhc-CccccccHHHHHHHHHHhhcchhHHHH
Confidence 2443 456667777777776543 333 22222221 222233455666665 77788777654
Q ss_pred -HHHHH
Q 048235 334 -TWEHL 338 (455)
Q Consensus 334 -~~~~~ 338 (455)
+|+..
T Consensus 1124 vMYEya 1129 (1480)
T KOG4521|consen 1124 VMYEYA 1129 (1480)
T ss_pred HHHHHH
Confidence 45543
No 490
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=29.17 E-value=4e+02 Score=23.41 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048235 127 LAYKVLVNTLWREGKTDEAVSAVEDME 153 (455)
Q Consensus 127 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 153 (455)
.....++..+.+.+....|..+.+.+.
T Consensus 83 l~L~~iL~~lL~~~~~~~a~~i~~~y~ 109 (258)
T PF07064_consen 83 LFLHHILRHLLRRNLDEEALEIASKYR 109 (258)
T ss_pred echHHHHHHHHhcCCcHHHHHHHHHhc
Confidence 344556666666666666666666654
No 491
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=29.14 E-value=4.9e+02 Score=24.43 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=32.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHh--hHHHHHHHHH--HcCChhHHHHHHHHHHh
Q 048235 66 ACVRRKQWEGAFWVLQQLKQQGQKPSAT--TYGLVMEVML--ACGKYNLVYEFFRKVQK 120 (455)
Q Consensus 66 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 120 (455)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-+++.|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344677888888888888776 554444 3333444443 34455667777776654
No 492
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=28.55 E-value=4e+02 Score=23.24 Aligned_cols=119 Identities=12% Similarity=0.120 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHH
Q 048235 228 PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR--WDDLELVYKRMLH 305 (455)
Q Consensus 228 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~ 305 (455)
|....-..++...-+....++...+++.+.... ...+..|+......++.+++..|. +..+..++++..+
T Consensus 9 P~~~~a~~l~~~ir~k~~~eei~~~l~~i~~~~--------~~~~~~~~~~~i~v~~q~ll~~GSkS~SH~~~~lery~~ 80 (253)
T PF09090_consen 9 PFHALAQKLLDLIRKKAPPEEISELLEEIEEPA--------EEHGSDFDKFVIDVFVQCLLHIGSKSFSHVLSALERYKE 80 (253)
T ss_dssp TTHHHHHHHHHHHHTT--HHHHHHHHTTS--------------------HHHHHHHHHHHHHHTTTSHHHHHHHHHHTHH
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHhccccc--------cccccchhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q ss_pred --cCC-CCCHHHHHHHHHHH--HhcCChHHHHHHHHHHhhcCCCCChHhHHHHH
Q 048235 306 --HGL-HFNAKRHLRMILDA--SRAGKVELLEITWEHLARADRITPPALIKERF 354 (455)
Q Consensus 306 --~~~-~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 354 (455)
..+ .++...-..++.+. .-..+.+-+.-+.++|+.-+-+.|..++..++
T Consensus 81 ~Lk~l~~~~~~~q~~il~~v~~~W~~~~q~~~li~dkll~~~ii~~~~Vv~w~f 134 (253)
T PF09090_consen 81 VLKELEAESEEAQFWILDAVFRFWKNNPQMGFLIIDKLLNYGIISPSAVVNWVF 134 (253)
T ss_dssp HHHHH-TSSHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTTSS-HHHHHHHHT
T ss_pred HHHHhccCChHHHHHHHHHHHHHHhcCCceehHHHHHHHhcCCCCHHHHHHHHc
No 493
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=27.90 E-value=2.4e+02 Score=20.53 Aligned_cols=18 Identities=11% Similarity=0.298 Sum_probs=7.6
Q ss_pred HHHHcCChhHHHHHHHHH
Q 048235 101 VMLACGKYNLVYEFFRKV 118 (455)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~ 118 (455)
-|...++.++|...+.++
T Consensus 11 ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 11 EYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHT-HHHHHHHHHHT
T ss_pred HHhcCCCHHHHHHHHHHh
Confidence 344444444444444443
No 494
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=27.72 E-value=2.5e+02 Score=20.63 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048235 127 LAYKVLVNTLWREGKTDEAVSAVEDMER 154 (455)
Q Consensus 127 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 154 (455)
.-|..|+..|...|..++|++++.++.+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4577888888888888888888888776
No 495
>PRK09857 putative transposase; Provisional
Probab=27.66 E-value=4.5e+02 Score=23.57 Aligned_cols=62 Identities=13% Similarity=0.169 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 199 YTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 199 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
+..++......++.++..++++.+.+..+.......++..-+.+.|.-+++.++.++|+..|
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g 270 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESG 270 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44555555566777667777777665444444444556666666677677888889998888
No 496
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=27.42 E-value=4.9e+02 Score=23.93 Aligned_cols=65 Identities=8% Similarity=0.034 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHH
Q 048235 212 IQNAAYIFNQMKNFCS---PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA 288 (455)
Q Consensus 212 ~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 288 (455)
.+++..++..+...++ .-..-|.++++.....|.++.++.+|++++..| ..|-...-..++..+-
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~ag------------AqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAG------------AQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC------------CChHHHHHHHHHHHHH
Confidence 3455556665544322 223468889999999999999999999999999 7787666666666654
No 497
>PRK14700 recombination factor protein RarA; Provisional
Probab=27.04 E-value=4.7e+02 Score=23.54 Aligned_cols=118 Identities=8% Similarity=-0.012 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHH
Q 048235 107 KYNLVYEFFRKVQKSYIPNALAYKVLVNTLWRE---GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG-----KCE 178 (455)
Q Consensus 107 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-----~~~ 178 (455)
..+.+.++..+-....-.+......+++++.+. .|.+.|+-++-.|.+.|..|....-..++.++-.-| -..
T Consensus 104 t~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~ 183 (300)
T PRK14700 104 NKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALR 183 (300)
T ss_pred CHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHH
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048235 179 EALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224 (455)
Q Consensus 179 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 224 (455)
.|...++.....|.+--.......+-.++.+-+...+...+....+
T Consensus 184 ~a~aa~~A~~~iG~PEa~i~La~aviyLA~aPKSNs~y~A~~~A~~ 229 (300)
T PRK14700 184 VAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKSNACYKALAQAQQ 229 (300)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
No 498
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=26.92 E-value=78 Score=20.59 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=18.2
Q ss_pred cCChHHHHHHHHHHhhcCCCCChH
Q 048235 325 AGKVELLEITWEHLARADRITPPA 348 (455)
Q Consensus 325 ~g~~~~a~~~~~~~~~~~~~~~~~ 348 (455)
.=+++.|...|.++...+.+|+++
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 446788888888888878777764
No 499
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.55 E-value=7.8e+02 Score=25.95 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=31.4
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048235 15 VTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDI--VVYNAVLNACVRRKQWEGAFWVLQQLK 84 (455)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~ 84 (455)
..|...|+++.|++.-+. +|+. .++..-...|.+.+++..|-++|.++.
T Consensus 366 k~yLd~g~y~kAL~~ar~---------------------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIART---------------------RPDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHhcchHHHHHHhccC---------------------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 457778888888875432 2332 223333455677788888888888873
No 500
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=25.84 E-value=2.8e+02 Score=20.59 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=22.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 048235 98 VMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLV 133 (455)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 133 (455)
+++-+.+|...++|+++.+-|.+.+..+...-+.|-
T Consensus 67 ViD~lrRC~T~EEALEVInylek~GEIt~e~A~eLr 102 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRGEITPEEAKELR 102 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 445556777777777777777777665554444433
Done!