Query 048235
Match_columns 455
No_of_seqs 517 out of 2825
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 13:08:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.2E-35 1.1E-39 290.5 35.5 402 5-442 82-574 (597)
2 2xpi_A Anaphase-promoting comp 100.0 5.4E-34 1.8E-38 281.7 37.7 407 3-430 113-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 6.9E-29 2.3E-33 231.7 43.9 383 13-433 5-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 1.8E-30 6.3E-35 246.9 30.3 192 52-243 20-223 (501)
5 4g26_A Pentatricopeptide repea 100.0 4.6E-31 1.6E-35 251.0 25.1 202 111-324 9-222 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.2E-25 4.2E-30 209.6 44.1 351 4-391 29-381 (388)
7 2y4t_A DNAJ homolog subfamily 100.0 2.7E-24 9.3E-29 204.6 40.5 308 6-347 25-364 (450)
8 2gw1_A Mitochondrial precursor 99.9 4.2E-24 1.5E-28 206.7 34.8 385 7-428 6-493 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 2.6E-22 8.8E-27 190.9 38.1 365 54-440 23-447 (450)
10 2gw1_A Mitochondrial precursor 99.9 3.2E-23 1.1E-27 200.6 31.9 368 56-442 5-473 (514)
11 3ieg_A DNAJ homolog subfamily 99.9 2E-20 6.8E-25 172.0 39.4 308 6-347 2-341 (359)
12 3fp2_A TPR repeat-containing p 99.9 4.1E-21 1.4E-25 186.9 33.8 379 7-421 25-499 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.7E-19 5.8E-24 165.7 39.3 316 56-391 2-348 (359)
14 3fp2_A TPR repeat-containing p 99.9 1.3E-20 4.6E-25 183.2 32.1 368 56-442 24-486 (537)
15 3hym_B Cell division cycle pro 99.9 9.7E-20 3.3E-24 165.4 32.8 287 53-347 18-305 (330)
16 3hym_B Cell division cycle pro 99.9 3.4E-19 1.2E-23 161.8 34.5 291 88-393 18-314 (330)
17 1fch_A Peroxisomal targeting s 99.9 8.4E-20 2.9E-24 168.7 27.9 266 56-336 63-354 (368)
18 4eqf_A PEX5-related protein; a 99.9 3.9E-19 1.3E-23 164.1 27.5 268 55-337 63-352 (365)
19 4eqf_A PEX5-related protein; a 99.9 2.5E-19 8.5E-24 165.4 26.1 278 6-302 64-352 (365)
20 1fch_A Peroxisomal targeting s 99.8 9.2E-19 3.1E-23 161.7 28.2 278 6-303 63-356 (368)
21 2xm6_A Protein corresponding t 99.8 2.4E-16 8.3E-21 151.3 43.8 370 6-432 38-454 (490)
22 3cv0_A Peroxisome targeting si 99.8 2.5E-18 8.5E-23 155.8 27.8 267 56-338 20-312 (327)
23 3cv0_A Peroxisome targeting si 99.8 3.1E-18 1E-22 155.2 28.2 268 6-304 20-313 (327)
24 4g1t_A Interferon-induced prot 99.8 7.3E-17 2.5E-21 154.3 37.4 358 54-442 48-454 (472)
25 2ooe_A Cleavage stimulation fa 99.8 6.4E-17 2.2E-21 156.9 35.7 398 6-440 12-485 (530)
26 4g1t_A Interferon-induced prot 99.8 4.4E-17 1.5E-21 155.8 32.6 386 5-426 49-472 (472)
27 3mkr_A Coatomer subunit epsilo 99.8 2.9E-17 1E-21 145.9 28.3 247 16-305 8-263 (291)
28 3mkr_A Coatomer subunit epsilo 99.8 5.1E-17 1.7E-21 144.4 28.7 277 64-368 6-286 (291)
29 2xm6_A Protein corresponding t 99.8 5.4E-15 1.8E-19 141.9 42.0 347 54-441 36-426 (490)
30 1b89_A Protein (clathrin heavy 99.8 1.3E-18 4.3E-23 158.3 12.7 309 69-429 15-339 (449)
31 1b89_A Protein (clathrin heavy 99.8 1.2E-18 4.1E-23 158.5 11.7 285 104-442 15-306 (449)
32 2ooe_A Cleavage stimulation fa 99.8 6.3E-16 2.2E-20 149.9 31.2 370 54-442 10-449 (530)
33 3spa_A Mtrpol, DNA-directed RN 99.8 2.2E-18 7.5E-23 169.1 11.4 116 196-323 127-247 (1134)
34 3uq3_A Heat shock protein STI1 99.7 1.3E-15 4.5E-20 132.8 27.0 224 57-305 5-235 (258)
35 3spa_A Mtrpol, DNA-directed RN 99.7 1.5E-17 5.1E-22 163.2 13.2 117 161-289 127-248 (1134)
36 1xi4_A Clathrin heavy chain; a 99.7 3.5E-14 1.2E-18 144.0 37.0 357 9-440 987-1377(1630)
37 2pl2_A Hypothetical conserved 99.7 1.5E-15 5.1E-20 128.9 23.0 201 54-258 2-213 (217)
38 3uq3_A Heat shock protein STI1 99.7 5.3E-15 1.8E-19 128.9 26.3 227 7-260 5-237 (258)
39 2pl2_A Hypothetical conserved 99.7 2.2E-15 7.5E-20 127.9 22.9 200 4-223 2-212 (217)
40 2ho1_A Type 4 fimbrial biogene 99.7 1.5E-14 5.1E-19 125.8 26.7 202 57-260 37-239 (252)
41 3u4t_A TPR repeat-containing p 99.7 1.5E-14 5E-19 127.3 26.5 238 95-346 6-255 (272)
42 2vq2_A PILW, putative fimbrial 99.7 3.1E-14 1.1E-18 121.2 27.4 205 54-260 5-212 (225)
43 2h6f_A Protein farnesyltransfe 99.7 2.1E-14 7.3E-19 131.8 27.2 249 7-289 97-365 (382)
44 2ho1_A Type 4 fimbrial biogene 99.7 4.7E-14 1.6E-18 122.6 28.1 200 92-305 37-237 (252)
45 1xnf_A Lipoprotein NLPI; TPR, 99.7 6.6E-15 2.3E-19 129.7 22.8 249 69-335 17-269 (275)
46 1xi4_A Clathrin heavy chain; a 99.7 1.1E-13 3.8E-18 140.4 33.6 346 12-432 1054-1415(1630)
47 2q7f_A YRRB protein; TPR, prot 99.7 6.8E-15 2.3E-19 127.0 22.1 213 5-236 21-233 (243)
48 3u4t_A TPR repeat-containing p 99.7 3E-14 1E-18 125.4 26.4 240 57-312 3-254 (272)
49 2h6f_A Protein farnesyltransfe 99.7 4.1E-14 1.4E-18 129.9 27.3 241 56-315 96-355 (382)
50 2vq2_A PILW, putative fimbrial 99.7 1E-13 3.6E-18 117.9 28.1 201 92-305 8-210 (225)
51 2q7f_A YRRB protein; TPR, prot 99.7 1.3E-14 4.5E-19 125.2 22.4 204 54-260 20-223 (243)
52 1ouv_A Conserved hypothetical 99.7 6.4E-13 2.2E-17 117.0 33.0 224 6-260 5-252 (273)
53 1ouv_A Conserved hypothetical 99.6 1.4E-12 4.7E-17 114.9 32.7 127 56-190 5-143 (273)
54 1xnf_A Lipoprotein NLPI; TPR, 99.6 1E-13 3.4E-18 122.1 24.4 247 174-441 18-269 (275)
55 4a1s_A PINS, partner of inscut 99.6 3.2E-14 1.1E-18 133.2 21.6 279 57-343 48-374 (411)
56 3sf4_A G-protein-signaling mod 99.6 4.1E-14 1.4E-18 132.0 21.9 277 5-305 7-335 (406)
57 3ro2_A PINS homolog, G-protein 99.6 6.2E-14 2.1E-18 127.0 21.6 278 57-343 5-334 (338)
58 3sf4_A G-protein-signaling mod 99.6 9.8E-14 3.4E-18 129.5 23.3 280 54-342 6-337 (406)
59 4a1s_A PINS, partner of inscut 99.6 2.7E-14 9.1E-19 133.8 19.1 275 8-306 49-372 (411)
60 3ro2_A PINS homolog, G-protein 99.6 1E-13 3.6E-18 125.5 20.4 275 7-305 5-331 (338)
61 2ond_A Cleavage stimulation fa 99.6 4.4E-12 1.5E-16 113.7 30.3 224 109-346 33-275 (308)
62 2ond_A Cleavage stimulation fa 99.6 5.3E-12 1.8E-16 113.2 30.5 235 57-306 8-270 (308)
63 3vtx_A MAMA; tetratricopeptide 99.6 2.2E-12 7.6E-17 106.1 24.0 166 125-305 4-169 (184)
64 3vtx_A MAMA; tetratricopeptide 99.6 2.6E-12 8.9E-17 105.7 23.8 167 91-259 4-170 (184)
65 3e4b_A ALGK; tetratricopeptide 99.6 4E-13 1.4E-17 127.1 21.3 300 13-341 9-351 (452)
66 4e6h_A MRNA 3'-END-processing 99.5 9.7E-11 3.3E-15 114.8 37.0 390 6-419 65-576 (679)
67 3nf1_A KLC 1, kinesin light ch 99.5 2.7E-13 9.2E-18 121.6 17.5 240 53-305 23-306 (311)
68 4abn_A Tetratricopeptide repea 99.5 9E-13 3.1E-17 125.5 21.3 212 73-302 84-317 (474)
69 4abn_A Tetratricopeptide repea 99.5 2.3E-12 7.9E-17 122.7 21.8 213 108-338 84-318 (474)
70 3e4b_A ALGK; tetratricopeptide 99.5 4E-12 1.4E-16 120.2 23.2 60 198-257 178-244 (452)
71 3ulq_A Response regulator aspa 99.5 3.4E-12 1.2E-16 118.3 20.9 301 17-342 22-369 (383)
72 3nf1_A KLC 1, kinesin light ch 99.5 2.9E-12 1E-16 114.7 18.3 242 125-373 26-304 (311)
73 3q15_A PSP28, response regulat 99.5 5.8E-11 2E-15 109.8 27.0 315 3-340 6-364 (378)
74 1hz4_A MALT regulatory protein 99.4 2.6E-10 8.8E-15 105.1 29.3 274 59-341 16-322 (373)
75 3ulq_A Response regulator aspa 99.4 1.1E-11 3.7E-16 114.9 20.0 228 63-305 109-367 (383)
76 1hz4_A MALT regulatory protein 99.4 3.3E-10 1.1E-14 104.4 29.6 273 10-305 17-321 (373)
77 3as5_A MAMA; tetratricopeptide 99.4 5.3E-11 1.8E-15 97.5 21.7 165 8-190 9-173 (186)
78 3as5_A MAMA; tetratricopeptide 99.4 4.9E-11 1.7E-15 97.8 21.2 163 95-259 11-173 (186)
79 4gyw_A UDP-N-acetylglucosamine 99.4 4.7E-11 1.6E-15 118.4 21.5 165 125-305 8-173 (723)
80 4i17_A Hypothetical protein; T 99.4 2.4E-10 8.1E-15 97.4 22.9 201 124-347 5-215 (228)
81 4i17_A Hypothetical protein; T 99.4 2.5E-10 8.6E-15 97.3 22.8 196 54-259 4-209 (228)
82 4gyw_A UDP-N-acetylglucosamine 99.4 8.5E-11 2.9E-15 116.5 22.3 166 55-223 7-172 (723)
83 4e6h_A MRNA 3'-END-processing 99.3 2.5E-09 8.4E-14 104.9 30.5 370 54-441 63-527 (679)
84 3edt_B KLC 2, kinesin light ch 99.3 3.9E-11 1.3E-15 105.6 15.5 155 69-223 13-196 (283)
85 3edt_B KLC 2, kinesin light ch 99.3 2E-10 6.9E-15 101.0 19.7 205 161-374 43-279 (283)
86 1qqe_A Vesicular transport pro 99.3 7.4E-10 2.5E-14 98.3 22.9 196 171-375 47-268 (292)
87 3q15_A PSP28, response regulat 99.3 3.5E-10 1.2E-14 104.5 21.5 229 61-305 105-364 (378)
88 3mv2_B Coatomer subunit epsilo 99.3 1E-09 3.5E-14 95.8 22.7 250 64-347 20-288 (310)
89 3mv2_B Coatomer subunit epsilo 99.2 7.7E-09 2.6E-13 90.3 23.2 255 15-312 21-286 (310)
90 2fo7_A Synthetic consensus TPR 99.2 3.1E-09 1E-13 81.7 18.3 130 59-190 3-132 (136)
91 2fo7_A Synthetic consensus TPR 99.2 3.7E-09 1.3E-13 81.2 18.6 131 128-260 3-133 (136)
92 1qqe_A Vesicular transport pro 99.2 1.8E-09 6.2E-14 95.7 18.9 201 58-258 38-268 (292)
93 3qky_A Outer membrane assembly 99.2 2.6E-09 8.7E-14 93.1 19.1 187 54-260 12-225 (261)
94 3qky_A Outer membrane assembly 99.2 3.6E-09 1.2E-13 92.1 19.4 187 6-226 14-225 (261)
95 3urz_A Uncharacterized protein 99.2 3.9E-09 1.3E-13 88.5 18.7 57 202-258 60-116 (208)
96 3urz_A Uncharacterized protein 99.1 7.6E-09 2.6E-13 86.7 19.4 176 56-236 3-196 (208)
97 2pzi_A Probable serine/threoni 99.1 3.6E-09 1.2E-13 105.2 19.2 182 18-211 402-583 (681)
98 3dra_A Protein farnesyltransfe 99.1 2.9E-07 9.8E-12 81.1 29.1 223 18-259 44-287 (306)
99 2pzi_A Probable serine/threoni 99.1 2.5E-09 8.7E-14 106.3 16.7 153 103-258 402-562 (681)
100 2ifu_A Gamma-SNAP; membrane fu 99.0 1.8E-08 6.1E-13 90.0 19.6 189 170-368 45-253 (307)
101 2yhc_A BAMD, UPF0169 lipoprote 99.0 4.4E-08 1.5E-12 83.1 20.8 203 92-343 4-215 (225)
102 3dra_A Protein farnesyltransfe 99.0 6.2E-07 2.1E-11 79.0 28.4 222 71-305 47-286 (306)
103 3qou_A Protein YBBN; thioredox 99.0 1E-08 3.5E-13 90.6 17.2 167 89-258 114-283 (287)
104 3qou_A Protein YBBN; thioredox 99.0 2.2E-08 7.7E-13 88.4 19.4 167 123-305 114-283 (287)
105 4ga2_A E3 SUMO-protein ligase 99.0 3E-09 1E-13 83.9 12.4 145 14-176 4-149 (150)
106 2yhc_A BAMD, UPF0169 lipoprote 99.0 4.7E-08 1.6E-12 82.9 20.5 186 56-260 3-214 (225)
107 4ga2_A E3 SUMO-protein ligase 99.0 2E-09 6.9E-14 84.9 10.7 139 104-244 9-148 (150)
108 2r5s_A Uncharacterized protein 99.0 4.9E-09 1.7E-13 85.2 13.0 161 10-188 9-171 (176)
109 2vsy_A XCC0866; transferase, g 99.0 1.9E-08 6.6E-13 98.1 19.4 161 71-234 3-166 (568)
110 2r5s_A Uncharacterized protein 99.0 7.8E-09 2.7E-13 84.0 13.8 43 216-258 94-136 (176)
111 2vsy_A XCC0866; transferase, g 99.0 1.9E-08 6.6E-13 98.1 18.7 138 54-193 20-160 (568)
112 3rjv_A Putative SEL1 repeat pr 99.0 1.5E-07 5.1E-12 78.9 20.9 174 111-307 5-198 (212)
113 2ifu_A Gamma-SNAP; membrane fu 99.0 1.5E-08 5.1E-13 90.5 15.3 229 70-333 4-253 (307)
114 3rjv_A Putative SEL1 repeat pr 99.0 1.6E-07 5.6E-12 78.7 20.7 175 143-342 3-198 (212)
115 2uy1_A Cleavage stimulation fa 98.9 1.1E-05 3.9E-10 76.6 33.3 365 8-410 16-411 (493)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.8E-07 6.1E-12 78.4 18.6 130 7-156 6-151 (213)
117 3q7a_A Farnesyltransferase alp 98.9 3.8E-06 1.3E-10 74.8 26.9 231 10-259 57-331 (349)
118 2qfc_A PLCR protein; TPR, HTH, 98.9 5.5E-07 1.9E-11 79.7 21.7 172 126-305 75-265 (293)
119 3u3w_A Transcriptional activat 98.8 1.1E-06 3.6E-11 77.8 23.0 198 53-259 42-266 (293)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.3E-07 1.1E-11 76.7 18.4 133 57-193 6-153 (213)
121 3q7a_A Farnesyltransferase alp 98.8 6.2E-06 2.1E-10 73.5 26.7 236 60-305 57-330 (349)
122 1na0_A Designed protein CTPR3; 98.8 2.9E-07 1E-11 69.3 14.8 113 57-171 9-121 (125)
123 2qfc_A PLCR protein; TPR, HTH, 98.8 1.8E-06 6.3E-11 76.3 21.9 172 163-342 77-267 (293)
124 1a17_A Serine/threonine protei 98.8 7.3E-07 2.5E-11 71.1 17.7 128 163-304 15-144 (166)
125 1a17_A Serine/threonine protei 98.8 3.7E-07 1.3E-11 72.8 15.8 129 57-187 13-143 (166)
126 4gco_A Protein STI-1; structur 98.8 4.5E-07 1.5E-11 68.9 15.3 99 57-156 13-111 (126)
127 3u3w_A Transcriptional activat 98.8 3.1E-07 1.1E-11 81.3 16.6 170 55-224 73-265 (293)
128 2lni_A Stress-induced-phosphop 98.7 3.6E-07 1.2E-11 69.8 14.4 120 54-175 13-132 (133)
129 1na0_A Designed protein CTPR3; 98.7 6.6E-07 2.3E-11 67.3 15.7 116 92-209 9-124 (125)
130 4gco_A Protein STI-1; structur 98.7 4.1E-07 1.4E-11 69.1 14.4 95 198-305 15-109 (126)
131 1p5q_A FKBP52, FK506-binding p 98.7 4.7E-08 1.6E-12 88.4 10.1 152 106-258 127-293 (336)
132 2vyi_A SGTA protein; chaperone 98.7 3.9E-07 1.4E-11 69.2 13.9 120 55-176 10-129 (131)
133 3gyz_A Chaperone protein IPGC; 98.7 9.3E-07 3.2E-11 69.3 16.0 99 161-260 36-134 (151)
134 2c2l_A CHIP, carboxy terminus 98.7 2.3E-07 7.9E-12 81.5 13.9 197 55-259 2-199 (281)
135 3gyz_A Chaperone protein IPGC; 98.7 1.6E-07 5.3E-12 73.8 11.4 99 56-155 35-133 (151)
136 3gw4_A Uncharacterized protein 98.7 6E-07 2E-11 74.4 15.6 155 104-258 4-175 (203)
137 2lni_A Stress-induced-phosphop 98.7 5.5E-07 1.9E-11 68.7 14.3 121 89-211 13-133 (133)
138 4f3v_A ESX-1 secretion system 98.7 6E-07 2.1E-11 77.3 15.6 186 104-305 18-236 (282)
139 2c2l_A CHIP, carboxy terminus 98.7 1.6E-07 5.6E-12 82.5 12.0 96 126-223 4-99 (281)
140 2e2e_A Formate-dependent nitri 98.7 2.8E-07 9.6E-12 74.7 12.6 83 175-258 24-109 (177)
141 2vgx_A Chaperone SYCD; alterna 98.7 3.6E-07 1.2E-11 71.6 12.4 95 197-305 22-117 (148)
142 3gw4_A Uncharacterized protein 98.7 4.1E-07 1.4E-11 75.4 13.5 156 68-224 3-175 (203)
143 2vyi_A SGTA protein; chaperone 98.7 1.6E-06 5.5E-11 65.7 15.9 117 162-292 13-129 (131)
144 3dss_A Geranylgeranyl transfer 98.7 2.6E-05 8.9E-10 69.1 25.3 223 104-344 41-307 (331)
145 2e2e_A Formate-dependent nitri 98.6 3.9E-07 1.3E-11 73.9 12.6 119 139-259 23-144 (177)
146 4f3v_A ESX-1 secretion system 98.6 8.1E-07 2.8E-11 76.5 14.9 197 19-236 18-247 (282)
147 2uy1_A Cleavage stimulation fa 98.6 2.1E-05 7.2E-10 74.7 26.1 330 3-373 43-410 (493)
148 3dss_A Geranylgeranyl transfer 98.6 0.00012 4.1E-09 64.9 29.0 233 9-260 28-305 (331)
149 1p5q_A FKBP52, FK506-binding p 98.6 1.7E-06 5.9E-11 78.0 17.4 150 140-304 127-292 (336)
150 2vgx_A Chaperone SYCD; alterna 98.6 3.2E-07 1.1E-11 72.0 10.9 99 56-155 20-118 (148)
151 2fbn_A 70 kDa peptidylprolyl i 98.6 1.6E-07 5.5E-12 77.8 9.2 155 104-259 16-186 (198)
152 4gcn_A Protein STI-1; structur 98.6 2.1E-06 7.3E-11 65.2 14.2 108 196-315 8-119 (127)
153 3upv_A Heat shock protein STI1 98.6 3.3E-06 1.1E-10 63.9 15.2 94 198-305 6-100 (126)
154 1elw_A TPR1-domain of HOP; HOP 98.5 3.2E-06 1.1E-10 62.7 14.4 97 58-155 5-101 (118)
155 3upv_A Heat shock protein STI1 98.5 4.3E-06 1.5E-10 63.3 14.9 97 162-259 5-101 (126)
156 1elw_A TPR1-domain of HOP; HOP 98.5 6.9E-06 2.4E-10 60.8 15.7 112 91-204 3-114 (118)
157 1elr_A TPR2A-domain of HOP; HO 98.5 2.7E-06 9.2E-11 64.5 13.4 112 196-319 4-119 (131)
158 3sz7_A HSC70 cochaperone (SGT) 98.5 5.5E-06 1.9E-10 66.0 15.4 95 197-305 12-107 (164)
159 2kck_A TPR repeat; tetratricop 98.5 2.8E-06 9.4E-11 62.4 12.2 100 56-156 5-107 (112)
160 2xcb_A PCRH, regulatory protei 98.5 6.4E-06 2.2E-10 63.8 14.6 93 200-305 22-114 (142)
161 2xcb_A PCRH, regulatory protei 98.5 3.9E-06 1.3E-10 65.1 13.2 98 162-260 19-116 (142)
162 4b4t_Q 26S proteasome regulato 98.4 2.3E-05 8E-10 73.3 20.8 195 64-258 11-244 (434)
163 3q49_B STIP1 homology and U bo 98.4 7.6E-06 2.6E-10 62.8 14.4 101 54-155 6-106 (137)
164 3q49_B STIP1 homology and U bo 98.4 8.6E-06 2.9E-10 62.4 14.7 100 160-260 8-107 (137)
165 2kck_A TPR repeat; tetratricop 98.4 3.9E-06 1.3E-10 61.6 12.2 104 229-345 5-110 (112)
166 2fbn_A 70 kDa peptidylprolyl i 98.4 3.8E-06 1.3E-10 69.3 13.3 131 7-152 38-183 (198)
167 1elr_A TPR2A-domain of HOP; HO 98.4 4.4E-06 1.5E-10 63.3 12.7 98 162-260 5-109 (131)
168 3sz7_A HSC70 cochaperone (SGT) 98.4 1.1E-05 3.8E-10 64.2 15.5 99 161-260 11-109 (164)
169 4gcn_A Protein STI-1; structur 98.4 8.7E-06 3E-10 61.7 14.1 96 163-259 10-112 (127)
170 2dba_A Smooth muscle cell asso 98.4 1.2E-05 4.2E-10 62.3 15.4 101 54-156 25-129 (148)
171 1hxi_A PEX5, peroxisome target 98.4 6.3E-06 2.2E-10 61.9 11.7 90 202-305 23-113 (121)
172 4b4t_Q 26S proteasome regulato 98.3 5.4E-05 1.9E-09 70.7 20.7 168 164-339 58-243 (434)
173 2dba_A Smooth muscle cell asso 98.3 3.6E-05 1.2E-09 59.7 16.4 109 125-236 27-139 (148)
174 1hxi_A PEX5, peroxisome target 98.3 9.2E-06 3.1E-10 61.0 11.8 94 165-259 21-114 (121)
175 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 1.5E-06 5.2E-11 82.0 8.0 151 107-258 249-414 (457)
176 3ro3_A PINS homolog, G-protein 98.3 1.1E-05 3.7E-10 63.6 11.6 135 163-305 11-157 (164)
177 3ro3_A PINS homolog, G-protein 98.2 1.7E-05 5.7E-10 62.5 12.6 139 196-342 9-159 (164)
178 2xev_A YBGF; tetratricopeptide 98.2 5E-05 1.7E-09 57.3 14.5 24 235-258 44-67 (129)
179 2xev_A YBGF; tetratricopeptide 98.2 7.1E-05 2.4E-09 56.4 15.0 92 167-259 8-105 (129)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 3.7E-05 1.3E-09 72.5 15.5 130 161-304 268-413 (457)
181 3rkv_A Putative peptidylprolyl 98.2 3.4E-05 1.2E-09 61.2 13.0 62 231-305 64-125 (162)
182 3rkv_A Putative peptidylprolyl 98.2 5.6E-05 1.9E-09 59.9 14.1 66 195-260 62-127 (162)
183 1wao_1 Serine/threonine protei 98.2 1.5E-06 5.1E-11 82.4 5.3 122 12-150 11-134 (477)
184 3k9i_A BH0479 protein; putativ 98.1 6.9E-06 2.4E-10 61.2 7.7 87 174-260 3-91 (117)
185 3k9i_A BH0479 protein; putativ 98.1 1.1E-05 3.6E-10 60.2 8.4 84 140-224 4-89 (117)
186 1wao_1 Serine/threonine protei 98.1 2.1E-05 7.2E-10 74.5 11.6 120 168-302 13-135 (477)
187 1dce_A Protein (RAB geranylger 98.1 0.00035 1.2E-08 67.5 20.1 188 58-248 26-244 (567)
188 1ihg_A Cyclophilin 40; ppiase 98.1 6.4E-05 2.2E-09 68.6 14.2 121 164-298 226-362 (370)
189 1ihg_A Cyclophilin 40; ppiase 98.1 3.5E-05 1.2E-09 70.3 12.4 137 8-145 224-360 (370)
190 2hr2_A Hypothetical protein; a 98.0 0.00015 5.2E-09 56.3 12.8 100 199-305 14-130 (159)
191 2if4_A ATFKBP42; FKBP-like, al 98.0 2.2E-05 7.4E-10 70.8 9.1 152 162-346 180-333 (338)
192 2if4_A ATFKBP42; FKBP-like, al 98.0 2.3E-05 7.7E-10 70.7 9.2 150 7-191 179-329 (338)
193 1dce_A Protein (RAB geranylger 98.0 0.00084 2.9E-08 64.8 20.4 176 104-295 40-244 (567)
194 2hr2_A Hypothetical protein; a 98.0 0.00019 6.7E-09 55.7 12.7 93 167-259 17-131 (159)
195 3n71_A Histone lysine methyltr 97.8 7.3E-05 2.5E-09 70.5 10.4 131 16-154 318-463 (490)
196 2l6j_A TPR repeat-containing p 97.8 0.00016 5.6E-09 52.7 9.5 66 195-260 3-68 (111)
197 2kat_A Uncharacterized protein 97.8 0.00018 6.3E-09 53.0 9.7 78 215-305 4-81 (115)
198 1zu2_A Mitochondrial import re 97.8 7.3E-05 2.5E-09 58.0 7.4 97 208-320 14-132 (158)
199 2kat_A Uncharacterized protein 97.8 0.00027 9.1E-09 52.1 10.4 66 54-120 16-81 (115)
200 1na3_A Designed protein CTPR2; 97.8 0.0004 1.4E-08 48.4 10.8 82 56-138 8-89 (91)
201 2l6j_A TPR repeat-containing p 97.7 0.00017 6E-09 52.5 9.0 90 56-146 3-98 (111)
202 3n71_A Histone lysine methyltr 97.7 0.00072 2.5E-08 63.7 15.0 130 170-305 318-463 (490)
203 1klx_A Cysteine rich protein B 97.7 0.0013 4.3E-08 50.4 13.9 111 175-307 9-127 (138)
204 1na3_A Designed protein CTPR2; 97.7 0.00076 2.6E-08 46.9 11.5 64 196-259 9-72 (91)
205 1klx_A Cysteine rich protein B 97.7 0.0021 7.1E-08 49.1 14.7 111 140-260 9-127 (138)
206 1zu2_A Mitochondrial import re 97.6 0.00023 7.9E-09 55.2 8.0 98 174-286 15-133 (158)
207 3ma5_A Tetratricopeptide repea 97.5 0.00072 2.5E-08 48.3 9.5 66 54-120 4-69 (100)
208 3ma5_A Tetratricopeptide repea 97.5 0.00078 2.7E-08 48.2 9.4 65 195-259 6-70 (100)
209 3ly7_A Transcriptional activat 97.3 0.0074 2.5E-07 53.8 14.4 65 227-305 274-338 (372)
210 3mkq_A Coatomer beta'-subunit; 97.2 0.017 5.8E-07 58.6 18.8 77 165-258 633-709 (814)
211 3ly7_A Transcriptional activat 97.1 0.032 1.1E-06 49.7 16.4 67 193-260 274-340 (372)
212 2kc7_A BFR218_protein; tetratr 96.8 0.0031 1.1E-07 44.6 6.7 61 169-230 8-69 (99)
213 3qwp_A SET and MYND domain-con 96.8 0.0055 1.9E-07 56.8 9.7 99 13-119 293-398 (429)
214 2kc7_A BFR218_protein; tetratr 96.8 0.0038 1.3E-07 44.1 6.8 54 102-155 10-64 (99)
215 3qww_A SET and MYND domain-con 96.8 0.0036 1.2E-07 58.0 8.1 93 19-119 310-409 (433)
216 3qww_A SET and MYND domain-con 96.7 0.017 5.8E-07 53.5 12.3 87 173-259 310-411 (433)
217 3mkq_A Coatomer beta'-subunit; 96.7 0.062 2.1E-06 54.4 17.5 131 60-222 632-762 (814)
218 3qwp_A SET and MYND domain-con 96.6 0.041 1.4E-06 50.9 14.4 98 202-305 293-399 (429)
219 3bee_A Putative YFRE protein; 96.6 0.017 5.7E-07 40.4 8.8 67 194-260 4-73 (93)
220 3u64_A Protein TP_0956; tetrat 96.4 0.33 1.1E-05 41.6 16.9 88 212-313 179-278 (301)
221 1wy6_A Hypothetical protein ST 96.3 0.2 6.7E-06 37.1 15.7 140 18-193 18-157 (172)
222 3mkq_B Coatomer subunit alpha; 96.3 0.18 6.2E-06 39.6 13.7 27 196-222 34-60 (177)
223 3bee_A Putative YFRE protein; 96.2 0.069 2.4E-06 37.2 10.3 48 108-155 25-72 (93)
224 3mkq_B Coatomer subunit alpha; 96.2 0.28 9.5E-06 38.5 14.3 48 135-188 14-61 (177)
225 1pc2_A Mitochondria fission pr 96.1 0.12 4.1E-06 39.5 11.8 71 275-346 30-105 (152)
226 1pc2_A Mitochondria fission pr 96.1 0.1 3.4E-06 39.9 11.1 82 293-375 14-99 (152)
227 4h7y_A Dual specificity protei 96.0 0.28 9.6E-06 37.1 13.0 104 227-345 10-127 (161)
228 4b4t_P 26S proteasome regulato 95.9 1 3.5E-05 41.7 20.4 263 71-344 30-327 (445)
229 2v5f_A Prolyl 4-hydroxylase su 95.9 0.14 4.8E-06 36.4 11.1 60 165-224 9-74 (104)
230 2v5f_A Prolyl 4-hydroxylase su 95.9 0.11 3.9E-06 36.9 10.5 70 56-125 4-79 (104)
231 1wy6_A Hypothetical protein ST 95.3 0.58 2E-05 34.6 15.3 67 229-308 90-156 (172)
232 3u64_A Protein TP_0956; tetrat 95.2 0.15 5.1E-06 43.6 10.1 94 109-202 180-283 (301)
233 4h7y_A Dual specificity protei 94.4 0.73 2.5E-05 34.9 10.8 114 5-135 11-137 (161)
234 3lvg_A Clathrin heavy chain 1; 94.2 0.00025 8.7E-09 64.6 -9.5 211 9-254 56-286 (624)
235 1nzn_A CGI-135 protein, fissio 94.0 0.59 2E-05 34.3 9.5 90 244-347 15-109 (126)
236 1v54_E Cytochrome C oxidase po 93.9 0.58 2E-05 32.5 8.6 64 72-135 25-88 (109)
237 1nzn_A CGI-135 protein, fissio 93.9 0.81 2.8E-05 33.6 10.0 89 142-231 17-109 (126)
238 4ady_A RPN2, 26S proteasome re 93.7 6.6 0.00023 39.8 21.6 181 74-259 471-658 (963)
239 4gns_B Protein CSD3, chitin bi 93.4 0.75 2.6E-05 45.4 12.0 54 203-256 344-397 (754)
240 1v54_E Cytochrome C oxidase po 93.2 1.3 4.3E-05 30.8 9.3 63 176-238 25-87 (109)
241 4ady_A RPN2, 26S proteasome re 92.7 9.5 0.00032 38.7 23.4 171 134-322 498-671 (963)
242 2ff4_A Probable regulatory pro 92.5 0.66 2.3E-05 42.2 9.7 128 54-199 109-248 (388)
243 4gns_B Protein CSD3, chitin bi 92.3 1.2 4.1E-05 44.0 11.7 128 162-303 249-397 (754)
244 4fhn_B Nucleoporin NUP120; pro 92.3 13 0.00044 39.2 21.4 52 131-187 817-868 (1139)
245 3ffl_A Anaphase-promoting comp 92.2 1.3 4.4E-05 34.2 9.3 105 273-377 14-152 (167)
246 3lvg_A Clathrin heavy chain 1; 92.0 7.2E-05 2.5E-09 68.0 -16.5 205 196-448 54-260 (624)
247 4b4t_P 26S proteasome regulato 91.6 8.3 0.00028 35.6 22.4 261 20-304 29-322 (445)
248 2y69_E Cytochrome C oxidase su 91.6 1.5 5.3E-05 32.2 8.6 63 72-134 68-130 (152)
249 4fhn_B Nucleoporin NUP120; pro 91.1 16 0.00056 38.4 19.5 129 128-258 901-1049(1139)
250 2y69_E Cytochrome C oxidase su 90.7 2.9 9.9E-05 30.8 9.3 63 176-238 68-130 (152)
251 2ff4_A Probable regulatory pro 90.7 1.7 5.7E-05 39.5 10.3 61 198-258 173-233 (388)
252 3txn_A 26S proteasome regulato 88.5 14 0.00047 33.4 21.4 98 235-339 104-208 (394)
253 4b4t_R RPN7, 26S proteasome re 87.1 11 0.00038 34.5 13.3 101 232-344 133-240 (429)
254 3ffl_A Anaphase-promoting comp 86.1 3.7 0.00013 31.7 7.8 100 236-346 26-156 (167)
255 3txn_A 26S proteasome regulato 85.4 21 0.00071 32.2 25.1 162 166-339 104-282 (394)
256 3o48_A Mitochondria fission 1 83.8 11 0.00038 27.8 11.0 75 273-347 36-113 (134)
257 1qsa_A Protein (soluble lytic 83.2 35 0.0012 33.0 22.6 330 59-410 9-346 (618)
258 4b4t_R RPN7, 26S proteasome re 83.0 9.6 0.00033 35.0 10.8 100 56-155 130-237 (429)
259 1zbp_A Hypothetical protein VP 82.2 6.9 0.00024 32.9 8.4 129 285-419 5-135 (273)
260 2uwj_G Type III export protein 82.1 7.3 0.00025 26.9 6.9 51 358-415 50-100 (115)
261 2p58_C Putative type III secre 82.0 7.6 0.00026 26.9 7.0 16 359-374 52-67 (116)
262 3eiq_C Programmed cell death p 81.6 21 0.00071 31.7 11.8 63 198-260 219-283 (358)
263 1zbp_A Hypothetical protein VP 78.6 7.9 0.00027 32.6 7.6 53 68-121 8-60 (273)
264 1y8m_A FIS1; mitochondria, unk 75.5 23 0.00078 26.5 12.3 74 274-347 36-112 (144)
265 2uwj_G Type III export protein 75.3 18 0.0006 25.1 8.0 80 174-260 19-98 (115)
266 2p58_C Putative type III secre 74.4 19 0.00064 25.0 8.5 80 174-260 20-99 (116)
267 2zu6_B Programmed cell death p 73.0 16 0.00056 31.6 8.5 62 199-260 169-232 (307)
268 3esl_A Checkpoint serine/threo 70.7 39 0.0013 27.0 10.9 58 243-311 92-149 (202)
269 3o48_A Mitochondria fission 1 70.5 30 0.001 25.5 11.9 72 158-229 37-111 (134)
270 2d2s_A Exocyst complex compone 68.8 46 0.0016 27.4 10.0 23 63-85 24-46 (235)
271 3lpz_A GET4 (YOR164C homolog); 66.6 67 0.0023 28.1 22.6 83 227-340 133-215 (336)
272 1wdy_A 2-5A-dependent ribonucl 65.2 14 0.00048 31.0 6.7 184 62-260 7-209 (285)
273 3esl_A Checkpoint serine/threo 61.0 62 0.0021 25.8 10.4 58 290-347 92-150 (202)
274 2fe3_A Peroxide operon regulat 60.5 42 0.0014 25.1 7.7 61 301-362 11-71 (145)
275 1qsa_A Protein (soluble lytic 60.2 1.3E+02 0.0043 29.1 28.4 79 59-142 74-152 (618)
276 3bu8_A Telomeric repeat-bindin 59.3 30 0.001 27.8 6.6 66 293-360 88-160 (235)
277 3eiq_C Programmed cell death p 58.4 53 0.0018 29.1 9.0 61 163-224 219-281 (358)
278 1y8m_A FIS1; mitochondria, unk 57.5 57 0.002 24.4 13.6 72 158-229 36-110 (144)
279 1bpo_A Protein (clathrin); cla 56.6 1.2E+02 0.0042 27.9 11.0 141 174-338 342-482 (494)
280 4a1g_A Mitotic checkpoint seri 55.8 38 0.0013 25.7 6.6 50 145-194 84-134 (152)
281 2xig_A Ferric uptake regulatio 55.0 44 0.0015 25.2 7.1 62 301-363 16-77 (150)
282 3hra_A Ankyrin repeat family p 54.9 19 0.00065 28.3 5.4 82 15-117 10-94 (201)
283 2wpv_A GET4, UPF0363 protein Y 54.9 1.1E+02 0.0036 26.6 23.2 139 66-223 62-215 (312)
284 2ion_A PDCD4, programmed cell 54.6 55 0.0019 24.8 7.4 67 9-91 11-79 (152)
285 3lpz_A GET4 (YOR164C homolog); 52.3 1.2E+02 0.0041 26.5 22.7 109 96-219 39-159 (336)
286 2d2s_A Exocyst complex compone 52.3 98 0.0033 25.5 9.4 28 195-222 90-117 (235)
287 2wvi_A Mitotic checkpoint seri 51.8 47 0.0016 25.5 6.6 49 111-159 79-129 (164)
288 1mzb_A Ferric uptake regulatio 51.7 43 0.0015 24.6 6.4 60 302-362 8-68 (136)
289 4ets_A Ferric uptake regulatio 50.9 54 0.0019 25.1 7.0 68 294-362 14-84 (162)
290 4a1g_A Mitotic checkpoint seri 50.0 81 0.0028 23.8 10.0 51 249-310 84-134 (152)
291 2ion_A PDCD4, programmed cell 48.2 86 0.003 23.7 8.1 23 61-83 13-35 (152)
292 3eyy_A Putative iron uptake re 47.6 47 0.0016 24.8 6.1 60 301-362 8-67 (145)
293 2r9g_A AAA ATPase, central reg 47.2 1.1E+02 0.0036 24.4 9.0 60 283-343 17-84 (204)
294 2w57_A Ferric uptake regulatio 46.7 46 0.0016 25.1 5.9 62 301-363 6-68 (150)
295 1ug3_A EIF4GI, eukaryotic prot 45.9 1E+02 0.0035 27.0 8.9 11 384-394 273-283 (339)
296 4b4t_S RPN3, 26S proteasome re 45.3 1.8E+02 0.0062 27.3 10.6 63 92-154 231-298 (523)
297 2wpv_A GET4, UPF0363 protein Y 45.0 1.5E+02 0.0052 25.6 22.5 109 97-219 38-157 (312)
298 1k1a_A B-cell lymphoma 3-encod 44.6 71 0.0024 25.7 7.5 20 15-34 14-33 (241)
299 2xig_A Ferric uptake regulatio 44.5 97 0.0033 23.2 7.7 7 181-187 46-52 (150)
300 2wvi_A Mitotic checkpoint seri 43.1 1.1E+02 0.0038 23.5 10.1 52 249-311 79-130 (164)
301 4aez_C MAD3, mitotic spindle c 43.0 65 0.0022 26.2 6.5 35 276-310 149-183 (223)
302 2fe3_A Peroxide operon regulat 42.0 1E+02 0.0034 22.9 7.2 14 178-191 38-51 (145)
303 4aez_C MAD3, mitotic spindle c 41.2 65 0.0022 26.2 6.2 53 143-195 131-184 (223)
304 1ug3_A EIF4GI, eukaryotic prot 39.7 1.9E+02 0.0066 25.2 10.0 26 59-84 13-38 (339)
305 3kea_A K1L; tropism, ANK repea 39.4 34 0.0012 29.0 4.8 179 65-260 36-218 (285)
306 1wdy_A 2-5A-dependent ribonucl 38.1 86 0.0029 25.9 7.2 122 12-159 7-131 (285)
307 2nsz_A Programmed cell death p 38.0 1.1E+02 0.0039 22.2 9.7 21 98-118 13-33 (129)
308 1wty_A Hypothetical protein TT 37.5 1.1E+02 0.0038 21.8 8.2 76 245-339 3-79 (119)
309 2qx5_A Nucleoporin NIC96; mRNA 37.4 3E+02 0.01 26.8 15.1 24 12-35 157-180 (661)
310 3ctd_A Putative ATPase, AAA fa 36.8 1.6E+02 0.0056 23.6 9.5 36 127-162 33-71 (213)
311 3bge_A Predicted ATPase; struc 35.7 1.3E+02 0.0044 23.9 6.8 60 283-342 10-77 (201)
312 1mzb_A Ferric uptake regulatio 35.6 1.1E+02 0.0036 22.5 6.4 13 179-191 36-48 (136)
313 3ctd_A Putative ATPase, AAA fa 35.3 1.7E+02 0.0059 23.4 8.9 65 280-344 35-107 (213)
314 2nsz_A Programmed cell death p 35.0 1.3E+02 0.0044 21.9 10.0 62 199-260 10-73 (129)
315 2b7e_A PRE-mRNA processing pro 34.9 42 0.0014 20.6 3.1 29 74-102 3-31 (59)
316 3eyy_A Putative iron uptake re 34.7 92 0.0032 23.2 5.9 11 180-190 36-46 (145)
317 1zl8_A LIN-7; heterodimer, alp 34.6 70 0.0024 18.7 4.0 21 327-347 8-28 (53)
318 2zu6_B Programmed cell death p 34.5 2.2E+02 0.0076 24.5 12.2 70 278-348 167-238 (307)
319 3bqo_A Telomeric repeat-bindin 34.5 56 0.0019 25.9 4.6 27 318-344 123-149 (211)
320 4gq2_M Nucleoporin NUP120; bet 34.2 4E+02 0.014 27.3 12.7 88 167-259 816-926 (950)
321 1k1a_A B-cell lymphoma 3-encod 34.0 68 0.0023 25.8 5.7 152 64-221 13-172 (241)
322 4ets_A Ferric uptake regulatio 33.4 1.3E+02 0.0044 22.9 6.7 13 177-189 48-60 (162)
323 2o03_A Probable zinc uptake re 32.8 68 0.0023 23.4 4.8 44 284-327 17-60 (131)
324 4fke_A Aminopeptidase N; zinc 32.7 4.1E+02 0.014 27.0 15.8 118 136-258 736-859 (909)
325 2w57_A Ferric uptake regulatio 31.9 1.2E+02 0.0039 22.8 6.1 31 179-209 35-65 (150)
326 2ijq_A Hypothetical protein; s 31.5 1.7E+02 0.0059 22.3 8.5 61 9-85 35-103 (161)
327 1oai_A Nuclear RNA export fact 31.4 41 0.0014 20.6 2.8 24 325-348 33-56 (59)
328 3lxu_X Tripeptidyl-peptidase 2 31.3 2.3E+02 0.008 30.2 9.8 47 242-303 1296-1342(1354)
329 3aji_A 26S proteasome non-ATPa 30.4 1.2E+02 0.0042 24.0 6.7 20 14-33 10-29 (231)
330 3mwm_A ZUR, putative metal upt 29.2 65 0.0022 23.8 4.2 44 284-327 20-63 (139)
331 3eu9_A Huntingtin-interacting 29.2 22 0.00076 28.8 1.8 46 67-116 16-63 (240)
332 2o03_A Probable zinc uptake re 28.1 1E+02 0.0035 22.4 5.1 41 132-172 16-56 (131)
333 3f3f_C Nucleoporin NUP85; stru 27.9 2E+02 0.0067 27.3 7.9 72 107-180 496-568 (570)
334 2qq8_A TBC1 domain family memb 26.8 90 0.0031 27.3 5.4 35 273-307 224-258 (334)
335 3kae_A CDC27, possible protein 26.7 2.3E+02 0.0077 22.1 11.2 91 59-155 34-143 (242)
336 3mwm_A ZUR, putative metal upt 25.1 93 0.0032 22.9 4.4 31 133-163 20-50 (139)
337 4gq2_M Nucleoporin NUP120; bet 25.1 5.7E+02 0.019 26.2 12.9 106 132-243 816-949 (950)
338 2dae_A KIAA0733 protein; mitog 24.4 1.3E+02 0.0044 19.1 4.0 39 331-371 10-48 (75)
339 2qfz_A TBC1 domain family memb 24.1 1.8E+02 0.0063 25.3 6.9 78 298-375 230-314 (345)
340 3f3f_C Nucleoporin NUP85; stru 24.0 1.8E+02 0.0062 27.5 6.9 54 195-249 515-568 (570)
341 2fu4_A Ferric uptake regulatio 23.5 1.5E+02 0.0052 19.0 6.0 8 111-118 36-43 (83)
342 3bu8_A Telomeric repeat-bindin 22.7 3.1E+02 0.01 22.2 12.6 49 212-260 88-144 (235)
343 1oyz_A Hypothetical protein YI 22.5 3.3E+02 0.011 22.4 23.9 122 124-258 140-262 (280)
344 4b4t_S RPN3, 26S proteasome re 22.1 4.9E+02 0.017 24.4 12.3 66 7-86 231-299 (523)
345 3r88_A Anthranilate phosphorib 21.9 3.7E+02 0.013 23.9 8.3 26 9-34 25-52 (377)
346 3twr_A Tankyrase-2; ankyrin re 21.9 2.3E+02 0.0079 20.8 6.4 18 14-31 12-29 (165)
347 3jxi_A Vanilloid receptor-rela 21.8 1.1E+02 0.0037 25.0 4.8 26 66-91 11-36 (260)
348 3hra_A Ankyrin repeat family p 21.6 97 0.0033 24.0 4.3 57 204-260 111-168 (201)
349 2yru_A Steroid receptor RNA ac 21.1 1.9E+02 0.0066 20.6 5.1 43 299-341 48-90 (118)
350 1jog_A Hypothetical protein HI 21.1 2.3E+02 0.0077 21.1 5.9 60 278-340 41-104 (146)
351 2r9g_A AAA ATPase, central reg 20.9 3.2E+02 0.011 21.7 10.2 18 139-156 27-44 (204)
352 1wgl_A TOLL-interacting protei 20.8 1.3E+02 0.0044 18.4 3.6 23 69-91 35-57 (59)
353 3bge_A Predicted ATPase; struc 20.6 3.2E+02 0.011 21.7 9.3 22 139-160 20-41 (201)
354 4fke_A Aminopeptidase N; zinc 20.6 6.8E+02 0.023 25.4 16.0 89 166-258 691-786 (909)
355 3t8k_A Uncharacterized protein 20.5 2.9E+02 0.01 21.2 8.2 30 63-92 41-70 (186)
356 2qx5_A Nucleoporin NIC96; mRNA 20.5 6E+02 0.02 24.7 22.7 20 358-377 549-568 (661)
357 3ygs_P Procaspase 9; apoptosis 20.4 1.8E+02 0.0063 19.7 4.8 39 21-78 51-89 (97)
358 2ijq_A Hypothetical protein; s 20.2 2.9E+02 0.01 21.0 8.7 52 173-224 44-103 (161)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-35 Score=290.49 Aligned_cols=402 Identities=12% Similarity=-0.019 Sum_probs=317.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048235 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLK 84 (455)
Q Consensus 5 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 84 (455)
|++..|+.++..|.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|..+|+++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 144 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI-----------------TGNPNDAFWLAQVYCCTGDYARAKCLLTKED 144 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh-----------------CCCchHHHHHHHHHHHcCcHHHHHHHHHHHh
Confidence 67788999999999999999999999999742 4566677777777777777777777777664
Q ss_pred HcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcC----------------CCCHHHHHHHHHHHHhcCChHHHHHH
Q 048235 85 QQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY----------------IPNALAYKVLVNTLWREGKTDEAVSA 148 (455)
Q Consensus 85 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~~~~li~~~~~~g~~~~a~~~ 148 (455)
.. +++..+++.++.+|.+.|++++|.++|+++.... +.+..+|+.++.+|.+.|++++|.++
T Consensus 145 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 222 (597)
T 2xpi_A 145 LY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKEC 222 (597)
T ss_dssp GG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 32 4566677777777777777777777776432221 12456677777777777777777777
Q ss_pred HHHHHHCCC----------------------------------------------------------------------C
Q 048235 149 VEDMERRGI----------------------------------------------------------------------V 158 (455)
Q Consensus 149 ~~~m~~~~~----------------------------------------------------------------------~ 158 (455)
|++|.+.+. +
T Consensus 223 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 302 (597)
T 2xpi_A 223 YKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE 302 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGG
T ss_pred HHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCC
Confidence 776654321 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048235 159 GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVK 238 (455)
Q Consensus 159 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 238 (455)
++..+++.++..|.+.|++++|..+|+++.+.+.. +..+++.++.+|.+.|++++|..+|+++....+.+..+|+.++.
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 381 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI 381 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 56777888888889999999999999998877643 67788888999999999999999999888767788999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048235 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRM 318 (455)
Q Consensus 239 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 318 (455)
.|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..++..+
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l 447 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMD-------------PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFL 447 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHH
Confidence 9999999999999999998854 23688999999999999999999999999998542 367789999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCC----C-CccccHHHHHHHHhhh
Q 048235 319 ILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVS----G-SPEFSRNAWLKFFKEN 393 (455)
Q Consensus 319 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~~l~~~~ 393 (455)
...|.+.|++++|.++|+++.+..+..+. .+..+...+.+.|++++|+++++++... + .+......|..+...+
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALFQYDPL-LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 99999999999999999999988766443 3444555556999999999999977432 1 1111147899999987
Q ss_pred cccCCcchHHHHHHHhccccccccCCCchhHHHHHHhHHhhhhccCCcc
Q 048235 394 SQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQSPAP 442 (455)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 442 (455)
...++.+++.+.+.+.+. .+|+++.++..++.+|...|+|++|....+
T Consensus 527 ~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLL-LSTNDANVHTAIALVYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHTTCHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 788888788887777666 889999999999999999999999887754
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.4e-34 Score=281.70 Aligned_cols=407 Identities=8% Similarity=-0.033 Sum_probs=319.0
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCcccc--------------ccccccccCCCC---------------
Q 048235 3 SYPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKF--------------KTGTLERWDPRL--------------- 53 (455)
Q Consensus 3 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~--------------- 53 (455)
..|+..++..++.+|.+.|++++|+.+|+.+...+.... -..+.+.|+...
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 192 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQ 192 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CC
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccccc
Confidence 357777888888888888888888888888753221100 001223333221
Q ss_pred ----CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH-------------------------------
Q 048235 54 ----EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLV------------------------------- 98 (455)
Q Consensus 54 ----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l------------------------------- 98 (455)
+++..+|+.++.+|.+.|++++|+++|++|.+.+.. +...+..+
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 271 (597)
T 2xpi_A 193 DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271 (597)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHH
T ss_pred ccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHH
Confidence 224677777777777777777777777777765432 22222222
Q ss_pred -------HHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048235 99 -------MEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171 (455)
Q Consensus 99 -------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 171 (455)
+..|.+.|++++|.++|+++... +++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.++
T Consensus 272 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASL 349 (597)
T ss_dssp HHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHH
Confidence 33444566777777777776654 4688999999999999999999999999999876 33667889999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHH
Q 048235 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMK 251 (455)
Q Consensus 172 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 251 (455)
.+.|++++|..+++++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+..+.+..+|+.++.+|.+.|++++|.+
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999765 44789999999999999999999999999988777889999999999999999999999
Q ss_pred HHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 048235 252 LFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELL 331 (455)
Q Consensus 252 ~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 331 (455)
+|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+... .+..+|..+...|.+.|++++|
T Consensus 429 ~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 494 (597)
T 2xpi_A 429 AYTTAARLF-------------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTA 494 (597)
T ss_dssp HHHHHHHTT-------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhC-------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHH
Confidence 999999864 34789999999999999999999999999998542 3678999999999999999999
Q ss_pred HHHHHHHhhcC---CCCCh---HhHHHHHHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcchHHHH
Q 048235 332 EITWEHLARAD---RITPP---ALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQL 405 (455)
Q Consensus 332 ~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 405 (455)
.++|+++.+.. +..|+ ..+..+...+.+.|++++|+++++++....+. +...|..+...+...++.+++.+.
T Consensus 495 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~ 572 (597)
T 2xpi_A 495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN--DANVHTAIALVYLHKKIPGLAITH 572 (597)
T ss_dssp HHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999998763 22333 23444555556999999999999987643222 348888888887888888888888
Q ss_pred HHHhccccccccCCCchhHHHHHHh
Q 048235 406 LHEASSSLTTRNGSPYPVLQNLISS 430 (455)
Q Consensus 406 ~~~~~~~~~p~~~~~~~~l~~~~~~ 430 (455)
+.+.+. ++|+++.++..|+++|.+
T Consensus 573 ~~~~l~-~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 573 LHESLA-ISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHH-HCTTCHHHHHHHHHTTC-
T ss_pred HHHHHh-cCCCChHHHHHHHHHHhc
Confidence 877666 999999999999999864
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6.9e-29 Score=231.72 Aligned_cols=383 Identities=14% Similarity=0.050 Sum_probs=329.2
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048235 13 IAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSA 92 (455)
Q Consensus 13 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 92 (455)
+...+.+.|++++|++.++.+.+. .+.+...+..+...+...|++++|...++...+.. +.+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~----------------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~ 67 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ----------------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLA 67 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCch
Confidence 345678899999999999998752 25567788888889999999999999999998864 3478
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048235 93 TTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172 (455)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 172 (455)
.+|..+..++.+.|++++|...|+++....+.+..+|..+..++.+.|++++|...|+++.+.+ +.+...+..+...+.
T Consensus 68 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 8999999999999999999999999998887888899999999999999999999999999875 234556777889999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 048235 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKL 252 (455)
Q Consensus 173 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 252 (455)
..|++++|...|+++.+..+. +..+|..+...+...|++++|...|+++.+..+.+...|..+...+...|++++|...
T Consensus 147 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 225 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999987543 6889999999999999999999999999887788899999999999999999999999
Q ss_pred HHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 048235 253 FQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELL 331 (455)
Q Consensus 253 ~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 331 (455)
|++..... | +..++..+...|...|++++|.+.|+++.+.+. .+..++..+...+.+.|++++|
T Consensus 226 ~~~al~~~--------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 290 (388)
T 1w3b_A 226 YLRALSLS--------------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHhhC--------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence 99999854 5 688999999999999999999999999999532 2466888899999999999999
Q ss_pred HHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHhcc
Q 048235 332 EITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASS 411 (455)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 411 (455)
...++++.+..+..+. .+..+.....+.|++++|+..++++....+. ....|..+...+...++.+++...+.+.+.
T Consensus 291 ~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 291 EDCYNTALRLCPTHAD-SLNNLANIKREQGNIEEAVRLYRKALEVFPE--FAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHCTTCHH-HHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT--CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCcccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999988765543 2334444455899999999999987654332 347788888877788888888888877776
Q ss_pred ccccccCCCchhHHHHHHhHHh
Q 048235 412 SLTTRNGSPYPVLQNLISSCKD 433 (455)
Q Consensus 412 ~~~p~~~~~~~~l~~~~~~~~~ 433 (455)
++|+++.++..++.+|.+.|+
T Consensus 368 -~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 368 -ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp -TCTTCHHHHHHHHHHHHHTCC
T ss_pred -hCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999987663
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.8e-30 Score=246.89 Aligned_cols=192 Identities=13% Similarity=0.222 Sum_probs=179.2
Q ss_pred CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCC---------hhHHHHHHHHHHhc
Q 048235 52 RLEPD-IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK---------YNLVYEFFRKVQKS 121 (455)
Q Consensus 52 ~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~ 121 (455)
+..+. ...++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.|.++|++|...
T Consensus 20 ~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~ 99 (501)
T 4g26_A 20 AIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD 99 (501)
T ss_dssp ----CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh
Confidence 33333 346899999999999999999999999999999999999999999988765 57899999999988
Q ss_pred CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 048235 122 YI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYT 200 (455)
Q Consensus 122 ~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 200 (455)
+. ||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 100 G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~ 179 (501)
T 4g26_A 100 KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELA 179 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 77 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhc
Q 048235 201 GLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEH 243 (455)
Q Consensus 201 ~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~ 243 (455)
+||.+|++.|++++|.++|++|++. ..|+..||+.++..|+..
T Consensus 180 ~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 180 ALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999876 999999999999999864
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=4.6e-31 Score=251.04 Aligned_cols=202 Identities=16% Similarity=0.138 Sum_probs=153.1
Q ss_pred HHHHHHHHHhcCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HHH
Q 048235 111 VYEFFRKVQKSYI-P-NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK---------CEE 179 (455)
Q Consensus 111 a~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~---------~~~ 179 (455)
+..+.+.+.+... . ....++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. .+.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 3444455554433 2 2345777788888888888888888888888888888888888888776543 677
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048235 180 ALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258 (455)
Q Consensus 180 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 258 (455)
|.++|++|...|+.||..||++||.+|++.|++++|.++|++|.+. +.||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888888888888655 788888888888888888888888888888888
Q ss_pred cccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048235 259 DSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASR 324 (455)
Q Consensus 259 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 324 (455)
.| +.||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|..
T Consensus 169 ~G------------~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SE------------VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TT------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cC------------CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 88 7888888888888888888888888888888888888888888888777754
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.2e-25 Score=209.64 Aligned_cols=351 Identities=12% Similarity=0.044 Sum_probs=300.7
Q ss_pred CCC-HhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 048235 4 YPD-TVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQ 82 (455)
Q Consensus 4 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 82 (455)
.|+ ...+..+...+...|++++|...++.... ..+.+..+|..+...+.+.|++++|...|++
T Consensus 29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~----------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 92 (388)
T 1w3b_A 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK----------------QNPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------cCCCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344 44566777788899999999999999874 3367889999999999999999999999999
Q ss_pred HHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 048235 83 LKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAA 162 (455)
Q Consensus 83 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 162 (455)
+.+..+. +..+|..+..++.+.|++++|.+.|+++....+.+..++..+...+...|++++|.+.|+++.+.. +.+..
T Consensus 93 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 170 (388)
T 1w3b_A 93 ALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAV 170 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHH
Confidence 9987433 567899999999999999999999999998887788889999999999999999999999999874 34578
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 048235 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLE 242 (455)
Q Consensus 163 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 242 (455)
++..+...+...|++++|...|+++.+..+. +...+..+...+...|++++|...|++.....+.+..++..+..+|..
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 249 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH
Confidence 8999999999999999999999999987643 688899999999999999999999999987777789999999999999
Q ss_pred cCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048235 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILD 321 (455)
Q Consensus 243 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 321 (455)
.|++++|.+.|+++.+.. | +..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...
T Consensus 250 ~g~~~~A~~~~~~al~~~--------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 250 QGLIDLAIDTYRRAIELQ--------------PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp TTCHHHHHHHHHHHHHTC--------------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 999999999999999854 5 57889999999999999999999999999853 3467789999999
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHh
Q 048235 322 ASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFK 391 (455)
Q Consensus 322 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 391 (455)
+...|++++|...++++.+..+..+. ....+...+.+.|++++|+..++++....+. ....|..+..
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~--~~~a~~~lg~ 381 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAA-AHSNLASVLQQQGKLQEALMHYKEAIRISPT--FADAYSNMGN 381 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHH-HHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT--CHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHhHHH
Confidence 99999999999999999987654432 3344445556999999999999987643332 3356655554
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=2.7e-24 Score=204.59 Aligned_cols=308 Identities=12% Similarity=0.088 Sum_probs=267.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048235 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ 85 (455)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 85 (455)
+..++..+...+.+.|++++|+.+|+.+.. ..+.+..+|..+..++...|++++|...|+++.+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~----------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVD----------------GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 456788999999999999999999999985 2356789999999999999999999999999999
Q ss_pred cCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCH---HHHHHHH------------HHHHhcCChHHHHHHHH
Q 048235 86 QGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNA---LAYKVLV------------NTLWREGKTDEAVSAVE 150 (455)
Q Consensus 86 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li------------~~~~~~g~~~~a~~~~~ 150 (455)
.+.. +..++..+..+|.+.|++++|...|+++....+.+. .++..+. ..+...|++++|+..|+
T Consensus 89 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 89 LKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8644 688899999999999999999999999998776666 6766664 44889999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 048235 151 DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNL 230 (455)
Q Consensus 151 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 230 (455)
++.+.. +.+..++..++.+|...|++++|...++++.+... .+..++..+..+|...|++++|...|+++....+.+.
T Consensus 168 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 245 (450)
T 2y4t_A 168 KILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 245 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChH
Confidence 998874 45678889999999999999999999999988753 3788999999999999999999999999987667777
Q ss_pred HHHHHH------------HHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCc-----HHHHHHHHHHHHHcCCH
Q 048235 231 VTCNIM------------VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD-----IYTFNTMLDACAAEKRW 293 (455)
Q Consensus 231 ~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~~~~ 293 (455)
..+..+ ...|...|++++|..+|+++.+.. |+ ...|..+...+.+.|++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--------------p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--------------PSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------CSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------CcchHHHHHHHHHHHHHHHHCCCH
Confidence 777666 889999999999999999999854 54 45788889999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCh
Q 048235 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPP 347 (455)
Q Consensus 294 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 347 (455)
++|...++++.+.. +.+...+..+..+|...|++++|...++++.+..+..+.
T Consensus 312 ~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 364 (450)
T 2y4t_A 312 VEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQ 364 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHH
Confidence 99999999998843 225778999999999999999999999999987765543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.2e-24 Score=206.72 Aligned_cols=385 Identities=11% Similarity=-0.011 Sum_probs=265.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048235 7 TVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ 86 (455)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 86 (455)
+..+......+.+.|++++|+..|+++... .|+..+|..+..++.+.|++++|...|+++.+.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----------------~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 68 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL-----------------KEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL 68 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-----------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----------------CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 456778888999999999999999999863 478999999999999999999999999999987
Q ss_pred CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHH---------------------------------------
Q 048235 87 GQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNAL--------------------------------------- 127 (455)
Q Consensus 87 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------------------------- 127 (455)
++. +..++..+..++.+.|++++|...|+++....+++..
T Consensus 69 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 147 (514)
T 2gw1_A 69 KPD-YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQP 147 (514)
T ss_dssp CSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC------------------
T ss_pred ChH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCh
Confidence 643 6789999999999999999999999998776543322
Q ss_pred ----------------------------------------HHHHHHHHHHh---cCChHHHHHHHHHHHH-----CCC--
Q 048235 128 ----------------------------------------AYKVLVNTLWR---EGKTDEAVSAVEDMER-----RGI-- 157 (455)
Q Consensus 128 ----------------------------------------~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~~~-- 157 (455)
.+......+.. .|++++|..+|+++.+ ...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 227 (514)
T 2gw1_A 148 AKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227 (514)
T ss_dssp ---------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTST
T ss_pred hhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCc
Confidence 22222222332 6777777777777766 311
Q ss_pred ------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 048235 158 ------VGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLV 231 (455)
Q Consensus 158 ------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 231 (455)
+.+..++..+...+...|++++|...++++.+.... ..++..+...+...|++++|...++.+....+.+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 305 (514)
T 2gw1_A 228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSS 305 (514)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTH
T ss_pred cccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHH
Confidence 112345666677777777777777777777766533 666777777777777777777777777666666667
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 048235 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311 (455)
Q Consensus 232 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 311 (455)
++..+...|...|++++|...|+++.+.. +.+...+..+...|...|++++|..+++++.+... .+
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~ 371 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDKAKELD-------------PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EA 371 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHTC-------------SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cC
Confidence 77777777777777777777777777643 12456667777777777777777777777776321 13
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCh-----HhHHHHHHHHhh---ccchHHHHHHhhhcCCCCCccccH
Q 048235 312 AKRHLRMILDASRAGKVELLEITWEHLARADRITPP-----ALIKERFCNRLE---NKDYGSAISCLVSHPVSGSPEFSR 383 (455)
Q Consensus 312 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~ 383 (455)
...+..+...+.+.|++++|...++.+.+..+..+. ..+..+...+.. .|++++|+..++......+. +.
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~ 449 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR--SE 449 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT--CH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc--cH
Confidence 446666666677777777777777777665544432 123333444446 67777777777655422211 23
Q ss_pred HHHHHHHhhhcccCCcchHHHHHHHhccccccccCCCchhHHHHH
Q 048235 384 NAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQNLI 428 (455)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~ 428 (455)
..|..+...+...+..+++...+.+.+. ++|+++..+..+....
T Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 450 QAKIGLAQMKLQQEDIDEAITLFEESAD-LARTMEEKLQAITFAE 493 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH-hccccHHHHHHHHHHH
Confidence 5566666655566666666666655555 7777766665554433
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.6e-22 Score=190.92 Aligned_cols=365 Identities=13% Similarity=0.046 Sum_probs=291.6
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 048235 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLV 133 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 133 (455)
+.+...|..+...+.+.|++++|+.+|+++.+... .+..++..+..++...|+++.|...|+++....+.+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 56788999999999999999999999999998743 37889999999999999999999999999998888899999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCcHHH
Q 048235 134 NTLWREGKTDEAVSAVEDMERRGIVGSA---ALYYDL------------ARCLCSAGKCEEALMQMDKICKVANKPLVVS 198 (455)
Q Consensus 134 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 198 (455)
.+|.+.|++++|...|+++.+.+ +.+. ..+..+ ...+...|++++|...++++.+... .+..+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHH
Confidence 99999999999999999998865 2223 444444 4458899999999999999998764 37889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cH
Q 048235 199 YTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DI 277 (455)
Q Consensus 199 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~ 277 (455)
+..+..+|.+.|++++|...|+++.+..+.+..+|..+..+|...|++++|...|+++.... | +.
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------p~~~ 245 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--------------QDHK 245 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CChH
Confidence 99999999999999999999999987777889999999999999999999999999999854 5 45
Q ss_pred HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048235 278 YTFNTM------------LDACAAEKRWDDLELVYKRMLHHGLHFN-----AKRHLRMILDASRAGKVELLEITWEHLAR 340 (455)
Q Consensus 278 ~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 340 (455)
..+..+ ...|...|++++|..+|+++.+. .|+ ...+..+...+.+.|++++|...++.+.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555554 78899999999999999999984 344 34677888889999999999999999988
Q ss_pred cCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHH------------hhhcccC-----CcchHH
Q 048235 341 ADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFF------------KENSQHF-----GQDTLI 403 (455)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~------------~~~~~~~-----~~~~~~ 403 (455)
..+..+. .+..+...+...|++++|...++.+....+. +...|..+. ..+...+ ..+++.
T Consensus 324 ~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~ 400 (450)
T 2y4t_A 324 MEPDNVN-ALKDRAEAYLIEEMYDEAIQDYETAQEHNEN--DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII 400 (450)
T ss_dssp HCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS--CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH
T ss_pred hCcccHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc--hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH
Confidence 7655443 3444555556899999999999987643322 234555544 1122222 223566
Q ss_pred HHHHHhccccccccCCC----------chhHHHHHHhHHhhhhccCC
Q 048235 404 QLLHEASSSLTTRNGSP----------YPVLQNLISSCKDFLRTQSP 440 (455)
Q Consensus 404 ~~~~~~~~~~~p~~~~~----------~~~l~~~~~~~~~~~~a~~~ 440 (455)
+.+.+...+.+|++... ...++..|...|+..++...
T Consensus 401 ~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~y 447 (450)
T 2y4t_A 401 KAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKF 447 (450)
T ss_dssp HHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC---
T ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhc
Confidence 66766677789987653 23456777777777665543
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.2e-23 Score=200.57 Aligned_cols=368 Identities=11% Similarity=-0.020 Sum_probs=299.8
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 048235 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNT 135 (455)
Q Consensus 56 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 135 (455)
....|......+.+.|++++|+..|+++.+.+ |+..++..+..++.+.|+++.|...++++....+.+..+|..+..+
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 45677888899999999999999999999975 6899999999999999999999999999999888889999999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC--------------------------------------------------------
Q 048235 136 LWREGKTDEAVSAVEDMERRGIVG-------------------------------------------------------- 159 (455)
Q Consensus 136 ~~~~g~~~~a~~~~~~m~~~~~~~-------------------------------------------------------- 159 (455)
|...|++++|...|+++.+.+...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999987765211
Q ss_pred ----------------------CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----c--CC------CCcHHHHHH
Q 048235 160 ----------------------SAALYYDLARCLCS---AGKCEEALMQMDKICK-----V--AN------KPLVVSYTG 201 (455)
Q Consensus 160 ----------------------~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~-----~--~~------~~~~~~~~~ 201 (455)
+...+......+.. .|++++|...++++.+ . .. +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 12333333443443 8999999999999887 3 11 223567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHH
Q 048235 202 LIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281 (455)
Q Consensus 202 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~ 281 (455)
+...+...|++++|...|+++.+..+. ...+..+..+|...|++++|...++++.... +.+...+.
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~~ 308 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLD-------------SNNSSVYY 308 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-------------TTCTHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-------------cCCHHHHH
Confidence 999999999999999999999776544 8899999999999999999999999999854 23678899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhcc
Q 048235 282 TMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENK 361 (455)
Q Consensus 282 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (455)
.+...|...|++++|...++++.+.... +...+..+...+...|++++|...++.+.+..+..+.. +..+...+.+.|
T Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~la~~~~~~~ 386 (514)
T 2gw1_A 309 HRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEV-PNFFAEILTDKN 386 (514)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHH-HHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHH-HHHHHHHHHHCC
Confidence 9999999999999999999999985432 45678888888999999999999999999887766643 344455556899
Q ss_pred chHHHHHHhhhcCC----CCCccccHHHHHHHHhhhcc---cCCcchHHHHHHHhccccccccCCCchhHHHHHHhHHhh
Q 048235 362 DYGSAISCLVSHPV----SGSPEFSRNAWLKFFKENSQ---HFGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDF 434 (455)
Q Consensus 362 ~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 434 (455)
++++|+..++.+.. .+........|..+...+.. .+..+++...+.+.+. .+|+++.++..++.+|...|++
T Consensus 387 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~la~~~~~~g~~ 465 (514)
T 2gw1_A 387 DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK-LDPRSEQAKIGLAQMKLQQEDI 465 (514)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHhcCH
Confidence 99999998886542 22111112477777776666 6666677777766665 8999999999999999999999
Q ss_pred hhccCCcc
Q 048235 435 LRTQSPAP 442 (455)
Q Consensus 435 ~~a~~~~~ 442 (455)
.+|....+
T Consensus 466 ~~A~~~~~ 473 (514)
T 2gw1_A 466 DEAITLFE 473 (514)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887644
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=2e-20 Score=171.96 Aligned_cols=308 Identities=11% Similarity=0.061 Sum_probs=262.6
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048235 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ 85 (455)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 85 (455)
|+..+..+...+...|++++|+..|+.+... .+.+..+|..+...+...|++++|...|+++.+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 65 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG----------------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4667888999999999999999999999852 255788999999999999999999999999998
Q ss_pred cCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC---CCHHHHHHH------------HHHHHhcCChHHHHHHHH
Q 048235 86 QGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI---PNALAYKVL------------VNTLWREGKTDEAVSAVE 150 (455)
Q Consensus 86 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l------------i~~~~~~g~~~~a~~~~~ 150 (455)
.... +...+..+..++...|+++.|...|+++....+ .+...+..+ ...+...|++++|...++
T Consensus 66 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 144 (359)
T 3ieg_A 66 LKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLD 144 (359)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCC-cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 7543 678899999999999999999999999988766 566666666 578899999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 048235 151 DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNL 230 (455)
Q Consensus 151 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 230 (455)
++.+.. +.+...+..+..++...|++++|...++++.+... .+..++..+...+...|++++|...|+...+..+.+.
T Consensus 145 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 222 (359)
T 3ieg_A 145 KILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 222 (359)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccch
Confidence 998875 45678888999999999999999999999998753 3788999999999999999999999999987766666
Q ss_pred HHHHHH------------HHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCc-H----HHHHHHHHHHHHcCCH
Q 048235 231 VTCNIM------------VKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD-I----YTFNTMLDACAAEKRW 293 (455)
Q Consensus 231 ~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~-~----~~~~~li~~~~~~~~~ 293 (455)
..+..+ ...+...|++++|...++++.+.. |+ . ..+..+...+...|++
T Consensus 223 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 223 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--------------PSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------CSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------CCchHHHHHHHHHHHHHHHHccCH
Confidence 655433 667889999999999999999864 43 3 3355677889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCh
Q 048235 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPP 347 (455)
Q Consensus 294 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 347 (455)
++|...++++.+.. +.+..++..+...+...|++++|...|++..+..+..+.
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence 99999999999853 225678888888899999999999999999988765543
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=4.1e-21 Score=186.85 Aligned_cols=379 Identities=10% Similarity=0.022 Sum_probs=247.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048235 7 TVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ 86 (455)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 86 (455)
...|..+...+.+.|++++|++.|+++... .+.+..+|..+..+|.+.|++++|++.|+++.+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 88 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL----------------DPNEPVFYSNISACYISTGDLEKVIEFTTKALEI 88 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh----------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 456788888999999999999999999852 2567899999999999999999999999999997
Q ss_pred CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHH---------------------------------------
Q 048235 87 GQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNAL--------------------------------------- 127 (455)
Q Consensus 87 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------------------------- 127 (455)
+.. +..++..+..++...|++++|...|+.+.........
T Consensus 89 ~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 167 (537)
T 3fp2_A 89 KPD-HSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSL 167 (537)
T ss_dssp CTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHH
T ss_pred CCc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHH
Confidence 644 7888999999999999999999999644221111000
Q ss_pred ----------------------------HHHHHHHHHH--------hcCChHHHHHHHHHHHHCCCCCC------HHHHH
Q 048235 128 ----------------------------AYKVLVNTLW--------REGKTDEAVSAVEDMERRGIVGS------AALYY 165 (455)
Q Consensus 128 ----------------------------~~~~li~~~~--------~~g~~~~a~~~~~~m~~~~~~~~------~~~~~ 165 (455)
....+...+. ..|++++|..+++++.+...... ..++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 247 (537)
T 3fp2_A 168 ASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALC 247 (537)
T ss_dssp HHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
T ss_pred HHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHH
Confidence 1111111111 11366777777777765532110 22355
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 048235 166 DLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGL 245 (455)
Q Consensus 166 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 245 (455)
.+...+...|++++|...+++..+.. |+..++..+...+...|+++.|...|+++.+..+.+..+|..+...+...|+
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC
Confidence 56666677777777777777777654 3366677777777777777777777777766666667777777777777777
Q ss_pred hhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048235 246 FEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRA 325 (455)
Q Consensus 246 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 325 (455)
+++|...|+++.+.. +.+...|..+...|...|++++|..+++++.+... .+...+..+...+...
T Consensus 326 ~~~A~~~~~~a~~~~-------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 391 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLN-------------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDR 391 (537)
T ss_dssp HHHHHHHHHHHHHHC-------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHh
Confidence 777777777777653 12456677777777777777777777777776431 2344666666677777
Q ss_pred CChHHHHHHHHHHhhcCCCCChHh-----HHHHHHHHhhc----------cchHHHHHHhhhcCCCCCccccHHHHHHHH
Q 048235 326 GKVELLEITWEHLARADRITPPAL-----IKERFCNRLEN----------KDYGSAISCLVSHPVSGSPEFSRNAWLKFF 390 (455)
Q Consensus 326 g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 390 (455)
|++++|...++.+.+..+..+... .......+.+. |++++|+..+++.....+. +...|..+.
T Consensus 392 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~ 469 (537)
T 3fp2_A 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR--SEQAKIGLA 469 (537)
T ss_dssp TCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC--CHHHHHHHH
Confidence 777777777777665443322210 11111222244 7777777777765432221 235666666
Q ss_pred hhhcccCCcchHHHHHHHhccccccccCCCc
Q 048235 391 KENSQHFGQDTLIQLLHEASSSLTTRNGSPY 421 (455)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 421 (455)
..+...+..+++.+.+.+.+. ++|++....
T Consensus 470 ~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~ 499 (537)
T 3fp2_A 470 QLKLQMEKIDEAIELFEDSAI-LARTMDEKL 499 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HC--CHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH-hCCCcHHHH
Confidence 666666666666666655555 667665443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=1.7e-19 Score=165.70 Aligned_cols=316 Identities=15% Similarity=0.061 Sum_probs=253.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 048235 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNT 135 (455)
Q Consensus 56 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 135 (455)
|+..+..+...+...|++++|...|+++.+.... +..++..+...+...|+++.|...|+++....+.+..++..+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 4677888999999999999999999999987544 688899999999999999999999999998888788999999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 048235 136 LWREGKTDEAVSAVEDMERRGIV--GSAALYYDL------------ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTG 201 (455)
Q Consensus 136 ~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 201 (455)
+...|++++|...+++..+.... .+...+..+ ...+...|++++|...++++.+... .+..++..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHH
Confidence 99999999999999999887520 233444444 5788899999999999999998764 37888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHH
Q 048235 202 LIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTF 280 (455)
Q Consensus 202 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~ 280 (455)
+...+...|++++|...++++.+..+.+..++..+...|...|++++|...|++..+.. | +...+
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------------~~~~~~~ 225 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--------------QDHKRCF 225 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------TTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------ccchHHH
Confidence 99999999999999999999988888889999999999999999999999999999864 4 34433
Q ss_pred H------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 048235 281 N------------TMLDACAAEKRWDDLELVYKRMLHHGLHFNA----KRHLRMILDASRAGKVELLEITWEHLARADRI 344 (455)
Q Consensus 281 ~------------~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 344 (455)
. .+...+.+.|++++|...++++.+.... +. ..+..+...+...|++++|...++...+..+.
T Consensus 226 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 304 (359)
T 3ieg_A 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD 304 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 3 2256688899999999999998884322 22 22445667788999999999999999887655
Q ss_pred CChHhHHHHHHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHh
Q 048235 345 TPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFK 391 (455)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 391 (455)
.+. .+..+...+...|++++|...+++.....+. +...|..+..
T Consensus 305 ~~~-~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~l~~ 348 (359)
T 3ieg_A 305 NVN-ALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN--DQQIREGLEK 348 (359)
T ss_dssp CHH-HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT--CHHHHHHHHH
T ss_pred cHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChHHHHHHHH
Confidence 443 2334444455888888888888876543322 2244544444
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1.3e-20 Score=183.24 Aligned_cols=368 Identities=12% Similarity=0.008 Sum_probs=281.1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 048235 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNT 135 (455)
Q Consensus 56 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 135 (455)
....|..+...+.+.|++++|...|+++.+..+. +..++..+..++.+.|++++|.+.|+++....+.+..++..+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 4577888999999999999999999999997644 789999999999999999999999999999888899999999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCC-------------------------------------CCHH----------------
Q 048235 136 LWREGKTDEAVSAVEDMERRGIV-------------------------------------GSAA---------------- 162 (455)
Q Consensus 136 ~~~~g~~~~a~~~~~~m~~~~~~-------------------------------------~~~~---------------- 162 (455)
+...|++++|...|+.+ ..... |+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999999633 21110 1111
Q ss_pred --------------HHHHHHHHHH--------hcCCHHHHHHHHHHHHHcCCCCc------HHHHHHHHHHHHhcCCHHH
Q 048235 163 --------------LYYDLARCLC--------SAGKCEEALMQMDKICKVANKPL------VVSYTGLIQACLDSGNIQN 214 (455)
Q Consensus 163 --------------~~~~l~~~~~--------~~g~~~~a~~~~~~m~~~~~~~~------~~~~~~li~~~~~~~~~~~ 214 (455)
....+...+. ..|++++|..+++++.+..+... ..++..+...+...|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 1111111111 12478899999999887654311 2356777788889999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHH
Q 048235 215 AAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294 (455)
Q Consensus 215 a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 294 (455)
|...|+.+.... |+...+..+...+...|++++|...|+++.+.. +.+..+|..+...+...|+++
T Consensus 262 A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 262 AQVLLQESINLH-PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-------------PEYPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-------------TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhcC-CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-------------CCCHHHHHHHHHHHHhcCCHH
Confidence 999999997754 448899999999999999999999999999864 236888999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcC
Q 048235 295 DLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHP 374 (455)
Q Consensus 295 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 374 (455)
+|...++++.+.... +...+..+...+...|++++|...++++.+..+..+.. +..+...+...|++++|+..++.+.
T Consensus 328 ~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 328 NAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV-PTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH-HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999985422 35678888889999999999999999999988776643 3344455568999999999888653
Q ss_pred C----CCCccccHHHHHHHHhhhccc----------CCcchHHHHHHHhccccccccCCCchhHHHHHHhHHhhhhccCC
Q 048235 375 V----SGSPEFSRNAWLKFFKENSQH----------FGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQSP 440 (455)
Q Consensus 375 ~----~~~~~~~~~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 440 (455)
. .+........+......+... +..+++...+.+.+. .+|+++.++..++.+|...|++.+|...
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE-LDPRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 2 111111111122222222333 555577777766665 8999999999999999999999988776
Q ss_pred cc
Q 048235 441 AP 442 (455)
Q Consensus 441 ~~ 442 (455)
.+
T Consensus 485 ~~ 486 (537)
T 3fp2_A 485 FE 486 (537)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=9.7e-20 Score=165.40 Aligned_cols=287 Identities=11% Similarity=0.048 Sum_probs=218.4
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHH
Q 048235 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVL 132 (455)
Q Consensus 53 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 132 (455)
.+.+...+..+...+...|++++|..+|+++.+.... +...+..++..+...|++++|..+++++....+.+..+|..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 3566777778888888888888888888888876543 566666777778888888888888888888777778888888
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 048235 133 VNTLWREG-KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211 (455)
Q Consensus 133 i~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 211 (455)
...+...| ++++|...|++..+.. +.+...+..+..++...|++++|...++++.+.... +...+..+...|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence 88888888 8888888888887764 334566777888888888888888888888877543 45566668888888888
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcC
Q 048235 212 IQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291 (455)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 291 (455)
+++|...+++..+..+.+...+..+...+...|++++|...++++.+..... ........+..++..+...|...|
T Consensus 175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI----GNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTT----SCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhc----cccccccHHHHHHHHHHHHHHHhc
Confidence 8888888888887777778888888888888888888888888887642000 000001234577888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCh
Q 048235 292 RWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPP 347 (455)
Q Consensus 292 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 347 (455)
++++|...++++.+... .+...+..+...+.+.|++++|...+++..+..+..+.
T Consensus 251 ~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 305 (330)
T 3hym_B 251 KYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305 (330)
T ss_dssp CHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH
T ss_pred CHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchH
Confidence 88888888888887432 24557777788888888888888888888877765544
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=3.4e-19 Score=161.81 Aligned_cols=291 Identities=9% Similarity=-0.075 Sum_probs=220.7
Q ss_pred CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048235 88 QKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167 (455)
Q Consensus 88 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 167 (455)
.+.+...+..+...+...|+++.|.++|+++....+.+..++..++.++...|++++|..+++++.+.. +.+...+..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 345777888888999999999999999999998888888888889999999999999999999999875 3456778889
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh
Q 048235 168 ARCLCSAG-KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLF 246 (455)
Q Consensus 168 ~~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 246 (455)
...+...| ++++|...+++..+.... +...+..+...+...|++++|...|+++.+..+.+...+..+...|...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 99999999 999999999999987643 5778899999999999999999999999887777788888999999999999
Q ss_pred hHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Q 048235 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACA----AEKRWDDLELVYKRMLHH-GLHFNAKRHLRMILD 321 (455)
Q Consensus 247 ~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~ 321 (455)
++|...++++.+.... ..........+..... ....++++.++....... .......++..+...
T Consensus 176 ~~A~~~~~~al~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~ 245 (330)
T 3hym_B 176 KLAERFFSQALSIAPE----------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV 245 (330)
T ss_dssp HHHHHHHHHHHTTCTT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH
Confidence 9999999999876421 1111111111111111 111133344433322221 112335688888999
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhh
Q 048235 322 ASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKEN 393 (455)
Q Consensus 322 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 393 (455)
+...|++++|...+++..+..+..+.. +..+.....+.|++++|...+++.....+. +...|..+...+
T Consensus 246 ~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~ 314 (330)
T 3hym_B 246 CRKLKKYAEALDYHRQALVLIPQNAST-YSAIGYIHSLMGNFENAVDYFHTALGLRRD--DTFSVTMLGHCI 314 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCSHH-HHHHHHHHHHHTCHHHHHHHHHTTTTTCSC--CHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhhCccchHH-HHHHHHHHHHhccHHHHHHHHHHHHccCCC--chHHHHHHHHHH
Confidence 999999999999999999888766543 344555556899999999999988754433 335666666543
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=8.4e-20 Score=168.66 Aligned_cols=266 Identities=14% Similarity=-0.000 Sum_probs=175.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 048235 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNT 135 (455)
Q Consensus 56 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 135 (455)
+...+..+...+.+.|++++|...|+++.+.... +..++..+..++...|+++.|...|+++....+.+..++..+..+
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 141 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 141 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3556777777788888888888888888776433 667777777778888888888888888777766777778888888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHHHH
Q 048235 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYD---------------LARCLCSAGKCEEALMQMDKICKVANKP-LVVSY 199 (455)
Q Consensus 136 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~---------------l~~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~ 199 (455)
|...|++++|...++++.+..... ...+.. .+..+...|++++|...++++.+..... +..++
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 888888888888888777654221 111110 1222236677777777777766654321 45666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHH
Q 048235 200 TGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279 (455)
Q Consensus 200 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~ 279 (455)
..+...|...|++++|...|+++....+.+..+|..+...+...|++++|...|+++.+.. +.+...
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------~~~~~~ 287 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-------------PGYIRS 287 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------TTCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------CCcHHH
Confidence 6677777777777777777777665555566667777777777777777777777766643 224566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhcCChHHHHHHHH
Q 048235 280 FNTMLDACAAEKRWDDLELVYKRMLHHGLHF----------NAKRHLRMILDASRAGKVELLEITWE 336 (455)
Q Consensus 280 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p----------~~~~~~~ll~~~~~~g~~~~a~~~~~ 336 (455)
+..+...|.+.|++++|...|+++.+..... ...++..+..++...|+.++|..+++
T Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 288 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 6666677777777777777777666521110 13556666666666777766666654
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=3.9e-19 Score=164.08 Aligned_cols=268 Identities=12% Similarity=0.007 Sum_probs=183.5
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048235 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVN 134 (455)
Q Consensus 55 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 134 (455)
.+...|..+...+.+.|++++|...|+++.+.... +..++..+..++...|+++.|...|+++....+.+..+|..+..
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 35566888888888888888888888888876543 67788888888888888888888888888777777888888888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHH
Q 048235 135 TLWREGKTDEAVSAVEDMERRGIV---------GSAALYYDLARCLCSAGKCEEALMQMDKICKVANK-PLVVSYTGLIQ 204 (455)
Q Consensus 135 ~~~~~g~~~~a~~~~~~m~~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~ 204 (455)
+|...|++++|+..++++.+.... .....+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 888888888888888888764311 01122333466777777777777777777776432 14667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHH
Q 048235 205 ACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTM 283 (455)
Q Consensus 205 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~l 283 (455)
.|...|++++|...|+++.+..+.+..+|..+..+|...|++++|...|+++.+.. | +..+|..+
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~l 287 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--------------PGFIRSRYNL 287 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------CCchHHHHHH
Confidence 77777777777777777766666677777777777777777777777777777743 4 46677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC---C--------CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048235 284 LDACAAEKRWDDLELVYKRMLHHGLH---F--------NAKRHLRMILDASRAGKVELLEITWEH 337 (455)
Q Consensus 284 i~~~~~~~~~~~a~~~~~~m~~~~~~---p--------~~~~~~~ll~~~~~~g~~~~a~~~~~~ 337 (455)
...|...|++++|...|+++.+.... + +...+..+..++...|+.+.+..+...
T Consensus 288 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 288 GISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 77777777777777777777662100 0 134555566666666666666555443
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=2.5e-19 Score=165.40 Aligned_cols=278 Identities=7% Similarity=-0.053 Sum_probs=223.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048235 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ 85 (455)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 85 (455)
+...|..+...+.+.|++++|++.|+++... .+.+..+|..+...+...|++++|...|+++.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ----------------DPGDAEAWQFLGITQAENENEQAAIVALQRCLE 127 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4556888999999999999999999999852 256789999999999999999999999999998
Q ss_pred cCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCH----------HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048235 86 QGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNA----------LAYKVLVNTLWREGKTDEAVSAVEDMERR 155 (455)
Q Consensus 86 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 155 (455)
.... +..++..+..+|...|++++|...|+++....+.+. ..+..+...+...|++++|...++++.+.
T Consensus 128 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 206 (365)
T 4eqf_A 128 LQPN-NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ 206 (365)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH
T ss_pred cCCC-CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 7543 688999999999999999999999999987644322 23345588999999999999999999987
Q ss_pred CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 048235 156 GIV-GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCN 234 (455)
Q Consensus 156 ~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 234 (455)
... .+..++..+...|...|++++|...+++..+.... +..++..+..+|...|++++|...|+++.+..+.+..++.
T Consensus 207 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 285 (365)
T 4eqf_A 207 NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRY 285 (365)
T ss_dssp SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH
Confidence 532 16788999999999999999999999999987643 6889999999999999999999999999887778899999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048235 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKR 302 (455)
Q Consensus 235 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 302 (455)
.+..+|...|++++|...|+++.+......... .......+...|..+..++...|+.+.+..+.++
T Consensus 286 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 286 NLGISCINLGAYREAVSNFLTALSLQRKSRNQQ-QVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHCC-------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCc-ccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999999999999988541000000 0000001357899999999999999988877654
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=9.2e-19 Score=161.66 Aligned_cols=278 Identities=10% Similarity=-0.021 Sum_probs=230.6
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048235 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ 85 (455)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 85 (455)
+..++..+...+.+.|++++|+..|+++... .+.+..+|..+...+...|++++|...|+++.+
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 126 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ----------------DPKHMEAWQYLGTTQAENEQELLAISALRRCLE 126 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 3566888999999999999999999999853 356788999999999999999999999999998
Q ss_pred cCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHH---------------HHHHHhcCChHHHHHHHH
Q 048235 86 QGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVL---------------VNTLWREGKTDEAVSAVE 150 (455)
Q Consensus 86 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l---------------i~~~~~~g~~~~a~~~~~ 150 (455)
.... +..++..+..++...|+++.|...|+++....+.+...+..+ +..+...|++++|...++
T Consensus 127 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 205 (368)
T 1fch_A 127 LKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFL 205 (368)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHH
Confidence 7643 788999999999999999999999999988766555444322 444448999999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048235 151 DMERRGIVG-SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPN 229 (455)
Q Consensus 151 ~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 229 (455)
++.+..... +..++..+...+...|++++|...++++.+... .+..++..+...+...|++++|...|+++.+..+.+
T Consensus 206 ~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 284 (368)
T 1fch_A 206 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 284 (368)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 998875322 578889999999999999999999999988753 368899999999999999999999999998877788
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048235 230 LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303 (455)
Q Consensus 230 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 303 (455)
..++..+..+|...|++++|...|+++.+..... .............+|..+..+|...|+.++|..++++.
T Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 285 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKS--RGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--CCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 9999999999999999999999999998864100 00000000012688999999999999999999988643
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=2.4e-16 Score=151.33 Aligned_cols=370 Identities=9% Similarity=-0.037 Sum_probs=287.9
Q ss_pred CHhhHHHHHHHHHh----cCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHh----cCCHHHHH
Q 048235 6 DTVAYRSIAVTLGQ----AGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVR----RKQWEGAF 77 (455)
Q Consensus 6 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~ 77 (455)
++.++..+...|.. .+++++|+..|++..+ .-+..++..|...|.. .+++++|.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~------------------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE------------------QGYTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 55667777777777 8999999999999886 3467888889999998 89999999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCChHHHHHHH
Q 048235 78 WVLQQLKQQGQKPSATTYGLVMEVMLA----CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWR----EGKTDEAVSAV 149 (455)
Q Consensus 78 ~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~ 149 (455)
..|++..+.| +...+..|...|.. .+++++|...|++....+ +..++..|...|.. .+++++|++.|
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999998875 56677778788887 789999999999987763 67788888888887 78999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 048235 150 EDMERRGIVGSAALYYDLARCLCS----AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD----SGNIQNAAYIFNQ 221 (455)
Q Consensus 150 ~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~ 221 (455)
++..+.| +...+..+...|.. .++.++|...|++..+.+ +...+..+...|.. .+++++|...|++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9998875 56777888888887 899999999999988875 56677788888886 7899999999998
Q ss_pred HHhcCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHc-----CC
Q 048235 222 MKNFCSPNLVTCNIMVKAYLE----HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE-----KR 292 (455)
Q Consensus 222 ~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----~~ 292 (455)
..+. .+...+..+...|.. .+++++|..+|++..+.| +...+..+...|... ++
T Consensus 249 a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---------------~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 249 SAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---------------NSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp HHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---------------CHHHHHHHHHHHHHCBTTBCCC
T ss_pred HHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHcCCCCCcCC
Confidence 8653 556677778888887 899999999999998765 456677778888877 89
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhh----ccchHH
Q 048235 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG---KVELLEITWEHLARADRITPPALIKERFCNRLE----NKDYGS 365 (455)
Q Consensus 293 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 365 (455)
.++|..+|++..+.| +...+..+-..|...| ++++|.+.|++..+.+ .+. ....+...+.. .+++++
T Consensus 312 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~--~~~-a~~~Lg~~y~~g~g~~~~~~~ 385 (490)
T 2xm6_A 312 REQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG--EKA-AQFNLGNALLQGKGVKKDEQQ 385 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--CHH-HHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--CHH-HHHHHHHHHHcCCCCCCCHHH
Confidence 999999999999875 3456667777776656 7889999999988763 222 23333343445 689999
Q ss_pred HHHHhhhcCCCCCccccHHHHHHHHhhhcc----cCCcchHHHHHHHhccccc---cccCCCchhHHHHHHhHH
Q 048235 366 AISCLVSHPVSGSPEFSRNAWLKFFKENSQ----HFGQDTLIQLLHEASSSLT---TRNGSPYPVLQNLISSCK 432 (455)
Q Consensus 366 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~ 432 (455)
|+..++.......+ ..+..+...+.. .+..+++...+.+.+. .+ |+++.+...|+.++.+..
T Consensus 386 A~~~~~~A~~~~~~----~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~~~~~~~~~~a~~~l~~~~~~~~ 454 (490)
T 2xm6_A 386 AAIWMRKAAEQGLS----AAQVQLGEIYYYGLGVERDYVQAWAWFDTAST-NDMNLFGTENRNITEKKLTAKQL 454 (490)
T ss_dssp HHHHHHHHHHTTCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-HHCCHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHhCCCH----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CCCCCcCCHHHHHHHHhcCHhHH
Confidence 99999987654322 566666555443 3344466666655555 77 558888888888776544
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=2.5e-18 Score=155.85 Aligned_cols=267 Identities=9% Similarity=-0.049 Sum_probs=204.4
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 048235 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNT 135 (455)
Q Consensus 56 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 135 (455)
+...+..+...+...|++++|..+|+++.+.... +...+..+..++...|+++.|...|+++....+.+..++..+..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 5567788889999999999999999999987544 778888899999999999999999999998888889999999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 048235 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDL--------------AR-CLCSAGKCEEALMQMDKICKVANKPLVVSYT 200 (455)
Q Consensus 136 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 200 (455)
+...|++++|...++++.+.... +...+..+ .. .+...|++++|...++++.+.... +..++.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHH
Confidence 99999999999999999886422 22222222 22 256677788888888887776533 667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHH
Q 048235 201 GLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTF 280 (455)
Q Consensus 201 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~ 280 (455)
.+...+...|++++|...++++.+..+.+..++..+...+...|++++|...|+++.+.. +.+..++
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------~~~~~~~ 243 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-------------PGYVRVM 243 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------TTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------CCCHHHH
Confidence 788888888888888888888776666677778888888888888888888888877753 2256777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048235 281 NTMLDACAAEKRWDDLELVYKRMLHHGLHF-----------NAKRHLRMILDASRAGKVELLEITWEHL 338 (455)
Q Consensus 281 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 338 (455)
..+...|...|++++|.+.++++.+..... +...+..+..++.+.|++++|..+++..
T Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 244 YNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 777778888888888888888777632111 2456666777777778888777776644
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=3.1e-18 Score=155.24 Aligned_cols=268 Identities=10% Similarity=-0.021 Sum_probs=228.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048235 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ 85 (455)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 85 (455)
+...+......+...|++++|+..|+++... .+.+..+|..+...+...|++++|...|+++.+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 83 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA----------------APEREEAWRSLGLTQAENEKDGLAIIALNHARM 83 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3456777888999999999999999999852 255788999999999999999999999999998
Q ss_pred cCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHH--------------HH-HHHhcCChHHHHHHHH
Q 048235 86 QGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVL--------------VN-TLWREGKTDEAVSAVE 150 (455)
Q Consensus 86 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~ 150 (455)
.... +..++..+...+...|+++.|.+.++++....+.+...+..+ .. .+...|++++|...++
T Consensus 84 ~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (327)
T 3cv0_A 84 LDPK-DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH 162 (327)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHH
T ss_pred cCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHH
Confidence 7533 788899999999999999999999999988766555555544 33 4778899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 048235 151 DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNL 230 (455)
Q Consensus 151 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 230 (455)
++.+.. +.+...+..+...+...|++++|...++++.+... .+..++..+...+...|++++|...|+++.+..+.+.
T Consensus 163 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 240 (327)
T 3cv0_A 163 AALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV 240 (327)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 998875 34678889999999999999999999999988764 3688899999999999999999999999988777889
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-----------cHHHHHHHHHHHHHcCCHHHHHHH
Q 048235 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-----------DIYTFNTMLDACAAEKRWDDLELV 299 (455)
Q Consensus 231 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-----------~~~~~~~li~~~~~~~~~~~a~~~ 299 (455)
.++..+..+|...|++++|.+.|+++.+.. ... +...|..+..++...|++++|..+
T Consensus 241 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 241 RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ------------VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC------------CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999999999999999998865 111 477899999999999999999999
Q ss_pred HHHHH
Q 048235 300 YKRML 304 (455)
Q Consensus 300 ~~~m~ 304 (455)
+++..
T Consensus 309 ~~~~l 313 (327)
T 3cv0_A 309 YAQNV 313 (327)
T ss_dssp TTCCS
T ss_pred HHHHH
Confidence 87544
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=7.3e-17 Score=154.26 Aligned_cols=358 Identities=13% Similarity=0.022 Sum_probs=252.3
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C--CCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhc----
Q 048235 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ-----G--QKP-SATTYGLVMEVMLACGKYNLVYEFFRKVQKS---- 121 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 121 (455)
......||.|...+...|++++|++.|++..+. + ..| ...+|+.+..+|...|++++|...++++...
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 345678999999999999999999999987652 1 122 4678889999999999999999999887542
Q ss_pred ----CCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcCC
Q 048235 122 ----YIPNALAYKVLVNTLWRE--GKTDEAVSAVEDMERRGIVGSAALYYDLARC---LCSAGKCEEALMQMDKICKVAN 192 (455)
Q Consensus 122 ----~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~~ 192 (455)
.+....++..+..++... +++++|+..|++..+.+ +-++..+..+..+ +...++.++|++.+++..+..+
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 113456777766666654 57999999999998875 2234455544444 3456788889999998888754
Q ss_pred CCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhc
Q 048235 193 KPLVVSYTGLIQACLD----SGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD 268 (455)
Q Consensus 193 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 268 (455)
. +..++..+...+.. .+++++|.+.+++.....+.+..++..+...|...|++++|...+++..+..
T Consensus 207 ~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------- 277 (472)
T 4g1t_A 207 D-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-------- 277 (472)
T ss_dssp S-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------
T ss_pred c-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--------
Confidence 3 56666666655554 4678899999999888788889999999999999999999999999999854
Q ss_pred cCCCCCC-cHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 048235 269 KKGLVIP-DIYTFNTMLDACAAE-------------------KRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV 328 (455)
Q Consensus 269 ~~~~~~p-~~~~~~~li~~~~~~-------------------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 328 (455)
| +..++..+...|... +..+.|...+++..+.... +..++..+...+...|++
T Consensus 278 ------p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 278 ------PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQY 350 (472)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCH
T ss_pred ------CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccH
Confidence 5 566777766665432 3356788888888774321 234677788889999999
Q ss_pred HHHHHHHHHHhhcCCCCChHh-HHHHHHHH--hhccchHHHHHHhhhcC-CCCCccccHHHHHHHHhhhcccCCcchHHH
Q 048235 329 ELLEITWEHLARADRITPPAL-IKERFCNR--LENKDYGSAISCLVSHP-VSGSPEFSRNAWLKFFKENSQHFGQDTLIQ 404 (455)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 404 (455)
++|...|++.++..+.+.... +...+..+ ...|++++|+..+++.. ..+.. ..+...+. .++
T Consensus 351 ~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~----~~~~~~~~----------~l~ 416 (472)
T 4g1t_A 351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS----REKEKMKD----------KLQ 416 (472)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC----HHHHHHHH----------HHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc----HHHHHHHH----------HHH
Confidence 999999999988765443321 11122222 37899999999888765 33322 22222222 233
Q ss_pred HHHHhccccccccCCCchhHHHHHHhHHhhhhccCCcc
Q 048235 405 LLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQSPAP 442 (455)
Q Consensus 405 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 442 (455)
...+...+.+|+++.++..||.+|...|++.+|....+
T Consensus 417 ~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp HHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34445556899999999999999999999999988855
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=6.4e-17 Score=156.94 Aligned_cols=398 Identities=10% Similarity=0.054 Sum_probs=281.6
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048235 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ 85 (455)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 85 (455)
|..+|..++. +.+.|++++|..+|+++.. ..+.+...|..++..+.+.|++++|..+|+++..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~----------------~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~ 74 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVA----------------QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM 74 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHT----------------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHH----------------HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 5668888888 4789999999999999984 3466788999999999999999999999999998
Q ss_pred cCCCCCHhhHHHHHHH-HHHcCChhHHHH----HHHHHHhc-C--CCCHHHHHHHHHHHHh---------cCChHHHHHH
Q 048235 86 QGQKPSATTYGLVMEV-MLACGKYNLVYE----FFRKVQKS-Y--IPNALAYKVLVNTLWR---------EGKTDEAVSA 148 (455)
Q Consensus 86 ~~~~p~~~~~~~l~~~-~~~~~~~~~a~~----~~~~~~~~-~--~~~~~~~~~li~~~~~---------~g~~~~a~~~ 148 (455)
.. |+...|...+.. ....|+.+.|.+ +|+..... + +.+...|...+..... .|+++.|..+
T Consensus 75 ~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (530)
T 2ooe_A 75 KV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRV 152 (530)
T ss_dssp TC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHH
T ss_pred cC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHH
Confidence 63 677777777653 345678877665 77766543 2 3567888888877655 6899999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHH-------------HhcCCHHHHHHHHHHHH------HcC---CCCc--------HHH
Q 048235 149 VEDMERRGIVGSAALYYDLARCL-------------CSAGKCEEALMQMDKIC------KVA---NKPL--------VVS 198 (455)
Q Consensus 149 ~~~m~~~~~~~~~~~~~~l~~~~-------------~~~g~~~~a~~~~~~m~------~~~---~~~~--------~~~ 198 (455)
|++..+.........|....... ...+++..|..++..+. +.. ++|+ ...
T Consensus 153 y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 232 (530)
T 2ooe_A 153 YQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232 (530)
T ss_dssp HHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence 99998732111123343322211 12345677777666532 111 2333 245
Q ss_pred HHHHHHHHHhc----CCH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-------cCChh-------HHHHHHHHH
Q 048235 199 YTGLIQACLDS----GNI----QNAAYIFNQMKNFCSPNLVTCNIMVKAYLE-------HGLFE-------EAMKLFQEM 256 (455)
Q Consensus 199 ~~~li~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m 256 (455)
|...+...... ++. ..+..+|++.....+.+...|..++..+.. .|+++ +|..+|++.
T Consensus 233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~A 312 (530)
T 2ooe_A 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA 312 (530)
T ss_dssp HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHH
Confidence 55555433221 232 477889999887777889999999988876 79987 899999999
Q ss_pred HhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHhcCChHHHHH
Q 048235 257 AEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN-A-KRHLRMILDASRAGKVELLEI 333 (455)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~-~~~~~ll~~~~~~g~~~~a~~ 333 (455)
.+. ..| +...|..++..+.+.|++++|..+|+++.+ +.|+ . ..|..+...+.+.|++++|..
T Consensus 313 l~~-------------~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 313 IST-------------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp TTT-------------TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-------------hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 863 225 688999999999999999999999999999 4454 2 478888888889999999999
Q ss_pred HHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHhcccc
Q 048235 334 TWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSL 413 (455)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 413 (455)
+|++..+..+..+...+..........|+.++|..+++......+. +..+|..+.......+..+++...+.+.+. .
T Consensus 378 ~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~--~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~-~ 454 (530)
T 2ooe_A 378 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD--IPEYVLAYIDYLSHLNEDNNTRVLFERVLT-S 454 (530)
T ss_dssp HHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHTTTTCHHHHHHHHHHHHH-S
T ss_pred HHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhCCCHhhHHHHHHHHHh-c
Confidence 9999998765544322221122222589999999999876533322 348898888865666666677777766665 5
Q ss_pred ccccCC----CchhHHHHHHhHHhhhhccCC
Q 048235 414 TTRNGS----PYPVLQNLISSCKDFLRTQSP 440 (455)
Q Consensus 414 ~p~~~~----~~~~l~~~~~~~~~~~~a~~~ 440 (455)
.|.++. .+...+......|+.+.+..+
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~ 485 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKV 485 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 565554 444445666666777666544
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=4.4e-17 Score=155.78 Aligned_cols=386 Identities=11% Similarity=-0.025 Sum_probs=252.6
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048235 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLK 84 (455)
Q Consensus 5 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 84 (455)
.-+..||.+...+...|++++|++.|++..+...+ ...+...+....+|+.+..+|...|++++|...+++..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~-------~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQ-------EHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK 121 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------HSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-------cCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 33567999999999999999999999987541000 00001223456789999999999999999999999886
Q ss_pred HcC------CCC-CHhhHHHHHHHHHHc--CChhHHHHHHHHHHhcCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHH
Q 048235 85 QQG------QKP-SATTYGLVMEVMLAC--GKYNLVYEFFRKVQKSYIPNALAYKVLVNT---LWREGKTDEAVSAVEDM 152 (455)
Q Consensus 85 ~~~------~~p-~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~a~~~~~~m 152 (455)
+.. ..+ ...++.....++... +++++|.+.|++.....|.+...+..+..+ +...++.++|++.+++.
T Consensus 122 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~a 201 (472)
T 4g1t_A 122 HVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA 201 (472)
T ss_dssp HHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHH
T ss_pred HHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 531 111 345566555555554 468999999999998877777777776655 34567888999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 048235 153 ERRGIVGSAALYYDLARCLCS----AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP 228 (455)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 228 (455)
.+.+ +.+..++..+...+.. .++.++|...+++....... +..++..+...|...|++++|...+++..+..|.
T Consensus 202 l~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 279 (472)
T 4g1t_A 202 IRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279 (472)
T ss_dssp HHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence 8875 3345566656555544 46788999999998887643 6788899999999999999999999999887778
Q ss_pred CHHHHHHHHHHHHhc-------------------CChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHH
Q 048235 229 NLVTCNIMVKAYLEH-------------------GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289 (455)
Q Consensus 229 ~~~~~~~li~~~~~~-------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 289 (455)
+..++..+..+|... +..+.|...+++..+.. +.+..++..+...|..
T Consensus 280 ~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------------~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-------------DNLFRVCSILASLHAL 346 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-------------TTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-------------CchhhhhhhHHHHHHH
Confidence 888888887776432 33567888888888754 2356678889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHH-HHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHH
Q 048235 290 EKRWDDLELVYKRMLHHGLHFNAK--RHLRMILD-ASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSA 366 (455)
Q Consensus 290 ~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 366 (455)
.|++++|...|++..+....+... .+..+... ....|+.++|...|++.++..+.... .......+. .-+
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~--~~~~~~~l~-----~~~ 419 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE--KEKMKDKLQ-----KIA 419 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH--HHHHHHHHH-----HHH
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH--HHHHHHHHH-----HHH
Confidence 999999999999999854433321 22222222 35789999999999999887765432 111111110 011
Q ss_pred HHHhhhcCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHhccccccccCCCchhHHH
Q 048235 367 ISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQN 426 (455)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 426 (455)
...+...|..+ .+|..+..++...|..+++++.+.+.+. ..|.+|.+...+|+
T Consensus 420 ~~~l~~~p~~~------~~~~~LG~~~~~~g~~~~A~~~y~kALe-~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 420 KMRLSKNGADS------EALHVLAFLQELNEKMQQADEDSERGLE-SGSLIPSASSWNGE 472 (472)
T ss_dssp HHHHHHCC-CT------THHHHHHHHHHHHHHCC--------------------------
T ss_pred HHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCCcHhhcCCC
Confidence 12233334322 6777777776777777788887776665 89999988877763
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=2.9e-17 Score=145.90 Aligned_cols=247 Identities=12% Similarity=0.153 Sum_probs=131.3
Q ss_pred HHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh
Q 048235 16 TLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPD--IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSAT 93 (455)
Q Consensus 16 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 93 (455)
.....|+++.|++.++..... .|+ ......+.++|...|+++.|+..++. .-+|+..
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~-----------------~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~ 66 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS-----------------SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQ 66 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC-----------------SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccC-----------------CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHH
Confidence 344456666666666655421 222 23444555666666666666654433 1234455
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048235 94 TYGLVMEVMLACGKYNLVYEFFRKVQKSY--IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171 (455)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 171 (455)
++..+...+...++.+.|.+.++++.... +.+...+..+..++...|++++|++.+++ +.+...+..++..+
T Consensus 67 a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~ 140 (291)
T 3mkr_A 67 AVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQIL 140 (291)
T ss_dssp HHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHH
Confidence 55555556666666666666666654432 33445555555666666666666666654 23445555566666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhH
Q 048235 172 CSAGKCEEALMQMDKICKVANKPLVVS---YTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEE 248 (455)
Q Consensus 172 ~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 248 (455)
.+.|++++|...++++.+.. |+... ....+..+...|++++|..+|+++.+..+.+...++.+..++...|++++
T Consensus 141 ~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~e 218 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEA 218 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Confidence 66666666666666665543 22110 01122222333555666666655555555555555555555556666666
Q ss_pred HHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Q 048235 249 AMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDD-LELVYKRMLH 305 (455)
Q Consensus 249 a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~ 305 (455)
|...|+++++.. | +..++..++..+...|+.++ +.++++++.+
T Consensus 219 A~~~l~~al~~~--------------p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 219 AEGVLQEALDKD--------------SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 666665555532 3 45555555555555555543 3455555555
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=5.1e-17 Score=144.38 Aligned_cols=277 Identities=17% Similarity=0.201 Sum_probs=217.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChH
Q 048235 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTD 143 (455)
Q Consensus 64 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 143 (455)
++-....|+++.|+..++........+.......+.++|...|+++.|...++. ..+|+..++..+...+...|+.+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 345567899999999888765432222234556678999999999999986654 34567888999999999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048235 144 EAVSAVEDMERRGIVG-SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222 (455)
Q Consensus 144 ~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 222 (455)
+|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999887545 466677788999999999999999987 457889999999999999999999999999
Q ss_pred HhcCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 048235 223 KNFCSPNLVTC--NIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVY 300 (455)
Q Consensus 223 ~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 300 (455)
.+..+.+.... ...+..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|++++|...|
T Consensus 157 ~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-------------p~~~~~~~~la~~~~~~g~~~eA~~~l 223 (291)
T 3mkr_A 157 QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-------------SPTLLLLNGQAACHMAQGRWEAAEGVL 223 (291)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-------------CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-------------CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 87543333221 223344556699999999999999864 347889999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHH
Q 048235 301 KRMLHHGLHFNAKRHLRMILDASRAGKVEL-LEITWEHLARADRITPPALIKERFCNRLENKDYGSAIS 368 (455)
Q Consensus 301 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 368 (455)
+++.+... -+..++..++..+...|+.++ +.++++++.+.+|.+|. +..+ ....+.|+++..
T Consensus 224 ~~al~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~--~~d~---~~~~~~fd~~~~ 286 (291)
T 3mkr_A 224 QEALDKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF--IKEY---RAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH--HHHH---HHHHHHHHHHHH
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH--HHHH---HHHHHHHHHHHH
Confidence 99998432 256688888888999999876 67899999988877664 2222 224566776665
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=5.4e-15 Score=141.93 Aligned_cols=347 Identities=10% Similarity=-0.010 Sum_probs=276.9
Q ss_pred CCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCC
Q 048235 54 EPDIVVYNAVLNACVR----RKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA----CGKYNLVYEFFRKVQKSYIPN 125 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 125 (455)
..++.++..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|..+|++....+ +
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~ 110 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--L 110 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--C
Confidence 5678899999999988 899999999999998875 56778888888888 899999999999998764 6
Q ss_pred HHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHH
Q 048235 126 ALAYKVLVNTLWR----EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS----AGKCEEALMQMDKICKVANKPLVV 197 (455)
Q Consensus 126 ~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~ 197 (455)
...+..|...|.. .+++++|+..|++..+.| +...+..|...|.. .++.++|...|++..+.+ +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 7888889899988 889999999999998876 56677778888887 889999999999998875 678
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcccccchhhcc
Q 048235 198 SYTGLIQACLD----SGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLE----HGLFEEAMKLFQEMAEDSNHINREYDK 269 (455)
Q Consensus 198 ~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~ 269 (455)
.+..+...|.. .+++++|...|++..+. .+...+..+...|.. .+++++|..+|++..+.+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--------- 253 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--------- 253 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---------
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------
Confidence 88889999988 89999999999998763 567788888888886 889999999999998865
Q ss_pred CCCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHhh
Q 048235 270 KGLVIPDIYTFNTMLDACAA----EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRA-----GKVELLEITWEHLAR 340 (455)
Q Consensus 270 ~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~ 340 (455)
+...+..+...|.. .++.++|.++|++..+.| +...+..+...|... +++++|...+++..+
T Consensus 254 ------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 254 ------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp ------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 45666677777877 899999999999998865 445677777777776 899999999999987
Q ss_pred cCCCCChHhHHHHHHHHhhcc---chHHHHHHhhhcCCCCCccccHHHHHHHHhhhcc----cCCcchHHHHHHHhcccc
Q 048235 341 ADRITPPALIKERFCNRLENK---DYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQ----HFGQDTLIQLLHEASSSL 413 (455)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~ 413 (455)
.+. ++ ....+...+.+.| ++++|++++++...... ...|..+...+.. ....+++...+.+.+.
T Consensus 325 ~~~--~~-a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~-- 395 (490)
T 2xm6_A 325 QGD--AT-AQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGE----KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE-- 395 (490)
T ss_dssp TTC--HH-HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--
T ss_pred cCC--HH-HHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh--
Confidence 652 22 2233333333434 89999999998765433 2666666665444 3444467776666555
Q ss_pred ccccCCCchhHHHHHHh----HHhhhhccCCc
Q 048235 414 TTRNGSPYPVLQNLISS----CKDFLRTQSPA 441 (455)
Q Consensus 414 ~p~~~~~~~~l~~~~~~----~~~~~~a~~~~ 441 (455)
..++.++..|+.+|.. .++..+|....
T Consensus 396 -~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 426 (490)
T 2xm6_A 396 -QGLSAAQVQLGEIYYYGLGVERDYVQAWAWF 426 (490)
T ss_dssp -TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 3467889999999998 78887776653
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.3e-18 Score=158.31 Aligned_cols=309 Identities=12% Similarity=0.119 Sum_probs=125.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 048235 69 RRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSA 148 (455)
Q Consensus 69 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 148 (455)
+.|++++|.++++++. +..+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5566778888877772 3347778888888888888888877543 4666777788888888888888886
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 048235 149 VEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP 228 (455)
Q Consensus 149 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 228 (455)
++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 6655543 3446667778888888888888776663 356668888888888888888888888766
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048235 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308 (455)
Q Consensus 229 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 308 (455)
..|..++.++.+.|++++|++.++++ + ++.+|..++.+|...|+++.|......+. +
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA---~---------------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~ 205 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA---N---------------STRTWKEVCFACVDGKEFRLAQMCGLHIV---V 205 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH---T---------------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---T
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc---C---------------CchhHHHHHHHHHHcCcHHHHHHHHHHHH---h
Confidence 25777888888888888888887776 2 56778888888888888888855443311 2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHH--hhccchHHHHHHhhhcCCCCC---ccccH
Q 048235 309 HFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNR--LENKDYGSAISCLVSHPVSGS---PEFSR 383 (455)
Q Consensus 309 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~~~~~~~---~~~~~ 383 (455)
.|+ ....++..|.+.|++++|..+++..+..++.+.. ++..+.... .+.++..+.++.+.+-..-|. ..-..
T Consensus 206 ~ad--~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~-~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~ 282 (449)
T 1b89_A 206 HAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMG-MFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQA 282 (449)
T ss_dssp CHH--HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHH-HHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTT
T ss_pred CHh--hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 333 3445677778888888888888887776655433 233332222 266777777776665443221 00123
Q ss_pred HHHHHHHhhhcccCCcchHHHHHHHhccc-----------cccccCCCchhHHHHHH
Q 048235 384 NAWLKFFKENSQHFGQDTLIQLLHEASSS-----------LTTRNGSPYPVLQNLIS 429 (455)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~p~~~~~~~~l~~~~~ 429 (455)
..|..+.-.+...+..+.++..+-+.... ..|.|.+.|....+-|.
T Consensus 283 ~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 283 HLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 66777666666666777666666554431 14556666555555554
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=1.2e-18 Score=158.48 Aligned_cols=285 Identities=12% Similarity=0.156 Sum_probs=138.2
Q ss_pred HcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048235 104 ACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183 (455)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 183 (455)
+.|++++|.++++++. +..+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...
T Consensus 15 ~~~~ld~A~~fae~~~-----~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7888999999999993 3469999999999999999999999653 5777899999999999999999998
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhccccc
Q 048235 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHI 263 (455)
Q Consensus 184 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 263 (455)
++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+.
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~------ 149 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------ 149 (449)
T ss_dssp ---------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHHTT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh------
Confidence 8777664 3457889999999999999999998885 3888899999999999999999999999751
Q ss_pred chhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 048235 264 NREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADR 343 (455)
Q Consensus 264 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 343 (455)
.|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+.
T Consensus 150 ---------------n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---- 204 (449)
T 1b89_A 150 ---------------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---- 204 (449)
T ss_dssp ---------------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT----
T ss_pred ---------------hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH----
Confidence 4889999999999999999999988 267899999999999999999976555432
Q ss_pred CCChHhHHHHHHHHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcc--hHHHHHHHhcccccc-----c
Q 048235 344 ITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQD--TLIQLLHEASSSLTT-----R 416 (455)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~p-----~ 416 (455)
..|+. ...+...+.+.|.+++|+.+++......+.+ ...|.-+...+++..... |..+.+...+. +.| +
T Consensus 205 ~~ad~-l~~lv~~Yek~G~~eEai~lLe~aL~le~ah--~~~ftel~il~~ky~p~k~~ehl~~~~~~in-i~k~~~~~~ 280 (449)
T 1b89_A 205 VHADE-LEELINYYQDRGYFEELITMLEAALGLERAH--MGMFTELAILYSKFKPQKMREHLELFWSRVN-IPKVLRAAE 280 (449)
T ss_dssp TCHHH-HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC--HHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC-HHHHHHHHH
T ss_pred hCHhh-HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc-CcHHHHHHH
Confidence 33443 2344444558999999999999876444332 366766666556666555 77777776666 888 8
Q ss_pred cCCCchhHHHHHHhHHhhhhccCCcc
Q 048235 417 NGSPYPVLQNLISSCKDFLRTQSPAP 442 (455)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~ 442 (455)
+...|..+..+|.+.++|+.|..+|-
T Consensus 281 ~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 281 QAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp TTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 99999999999999999998877643
No 32
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=6.3e-16 Score=149.95 Aligned_cols=370 Identities=10% Similarity=0.016 Sum_probs=262.6
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 048235 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLV 133 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 133 (455)
+-|..+|..++. +.+.|++++|..+|+++.+.. +-+...|..++..+.+.|+++.|..+|+++.... |+...|..++
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-LHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-CCHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CChHHHHHHH
Confidence 558889999998 478999999999999999864 3377889999999999999999999999998876 4788888877
Q ss_pred HHH-HhcCChHHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCcHH
Q 048235 134 NTL-WREGKTDEAVS----AVEDMERR-GIVG-SAALYYDLARCLCS---------AGKCEEALMQMDKICKVANKPLVV 197 (455)
Q Consensus 134 ~~~-~~~g~~~~a~~----~~~~m~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~m~~~~~~~~~~ 197 (455)
... ...|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|++..+....+...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 45677777765 67666553 5443 45677777766554 688999999999998832111123
Q ss_pred HHHHHHHHH-------------HhcCCHHHHHHHHHHHHh---c-------CCCC--------HHHHHHHHHHHHhc---
Q 048235 198 SYTGLIQAC-------------LDSGNIQNAAYIFNQMKN---F-------CSPN--------LVTCNIMVKAYLEH--- 243 (455)
Q Consensus 198 ~~~~li~~~-------------~~~~~~~~a~~~~~~~~~---~-------~~~~--------~~~~~~li~~~~~~--- 243 (455)
.|....... ...+++..|..++..+.. . ++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 443322211 124567778777776321 1 2444 24566555433322
Q ss_pred -CCh----hHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHH
Q 048235 244 -GLF----EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA-------EKRWD-------DLELVYKRML 304 (455)
Q Consensus 244 -~~~----~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~ 304 (455)
++. .++..+|++++... +-+...|..+...+.+ .|+++ +|..+|++..
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-------------p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al 313 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-------------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI 313 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCcchhHHHHHHHHHHHHHHhC-------------CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH
Confidence 232 37888999999864 2378889888888876 68877 8999999988
Q ss_pred HcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCCCCccccH
Q 048235 305 HHGLHF-NAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEFSR 383 (455)
Q Consensus 305 ~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 383 (455)
+. +.| +...+..+...+.+.|++++|..+|+++++..+..+...+..+.....+.|++++|.++++.+...++.....
T Consensus 314 ~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~ 392 (530)
T 2ooe_A 314 ST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV 392 (530)
T ss_dssp TT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHH
T ss_pred HH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHH
Confidence 63 234 4678888888899999999999999999987655432233334444458899999999999887655442222
Q ss_pred HHHHHHHhhhcccCCcchHHHHHHHhccccccccCCCchhHHHHHHhHHhhhhccCCcc
Q 048235 384 NAWLKFFKENSQHFGQDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQSPAP 442 (455)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 442 (455)
..+..++. +.+.+..+++...+.+.+. .+|+++..+..++..+.+.|+.++|..+.+
T Consensus 393 ~~~~a~~~-~~~~~~~~~A~~~~e~al~-~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 393 YVTAALME-YYCSKDKSVAFKIFELGLK-KYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHH-HHHTCCHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHH-HHHcCChhHHHHHHHHHHH-HCCCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 22222222 1245566677777666665 899999999999999999999998887755
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=169.05 Aligned_cols=116 Identities=14% Similarity=0.244 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCC
Q 048235 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKN----FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKG 271 (455)
Q Consensus 196 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 271 (455)
..||++||++||+.|++++|.++|.+|.+ ++.||+.|||+||.+||+.|++++|.++|++|.+.|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G----------- 195 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG----------- 195 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----------
Confidence 44555555555555555555555555431 255555555555555555555555555555555555
Q ss_pred CCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048235 272 LVIPDIYTFNTMLDACAAEKR-WDDLELVYKRMLHHGLHFNAKRHLRMILDAS 323 (455)
Q Consensus 272 ~~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 323 (455)
+.||..||+++|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.
T Consensus 196 -~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 196 -LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp -CCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred -CCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 55555555555555555554 2455555555555555555555555554443
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.3e-15 Score=132.78 Aligned_cols=224 Identities=11% Similarity=0.012 Sum_probs=167.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-------HHHH
Q 048235 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPN-------ALAY 129 (455)
Q Consensus 57 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~ 129 (455)
...|..+...+...|++++|...|++..+.. .+...+..+..++...|+++.|...+++.....+.+ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 5677888888888888999998888888876 577888888888888888888888888876543322 5777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 048235 130 KVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS 209 (455)
Q Consensus 130 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 209 (455)
..+..++...|++++|...|++..+.. |+. ..+...|++++|...++.+..... .+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHh
Confidence 888888888888888888888887754 332 234456777788888877776542 2456677777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHH
Q 048235 210 GNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289 (455)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 289 (455)
|++++|...|++.....+.+..+|..+..+|...|++++|...|+++.+.. +.+...|..+...+..
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------------~~~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-------------PNFVRAYIRKATAQIA 219 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------TTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------------HHHHHHHHHHHHHHHH
Confidence 888888877777776666677777777777777777777777777777753 2246677777777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 048235 290 EKRWDDLELVYKRMLH 305 (455)
Q Consensus 290 ~~~~~~a~~~~~~m~~ 305 (455)
.|++++|...+++..+
T Consensus 220 ~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 220 VKEYASALETLDAART 235 (258)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHH
Confidence 7777777777777766
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=163.23 Aligned_cols=117 Identities=9% Similarity=0.111 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCHHHHHHH
Q 048235 161 AALYYDLARCLCSAGKCEEALMQMDKIC---KVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIM 236 (455)
Q Consensus 161 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l 236 (455)
..||++||.+||+.|++++|..+|.+|. ..|+.||+.|||+||.+||+.|++++|.++|++|.+. +.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4567777777777777777777776654 3466777777777777777777777777777777544 77777777777
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHH
Q 048235 237 VKAYLEHGLF-EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA 289 (455)
Q Consensus 237 i~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 289 (455)
|.++++.|+. ++|.++|++|.+.| +.||..+|++++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG------------~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG------------LKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT------------CCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC------------CCCChhhcccccChhhH
Confidence 7777777763 56677777777777 67777777777765555
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=3.5e-14 Score=143.99 Aligned_cols=357 Identities=12% Similarity=0.167 Sum_probs=236.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHH--------------------------
Q 048235 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNA-------------------------- 62 (455)
Q Consensus 9 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 62 (455)
--...+.+|...|.+.+|++++++....+.. ..-+...-+.
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~-------------fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~ 1053 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSV-------------FSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAP 1053 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCc-------------ccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHH
Confidence 3456778899999999999999999853210 0112222232
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 048235 63 -VLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGK 141 (455)
Q Consensus 63 -li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 141 (455)
+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.+++ .+..+|..+..++...|+
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCC
Confidence 3445556666666766666641 12222232322 566677776666644 356777788888888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048235 142 TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQ 221 (455)
Q Consensus 142 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 221 (455)
+++|++.|.+. -|...|..++.++.+.|++++|.+.+....+.. ++....+.++.+|++.++++....+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 88888877543 355566777888888888888888887766654 23333334777777777777533332
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048235 222 MKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYK 301 (455)
Q Consensus 222 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 301 (455)
. .++...|..+...|...|++++|..+|.... .|..+...|.+.|++++|.+.++
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~---------------------ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------------------NFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh---------------------HHHHHHHHHHHhCCHHHHHHHHH
Confidence 1 3566666677777788888888888777742 46777788888888888888777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCCCCccc
Q 048235 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPEF 381 (455)
Q Consensus 302 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 381 (455)
+.. +..+|..+-.+|...|+++.|......+. .+++. +..+...+-+.|.+++|+.+++....-.+.
T Consensus 1246 KA~------n~~aWkev~~acve~~Ef~LA~~cgl~Ii----v~~de-Leeli~yYe~~G~feEAI~LlE~aL~Lera-- 1312 (1630)
T 1xi4_A 1246 KAN------STRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADE-LEELINYYQDRGYFEELITMLEAALGLERA-- 1312 (1630)
T ss_pred HhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhhh----cCHHH-HHHHHHHHHHcCCHHHHHHHHHHHhccChh--
Confidence 652 34577777777878888888777655432 12322 334444455899999999999877643322
Q ss_pred cHHHHHHHHhhhcccCCcc--hHHHHHHHhcccccc-----ccCCCchhHHHHHHhHHhhhhccCC
Q 048235 382 SRNAWLKFFKENSQHFGQD--TLIQLLHEASSSLTT-----RNGSPYPVLQNLISSCKDFLRTQSP 440 (455)
Q Consensus 382 ~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~~~~~~a~~~ 440 (455)
....|.-+...+++....+ |.++.+...+. +.| ++...|..+..+|.+.|+|++|...
T Consensus 1313 H~gmftELaiLyaKy~peklmEhlk~f~~rin-i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1313 HMGMFTELAILYSKFKPQKMREHLELFWSRVN-IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 2356655555445555555 88888777666 666 7888899999999999999988854
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=1.5e-15 Score=128.91 Aligned_cols=201 Identities=14% Similarity=0.072 Sum_probs=169.5
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 048235 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLV 133 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 133 (455)
+++...+..+...+.+.|++++|...|++..+..+. +...+..+..++.+.|++++|...|++.....|.+..++..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 578889999999999999999999999999987544 7888999999999999999999999999998888999999999
Q ss_pred HHHHhc-----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 048235 134 NTLWRE-----------GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGL 202 (455)
Q Consensus 134 ~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 202 (455)
.++... |++++|+..+++..+.. +-+...+..+..++...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 999999 99999999999999875 3457788889999999999999999999999987 588899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048235 203 IQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258 (455)
Q Consensus 203 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 258 (455)
..+|...|++++|...|++..+..|.+...+..+...+...|++++|...|++...
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999999888888899999999999999999999999987654
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=5.3e-15 Score=128.91 Aligned_cols=227 Identities=12% Similarity=0.080 Sum_probs=197.7
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048235 7 TVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ 86 (455)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 86 (455)
..+|..+...+...|++++|++.|+++... . .+..+|..+...+...|++++|...|++..+.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~---------------~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 67 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL---------------H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQ 67 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh---------------h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 467888999999999999999999999862 2 77889999999999999999999999999875
Q ss_pred CCC--CC----HhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048235 87 GQK--PS----ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS 160 (455)
Q Consensus 87 ~~~--p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 160 (455)
... |+ ..++..+...+...|++++|...|+++....+ +. ..+...|++++|...++++.... +.+
T Consensus 68 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~ 138 (258)
T 3uq3_A 68 GREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR-TA-------DILTKLRNAEKELKKAEAEAYVN-PEK 138 (258)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CH-------HHHHHHHHHHHHHHHHHHHHHCC-HHH
T ss_pred CcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc-hh-------HHHHHHhHHHHHHHHHHHHHHcC-cch
Confidence 322 12 57888899999999999999999999987643 32 45677788999999999998864 334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 048235 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240 (455)
Q Consensus 161 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 240 (455)
...+..+...+...|++++|...+++..+.... +..++..+...+...|++++|...|+...+..+.+...|..+..++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 217 (258)
T 3uq3_A 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 217 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 667888999999999999999999999987644 6889999999999999999999999999887788899999999999
Q ss_pred HhcCChhHHHHHHHHHHhcc
Q 048235 241 LEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 241 ~~~~~~~~a~~~~~~m~~~~ 260 (455)
...|++++|...|++..+..
T Consensus 218 ~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 218 IAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhC
Confidence 99999999999999998753
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=2.2e-15 Score=127.88 Aligned_cols=200 Identities=15% Similarity=0.046 Sum_probs=167.6
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048235 4 YPDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQL 83 (455)
Q Consensus 4 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 83 (455)
+++...+..+...+.+.|++++|+..|++... ..+.+...|..+...+.+.|++++|...|++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 65 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALK----------------ENPQDPEALYWLARTQLKLGLVNPALENGKTL 65 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT----------------TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56778899999999999999999999999985 33667899999999999999999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHHHc-----------CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048235 84 KQQGQKPSATTYGLVMEVMLAC-----------GKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM 152 (455)
Q Consensus 84 ~~~~~~p~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 152 (455)
.+..+. +...+..+..++... |++++|...|++.....|.+..++..+..++...|++++|+..|++.
T Consensus 66 l~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 144 (217)
T 2pl2_A 66 VARTPR-YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQA 144 (217)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhCCC-cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 997644 678888899999999 99999999999999988889999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048235 153 ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMK 223 (455)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 223 (455)
.+.+ .+...+..+..+|...|++++|...+++..+..+. +...+..+...+...|++++|...|++..
T Consensus 145 l~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 145 LALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred Hhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9987 67888899999999999999999999999987643 68888999999999999999999998764
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.70 E-value=1.5e-14 Score=125.76 Aligned_cols=202 Identities=12% Similarity=0.010 Sum_probs=181.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 048235 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTL 136 (455)
Q Consensus 57 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 136 (455)
...|..+...+...|++++|...|+++.+.... +...+..+..++...|++++|.+.|+++....+.+..++..+...|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 678899999999999999999999999987533 6888999999999999999999999999988778899999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 048235 137 WREGKTDEAVSAVEDMERRGIVG-SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA 215 (455)
Q Consensus 137 ~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 215 (455)
...|++++|.++++++.+.+..| +...+..+...+...|++++|...+++..+.... +..++..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998733344 4567888999999999999999999999887643 688899999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 216 AYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
...++.+.+..+.+...+..+...+...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999988777888899999999999999999999999999864
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.70 E-value=1.5e-14 Score=127.34 Aligned_cols=238 Identities=12% Similarity=0.056 Sum_probs=138.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH
Q 048235 95 YGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG--SAALYYDLARCLC 172 (455)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~ 172 (455)
+......+...|+++.|...|+++....+.+..++..+..+|...|++++|+..+++..+....+ ....|..+..++.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 33344455556666666666666655554455556666666666666666666666665532111 1233555666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 048235 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKL 252 (455)
Q Consensus 173 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 252 (455)
..|++++|...+++..+.... +..++..+...|...|++++|...|++..+..+.+...|..+...+...+++++|.+.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666655432 4456666666666677777777766666555555566666666233333477777777
Q ss_pred HHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHc-CCCCC------HHHHHHHHHHH
Q 048235 253 FQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR---WDDLELVYKRMLHH-GLHFN------AKRHLRMILDA 322 (455)
Q Consensus 253 ~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~-~~~p~------~~~~~~ll~~~ 322 (455)
|+++.+.. +.+...+..+...+...|+ +++|...++++.+. .-.|+ ...+..+...|
T Consensus 165 ~~~a~~~~-------------p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (272)
T 3u4t_A 165 FVKVLELK-------------PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231 (272)
T ss_dssp HHHHHHHS-------------TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-------------ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 77776643 1235556666666666666 66666666666652 11222 13455566666
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCC
Q 048235 323 SRAGKVELLEITWEHLARADRITP 346 (455)
Q Consensus 323 ~~~g~~~~a~~~~~~~~~~~~~~~ 346 (455)
...|++++|...+++..+.++..+
T Consensus 232 ~~~~~~~~A~~~~~~al~~~p~~~ 255 (272)
T 3u4t_A 232 TINRDKVKADAAWKNILALDPTNK 255 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHcCCHHHHHHHHHHHHhcCccHH
Confidence 777777777777777776665443
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.69 E-value=3.1e-14 Score=121.20 Aligned_cols=205 Identities=10% Similarity=0.052 Sum_probs=182.1
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 048235 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLV 133 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 133 (455)
+.+..+|..+...+...|++++|...|+++.+.... +...+..+...+...|+++.|...++++....+.+..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 456788999999999999999999999999987543 6788899999999999999999999999988888899999999
Q ss_pred HHHHhc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 048235 134 NTLWRE-GKTDEAVSAVEDMERRGIVGS-AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211 (455)
Q Consensus 134 ~~~~~~-g~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 211 (455)
.++... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+.... +...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCC
Confidence 999999 999999999999988433333 577888999999999999999999999887543 68889999999999999
Q ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 212 IQNAAYIFNQMKNFCS-PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 212 ~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
+++|...++++.+..+ .+...+..+...+...|+.+.|..+++.+.+..
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9999999999987766 788889889999999999999999999998754
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.69 E-value=2.1e-14 Score=131.84 Aligned_cols=249 Identities=10% Similarity=0.063 Sum_probs=212.4
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 048235 7 TVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQ-WEGAFWVLQQLKQ 85 (455)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~ 85 (455)
..+|+.+...+.+.|++++|++.|+++... .+-+..+|+.+..++...|+ +++|+..|++..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l----------------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL----------------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE 160 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh----------------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 456888888999999999999999999853 25678899999999999997 9999999999999
Q ss_pred cCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 048235 86 QGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY 165 (455)
Q Consensus 86 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 165 (455)
.... +...|..+..++...|++++|+..|+++....+.+..+|..+..++.+.|++++|+..++++++.+ +-+...|+
T Consensus 161 l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~ 238 (382)
T 2h6f_A 161 EQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWN 238 (382)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHH
T ss_pred HCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHH
Confidence 8665 788999999999999999999999999999988999999999999999999999999999999986 34678888
Q ss_pred HHHHHHHh-cCCHHHH-----HHHHHHHHHcCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 048235 166 DLARCLCS-AGKCEEA-----LMQMDKICKVANKPLVVSYTGLIQACLDSG--NIQNAAYIFNQMKNFCSPNLVTCNIMV 237 (455)
Q Consensus 166 ~l~~~~~~-~g~~~~a-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~li 237 (455)
.+..++.. .|..++| +..+++....... +...|+.+...+...| ++++|.+.+.++ +..+.+...+..+.
T Consensus 239 ~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La 316 (382)
T 2h6f_A 239 QRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLV 316 (382)
T ss_dssp HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHH
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHH
Confidence 89999998 6665777 5888888887644 6788998999898888 689999999998 55777888999999
Q ss_pred HHHHhcC---------ChhHHHHHHHHH-HhcccccchhhccCCCCCC-cHHHHHHHHHHHHH
Q 048235 238 KAYLEHG---------LFEEAMKLFQEM-AEDSNHINREYDKKGLVIP-DIYTFNTMLDACAA 289 (455)
Q Consensus 238 ~~~~~~~---------~~~~a~~~~~~m-~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 289 (455)
.+|.+.| ..++|.++|+++ .+. .| ....|..+...+..
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--------------DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 317 DIYEDMLENQCDNKEDILNKALELCEILAKEK--------------DTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--------------CGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHHh--------------CchhHHHHHHHHHHHHH
Confidence 9998874 258999999999 664 46 45666666655543
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.69 E-value=4.7e-14 Score=122.58 Aligned_cols=200 Identities=12% Similarity=0.006 Sum_probs=134.8
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048235 92 ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171 (455)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 171 (455)
...+..+...+...|+++.|...|+++....+.+..++..+..+|...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45566666677777777777777777776666667777777777777777777777777776654 23456666677777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHH
Q 048235 172 CSAGKCEEALMQMDKICKVANKP-LVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAM 250 (455)
Q Consensus 172 ~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 250 (455)
...|++++|...++++.+.+..| +...+..+...+...|++++|...|+++.+..+.+...+..+...|...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777766622223 35556666666777777777777777666555556666666777777777777777
Q ss_pred HHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 251 KLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 251 ~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
..++++.+.. +.+...+..+...+...|+.++|.++++++.+
T Consensus 196 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGG-------------GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTS-------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-------------cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777766643 23455566666666667777777777766666
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.69 E-value=6.6e-15 Score=129.73 Aligned_cols=249 Identities=11% Similarity=-0.053 Sum_probs=161.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHH
Q 048235 69 RRKQWEGAFWVLQQLKQQGQK---PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEA 145 (455)
Q Consensus 69 ~~~~~~~a~~~~~~m~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 145 (455)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...|+++....+.+..+|..+..+|...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 347788888888888875321 14566777778888888888888888888877777788888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048235 146 VSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225 (455)
Q Consensus 146 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 225 (455)
...|++..+.. +.+...+..+..+|...|++++|...++++.+... +.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 88888887764 23456677788888888888888888888777543 2223333344445667777777777766655
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048235 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRML 304 (455)
Q Consensus 226 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 304 (455)
.+++...+. ++..+...++.++|...+++....... ..| +..++..+...|...|++++|...|+++.
T Consensus 174 ~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 174 SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTS----------LAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH----------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhccccc----------ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555444 555566666777777777776654300 000 13556666666666666777766666666
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 048235 305 HHGLHFNAKRHLRMILDASRAGKVELLEITW 335 (455)
Q Consensus 305 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 335 (455)
+. .|+. +.....++...|++++|.+.+
T Consensus 243 ~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 243 AN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred hC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 63 2321 112233344555555555444
No 46
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.68 E-value=1.1e-13 Score=140.43 Aligned_cols=346 Identities=12% Similarity=0.115 Sum_probs=253.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048235 12 SIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPS 91 (455)
Q Consensus 12 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 91 (455)
-+...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++.. +
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~--------------------~~~~A~~VLie---~i~nldrAiE~Aervn------~ 1104 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD--------------------VNTSAVQVLIE---HIGNLDRAYEFAERCN------E 1104 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC--------------------CHHHHHHHHHH---HHhhHHHHHHHHHhcC------C
Confidence 35667888999999999999874 23344455544 6778999999888652 5
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048235 92 ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171 (455)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 171 (455)
..+|..+..++.+.|++++|.+.|.+. .+...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 1177 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHH
Confidence 788889999999999999999999664 578889999999999999999999998877765 3332334588999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHH
Q 048235 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMK 251 (455)
Q Consensus 172 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 251 (455)
++.+++++...+. + .++...|..+...|...|++++|..+|... ..|..+..+|++.|++++|.+
T Consensus 1178 AKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1178 AKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred HhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHH
Confidence 9999888644442 2 345667778999999999999999999885 379999999999999999999
Q ss_pred HHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 048235 252 LFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELL 331 (455)
Q Consensus 252 ~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 331 (455)
.+++. .+..+|..+-.+|...|++..|...... +..++..+..++..|.+.|.+++|
T Consensus 1243 aarKA------------------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEA 1299 (1630)
T 1xi4_A 1243 GARKA------------------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEEL 1299 (1630)
T ss_pred HHHHh------------------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHH
Confidence 98876 2568888888899999988888776653 323455677888889999999999
Q ss_pred HHHHHHHhhcCCCCChHhHHHHHHHH--hhccchHHHHHHhhhcCCCCC---ccccHHHHHHHHhhhcccCCcchHHHHH
Q 048235 332 EITWEHLARADRITPPALIKERFCNR--LENKDYGSAISCLVSHPVSGS---PEFSRNAWLKFFKENSQHFGQDTLIQLL 406 (455)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 406 (455)
..+++..+..++.+.. ++.++...+ .+.++..++++++.+-..-|. ..-....|..+.-.|...+..+.|+..+
T Consensus 1300 I~LlE~aL~LeraH~g-mftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1300 ITMLEAALGLERAHMG-MFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHHHHhccChhHhH-HHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 9999888877655443 222222222 377888888888876544331 1123477888777666777777776444
Q ss_pred HHhccc-----------cccccCCCchhHHHHHHhHH
Q 048235 407 HEASSS-----------LTTRNGSPYPVLQNLISSCK 432 (455)
Q Consensus 407 ~~~~~~-----------~~p~~~~~~~~l~~~~~~~~ 432 (455)
-+.... ..+.|++.|..-++-|...+
T Consensus 1379 ~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1379 MNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 433221 14556666666666665544
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.68 E-value=6.8e-15 Score=127.05 Aligned_cols=213 Identities=12% Similarity=0.110 Sum_probs=133.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048235 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLK 84 (455)
Q Consensus 5 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 84 (455)
.+..+|..+...+...|++++|...|+++.. ..+.+..++..+...+...|++++|...|+++.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~----------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 84 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIE----------------ENKEDAIPYINFANLLSSVNELERALAFYDKAL 84 (243)
T ss_dssp ---------------------CCTTHHHHHT----------------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH----------------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445566667777777777777777777764 224456777777777777777777777777777
Q ss_pred HcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 048235 85 QQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALY 164 (455)
Q Consensus 85 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 164 (455)
+.... +..++..+...+...|+++.|.+.++++....+.+..++..+...+...|++++|...++++.+.. +.+...+
T Consensus 85 ~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 162 (243)
T 2q7f_A 85 ELDSS-AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEAR 162 (243)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HcCCc-chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHH
Confidence 65432 566677777777777777777777777776666667777777777777777777777777776653 3345666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 048235 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIM 236 (455)
Q Consensus 165 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 236 (455)
..+...+...|++++|...++++.+... .+..++..+..+|...|++++|...++++.+..+.+...+..+
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 163 FQFGMCLANEGMLDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 6677777777777777777777766543 2566677777777777777777777777766555555555444
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=3e-14 Score=125.37 Aligned_cols=240 Identities=12% Similarity=0.069 Sum_probs=197.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC---CCHHHHHHHH
Q 048235 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI---PNALAYKVLV 133 (455)
Q Consensus 57 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li 133 (455)
...+......+...|++++|+..|++..+.... +...+..+..++...|+++.|...++++..... ....+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 445666778899999999999999999987543 566888899999999999999999999987321 1234589999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH
Q 048235 134 NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQ 213 (455)
Q Consensus 134 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 213 (455)
.++...|++++|+..|++..+.. +.+..++..+..+|...|++++|...+++..+... .+..++..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875 33567888999999999999999999999888743 36777777773444456999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcccccchhhccCCCCCCc------HHHHHHHH
Q 048235 214 NAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGL---FEEAMKLFQEMAEDSNHINREYDKKGLVIPD------IYTFNTML 284 (455)
Q Consensus 214 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~------~~~~~~li 284 (455)
+|...|+++.+..+.+...+..+..++...|+ +++|...++++.+... ..|+ ..+|..+.
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----------~~~~~~~~~~~~~~~~l~ 228 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA-----------PGGAKYKDELIEANEYIA 228 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG-----------GGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh-----------cccccchHHHHHHHHHHH
Confidence 99999999988777788899999999999888 8889999999887531 1133 25788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 048235 285 DACAAEKRWDDLELVYKRMLHHGLHFNA 312 (455)
Q Consensus 285 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 312 (455)
..|...|++++|.+.|+++.+. .|+.
T Consensus 229 ~~~~~~~~~~~A~~~~~~al~~--~p~~ 254 (272)
T 3u4t_A 229 YYYTINRDKVKADAAWKNILAL--DPTN 254 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CccH
Confidence 9999999999999999999984 3553
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.68 E-value=4.1e-14 Score=129.95 Aligned_cols=241 Identities=10% Similarity=0.042 Sum_probs=207.8
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCC-hhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048235 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK-YNLVYEFFRKVQKSYIPNALAYKVLVN 134 (455)
Q Consensus 56 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~li~ 134 (455)
+..+|+.+...+...|++++|+..|++..+.... +...|..+..++...|+ +++|+..|+++....+.+..+|+.+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 3568888999999999999999999999997654 78888999999999997 999999999999998889999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-cCCHH
Q 048235 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD-SGNIQ 213 (455)
Q Consensus 135 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~ 213 (455)
++...|++++|+..|+++++.+ +-+...|..+..++...|++++|+..++++.+..+. +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999986 446788899999999999999999999999998755 78899999999999 66657
Q ss_pred HH-----HHHHHHHHhcCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHH
Q 048235 214 NA-----AYIFNQMKNFCSPNLVTCNIMVKAYLEHG--LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286 (455)
Q Consensus 214 ~a-----~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 286 (455)
+| +..|++.....+.+...|+.+...+...| ++++|++.+.++ +.. ..+...+..+...
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-------------p~~~~al~~La~~ 318 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-------------HSSPYLIAFLVDI 318 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-------------CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-------------CCCHHHHHHHHHH
Confidence 77 58888888777888999999999999988 689999999888 432 3467888899999
Q ss_pred HHHcC---------CHHHHHHHHHHH-HHcCCCCCHHHH
Q 048235 287 CAAEK---------RWDDLELVYKRM-LHHGLHFNAKRH 315 (455)
Q Consensus 287 ~~~~~---------~~~~a~~~~~~m-~~~~~~p~~~~~ 315 (455)
|.+.| ..++|.++++++ .+ +.|...-|
T Consensus 319 ~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~ 355 (382)
T 2h6f_A 319 YEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEY 355 (382)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHH
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHH
Confidence 98874 358999999998 66 44654433
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.67 E-value=1e-13 Score=117.92 Aligned_cols=201 Identities=11% Similarity=0.018 Sum_probs=101.7
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048235 92 ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171 (455)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 171 (455)
...+..+...+...|+++.|.+.|+++....+.+..++..+..++...|++++|...++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34445555555556666666666665555544455555555555555566666655555555543 22344455555555
Q ss_pred Hhc-CCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHH
Q 048235 172 CSA-GKCEEALMQMDKICKVANKP-LVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEA 249 (455)
Q Consensus 172 ~~~-g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 249 (455)
... |++++|...++++.+.+..| +...+..+...+...|++++|...|+++.+..+.+...+..+...+...|++++|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence 555 55555555555555421111 2344444555555555555555555555444444444555555555555555555
Q ss_pred HHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 250 MKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 250 ~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
...++++.+.. ...+...+..+...+...|+.+.+..+++.+.+
T Consensus 167 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 167 DYYFKKYQSRV------------EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHH------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC------------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 55555554432 102334444444444455555555555555443
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.67 E-value=1.3e-14 Score=125.23 Aligned_cols=204 Identities=13% Similarity=0.088 Sum_probs=165.3
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 048235 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLV 133 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 133 (455)
.....+|..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...|+++....+.+..++..+.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 98 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 456678888899999999999999999999986433 6888889999999999999999999999988778899999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH
Q 048235 134 NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQ 213 (455)
Q Consensus 134 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 213 (455)
..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998875 44677888899999999999999999999988754 36788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 214 NAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 214 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
+|...|+++.+..+.+..++..+..+|...|++++|...++++.+..
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999988777889999999999999999999999999999864
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=6.4e-13 Score=116.97 Aligned_cols=224 Identities=10% Similarity=-0.004 Sum_probs=199.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHH
Q 048235 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVR----RKQWEGAFWVLQ 81 (455)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~ 81 (455)
+..++..+...+...|++++|++.|++... +.+..++..+...|.. .+++++|...|+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~------------------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 66 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD------------------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYA 66 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHH
Confidence 567788899999999999999999999985 4567889999999999 999999999999
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHH
Q 048235 82 QLKQQGQKPSATTYGLVMEVMLA----CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWR----EGKTDEAVSAVEDME 153 (455)
Q Consensus 82 ~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~ 153 (455)
+..+.+ +...+..+...|.. .+++++|...|++....+ +..++..+...|.. .+++++|+..|++..
T Consensus 67 ~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 67 KACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 999876 77888888899999 999999999999998763 78899999999999 999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhc
Q 048235 154 RRGIVGSAALYYDLARCLCS----AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD----SGNIQNAAYIFNQMKNF 225 (455)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~ 225 (455)
+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.
T Consensus 142 ~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 142 DLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred hcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 876 56677788888888 999999999999998875 56778889999999 99999999999998764
Q ss_pred CCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcc
Q 048235 226 CSPNLVTCNIMVKAYLE----HGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 226 ~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~ 260 (455)
.+...+..+...|.. .+++++|.+.|++..+.+
T Consensus 216 --~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 216 --ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp --TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred --CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 337788888999998 999999999999999977
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=1.4e-12 Score=114.86 Aligned_cols=127 Identities=11% Similarity=0.030 Sum_probs=61.3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCHHHHHH
Q 048235 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLA----CGKYNLVYEFFRKVQKSYIPNALAYKV 131 (455)
Q Consensus 56 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 131 (455)
+..++..+...+...|++++|...|++..+.+ +...+..+...+.. .+++++|...|++....+ +..++..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHH
Confidence 44455555555555555555555555555421 33344444444445 555555555555544432 4444444
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHc
Q 048235 132 LVNTLWR----EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCS----AGKCEEALMQMDKICKV 190 (455)
Q Consensus 132 li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~ 190 (455)
+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL 143 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence 4444544 455555555555444443 33344444444444 44444444444444443
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=1e-13 Score=122.08 Aligned_cols=247 Identities=11% Similarity=-0.100 Sum_probs=153.7
Q ss_pred cCCHHHHHHHHHHHHHcCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHH
Q 048235 174 AGKCEEALMQMDKICKVANK---PLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAM 250 (455)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 250 (455)
.|++++|+..++++.+.... .+..++..+...+...|++++|...|+++.+..+.+..+|..+...|...|++++|.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 45666677766666654321 134556666777777777777777777766655666777777777777777777777
Q ss_pred HHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 048235 251 KLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVEL 330 (455)
Q Consensus 251 ~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 330 (455)
..|+++.+.. +.+...+..+...|...|++++|...|+++.+. .|+.......+..+...|++++
T Consensus 98 ~~~~~al~~~-------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~ 162 (275)
T 1xnf_A 98 EAFDSVLELD-------------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQ 162 (275)
T ss_dssp HHHHHHHHHC-------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHhcC-------------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHH
Confidence 7777777643 124566777777777777777777777777763 2333333333444456677777
Q ss_pred HHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCCCCcc--ccHHHHHHHHhhhcccCCcchHHHHHHH
Q 048235 331 LEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVSGSPE--FSRNAWLKFFKENSQHFGQDTLIQLLHE 408 (455)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 408 (455)
|...++......+..+. ........+..++.++|+..++......+.. .....|..+...+...+..+++...+.+
T Consensus 163 A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 240 (275)
T 1xnf_A 163 AKEVLKQHFEKSDKEQW--GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240 (275)
T ss_dssp HHHHHHHHHHHSCCCST--HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchH--HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777766665544332 2234444456666777777777654322110 1136666777766677777777777766
Q ss_pred hccccccccCCCchhHHHHHHhHHhhhhccCCc
Q 048235 409 ASSSLTTRNGSPYPVLQNLISSCKDFLRTQSPA 441 (455)
Q Consensus 409 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 441 (455)
.+. .+|++ +...+.++...|++.+|....
T Consensus 241 al~-~~p~~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 241 AVA-NNVHN---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHT-TCCTT---CHHHHHHHHHHHHHHHC----
T ss_pred HHh-CCchh---HHHHHHHHHHHHHHHhhHHHH
Confidence 665 76766 445577888889988887653
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.63 E-value=3.2e-14 Score=133.21 Aligned_cols=279 Identities=15% Similarity=0.079 Sum_probs=213.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHHcCChhHHHHHHHHHHhc------CCCCH
Q 048235 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSA----TTYGLVMEVMLACGKYNLVYEFFRKVQKS------YIPNA 126 (455)
Q Consensus 57 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~ 126 (455)
...+..+...+...|++++|...|+++.+.+.. +. ..+..+...+...|+++.|...+++.... .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 445566777889999999999999999987433 33 46788888999999999999999987653 12355
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 048235 127 LAYKVLVNTLWREGKTDEAVSAVEDMERR----G-IVGSAALYYDLARCLCSAGK-----------------CEEALMQM 184 (455)
Q Consensus 127 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~ 184 (455)
.++..+...|...|++++|...+++..+. + ......++..+...|...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 67888999999999999999999987764 1 12224577788999999999 99999998
Q ss_pred HHHHHc----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHhcCChhHHHHHH
Q 048235 185 DKICKV----ANKP-LVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC--SPN----LVTCNIMVKAYLEHGLFEEAMKLF 253 (455)
Q Consensus 185 ~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~li~~~~~~~~~~~a~~~~ 253 (455)
++..+. +..+ ...++..+...|...|++++|...+++..+.. .++ ..++..+...|...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 886542 2111 24578889999999999999999999886531 122 237888999999999999999999
Q ss_pred HHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCh
Q 048235 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH----GLHF-NAKRHLRMILDASRAGKV 328 (455)
Q Consensus 254 ~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~ 328 (455)
++....... .........++..+...|...|++++|...+++..+. +..+ ...++..+...|...|++
T Consensus 287 ~~al~~~~~-------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 359 (411)
T 4a1s_A 287 KRTLALAVE-------LGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGH 359 (411)
T ss_dssp HHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccH
Confidence 998775310 0000012567888889999999999999999998762 1111 134677788888999999
Q ss_pred HHHHHHHHHHhhcCC
Q 048235 329 ELLEITWEHLARADR 343 (455)
Q Consensus 329 ~~a~~~~~~~~~~~~ 343 (455)
++|...+++..+...
T Consensus 360 ~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 360 ERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999876653
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.62 E-value=4.1e-14 Score=132.04 Aligned_cols=277 Identities=14% Similarity=0.100 Sum_probs=157.8
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHH
Q 048235 5 PDTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPD----IVVYNAVLNACVRRKQWEGAFWVL 80 (455)
Q Consensus 5 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~ 80 (455)
+....+......+...|++++|...|+++... .+.+ ..+|..+...+...|++++|...|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~----------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 70 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQV----------------GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYH 70 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhc----------------CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 34455566666777777777777777777642 1222 346667777777777777777777
Q ss_pred HHHHHc----CCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHhcCC--------
Q 048235 81 QQLKQQ----GQKP-SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI--PN----ALAYKVLVNTLWREGK-------- 141 (455)
Q Consensus 81 ~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~li~~~~~~g~-------- 141 (455)
++.... +-.| ...++..+...+...|+++.|...+++.....+ .+ ..++..+...|...|+
T Consensus 71 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 150 (406)
T 3sf4_A 71 HHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQ 150 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-----
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccc
Confidence 766442 1111 244556666667777777777777776644321 12 3466666677777777
Q ss_pred ------------hHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Cc----HHHH
Q 048235 142 ------------TDEAVSAVEDMERR----GIVG-SAALYYDLARCLCSAGKCEEALMQMDKICKVANK-PL----VVSY 199 (455)
Q Consensus 142 ------------~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~ 199 (455)
+++|...+++..+. +..+ ...++..+...|...|++++|...+++..+.... ++ ..++
T Consensus 151 ~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 230 (406)
T 3sf4_A 151 DVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY 230 (406)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 77777666665432 1111 1234555666666667777777666665432110 11 2355
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCC
Q 048235 200 TGLIQACLDSGNIQNAAYIFNQMKNFCS--PN----LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV 273 (455)
Q Consensus 200 ~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 273 (455)
..+...|...|++++|...+++.....+ ++ ..++..+...|...|++++|...+++..+.... .+.
T Consensus 231 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--------~~~ 302 (406)
T 3sf4_A 231 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE--------LND 302 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------TTC
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh--------cCC
Confidence 6666666666666666666666543211 11 345556666666666666666666666543200 000
Q ss_pred CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 274 IP-DIYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 274 ~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
.+ ...++..+...|...|++++|...+++..+
T Consensus 303 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 303 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 01 134555556666666666666666666554
No 57
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.62 E-value=6.2e-14 Score=127.01 Aligned_cols=278 Identities=13% Similarity=0.057 Sum_probs=208.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HhhHHHHHHHHHHcCChhHHHHHHHHHHhc----CC--CCH
Q 048235 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPS----ATTYGLVMEVMLACGKYNLVYEFFRKVQKS----YI--PNA 126 (455)
Q Consensus 57 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~~ 126 (455)
...+......+...|++++|...|+++.+.... + ...+..+...+...|+++.|.+.+++.... +. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 445566677889999999999999999987433 3 367778888999999999999999887543 11 235
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 048235 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGI-VGS----AALYYDLARCLCSAGK--------------------CEEAL 181 (455)
Q Consensus 127 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a~ 181 (455)
.++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 6788889999999999999999998765411 112 3467788889999999 99999
Q ss_pred HHHHHHHHc----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHhcCChhHHH
Q 048235 182 MQMDKICKV----ANKP-LVVSYTGLIQACLDSGNIQNAAYIFNQMKNF--CSPN----LVTCNIMVKAYLEHGLFEEAM 250 (455)
Q Consensus 182 ~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~li~~~~~~~~~~~a~ 250 (455)
..+++.... +..+ ...++..+...+...|++++|...+++..+. ..++ ..++..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 988876542 2111 2457788889999999999999999987543 1122 337888889999999999999
Q ss_pred HHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHh
Q 048235 251 KLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHH----GLHFN-AKRHLRMILDASR 324 (455)
Q Consensus 251 ~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~ 324 (455)
..+++..+.... .+..+ ...++..+...|...|++++|...++++.+. +-.+. ..++..+...+.+
T Consensus 244 ~~~~~al~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 315 (338)
T 3ro2_A 244 EYYKKTLLLARQ--------LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 315 (338)
T ss_dssp HHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 999998764300 00011 1567788888999999999999999988762 11111 3466777888899
Q ss_pred cCChHHHHHHHHHHhhcCC
Q 048235 325 AGKVELLEITWEHLARADR 343 (455)
Q Consensus 325 ~g~~~~a~~~~~~~~~~~~ 343 (455)
.|++++|...+++..+...
T Consensus 316 ~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 316 LGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HTCHHHHHHHHHHHHHC--
T ss_pred cCChHHHHHHHHHHHHHHH
Confidence 9999999999999876553
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.61 E-value=9.8e-14 Score=129.49 Aligned_cols=280 Identities=13% Similarity=0.056 Sum_probs=215.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HhhHHHHHHHHHHcCChhHHHHHHHHHHhc----CC--
Q 048235 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPS----ATTYGLVMEVMLACGKYNLVYEFFRKVQKS----YI-- 123 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-- 123 (455)
......+......+...|++++|...|++..+.+.. + ..++..+...+...|+++.|...+++.... ..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 556777888889999999999999999999987433 3 357788888999999999999999987543 11
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HH
Q 048235 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI-VGS----AALYYDLARCLCSAGK--------------------CE 178 (455)
Q Consensus 124 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~ 178 (455)
....++..+...|...|++++|...+++..+... .++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2356788889999999999999999998876411 012 4477888999999999 99
Q ss_pred HHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHhcCChh
Q 048235 179 EALMQMDKICKV----ANKP-LVVSYTGLIQACLDSGNIQNAAYIFNQMKNF--CSPN----LVTCNIMVKAYLEHGLFE 247 (455)
Q Consensus 179 ~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~li~~~~~~~~~~ 247 (455)
+|...+.+.... +..+ ...++..+...|...|++++|...+++..+. ..++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998876543 2111 2457888899999999999999999988653 1122 337888899999999999
Q ss_pred HHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHH
Q 048235 248 EAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHH----GLHFN-AKRHLRMILD 321 (455)
Q Consensus 248 ~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~ 321 (455)
+|...+++....... .+..+ ...++..+...|...|++++|...+++..+. +-.+. ..++..+...
T Consensus 245 ~A~~~~~~al~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 316 (406)
T 3sf4_A 245 TASEYYKKTLLLARQ--------LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNA 316 (406)
T ss_dssp HHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--------CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999998764300 00111 1567888889999999999999999998762 11111 4467777888
Q ss_pred HHhcCChHHHHHHHHHHhhcC
Q 048235 322 ASRAGKVELLEITWEHLARAD 342 (455)
Q Consensus 322 ~~~~g~~~~a~~~~~~~~~~~ 342 (455)
|...|++++|...+++..+..
T Consensus 317 ~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 317 YTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp HHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHH
Confidence 899999999999999876543
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=2.7e-14 Score=133.79 Aligned_cols=275 Identities=13% Similarity=0.073 Sum_probs=212.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048235 8 VAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDI----VVYNAVLNACVRRKQWEGAFWVLQQL 83 (455)
Q Consensus 8 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m 83 (455)
..+..+...+...|++++|+..|+++... .+.+. .+|..+...|...|++++|...|++.
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~----------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQA----------------GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD 112 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHh----------------cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34556677889999999999999999853 12233 57889999999999999999999988
Q ss_pred HHc----CC-CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhcCC-----------
Q 048235 84 KQQ----GQ-KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY------IPNALAYKVLVNTLWREGK----------- 141 (455)
Q Consensus 84 ~~~----~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~li~~~~~~g~----------- 141 (455)
.+. +- .....++..+...|...|+++.|...+++..... +....++..+...|...|+
T Consensus 113 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 192 (411)
T 4a1s_A 113 LTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFG 192 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhh
Confidence 764 11 2245677888889999999999999999876541 1345678889999999999
Q ss_pred ------hHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Cc----HHHHHHHHHH
Q 048235 142 ------TDEAVSAVEDMERR----GIVG-SAALYYDLARCLCSAGKCEEALMQMDKICKVANK-PL----VVSYTGLIQA 205 (455)
Q Consensus 142 ------~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~ 205 (455)
+++|+..+++..+. +..+ ...++..+...|...|++++|...+++..+.... ++ ..++..+...
T Consensus 193 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 272 (411)
T 4a1s_A 193 DDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNS 272 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999887653 2111 2357778899999999999999999987654211 11 3478889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC--C----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHH
Q 048235 206 CLDSGNIQNAAYIFNQMKNFCS--P----NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIY 278 (455)
Q Consensus 206 ~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~ 278 (455)
|...|++++|...+++.....+ . ...++..+...|...|++++|...+++....... .+..+ ...
T Consensus 273 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~~~ 344 (411)
T 4a1s_A 273 HIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE--------LGDRIGEAR 344 (411)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------HTCHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------CCChHHHHH
Confidence 9999999999999998865311 1 2567888999999999999999999998775300 00011 245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048235 279 TFNTMLDACAAEKRWDDLELVYKRMLHH 306 (455)
Q Consensus 279 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 306 (455)
++..+...|...|++++|...+++..+.
T Consensus 345 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 7888889999999999999999999883
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.59 E-value=1e-13 Score=125.52 Aligned_cols=275 Identities=14% Similarity=0.106 Sum_probs=210.3
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHH
Q 048235 7 TVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPD----IVVYNAVLNACVRRKQWEGAFWVLQQ 82 (455)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~ 82 (455)
...+......+...|++++|+..|+++... .+.+ ...+..+...+...|++++|...+++
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~----------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 68 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQV----------------GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh----------------CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344556677788999999999999999852 1223 46788999999999999999999998
Q ss_pred HHHc----CCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHhcCC----------
Q 048235 83 LKQQ----GQKP-SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI--PN----ALAYKVLVNTLWREGK---------- 141 (455)
Q Consensus 83 m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~li~~~~~~g~---------- 141 (455)
..+. +..| ...++..+...+...|+++.|...+++.....+ .+ ..++..+...+...|+
T Consensus 69 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (338)
T 3ro2_A 69 DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDT 148 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC--
T ss_pred HHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhh
Confidence 7653 2122 356777888899999999999999998765322 22 3478888999999999
Q ss_pred ----------hHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----C-CcHHHHHH
Q 048235 142 ----------TDEAVSAVEDMERR----GIVG-SAALYYDLARCLCSAGKCEEALMQMDKICKVAN----K-PLVVSYTG 201 (455)
Q Consensus 142 ----------~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~----~-~~~~~~~~ 201 (455)
+++|...+++.... +..+ ...++..+...+...|++++|...+++..+... . ....++..
T Consensus 149 ~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (338)
T 3ro2_A 149 GEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 228 (338)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 99999999887543 2111 235677788999999999999999998765321 1 11347888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC
Q 048235 202 LIQACLDSGNIQNAAYIFNQMKNFC--SPN----LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275 (455)
Q Consensus 202 li~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p 275 (455)
+...+...|++++|...+++..... ..+ ..++..+...|...|++++|...+++..+.... .+..+
T Consensus 229 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--------~~~~~ 300 (338)
T 3ro2_A 229 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE--------LKDRI 300 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------HTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh--------cCCcH
Confidence 9999999999999999999886431 122 567788899999999999999999998764300 00011
Q ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 276 -DIYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 276 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
...++..+...|...|++++|...+++..+
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 301 GEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 245778888999999999999999999987
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.59 E-value=4.4e-12 Score=113.73 Aligned_cols=224 Identities=13% Similarity=0.046 Sum_probs=144.5
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048235 109 NLVYEFFRKVQKSYIPNALAYKVLVNTLWR-------EGKT-------DEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174 (455)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 174 (455)
+.|..+|++.....+.+...|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..+...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 456666666666555666666666665542 3664 67777777766631123445666677777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hcCChhHHHHH
Q 048235 175 GKCEEALMQMDKICKVANKPLVV-SYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL-EHGLFEEAMKL 252 (455)
Q Consensus 175 g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~ 252 (455)
|++++|..+|++..+..+. +.. +|..++..+.+.|++++|..+|++..+..+.+...|........ ..|++++|..+
T Consensus 113 ~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777664322 222 67777777777777777777777776654555555544333322 25788888888
Q ss_pred HHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCChH
Q 048235 253 FQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG-LHFN--AKRHLRMILDASRAGKVE 329 (455)
Q Consensus 253 ~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~g~~~ 329 (455)
|++.++.. +-+...|..++..+.+.|++++|..+|++..... +.|+ ...|..++..+.+.|+.+
T Consensus 192 ~~~al~~~-------------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~ 258 (308)
T 2ond_A 192 FELGLKKY-------------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 258 (308)
T ss_dssp HHHHHHHH-------------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHhC-------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 88877754 1256777777777777788888888888877742 3442 446666666667778888
Q ss_pred HHHHHHHHHhhcCCCCC
Q 048235 330 LLEITWEHLARADRITP 346 (455)
Q Consensus 330 ~a~~~~~~~~~~~~~~~ 346 (455)
.|..+++++.+..+..+
T Consensus 259 ~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 259 SILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHccccc
Confidence 88888777777665433
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=5.3e-12 Score=113.18 Aligned_cols=235 Identities=10% Similarity=0.003 Sum_probs=189.6
Q ss_pred HhHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHhhHHHHHHHHH-------HcCCh-------hHHHHH
Q 048235 57 IVVYNAVLNACVRR----KQW----EGAFWVLQQLKQQGQKPSATTYGLVMEVML-------ACGKY-------NLVYEF 114 (455)
Q Consensus 57 ~~~~~~li~~~~~~----~~~----~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~ 114 (455)
...|...+..-.+. ++. ++|..+|++....... +...|..+...+. +.|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 44566666554433 233 6888999999986433 7778888777765 35886 899999
Q ss_pred HHHHHhc-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048235 115 FRKVQKS-YIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS-AA-LYYDLARCLCSAGKCEEALMQMDKICKVA 191 (455)
Q Consensus 115 ~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 191 (455)
|++.... .+.+...|..++..+.+.|++++|..+|++..+.. |+ .. .|..++..+.+.|++++|..+|++..+..
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 9999984 66678899999999999999999999999999854 43 33 78889999999999999999999999875
Q ss_pred CCCcHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccC
Q 048235 192 NKPLVVSYTGLIQACL-DSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270 (455)
Q Consensus 192 ~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 270 (455)
. ++...|........ ..|+++.|..+|+...+..+.+...|..++..+...|++++|..+|++......
T Consensus 165 p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~--------- 234 (308)
T 2ond_A 165 R-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS--------- 234 (308)
T ss_dssp T-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS---------
T ss_pred C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC---------
Confidence 4 34555554444332 369999999999999877777899999999999999999999999999998520
Q ss_pred CCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048235 271 GLVIP--DIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306 (455)
Q Consensus 271 ~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 306 (455)
..| ....|..++..+.+.|+.+.|..+++++.+.
T Consensus 235 --l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 235 --LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp --SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 245 4678999999999999999999999999983
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.56 E-value=2.2e-12 Score=106.13 Aligned_cols=166 Identities=13% Similarity=0.110 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 048235 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204 (455)
Q Consensus 125 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 204 (455)
+..+|..+..+|.+.|++++|+..|++..+.+ +-+...+..+..+|...|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 44555556666666666666666666655543 223445555555566666666666666555554432 3445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHH
Q 048235 205 ACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTML 284 (455)
Q Consensus 205 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li 284 (455)
.+...++++.|...+.+.....+.+...+..+..+|...|++++|++.|++..+.. +.+..+|..+.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-------------p~~~~~~~~lg 148 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-------------PGFIRAYQSIG 148 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------TTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-------------chhhhHHHHHH
Confidence 55566666666666666555555555566666666666666666666666665533 12455555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 048235 285 DACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 285 ~~~~~~~~~~~a~~~~~~m~~ 305 (455)
.+|.+.|++++|.+.|++..+
T Consensus 149 ~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 149 LAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHh
Confidence 666666666666666666555
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=2.6e-12 Score=105.71 Aligned_cols=167 Identities=18% Similarity=0.177 Sum_probs=110.2
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048235 91 SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170 (455)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 170 (455)
+..+|..+...|.+.|++++|++.|++..+..|.+..++..+..+|.+.|++++|...+....... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 445566666666666666666666666666555566666666666666666666666666665553 2234455556666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHH
Q 048235 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAM 250 (455)
Q Consensus 171 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 250 (455)
+...++++.+...+.+....... +...+..+...|.+.|++++|++.|++..+..+.+..+|..+..+|...|++++|.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 66667777777666666665432 56666667777777777777777777776666666777777777777777777777
Q ss_pred HHHHHHHhc
Q 048235 251 KLFQEMAED 259 (455)
Q Consensus 251 ~~~~~m~~~ 259 (455)
+.|++.++.
T Consensus 162 ~~~~~al~~ 170 (184)
T 3vtx_A 162 KYFKKALEK 170 (184)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 777777763
No 65
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.55 E-value=4e-13 Score=127.11 Aligned_cols=300 Identities=12% Similarity=0.013 Sum_probs=127.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcCCccc-------------cc---cccccccCCCCCCCHhHHHHHHHHHHhcC-----
Q 048235 13 IAVTLGQAGHIKELFDVIDSMRSLPKKK-------------FK---TGTLERWDPRLEPDIVVYNAVLNACVRRK----- 71 (455)
Q Consensus 13 li~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~---~~~~~~~~~~~~~~~~~~~~li~~~~~~~----- 71 (455)
+...+.+.|++++|+++|++....+... .. ..+...|......++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 5677788999999999999987521100 00 11222222222223333333433333322
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhH---HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 048235 72 QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNL---VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSA 148 (455)
Q Consensus 72 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 148 (455)
++++|...|++..+.|.. ..+..|...|...+..+. +.+.+...... .+...+..|...|...+.++.+...
T Consensus 89 ~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA--GYPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--TCTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred CHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcccCHHH
Confidence 344444444444443321 133333333333332222 22222222211 1233344444444444433333332
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc----CCHHHHHHHHHH
Q 048235 149 VEDMERRGIVGSAALYYDLARCLCSAG---KCEEALMQMDKICKVANKPLVVSYTGLIQACLDS----GNIQNAAYIFNQ 221 (455)
Q Consensus 149 ~~~m~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~ 221 (455)
...+.+.-...++..+..|...|...| +.++|+..|++..+.|.. +...+..|...|... +++++|...|++
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 222221111111224444555555555 555555555555555422 333334444444333 455555555555
Q ss_pred HHhcCCCCHHHHHHHHHH-H--HhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcC-----CH
Q 048235 222 MKNFCSPNLVTCNIMVKA-Y--LEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK-----RW 293 (455)
Q Consensus 222 ~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-----~~ 293 (455)
.. +-+...+..|... | ...+++++|.++|++..+.| +...+..|...|. .| ++
T Consensus 243 aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---------------~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 243 IA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---------------QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp HG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---------------CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred Hc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---------------CHHHHHHHHHHHH-cCCCCCCCH
Confidence 44 3344444444444 2 33555555555555555443 3444444444444 33 55
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhc
Q 048235 294 DDLELVYKRMLHHGLHFNAKRHLRMILDASR----AGKVELLEITWEHLARA 341 (455)
Q Consensus 294 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~ 341 (455)
++|.++|++.. .| +...+..+-..|.. ..++++|...|+...+.
T Consensus 304 ~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 304 KAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 55555555544 22 23334444433333 22555555555555543
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.54 E-value=9.7e-11 Score=114.76 Aligned_cols=390 Identities=7% Similarity=-0.052 Sum_probs=247.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHH
Q 048235 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQ---WEGAFWVLQQ 82 (455)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~ 82 (455)
|..+|..++..+.+.+.++.+..+|+.+.. ..+.+...|...+..-.+.++ ++.+..+|++
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~----------------~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHD----------------RFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------HCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHH----------------HCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 677899999999999999999999999984 346667788888887777777 8888888888
Q ss_pred HHHcC-CCCCHhhHHHHHHHHHHcCCh--------hHHHHHHHHHHhc----CCCCHHHHHHHHHHHHh---------cC
Q 048235 83 LKQQG-QKPSATTYGLVMEVMLACGKY--------NLVYEFFRKVQKS----YIPNALAYKVLVNTLWR---------EG 140 (455)
Q Consensus 83 m~~~~-~~p~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~~----~~~~~~~~~~li~~~~~---------~g 140 (455)
..... ..|+...|...+....+.++. +.+.++|+..... .+.+...|...+..... .+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 87753 136777777776655555543 2344666665432 12345667766654332 23
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHH------------------------------------------------------
Q 048235 141 KTDEAVSAVEDMERRGIVGSAALYYD------------------------------------------------------ 166 (455)
Q Consensus 141 ~~~~a~~~~~~m~~~~~~~~~~~~~~------------------------------------------------------ 166 (455)
+++.+..+|+..+.........+|..
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 45666677766653211111122211
Q ss_pred -------------------HHHHHHhcC-------CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH-HHH
Q 048235 167 -------------------LARCLCSAG-------KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAA-YIF 219 (455)
Q Consensus 167 -------------------l~~~~~~~g-------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~ 219 (455)
.+..--..+ ..+.+..+|++..... +-+...|-..+..+...|+.+.|. .+|
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 111000000 0111223333333332 123444555555566778888896 999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC------------cHHHHHHHHHHH
Q 048235 220 NQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP------------DIYTFNTMLDAC 287 (455)
Q Consensus 220 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p------------~~~~~~~li~~~ 287 (455)
++....+|.+...|...+...-..|++++|.++|++++....... .... . ..| ....|...+...
T Consensus 368 ~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~-~~~~-~-~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 368 KLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDL-AALM-E-DDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HHHH-H-HSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh-hhhh-h-ccCcchhhhhhhccchHHHHHHHHHHH
Confidence 999877888888888899999999999999999999987420000 0000 0 013 234688888888
Q ss_pred HHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHH
Q 048235 288 AAEKRWDDLELVYKRMLHH-GLHFNAKRHLRMILDASRA-GKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGS 365 (455)
Q Consensus 288 ~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (455)
.+.|..+.|..+|.++++. +.. ....|......-.+. ++.+.|..+|+..++..+..+. .+..++......|+.+.
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~-~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGE-YINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchH-HHHHHHHHHHhCCCHHH
Confidence 8899999999999999885 221 223343333333344 4599999999999998765543 33334443447899999
Q ss_pred HHHHhhhcCCCCC-ccccHHHHHHHHhhhcccCCcc-hHHHHHHHhccccccccCC
Q 048235 366 AISCLVSHPVSGS-PEFSRNAWLKFFKENSQHFGQD-TLIQLLHEASSSLTTRNGS 419 (455)
Q Consensus 366 A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~ 419 (455)
|..+++......+ ......+|..++. +....++ +.+..+.+...+..|++..
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~--fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIF--FESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHH--HHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 9999998765443 2345688999888 4555555 5566666666668898753
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=2.7e-13 Score=121.57 Aligned_cols=240 Identities=13% Similarity=0.104 Sum_probs=172.2
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcC---
Q 048235 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ-------GQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY--- 122 (455)
Q Consensus 53 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 122 (455)
.+.+..++..+...+...|++++|..+|+++.+. .......++..+...+...|++++|...+++.....
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3445678999999999999999999999999873 233356778888899999999999999999886541
Q ss_pred -----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048235 123 -----IPNALAYKVLVNTLWREGKTDEAVSAVEDMERR------GIVG-SAALYYDLARCLCSAGKCEEALMQMDKICKV 190 (455)
Q Consensus 123 -----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 190 (455)
+....++..+...|...|++++|...+++..+. +..| ....+..+...+...|++++|...++++.+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 235677888999999999999999999998764 2222 3456778899999999999999999988765
Q ss_pred ------CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCC-------CHHHHHHHHHHHHhcCChhH
Q 048235 191 ------ANKP-LVVSYTGLIQACLDSGNIQNAAYIFNQMKNF--------CSP-------NLVTCNIMVKAYLEHGLFEE 248 (455)
Q Consensus 191 ------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~-------~~~~~~~li~~~~~~~~~~~ 248 (455)
+..| ...++..+...|...|++++|...++++.+. ..+ ....+..+...+...+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 2222 3567888999999999999999999988642 111 11222233333444556666
Q ss_pred HHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 249 a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
+...++...... ..+..++..+...|...|++++|.++|++..+
T Consensus 263 a~~~~~~~~~~~-------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 263 YGGWYKACKVDS-------------PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CC---------C-------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCC-------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 667777766532 22567788888899999999999999988876
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.53 E-value=9e-13 Score=125.47 Aligned_cols=212 Identities=14% Similarity=0.016 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCCh-hHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048235 73 WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKY-NLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVED 151 (455)
Q Consensus 73 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 151 (455)
+++++..++...... +.+...+..+..++...|++ ++|++.|++.....+.+..+|..+..+|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 566667777665543 23778888888999999999 9999999999888888899999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc--------CCHHH
Q 048235 152 MERRGIVGSAALYYDLARCLCSA---------GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS--------GNIQN 214 (455)
Q Consensus 152 m~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------~~~~~ 214 (455)
..+.. |+...+..+...+... |++++|...+++..+.... +...|..+..+|... |++++
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 98875 6678888899999999 9999999999999887644 688889999999988 99999
Q ss_pred HHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHc
Q 048235 215 AAYIFNQMKNFCS---PNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAE 290 (455)
Q Consensus 215 a~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 290 (455)
|...|++..+..+ .+...|..+..+|...|++++|.+.|++..+.. | +...+..+...+...
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--------------p~~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--------------PAWPEPQQREQQLLEFL 305 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHH
Confidence 9999999987666 688999999999999999999999999998854 5 567788888888888
Q ss_pred CCHHHHHHHHHH
Q 048235 291 KRWDDLELVYKR 302 (455)
Q Consensus 291 ~~~~~a~~~~~~ 302 (455)
|++++|.+.+.+
T Consensus 306 g~~~eAi~~~~~ 317 (474)
T 4abn_A 306 SRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHhcc
Confidence 888888775543
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.50 E-value=2.3e-12 Score=122.65 Aligned_cols=213 Identities=10% Similarity=-0.031 Sum_probs=185.0
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048235 108 YNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKT-DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDK 186 (455)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 186 (455)
++.+...++......+.+...+..+..++...|++ ++|+..|++..+.. +.+...+..+..+|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56677777777666667899999999999999999 99999999999875 34578899999999999999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc--------CChhHH
Q 048235 187 ICKVANKPLVVSYTGLIQACLDS---------GNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH--------GLFEEA 249 (455)
Q Consensus 187 m~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~~a 249 (455)
..+.. |+...+..+...+... |++++|...|++..+..+.+...|..+..+|... |++++|
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 99875 5678899999999999 9999999999999888888899999999999998 999999
Q ss_pred HHHHHHHHhcccccchhhccCCCCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 048235 250 MKLFQEMAEDSNHINREYDKKGLVIP----DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRA 325 (455)
Q Consensus 250 ~~~~~~m~~~~~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 325 (455)
...|++..+.. | +...|..+...|...|++++|.+.|++..+.... +...+..+...+...
T Consensus 241 ~~~~~~al~~~--------------p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 241 LSAYAQAEKVD--------------RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFL 305 (474)
T ss_dssp HHHHHHHHHHC--------------GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--------------CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Confidence 99999999854 5 7889999999999999999999999999984321 355677778888888
Q ss_pred CChHHHHHHHHHH
Q 048235 326 GKVELLEITWEHL 338 (455)
Q Consensus 326 g~~~~a~~~~~~~ 338 (455)
|++++|.+.+..+
T Consensus 306 g~~~eAi~~~~~~ 318 (474)
T 4abn_A 306 SRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHHHhccc
Confidence 9888888765544
No 70
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=4e-12 Score=120.21 Aligned_cols=60 Identities=8% Similarity=0.002 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHH
Q 048235 198 SYTGLIQACLDSG---NIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH----GLFEEAMKLFQEMA 257 (455)
Q Consensus 198 ~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~ 257 (455)
.+..|...|...| +.++|...|++..+..+++...+..|...|... +++++|..+|++..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 4444444444444 444455555444443344444334444444332 34455555555544
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.48 E-value=3.4e-12 Score=118.29 Aligned_cols=301 Identities=8% Similarity=-0.006 Sum_probs=210.4
Q ss_pred HHhcCChhHHHHHHHHhhcCCccccccccccccCCC--CCCCHhHHHHHHHHH--HhcCCHHHHH-----------HHHH
Q 048235 17 LGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPR--LEPDIVVYNAVLNAC--VRRKQWEGAF-----------WVLQ 81 (455)
Q Consensus 17 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~--~~~~~~~~a~-----------~~~~ 81 (455)
+.+.+++++|..+++++.+.- .. ..++...|-.++..- ...++++.+. +.++
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~-------------~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~ 88 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQEL-------------DQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLL 88 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-------------HTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHH-------------HhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHH
Confidence 567899999999999986420 11 133444555554432 2234444444 6666
Q ss_pred HHHHcCCCCCH----hhHHHHHHHHHHcCChhHHHHHHHHHHhcCC--C----CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048235 82 QLKQQGQKPSA----TTYGLVMEVMLACGKYNLVYEFFRKVQKSYI--P----NALAYKVLVNTLWREGKTDEAVSAVED 151 (455)
Q Consensus 82 ~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~ 151 (455)
.+.......+. ..+......+...|+++.|...|++...... + ...++..+..+|...|+++.|+..+++
T Consensus 89 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~ 168 (383)
T 3ulq_A 89 EIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168 (383)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66543211111 1112245567889999999999999876411 2 346788999999999999999999999
Q ss_pred HHHCC--C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CC-cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048235 152 MERRG--I----VGSAALYYDLARCLCSAGKCEEALMQMDKICKVAN----KP-LVVSYTGLIQACLDSGNIQNAAYIFN 220 (455)
Q Consensus 152 m~~~~--~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~----~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 220 (455)
..+.. . .....+++.+..+|...|++++|...+++..+... .+ ...++..+...|...|++++|...|+
T Consensus 169 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 248 (383)
T 3ulq_A 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK 248 (383)
T ss_dssp HHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 87641 1 11245778899999999999999999998765421 11 13578889999999999999999999
Q ss_pred HHHh-----cC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCC-
Q 048235 221 QMKN-----FC-SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKR- 292 (455)
Q Consensus 221 ~~~~-----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~- 292 (455)
+..+ .. +....++..+..+|...|++++|...+++..+.... . ..| ....+..+...|...|+
T Consensus 249 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~-~~~~~~~~~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 249 RAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK--------A-GDVIYLSEFEFLKSLYLSGPDE 319 (383)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------H-TCHHHHHHHHHHHHHHTSSCCH
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--------c-CCHHHHHHHHHHHHHHhCCCcH
Confidence 9866 33 445677899999999999999999999998764300 0 012 22335667778888888
Q ss_pred --HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 048235 293 --WDDLELVYKRMLHHGLHFN-AKRHLRMILDASRAGKVELLEITWEHLARAD 342 (455)
Q Consensus 293 --~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 342 (455)
+++|..++++. +..|+ ...+..+...|...|++++|...+++..+..
T Consensus 320 ~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 320 EAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 66676666654 33333 3456667778899999999999999886543
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=2.9e-12 Score=114.72 Aligned_cols=242 Identities=13% Similarity=0.070 Sum_probs=151.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C
Q 048235 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERR-------GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV------A 191 (455)
Q Consensus 125 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~ 191 (455)
+..++..+...+...|++++|..+++++.+. ........+..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4466777777888888888888888877663 22233456677788888888888888888877654 2
Q ss_pred C-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccc
Q 048235 192 N-KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF--------CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNH 262 (455)
Q Consensus 192 ~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 262 (455)
. +....++..+...|...|++++|...|++..+. .+.....+..+...|...|++++|.++++++.+....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 223567788888888899999999888887543 1234566888899999999999999999998875100
Q ss_pred cchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCCHH-------HHHHHHHHHHhcCC
Q 048235 263 INREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHH-------GLHFNAK-------RHLRMILDASRAGK 327 (455)
Q Consensus 263 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~-------~~~~ll~~~~~~g~ 327 (455)
..+...| ...++..+...|...|++++|.++++++.+. ...+... .+......+...+.
T Consensus 186 ------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311)
T 3nf1_A 186 ------KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259 (311)
T ss_dssp ------TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred ------HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence 0000234 3567888999999999999999999999862 1111111 12222223344555
Q ss_pred hHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhc
Q 048235 328 VELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSH 373 (455)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 373 (455)
+.++...+.......+..+ ..+..+...+.+.|++++|.+++++.
T Consensus 260 ~~~a~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 260 FGEYGGWYKACKVDSPTVT-TTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp SCCCC---------CHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCchHH-HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5556666666654332211 12233334445888899998888764
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.45 E-value=5.8e-11 Score=109.76 Aligned_cols=315 Identities=10% Similarity=0.012 Sum_probs=214.0
Q ss_pred CCCCHhhHHHHHHHH--HhcCChhHHHHHHHHhhcCCccccccccccccCCC-CCCCHhHHHHHHHHH--HhcCCHHHHH
Q 048235 3 SYPDTVAYRSIAVTL--GQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPR-LEPDIVVYNAVLNAC--VRRKQWEGAF 77 (455)
Q Consensus 3 ~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~--~~~~~~~~a~ 77 (455)
+.|+...-+.+-.-| .+.+++++|.++++++.... +.. ..++...|-.++..- ...+.+..+.
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~------------~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~ 73 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDI------------QQMEEDQDLLIYYSLMCFRHQLMLDYLEPGK 73 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHG------------GGBCCCHHHHHHHHHHHHHHHHHHHTCCC--
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH------------HHhcccHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 445555555555555 78999999999999876420 011 133444555555431 1112222222
Q ss_pred ---------HHHHHHHHcCCCCCH----hhHHHHHHHHHHcCChhHHHHHHHHHHhcCC--C----CHHHHHHHHHHHHh
Q 048235 78 ---------WVLQQLKQQGQKPSA----TTYGLVMEVMLACGKYNLVYEFFRKVQKSYI--P----NALAYKVLVNTLWR 138 (455)
Q Consensus 78 ---------~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~li~~~~~ 138 (455)
..++.+.....+.+. ..+......+...|+++.|...|++...... + ...++..+..+|..
T Consensus 74 ~~~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~ 153 (378)
T 3q15_A 74 TYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYH 153 (378)
T ss_dssp ------CHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH
Confidence 556655432111111 1122234456789999999999999875422 2 34678889999999
Q ss_pred cCChHHHHHHHHHHHHCC--C---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CcHHHHHHHHHHHH
Q 048235 139 EGKTDEAVSAVEDMERRG--I---VG-SAALYYDLARCLCSAGKCEEALMQMDKICKV----ANK-PLVVSYTGLIQACL 207 (455)
Q Consensus 139 ~g~~~~a~~~~~~m~~~~--~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~ 207 (455)
.|+++.|...+++..+.. . .+ ...+++.+..+|...|++++|...+++..+. +.. ....++..+...|.
T Consensus 154 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 233 (378)
T 3q15_A 154 MKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD 233 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999999999887631 1 11 2457788999999999999999999987653 211 12457888999999
Q ss_pred hcCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHH
Q 048235 208 DSGNIQNAAYIFNQMKN-----FCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNT 282 (455)
Q Consensus 208 ~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~ 282 (455)
..|++++|...|++... ..+....++..+..+|...|++++|...+++..+.... .+.+.....+..
T Consensus 234 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~~~~~~ 305 (378)
T 3q15_A 234 RSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA--------RSHKFYKELFLF 305 (378)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT--------TCCSCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--------cCCHHHHHHHHH
Confidence 99999999999999876 44445778889999999999999999999999875310 001112345666
Q ss_pred HHHHHHHcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048235 283 MLDACAAEKR---WDDLELVYKRMLHHGLHFN-AKRHLRMILDASRAGKVELLEITWEHLAR 340 (455)
Q Consensus 283 li~~~~~~~~---~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 340 (455)
+...|...++ +.+|..++++ .+..|+ ...+..+...|...|++++|...|+...+
T Consensus 306 l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 306 LQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6667777788 6677766665 333333 23556677778999999999999998764
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.43 E-value=2.6e-10 Score=105.14 Aligned_cols=274 Identities=12% Similarity=0.021 Sum_probs=196.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh----hHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CC----HHH
Q 048235 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSAT----TYGLVMEVMLACGKYNLVYEFFRKVQKSYI--PN----ALA 128 (455)
Q Consensus 59 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~ 128 (455)
.+......+...|++++|...+++........+.. ++..+...+...|+++.|...+++.....+ .+ ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34444556778999999999999988764322222 455666778899999999999998765322 22 234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CcHH
Q 048235 129 YKVLVNTLWREGKTDEAVSAVEDMERR----GIV--G-SAALYYDLARCLCSAGKCEEALMQMDKICKVANK----PLVV 197 (455)
Q Consensus 129 ~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~----~~~~ 197 (455)
+..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... ....
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 667788899999999999999988753 222 2 2345666888899999999999999988765322 1245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC-CHHHHH-----HHHHHHHhcCChhHHHHHHHHHHhcccccchhhccC
Q 048235 198 SYTGLIQACLDSGNIQNAAYIFNQMKNF-CSP-NLVTCN-----IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKK 270 (455)
Q Consensus 198 ~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 270 (455)
++..+...+...|++++|...+++.... ..+ +...+. ..+..+...|++++|...+++.......
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-------- 247 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA-------- 247 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT--------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCC--------
Confidence 6788889999999999999999988653 222 111222 2334477899999999999988764300
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 048235 271 GLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH----GLHFNA-KRHLRMILDASRAGKVELLEITWEHLARA 341 (455)
Q Consensus 271 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 341 (455)
........+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++....
T Consensus 248 -~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 248 -NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp -TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 00112345677788999999999999999988652 222222 25555666788999999999999987654
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=1.1e-11 Score=114.85 Aligned_cols=228 Identities=10% Similarity=0.090 Sum_probs=178.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC--C-----CHHHHH
Q 048235 63 VLNACVRRKQWEGAFWVLQQLKQQ----GQKP-SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI--P-----NALAYK 130 (455)
Q Consensus 63 li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~ 130 (455)
....+...|++++|...|++..+. +-.+ ...++..+...|...|+++.|...+++...... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556778899999999999999874 1111 346788888999999999999999998865322 2 245788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCcHHHHH
Q 048235 131 VLVNTLWREGKTDEAVSAVEDMERRGIV-GS----AALYYDLARCLCSAGKCEEALMQMDKICKV----AN-KPLVVSYT 200 (455)
Q Consensus 131 ~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~ 200 (455)
.+..+|...|++++|+..+++..+.... ++ ..++..+..+|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999988764111 11 246788999999999999999999998762 33 33477889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcccccchhhccCCC
Q 048235 201 GLIQACLDSGNIQNAAYIFNQMKNF-----CSPNLVTCNIMVKAYLEHGL---FEEAMKLFQEMAEDSNHINREYDKKGL 272 (455)
Q Consensus 201 ~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~~~ 272 (455)
.+...|.+.|++++|...+++..+. .+.....+..+...|...|+ +++|+.++++. +
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~------------ 333 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---M------------ 333 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---T------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---c------------
Confidence 9999999999999999999987543 12223345678888888898 77777777765 2
Q ss_pred CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 273 VIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 273 ~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
..| ....+..+...|...|++++|...+++..+
T Consensus 334 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 334 LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 223 456777888999999999999999999876
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=3.3e-10 Score=104.40 Aligned_cols=273 Identities=14% Similarity=0.075 Sum_probs=195.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048235 10 YRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDI----VVYNAVLNACVRRKQWEGAFWVLQQLKQ 85 (455)
Q Consensus 10 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~ 85 (455)
+......+...|++++|...+++.... ....+. .+++.+...+...|++++|...+++...
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~---------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 81 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEE---------------LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ 81 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT---------------CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc---------------CCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 334445677889999999999998752 111222 2567777888999999999999999876
Q ss_pred cCCC-CC----HhhHHHHHHHHHHcCChhHHHHHHHHHHhcC----C---C-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048235 86 QGQK-PS----ATTYGLVMEVMLACGKYNLVYEFFRKVQKSY----I---P-NALAYKVLVNTLWREGKTDEAVSAVEDM 152 (455)
Q Consensus 86 ~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 152 (455)
.... .+ ..++..+...+...|+++.|...+++..... . + ...++..+...+...|++++|...+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (373)
T 1hz4_A 82 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 161 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3211 12 2335667778899999999999999876431 1 1 2345677888999999999999999998
Q ss_pred HHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--HHHHH----HHHHHHHhcCCHHHHHHHHHHH
Q 048235 153 ERRGIV----GSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL--VVSYT----GLIQACLDSGNIQNAAYIFNQM 222 (455)
Q Consensus 153 ~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~----~li~~~~~~~~~~~a~~~~~~~ 222 (455)
...... ....++..+...+...|++++|...+++.......++ ..... ..+..+...|+++.|...+++.
T Consensus 162 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 162 IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 241 (373)
T ss_dssp HHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 765321 1245677788899999999999999998875422211 11111 2334577999999999999988
Q ss_pred HhcCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcH-HHHHHHHHHHHHcCCHHHHH
Q 048235 223 KNFCSPN----LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI-YTFNTMLDACAAEKRWDDLE 297 (455)
Q Consensus 223 ~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~ 297 (455)
....+.+ ...+..+...+...|++++|...+++....... .+..++. ..+..+..++...|+.++|.
T Consensus 242 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~ 313 (373)
T 1hz4_A 242 AKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS--------LRLMSDLNRNLLLLNQLYWQAGRKSDAQ 313 (373)
T ss_dssp CCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CcchhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 6532211 335677888999999999999999998764300 0011222 36666778899999999999
Q ss_pred HHHHHHHH
Q 048235 298 LVYKRMLH 305 (455)
Q Consensus 298 ~~~~~m~~ 305 (455)
..+++...
T Consensus 314 ~~l~~al~ 321 (373)
T 1hz4_A 314 RVLLDALK 321 (373)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998876
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.42 E-value=5.3e-11 Score=97.50 Aligned_cols=165 Identities=18% Similarity=0.126 Sum_probs=112.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048235 8 VAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG 87 (455)
Q Consensus 8 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 87 (455)
..|..+...+...|++++|++.|+++.. ..+.+..++..+...+...|++++|...++++.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 72 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYD----------------ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA 72 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCC----------------TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH----------------hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3466667777777888888887777763 224456677777777777777777777777777653
Q ss_pred CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048235 88 QKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDL 167 (455)
Q Consensus 88 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 167 (455)
.. +...+..+...+...|+++.|.+.++++....+.+...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 73 ~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 150 (186)
T 3as5_A 73 PD-NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAI 150 (186)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHH
Confidence 22 566666666777777777777777777766666666677777777777777777777777766653 3345556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 048235 168 ARCLCSAGKCEEALMQMDKICKV 190 (455)
Q Consensus 168 ~~~~~~~g~~~~a~~~~~~m~~~ 190 (455)
...+...|++++|...+++..+.
T Consensus 151 a~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 151 AFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 66666677777777666665543
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=4.9e-11 Score=97.76 Aligned_cols=163 Identities=15% Similarity=0.052 Sum_probs=95.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048235 95 YGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174 (455)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 174 (455)
+..+...+...|+++.|...++++....+.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 33444445555555555555555544444455555555555555566666666655555542 22344555555556666
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 048235 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254 (455)
Q Consensus 175 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 254 (455)
|++++|...++++.+... .+...+..+...+...|++++|...++++.+..+.+...+..+...+...|++++|...++
T Consensus 90 ~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666666555432 2455566666666666666666666666655555556666666667777777777777776
Q ss_pred HHHhc
Q 048235 255 EMAED 259 (455)
Q Consensus 255 ~m~~~ 259 (455)
++.+.
T Consensus 169 ~~~~~ 173 (186)
T 3as5_A 169 KANEL 173 (186)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 66554
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=4.7e-11 Score=118.36 Aligned_cols=165 Identities=17% Similarity=0.188 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 048235 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204 (455)
Q Consensus 125 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 204 (455)
+..+|+.|..+|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|+..|++..+.... +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45566666666666666666666666666653 223555666666666666677766666666665432 4566666677
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHH
Q 048235 205 ACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTM 283 (455)
Q Consensus 205 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~l 283 (455)
+|...|++++|.+.|++..+..+.+...|+.+..+|...|++++|++.|++.++.. | +...|..+
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--------------P~~~~a~~~L 151 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK--------------PDFPDAYCNL 151 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------SCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CCChHHHhhh
Confidence 77777777777777776666555666677777777777777777777777776643 4 45666667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 048235 284 LDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 284 i~~~~~~~~~~~a~~~~~~m~~ 305 (455)
...+...|++++|.+.++++.+
T Consensus 152 ~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 152 AHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHTTCCTTHHHHHHHHHH
T ss_pred hhHHHhcccHHHHHHHHHHHHH
Confidence 7777777777777666666554
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.36 E-value=2.4e-10 Score=97.44 Aligned_cols=201 Identities=12% Similarity=0.002 Sum_probs=149.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 048235 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLI 203 (455)
Q Consensus 124 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 203 (455)
.++..+......+...|++++|+..|++..+....++...+..+..++...|++++|...+++..+..+. +..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567777778888888888888888888887764366666666888888888888888888888876533 567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCc
Q 048235 204 QACLDSGNIQNAAYIFNQMKNFCSPNL-------VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD 276 (455)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~ 276 (455)
..|...|++++|...|++..+..+.+. ..|..+...+...|++++|...|++.++.. |+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------p~ 149 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--------------SK 149 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--------------CH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--------------CC
Confidence 888888888888888888877666666 557888888899999999999999998854 65
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCh
Q 048235 277 ---IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPP 347 (455)
Q Consensus 277 ---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 347 (455)
...|..+...|...| ..+++++...+. .+...|.... ....+.+++|...+++..+..+..++
T Consensus 150 ~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 150 KWKTDALYSLGVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred cccHHHHHHHHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 466777777776544 344556555432 2333443333 34456789999999999988876654
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.36 E-value=2.5e-10 Score=97.27 Aligned_cols=196 Identities=15% Similarity=0.078 Sum_probs=151.9
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 048235 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLV 133 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 133 (455)
+.|+..|......+...|++++|...|++..+....++...+..+..++...|++++|...|++.....+.+..+|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 35678899999999999999999999999999876568888888999999999999999999999988878889999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc---HHHHHHHH
Q 048235 134 NTLWREGKTDEAVSAVEDMERRGIVGSA-------ALYYDLARCLCSAGKCEEALMQMDKICKVANKPL---VVSYTGLI 203 (455)
Q Consensus 134 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li 203 (455)
.+|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|...+++..+.. |+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHH
Confidence 99999999999999999998875 2334 457778888999999999999999998864 43 56777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048235 204 QACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
.+|...|+. +++.+....+.+...|..... ...+.+++|...|++..+.
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEKA--KADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 777655443 344443333334444433322 2334566666666666553
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=8.5e-11 Score=116.53 Aligned_cols=166 Identities=14% Similarity=0.060 Sum_probs=105.1
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048235 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVN 134 (455)
Q Consensus 55 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 134 (455)
-+..+|+.|...|.+.|++++|++.|++..+.... +...+..+..+|.+.|++++|+..|++..+..+.+..+|..+..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34566777777777777777777777777665433 45666666666667777777777777666665566666666666
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH
Q 048235 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQN 214 (455)
Q Consensus 135 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 214 (455)
+|.+.|++++|++.|++..+.+ +-+...++.+..+|...|++++|+..|++..+.... +...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 6666666666666666666553 223455666666666666666666666666655422 45555566666666666666
Q ss_pred HHHHHHHHH
Q 048235 215 AAYIFNQMK 223 (455)
Q Consensus 215 a~~~~~~~~ 223 (455)
|.+.++++.
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655554
No 83
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.33 E-value=2.5e-09 Score=104.89 Aligned_cols=370 Identities=9% Similarity=0.008 Sum_probs=203.4
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCC---hhHHHHHHHHHHhcCC--CCHHH
Q 048235 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK---YNLVYEFFRKVQKSYI--PNALA 128 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~--~~~~~ 128 (455)
+-|..+|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.++ ++.+..+|++.....+ |++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 679999999999999999999999999999987 44477888888888888888 9999999999998874 89999
Q ss_pred HHHHHHHHHhcCCh--------HHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 048235 129 YKVLVNTLWREGKT--------DEAVSAVEDMER-RGI-VGS-AALYYDLARCLCS---------AGKCEEALMQMDKIC 188 (455)
Q Consensus 129 ~~~li~~~~~~g~~--------~~a~~~~~~m~~-~~~-~~~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~m~ 188 (455)
|...+....+.++. +...++|+.... .|. .++ ...|...+..... .++.+.+..+|.+..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 99988876666554 334477777655 355 443 5677776665432 345677888888877
Q ss_pred HcCCCCcHHHHH---HHHHHHH----------hcCCHHHHHHHHHHHHh---cC----C-----------C-----C---
Q 048235 189 KVANKPLVVSYT---GLIQACL----------DSGNIQNAAYIFNQMKN---FC----S-----------P-----N--- 229 (455)
Q Consensus 189 ~~~~~~~~~~~~---~li~~~~----------~~~~~~~a~~~~~~~~~---~~----~-----------~-----~--- 229 (455)
......-..+|. .+-..+. ...+++.|...+.++.. .+ + | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 532111122332 1111100 01123334444443321 10 0 0 0
Q ss_pred HHHHHHHHHHHHhcC-------ChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHH-HHHH
Q 048235 230 LVTCNIMVKAYLEHG-------LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLE-LVYK 301 (455)
Q Consensus 230 ~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~-~~~~ 301 (455)
...|...+.---..+ ..+.+..+|++.+... +-+...|...+..+...|+.++|. ++|+
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-------------p~~~~lW~~ya~~~~~~~~~~~a~r~il~ 368 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-------------CFAPEIWFNMANYQGEKNTDSTVITKYLK 368 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-------------TTCHHHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-------------CCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 123333333222221 1223445666666542 225566666666666666666664 6666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC---------CCC-----------hH-hHHHHHHHHhhc
Q 048235 302 RMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADR---------ITP-----------PA-LIKERFCNRLEN 360 (455)
Q Consensus 302 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---------~~~-----------~~-~~~~~~~~~~~~ 360 (455)
+.... .+.+...+..++....+.|+++.|.++|+.++...+ .|. .. ++..+.....+.
T Consensus 369 rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 369 LGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 66653 233444445555555666666666666666654310 111 01 122222222255
Q ss_pred cchHHHHHHhhhcCCC-CCccccHHHHHHHHhhhcccCC-cchHHHHHHHhccccccccCCCchhHHHHHHhHHhhhhcc
Q 048235 361 KDYGSAISCLVSHPVS-GSPEFSRNAWLKFFKENSQHFG-QDTLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDFLRTQ 438 (455)
Q Consensus 361 ~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~ 438 (455)
|+.+.|..++..+... +...+ .+|..........+. .+.+...+.+.++ ..|+++..+...+......|+..+|.
T Consensus 448 ~~l~~AR~vf~~A~~~~~~~~~--~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk-~~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRLKKLVTP--DIYLENAYIEYHISKDTKTACKVLELGLK-YFATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HCHHHHHHHHHHHHHTGGGSCT--HHHHHHHHHHHTTTSCCHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 6666666666655433 21111 233221111012222 2334444444444 45666665555555555666665555
Q ss_pred CCc
Q 048235 439 SPA 441 (455)
Q Consensus 439 ~~~ 441 (455)
.+.
T Consensus 525 ~lf 527 (679)
T 4e6h_A 525 SLF 527 (679)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.31 E-value=3.9e-11 Score=105.60 Aligned_cols=155 Identities=17% Similarity=0.140 Sum_probs=93.4
Q ss_pred hcCCHHHHHHHHHHHHHc-------CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcC--------CCCHHHHHHHH
Q 048235 69 RRKQWEGAFWVLQQLKQQ-------GQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSY--------IPNALAYKVLV 133 (455)
Q Consensus 69 ~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~li 133 (455)
..|++++|...|++..+. ..+....++..+...+...|+++.|...++++.... +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 567777777777776652 111234556666666777777777777777665331 12345666667
Q ss_pred HHHHhcCChHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-cHHHH
Q 048235 134 NTLWREGKTDEAVSAVEDMERR------GI-VGSAALYYDLARCLCSAGKCEEALMQMDKICKV------ANKP-LVVSY 199 (455)
Q Consensus 134 ~~~~~~g~~~~a~~~~~~m~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~~ 199 (455)
.+|...|++++|...+++..+. .. +....++..+...|...|++++|...+++..+. ...| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 7777777777777777766553 11 122445566666666777777777777666554 1112 24456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 048235 200 TGLIQACLDSGNIQNAAYIFNQMK 223 (455)
Q Consensus 200 ~~li~~~~~~~~~~~a~~~~~~~~ 223 (455)
..+...|...|++++|...+++..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666666777777776666654
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.31 E-value=2e-10 Score=101.01 Aligned_cols=205 Identities=14% Similarity=0.093 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------
Q 048235 161 AALYYDLARCLCSAGKCEEALMQMDKICKV------ANKP-LVVSYTGLIQACLDSGNIQNAAYIFNQMKNF-------- 225 (455)
Q Consensus 161 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------- 225 (455)
..++..+...|...|++++|...+++..+. +..| ...++..+...|...|++++|...|++....
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 445556666666667777766666665543 1112 3456677777777777777777777776542
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048235 226 CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRML 304 (455)
Q Consensus 226 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 304 (455)
.+....++..+...|...|++++|...++++.+.... ..+...| ...++..+...|...|++++|..+++++.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT------RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH------HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1234567788888899999999999999988875100 0000134 45788889999999999999999999988
Q ss_pred Hc-------CCCCCHHHHHHHHHH-HHhcCChH------HHHHHHHHHhhcCCCCChH--hHHHHHHHHhhccchHHHHH
Q 048235 305 HH-------GLHFNAKRHLRMILD-ASRAGKVE------LLEITWEHLARADRITPPA--LIKERFCNRLENKDYGSAIS 368 (455)
Q Consensus 305 ~~-------~~~p~~~~~~~ll~~-~~~~g~~~------~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~A~~ 368 (455)
+. ...+....+...+.. +...+... .+...++.. ...++.. ....+...+...|++++|..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 273 (283)
T 3edt_B 197 TRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC---KVDSPTVNTTLRSLGALYRRQGKLEAAHT 273 (283)
T ss_dssp HHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC---CCCCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 63 122222222222222 22222222 222222222 1122221 22233333448899999998
Q ss_pred HhhhcC
Q 048235 369 CLVSHP 374 (455)
Q Consensus 369 ~~~~~~ 374 (455)
++++..
T Consensus 274 ~~~~al 279 (283)
T 3edt_B 274 LEDCAS 279 (283)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.30 E-value=7.4e-10 Score=98.28 Aligned_cols=196 Identities=10% Similarity=-0.021 Sum_probs=123.9
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCC----HHHHHHHHHH
Q 048235 171 LCSAGKCEEALMQMDKICKV----ANKPL-VVSYTGLIQACLDSGNIQNAAYIFNQMKNFC--SPN----LVTCNIMVKA 239 (455)
Q Consensus 171 ~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~li~~ 239 (455)
|...|++++|...|.+.... |.+++ ..+|+.+..+|.+.|++++|...|++..+.. ..+ ..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44456666666555554332 21111 3456666666767777777776666654321 111 3467788888
Q ss_pred HHhc-CChhHHHHHHHHHHhcccccchhhccCCCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----
Q 048235 240 YLEH-GLFEEAMKLFQEMAEDSNHINREYDKKGLVIP--DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA---- 312 (455)
Q Consensus 240 ~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---- 312 (455)
|... |++++|+..|++.++.... . ..+ ...++..+...+...|++++|...|++..+.......
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~--------~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQ--------D-QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHH--------T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHh--------C-CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 9996 9999999999999875300 0 001 1457888999999999999999999999984332211
Q ss_pred --HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHH---HHh---hccchHHHHHHhhhcCC
Q 048235 313 --KRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFC---NRL---ENKDYGSAISCLVSHPV 375 (455)
Q Consensus 313 --~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~A~~~~~~~~~ 375 (455)
..+..+..++...|++++|...|++..+..+..++......+. ..+ ..+++++|+..++.+..
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 1466677778999999999999999988776555432111221 122 45678888888876654
No 87
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=3.5e-10 Score=104.45 Aligned_cols=229 Identities=13% Similarity=0.042 Sum_probs=175.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC----CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC--C-----CHHH
Q 048235 61 NAVLNACVRRKQWEGAFWVLQQLKQQGQ-KP----SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI--P-----NALA 128 (455)
Q Consensus 61 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~ 128 (455)
......+...|++++|...|++..+... .+ ...++..+..+|...|+++.|...+++...... + ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3344567789999999999999986421 12 245777888899999999999999998765321 1 2457
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCcHHH
Q 048235 129 YKVLVNTLWREGKTDEAVSAVEDMERR----GIV-GSAALYYDLARCLCSAGKCEEALMQMDKICK-----VANKPLVVS 198 (455)
Q Consensus 129 ~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~ 198 (455)
++.+..+|...|++++|...|++..+. +.. ....++..+..+|...|++++|...+++... .. +....+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHH
Confidence 888999999999999999999988763 211 1235677899999999999999999999876 33 234778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcccccchhhccC
Q 048235 199 YTGLIQACLDSGNIQNAAYIFNQMKNF-----CSPNLVTCNIMVKAYLEHGL---FEEAMKLFQEMAEDSNHINREYDKK 270 (455)
Q Consensus 199 ~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~ 270 (455)
+..+...|.+.|++++|...+++..+. .+.....+..+...|...++ +.+|+..+++. +
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~---------- 330 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---N---------- 330 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---T----------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---C----------
Confidence 889999999999999999999998654 22224456666667777888 77777777762 2
Q ss_pred CCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 271 GLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 271 ~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
..| ....+..+...|...|++++|...|++..+
T Consensus 331 --~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 331 --LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 223 345667788899999999999999998876
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.29 E-value=1e-09 Score=95.76 Aligned_cols=250 Identities=13% Similarity=0.087 Sum_probs=174.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChH
Q 048235 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTD 143 (455)
Q Consensus 64 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 143 (455)
++-..-.|.+..++.- ..+.........-..+.+++...|++.... ...|...++..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHh-ccc---
Confidence 3445568999888873 332222222334444568888999887421 2224544555544443 322
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048235 144 EAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVAN-KPLVVSYTGLIQACLDSGNIQNAAYIFNQM 222 (455)
Q Consensus 144 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 222 (455)
|+..|++..+.+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 778888877665 45666667889999999999999999999877664 236788889999999999999999999999
Q ss_pred HhcCCC-----CHHHHHHHHHHHH--hcC--ChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCH
Q 048235 223 KNFCSP-----NLVTCNIMVKAYL--EHG--LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRW 293 (455)
Q Consensus 223 ~~~~~~-----~~~~~~~li~~~~--~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 293 (455)
.+. .| +..+...|..++. ..| ++.+|..+|+++.+.. |+..+-..++.++.+.|++
T Consensus 163 ~~~-~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--------------p~~~~~~lLln~~~~~g~~ 227 (310)
T 3mv2_B 163 TNA-IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--------------PTWKTQLGLLNLHLQQRNI 227 (310)
T ss_dssp HHH-SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--------------CSHHHHHHHHHHHHHHTCH
T ss_pred Hhc-CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--------------CCcccHHHHHHHHHHcCCH
Confidence 763 34 3555566665633 334 8999999999997753 6644444555589999999
Q ss_pred HHHHHHHHHHHHc-----CC---CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCh
Q 048235 294 DDLELVYKRMLHH-----GL---HF-NAKRHLRMILDASRAGKVELLEITWEHLARADRITPP 347 (455)
Q Consensus 294 ~~a~~~~~~m~~~-----~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 347 (455)
++|.+.++.+.+. .. .| ++.+...++......|+ +|.++++++.+..|.+|-
T Consensus 228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 9999999977653 11 23 44566456656566776 889999999998877663
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.20 E-value=7.7e-09 Score=90.25 Aligned_cols=255 Identities=11% Similarity=0.074 Sum_probs=173.2
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh
Q 048235 15 VTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATT 94 (455)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 94 (455)
+-.--.|.+..++.-...+.. ..+...-.-+.++|...|++... ..-.|....
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~------------------~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a 73 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK------------------VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKV 73 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC------------------CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHH
T ss_pred HHHHHhhHHHHHHHHHHhcCc------------------cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHH
Confidence 344457888888884444321 12223444456888888887642 122344334
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHh
Q 048235 95 YGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGI-VGSAALYYDLARCLCS 173 (455)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~ 173 (455)
+..+.. |...+ +...|+++.....++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+
T Consensus 74 ~~~la~-~~~~~----a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~ 148 (310)
T 3mv2_B 74 LDLYVQ-FLDTK----NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL 148 (310)
T ss_dssp HHHHHH-HHTTT----CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHH-Hhccc----HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH
Confidence 444433 33322 67888887766556677777888999999999999999999877664 2356777889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-----cHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 048235 174 AGKCEEALMQMDKICKVANKP-----LVVSYTGLIQAC--LDSG--NIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHG 244 (455)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 244 (455)
.|+.+.|.+.+++|.+.. | +..+...|..++ ...| ++..|..+|+++.+. .|+..+-..++.++...|
T Consensus 149 ~~r~d~A~k~l~~~~~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-~p~~~~~~lLln~~~~~g 225 (310)
T 3mv2_B 149 NNNVSTASTIFDNYTNAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-FPTWKTQLGLLNLHLQQR 225 (310)
T ss_dssp TTCHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT-SCSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-CCCcccHHHHHHHHHHcC
Confidence 999999999999998863 4 355666666663 3334 899999999998664 354334444555899999
Q ss_pred ChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 048235 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNA 312 (455)
Q Consensus 245 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 312 (455)
++++|.+.++.+.+.... ...+....| +..++..+|......|+ +|.++++++.+ ..|+.
T Consensus 226 ~~~eAe~~L~~l~~~~p~----~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~h 286 (310)
T 3mv2_B 226 NIAEAQGIVELLLSDYYS----VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEH 286 (310)
T ss_dssp CHHHHHHHHHHHHSHHHH----TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCC
T ss_pred CHHHHHHHHHHHHHhccc----ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCC
Confidence 999999999987663100 000000014 67777667766666786 88999999999 44664
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.18 E-value=3.1e-09 Score=81.70 Aligned_cols=130 Identities=20% Similarity=0.273 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 048235 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWR 138 (455)
Q Consensus 59 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 138 (455)
+|..+...+...|++++|..+|+++.+.+.. +...+..+...+...|+++.|..+++++....+.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4566667777777777777777777665432 455666666666777777777777777666655566666666677777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048235 139 EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKV 190 (455)
Q Consensus 139 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 190 (455)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++++...
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777777666653 234455556666666666666666666666554
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.18 E-value=3.7e-09 Score=81.23 Aligned_cols=131 Identities=20% Similarity=0.289 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 048235 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACL 207 (455)
Q Consensus 128 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 207 (455)
+|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++..... .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 45566667777777777777777776654 23455666677777777777777777777766543 25566677777777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 208 DSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
..|++++|...++++....+.+..++..+...+...|++++|...++++....
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 77888888888877766556667777777788888888888888888777643
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=1.8e-09 Score=95.72 Aligned_cols=201 Identities=13% Similarity=-0.005 Sum_probs=150.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CC----H
Q 048235 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQ----GQKPS-ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI--PN----A 126 (455)
Q Consensus 58 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~----~ 126 (455)
..|+.....|...|++++|...|.+..+. |-.++ ..+|+.+..+|.+.|++++|...|++.....+ .+ .
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35666777888999999999999988764 22222 56888899999999999999999998765322 12 4
Q ss_pred HHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH----
Q 048235 127 LAYKVLVNTLWRE-GKTDEAVSAVEDMERRGIVG-S----AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLV---- 196 (455)
Q Consensus 127 ~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~---- 196 (455)
.+++.+..+|... |++++|+..|++..+..... + ..++..+...+...|++++|+..|++..+.......
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5788999999996 99999999999987642111 1 356788999999999999999999999886543222
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHH--hcCChhHHHHHHHHHHh
Q 048235 197 --VSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNL-----VTCNIMVKAYL--EHGLFEEAMKLFQEMAE 258 (455)
Q Consensus 197 --~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~li~~~~--~~~~~~~a~~~~~~m~~ 258 (455)
.+|..+..++...|+++.|...|++..+..+... ..+..++.+|. ..+++++|+..|+++..
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 2577888899999999999999999876322211 13444566664 45678888888877655
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.17 E-value=2.6e-09 Score=93.09 Aligned_cols=187 Identities=10% Similarity=0.028 Sum_probs=125.5
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC---CCHH
Q 048235 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPS---ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI---PNAL 127 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~ 127 (455)
+.+...+-.+...+.+.|++++|...|+++.+.... + ...+..+..++.+.|+++.|...|+++....+ ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 445667777777778888888888888888775432 2 45666677777788888888888888776644 2245
Q ss_pred HHHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHH
Q 048235 128 AYKVLVNTLWR--------EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSY 199 (455)
Q Consensus 128 ~~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 199 (455)
++..+..++.. .|++++|+..|+++.+.... +......+.. +..+... ....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHH
Confidence 56667777777 77778888777777765311 1111111110 0000000 01124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhc----------CChhHHHHHHHHHHhcc
Q 048235 200 TGLIQACLDSGNIQNAAYIFNQMKNFCSP---NLVTCNIMVKAYLEH----------GLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 200 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~~ 260 (455)
..+...|.+.|++++|...|+.+.+..+. ....+..+..+|... |++++|...|+++.+..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 56788899999999999999998765433 345777888888866 88999999999999854
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.15 E-value=3.6e-09 Score=92.10 Aligned_cols=187 Identities=12% Similarity=0.037 Sum_probs=121.5
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHH
Q 048235 6 DTVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPD---IVVYNAVLNACVRRKQWEGAFWVLQQ 82 (455)
Q Consensus 6 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~ 82 (455)
+...+-.....+.+.|++++|+..|+.+... .+.+ ..++..+..+|.+.|++++|...|++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----------------~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 77 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY----------------GRTHEWAADAQFYLARAYYQNKEYLLAASEYER 77 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG----------------CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------------CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 4566777888899999999999999999853 1223 67888999999999999999999999
Q ss_pred HHHcCCC-C-CHhhHHHHHHHHHH--------cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 048235 83 LKQQGQK-P-SATTYGLVMEVMLA--------CGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDM 152 (455)
Q Consensus 83 m~~~~~~-p-~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 152 (455)
..+..+. | ....+..+..++.. .|+++.|...|+++....+.+......+.......+. .
T Consensus 78 ~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~----------~ 147 (261)
T 3qky_A 78 FIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK----------L 147 (261)
T ss_dssp HHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH----------H
T ss_pred HHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH----------H
Confidence 9987432 2 24556677778888 9999999999999998776554444332111000000 0
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHhc----------CCHHHHHHHHH
Q 048235 153 ERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKP--LVVSYTGLIQACLDS----------GNIQNAAYIFN 220 (455)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~----------~~~~~a~~~~~ 220 (455)
...+..+..+|...|++++|...|+++.+..+.. ....+..+..+|... |++++|...|+
T Consensus 148 --------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~ 219 (261)
T 3qky_A 148 --------ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYE 219 (261)
T ss_dssp --------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHH
Confidence 0113334555555666666666666555543221 233444555555544 55566666666
Q ss_pred HHHhcC
Q 048235 221 QMKNFC 226 (455)
Q Consensus 221 ~~~~~~ 226 (455)
.+.+..
T Consensus 220 ~~~~~~ 225 (261)
T 3qky_A 220 RLLQIF 225 (261)
T ss_dssp HHHHHC
T ss_pred HHHHHC
Confidence 655443
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.15 E-value=3.9e-09 Score=88.45 Aligned_cols=57 Identities=12% Similarity=0.226 Sum_probs=30.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048235 202 LIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258 (455)
Q Consensus 202 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 258 (455)
+..+|.+.|++++|...|++..+..|.+...+..+..+|...|++++|...|++.++
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555555555444444555555555555555555555555555555
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.12 E-value=7.6e-09 Score=86.66 Aligned_cols=176 Identities=10% Similarity=0.032 Sum_probs=130.6
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH----------------HHHHHHHcCChhHHHHHHHHHH
Q 048235 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGL----------------VMEVMLACGKYNLVYEFFRKVQ 119 (455)
Q Consensus 56 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~ 119 (455)
++..+-.....+...|++++|...|++..+..+. +...+.. +..++.+.|++++|...|++..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555666788999999999999999986433 4555666 7888999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCcHH
Q 048235 120 KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK--CEEALMQMDKICKVANKPLVV 197 (455)
Q Consensus 120 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~ 197 (455)
...+.+..++..+..++...|++++|+..|++..+.+ +.+..++..+..+|...|+ ...+...+..... ..|...
T Consensus 82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 8888899999999999999999999999999998875 3457778888888766554 3344455544432 233333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 048235 198 SYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIM 236 (455)
Q Consensus 198 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 236 (455)
.+.....++...|++++|...|++..+ ..|+......+
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~-l~P~~~~~~~l 196 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVIL-RFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTT-TSCCHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCHHHHHHH
Confidence 444556677778999999999999876 34665544443
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.10 E-value=3.6e-09 Score=105.24 Aligned_cols=182 Identities=14% Similarity=0.084 Sum_probs=148.6
Q ss_pred HhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 048235 18 GQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGL 97 (455)
Q Consensus 18 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 97 (455)
...|++++|++.|++..... ...-....+.+...|..+...+...|++++|+..|++..+.+.. +...+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~--------~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~ 472 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGA--------LDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWY 472 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhc--------ccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHH
Confidence 77899999999999987100 00000112456788999999999999999999999999987544 7788888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048235 98 VMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177 (455)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 177 (455)
+..++...|++++|...|++.....+.+...|..+..+|.+.|++++ +..|++..+.+ +.+...+..+..++...|++
T Consensus 473 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 473 RAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999888889999999999999999999 99999999875 34577888899999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 048235 178 EEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211 (455)
Q Consensus 178 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 211 (455)
++|...|++..+.... +...+..+..++...++
T Consensus 551 ~~A~~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 551 VGAVRTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHHHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 9999999998876533 46677777777766554
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.10 E-value=2.9e-07 Score=81.14 Aligned_cols=223 Identities=7% Similarity=-0.002 Sum_probs=180.6
Q ss_pred HhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHhhH
Q 048235 18 GQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRK--QWEGAFWVLQQLKQQGQKPSATTY 95 (455)
Q Consensus 18 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~ 95 (455)
.+....++|+++++.+... .+-+..+||.--..+...+ ++++++..++.+....++ +..+|
T Consensus 44 ~~~e~s~~aL~~t~~~L~~----------------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW 106 (306)
T 3dra_A 44 KAEEYSERALHITELGINE----------------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIW 106 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHH
T ss_pred HcCCCCHHHHHHHHHHHHH----------------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHH
Confidence 3344457899999999853 2556788999888998888 999999999999998655 55666
Q ss_pred HHHHHHH----HHc---CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCHHHHHH
Q 048235 96 GLVMEVM----LAC---GKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTD--EAVSAVEDMERRGIVGSAALYYD 166 (455)
Q Consensus 96 ~~l~~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~~~~~~~~ 166 (455)
+.--.++ ... +++++++.+++++....+.+..+|+.-.-++.+.|.++ ++++.++++.+.+ .-+...|+.
T Consensus 107 ~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~ 185 (306)
T 3dra_A 107 NYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSH 185 (306)
T ss_dssp HHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 6554444 455 78999999999999998999999999988888999988 9999999999986 346667776
Q ss_pred HHHHHHhcCC------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhc---CCCCHHHHHHH
Q 048235 167 LARCLCSAGK------CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQN-AAYIFNQMKNF---CSPNLVTCNIM 236 (455)
Q Consensus 167 l~~~~~~~g~------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~---~~~~~~~~~~l 236 (455)
-...+...++ ++++++.+..+....+. |...|+-+...+.+.|+... +..+..++... .+.+...+..+
T Consensus 186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l 264 (306)
T 3dra_A 186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETL 264 (306)
T ss_dssp HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHH
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence 6666667776 89999999999988765 88999988888888888444 55566665432 25678899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhc
Q 048235 237 VKAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 237 i~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
..+|.+.|+.++|.++++.+.+.
T Consensus 265 a~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 265 AKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHccCCHHHHHHHHHHHHhc
Confidence 99999999999999999999863
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.07 E-value=2.5e-09 Score=106.35 Aligned_cols=153 Identities=12% Similarity=0.065 Sum_probs=81.8
Q ss_pred HHcCChhHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048235 103 LACGKYNLVYEFFRKVQ--------KSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA 174 (455)
Q Consensus 103 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 174 (455)
...|++++|.+.+++.. ...+.+...+..+..++...|++++|+..|++..+.+ +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 44555555555555555 3333445555555555555555555555555555542 22344455555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 048235 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQ 254 (455)
Q Consensus 175 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 254 (455)
|++++|...|++..+.... +...+..+..++.+.|++++ .+.|++..+..+.+...|..+..++...|++++|.+.|+
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555554322 34445555555555555555 555555554444555555555555555555555555555
Q ss_pred HHHh
Q 048235 255 EMAE 258 (455)
Q Consensus 255 ~m~~ 258 (455)
++.+
T Consensus 559 ~al~ 562 (681)
T 2pzi_A 559 EVPP 562 (681)
T ss_dssp TSCT
T ss_pred hhcc
Confidence 5554
No 100
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.05 E-value=1.8e-08 Score=89.99 Aligned_cols=189 Identities=8% Similarity=-0.034 Sum_probs=117.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC---CC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC--CHHHHHHHHH
Q 048235 170 CLCSAGKCEEALMQMDKICKVAN---KP--LVVSYTGLIQACLDSGNIQNAAYIFNQMKNF----CSP--NLVTCNIMVK 238 (455)
Q Consensus 170 ~~~~~g~~~~a~~~~~~m~~~~~---~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~li~ 238 (455)
.|...|++++|...+.+...... .+ -..+|+.+...|...|++++|...|++..+. ..+ -..++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455566666555555433210 11 1345666677777777777777777766432 111 1346777788
Q ss_pred HHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-H
Q 048235 239 AYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHH----GLHFN-A 312 (455)
Q Consensus 239 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~ 312 (455)
.|.. |++++|+..|++.++.... .+..+ ...++..+...|...|++++|+..|++..+. +..+. .
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~--------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFEN--------EERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHh--------CCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 8877 9999999999988764300 00000 1467888889999999999999999998872 22121 1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHH---HHHhhccchHHHHH
Q 048235 313 KRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERF---CNRLENKDYGSAIS 368 (455)
Q Consensus 313 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~A~~ 368 (455)
..+..+...+...|++++|...|++.. ..+..+.......+ ...++.|+.+.+.+
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~~~~d~~~~~~ 253 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAYDEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHHHhcCHHHHHH
Confidence 255556666778899999999999988 66554432211112 22236677666666
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.04 E-value=4.4e-08 Score=83.06 Aligned_cols=203 Identities=9% Similarity=0.014 Sum_probs=102.2
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHH
Q 048235 92 ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPN---ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA--ALYYD 166 (455)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~ 166 (455)
...+..+...+.+.|++++|...|+++....+.+ ..++..+..+|.+.|++++|+..|+++.+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3344455566777788888888888777655422 356667777777888888888888877765422111 23333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh
Q 048235 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLF 246 (455)
Q Consensus 167 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 246 (455)
+..++...+.. .+ ..|..+...+...|++++|...|+++.+..|.+...+.....
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~-------- 138 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKR-------- 138 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHH--------
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHH--------
Confidence 44444332210 00 011122233344567777777777776654444433322111
Q ss_pred hHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHH
Q 048235 247 EEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN----AKRHLRMILDA 322 (455)
Q Consensus 247 ~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~ 322 (455)
...+... .......+...|.+.|++++|...|+++++.. |+ ...+..+..++
T Consensus 139 ------l~~~~~~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~ 194 (225)
T 2yhc_A 139 ------LVFLKDR----------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAY 194 (225)
T ss_dssp ------HHHHHHH----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHH
T ss_pred ------HHHHHHH----------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHH
Confidence 0000000 00111234445556666666666666666521 22 13455555556
Q ss_pred HhcCChHHHHHHHHHHhhcCC
Q 048235 323 SRAGKVELLEITWEHLARADR 343 (455)
Q Consensus 323 ~~~g~~~~a~~~~~~~~~~~~ 343 (455)
.+.|+.++|.+.++.+...++
T Consensus 195 ~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 195 RQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHCCS
T ss_pred HHcCCcHHHHHHHHHHHhhCC
Confidence 666666666666666555443
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.04 E-value=6.2e-07 Score=79.00 Aligned_cols=222 Identities=9% Similarity=0.023 Sum_probs=139.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCCCHHHHHHHHHHH----Hhc---CC
Q 048235 71 KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG--KYNLVYEFFRKVQKSYIPNALAYKVLVNTL----WRE---GK 141 (455)
Q Consensus 71 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~ 141 (455)
...++|+.+++.++..++. +...|+.--.++...+ ++++++.+++.+....+.+..+|+.--..+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 3346788888888876443 4555666556666677 788888888888777776777776655444 444 67
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC------HH
Q 048235 142 TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE--EALMQMDKICKVANKPLVVSYTGLIQACLDSGN------IQ 213 (455)
Q Consensus 142 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~------~~ 213 (455)
+++++.+++++.+.+ +-+..+|+.-...+...|+++ ++++.+.++.+..+. |...|+.-...+.+.+. ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 777777777777764 335555665555556666666 777777777776654 56666655555555554 66
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCC
Q 048235 214 NAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEE-AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292 (455)
Q Consensus 214 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 292 (455)
++++.++.+....+.|...|+-+-..+.+.|+... +..+..++.+.+. ....+...+..+...|.+.|+
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~----------~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK----------DQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG----------TEESCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC----------CCCCCHHHHHHHHHHHHccCC
Confidence 66666666666666666777666666666665433 3334444433210 012355666666666666666
Q ss_pred HHHHHHHHHHHHH
Q 048235 293 WDDLELVYKRMLH 305 (455)
Q Consensus 293 ~~~a~~~~~~m~~ 305 (455)
.++|.++++.+.+
T Consensus 274 ~~~A~~~~~~l~~ 286 (306)
T 3dra_A 274 YNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6667766666654
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.04 E-value=1e-08 Score=90.60 Aligned_cols=167 Identities=8% Similarity=-0.030 Sum_probs=139.2
Q ss_pred CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HH
Q 048235 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYY-DL 167 (455)
Q Consensus 89 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~l 167 (455)
+.+...+..+...+.+.|+++.|...|+++....+.+..++..+..++.+.|++++|...+++..... |+..... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 33556677778888999999999999999999888899999999999999999999999999887654 4543222 23
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhcCC
Q 048235 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPN--LVTCNIMVKAYLEHGL 245 (455)
Q Consensus 168 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~ 245 (455)
...+...++.++|...+++.....+. +...+..+...+...|++++|...|+++.+..+.+ ...+..++..|...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 33466778888899999998887643 78889999999999999999999999998765544 7889999999999999
Q ss_pred hhHHHHHHHHHHh
Q 048235 246 FEEAMKLFQEMAE 258 (455)
Q Consensus 246 ~~~a~~~~~~m~~ 258 (455)
.++|...|++.+.
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999988764
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.04 E-value=2.2e-08 Score=88.37 Aligned_cols=167 Identities=16% Similarity=0.029 Sum_probs=121.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 048235 123 IPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGL 202 (455)
Q Consensus 123 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 202 (455)
+.+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++++...... ........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHHH
Confidence 4455667777777888888888888888887764 335666777888888888888888888877665432 22222233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCc---HHH
Q 048235 203 IQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD---IYT 279 (455)
Q Consensus 203 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~---~~~ 279 (455)
...+...++.+.|...+++.....|.+...+..+...+...|++++|...|.++++.. |+ ...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--------------p~~~~~~a 257 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD--------------LTAADGQT 257 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTGGGGHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--------------cccccchH
Confidence 3345666777778888887777677778888888888888888888888888888754 42 567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 280 FNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 280 ~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
+..++..+...|+.++|...+++...
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 77788888888888888777776543
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.04 E-value=3e-09 Score=83.93 Aligned_cols=145 Identities=10% Similarity=0.021 Sum_probs=101.3
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh
Q 048235 14 AVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSAT 93 (455)
Q Consensus 14 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 93 (455)
...+...|++++|++.++..... .+.+...+-.+...|.+.|++++|.+.|++..+.... +..
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~----------------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~ 66 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS----------------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPK 66 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS----------------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHcChHHHHHHHHHHhccc----------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH
Confidence 34455667888888888887642 1334556667778888888888888888888876544 677
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHH
Q 048235 94 TYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSA-VEDMERRGIVGSAALYYDLARCLC 172 (455)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~~~~~~~~~~~~l~~~~~ 172 (455)
+|..+..++.+.|+++.|...|++.....+.+..+|..+..+|.+.|++++|.+. +++..+.. +-++.+|......+.
T Consensus 67 a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 67 AHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 7888888888888888888888888777777778888888888888887766554 46666653 234556665555555
Q ss_pred hcCC
Q 048235 173 SAGK 176 (455)
Q Consensus 173 ~~g~ 176 (455)
..|+
T Consensus 146 ~~G~ 149 (150)
T 4ga2_A 146 CEGE 149 (150)
T ss_dssp TCCC
T ss_pred HhCc
Confidence 5543
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.03 E-value=4.7e-08 Score=82.89 Aligned_cols=186 Identities=12% Similarity=-0.005 Sum_probs=128.1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHH---HHH
Q 048235 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKP--SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNAL---AYK 130 (455)
Q Consensus 56 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 130 (455)
+...+..+...+.+.|++++|...|+++.+..+.. ....+..+..++.+.|+++.|...|+++....+.+.. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 45566777888999999999999999999864431 1356777888999999999999999999887764432 555
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048235 131 VLVNTLWR------------------EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVAN 192 (455)
Q Consensus 131 ~li~~~~~------------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 192 (455)
.+..++.. .|++++|+..|+++.+.... +.......... + .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----~------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----V------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----H------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----H------HHHHHH-----
Confidence 55566554 35566666666666554311 11111111000 0 000000
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 193 KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNL---VTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 193 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
......+...|.+.|+++.|...|+.+.+..|.+. ..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01113466778899999999999999987655554 568888999999999999999999988865
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.02 E-value=2e-09 Score=84.95 Aligned_cols=139 Identities=5% Similarity=-0.094 Sum_probs=73.1
Q ss_pred HcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048235 104 ACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQ 183 (455)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 183 (455)
..|++++|+..+.......+.+...+..+...|.+.|++++|++.|++..+.+ +-+..+|..+..+|...|++++|...
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 34455555555555444332333444455555556666666666666555543 22345555555566666666666666
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHhcC
Q 048235 184 MDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI-FNQMKNFCSPNLVTCNIMVKAYLEHG 244 (455)
Q Consensus 184 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~li~~~~~~~ 244 (455)
|++..+..+. +..++..+...|.+.|++++|.+. +++..+..|.+..+|......+...|
T Consensus 88 ~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 88 YRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 6655554422 455555566666666665544433 35554444555555555555444444
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.01 E-value=4.9e-09 Score=85.22 Aligned_cols=161 Identities=14% Similarity=0.075 Sum_probs=96.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048235 10 YRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK 89 (455)
Q Consensus 10 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 89 (455)
+......+.+.|++++|+..|++.... .+.+...+..+...+...|++++|...|++......
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p- 71 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE----------------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ- 71 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH----------------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH----------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-
Confidence 445566677777777777777776532 244566777777777777777777777777655432
Q ss_pred CCHhhHHHHHHH-HHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 048235 90 PSATTYGLVMEV-MLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG-SAALYYDL 167 (455)
Q Consensus 90 p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~l 167 (455)
+...+..+... +...+....+...+++.....+.+...+..+..++...|++++|...|+++.+....+ +...+..+
T Consensus 72 -~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l 150 (176)
T 2r5s_A 72 -DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTF 150 (176)
T ss_dssp -CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHH
T ss_pred -ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHH
Confidence 33322222111 1122233345666666666655566666667777777777777777777666654322 23455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 048235 168 ARCLCSAGKCEEALMQMDKIC 188 (455)
Q Consensus 168 ~~~~~~~g~~~~a~~~~~~m~ 188 (455)
...+...|+.++|...|++..
T Consensus 151 ~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 151 MDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHH
Confidence 666666666666666665543
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=1.9e-08 Score=98.12 Aligned_cols=161 Identities=9% Similarity=0.008 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 048235 71 KQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVE 150 (455)
Q Consensus 71 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 150 (455)
|++++|...|++..+.... +...+..+...+.+.|++++|.+.|++.....+.+..++..+..+|...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5566666666666554322 455555666666666666666666666665555556666666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCC
Q 048235 151 DMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS---GNIQNAAYIFNQMKNFCS 227 (455)
Q Consensus 151 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~ 227 (455)
+..+.. +.+...+..+..+|...|++++|.+.+++..+.... +...+..+...+... |++++|.+.+++..+..+
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 665553 223455555666666666666666666666555422 455555566666666 666666666666555444
Q ss_pred CCHHHHH
Q 048235 228 PNLVTCN 234 (455)
Q Consensus 228 ~~~~~~~ 234 (455)
.+...|.
T Consensus 160 ~~~~~~~ 166 (568)
T 2vsy_A 160 GAVEPFA 166 (568)
T ss_dssp CCSCHHH
T ss_pred cccChHH
Confidence 4433333
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.00 E-value=7.8e-09 Score=84.02 Aligned_cols=43 Identities=19% Similarity=0.122 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048235 216 AYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258 (455)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 258 (455)
...+++..+..|.+...+..+..++...|++++|...|+++.+
T Consensus 94 ~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 136 (176)
T 2r5s_A 94 LKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK 136 (176)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3333333333333344444444444444444444444444444
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.99 E-value=1.9e-08 Score=98.13 Aligned_cols=138 Identities=9% Similarity=-0.058 Sum_probs=116.3
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 048235 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLV 133 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 133 (455)
+.+...|..+...+...|++++|.+.|++..+.... +...+..+..++...|++++|.+.+++.....+.+...+..+.
T Consensus 20 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 98 (568)
T 2vsy_A 20 PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLG 98 (568)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 345778888899999999999999999998886433 6778888888899999999999999998888777888999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCC
Q 048235 134 NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA---GKCEEALMQMDKICKVANK 193 (455)
Q Consensus 134 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~~~~ 193 (455)
.+|.+.|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.+++..+.+..
T Consensus 99 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 99 HALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 99999999999999999988875 34567778888888888 9999999999998887643
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=1.5e-07 Score=78.95 Aligned_cols=174 Identities=11% Similarity=-0.010 Sum_probs=101.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHH
Q 048235 111 VYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG----KCEEALMQMDK 186 (455)
Q Consensus 111 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~ 186 (455)
|.+.|++..+. .+..++..|...|...+++++|+..|++..+.| ++..+..|...|.. + ++++|...|++
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 44555555443 355666666666666666666666666666654 34445555555555 4 66666666666
Q ss_pred HHHcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHh----cCChhHHHHHHHHH
Q 048235 187 ICKVANKPLVVSYTGLIQACLD----SGNIQNAAYIFNQMKNFCSP--NLVTCNIMVKAYLE----HGLFEEAMKLFQEM 256 (455)
Q Consensus 187 m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~----~~~~~~a~~~~~~m 256 (455)
..+.| +...+..|...|.. .+++++|...|++..+..+. +...+..|...|.. .+++++|..+|++.
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 65554 44555556666655 56666666666666542221 15566666666666 56677777777776
Q ss_pred HhcccccchhhccCCCCCCcHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHcC
Q 048235 257 AEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE-K-----RWDDLELVYKRMLHHG 307 (455)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-~-----~~~~a~~~~~~m~~~~ 307 (455)
.+.+ .+...+..|...|... | +.++|..+|++..+.|
T Consensus 156 ~~~~--------------~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 156 SSLS--------------RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHTS--------------CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHcC--------------CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6642 2333455555555432 2 6667777776666655
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.96 E-value=1.5e-08 Score=90.51 Aligned_cols=229 Identities=10% Similarity=-0.012 Sum_probs=153.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 048235 70 RKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAV 149 (455)
Q Consensus 70 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 149 (455)
.|++++|.+++++..+.... . + +...++++.|...|.+. ...|...|++++|...|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~------~---~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S------F---MKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C------S---SSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c------c---cCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 56788888888887764211 1 0 11146777777777665 34677788888888888
Q ss_pred HHHHHCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCc--HHHHHHHHHHHHhcCCHHHHHHHH
Q 048235 150 EDMERRG----IVG-SAALYYDLARCLCSAGKCEEALMQMDKICKVA---NKPL--VVSYTGLIQACLDSGNIQNAAYIF 219 (455)
Q Consensus 150 ~~m~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~~~--~~~~~~li~~~~~~~~~~~a~~~~ 219 (455)
.+..+.. -.. -..+|+.+..+|...|++++|...+++..+.. ..+. ..++..+...|.. |++++|+..|
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 8776531 111 13467778888888899999988888765431 1121 4567788888888 9999999999
Q ss_pred HHHHhcCCC------CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCc-HHHHHHHHHHHHHcCC
Q 048235 220 NQMKNFCSP------NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD-IYTFNTMLDACAAEKR 292 (455)
Q Consensus 220 ~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~ 292 (455)
++.....+. ...++..+...|...|++++|+..|++....... .+..+. ...+..+...+...|+
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~~~~~~~~g~~~~~~g~ 210 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE--------MENYPTCYKKCIAQVLVQLHRAD 210 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------cCChhHHHHHHHHHHHHHHHcCC
Confidence 987653111 1467888999999999999999999999874300 001111 2366677778888899
Q ss_pred HHHHHHHHHHHHHcCCC-CCH---HHHHHHHHHHHhcCChHHHHH
Q 048235 293 WDDLELVYKRMLHHGLH-FNA---KRHLRMILDASRAGKVELLEI 333 (455)
Q Consensus 293 ~~~a~~~~~~m~~~~~~-p~~---~~~~~ll~~~~~~g~~~~a~~ 333 (455)
+++|...|++.. .... ++. .....++.++ ..|+.+.+..
T Consensus 211 ~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 211 YVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999999988 3211 111 2333444444 5677666555
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.95 E-value=1.6e-07 Score=78.68 Aligned_cols=175 Identities=12% Similarity=-0.004 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC----CHHHHHHH
Q 048235 143 DEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG----NIQNAAYI 218 (455)
Q Consensus 143 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~ 218 (455)
.+|++.|++..+.| ++..+..+...|...+++++|...|++..+.| +...+..|...|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35778888888775 66778888999999999999999999998876 56777788888887 6 89999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcccccchhhccCCCCCCc---HHHHHHHHHHHHH--
Q 048235 219 FNQMKNFCSPNLVTCNIMVKAYLE----HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD---IYTFNTMLDACAA-- 289 (455)
Q Consensus 219 ~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~---~~~~~~li~~~~~-- 289 (455)
|++..+ ..+...+..|...|.. .+++++|+++|++..+.+ |+ ...+..|...|..
T Consensus 76 ~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--------------~~~~~~~a~~~Lg~~y~~g~ 139 (212)
T 3rjv_A 76 AEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--------------ESDAAVDAQMLLGLIYASGV 139 (212)
T ss_dssp HHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--------------TSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--------------CCcchHHHHHHHHHHHHcCC
Confidence 999865 3567788888888887 889999999999999876 43 7788888888888
Q ss_pred --cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHhhcC
Q 048235 290 --EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRA-G-----KVELLEITWEHLARAD 342 (455)
Q Consensus 290 --~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~ 342 (455)
.+++++|..+|++..+.+ .+...+..+-..|... | ++++|...|+...+.+
T Consensus 140 g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 140 HGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp SSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 889999999999998862 2344666666666543 3 8999999999988776
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.89 E-value=1.1e-05 Score=76.55 Aligned_cols=365 Identities=8% Similarity=-0.066 Sum_probs=214.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHc
Q 048235 8 VAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQ-WEGAFWVLQQLKQQ 86 (455)
Q Consensus 8 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~ 86 (455)
..|...+..+-. |+++.+.++|+..... .|++..|...+....+.+. .+....+|+.....
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~-----------------~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~ 77 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKK-----------------SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQ 77 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTT-----------------CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhcc-----------------CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 456667776665 8899999999999852 5799999999998887764 45677788887764
Q ss_pred -CCCC-CHhhHHHHHHHHH----HcCChhHHHHHHHHHHhcCCCCH-HHHHHHHHHHHh-------------cCChHHHH
Q 048235 87 -GQKP-SATTYGLVMEVML----ACGKYNLVYEFFRKVQKSYIPNA-LAYKVLVNTLWR-------------EGKTDEAV 146 (455)
Q Consensus 87 -~~~p-~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~-------------~g~~~~a~ 146 (455)
|..| +...|...+..+. ..++.+.+..+|++.......+. ..|......-.. .+.+..|.
T Consensus 78 vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar 157 (493)
T 2uy1_A 78 FENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSF 157 (493)
T ss_dssp STTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHH
Confidence 5433 6677777766543 34568889999999987422222 223222221111 12233344
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc--CC-----HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048235 147 SAVEDMERRGIVGSAALYYDLARCLCSA--GK-----CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219 (455)
Q Consensus 147 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~--g~-----~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 219 (455)
.+++++...-...+...|...+..-... +- .+.+..+|+++....+ .+...|...+..+.+.|+++.|..++
T Consensus 158 ~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~ 236 (493)
T 2uy1_A 158 QRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVV 236 (493)
T ss_dssp HHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4444443210011233454444432221 11 3456788888887643 35778888888888999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCC--CcHHHHHHHHHHHHHcCCHHHHH
Q 048235 220 NQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVI--PDIYTFNTMLDACAAEKRWDDLE 297 (455)
Q Consensus 220 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~--p~~~~~~~li~~~~~~~~~~~a~ 297 (455)
++.... |.+...|.. |+...+.++. ++.+.+.-.. .......... .....|...+..+.+.++.+.|.
T Consensus 237 erAi~~-P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~--~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR 306 (493)
T 2uy1_A 237 ERGIEM-SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSM--GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFR 306 (493)
T ss_dssp HHHHHH-CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC------------CHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHhC-CCcHHHHHH----HHhhcchhHH---HHHHHHHHHh--hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHH
Confidence 999877 555444432 3322222222 3333221000 0000000001 12356777788777888899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhhhcCCC
Q 048235 298 LVYKRMLHHGLHFNAKRHLRMILDAS-RAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLVSHPVS 376 (455)
Q Consensus 298 ~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 376 (455)
.+|+++ ... ..+...|......-. ..++.+.|..+|+...+..+..++ .+..++......|+.+.|..+++....
T Consensus 307 ~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~-~~~~yid~e~~~~~~~~aR~l~er~~k- 382 (493)
T 2uy1_A 307 KLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTL-LKEEFFLFLLRIGDEENARALFKRLEK- 382 (493)
T ss_dssp HHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHTCHHHHHHHHHHSCC-
T ss_pred HHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 999999 421 124444443222222 234799999999999987765443 333444434588999999999998843
Q ss_pred CCccccHHHHHHHHhhhcccCCcchHHHHHHHhc
Q 048235 377 GSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEAS 410 (455)
Q Consensus 377 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 410 (455)
+...|...+..-...|..+.+.+.+.++.
T Consensus 383 -----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 383 -----TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp -----BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34888888873223333223333344444
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.88 E-value=1.8e-07 Score=78.39 Aligned_cols=130 Identities=10% Similarity=0.024 Sum_probs=99.5
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048235 7 TVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ 86 (455)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 86 (455)
...+..+...+...|++++|++.|++.. .|+..+|..+...+...|++++|...|++..+.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~-------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 66 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ-------------------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR 66 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS-------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc-------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445566777778888888888888765 457778888888888888888888888888876
Q ss_pred CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHhcCChHHHHHHHH
Q 048235 87 GQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNA----------------LAYKVLVNTLWREGKTDEAVSAVE 150 (455)
Q Consensus 87 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~a~~~~~ 150 (455)
... +...+..+..++...|++++|...|++.....+.+. .++..+..+|...|++++|...|+
T Consensus 67 ~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 67 DKH-LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Ccc-chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 433 667777788888888888888888888877554433 677777888888888888888888
Q ss_pred HHHHCC
Q 048235 151 DMERRG 156 (455)
Q Consensus 151 ~m~~~~ 156 (455)
+..+..
T Consensus 146 ~al~~~ 151 (213)
T 1hh8_A 146 LATSMK 151 (213)
T ss_dssp HHHTTC
T ss_pred HHHHcC
Confidence 877654
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.86 E-value=3.8e-06 Score=74.80 Aligned_cols=231 Identities=9% Similarity=0.027 Sum_probs=176.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCC
Q 048235 10 YRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRK-QWEGAFWVLQQLKQQGQ 88 (455)
Q Consensus 10 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~ 88 (455)
++.+-....+.+..++|+++++.+... .+-+..+|+.--..+...+ .+++++.+++.+.....
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~----------------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP 120 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM----------------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL 120 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh----------------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC
Confidence 343444445556678899999999853 2556788999888888888 59999999999999876
Q ss_pred CCCHhhHHHHHHHHHHc-C-ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCC
Q 048235 89 KPSATTYGLVMEVMLAC-G-KYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTD--------EAVSAVEDMERRGIV 158 (455)
Q Consensus 89 ~p~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~~~~ 158 (455)
+ +..+|+.-..++.+. + ++++++++++++....+.+..+|+.-.-++.+.|.++ ++++.++++.+.+ +
T Consensus 121 K-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p 198 (349)
T 3q7a_A 121 K-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-G 198 (349)
T ss_dssp C-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-T
T ss_pred C-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-C
Confidence 6 778888777777776 7 8999999999999988889999988777777766666 9999999999986 4
Q ss_pred CCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH-------------------
Q 048235 159 GSAALYYDLARCLCSAGK-------CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNI------------------- 212 (455)
Q Consensus 159 ~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~------------------- 212 (455)
-+...|+.....+.+.++ ++++++.+.++....+. |...|+-+-..+.+.|+.
T Consensus 199 ~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (349)
T 3q7a_A 199 RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPD 277 (349)
T ss_dssp TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC------
T ss_pred CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccccccccccccccccccc
Confidence 467778877777777776 78899999998887655 788888777777766654
Q ss_pred -HHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048235 213 -QNAAYIFNQMKNFC------SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 213 -~~a~~~~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
.........+.... .+.......++..|...|+.++|.++++.+.+.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 278 IETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp --------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22222222222211 467888999999999999999999999998754
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.86 E-value=5.5e-07 Score=79.66 Aligned_cols=172 Identities=13% Similarity=0.071 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---Cc--
Q 048235 126 ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSA-----ALYYDLARCLCSAGKCEEALMQMDKICKVANK---PL-- 195 (455)
Q Consensus 126 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~---~~-- 195 (455)
...+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+++....... +.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345556777888999999999999988776432211 22344666778889999999999988754221 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhc
Q 048235 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKN---FCSPN----LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYD 268 (455)
Q Consensus 196 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 268 (455)
..+++.+...|...|++++|...|++..+ ..+.+ ..++..+..+|...|++++|...+++.++...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~------- 227 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC------- 227 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH-------
Confidence 45889999999999999999999998863 23222 25888999999999999999999999876430
Q ss_pred cCCCCCC-cHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 048235 269 KKGLVIP-DIYTFNTMLDACAAEKRWDDL-ELVYKRMLH 305 (455)
Q Consensus 269 ~~~~~~p-~~~~~~~li~~~~~~~~~~~a-~~~~~~m~~ 305 (455)
..+... -..+|..+...|...|+.++| ...+++...
T Consensus 228 -~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 228 -RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp -HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 000111 267888899999999999999 777877664
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.85 E-value=1.1e-06 Score=77.83 Aligned_cols=198 Identities=7% Similarity=-0.007 Sum_probs=139.6
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh---HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHH--
Q 048235 53 LEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATT---YGLVMEVMLACGKYNLVYEFFRKVQKSYIPNAL-- 127 (455)
Q Consensus 53 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 127 (455)
..|+..+...+...+.-.- +.+.......+... +...+..+...|+++.|..++++.......+..
T Consensus 42 ~~~~~~~l~~i~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~ 112 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIPI---------IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ 112 (293)
T ss_dssp CCCCHHHHHHHHHHHTCCT---------HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCCHHHHHHHHHHhCcCH---------HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHH
Confidence 4677777776666554221 11112112222222 233366788999999999999998875442222
Q ss_pred ----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC
Q 048235 128 ----AYKVLVNTLWREGKTDEAVSAVEDMERRGIV-GS----AALYYDLARCLCSAGKCEEALMQMDKICKV-----ANK 193 (455)
Q Consensus 128 ----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~~~ 193 (455)
.+..+...+...|++++|+..+++..+.... ++ ..+++.+..+|...|++++|...++++.+. +..
T Consensus 113 ~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 192 (293)
T 3u3w_A 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccch
Confidence 3345667777788999999999999884322 22 336888999999999999999999998741 212
Q ss_pred Cc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC-CHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhc
Q 048235 194 PL-VVSYTGLIQACLDSGNIQNAAYIFNQMKNF-----CSP-NLVTCNIMVKAYLEHGL-FEEAMKLFQEMAED 259 (455)
Q Consensus 194 ~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~ 259 (455)
+. ..++..+...|.+.|++++|...+++..+. ..+ -..+|..+..+|...|+ +++|.+.|++....
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 22 447888999999999999999999987542 112 26788999999999995 69999999888653
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.83 E-value=3.3e-07 Score=76.70 Aligned_cols=133 Identities=13% Similarity=0.073 Sum_probs=109.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 048235 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTL 136 (455)
Q Consensus 57 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 136 (455)
...+..+...+...|++++|...|++. +.|+...+..+..++.+.|++++|...|++.....+.+..+|..+..+|
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 345566777888999999999999876 3668888899999999999999999999999888777888999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048235 137 WREGKTDEAVSAVEDMERRGIV--------------G-SAALYYDLARCLCSAGKCEEALMQMDKICKVANK 193 (455)
Q Consensus 137 ~~~g~~~~a~~~~~~m~~~~~~--------------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 193 (455)
...|++++|+..|++..+.... | ....+..+..+|...|++++|...++...+....
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 9999999999999998875321 1 1256777888888999999999999888876543
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.82 E-value=6.2e-06 Score=73.48 Aligned_cols=236 Identities=9% Similarity=0.039 Sum_probs=171.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcC-ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 048235 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACG-KYNLVYEFFRKVQKSYIPNALAYKVLVNTLWR 138 (455)
Q Consensus 60 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 138 (455)
++.+-......+..++|+++++++...+.. +...|+.--.++...+ .+++++.+++.+....+.+..+|+.-..++.+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 344444444556678999999999997655 6666777667777788 59999999999999988999999998888877
Q ss_pred c-C-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 048235 139 E-G-KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCE--------EALMQMDKICKVANKPLVVSYTGLIQACLD 208 (455)
Q Consensus 139 ~-g-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 208 (455)
. + ++++++++++++.+.+ +-+...|+.-...+.+.|.++ ++++.+.++.+..+. |...|+.....+.+
T Consensus 136 l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVS 213 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTT
T ss_pred hcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 7 7 8999999999998875 335666665444444445555 899999999998765 78888888888888
Q ss_pred cCC-------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh--------------------hHHHHHHHHHHhccc
Q 048235 209 SGN-------IQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLF--------------------EEAMKLFQEMAEDSN 261 (455)
Q Consensus 209 ~~~-------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--------------------~~a~~~~~~m~~~~~ 261 (455)
.++ ++++++.+++.....+-|...|+-+-..+.+.|.. ........++....
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 292 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP- 292 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C-
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc-
Confidence 776 68899999988888889999999877777776654 11222222221110
Q ss_pred ccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 262 HINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 262 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
...+...++...+..++..|...|+.++|.++++.+.+
T Consensus 293 ------~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 293 ------LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp ------CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 00001135677788888888888888888888888764
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.77 E-value=2.9e-07 Score=69.28 Aligned_cols=113 Identities=18% Similarity=0.193 Sum_probs=64.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 048235 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTL 136 (455)
Q Consensus 57 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 136 (455)
...|..+...+...|++++|.+.|+++.+... .+..++..+...+...|++++|..+|+++....+.+..++..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 44555566666666666666666666655432 24455555556666666666666666666555555556666666666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048235 137 WREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171 (455)
Q Consensus 137 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 171 (455)
...|++++|...++++.+.. +.+...+..+...+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 66666666666666665543 22333444444443
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.77 E-value=1.8e-06 Score=76.28 Aligned_cols=172 Identities=11% Similarity=0.030 Sum_probs=126.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC--HH
Q 048235 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPL-----VVSYTGLIQACLDSGNIQNAAYIFNQMKNFC----SPN--LV 231 (455)
Q Consensus 163 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~--~~ 231 (455)
.+...+..+...|++++|.+.+.+..+...... ...+..+...+...|++++|...+++..... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445567788899999999999998877543321 1234456677788899999999999886531 122 45
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Q 048235 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP--DIYTFNTMLDACAAEKRWDDLELVYKRMLHHG-- 307 (455)
Q Consensus 232 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-- 307 (455)
+++.+...|...|++++|...|++..+.... ....+ ...++..+...|...|++++|...+++..+..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~--------~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEA--------LHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------cCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999998842100 00111 22588889999999999999999999987621
Q ss_pred --CCCC-HHHHHHHHHHHHhcCChHHH-HHHHHHHhhcC
Q 048235 308 --LHFN-AKRHLRMILDASRAGKVELL-EITWEHLARAD 342 (455)
Q Consensus 308 --~~p~-~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~~ 342 (455)
.... ..+|..+...|.+.|++++| ...+++.....
T Consensus 229 ~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 1111 56778888889999999999 77788765433
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.77 E-value=7.3e-07 Score=71.08 Aligned_cols=128 Identities=10% Similarity=-0.016 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 048235 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLE 242 (455)
Q Consensus 163 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 242 (455)
.+..+...+...|++++|...+++..+.... +..++..+...+...|++++|...+++.....+.+...+..+..++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3445555666666666666666666655422 455666666666677777777777766665555566666677777777
Q ss_pred cCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHH--HHHHHHHHcCCHHHHHHHHHHHH
Q 048235 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN--TMLDACAAEKRWDDLELVYKRML 304 (455)
Q Consensus 243 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~ 304 (455)
.|++++|...|+++.+.. +.+...+. .....+...|++++|.+.+....
T Consensus 94 ~~~~~~A~~~~~~a~~~~-------------p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK-------------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS-------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-------------CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 777777777777776643 11333332 23333555666666666665543
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.76 E-value=3.7e-07 Score=72.82 Aligned_cols=129 Identities=13% Similarity=0.032 Sum_probs=77.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 048235 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTL 136 (455)
Q Consensus 57 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 136 (455)
...|..+...+...|++++|...|++..+.... +..++..+..++...|+++.|...+++.....+.+..++..+..++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345555666666666666666666666655322 4555666666666666666666666666665555666666666666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHH
Q 048235 137 WREGKTDEAVSAVEDMERRGIVGSAALYY--DLARCLCSAGKCEEALMQMDKI 187 (455)
Q Consensus 137 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~m 187 (455)
...|++++|...+++..+.. +.+...+. .++..+...|++++|...+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66777777777776666553 12233332 2333355566667766666654
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.76 E-value=4.5e-07 Score=68.85 Aligned_cols=99 Identities=10% Similarity=-0.007 Sum_probs=70.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 048235 57 IVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTL 136 (455)
Q Consensus 57 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 136 (455)
...|......|.+.|++++|++.|++..+.... +...|..+..++.+.|++++|+..|++.....+.+..+|..+..+|
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 456667777777777777777777777766433 5666777777777777777777777777766666777777777777
Q ss_pred HhcCChHHHHHHHHHHHHCC
Q 048235 137 WREGKTDEAVSAVEDMERRG 156 (455)
Q Consensus 137 ~~~g~~~~a~~~~~~m~~~~ 156 (455)
...|++++|++.|++..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHC
Confidence 77777777777777776654
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.76 E-value=3.1e-07 Score=81.26 Aligned_cols=170 Identities=11% Similarity=0.096 Sum_probs=113.4
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHh----hHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CC--
Q 048235 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ-KPSAT----TYGLVMEVMLACGKYNLVYEFFRKVQKSYI--PN-- 125 (455)
Q Consensus 55 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~-- 125 (455)
.....+...+..+...|++++|..++++..+... .|+.. .+..+...+...++++.|...|++...... .+
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 152 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence 3466666677777788888888888888777532 23321 233455566667788888888887765322 22
Q ss_pred --HHHHHHHHHHHHhcCChHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC
Q 048235 126 --ALAYKVLVNTLWREGKTDEAVSAVEDMER----R-GIVGS-AALYYDLARCLCSAGKCEEALMQMDKICKV----ANK 193 (455)
Q Consensus 126 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~ 193 (455)
..+++.+..+|...|++++|+..|++..+ . +..+. ..++..+..+|...|++++|...+++..+. +..
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~ 232 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence 23677888888888888888888887764 1 11112 346677888888888888888888776542 211
Q ss_pred Cc-HHHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 048235 194 PL-VVSYTGLIQACLDSGN-IQNAAYIFNQMKN 224 (455)
Q Consensus 194 ~~-~~~~~~li~~~~~~~~-~~~a~~~~~~~~~ 224 (455)
+. ..+|..+..+|.+.|+ +++|...|++...
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 22 5677788888888884 5888888777643
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.74 E-value=3.6e-07 Score=69.79 Aligned_cols=120 Identities=10% Similarity=0.043 Sum_probs=80.4
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 048235 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLV 133 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 133 (455)
+.+...|..+...+...|++++|...|++..+.... +...+..+..++...|++++|...+++.....+.+..++..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 445667777777777777777777777777665322 5666666777777777777777777777766666677777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048235 134 NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG 175 (455)
Q Consensus 134 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 175 (455)
.++...|++++|...|++..+... .+...+..+..++...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 777777777777777777766532 23344555555555444
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.74 E-value=6.6e-07 Score=67.27 Aligned_cols=116 Identities=20% Similarity=0.242 Sum_probs=99.7
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048235 92 ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCL 171 (455)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 171 (455)
...+..+...+...|+++.|.+.|+++....+.+..++..+..++...|++++|..+++++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 56788888899999999999999999988877788999999999999999999999999998874 44677888899999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 048235 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS 209 (455)
Q Consensus 172 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 209 (455)
...|++++|...++++.+.... +...+..+...+...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhc
Confidence 9999999999999999887643 566666666666543
No 130
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.74 E-value=4.1e-07 Score=69.05 Aligned_cols=95 Identities=12% Similarity=0.085 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcH
Q 048235 198 SYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDI 277 (455)
Q Consensus 198 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~ 277 (455)
.+......|.+.|++++|.+.|++..+..+.+...|..+..+|...|++++|+..|++.++.. +.+.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------------p~~~ 81 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-------------SKFI 81 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------TTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-------------hhhh
Confidence 344445555555555555555555544444455555555555555555555555555555432 1134
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 278 YTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 278 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
..|..+..+|...|++++|.+.|++..+
T Consensus 82 ~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 82 KGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455555555555555555555555554
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.72 E-value=4.7e-08 Score=88.37 Aligned_cols=152 Identities=14% Similarity=0.082 Sum_probs=122.3
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHH
Q 048235 106 GKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS--------------AALYYDLARCL 171 (455)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--------------~~~~~~l~~~~ 171 (455)
++++.|...++......+.+...+..+...|.+.|++++|+..|++..+...... ...|..+..+|
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555444333233567888888999999999999999999888753322 47888899999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHH-H
Q 048235 172 CSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEA-M 250 (455)
Q Consensus 172 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a-~ 250 (455)
.+.|++++|+..+++..+.... +...+..+..+|...|++++|...|++..+..+.+...+..+..++...|+.++| .
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987643 7888999999999999999999999999887788889999999999999999988 4
Q ss_pred HHHHHHHh
Q 048235 251 KLFQEMAE 258 (455)
Q Consensus 251 ~~~~~m~~ 258 (455)
.+|+.|..
T Consensus 286 ~~~~~~~~ 293 (336)
T 1p5q_A 286 KLYANMFE 293 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56777654
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.71 E-value=3.9e-07 Score=69.20 Aligned_cols=120 Identities=12% Similarity=-0.009 Sum_probs=76.0
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048235 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVN 134 (455)
Q Consensus 55 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 134 (455)
.+...+..+...+...|++++|...|++....... +...+..+...+...|+++.|...+++.....+.+...+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 34556666666666677777777777766665322 45566666666667777777777777666655556666666667
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048235 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGK 176 (455)
Q Consensus 135 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 176 (455)
++...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 7777777777777777666653 2344555556666655554
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.71 E-value=9.3e-07 Score=69.31 Aligned_cols=99 Identities=17% Similarity=0.083 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 048235 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240 (455)
Q Consensus 161 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 240 (455)
...+..+...+.+.|++++|...|++.....+. +...|..+..+|...|++++|...|++..+..|.+...|..+..+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 456777888889999999999999999887644 7888899999999999999999999999887788888999999999
Q ss_pred HhcCChhHHHHHHHHHHhcc
Q 048235 241 LEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 241 ~~~~~~~~a~~~~~~m~~~~ 260 (455)
...|++++|...|++.++..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999854
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.70 E-value=2.3e-07 Score=81.52 Aligned_cols=197 Identities=10% Similarity=-0.063 Sum_probs=138.1
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048235 55 PDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVN 134 (455)
Q Consensus 55 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 134 (455)
.+...+..+...+.+.|++++|...|++..+.... +...|..+..++.+.|++++|...+++.....+.+...+..+..
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 35678888999999999999999999999987543 78888999999999999999999999999888888999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH
Q 048235 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQN 214 (455)
Q Consensus 135 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 214 (455)
+|...|++++|...|++..+.+.. +...+...+....+ ..++. .+........+.+......+.. + ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 999999999999999998765311 00011111111111 11111 1222223333334444333332 2 3688899
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHhc
Q 048235 215 AAYIFNQMKNFCSPNLVTCNIMVKAYLEH-GLFEEAMKLFQEMAED 259 (455)
Q Consensus 215 a~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~ 259 (455)
|.+.++...+..+.+......+...+.+. +.+++|.++|.++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99888887765445555555555555554 6788899999887664
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.70 E-value=1.6e-07 Score=73.78 Aligned_cols=99 Identities=6% Similarity=-0.150 Sum_probs=59.8
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 048235 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNT 135 (455)
Q Consensus 56 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 135 (455)
+...+..+...+.+.|++++|...|++.....+. +...|..+..++...|++++|...|++.....|.+..+|..+..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 3445555566666666666666666666655333 455555566666666666666666666665555555666666666
Q ss_pred HHhcCChHHHHHHHHHHHHC
Q 048235 136 LWREGKTDEAVSAVEDMERR 155 (455)
Q Consensus 136 ~~~~g~~~~a~~~~~~m~~~ 155 (455)
|.+.|++++|+..|++..+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666554
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.70 E-value=6e-07 Score=74.37 Aligned_cols=155 Identities=11% Similarity=0.045 Sum_probs=76.7
Q ss_pred HcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHH
Q 048235 104 ACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERR----GIVG-SAALYYDLARCLCSAGKCE 178 (455)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~ 178 (455)
..|+++.|.+.++.+.........++..+...+...|++++|...+++..+. +..+ ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3445555555333332211123445555555555555555555555554431 1111 1234455555566666666
Q ss_pred HHHHHHHHHHHc----CCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHhcCCh
Q 048235 179 EALMQMDKICKV----ANKP--LVVSYTGLIQACLDSGNIQNAAYIFNQMKNF--CSPN----LVTCNIMVKAYLEHGLF 246 (455)
Q Consensus 179 ~a~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~li~~~~~~~~~ 246 (455)
+|...+++..+. +..+ ...++..+...+...|++++|...+++.... ...+ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666554432 1111 1334555666666666666666666655322 1111 12345566666677777
Q ss_pred hHHHHHHHHHHh
Q 048235 247 EEAMKLFQEMAE 258 (455)
Q Consensus 247 ~~a~~~~~~m~~ 258 (455)
++|.+.+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766654
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.70 E-value=5.5e-07 Score=68.73 Aligned_cols=121 Identities=12% Similarity=0.007 Sum_probs=102.9
Q ss_pred CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048235 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLA 168 (455)
Q Consensus 89 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 168 (455)
+.+...+..+...+...|+++.|...|++.....+.+..++..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 34567788888899999999999999999998877789999999999999999999999999998875 34677888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 048235 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN 211 (455)
Q Consensus 169 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 211 (455)
.++...|++++|...+++..+.... +...+..+..++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhcC
Confidence 9999999999999999999887533 45667777777766553
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.69 E-value=6e-07 Score=77.31 Aligned_cols=186 Identities=10% Similarity=-0.031 Sum_probs=104.2
Q ss_pred HcCChhHHHHHHHHHHhcCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCC----------------
Q 048235 104 ACGKYNLVYEFFRKVQKSYIPNALAYKVL-------VNTLWREGKTDEAVSAVEDMERRGIVGS---------------- 160 (455)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~~~~~~---------------- 160 (455)
..++...|.+.|.++....+.....|..+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46777777777777777766677777766 3455554445555444443332 1111
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HHH
Q 048235 161 ------AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPN--LVT 232 (455)
Q Consensus 161 ------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~ 232 (455)
......+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+.......|. ...
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 1223335555666777777777776665543 322244444556666677777777766443311111 224
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD--IYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 233 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
+..+..++...|++++|+..|++..... ..|. .........++.+.|+.++|..+|+++..
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~------------~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSP------------AGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTST------------TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCC------------CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5556666666677777777766665422 2132 23444555566666666666666666666
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.67 E-value=1.6e-07 Score=82.47 Aligned_cols=96 Identities=21% Similarity=0.113 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 048235 126 ALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA 205 (455)
Q Consensus 126 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 205 (455)
...+..+...+.+.|++++|+..|++..+.. +.+...+..+..+|...|++++|...+++..+.... +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3444445555555555555555555555442 223444555555555555555555555555544322 34455555555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 048235 206 CLDSGNIQNAAYIFNQMK 223 (455)
Q Consensus 206 ~~~~~~~~~a~~~~~~~~ 223 (455)
|...|++++|...|++..
T Consensus 82 ~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 555555555555555543
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.67 E-value=2.8e-07 Score=74.71 Aligned_cols=83 Identities=10% Similarity=0.085 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHhcCCh--hHHHH
Q 048235 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKA-YLEHGLF--EEAMK 251 (455)
Q Consensus 175 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~--~~a~~ 251 (455)
|++++|...++...+... .+...+..+...|...|++++|...|++..+..+.+...+..+..+ +...|++ ++|..
T Consensus 24 ~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ---CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred cCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 334444444444333321 1333444444444444444444444444433333334444444444 3344444 44444
Q ss_pred HHHHHHh
Q 048235 252 LFQEMAE 258 (455)
Q Consensus 252 ~~~~m~~ 258 (455)
.|+++.+
T Consensus 103 ~~~~al~ 109 (177)
T 2e2e_A 103 MIDKALA 109 (177)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.66 E-value=3.6e-07 Score=71.65 Aligned_cols=95 Identities=9% Similarity=-0.061 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-
Q 048235 197 VSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP- 275 (455)
Q Consensus 197 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p- 275 (455)
..+..+...+...|++++|...|+......+.+...|..+..+|...|++++|...|++..... |
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--------------p~ 87 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--------------IX 87 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------TT
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------------CC
Confidence 3344444455555555555555555544444455555555555555555555555555555432 2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 276 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
+...+..+..+|...|++++|...|++..+
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444455555555555555555555544
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.66 E-value=4.1e-07 Score=75.38 Aligned_cols=156 Identities=13% Similarity=0.072 Sum_probs=116.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhc------CCCCHHHHHHHHHHHHhcCC
Q 048235 68 VRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS------YIPNALAYKVLVNTLWREGK 141 (455)
Q Consensus 68 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~ 141 (455)
...|++++|.+.++.+.. .......++..+...+...|+++.|...+++.... .+....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 467999999996655543 22335778888889999999999999999987652 11345678888999999999
Q ss_pred hHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCc--HHHHHHHHHHHHhcC
Q 048235 142 TDEAVSAVEDMERR----GIVG--SAALYYDLARCLCSAGKCEEALMQMDKICKVA---NKPL--VVSYTGLIQACLDSG 210 (455)
Q Consensus 142 ~~~a~~~~~~m~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~~~--~~~~~~li~~~~~~~ 210 (455)
+++|...+++..+. +..+ ....+..+...+...|++++|...+++..... ..+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999987664 2111 24557778899999999999999999876431 1111 344678889999999
Q ss_pred CHHHHHHHHHHHHh
Q 048235 211 NIQNAAYIFNQMKN 224 (455)
Q Consensus 211 ~~~~a~~~~~~~~~ 224 (455)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988754
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.66 E-value=1.6e-06 Score=65.71 Aligned_cols=117 Identities=12% Similarity=-0.051 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048235 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241 (455)
Q Consensus 162 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 241 (455)
..+..+...+...|++++|...+++...... .+...+..+...+...|++++|...++......+.+...+..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 3444455555555666666666655555432 245555556666666666666666666655544455556666666666
Q ss_pred hcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCC
Q 048235 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKR 292 (455)
Q Consensus 242 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 292 (455)
..|++++|...|++..+.. +.+...+..+...+...|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-------------p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-------------PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-------------TTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcC-------------ccchHHHHHHHHHHHHHhc
Confidence 6666666666666666543 1244555555555555444
No 144
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.65 E-value=2.6e-05 Score=69.13 Aligned_cols=223 Identities=10% Similarity=-0.014 Sum_probs=135.6
Q ss_pred HcCChh-HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048235 104 ACGKYN-LVYEFFRKVQKSYIPNALAYKVLVNTLWREGK----------TDEAVSAVEDMERRGIVGSAALYYDLARCLC 172 (455)
Q Consensus 104 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 172 (455)
+.|.++ +|+.+++.+....|.+..+|+.--.++...+. +++++.+++.+...+ +-+..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 344443 45666666655555555555543333222222 456666666666654 234455555555555
Q ss_pred hcC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc------
Q 048235 173 SAG--KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN-IQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH------ 243 (455)
Q Consensus 173 ~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~------ 243 (455)
..+ .+++++.+++.+.+..++ |..+|+.-...+...|. ++++++.+..+.+..+.|...|+.....+...
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC--
T ss_pred ccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccc
Confidence 555 367777777777776644 66666666666666666 47777777777766777777777666555544
Q ss_pred --------CChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHc-----------CCHHHHHHHHHHH
Q 048235 244 --------GLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAE-----------KRWDDLELVYKRM 303 (455)
Q Consensus 244 --------~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m 303 (455)
+.++++++.+.+.+... | |...|+-+-..+.+. +.++++++.++++
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~--------------P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~el 264 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTD--------------PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKEL 264 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHS--------------TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHH
Confidence 45788999999999854 5 778887555555444 3578888999998
Q ss_pred HHcCCCCCH-HHHHHHHH---HHHhcCChHHHHHHHHHHhhcCCC
Q 048235 304 LHHGLHFNA-KRHLRMIL---DASRAGKVELLEITWEHLARADRI 344 (455)
Q Consensus 304 ~~~~~~p~~-~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~~~ 344 (455)
.+ +.||. ..+..++. .....|..++....+.++.+.+|.
T Consensus 265 le--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 265 QE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp HH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred Hh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 88 34553 22222221 112356667777777777766644
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.64 E-value=3.9e-07 Score=73.86 Aligned_cols=119 Identities=9% Similarity=0.167 Sum_probs=63.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHhcCCH--HHH
Q 048235 139 EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQA-CLDSGNI--QNA 215 (455)
Q Consensus 139 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~--~~a 215 (455)
.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+.... +...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHH
Confidence 344555555555544442 223444555555555555555555555555544322 34445555555 5555665 666
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048235 216 AYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
...|+...+..+.+...+..+..+|...|++++|...|+++.+.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66666665545555566666666666666666666666666653
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.64 E-value=8.1e-07 Score=76.51 Aligned_cols=197 Identities=10% Similarity=-0.058 Sum_probs=140.5
Q ss_pred hcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048235 19 QAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAV-------LNACVRRKQWEGAFWVLQQLKQQGQKPS 91 (455)
Q Consensus 19 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~m~~~~~~p~ 91 (455)
..++...|.+.|.++... .+-....|+.+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~----------------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~ 79 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY----------------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMS 79 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGG
T ss_pred cCCCHHHHHHHHHHHHHh----------------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChh
Confidence 689999999999999853 25567889888 4666666666666655555443 2222
Q ss_pred ----------------------HhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 048235 92 ----------------------ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAV 149 (455)
Q Consensus 92 ----------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 149 (455)
......+..++...|++++|.++|+.+...++.+. ....+...+.+.+++++|+..|
T Consensus 80 ~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l 158 (282)
T 4f3v_A 80 TLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQV 158 (282)
T ss_dssp GGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHH
Confidence 12233456678899999999999998877655344 6667777889999999999999
Q ss_pred HHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048235 150 EDMERRGIVG--SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL--VVSYTGLIQACLDSGNIQNAAYIFNQMKNF 225 (455)
Q Consensus 150 ~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 225 (455)
+...... .| ....+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 159 ~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 159 KSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 7553321 11 123567788899999999999999998875433243 445666788888999999999999999764
Q ss_pred CCCCHHHHHHH
Q 048235 226 CSPNLVTCNIM 236 (455)
Q Consensus 226 ~~~~~~~~~~l 236 (455)
.+ +...+..|
T Consensus 238 ~P-~~~~~~aL 247 (282)
T 4f3v_A 238 HP-EPKVAAAL 247 (282)
T ss_dssp SC-CHHHHHHH
T ss_pred CC-cHHHHHHH
Confidence 33 34444443
No 147
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.64 E-value=2.1e-05 Score=74.73 Aligned_cols=330 Identities=8% Similarity=-0.071 Sum_probs=194.0
Q ss_pred CCCCHhhHHHHHHHHHhcCC-hhHHHHHHHHhhcCCccccccccccccCCC-CCCCHhHHHHHHHHHH----hcCCHHHH
Q 048235 3 SYPDTVAYRSIAVTLGQAGH-IKELFDVIDSMRSLPKKKFKTGTLERWDPR-LEPDIVVYNAVLNACV----RRKQWEGA 76 (455)
Q Consensus 3 ~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~----~~~~~~~a 76 (455)
..|++..|...+....+.+. .+....+|+..... -| .+.+...|...+..+. ..++.+.+
T Consensus 43 ~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~--------------vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~v 108 (493)
T 2uy1_A 43 KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQ--------------FENYWDSYGLYKEYIEEEGKIEDEQTRIEKI 108 (493)
T ss_dssp TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHH--------------STTCTTCHHHHHHHHHHTSSCSSHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH--------------cCCCcccHHHHHHHHHHHHhchhhhHHHHHH
Confidence 46899999999998887774 45677888887642 22 2457789998887754 34678899
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHH-------------cCChhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcC--
Q 048235 77 FWVLQQLKQQGQKPSATTYGLVMEVMLA-------------CGKYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREG-- 140 (455)
Q Consensus 77 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~g-- 140 (455)
..+|++.....+.--..+|......-.. .+.+..|..+++.+..... .+...|...+.--...+
T Consensus 109 R~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~ 188 (493)
T 2uy1_A 109 RNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMK 188 (493)
T ss_dssp HHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCcc
Confidence 9999999974222112223322221111 1122334444444432211 23445655555432211
Q ss_pred C-----hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 048235 141 K-----TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNA 215 (455)
Q Consensus 141 ~-----~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 215 (455)
- .+.+..+|+++.... +.+...|...+..+...|+.+.|..++++.... +.+...+. .|....+.+..
T Consensus 189 ~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~ 261 (493)
T 2uy1_A 189 LGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV 261 (493)
T ss_dssp CCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH
T ss_pred CcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH
Confidence 1 345678999988763 455777888888888999999999999999988 33333332 22222222222
Q ss_pred -HHHHHHHHhc---------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHH
Q 048235 216 -AYIFNQMKNF---------CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLD 285 (455)
Q Consensus 216 -~~~~~~~~~~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 285 (455)
..+.+..... .......|...+....+.++.+.|..+|+++ ... ..+...|.....
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-------------~~~~~v~i~~A~ 327 (493)
T 2uy1_A 262 YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-------------GVGPHVFIYCAF 327 (493)
T ss_dssp HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-------------CCCHHHHHHHHH
T ss_pred HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-------------CCChHHHHHHHH
Confidence 1122111000 0112355777777777788899999999998 322 234445543332
Q ss_pred HHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchH
Q 048235 286 ACAA-EKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYG 364 (455)
Q Consensus 286 ~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (455)
.-.. .++.+.|..+|+...+.-. -++..+...+.-..+.|+.+.|..+|+.+.+ ...++...+..-...|+.+
T Consensus 328 lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~ 401 (493)
T 2uy1_A 328 IEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSME 401 (493)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHH
Confidence 2222 3369999999999988421 1233455566666888999999999999832 2222322222223668888
Q ss_pred HHHHHhhhc
Q 048235 365 SAISCLVSH 373 (455)
Q Consensus 365 ~A~~~~~~~ 373 (455)
.+..+++..
T Consensus 402 ~~r~v~~~~ 410 (493)
T 2uy1_A 402 LFRELVDQK 410 (493)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887766643
No 148
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.63 E-value=0.00012 Score=64.90 Aligned_cols=233 Identities=9% Similarity=-0.008 Sum_probs=170.5
Q ss_pred hHHHHHHH---HHhcCChh-HHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCC----------HH
Q 048235 9 AYRSIAVT---LGQAGHIK-ELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQ----------WE 74 (455)
Q Consensus 9 ~~~~li~~---~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~ 74 (455)
.|..+... ..+.|.+. +|+++++.+... .+-+..+||.--..+...+. ++
T Consensus 28 ~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~----------------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~ 91 (331)
T 3dss_A 28 LYQSATQAVFQKRQAGELDESVLELTSQILGA----------------NPDFATLWNCRREVLQHLETEKSPEESAALVK 91 (331)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT----------------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----------------CchhHHHHHHHHHHHHHhcccccchhhhHHHH
Confidence 45444443 34566665 799999999853 24556677766555544443 68
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHH
Q 048235 75 GAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK--YNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGK-TDEAVSAVED 151 (455)
Q Consensus 75 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~ 151 (455)
+++.+++.+....++ +..+|+.-..++.+.++ ++.++.+++++....+.|..+|+.-.-++...|. ++++++.+++
T Consensus 92 ~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~ 170 (331)
T 3dss_A 92 AELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDS 170 (331)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 899999999987665 78888887777778884 8899999999999999999999998888888888 5999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc--------
Q 048235 152 MERRGIVGSAALYYDLARCLCSA--------------GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDS-------- 209 (455)
Q Consensus 152 m~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-------- 209 (455)
+.+.+ +.+...|+.....+... +.++++++.+.......+. |...|+-+-..+.+.
T Consensus 171 ~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~ 248 (331)
T 3dss_A 171 LITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSV 248 (331)
T ss_dssp HHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCH
T ss_pred HHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccch
Confidence 99986 44666676655555444 4578899999998887654 777877555555554
Q ss_pred ---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH---HHhcCChhHHHHHHHHHHhcc
Q 048235 210 ---GNIQNAAYIFNQMKNFCSPNLVTCNIMVKA---YLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 210 ---~~~~~a~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~ 260 (455)
+.++++++.++++.+..|.+.-.+..++.. ....+..+++...+.++.+..
T Consensus 249 ~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 249 EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 457889999999987655554433333221 124577788999999998843
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.62 E-value=1.7e-06 Score=78.04 Aligned_cols=150 Identities=18% Similarity=0.092 Sum_probs=109.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--------------HHHHHHHHHH
Q 048235 140 GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPL--------------VVSYTGLIQA 205 (455)
Q Consensus 140 g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--------------~~~~~~li~~ 205 (455)
+++++|+..++...+.. +-+...+..+...|.+.|++++|...|++..+...... ..+|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34445554444333221 11345677788888999999999999999888754422 4778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHH
Q 048235 206 CLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTML 284 (455)
Q Consensus 206 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li 284 (455)
|.+.|++++|...|++..+..+.+...|..+..+|...|++++|...|+++++.. | +...+..+.
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------------P~~~~a~~~l~ 271 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--------------PNNKAAKTQLA 271 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------SSCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--------------CCCHHHHHHHH
Confidence 8888888888888888877777778888888888888888888888888888754 5 566777777
Q ss_pred HHHHHcCCHHHH-HHHHHHHH
Q 048235 285 DACAAEKRWDDL-ELVYKRML 304 (455)
Q Consensus 285 ~~~~~~~~~~~a-~~~~~~m~ 304 (455)
..+...|+.++| ..+++.|.
T Consensus 272 ~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 272 VCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 788888877777 44555554
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.62 E-value=3.2e-07 Score=71.95 Aligned_cols=99 Identities=15% Similarity=0.052 Sum_probs=66.6
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 048235 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNT 135 (455)
Q Consensus 56 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 135 (455)
+...+..+...+.+.|++++|...|++....... +...|..+..++...|++++|...|++.....+.+..++..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 4556666666777777777777777777665433 566666666667777777777777777666666666666667777
Q ss_pred HHhcCChHHHHHHHHHHHHC
Q 048235 136 LWREGKTDEAVSAVEDMERR 155 (455)
Q Consensus 136 ~~~~g~~~~a~~~~~~m~~~ 155 (455)
|...|++++|...|++..+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777666554
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.60 E-value=1.6e-07 Score=77.80 Aligned_cols=155 Identities=14% Similarity=0.067 Sum_probs=94.5
Q ss_pred HcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---------------HHHHHHHH
Q 048235 104 ACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS---------------AALYYDLA 168 (455)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---------------~~~~~~l~ 168 (455)
..|+++.+.+.++.-....+.....+..+...+...|++++|+..|++..+...... ...+..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 344444444444332221112344555666667777777777777777666421111 25677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhH
Q 048235 169 RCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEE 248 (455)
Q Consensus 169 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 248 (455)
.+|...|++++|...+++..+... .+...+..+..+|...|++++|...|++..+..+.+...+..+..++...++..+
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888877653 3677788888888888888888888888877666777788888777777776666
Q ss_pred HH-HHHHHHHhc
Q 048235 249 AM-KLFQEMAED 259 (455)
Q Consensus 249 a~-~~~~~m~~~ 259 (455)
+. ..|..+...
T Consensus 175 ~~~~~~~~~f~~ 186 (198)
T 2fbn_A 175 KDKLTFGGMFDK 186 (198)
T ss_dssp ------------
T ss_pred HHHHHHHHHhcc
Confidence 65 455555443
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.57 E-value=2.1e-06 Score=65.16 Aligned_cols=108 Identities=13% Similarity=0.154 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC
Q 048235 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275 (455)
Q Consensus 196 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p 275 (455)
...+..+...+.+.|++++|+..|++..+..|.+...|..+..+|...|++++|++.+++.++.... ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~----------~~~ 77 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE----------TRA 77 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------TTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc----------cch
Confidence 3456778899999999999999999998878888999999999999999999999999999875400 111
Q ss_pred c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 048235 276 D----IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRH 315 (455)
Q Consensus 276 ~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 315 (455)
+ ..+|..+..++...|++++|++.|++..+. .||+.+.
T Consensus 78 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 78 DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 1 246777888889999999999999998873 4565443
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.57 E-value=3.3e-06 Score=63.91 Aligned_cols=94 Identities=13% Similarity=0.023 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-c
Q 048235 198 SYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-D 276 (455)
Q Consensus 198 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~ 276 (455)
.+..+...+.+.|++++|...|++..+..+.+...|..+..+|...|++++|...|++.++.. | +
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------------p~~ 71 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--------------PNF 71 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------CCc
Confidence 344445555555555555555555554444555555555555555555555555555555532 3 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 277 IYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 277 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
...|..+..++...|++++|...|++..+
T Consensus 72 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 72 VRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 44555555555555555555555555554
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.55 E-value=3.2e-06 Score=62.70 Aligned_cols=97 Identities=13% Similarity=0.013 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048235 58 VVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLW 137 (455)
Q Consensus 58 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 137 (455)
..+..+...+...|++++|...|++....... +...+..+..++...|+++.|...+++.....+.+...+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 33444444444445555555555444443221 34444444444444555555555555444444444445555555555
Q ss_pred hcCChHHHHHHHHHHHHC
Q 048235 138 REGKTDEAVSAVEDMERR 155 (455)
Q Consensus 138 ~~g~~~~a~~~~~~m~~~ 155 (455)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 555555555555554443
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.53 E-value=4.3e-06 Score=63.25 Aligned_cols=97 Identities=9% Similarity=-0.046 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048235 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241 (455)
Q Consensus 162 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 241 (455)
..+..+...+...|++++|...|++..+.... +...|..+..++.+.|++++|...|++..+..+.+...|..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34555666677777777777777777666433 56677777777777777777777777776666666777777777777
Q ss_pred hcCChhHHHHHHHHHHhc
Q 048235 242 EHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 242 ~~~~~~~a~~~~~~m~~~ 259 (455)
..|++++|...|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 778888887777777663
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.52 E-value=6.9e-06 Score=60.82 Aligned_cols=112 Identities=14% Similarity=0.012 Sum_probs=95.1
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048235 91 SATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARC 170 (455)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 170 (455)
+...+..+...+...|+++.|...|++.....+.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 455677788889999999999999999998888889999999999999999999999999998875 3457788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 048235 171 LCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQ 204 (455)
Q Consensus 171 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 204 (455)
+...|++++|...+++..+.... +...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 114 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQN 114 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 99999999999999999887543 4555554443
No 157
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.51 E-value=2.7e-06 Score=64.50 Aligned_cols=112 Identities=13% Similarity=0.172 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC
Q 048235 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275 (455)
Q Consensus 196 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p 275 (455)
...+..+...+...|+++.|...|++.....+.+...+..+...|...|++++|...++++...... ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~ 73 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE----------NRE 73 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----------STT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc----------cch
Confidence 4567778888899999999999999988777778889999999999999999999999999886410 011
Q ss_pred c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048235 276 D----IYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMI 319 (455)
Q Consensus 276 ~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 319 (455)
+ ..++..+...+...|++++|.+.|+++.+.. |+......+.
T Consensus 74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~ 119 (131)
T 1elr_A 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQ 119 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 2 6788888899999999999999999998843 4554444433
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.50 E-value=5.5e-06 Score=66.01 Aligned_cols=95 Identities=13% Similarity=0.076 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-
Q 048235 197 VSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP- 275 (455)
Q Consensus 197 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p- 275 (455)
..+..+...+...|++++|...|++..+..+.+...|..+..+|...|++++|+..|++.++.. |
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------p~ 77 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--------------PK 77 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------------CC
Confidence 3344444444445555555555544444444444444445555555555555555555544432 2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 276 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
+...|..+..+|...|++++|...|++..+
T Consensus 78 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 78 YSKAWSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444444444445555555555544444
No 159
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.47 E-value=2.8e-06 Score=62.40 Aligned_cols=100 Identities=11% Similarity=0.034 Sum_probs=64.3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--CHHHHHHHH
Q 048235 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIP--NALAYKVLV 133 (455)
Q Consensus 56 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li 133 (455)
+...|..+...+...|++++|...|++..+.... +...+..+..++...|++++|...|++.....+. +..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 4556666666677777777777777776665432 4555666666666666666666666666665555 566666666
Q ss_pred HHHHhc-CChHHHHHHHHHHHHCC
Q 048235 134 NTLWRE-GKTDEAVSAVEDMERRG 156 (455)
Q Consensus 134 ~~~~~~-g~~~~a~~~~~~m~~~~ 156 (455)
.++... |++++|.+.+++.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 666666 66666666666665543
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.46 E-value=6.4e-06 Score=63.85 Aligned_cols=93 Identities=14% Similarity=0.003 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHH
Q 048235 200 TGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYT 279 (455)
Q Consensus 200 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~ 279 (455)
..+...+...|++++|...|+......+.+...|..+..+|...|++++|...|++..... +.+...
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------p~~~~~ 88 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-------------INEPRF 88 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------TTCTHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------------CCCcHH
Confidence 3344444445555555555554444444444445555555555555555555555554432 113344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 280 FNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 280 ~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
+..+..+|...|++++|...|++..+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444455555555555555554444
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.46 E-value=3.9e-06 Score=65.11 Aligned_cols=98 Identities=15% Similarity=0.067 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048235 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241 (455)
Q Consensus 162 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 241 (455)
..+..+...+...|++++|...|+......+. +...|..+..+|...|++++|...|++.....+.+...+..+..+|.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 34455666677777777777777777766533 56677777777777888888888887777666667777777777888
Q ss_pred hcCChhHHHHHHHHHHhcc
Q 048235 242 EHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 242 ~~~~~~~a~~~~~~m~~~~ 260 (455)
..|++++|...|++..+..
T Consensus 98 ~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 8888888888888777654
No 162
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.45 E-value=2.3e-05 Score=73.26 Aligned_cols=195 Identities=14% Similarity=0.071 Sum_probs=143.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH----------------hhHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CC
Q 048235 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSA----------------TTYGLVMEVMLACGKYNLVYEFFRKVQKSYI--PN 125 (455)
Q Consensus 64 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~ 125 (455)
...+.+.|++++|++.|..+.+....... ..+..+...|...|++++|.+.+..+..... ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45577899999999999999886433211 2367788999999999999999998765321 22
Q ss_pred H----HHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----
Q 048235 126 A----LAYKVLVNTLWREGKTDEAVSAVEDMER----RGIVG-SAALYYDLARCLCSAGKCEEALMQMDKICKVAN---- 192 (455)
Q Consensus 126 ~----~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~---- 192 (455)
. .+.+.+-..+...|+++.|..++.+... .+..+ ...++..+...|...|++++|..++.++...-.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 2333344445567899999999988764 23233 356777899999999999999999998765311
Q ss_pred CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048235 193 KP-LVVSYTGLIQACLDSGNIQNAAYIFNQMKNF---CSPN----LVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258 (455)
Q Consensus 193 ~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 258 (455)
++ ...++..++..|...|++++|..++++.... ...+ ...+..+...+...+++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12 2567889999999999999999999987542 2222 24566777778889999999998888765
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.44 E-value=7.6e-06 Score=62.76 Aligned_cols=101 Identities=12% Similarity=-0.032 Sum_probs=72.4
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 048235 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLV 133 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 133 (455)
+.+...|..+...+...|++++|...|.+..+.... +...+..+..++...|+++.|...+++.....+.+..++..+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 456677777777777777777777777777776433 5666777777777777777777777777766666677777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHC
Q 048235 134 NTLWREGKTDEAVSAVEDMERR 155 (455)
Q Consensus 134 ~~~~~~g~~~~a~~~~~~m~~~ 155 (455)
.++...|++++|+..|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 7777777777777777776654
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.44 E-value=8.6e-06 Score=62.45 Aligned_cols=100 Identities=16% Similarity=0.067 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 048235 160 SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKA 239 (455)
Q Consensus 160 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 239 (455)
+...+..+...+...|++++|...|......... +...+..+..++...|+++.|...++...+..+.+...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 4555666666777777777777777776665432 566677777777777777777777777766666667777777777
Q ss_pred HHhcCChhHHHHHHHHHHhcc
Q 048235 240 YLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 240 ~~~~~~~~~a~~~~~~m~~~~ 260 (455)
|...|++++|...|++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 777777777777777776643
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.43 E-value=3.9e-06 Score=61.55 Aligned_cols=104 Identities=13% Similarity=0.035 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048235 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308 (455)
Q Consensus 229 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 308 (455)
+...+..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|.+.+++..+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~ 71 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-------------PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 34445556666666777777777777766643 22455666666666777777777777777666321
Q ss_pred C-CCHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCCC
Q 048235 309 H-FNAKRHLRMILDASRA-GKVELLEITWEHLARADRIT 345 (455)
Q Consensus 309 ~-p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~ 345 (455)
. .+...+..+...+.+. |++++|.+.++.+....+.+
T Consensus 72 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 72 DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp CTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred ccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 1 0245566666666677 77777777777776665543
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.43 E-value=3.8e-06 Score=69.34 Aligned_cols=131 Identities=8% Similarity=-0.058 Sum_probs=82.7
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCC---C-----------HhHHHHHHHHHHhcCC
Q 048235 7 TVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEP---D-----------IVVYNAVLNACVRRKQ 72 (455)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------~~~~~~li~~~~~~~~ 72 (455)
...+..+...+.+.|++++|+..|++..... ...| . ..+|..+..+|...|+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 103 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF--------------IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD 103 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------------TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------------hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3457777888999999999999999998531 0011 1 2566666677777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHH-HHHHH
Q 048235 73 WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAV-SAVED 151 (455)
Q Consensus 73 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~ 151 (455)
+++|+..+++..+.... +...+..+..++...|+++.|...|++.....+.+..++..+..++...++.+++. ..+..
T Consensus 104 ~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 182 (198)
T 2fbn_A 104 YPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGG 182 (198)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777665322 55666666666777777777777777766665556666666666666555555544 33333
Q ss_pred H
Q 048235 152 M 152 (455)
Q Consensus 152 m 152 (455)
+
T Consensus 183 ~ 183 (198)
T 2fbn_A 183 M 183 (198)
T ss_dssp -
T ss_pred H
Confidence 3
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.43 E-value=4.4e-06 Score=63.27 Aligned_cols=98 Identities=9% Similarity=0.154 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CC----HHHHH
Q 048235 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS---PN----LVTCN 234 (455)
Q Consensus 162 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~----~~~~~ 234 (455)
..+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...++......+ ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3455566666677777777777777666542 2566666777777777777777777777654322 22 66777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 235 IMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 235 ~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
.+..++...|++++|.+.|+++.+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 77888888888888888888887754
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.42 E-value=1.1e-05 Score=64.20 Aligned_cols=99 Identities=10% Similarity=-0.008 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 048235 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAY 240 (455)
Q Consensus 161 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 240 (455)
...+..+...+...|++++|+..|++..+.... +...|..+..+|...|++++|...|++..+..+.+...|..+..+|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345566666677777777777777777665433 5666777777777777777777777777666666677777777777
Q ss_pred HhcCChhHHHHHHHHHHhcc
Q 048235 241 LEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 241 ~~~~~~~~a~~~~~~m~~~~ 260 (455)
...|++++|...|++.++..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC
Confidence 77777777777777777654
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.42 E-value=8.7e-06 Score=61.72 Aligned_cols=96 Identities=10% Similarity=0.131 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCC----HHHHHH
Q 048235 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNF---CSPN----LVTCNI 235 (455)
Q Consensus 163 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~ 235 (455)
.+..+...+.+.|++++|+..|.+..+..+. +..+|..+..+|...|++++|+..|++..+. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3445666666666666666666666665432 4566666666666667777766666665432 1111 235666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc
Q 048235 236 MVKAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 236 li~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
+..++...|++++|++.|++.+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 677777788888888888887764
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=1.2e-05 Score=62.34 Aligned_cols=101 Identities=14% Similarity=0.013 Sum_probs=73.7
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHH
Q 048235 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPS----ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAY 129 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 129 (455)
+.+...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...+++.....+.+...+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 445667777777777777777777777777764 334 56666677777777788888777777776666667777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048235 130 KVLVNTLWREGKTDEAVSAVEDMERRG 156 (455)
Q Consensus 130 ~~li~~~~~~g~~~~a~~~~~~m~~~~ 156 (455)
..+..++...|++++|...|++..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 777777778888888888887777654
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.35 E-value=6.3e-06 Score=61.87 Aligned_cols=90 Identities=13% Similarity=0.001 Sum_probs=46.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHH
Q 048235 202 LIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTF 280 (455)
Q Consensus 202 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~ 280 (455)
+...+.+.|++++|...|++..+..+.+...|..+..++...|++++|+..|++.++.. | +...+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------------P~~~~~~ 88 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------------PKDIAVH 88 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CCCHHHH
Confidence 34444455555555555555544444455555555555555555555555555555532 3 34444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 281 NTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 281 ~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
..+..++...|++++|...+++..+
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 89 AALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555555555555555555544
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=5.4e-05 Score=70.75 Aligned_cols=168 Identities=6% Similarity=-0.046 Sum_probs=80.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC-CHHH
Q 048235 164 YYDLARCLCSAGKCEEALMQMDKICKVANK-PLV----VSYTGLIQACLDSGNIQNAAYIFNQMKNF-----CSP-NLVT 232 (455)
Q Consensus 164 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~~ 232 (455)
+..++..|...|++++|.+.+..+...-.. ++. .+.+.+...+...|+++.|..+++..... ..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 344555555555555555555554332100 011 11222222333445566666666554321 111 1345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC
Q 048235 233 CNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHH--GLH 309 (455)
Q Consensus 233 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~ 309 (455)
+..+...|...|++++|..+++++...-. ...-.+ ...++..++..|...|++++|..++++.... .+.
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 209 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFK--------KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY 209 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHT--------TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHH--------hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC
Confidence 55666666666666666666666554320 000112 2345666666666667777776666665541 111
Q ss_pred -C-C--HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048235 310 -F-N--AKRHLRMILDASRAGKVELLEITWEHLA 339 (455)
Q Consensus 310 -p-~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 339 (455)
| . ...+..+...+...|++++|...|.+..
T Consensus 210 ~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 210 CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1 1 1223333334456666666666555543
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=3.6e-05 Score=59.67 Aligned_cols=109 Identities=17% Similarity=0.099 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 048235 125 NALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS----AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYT 200 (455)
Q Consensus 125 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 200 (455)
+...+..+...+...|++++|...|++..+.. |+ ...+..+..+|...|++++|...+++..+.... +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 45556666666666666666666666665543 33 445555666666666666666666666655322 455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 048235 201 GLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIM 236 (455)
Q Consensus 201 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 236 (455)
.+..++...|++++|...|++..+..+.+...+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 139 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 666666666777777777766655444444444433
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.32 E-value=9.2e-06 Score=60.97 Aligned_cols=94 Identities=7% Similarity=0.068 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 048235 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHG 244 (455)
Q Consensus 165 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 244 (455)
..+...+.+.|++++|...+++..+..+. +...+..+..++...|++++|...|++..+..+.+...+..+..+|...|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34555666777777777777777766533 56666777777777777777777777776666666777777777777777
Q ss_pred ChhHHHHHHHHHHhc
Q 048235 245 LFEEAMKLFQEMAED 259 (455)
Q Consensus 245 ~~~~a~~~~~~m~~~ 259 (455)
++++|...|++.++.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 100 NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 777777777777663
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.27 E-value=1.5e-06 Score=82.01 Aligned_cols=151 Identities=15% Similarity=0.070 Sum_probs=112.7
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHH
Q 048235 107 KYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS--------------AALYYDLARCLC 172 (455)
Q Consensus 107 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--------------~~~~~~l~~~~~ 172 (455)
+++.|...|+......+.....|..+...|.+.|++++|+..|++..+...... ...|..+..+|.
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544433332223556788888889999999999999998887532221 577888999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHH-
Q 048235 173 SAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMK- 251 (455)
Q Consensus 173 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~- 251 (455)
+.|++++|+..+++..+.... +...|..+..+|...|++++|...|++..+..+.+...+..+..++...++.+++.+
T Consensus 329 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887644 688889999999999999999999999988777777888889888988888887764
Q ss_pred HHHHHHh
Q 048235 252 LFQEMAE 258 (455)
Q Consensus 252 ~~~~m~~ 258 (455)
+++.|..
T Consensus 408 ~~~~~f~ 414 (457)
T 1kt0_A 408 IYANMFK 414 (457)
T ss_dssp HHHHC--
T ss_pred HHHHHHh
Confidence 5555543
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.25 E-value=1.1e-05 Score=63.64 Aligned_cols=135 Identities=13% Similarity=0.107 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCC----HH
Q 048235 163 LYYDLARCLCSAGKCEEALMQMDKICKVAN---KPL--VVSYTGLIQACLDSGNIQNAAYIFNQMKNF--CSPN----LV 231 (455)
Q Consensus 163 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~---~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~ 231 (455)
++..+...+...|++++|...+++..+... .+. ..++..+...+...|++++|...+++.... ..++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344455555556666666666655443211 000 235666667777777777777777766432 1111 34
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 232 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
.+..+...+...|++++|...+++..+.... .+..+ ...++..+...|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE--------LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------ccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5667777888888888888888887654200 00111 234566677778888888888888877665
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.24 E-value=1.7e-05 Score=62.50 Aligned_cols=139 Identities=10% Similarity=-0.003 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhcc
Q 048235 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKNF--CSPN----LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDK 269 (455)
Q Consensus 196 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 269 (455)
..++..+...+...|++++|...+++..+. ..++ ..++..+...+...|++++|...+++..+....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------- 81 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ------- 81 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------
Confidence 456778888999999999999999987543 1122 246788889999999999999999998764300
Q ss_pred CCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 048235 270 KGLVIP-DIYTFNTMLDACAAEKRWDDLELVYKRMLHH----GLHFN-AKRHLRMILDASRAGKVELLEITWEHLARAD 342 (455)
Q Consensus 270 ~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 342 (455)
.+..+ ....+..+...+...|++++|...+++..+. +..+. ...+..+...+...|++++|.+.+++..+..
T Consensus 82 -~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 82 -LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred -hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 00011 1456777888899999999999999988752 21111 3456667777889999999999998876543
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.23 E-value=5e-05 Score=57.32 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=9.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 048235 235 IMVKAYLEHGLFEEAMKLFQEMAE 258 (455)
Q Consensus 235 ~li~~~~~~~~~~~a~~~~~~m~~ 258 (455)
.+..++...|++++|...|+++.+
T Consensus 44 ~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 44 WLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 333333444444444444444333
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.21 E-value=7.1e-05 Score=56.45 Aligned_cols=92 Identities=16% Similarity=0.046 Sum_probs=53.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHH
Q 048235 167 LARCLCSAGKCEEALMQMDKICKVANKPLV---VSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPN---LVTCNIMVKAY 240 (455)
Q Consensus 167 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~ 240 (455)
+...+...|++++|...|+...+.... +. ..+..+..++...|++++|...|+.+....+.+ ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 444555566666666666665554322 12 345555666666666666666666665544444 45566666666
Q ss_pred HhcCChhHHHHHHHHHHhc
Q 048235 241 LEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 241 ~~~~~~~~a~~~~~~m~~~ 259 (455)
...|++++|...|+++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666664
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.19 E-value=3.7e-05 Score=72.49 Aligned_cols=130 Identities=18% Similarity=0.160 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048235 161 AALYYDLARCLCSAGKCEEALMQMDKICKVANKPL--------------VVSYTGLIQACLDSGNIQNAAYIFNQMKNFC 226 (455)
Q Consensus 161 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 226 (455)
...+..+...+.+.|++++|...|++..+...... ..+|..+..+|.+.|++++|+..+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 45677788999999999999999999888643322 5788899999999999999999999998888
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHH-HHHHHH
Q 048235 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLEL-VYKRML 304 (455)
Q Consensus 227 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~-~~~~m~ 304 (455)
+.+...|..+..+|...|++++|...|+++++.. | +...+..+..++.+.++.+++.+ ++..|.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--------------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--------------PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999853 6 55677778888888887776653 344443
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.18 E-value=3.4e-05 Score=61.15 Aligned_cols=62 Identities=21% Similarity=0.137 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 231 VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 231 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
..|..+..+|...|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-------------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-------------ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-------------CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 344555555555555555555555555532 11344555555555555555555555555554
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.17 E-value=5.6e-05 Score=59.91 Aligned_cols=66 Identities=15% Similarity=0.112 Sum_probs=56.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 195 LVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 195 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
+...|..+..+|.+.|+++.|...++...+..+.+...|..+..+|...|++++|...|++.++..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 346778888888899999999999988887777788888889999999999999999999988854
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.16 E-value=1.5e-06 Score=82.44 Aligned_cols=122 Identities=14% Similarity=0.065 Sum_probs=78.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048235 12 SIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPS 91 (455)
Q Consensus 12 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 91 (455)
.+...+.+.|++++|++.|++..+. .+.+..+|..+..+|.+.|++++|+..+++..+.... +
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~ 73 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIEL----------------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-Y 73 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-C
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh----------------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-C
Confidence 3344556677777777777777642 2345677777777777777777777777777776433 5
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHH--HHhcCChHHHHHHHH
Q 048235 92 ATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNT--LWREGKTDEAVSAVE 150 (455)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 150 (455)
...+..+..+|.+.|++++|.+.|++.....+.+..++..+..+ +.+.|++++|++.++
T Consensus 74 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 74 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66677777777777777777777777766655555555555555 666677777777766
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.14 E-value=6.9e-06 Score=61.20 Aligned_cols=87 Identities=15% Similarity=0.170 Sum_probs=53.0
Q ss_pred cCCHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHH
Q 048235 174 AGKCEEALMQMDKICKVAN--KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMK 251 (455)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 251 (455)
.|++++|+..|++..+.+. +.+..++..+..+|...|++++|...|++..+..+.+...+..+..++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4556666666666665431 12345566666666677777777777776666555666666667777777777777777
Q ss_pred HHHHHHhcc
Q 048235 252 LFQEMAEDS 260 (455)
Q Consensus 252 ~~~~m~~~~ 260 (455)
.|++.+...
T Consensus 83 ~~~~al~~~ 91 (117)
T 3k9i_A 83 LLLKIIAET 91 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 777766643
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.12 E-value=1.1e-05 Score=60.17 Aligned_cols=84 Identities=14% Similarity=0.076 Sum_probs=36.2
Q ss_pred CChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 048235 140 GKTDEAVSAVEDMERRG--IVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAY 217 (455)
Q Consensus 140 g~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 217 (455)
|++++|+..|++..+.+ -+.+...+..+..+|...|++++|...+++..+..+. +..++..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444444444432 1112233444444444455555555555544444322 34444444445555555555555
Q ss_pred HHHHHHh
Q 048235 218 IFNQMKN 224 (455)
Q Consensus 218 ~~~~~~~ 224 (455)
.|++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544433
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.09 E-value=2.1e-05 Score=74.54 Aligned_cols=120 Identities=12% Similarity=0.050 Sum_probs=69.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChh
Q 048235 168 ARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFE 247 (455)
Q Consensus 168 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 247 (455)
...+.+.|++++|...+++..+.... +..++..+..+|.+.|++++|...+++..+..+.+...|..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 33445566777777777666665422 46666666666667777777777776666655556666666666666677777
Q ss_pred HHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 048235 248 EAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDA--CAAEKRWDDLELVYKR 302 (455)
Q Consensus 248 ~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~--~~~~~~~~~a~~~~~~ 302 (455)
+|.+.|++..+.. | +...+..+..+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~--------------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVK--------------PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHS--------------TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 7777776666643 3 22333333333 5556666666666554
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.08 E-value=0.00035 Score=67.46 Aligned_cols=188 Identities=9% Similarity=-0.095 Sum_probs=148.7
Q ss_pred hHHHHHHHH---HHhcCC-HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCC----------hhHHHHHHHHHHhcCC
Q 048235 58 VVYNAVLNA---CVRRKQ-WEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGK----------YNLVYEFFRKVQKSYI 123 (455)
Q Consensus 58 ~~~~~li~~---~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~ 123 (455)
..|..+... ..+.|. .++|++.++++...++. +...|+.--.++.+.|+ ++++.+.++.+....+
T Consensus 26 ~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p 104 (567)
T 1dce_A 26 KLYQSATQAVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP 104 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 445444433 233444 57889999999997655 56667666666666666 8999999999999988
Q ss_pred CCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCcHHHHH
Q 048235 124 PNALAYKVLVNTLWREG--KTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG-KCEEALMQMDKICKVANKPLVVSYT 200 (455)
Q Consensus 124 ~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~ 200 (455)
.+..+|+.-.-++.+.| +++++++.++++.+.+ +-+...|+.-...+...| .++++++.+.++.+..+. +...|+
T Consensus 105 K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~ 182 (567)
T 1dce_A 105 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWH 182 (567)
T ss_dssp TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHH
T ss_pred CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHH
Confidence 99999999999999999 7799999999999986 346777877777777888 899999999999988755 788888
Q ss_pred HHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhH
Q 048235 201 GLIQACLDS--------------GNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEE 248 (455)
Q Consensus 201 ~li~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 248 (455)
.....+.+. +.++++.+.++......|.|...|+-+-..+...+..++
T Consensus 183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 777776663 557889999998887788899999998888877776444
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.08 E-value=6.4e-05 Score=68.60 Aligned_cols=121 Identities=12% Similarity=0.072 Sum_probs=84.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc---------------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 048235 164 YYDLARCLCSAGKCEEALMQMDKICKV---------------ANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP 228 (455)
Q Consensus 164 ~~~l~~~~~~~g~~~~a~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 228 (455)
+..+...+.+.|++++|+..|++..+. ..+.+..+|..+..+|.+.|++++|...+++..+..+.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 334444555555555555555554431 01124567788888888889999999998888876677
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHH
Q 048235 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLEL 298 (455)
Q Consensus 229 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~ 298 (455)
+...|..+..+|...|++++|...|++..+.. | +...+..+...+...++.+++.+
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--------------P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIA--------------PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888999999999999999888854 5 56666666666666666655543
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.07 E-value=3.5e-05 Score=70.29 Aligned_cols=137 Identities=7% Similarity=-0.027 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048235 8 VAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG 87 (455)
Q Consensus 8 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 87 (455)
..|..+...+.+.|++++|++.|++..............+......+.+..+|..+..+|.+.|++++|+..+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 35777888899999999999999998741000000000000000012234555556666666666666666666666543
Q ss_pred CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHH
Q 048235 88 QKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEA 145 (455)
Q Consensus 88 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 145 (455)
.. +...+..+..+|...|++++|...|++.....+.+...+..+..++...++.+++
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 22 4455555555566666666666666665555444555555555555554444444
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.99 E-value=0.00015 Score=56.32 Aligned_cols=100 Identities=13% Similarity=0.055 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------CH-----HHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchh
Q 048235 199 YTGLIQACLDSGNIQNAAYIFNQMKNFCSP-------NL-----VTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINRE 266 (455)
Q Consensus 199 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 266 (455)
+......+.+.|++++|...|++..+..+. +. ..|+.+..++.+.|++++|+..+++.++.-
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~------ 87 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF------ 87 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh------
Confidence 444555566666666666666666543222 33 388899999999999999999999998850
Q ss_pred hccCCCCCC-cHHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 267 YDKKGLVIP-DIYTF----NTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 267 ~~~~~~~~p-~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
...+.+.| +...| .....++...|++++|+..|++..+
T Consensus 88 -n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 88 -NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp -HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 00000147 45678 8888999999999999999999876
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.98 E-value=2.2e-05 Score=70.84 Aligned_cols=152 Identities=10% Similarity=-0.038 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048235 162 ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYL 241 (455)
Q Consensus 162 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 241 (455)
..+..+...+.+.|++++|...|++..... |+... +...++.+++...+. ...|..+..+|.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~---------~~~~~nla~~~~ 241 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK---------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH---------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH---------HHHHHHHHHHHH
Confidence 345556666666777777777777766543 22221 112222333222211 136778888888
Q ss_pred hcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 048235 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAK-RHLRMIL 320 (455)
Q Consensus 242 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~ 320 (455)
+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++.+ +.|+.. .+..+..
T Consensus 242 ~~g~~~~A~~~~~~al~~~-------------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~ 306 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-------------EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRA 306 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred HcCCHHHHHHHHHHHHHhC-------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 9999999999999988854 22677888888889999999999999988876 334432 3333333
Q ss_pred H-HHhcCChHHHHHHHHHHhhcCCCCC
Q 048235 321 D-ASRAGKVELLEITWEHLARADRITP 346 (455)
Q Consensus 321 ~-~~~~g~~~~a~~~~~~~~~~~~~~~ 346 (455)
. ....+..+.+...|..|....+.++
T Consensus 307 l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 307 LAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 3 2345666777788888876655443
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.98 E-value=2.3e-05 Score=70.72 Aligned_cols=150 Identities=9% Similarity=-0.012 Sum_probs=77.3
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048235 7 TVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ 86 (455)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 86 (455)
...+..+...+.+.|++++|+..|++.... .|+... +...++++++...+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-----------------~p~~~~-------~~~~~~~~~~~~~l~----- 229 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY-----------------MGDDFM-------FQLYGKYQDMALAVK----- 229 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH-----------------SCHHHH-------HTCCHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----------------hccchh-------hhhcccHHHHHHHHH-----
Confidence 345677778888999999999999998752 333321 112233333332221
Q ss_pred CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048235 87 GQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYD 166 (455)
Q Consensus 87 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 166 (455)
...|..+..++.+.|+++.|...+++.....+.+..+|..+..+|...|++++|...|++..+.. +.+...+..
T Consensus 230 -----~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~ 303 (338)
T 2if4_A 230 -----NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRE 303 (338)
T ss_dssp -----THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 12566666777777888888888877777666677777777788888888888888877776543 112333444
Q ss_pred HHHH-HHhcCCHHHHHHHHHHHHHcC
Q 048235 167 LARC-LCSAGKCEEALMQMDKICKVA 191 (455)
Q Consensus 167 l~~~-~~~~g~~~~a~~~~~~m~~~~ 191 (455)
+... ....+..+.+...|..|....
T Consensus 304 L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 304 LRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 4433 223455666777777766543
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.96 E-value=0.00084 Score=64.81 Aligned_cols=176 Identities=9% Similarity=-0.013 Sum_probs=144.7
Q ss_pred HcCC-hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048235 104 ACGK-YNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGK----------TDEAVSAVEDMERRGIVGSAALYYDLARCLC 172 (455)
Q Consensus 104 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 172 (455)
+.|. -++|.+.++.+....+.+..+|+.--.++...|+ ++++++.++.+.+.+ +-+..+|+.-...+.
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 118 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4444 4578999999999888889999987777777777 899999999999876 335677877777788
Q ss_pred hcC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc------
Q 048235 173 SAG--KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG-NIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH------ 243 (455)
Q Consensus 173 ~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~------ 243 (455)
+.+ +++++++.++++.+...+ +.++|+.-...+.+.| .++++.+.++++.+..+.|...|+.....+...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 888 779999999999998866 8888988888888888 899999999999888888999999888877763
Q ss_pred --------CChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHH
Q 048235 244 --------GLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDD 295 (455)
Q Consensus 244 --------~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~ 295 (455)
+.++++++.+.+++... | |...|..+-..+.+.++.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~--------------P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD--------------PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC--------------SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC--------------CCCccHHHHHHHHHhcCCCccc
Confidence 55789999999999854 6 67888877777777666433
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.95 E-value=0.00019 Score=55.69 Aligned_cols=93 Identities=17% Similarity=0.076 Sum_probs=62.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC------c-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCC
Q 048235 167 LARCLCSAGKCEEALMQMDKICKVANKP------L-----VVSYTGLIQACLDSGNIQNAAYIFNQMKNF-------CSP 228 (455)
Q Consensus 167 l~~~~~~~g~~~~a~~~~~~m~~~~~~~------~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~ 228 (455)
....+.+.|++++|+..|++..+..+.. + ...|..+..++.+.|++++|+..+++..+. .+.
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 4444445555555555555554433220 1 236777777777778887777777777665 555
Q ss_pred CHHHH----HHHHHHHHhcCChhHHHHHHHHHHhc
Q 048235 229 NLVTC----NIMVKAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 229 ~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
+...| .....++...|++++|+..|++.++.
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 66777 88888888889999999888888774
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.84 E-value=7.3e-05 Score=70.51 Aligned_cols=131 Identities=6% Similarity=-0.098 Sum_probs=90.6
Q ss_pred HHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-C
Q 048235 16 TLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ-----GQ-K 89 (455)
Q Consensus 16 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~ 89 (455)
.+-..|++++|+.++++.... ..+++....+....+++.|...|...|++++|..++++..+. |. .
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~--------~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEK--------QEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHH--------HTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHhCCCHHHHHHHHHHHHHH--------HHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 355789999999999988742 112222333334578999999999999999999999887652 21 1
Q ss_pred C-CHhhHHHHHHHHHHcCChhHHHHHHHHHHh-----cCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048235 90 P-SATTYGLVMEVMLACGKYNLVYEFFRKVQK-----SYIP---NALAYKVLVNTLWREGKTDEAVSAVEDMER 154 (455)
Q Consensus 90 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 154 (455)
| ...+++.|...|...|++++|+.++++... .|+. ...+.+.+-.++...+.+++|..+|..+.+
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 356677778888888888888888877643 2332 223445566667777777777777777765
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00016 Score=52.65 Aligned_cols=66 Identities=14% Similarity=0.120 Sum_probs=51.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 195 LVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 195 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
+...+..+...+...|++++|...|++..+..+.+...|..+..++...|++++|...+++.++..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 455667777778888888888888888777666777788888888888888888888888887743
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.77 E-value=0.00018 Score=53.01 Aligned_cols=78 Identities=12% Similarity=0.084 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHH
Q 048235 215 AAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWD 294 (455)
Q Consensus 215 a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 294 (455)
|...|++..+..+.+...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|+++
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------p~~~~~~~~la~~~~~~g~~~ 70 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-------------PTYSVAWKWLGKTLQGQGDRA 70 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-------------CCcHHHHHHHHHHHHHcCCHH
Confidence 3444444444444455555555555555555555555555555532 113445555555555555555
Q ss_pred HHHHHHHHHHH
Q 048235 295 DLELVYKRMLH 305 (455)
Q Consensus 295 ~a~~~~~~m~~ 305 (455)
+|...|++..+
T Consensus 71 ~A~~~~~~al~ 81 (115)
T 2kat_A 71 GARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.76 E-value=7.3e-05 Score=57.96 Aligned_cols=97 Identities=10% Similarity=-0.014 Sum_probs=74.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhcccccchhhccCCCCCC-c
Q 048235 208 DSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGL----------FEEAMKLFQEMAEDSNHINREYDKKGLVIP-D 276 (455)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~ 276 (455)
+.+.+++|.+.++...+..+.+...|+.+..++...++ +++|+..|++.++.. | +
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--------------P~~ 79 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--------------PKK 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--------------TTC
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--------------cCc
Confidence 44557777777777777677777788777777777665 459999999999954 6 6
Q ss_pred HHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048235 277 IYTFNTMLDACAAEK-----------RWDDLELVYKRMLHHGLHFNAKRHLRMIL 320 (455)
Q Consensus 277 ~~~~~~li~~~~~~~-----------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 320 (455)
...|..+..+|...| ++++|.+.|++.++ +.|+...|...+.
T Consensus 80 ~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 80 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 789999999998875 78899999998888 5576655544443
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.76 E-value=0.00027 Score=52.11 Aligned_cols=66 Identities=6% Similarity=0.048 Sum_probs=45.2
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 048235 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 120 (455)
+.+...|..+...+...|++++|...|++..+.... +...+..+..++...|+++.|...|++...
T Consensus 16 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 16 TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445667777777777777777777777777765433 455666666777777777777777776654
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.75 E-value=0.0004 Score=48.36 Aligned_cols=82 Identities=17% Similarity=0.159 Sum_probs=52.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 048235 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNT 135 (455)
Q Consensus 56 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 135 (455)
+...|..+...+...|++++|...|++..+.... +...+..+..++.+.|++++|...|++.....+.+..++..+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3456666667777777777777777777665332 455666666666677777777777776666555556666655555
Q ss_pred HHh
Q 048235 136 LWR 138 (455)
Q Consensus 136 ~~~ 138 (455)
+.+
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00017 Score=52.50 Aligned_cols=90 Identities=11% Similarity=0.061 Sum_probs=53.3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC------HHHH
Q 048235 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPN------ALAY 129 (455)
Q Consensus 56 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~ 129 (455)
+...|..+...+...|++++|...|++..+.... +...+..+..++.+.|++++|...+++.....+.+ ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4455666666666777777777777766665332 45566666666666666666666666666554433 4444
Q ss_pred HHHHHHHHhcCChHHHH
Q 048235 130 KVLVNTLWREGKTDEAV 146 (455)
Q Consensus 130 ~~li~~~~~~g~~~~a~ 146 (455)
..+..++...|+.+.|.
T Consensus 82 ~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHhHhhhH
Confidence 44455555545444443
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.72 E-value=0.00072 Score=63.74 Aligned_cols=130 Identities=9% Similarity=-0.074 Sum_probs=96.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC---CCC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC----CHHHHH
Q 048235 170 CLCSAGKCEEALMQMDKICKVA---NKP----LVVSYTGLIQACLDSGNIQNAAYIFNQMKNF----CSP----NLVTCN 234 (455)
Q Consensus 170 ~~~~~g~~~~a~~~~~~m~~~~---~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~----~~~~~~ 234 (455)
.+...|++++|+.++++..+.. ..+ ...+++.|..+|...|++++|..++++..+. ..| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557899999999998876531 112 2567899999999999999999999987542 233 355788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD-IYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 235 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
.|...|...|++++|..++++.++.-. ...+.-.|+ ..+.+.+-.++...+.+++|+.++.++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~------~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILL------VTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH------HHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH------HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998875320 011113453 34555666778888889999999988876
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.72 E-value=0.0013 Score=50.39 Aligned_cols=111 Identities=12% Similarity=0.054 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCChhHHH
Q 048235 175 GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLE----HGLFEEAM 250 (455)
Q Consensus 175 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~ 250 (455)
+++++|...|++..+.|. |+.. |...|...+.+++|.+.|++..+. -+...+..|...|.. .+++++|.
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 355666666666666652 2222 555555555666666666665442 445555556666655 56666666
Q ss_pred HHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 048235 251 KLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAA----EKRWDDLELVYKRMLHHG 307 (455)
Q Consensus 251 ~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~ 307 (455)
++|++..+.| +...+..|...|.. .++.++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---------------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666544 44455555555555 566666666666666654
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.69 E-value=0.00076 Score=46.88 Aligned_cols=64 Identities=19% Similarity=0.274 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048235 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 196 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
...+..+...+...|++++|...|++..+..+.+...+..+..++...|++++|...|++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455556666666666666666666665555555666666666666777777777777766664
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.68 E-value=0.0021 Score=49.13 Aligned_cols=111 Identities=12% Similarity=0.038 Sum_probs=68.9
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCCHHHH
Q 048235 140 GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLD----SGNIQNA 215 (455)
Q Consensus 140 g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a 215 (455)
+++++|++.|++..+.| .+... |...|...+..++|...|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45666777777666665 22222 5555555566666777776666654 45556666666666 5667777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcc
Q 048235 216 AYIFNQMKNFCSPNLVTCNIMVKAYLE----HGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~ 260 (455)
...|++..+. -+...+..|...|.. .+++++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777666542 455566666666666 666777777777766655
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.60 E-value=0.00023 Score=55.16 Aligned_cols=98 Identities=17% Similarity=0.108 Sum_probs=68.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 048235 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN----------IQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEH 243 (455)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 243 (455)
.+.+++|...++...+..+. +...|..+..++...++ +++|+..|++..+..+.+...|..+..+|...
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 34455666666666555433 55555555555555544 45888888888777777788888888888876
Q ss_pred -----------CChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHH
Q 048235 244 -----------GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDA 286 (455)
Q Consensus 244 -----------~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 286 (455)
|++++|.+.|++.++. .|+...|...+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--------------~P~~~~y~~al~~ 133 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--------------QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--------------CTTCHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--------------CCCCHHHHHHHHH
Confidence 4899999999999995 4877666555543
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.52 E-value=0.00072 Score=48.34 Aligned_cols=66 Identities=9% Similarity=0.070 Sum_probs=45.6
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 048235 54 EPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQK 120 (455)
Q Consensus 54 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 120 (455)
+.+...|..+...|...|++++|+..|++..+.... +...|..+..+|...|++++|.+.|++...
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345667777777777777777777777777776433 455666677777777777777777776654
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.50 E-value=0.00078 Score=48.16 Aligned_cols=65 Identities=17% Similarity=0.112 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048235 195 LVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 195 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
+...+..+...|...|++++|...|++..+..+.+...|..+..+|...|++++|.+.|++.++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45566667777777777777777777776655666667777777777777777777777776653
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.26 E-value=0.0074 Score=53.77 Aligned_cols=65 Identities=8% Similarity=0.015 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 227 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--------------~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--------------MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3344444444444444455555555555544432 4444444444444444555555555544444
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.21 E-value=0.017 Score=58.57 Aligned_cols=77 Identities=19% Similarity=0.162 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 048235 165 YDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHG 244 (455)
Q Consensus 165 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 244 (455)
..++..+.+.|..++|+++.+. |. . -.......|+++.|.++.+.+ .+...|..+...+.+.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------~~-~----~f~~~l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------QD-Q----KFELALKVGQLTLARDLLTDE-----SAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------HH-H----HHHHHHHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCChHHheecCCC-------cc-h----heehhhhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcC
Confidence 4455555666666666654421 10 0 122334566666666665443 45566777777777777
Q ss_pred ChhHHHHHHHHHHh
Q 048235 245 LFEEAMKLFQEMAE 258 (455)
Q Consensus 245 ~~~~a~~~~~~m~~ 258 (455)
+++.|.+.|.++..
T Consensus 696 ~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 696 NFKLAIEAFTNAHD 709 (814)
T ss_dssp CHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHccC
Confidence 77777777666543
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.06 E-value=0.032 Score=49.69 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=56.5
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 193 KPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 193 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
+.+..+|..+...+...|+++.|...+++..... |+...|..+...+...|++++|.+.|++....+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 4567888888777777899999999999987754 788888888888999999999999999998854
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.83 E-value=0.0031 Score=44.63 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=30.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 048235 169 RCLCSAGKCEEALMQMDKICKVANKPLVV-SYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNL 230 (455)
Q Consensus 169 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 230 (455)
..+...|++++|...+++..+.... +.. .+..+..+|...|++++|...|++..+..+.+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 3444455555555555555544322 334 455555555555555555555555544333333
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.79 E-value=0.0055 Score=56.79 Aligned_cols=99 Identities=14% Similarity=0.114 Sum_probs=68.7
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C
Q 048235 13 IAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ-----G 87 (455)
Q Consensus 13 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~ 87 (455)
.+..+.+.|++++|+.++++..... ..++....+....+++.|..+|...|++++|+.++++...- |
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~--------~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg 364 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSN--------SERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP 364 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCS--------SCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhc--------cCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC
Confidence 4556778899999999999987531 11222222334568899999999999999999999887652 2
Q ss_pred C-CC-CHhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 048235 88 Q-KP-SATTYGLVMEVMLACGKYNLVYEFFRKVQ 119 (455)
Q Consensus 88 ~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 119 (455)
. .| ...+++.|...|...|++++|+.++++..
T Consensus 365 ~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 365 GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1 12 24556667777777777777777777654
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.77 E-value=0.0038 Score=44.14 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=26.4
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048235 102 MLACGKYNLVYEFFRKVQKSYIPNAL-AYKVLVNTLWREGKTDEAVSAVEDMERR 155 (455)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 155 (455)
+.+.|+++.|...|+++....+.+.. .+..+..+|...|++++|+..|++..+.
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34445555555555554444444444 4444555555555555555555554444
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.76 E-value=0.0036 Score=57.97 Aligned_cols=93 Identities=11% Similarity=0.119 Sum_probs=59.7
Q ss_pred hcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CC-C
Q 048235 19 QAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQ-----GQ-KP-S 91 (455)
Q Consensus 19 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~p-~ 91 (455)
..|++++|+.++++.... ..+++....+.-..+++.|..+|...|++++|..++++..+- |. .| .
T Consensus 310 ~~g~~~eA~~~~~~~L~i--------~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 381 (433)
T 3qww_A 310 HYKSPSELLEICELSQEK--------MSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNV 381 (433)
T ss_dssp TTSCHHHHHHHHHHHHHH--------HTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred hccCHHHHHHHHHHHHHH--------hhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 357888888888887642 112222222333467888888888888888888888887652 21 12 2
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 048235 92 ATTYGLVMEVMLACGKYNLVYEFFRKVQ 119 (455)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 119 (455)
..+++.|...|...|++++|+.++++..
T Consensus 382 a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 382 ASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4456666666777777777777666654
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.72 E-value=0.017 Score=53.49 Aligned_cols=87 Identities=8% Similarity=-0.087 Sum_probs=68.8
Q ss_pred hcCCHHHHHHHHHHHHHc---CCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC----CHHHHHHHH
Q 048235 173 SAGKCEEALMQMDKICKV---ANKPL----VVSYTGLIQACLDSGNIQNAAYIFNQMKNF----CSP----NLVTCNIMV 237 (455)
Q Consensus 173 ~~g~~~~a~~~~~~m~~~---~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~----~~~~~~~li 237 (455)
..|++++|+.++++.... -+.|+ ..+++.|..+|...|++++|..++++..+. ..| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999887653 12222 567899999999999999999999987542 222 245689999
Q ss_pred HHHHhcCChhHHHHHHHHHHhc
Q 048235 238 KAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
..|...|++++|..++++.++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999998763
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.68 E-value=0.062 Score=54.41 Aligned_cols=131 Identities=13% Similarity=0.127 Sum_probs=87.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 048235 60 YNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWRE 139 (455)
Q Consensus 60 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 139 (455)
...++..+.+.|.++.|+++.++-. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE-----SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHc
Confidence 3777788888888888887663211 1133456789999998875443 5678899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048235 140 GKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIF 219 (455)
Q Consensus 140 g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 219 (455)
|+++.|.+.|..+.+ |..+...+...|+.+....+-+.....|- ++....+|.+.|++++|.+++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 999999999987632 34455555667777776666555555441 233344455666777666665
Q ss_pred HHH
Q 048235 220 NQM 222 (455)
Q Consensus 220 ~~~ 222 (455)
.++
T Consensus 760 ~~~ 762 (814)
T 3mkq_A 760 IKS 762 (814)
T ss_dssp HHT
T ss_pred HHc
Confidence 544
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.64 E-value=0.041 Score=50.91 Aligned_cols=98 Identities=10% Similarity=-0.063 Sum_probs=75.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCC
Q 048235 202 LIQACLDSGNIQNAAYIFNQMKNF----CSPN----LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLV 273 (455)
Q Consensus 202 li~~~~~~~~~~~a~~~~~~~~~~----~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 273 (455)
.+..+.+.|++++|..++++..+. ..|+ ..+++.+..+|...|++++|..++++++..-. ..-+..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~------~~lg~~ 366 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYR------IFFPGS 366 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH------HHSCSS
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHH------HHcCCC
Confidence 355566789999999999988643 3332 56788999999999999999999998875420 011124
Q ss_pred CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048235 274 IPD-IYTFNTMLDACAAEKRWDDLELVYKRMLH 305 (455)
Q Consensus 274 ~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 305 (455)
.|+ ..+++.|...|...|++++|..++++..+
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 454 46789999999999999999999998875
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.58 E-value=0.017 Score=40.42 Aligned_cols=67 Identities=7% Similarity=0.061 Sum_probs=52.6
Q ss_pred CcHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 194 PLVVSYTGLIQACLDSGN---IQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 194 ~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
.+...+..+..++...++ .++|...+++..+..+.++.....+...+.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 456666677777654444 6888888888888778888888888888888888888888888888864
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.38 E-value=0.33 Score=41.57 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhcccccchhhccCCCCCC--cHHHHHH
Q 048235 212 IQNAAYIFNQMKNFCSP--NLVTCNIMVKAYLEH-----GLFEEAMKLFQEMAEDSNHINREYDKKGLVIP--DIYTFNT 282 (455)
Q Consensus 212 ~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p--~~~~~~~ 282 (455)
...|...+++..+..+. +-..|..+...|... |+.++|.+.|++.++.+ | +..++..
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln--------------P~~~id~~v~ 244 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC--------------SAHDPDHHIT 244 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--------------CTTCSHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--------------CCCCchHHHH
Confidence 45566666666554333 366899999999884 99999999999999955 6 3778888
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHcCCC--CCHH
Q 048235 283 MLDACAAE-KRWDDLELVYKRMLHHGLH--FNAK 313 (455)
Q Consensus 283 li~~~~~~-~~~~~a~~~~~~m~~~~~~--p~~~ 313 (455)
....++.. |+.+++.+.+++.+..... |+..
T Consensus 245 YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 245 YADALCIPLNNRAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChh
Confidence 88888884 9999999999999996665 6543
No 221
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.35 E-value=0.2 Score=37.08 Aligned_cols=140 Identities=17% Similarity=0.142 Sum_probs=89.4
Q ss_pred HhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 048235 18 GQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGL 97 (455)
Q Consensus 18 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 97 (455)
.-.|.+++..++..+... +.+..-||.+|--....-+-+-..++++..-+. + |
T Consensus 18 ildG~v~qGveii~k~~~------------------ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--D------ 70 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITK------------------SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--D------ 70 (172)
T ss_dssp HHTTCHHHHHHHHHHHHH------------------HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--C------
T ss_pred HHhhhHHHHHHHHHHHcC------------------CCCccccceeeeecchhhchhHHHHHHHHHhhh-c--C------
Confidence 345666666666666554 344555565555555555555444444443221 1 1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048235 98 VMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKC 177 (455)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 177 (455)
...+|++..+...+-.+. .+...+...++.+...|.-++-.+++..+.. +.+|++.....+..+|.+.|+.
T Consensus 71 ----is~C~NlKrVi~C~~~~n----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~ 141 (172)
T 1wy6_A 71 ----LDKCQNLKSVVECGVINN----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDE 141 (172)
T ss_dssp ----GGGCSCTHHHHHHHHHTT----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCH
T ss_pred ----cHhhhcHHHHHHHHHHhc----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcch
Confidence 125666666666655443 2556677777888888888888888888544 3466777777888888888888
Q ss_pred HHHHHHHHHHHHcCCC
Q 048235 178 EEALMQMDKICKVANK 193 (455)
Q Consensus 178 ~~a~~~~~~m~~~~~~ 193 (455)
.++.+++.+..+.|++
T Consensus 142 r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 142 RDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHhhhH
Confidence 8888888888888864
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.18 Score=39.60 Aligned_cols=27 Identities=30% Similarity=0.488 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048235 196 VVSYTGLIQACLDSGNIQNAAYIFNQM 222 (455)
Q Consensus 196 ~~~~~~li~~~~~~~~~~~a~~~~~~~ 222 (455)
...|..|.......|+++-|.+.|.+.
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 334444444444444444444444333
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.24 E-value=0.069 Score=37.19 Aligned_cols=48 Identities=13% Similarity=0.017 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048235 108 YNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERR 155 (455)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 155 (455)
.++|..++++.....+.+..+...+...+.+.|++++|+..|+++.+.
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555555554444444555555555555555555555555555444
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.28 Score=38.53 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=29.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048235 135 TLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKIC 188 (455)
Q Consensus 135 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 188 (455)
...+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|....
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 344566777776665544 345666677777667777777666665443
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.14 E-value=0.12 Score=39.51 Aligned_cols=71 Identities=10% Similarity=-0.055 Sum_probs=37.6
Q ss_pred CcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 048235 275 PDIYTFNTMLDACAAEK---RWDDLELVYKRMLHHGLHF--NAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346 (455)
Q Consensus 275 p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 346 (455)
++..+...+..++++.+ ++++++.+|+...+.+ .| ....+..+..++.+.|++++|.++++.+++..|.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN 105 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 45555555555555555 4445666666555533 12 123344444455666666666666666665554443
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.07 E-value=0.1 Score=39.93 Aligned_cols=82 Identities=10% Similarity=0.033 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHhhcC-CCCChHhHHHHHHHHhhccchHHHHH
Q 048235 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAG---KVELLEITWEHLARAD-RITPPALIKERFCNRLENKDYGSAIS 368 (455)
Q Consensus 293 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~ 368 (455)
...+.+-|.+..+.|. ++..+...+..++.+.+ +++++..+++.+.+.+ +.....-+..+.....+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4556667777766554 67888888999999988 6779999999998876 21111222333344469999999999
Q ss_pred HhhhcCC
Q 048235 369 CLVSHPV 375 (455)
Q Consensus 369 ~~~~~~~ 375 (455)
+++....
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.03 E-value=0.28 Score=37.08 Aligned_cols=104 Identities=12% Similarity=0.054 Sum_probs=74.3
Q ss_pred CCCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHhcccccchhhccCCCCCCcH--------HHHHHHHHHHHHcCC
Q 048235 227 SPNLVTCNIMVKAYLEHGLF------EEAMKLFQEMAEDSNHINREYDKKGLVIPDI--------YTFNTMLDACAAEKR 292 (455)
Q Consensus 227 ~~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~--------~~~~~li~~~~~~~~ 292 (455)
+.|..+|-..+...-+.|+. ++..++|++.... ++|+. ..|-... .+...++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-------------~Pp~k~~~wrrYI~LWIrYA-~~~ei~D 75 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-------------LPPDKYGQNESFARIQVRFA-ELKAIQE 75 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-------------SCGGGGTTCHHHHHHHHHHH-HHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-------------CCccccccHHHHHHHHHHHH-HHHHhcC
Confidence 46777888888888888888 8888999988875 44532 1111111 2234589
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 048235 293 WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRIT 345 (455)
Q Consensus 293 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 345 (455)
.++|.++|+.+++.+-+. ...|.....--.+.|+++.|.+++......++.+
T Consensus 76 ~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 76 PDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp GGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 999999999998853333 5555555555589999999999999999877654
No 228
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.95 E-value=1 Score=41.73 Aligned_cols=263 Identities=13% Similarity=0.111 Sum_probs=156.6
Q ss_pred CCHHHHHHHHHHHHHc-----CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH----HhcCC
Q 048235 71 KQWEGAFWVLQQLKQQ-----GQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTL----WREGK 141 (455)
Q Consensus 71 ~~~~~a~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~ 141 (455)
++++.|++.+-.+.+. +..-+......++..|...++++...+.+..+.........+...++..+ .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6788888877666542 23445666788899999999999998888777654332233333444333 23333
Q ss_pred hHHHH--HHHHHHHH--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-c----HHHHHHHHHHHHh
Q 048235 142 TDEAV--SAVEDMER--RG-IVG---SAALYYDLARCLCSAGKCEEALMQMDKICKVANKP-L----VVSYTGLIQACLD 208 (455)
Q Consensus 142 ~~~a~--~~~~~m~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~-~----~~~~~~li~~~~~ 208 (455)
.+... .+.+.... .| +-. .......|...+...|++.+|.+++..+...-... + ...+...++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 33221 12111110 11 111 12233558888899999999999999986432211 2 4567888899999
Q ss_pred cCCHHHHHHHHHHHHhc---CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHH
Q 048235 209 SGNIQNAAYIFNQMKNF---CSPN----LVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFN 281 (455)
Q Consensus 209 ~~~~~~a~~~~~~~~~~---~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~ 281 (455)
.+++..|..+++++... ..++ ...+..++..+...+++.+|.+.|.++..... ..-|...+.
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~-----------~~~d~~~~~ 258 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDA-----------IKSDEAKWK 258 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-----------HHSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc-----------ccCCHHHHH
Confidence 99999999999987532 2232 23467778888889999999998888765320 111332222
Q ss_pred H----HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHhhcCCC
Q 048235 282 T----MLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRA--GKVELLEITWEHLARADRI 344 (455)
Q Consensus 282 ~----li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~ 344 (455)
. ++....-.+....-..++.........++...|..++.+|... .+++...+.|......++.
T Consensus 259 ~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~ 327 (445)
T 4b4t_P 259 PVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDL 327 (445)
T ss_dssp HHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCS
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccch
Confidence 2 2222222222222333444433322334566888888888543 4567777777665554433
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.94 E-value=0.14 Score=36.41 Aligned_cols=60 Identities=12% Similarity=0.186 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048235 165 YDLARCLCSAGKCEEALMQMDKICKVA------NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKN 224 (455)
Q Consensus 165 ~~l~~~~~~~g~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 224 (455)
..|...+...|++..|...|+...+.. ..+...++..|..++.+.|+++.|...+++..+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334444444444444444444433210 112344445555555555555555555555544
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.91 E-value=0.11 Score=36.94 Aligned_cols=70 Identities=6% Similarity=-0.060 Sum_probs=34.6
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 048235 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQG------QKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPN 125 (455)
Q Consensus 56 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 125 (455)
+..-+..|...+.+.++++.|...|+...+.- -.+....+..+..++.+.|+++.|...++++....|.+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 34444555566666666666666665554421 01133444444455555555555555555554443333
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.35 E-value=0.58 Score=34.64 Aligned_cols=67 Identities=9% Similarity=-0.015 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048235 229 NLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGL 308 (455)
Q Consensus 229 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 308 (455)
+.......+......|.-++-.+++..+... ..|++...-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-------------~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-------------NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---------------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-------------CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3444455556666666666666666664332 345666666666667777776666666666666665
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.22 E-value=0.15 Score=43.63 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHhcCCC--CHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHH
Q 048235 109 NLVYEFFRKVQKSYIP--NALAYKVLVNTLWR-----EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA-GKCEEA 180 (455)
Q Consensus 109 ~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-g~~~~a 180 (455)
..|...+++..+..+. +...|..+...|.+ .|+.++|.+.|++.++.+..-+..++......++.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4567777777766653 56788888888888 488999999999888876332355666677888774 888999
Q ss_pred HHHHHHHHHcCCC--CcHHHHHHH
Q 048235 181 LMQMDKICKVANK--PLVVSYTGL 202 (455)
Q Consensus 181 ~~~~~~m~~~~~~--~~~~~~~~l 202 (455)
.+.+++....... |+....+.+
T Consensus 260 ~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 260 DEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999888887766 665444433
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.44 E-value=0.73 Score=34.87 Aligned_cols=114 Identities=11% Similarity=0.024 Sum_probs=71.0
Q ss_pred CCHhhHHHHHHHHHhcCCh------hHHHHHHHHhhcCCccccccccccccCCCCCCCH-hHHHHHHHH------HHhcC
Q 048235 5 PDTVAYRSIAVTLGQAGHI------KELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDI-VVYNAVLNA------CVRRK 71 (455)
Q Consensus 5 p~~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~------~~~~~ 71 (455)
-|..+|-..+..+-+.|+. ++.+++|++... ..+|+. ..|...|.. +...+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia----------------~~Pp~k~~~wrrYI~LWIrYA~~~ei~ 74 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE----------------ALPPDKYGQNESFARIQVRFAELKAIQ 74 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH----------------HSCGGGGTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH----------------cCCccccccHHHHHHHHHHHHHHHHhc
Confidence 4567788888888888999 888899998874 334442 122222221 12336
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 048235 72 QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNT 135 (455)
Q Consensus 72 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 135 (455)
+.++|.++|+.+++.+-.- ...|......-.+.|++..|.+++.+....++.+.....+.+.-
T Consensus 75 D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~n 137 (161)
T 4h7y_A 75 EPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRN 137 (161)
T ss_dssp CGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHh
Confidence 7777777777776652222 44555555555677777777777777766666555555555544
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.24 E-value=0.00025 Score=64.55 Aligned_cols=211 Identities=14% Similarity=0.121 Sum_probs=120.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048235 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQ 88 (455)
Q Consensus 9 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 88 (455)
.|..+..+..+.|++.+|++.|=+ ..|+..|..+|.+..+.|.+++-...+...++. .
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIk---------------------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ 113 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIK---------------------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-A 113 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCC---------------------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-C
T ss_pred HHHHHHHHHHccCchHHHHHHHHh---------------------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-h
Confidence 455666777777777777664422 346666777777777778777777766555544 2
Q ss_pred CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------------
Q 048235 89 KPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERR------------- 155 (455)
Q Consensus 89 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------- 155 (455)
+ +...=+.|+-+|++.+++.+.++++. .|+..-...+.+-|...|.++.|.-+|..+-.-
T Consensus 114 k-e~~IDteLi~ayAk~~rL~elEefl~------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~y 186 (624)
T 3lvg_A 114 R-ESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEY 186 (624)
T ss_dssp C-STTTTHHHHHHHHTSCSSSTTTSTTS------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGG
T ss_pred c-ccccHHHHHHHHHhhCcHHHHHHHHc------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 2 44445567777777777665443321 134444445555555556665555555432110
Q ss_pred -------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 048235 156 -------GIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP 228 (455)
Q Consensus 156 -------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 228 (455)
.-..++.||..+..+|...+.+.-|.-.--.+.-. || -...++..|-+.|.+++-+.+++.-...-..
T Consensus 187 q~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglErA 261 (624)
T 3lvg_A 187 QAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLERA 261 (624)
T ss_dssp GSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTC
T ss_pred HHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCch
Confidence 01124456666667777766665553332222211 11 1123556666777777777777776544567
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHH
Q 048235 229 NLVTCNIMVKAYLEHGLFEEAMKLFQ 254 (455)
Q Consensus 229 ~~~~~~~li~~~~~~~~~~~a~~~~~ 254 (455)
....|+-|.-.|++- ++++.++.++
T Consensus 262 HmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 262 HMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp CHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 777888887777765 3444444443
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.02 E-value=0.59 Score=34.31 Aligned_cols=90 Identities=12% Similarity=-0.031 Sum_probs=63.8
Q ss_pred CChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcCCCC--CHHHHHHH
Q 048235 244 GLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDD---LELVYKRMLHHGLHF--NAKRHLRM 318 (455)
Q Consensus 244 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~p--~~~~~~~l 318 (455)
.....+.+-|.+....| .|+..+-..+..++.+..+... ++.+++...+.+ .| .......+
T Consensus 15 ~~l~~~~~~y~~e~~~~-------------~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~L 80 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-------------SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYL 80 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-------------CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-------------CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHH
Confidence 34455566666665555 3677776677778888776655 888888887754 23 23345556
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCCh
Q 048235 319 ILDASRAGKVELLEITWEHLARADRITPP 347 (455)
Q Consensus 319 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 347 (455)
..++.+.|++++|.+.++.+++..|..+.
T Consensus 81 Avg~yklg~Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 81 AVGNYRLKEYEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence 67789999999999999999988876654
No 236
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.92 E-value=0.58 Score=32.45 Aligned_cols=64 Identities=8% Similarity=0.027 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 048235 72 QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNT 135 (455)
Q Consensus 72 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 135 (455)
+.=+..+-++.+....+.|+.....+.+++|.+.+++..|.++|+.++........+|..++.-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 4456777888888888999999999999999999999999999999987766555667766653
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.87 E-value=0.81 Score=33.56 Aligned_cols=89 Identities=10% Similarity=0.035 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCC-CcHHHHHHHHHHHHhcCCHHHHHH
Q 048235 142 TDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEE---ALMQMDKICKVANK-PLVVSYTGLIQACLDSGNIQNAAY 217 (455)
Q Consensus 142 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~ 217 (455)
+..+.+-|.+....|. ++..+-..+..++.++..... ++.+++.+.+.+.+ -.....-.|.-++.+.|+++.|.+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344444444444442 455554556666666665555 66666666554311 122233345556667777777777
Q ss_pred HHHHHHhcCCCCHH
Q 048235 218 IFNQMKNFCSPNLV 231 (455)
Q Consensus 218 ~~~~~~~~~~~~~~ 231 (455)
.++.+.+..|.|..
T Consensus 96 ~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHCTTCHH
T ss_pred HHHHHHHhCCCCHH
Confidence 77777654444433
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.74 E-value=6.6 Score=39.79 Aligned_cols=181 Identities=10% Similarity=0.065 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHH--HHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHH--HHHhcCChHHHHHHH
Q 048235 74 EGAFWVLQQLKQQGQKPSATTYG--LVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVN--TLWREGKTDEAVSAV 149 (455)
Q Consensus 74 ~~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~ 149 (455)
+++.+.+..+....- +...... ++...+.-.|+-+....++..+.... +..+...+.- ++...|+.+.+..++
T Consensus 471 eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g~~e~~~~li 547 (963)
T 4ady_A 471 IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYGRQELADDLI 547 (963)
T ss_dssp HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTCGGGGHHHH
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCCChHHHHHHH
Confidence 455666666655321 1111111 22223445677777777777766532 3333333444 444679999999998
Q ss_pred HHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048235 150 EDMERRGIVGSAA--LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCS 227 (455)
Q Consensus 150 ~~m~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 227 (455)
+.+.... .|... ...++.-+|+..|+.....++++.+.... ..++.....+.-++...|+.+.+.++++.+.+...
T Consensus 548 ~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d 625 (963)
T 4ady_A 548 TKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHN 625 (963)
T ss_dssp HHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSC
T ss_pred HHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCC
Confidence 8887642 22222 12235556778899888888988887653 22343333444445557777778888877766555
Q ss_pred CCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhc
Q 048235 228 PNLVTCNIMVKAYLEHGLF-EEAMKLFQEMAED 259 (455)
Q Consensus 228 ~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~ 259 (455)
|.+..-.++.-+....|.. .++.+++..+...
T Consensus 626 ~~VR~gAalALGli~aGn~~~~aid~L~~L~~D 658 (963)
T 4ady_A 626 AHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD 658 (963)
T ss_dssp HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC
Confidence 6555555555555555554 5788899998764
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.38 E-value=0.75 Score=45.43 Aligned_cols=54 Identities=13% Similarity=0.179 Sum_probs=39.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 048235 203 IQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEM 256 (455)
Q Consensus 203 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 256 (455)
...+...|+++.|+++-++.....|.+-.+|..|..+|...|+++.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344556777888888777776666667777888888888888888887776665
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.20 E-value=1.3 Score=30.80 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048235 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVK 238 (455)
Q Consensus 176 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 238 (455)
+.-+..+-++.+.....-|++.+..+.+++|.+.+++..|.++|+.++..+.+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 556666777777777777888888888888888888888888888887665444455655543
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.72 E-value=9.5 Score=38.70 Aligned_cols=171 Identities=9% Similarity=0.024 Sum_probs=97.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHH--HHHHHHHHhcCC
Q 048235 134 NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSY--TGLIQACLDSGN 211 (455)
Q Consensus 134 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~~~ 211 (455)
..+.-.|+-+-...++..+.+.. .-+..-...+.-++...|+.+.+..+++.+.... .|....- .++.-+|+..|+
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 34456677777777777666532 1112222233344446788888888888777642 2222222 234456777888
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcC
Q 048235 212 IQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEK 291 (455)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 291 (455)
.....++++.+......++.....+.-++...|+.+.+.+++..+.+.+ .|....-..+.-+....|
T Consensus 576 ~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-------------d~~VR~gAalALGli~aG 642 (963)
T 4ady_A 576 NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-------------NAHVRCGTAFALGIACAG 642 (963)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-------------CHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-------------CHHHHHHHHHHHHHhccC
Confidence 8887778888876544444444444445556777777777776666543 344443333334444444
Q ss_pred CH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048235 292 RW-DDLELVYKRMLHHGLHFNAKRHLRMILDA 322 (455)
Q Consensus 292 ~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 322 (455)
.. .++..++..+... +|..+-..-+.++
T Consensus 643 n~~~~aid~L~~L~~D---~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 643 KGLQSAIDVLDPLTKD---PVDFVRQAAMIAL 671 (963)
T ss_dssp SCCHHHHHHHHHHHTC---SSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHccC---CCHHHHHHHHHHH
Confidence 43 5677888887653 3444433333343
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.46 E-value=0.66 Score=42.16 Aligned_cols=128 Identities=13% Similarity=0.077 Sum_probs=74.1
Q ss_pred CCCHhHHHHHHHHHH---hcCCHHHHHHHHHHHHHc--CCC-CCHhhHHHHHHHHHHcCChh-HHHHHHHHHHhcCCCCH
Q 048235 54 EPDIVVYNAVLNACV---RRKQWEGAFWVLQQLKQQ--GQK-PSATTYGLVMEVMLACGKYN-LVYEFFRKVQKSYIPNA 126 (455)
Q Consensus 54 ~~~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~--~~~-p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~ 126 (455)
.-|...|..++.... ..|+.+.|...+.+.... |.. ++... ..+- ....-+++.. .
T Consensus 109 ~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~-----------~~w~~~~r~~l~~~~------~ 171 (388)
T 2ff4_A 109 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-----------FQFVEPFATALVEDK------V 171 (388)
T ss_dssp GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-----------STTHHHHHHHHHHHH------H
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCc-----------hhHHHHHHHHHHHHH------H
Confidence 345566666665433 358888898888888763 322 22110 0111 1111112211 1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCcHHHH
Q 048235 127 LAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICK-----VANKPLVVSY 199 (455)
Q Consensus 127 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~ 199 (455)
.+...++..+...|++++++..+..+.... +.+...+..+|.++...|+..+|++.|+.+.+ .|+.|+..+-
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 234455666677777777777777776653 44566677777777777777777777776533 4777765553
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.33 E-value=1.2 Score=44.02 Aligned_cols=128 Identities=13% Similarity=0.117 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHHHHh-------cCCC-CHH
Q 048235 162 ALYYDLARCLCSAGK-CEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN-IQNAAYIFNQMKN-------FCSP-NLV 231 (455)
Q Consensus 162 ~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~-------~~~~-~~~ 231 (455)
+....++..+...++ .+.|..+++++.......+......++..+...++ --+|.+++.+..+ ..++ +..
T Consensus 249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 334556666666666 57788888888776533222222333333333221 2234444443321 1111 111
Q ss_pred ----------HHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHH
Q 048235 232 ----------TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP-DIYTFNTMLDACAAEKRWDDLELVY 300 (455)
Q Consensus 232 ----------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~ 300 (455)
....=...+...|+++-|+++-++.... .| +-.+|..|..+|...|+++.|+-.+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------------aPseF~tW~~La~vYi~l~d~e~ALLtL 394 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------------ALDSFESWYNLARCHIKKEEYEKALFAI 394 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------CSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------------CchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence 1112234456789999999999999885 47 5789999999999999999999999
Q ss_pred HHH
Q 048235 301 KRM 303 (455)
Q Consensus 301 ~~m 303 (455)
+.+
T Consensus 395 NSc 397 (754)
T 4gns_B 395 NSM 397 (754)
T ss_dssp HHS
T ss_pred hcC
Confidence 887
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.27 E-value=13 Score=39.19 Aligned_cols=52 Identities=12% Similarity=0.052 Sum_probs=28.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048235 131 VLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKI 187 (455)
Q Consensus 131 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 187 (455)
.++..+...+..+.+.++... .+.++.....+..+|...|++++|...|.+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344455555666555443322 1223333344666677777777777777653
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.21 E-value=1.3 Score=34.21 Aligned_cols=105 Identities=10% Similarity=-0.042 Sum_probs=68.0
Q ss_pred CCCcHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 048235 273 VIPDIYT--FNTMLDACAAEKRWDDLELVYKRMLH-HGLHFN-------AKRHLRMILDASRAGKVELLEITWEHLARAD 342 (455)
Q Consensus 273 ~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 342 (455)
..|.... +-.-+..+...+.++.|+-+.+.+.. .+..|+ ..++..+.+++...|.+..|...|++.+...
T Consensus 14 ~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 14 LVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp -------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 5554443 34446678888999999888887665 222333 1356667788899999999999999863322
Q ss_pred CC-----------------------CCh-HhHHHHHHHHhhccchHHHHHHhhhcCCCC
Q 048235 343 RI-----------------------TPP-ALIKERFCNRLENKDYGSAISCLVSHPVSG 377 (455)
Q Consensus 343 ~~-----------------------~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 377 (455)
.. ..+ .+...+..|.++.+++++|+.+++..|...
T Consensus 94 k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 94 KALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp HCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred HHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 11 111 233455666679999999999999988544
No 246
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.01 E-value=7.2e-05 Score=68.03 Aligned_cols=205 Identities=15% Similarity=0.124 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC
Q 048235 196 VVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP 275 (455)
Q Consensus 196 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p 275 (455)
+.+|..|..+..+.+++.+|++.|=+. .|+..|..+|.+..+.|.+++-+..+...++.. .
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~------------k-- 114 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA------------R-- 114 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC------------C--
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh------------c--
Confidence 456778888888888887776665332 456667888888889999999888888777643 2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHH
Q 048235 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFC 355 (455)
Q Consensus 276 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 355 (455)
++..=+.|+-+|++.++..+..+++ -.|+..-...+-+-|...|.++.|.-+|..+.. +..+..
T Consensus 115 e~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAs 178 (624)
T 3lvg_A 115 ESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLAS 178 (624)
T ss_dssp STTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSS
T ss_pred ccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHH
Confidence 3344457888999998877655544 236655566777888889998888877766532 234555
Q ss_pred HHhhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcc-hHHHHHHHhccccccccCCCchhHHHHHHhHHhh
Q 048235 356 NRLENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQD-TLIQLLHEASSSLTTRNGSPYPVLQNLISSCKDF 434 (455)
Q Consensus 356 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 434 (455)
++++.|++..|.+..+++. +. .+|..... +|-...+ ..+..+-=-+. . +++-.-.|.+.|...|.+
T Consensus 179 tLV~L~~yq~AVdaArKAn---s~----ktWKeV~~--ACvd~~EfrLAqicGLniI-v---hadeL~elv~~YE~~G~f 245 (624)
T 3lvg_A 179 TLVHLGEYQAAVDGARKAN---ST----RTWKEVCF--ACVDGKEFRLAQMCGLHIV-V---HADELEELINYYQDRGYF 245 (624)
T ss_dssp SSSSCSGGGSSTTTTTTCC---SS----CSHHHHTH--HHHHSCTTTTTTHHHHHHH-C---CSSCCSGGGSSSSTTCCC
T ss_pred HHHHHHHHHHHHHHHHhcC---Ch----hHHHHHHH--HHhCchHHHHHHHhcchhc-c---cHHHHHHHHHHHHhCCCH
Confidence 5668888888887666553 11 67777666 3544444 22222221111 2 344555677778888888
Q ss_pred hhccCCcc-cccCCC
Q 048235 435 LRTQSPAP-VVNLTG 448 (455)
Q Consensus 435 ~~a~~~~~-~~~~~~ 448 (455)
++-..+++ +.|++.
T Consensus 246 ~ELIsLlEaglglEr 260 (624)
T 3lvg_A 246 EELITMLEAALGLER 260 (624)
T ss_dssp TTSTTTHHHHTTSTT
T ss_pred HHHHHHHHHHhCCCc
Confidence 87777765 556554
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.62 E-value=8.3 Score=35.63 Aligned_cols=261 Identities=14% Similarity=0.184 Sum_probs=154.8
Q ss_pred cCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHhhHHHH
Q 048235 20 AGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQ-QGQKPSATTYGLV 98 (455)
Q Consensus 20 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~l 98 (455)
.|+++.|++.+-.+.+.... .....-.......++..|...++|+...+.+..+.. +|..+.. ...+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~----------~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~ 96 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQ----------ASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYM 96 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSS----------SCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHH
T ss_pred cCCHHHHHHHHHHHHHHhhh----------ccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHH
Confidence 36788888877665531000 022244566788899999999999998887776654 3433222 2233
Q ss_pred HHH----HHHcCChhHH--HHHHHHHHh--cCC--C---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---
Q 048235 99 MEV----MLACGKYNLV--YEFFRKVQK--SYI--P---NALAYKVLVNTLWREGKTDEAVSAVEDMERR--GIVGS--- 160 (455)
Q Consensus 99 ~~~----~~~~~~~~~a--~~~~~~~~~--~~~--~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~--- 160 (455)
++. .......+.. ..+.+.+.. .+. . .......|...|...|++.+|..++.++... +....
T Consensus 97 V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~k 176 (445)
T 4b4t_P 97 IQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEK 176 (445)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHH
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHH
Confidence 332 2233333321 222222111 111 1 2234467888999999999999999998754 22211
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCHHH
Q 048235 161 AALYYDLARCLCSAGKCEEALMQMDKICK----VANKPL--VVSYTGLIQACLDSGNIQNAAYIFNQMKNF--CSPNLVT 232 (455)
Q Consensus 161 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 232 (455)
...+...++.|...+++..|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.++-.. ...+...
T Consensus 177 ve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~ 256 (445)
T 4b4t_P 177 IQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAK 256 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHH
Confidence 34566788889999999999999988642 222333 345677788888999999999888887543 2233332
Q ss_pred HHH----HHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 048235 233 CNI----MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAE--KRWDDLELVYKRML 304 (455)
Q Consensus 233 ~~~----li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--~~~~~a~~~~~~m~ 304 (455)
+.. ++.+..-.+....-..+........ .-++...|..++.+|... .+++.+.+.|....
T Consensus 257 ~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~------------~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 257 WKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDN------------NLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHS------------SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHhhcc------------cccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 222 2222222222222233444443332 346788899999998765 35666666665443
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.61 E-value=1.5 Score=32.22 Aligned_cols=63 Identities=8% Similarity=0.028 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048235 72 QWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVN 134 (455)
Q Consensus 72 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 134 (455)
|.=+..+-++.+...++.|+.......+++|.+.+++..|.++|+.++....+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 344566677777777888888888888888888888888888888888766555566766655
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.05 E-value=16 Score=38.41 Aligned_cols=129 Identities=15% Similarity=0.230 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 048235 128 AYKVLVNTLWREGKTDEAVSAVEDMERRGIVGS----AALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLI 203 (455)
Q Consensus 128 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 203 (455)
-|..++..+-+.+.++.+.++-....+....-+ ...|..+.+++...|++++|...+-.+.....+ ......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHH
Confidence 466677777778888887777766655322222 124666777788888888888777766655433 34555566
Q ss_pred HHHHhcCCH------------HHHHHHHHHHH-hc--CCCCHHHHHHHHHHHHhcCChhHHHH-HHHHHHh
Q 048235 204 QACLDSGNI------------QNAAYIFNQMK-NF--CSPNLVTCNIMVKAYLEHGLFEEAMK-LFQEMAE 258 (455)
Q Consensus 204 ~~~~~~~~~------------~~a~~~~~~~~-~~--~~~~~~~~~~li~~~~~~~~~~~a~~-~~~~m~~ 258 (455)
...|..+.. ++..+++...- .. ....+.-|..|=.-+..+|++..|-. +|+.+.+
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 666655443 33444443321 11 11222345555555566777776544 4555544
No 250
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.74 E-value=2.9 Score=30.80 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048235 176 KCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVK 238 (455)
Q Consensus 176 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 238 (455)
|.-+..+-++.+.....-|++.+..+.+++|.+.+++..|.++|+-++..+.+....|..++.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 455566667777777778888888888888888888888888888887765555555665554
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.68 E-value=1.7 Score=39.50 Aligned_cols=61 Identities=10% Similarity=0.068 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048235 198 SYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258 (455)
Q Consensus 198 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 258 (455)
+...++..+...|+++++...+..+....+.+...|..+|.++...|+..+|++.|+....
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455778888999999999999999887888999999999999999999999999988755
No 252
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.51 E-value=14 Score=33.39 Aligned_cols=98 Identities=7% Similarity=-0.021 Sum_probs=48.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCH
Q 048235 235 IMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH--HGLHFNA 312 (455)
Q Consensus 235 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~ 312 (455)
-++..|...|++.+|.+++.++.+.-... +...--...+..-+..|...+++.++...+..... ..+.+++
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-------dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKL-------DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTS-------SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcc-------ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 45666666777777766666666542000 00000123444455566666777777766666654 2222333
Q ss_pred HHHHH--HHHH--HH-hcCChHHHHHHHHHHh
Q 048235 313 KRHLR--MILD--AS-RAGKVELLEITWEHLA 339 (455)
Q Consensus 313 ~~~~~--ll~~--~~-~~g~~~~a~~~~~~~~ 339 (455)
..... ...+ +. ..++++.|...|-+..
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22211 1111 24 5666776666555443
No 253
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.11 E-value=11 Score=34.55 Aligned_cols=101 Identities=7% Similarity=-0.052 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---c
Q 048235 232 TCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP--DIYTFNTMLDACAAEKRWDDLELVYKRMLH---H 306 (455)
Q Consensus 232 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~ 306 (455)
++..+...|.+.|+++.|.+.|.++.... ..+ -...+..+++.+...+++..+...++++.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~------------~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~ 200 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKA------------ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK 200 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHH------------TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc------------CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc
Confidence 56678889999999999999999998765 223 357788889999999999999999999875 3
Q ss_pred CCCCCHHHHHHHH--HHHHhcCChHHHHHHHHHHhhcCCC
Q 048235 307 GLHFNAKRHLRMI--LDASRAGKVELLEITWEHLARADRI 344 (455)
Q Consensus 307 ~~~p~~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~~~~ 344 (455)
+-.|+.......- ..+...+++..|.+.|-+.......
T Consensus 201 ~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 201 GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 3334332211111 2236778999999888877655433
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.10 E-value=3.7 Score=31.68 Aligned_cols=100 Identities=13% Similarity=0.067 Sum_probs=69.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--c
Q 048235 236 MVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPD-------IYTFNTMLDACAAEKRWDDLELVYKRMLH--H 306 (455)
Q Consensus 236 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~ 306 (455)
-+..+...|.++.|.-+...+..... ..|+ ..++..+.+++...+++..|...|++.++ .
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~-----------~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k 94 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSN-----------NNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK 94 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH-----------HSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhc-----------CCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 35667788999998887777554320 1233 23566778899999999999999999754 1
Q ss_pred CC----------------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 048235 307 GL----------------------HFNAKRHLRMILDASRAGKVELLEITWEHLARADRITP 346 (455)
Q Consensus 307 ~~----------------------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 346 (455)
.+ ..+...-..+..+|.+.|++++|+.+++.+....+.+.
T Consensus 95 ~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~k 156 (167)
T 3ffl_A 95 ALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPK 156 (167)
T ss_dssp CC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHH
T ss_pred HHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHH
Confidence 11 01112334466777999999999999999877666544
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.40 E-value=21 Score=32.24 Aligned_cols=162 Identities=9% Similarity=-0.024 Sum_probs=91.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCHHHHHHH-
Q 048235 166 DLARCLCSAGKCEEALMQMDKICKVANKPL-----VVSYTGLIQACLDSGNIQNAAYIFNQMKNF---CSPNLVTCNIM- 236 (455)
Q Consensus 166 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l- 236 (455)
-++..|...|++.+|..++..+.+.--..| ..++..-++.|...+++.++...+...... +.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 477888888999998888887766421212 455677778888899999999888877542 33444433222
Q ss_pred ---HHHHH-hcCChhHHHHHHHHHHhcccccchhhccCCCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHcCC
Q 048235 237 ---VKAYL-EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIP---DIYTFNTMLDACAAEKRWDDLELVYK-RMLHHGL 308 (455)
Q Consensus 237 ---i~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~-~m~~~~~ 308 (455)
...+. ..+++..|...|-+..+.-. ....| +...|..|. +... ++..+...++. .....-.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~---------~~~~~~~~~~lkYlvL~-aLl~-~~r~el~~~l~~~~~~~~~ 252 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFD---------SVDSVKALTSLKYMLLC-KIML-GQSDDVNQLVSGKLAITYS 252 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHT---------TTCHHHHHHHHHHHHHH-HHHT-TCGGGHHHHHHSHHHHTTC
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhccc---------ccccHHHHHHHHHHHHH-HHHc-CCHHHHHHHhccccccccC
Confidence 23345 78899999888777643210 00112 122332222 2222 22223323222 2111113
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 048235 309 HFNAKRHLRMILDASRAGKVELLEITWEHLA 339 (455)
Q Consensus 309 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 339 (455)
.|+...+..++.++ ..+++.....+++...
T Consensus 253 ~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~ 282 (394)
T 3txn_A 253 GRDIDAMKSVAEAS-HKRSLADFQAALKEYK 282 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHHHHHHST
T ss_pred CccHHHHHHHHHHH-HhCCHHHHHHHHHHHH
Confidence 45555555555554 5778888777777654
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.77 E-value=11 Score=27.78 Aligned_cols=75 Identities=5% Similarity=-0.078 Sum_probs=54.4
Q ss_pred CCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCh
Q 048235 273 VIPDIYTFNTMLDACAAEKR---WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPP 347 (455)
Q Consensus 273 ~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 347 (455)
-.|+..+--.+..++.+..+ ..+++.+++.+.+.+..-.......+..++.+.|++++|.++.+.+++..|....
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 34666666666667777664 4578888888887552112445666777899999999999999999988766554
No 257
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.18 E-value=35 Score=33.02 Aligned_cols=330 Identities=12% Similarity=0.079 Sum_probs=153.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 048235 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWR 138 (455)
Q Consensus 59 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 138 (455)
.|.....+ .+.|++..+..+...+...-+. .-..|..+.... .....+++..++.+-... +.....-+..+..+.+
T Consensus 9 ~~~~a~~a-~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~-p~~~~Lr~~~l~~l~~ 84 (618)
T 1qsa_A 9 RYAQIKQA-WDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANPTL-PPARTLQSRFVNELAR 84 (618)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCCCC-hhHHHHHHHHHHHHHh
Confidence 34444443 3567777777666655332221 112333332211 111334444443332211 1122334556677777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 048235 139 EGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYI 218 (455)
Q Consensus 139 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 218 (455)
.+++...+.++.. .+.+...-.....+....|+..+|......+-..|.. ....+..++..+.+.|.+.... +
T Consensus 85 ~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~~~-~ 157 (618)
T 1qsa_A 85 REDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPLA-Y 157 (618)
T ss_dssp TTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHHH-H
T ss_pred CCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCHHH-H
Confidence 8887776664432 2334544455677777889888888877777766633 4556777777777666543321 2
Q ss_pred HHHHHhc-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHH---HHHHHHHHHHHcCCHH
Q 048235 219 FNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIY---TFNTMLDACAAEKRWD 294 (455)
Q Consensus 219 ~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~---~~~~li~~~~~~~~~~ 294 (455)
+.+|... ...+...-..++... . .......+.+..+.... ..-........|+.. .+...+.-+.+ .+.+
T Consensus 158 ~~R~~~al~~~~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~p---~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~d~~ 231 (618)
T 1qsa_A 158 LERIRLAMKAGNTGLVTVLAGQM-P-ADYQTIASAIISLANNP---NTVLTFARTTGATDFTRQMAAVAFASVAR-QDAE 231 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTC-C-GGGHHHHHHHHHHHHCG---GGHHHHHHHSCCCHHHHHHHHHHHHHHHH-HCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhC-C-HHHHHHHHHHHHHHhCh---HhHHHHHhccCCChhhHHHHHHHHHHHHh-cCHH
Confidence 2222111 011222111111111 0 00000001111111100 000000000122222 22223333333 3789
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH----HHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHh
Q 048235 295 DLELVYKRMLHHGLHFNAKRHLRMI----LDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCL 370 (455)
Q Consensus 295 ~a~~~~~~m~~~~~~p~~~~~~~ll----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 370 (455)
.|...|....+.. ..+......+- ......+...++...+....... ..+..........++.|++..|...+
T Consensus 232 ~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~ 308 (618)
T 1qsa_A 232 NARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWL 308 (618)
T ss_dssp HHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999998887632 12332222222 22333443556666666654322 23333334444456889999999999
Q ss_pred hhcCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHhc
Q 048235 371 VSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEAS 410 (455)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 410 (455)
+.++...........|..-.. ...|+.+++...+.+.+
T Consensus 309 ~~l~~~~~~~~r~~YW~~ra~--~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 309 ARLPMEAKEKDEWRYWQADLL--LERGREAEAKEILHQLM 346 (618)
T ss_dssp HHSCTTGGGSHHHHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred HHccccccccHhHHHHHHHHH--HHcCCHHHHHHHHHHHh
Confidence 998865433223356665543 34455555555444443
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.02 E-value=9.6 Score=35.01 Aligned_cols=100 Identities=8% Similarity=-0.114 Sum_probs=69.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC--CCHHHHHH
Q 048235 56 DIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQK--PSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI--PNALAYKV 131 (455)
Q Consensus 56 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~ 131 (455)
-..++..+...|.+.|+++.|.+.|.++...-.. --...+-.+++.+...+++..+...+.++..... ++....+.
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 3457778888999999999999999998875333 2356677788888899999999888888754311 23222221
Q ss_pred H----HHHHHhcCChHHHHHHHHHHHHC
Q 048235 132 L----VNTLWREGKTDEAVSAVEDMERR 155 (455)
Q Consensus 132 l----i~~~~~~g~~~~a~~~~~~m~~~ 155 (455)
+ ...+...+++..|...|.+....
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1 12234568898888888776553
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.18 E-value=6.9 Score=32.95 Aligned_cols=129 Identities=10% Similarity=-0.019 Sum_probs=77.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccchH
Q 048235 285 DACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDYG 364 (455)
Q Consensus 285 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (455)
....+.|+++++++....-++... -|...-..++..++-.|+++.|.+-++...+.++..-. ....+..+++.....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~--~a~~yr~lI~aE~~R 81 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP--GASQLRHLVKAAQAR 81 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH--HHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHHHH
Confidence 345678999999999988888542 35666677888889999999999999988877644332 334556666555555
Q ss_pred HHHHHhhhcCCCCCccccHHHHHH-HHhhhcccCCcc-hHHHHHHHhccccccccCC
Q 048235 365 SAISCLVSHPVSGSPEFSRNAWLK-FFKENSQHFGQD-TLIQLLHEASSSLTTRNGS 419 (455)
Q Consensus 365 ~A~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~ 419 (455)
++.--=+..|.-... ...|.. ++.+......++ +.+......+.+.-|..+.
T Consensus 82 ~~vfaG~~~P~~~g~---~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 82 KDFAQGAATAKVLGE---NEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHTTSCCCEECCCS---CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHcCCCCCCCCCC---CHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 544322333422211 144555 333333333333 4444444555546666554
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.09 E-value=7.3 Score=26.91 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=25.4
Q ss_pred hhccchHHHHHHhhhcCCCCCccccHHHHHHHHhhhcccCCcchHHHHHHHhcccccc
Q 048235 358 LENKDYGSAISCLVSHPVSGSPEFSRNAWLKFFKENSQHFGQDTLIQLLHEASSSLTT 415 (455)
Q Consensus 358 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p 415 (455)
..+|+|++|..+.+..+ .| +-..|.++.. ...|-.+.+.....+...+.+|
T Consensus 50 mNrG~Yq~Al~l~~~~c-~p----dlepw~ALce--~rlGl~s~le~rL~~la~sg~p 100 (115)
T 2uwj_G 50 ANQGRYQEALAFAHGNP-WP----ALEPWFALCE--WHLGLGAALDRRLAGLGGSSDP 100 (115)
T ss_dssp HHTTCHHHHHGGGTTCC-CG----GGHHHHHHHH--HHTTCHHHHHHHHHHHHTCSSH
T ss_pred HcchhHHHHHHhcCCCC-Cc----hHHHHHHHHH--HhcccHHHHHHHHHHHHhCCCH
Confidence 36666666666666555 22 2256666665 3444444333333344443433
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.00 E-value=7.6 Score=26.88 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=7.4
Q ss_pred hccchHHHHHHhhhcC
Q 048235 359 ENKDYGSAISCLVSHP 374 (455)
Q Consensus 359 ~~~~~~~A~~~~~~~~ 374 (455)
.+|+|++|..+.+..+
T Consensus 52 NrG~Yq~Al~l~~~~c 67 (116)
T 2p58_C 52 NRGDYASALQQGNKLA 67 (116)
T ss_dssp HTTCHHHHHHHHTTSC
T ss_pred cchhHHHHHHhcCCCC
Confidence 4444444444444443
No 262
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=81.58 E-value=21 Score=31.70 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhcc
Q 048235 198 SYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGL--FEEAMKLFQEMAEDS 260 (455)
Q Consensus 198 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~ 260 (455)
....++.-|...++.++|.+.++++....-....+...+..++-+.++ .+...+++..+...|
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~g 283 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 283 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 357788889999999999999998864111123334444444444332 345677777777766
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.59 E-value=7.9 Score=32.60 Aligned_cols=53 Identities=17% Similarity=0.158 Sum_probs=26.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 048235 68 VRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKS 121 (455)
Q Consensus 68 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 121 (455)
.+.|+++++++....-.+..+. |...-..++..+|-.|+++.|.+-++...+.
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3455555555555555444322 4444455555555555555555554444433
No 264
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=75.52 E-value=23 Score=26.49 Aligned_cols=74 Identities=5% Similarity=-0.071 Sum_probs=53.3
Q ss_pred CCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCh
Q 048235 274 IPDIYTFNTMLDACAAEKR---WDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPP 347 (455)
Q Consensus 274 ~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 347 (455)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+..-.......+..++.+.|++++|.++.+.+++..|....
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 4666666667777777664 4578888888887442222345556667789999999999999999988876554
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.34 E-value=18 Score=25.08 Aligned_cols=80 Identities=16% Similarity=0.051 Sum_probs=53.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 048235 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253 (455)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 253 (455)
....++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.+. .||...|.+|- -.+.|..+++...+
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALc--e~rlGl~s~le~rL 91 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP---WPALEPWFALC--EWHLGLGAALDRRL 91 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC---CGGGHHHHHHH--HHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC---CchHHHHHHHH--HHhcccHHHHHHHH
Confidence 3456777777777666653 22222233445677888888887776554 58888887664 35778888888888
Q ss_pred HHHHhcc
Q 048235 254 QEMAEDS 260 (455)
Q Consensus 254 ~~m~~~~ 260 (455)
.++..+|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 7777776
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=74.41 E-value=19 Score=24.98 Aligned_cols=80 Identities=14% Similarity=0.064 Sum_probs=52.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 048235 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253 (455)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 253 (455)
....++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.+. .||...|.+|-. .+.|..+++...+
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA---YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC---CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC---CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 3456777777776666553 22222233445677888888888776654 588888776643 5677777877777
Q ss_pred HHHHhcc
Q 048235 254 QEMAEDS 260 (455)
Q Consensus 254 ~~m~~~~ 260 (455)
.++..+|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 7777665
No 267
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=73.00 E-value=16 Score=31.60 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhcc
Q 048235 199 YTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGL--FEEAMKLFQEMAEDS 260 (455)
Q Consensus 199 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~ 260 (455)
...++.-|...|+.++|.+.++++..-.-....+...+..++-+.++ .+.+.+++..+.+.|
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~ 232 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSS 232 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCC
Confidence 56788888889999999999999853100112233334444443322 345667777777766
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=70.72 E-value=39 Score=27.00 Aligned_cols=58 Identities=7% Similarity=-0.007 Sum_probs=43.7
Q ss_pred cCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 048235 243 HGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311 (455)
Q Consensus 243 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 311 (455)
.+...++.++|..|...|+ -.--...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~I-----------G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGI-----------GTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTS-----------STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCC-----------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3446688888888888874 233567777777888888888888888888888777774
No 269
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=70.46 E-value=30 Score=25.53 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048235 158 VGSAALYYDLARCLCSAGKC---EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPN 229 (455)
Q Consensus 158 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 229 (455)
.|+..+--.+..++.++.+. .+++.+++++.+.+..-.....--|.-++.+.|+++.|.+..+.+.+..|.|
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 44444444455555555443 3455566655554421123333345556666666666666666665533333
No 270
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=68.82 E-value=46 Score=27.44 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=18.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 048235 63 VLNACVRRKQWEGAFWVLQQLKQ 85 (455)
Q Consensus 63 li~~~~~~~~~~~a~~~~~~m~~ 85 (455)
-++.+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 45677888888888888887765
No 271
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=66.59 E-value=67 Score=28.13 Aligned_cols=83 Identities=13% Similarity=0.075 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048235 227 SPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHH 306 (455)
Q Consensus 227 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 306 (455)
.-++.....+...|.+.+++.+|...|- . | ..++...|..++.-+...+...+
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g------------~~~s~~~~a~mL~ew~~~~~~~e----------- 185 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--L--G------------TKESPEVLARMEYEWYKQDESHT----------- 185 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--S------------CTTHHHHHHHHHHHHHHTSCGGG-----------
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--h--c------------CCchHHHHHHHHHHHHHhcCCcc-----------
Confidence 3466777788888888888888887662 2 3 33444666555544443332111
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048235 307 GLHFNAKRHLRMILDASRAGKVELLEITWEHLAR 340 (455)
Q Consensus 307 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 340 (455)
++.. ....+--|.-.+++..|..+++...+
T Consensus 186 ---~dlf-iaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 ---APLY-CARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ---HHHH-HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHH-HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1221 22233345667888888887766553
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=65.15 E-value=14 Score=31.04 Aligned_cols=184 Identities=9% Similarity=0.017 Sum_probs=86.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh---hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 048235 62 AVLNACVRRKQWEGAFWVLQQLKQQGQKPSAT---TYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWR 138 (455)
Q Consensus 62 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 138 (455)
+.+...++.|+.+.+ +.+.+.|..++.. .-.+.+...+..|+.+-+..+++.-..-...+..-.+. +...+.
T Consensus 7 ~~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLV----QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATP-FLLAAI 81 (285)
T ss_dssp HHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH-HHHHHH
T ss_pred hHHHHHHHcCCHHHH----HHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH-HHHHHH
Confidence 445556678887544 4445556555432 11234455567788776655554311111122222223 333445
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHH------------HHHHHH
Q 048235 139 EGKTDEAVSAVEDMERRGIVGSA---ALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV------------SYTGLI 203 (455)
Q Consensus 139 ~g~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------~~~~li 203 (455)
.|+.+- ++.+.+.|..++. .-.+ .+...+..|+.+-+ +.+.+.|..++.. .-.+.+
T Consensus 82 ~~~~~~----v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L 152 (285)
T 1wdy_A 82 AGSVKL----LKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKAL----KFLYKRGANVNLRRKTKEDQERLRKGGATAL 152 (285)
T ss_dssp HTCHHH----HHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHH----HHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred cCCHHH----HHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHHH----HHHHHhCCCcccccccHHHHHhhccCCCcHH
Confidence 566544 4444455544331 1112 23334556766544 3444444433311 001234
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 204 QACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
...+..|+.+-+..+++..... ...+....+.+.. .+..+......++++.+.+.|
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g 209 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHG 209 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcC
Confidence 4455677777666666542111 1222222333333 344566555567777777777
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.98 E-value=62 Score=25.84 Aligned_cols=58 Identities=12% Similarity=-0.003 Sum_probs=46.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCh
Q 048235 290 EKRWDDLELVYKRMLHHGLHFN-AKRHLRMILDASRAGKVELLEITWEHLARADRITPP 347 (455)
Q Consensus 290 ~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 347 (455)
.+...++..+|..|...|+--. ...|......+...|++++|.++|+.-++..-.|-+
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4447799999999999877544 456777777789999999999999999888766544
No 274
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=60.53 E-value=42 Score=25.10 Aligned_cols=61 Identities=7% Similarity=-0.039 Sum_probs=44.6
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccc
Q 048235 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKD 362 (455)
Q Consensus 301 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (455)
+.+.+.|++++. .-..++..+...+..-.|.++++.+.+.++....+++...+..+.+.|-
T Consensus 11 ~~l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 11 ETLKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 446678888876 3445666666677778899999999888877677777777777665554
No 275
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=60.24 E-value=1.3e+02 Score=29.15 Aligned_cols=79 Identities=13% Similarity=0.140 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 048235 59 VYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWR 138 (455)
Q Consensus 59 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 138 (455)
.-+.-+..+.+.+++...+..+.. .+.+...-+....+....|+...|......+-..+......+..++..+.+
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~ 148 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRA 148 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 334445555666666655554332 122444445555566666666555555555544444455555566665555
Q ss_pred cCCh
Q 048235 139 EGKT 142 (455)
Q Consensus 139 ~g~~ 142 (455)
.|.+
T Consensus 149 ~g~l 152 (618)
T 1qsa_A 149 SGKQ 152 (618)
T ss_dssp TTCS
T ss_pred CCCC
Confidence 4443
No 276
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=59.31 E-value=30 Score=27.85 Aligned_cols=66 Identities=9% Similarity=0.007 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhc
Q 048235 293 WDDLELVYKRMLHHGLHFNAK-------RHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLEN 360 (455)
Q Consensus 293 ~~~a~~~~~~m~~~~~~p~~~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (455)
++.|+.+|+.+.+.-.-++.. .-...+..|.+.|.+++|.+++++.......+. . +...+..+++.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~-k-Lr~kL~~II~~ 160 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQ-K-LRNDLLNIIRE 160 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGH-H-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCch-H-HHHHHHHHHhc
Confidence 456666777666632111111 112345568999999999999999987643322 1 34444444433
No 277
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=58.43 E-value=53 Score=29.11 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHHh
Q 048235 163 LYYDLARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGN--IQNAAYIFNQMKN 224 (455)
Q Consensus 163 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~ 224 (455)
....++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+...+++..+..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~ 281 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWK 281 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence 3567888899999999999999988643322 23445555555544333 3446666666654
No 278
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=57.48 E-value=57 Score=24.36 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048235 158 VGSAALYYDLARCLCSAGKC---EEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPN 229 (455)
Q Consensus 158 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 229 (455)
.|+..+--.+..++.++.+. .+++.+++.+.+.+..-.....--|.-++.+.|+++.|.+..+.+.+..|.|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 45555555566666665543 3466666666665432223333345566777777777777777776644434
No 279
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=56.63 E-value=1.2e+02 Score=27.87 Aligned_cols=141 Identities=13% Similarity=0.017 Sum_probs=81.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 048235 174 AGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLF 253 (455)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 253 (455)
..+.+-|.++- .+.|.+--...|..-.+.+...|++++|-++--....+.-.+..|.+.+-..=..-|+..--+.+|
T Consensus 342 l~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 342 LQNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp TCCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred cCCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 45566555443 344444445556666777778888888888877777766667777666555444556667777777
Q ss_pred HHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 048235 254 QEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEI 333 (455)
Q Consensus 254 ~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 333 (455)
..+.+.| +.+..-=.-+++.-...|+.+-..+++. +..+..+.. . .-+.+..+..-|..
T Consensus 419 ~~Ll~~g-------------~Ln~~ESlEl~r~vL~q~r~~llekWl~---e~KL~~SEe-L----GDlvk~~d~~LAl~ 477 (494)
T 1bpo_A 419 GILLDQG-------------QLNKYESLELCRPVLQQGRKQLLEKWLK---EDKLECSEE-L----GDLVKSVDPTLALS 477 (494)
T ss_dssp HHHHHHS-------------CCCHHHHHHHHHHHHHTTCHHHHHHHHH---HTCSCCCHH-H----HHHHHHHCSHHHHH
T ss_pred HHHhccC-------------ccchHHhhHHhHHHHhccHHHHHHHHHh---cCCccccHH-h----HhhhhhcCHHHHHH
Confidence 7777776 3444333334555555666554444433 233444332 2 22224445566666
Q ss_pred HHHHH
Q 048235 334 TWEHL 338 (455)
Q Consensus 334 ~~~~~ 338 (455)
+|.+.
T Consensus 478 IY~~a 482 (494)
T 1bpo_A 478 VYLRA 482 (494)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 66554
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=55.78 E-value=38 Score=25.67 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=22.2
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048235 145 AVSAVEDMERRGIVGS-AALYYDLARCLCSAGKCEEALMQMDKICKVANKP 194 (455)
Q Consensus 145 a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 194 (455)
+.++|..|...|+-.. ...|......+...|++.+|..+|+.-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4444444444443222 2333444444444455555555554444444443
No 281
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=55.04 E-value=44 Score=25.17 Aligned_cols=62 Identities=11% Similarity=0.012 Sum_probs=43.4
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccch
Q 048235 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKDY 363 (455)
Q Consensus 301 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (455)
+.+.+.|++++. .-..++..+...+..-.|.++++.+.+.++....++++..+..+.+.|-.
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 446668888765 44456667777777888999999998888777777777777777655543
No 282
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=54.90 E-value=19 Score=28.33 Aligned_cols=82 Identities=11% Similarity=0.093 Sum_probs=40.3
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh
Q 048235 15 VTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPSATT 94 (455)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 94 (455)
...+..|+.+....++..-... ....|..-++.|. ..++.|+.+ +++.+.+.|..++...
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~---------------~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~ 69 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTTYQ---------------VDEVDTEGNTPLN-IAVHNNDIE----IAKALIDRGADINLQN 69 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTTCC---------------TTCCCTTSCCHHH-HHHHHTCHH----HHHHHHHTTCCTTCCC
T ss_pred HHHHHhccHHHHHHHHHcCCCC---------------CCCCCCCCCCHHH-HHHHcCCHH----HHHHHHHcCCCCCCCC
Confidence 3445677877777776543210 0112222233333 334556644 4555556666654322
Q ss_pred ---HHHHHHHHHHcCChhHHHHHHHH
Q 048235 95 ---YGLVMEVMLACGKYNLVYEFFRK 117 (455)
Q Consensus 95 ---~~~l~~~~~~~~~~~~a~~~~~~ 117 (455)
.+. +...+..|+.+-+..+++.
T Consensus 70 ~~g~t~-l~~A~~~~~~~~~~~Ll~~ 94 (201)
T 3hra_A 70 SISDSP-YLYAGAQGRTEILAYMLKH 94 (201)
T ss_dssp TTSCCH-HHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCH-HHHHHHcCCHHHHHHHHhc
Confidence 222 3344566777666665543
No 283
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=54.85 E-value=1.1e+02 Score=26.58 Aligned_cols=139 Identities=13% Similarity=-0.012 Sum_probs=74.4
Q ss_pred HHHhcCCHHHHHH----HHHHHHHcCCCCCHhhHHHHHHHHHHcCChh-HHHHHHHHHH----hcCC---CCHHHHHHHH
Q 048235 66 ACVRRKQWEGAFW----VLQQLKQQGQKPSATTYGLVMEVMLACGKYN-LVYEFFRKVQ----KSYI---PNALAYKVLV 133 (455)
Q Consensus 66 ~~~~~~~~~~a~~----~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~~---~~~~~~~~li 133 (455)
.+.+.|+...|-+ +.+-..+.+++++......++..+.....-+ .-.++.+.+. +.+. -++.....+.
T Consensus 62 ~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a 141 (312)
T 2wpv_A 62 SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIG 141 (312)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence 3455677655544 3555556688888888888877766544222 1223333332 2211 4667777788
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 048235 134 NTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSA---GKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSG 210 (455)
Q Consensus 134 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 210 (455)
..|.+.|++.+|...|- .|-.-+...+..++.-+... |...++ +... ...+-.|...+
T Consensus 142 ~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~-~RaVL~yL~l~ 202 (312)
T 2wpv_A 142 SKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFF-SRLVFNYLFIS 202 (312)
T ss_dssp HHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHH-HHHHHHHHHTT
T ss_pred HHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHH-HHHHHHHHHhc
Confidence 88888888888777663 12111233343333322222 322221 1121 22233455677
Q ss_pred CHHHHHHHHHHHH
Q 048235 211 NIQNAAYIFNQMK 223 (455)
Q Consensus 211 ~~~~a~~~~~~~~ 223 (455)
+...|..+|+...
T Consensus 203 n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 203 NISFAHESKDIFL 215 (312)
T ss_dssp BHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 8888888877653
No 284
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=54.59 E-value=55 Score=24.77 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCC--HHHHHHHHHHHHHc
Q 048235 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQ--WEGAFWVLQQLKQQ 86 (455)
Q Consensus 9 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~ 86 (455)
..+.++.-|...|+.++|.+.++++.. ..-....+...+..++-+.++ .+.+..++..+...
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~----------------p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~ 74 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEV----------------PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKS 74 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----------------GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----------------CcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC
Confidence 356778888888889999888888862 001122333444444444322 45566777777766
Q ss_pred CCCCC
Q 048235 87 GQKPS 91 (455)
Q Consensus 87 ~~~p~ 91 (455)
|+-+.
T Consensus 75 ~~is~ 79 (152)
T 2ion_A 75 STITI 79 (152)
T ss_dssp TCSCH
T ss_pred CCcCH
Confidence 65533
No 285
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=52.34 E-value=1.2e+02 Score=26.52 Aligned_cols=109 Identities=16% Similarity=0.105 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHH
Q 048235 96 GLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSA----VEDMERRGIVGSAALYYDLARCL 171 (455)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~~~~~~~~~l~~~~ 171 (455)
.++..=|.+.+++++|.+++..-.. .+.+.|+...|-++ ++.+.+.++++|......++..+
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~GA~--------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASVSQ--------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHH--------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3344446777888888877655432 23344444443333 34444556667766666666665
Q ss_pred HhcCC--HHHHHHHHHHH----HHcC--CCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048235 172 CSAGK--CEEALMQMDKI----CKVA--NKPLVVSYTGLIQACLDSGNIQNAAYIF 219 (455)
Q Consensus 172 ~~~g~--~~~a~~~~~~m----~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~ 219 (455)
..... ++. ..+++++ .+.| ..-|+..-..+...|.+.+++.+|..-|
T Consensus 105 ~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 105 RLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 54432 111 2223222 2222 2235566677888888888888877766
No 286
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=52.27 E-value=98 Score=25.45 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048235 195 LVVSYTGLIQACLDSGNIQNAAYIFNQM 222 (455)
Q Consensus 195 ~~~~~~~li~~~~~~~~~~~a~~~~~~~ 222 (455)
+.......+..+.+.|+.++|.++|-+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3444445556666666666666666544
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=51.77 E-value=47 Score=25.54 Aligned_cols=49 Identities=8% Similarity=0.003 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 048235 111 VYEFFRKVQKSYI--PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159 (455)
Q Consensus 111 a~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 159 (455)
..++|..|...+. .-...|......+-..|++.+|.++|+.-++.+..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3444444443332 333444444444444455555555555444444444
No 288
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=51.65 E-value=43 Score=24.65 Aligned_cols=60 Identities=12% Similarity=0.041 Sum_probs=41.6
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccc
Q 048235 302 RMLHHGLHFNAKRHLRMILDASRAG-KVELLEITWEHLARADRITPPALIKERFCNRLENKD 362 (455)
Q Consensus 302 ~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (455)
.+.+.|++++. .-..++..+...+ ..-.|.++++.+.+.++....+++...+..+.+.|-
T Consensus 8 ~l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 45668888776 3445566666665 677899999999888777676777777776655553
No 289
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=50.86 E-value=54 Score=25.09 Aligned_cols=68 Identities=15% Similarity=0.091 Sum_probs=47.7
Q ss_pred HHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCCCChHhHHHHHHHHhhccc
Q 048235 294 DDLELVYKR-MLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA--DRITPPALIKERFCNRLENKD 362 (455)
Q Consensus 294 ~~a~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 362 (455)
+.+.+-+.+ +.+.|++++. .-..++..+...+..-.|.++++.+.+. ++....+++.+.+..+.+.|-
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 444444444 4458898876 4456677777778888999999999887 666666667777776666654
No 290
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=49.98 E-value=81 Score=23.85 Aligned_cols=51 Identities=8% Similarity=-0.001 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 048235 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHF 310 (455)
Q Consensus 249 a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 310 (455)
+.++|..|...|+ -.--...|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~I-----------G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGI-----------GTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTT-----------TTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCC-----------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5666666666663 12245556666666666666666766666666665555
No 291
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.22 E-value=86 Score=23.67 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=10.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 048235 61 NAVLNACVRRKQWEGAFWVLQQL 83 (455)
Q Consensus 61 ~~li~~~~~~~~~~~a~~~~~~m 83 (455)
+.+|.-|...|+.++|...++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 33444444444444444444444
No 292
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=47.64 E-value=47 Score=24.83 Aligned_cols=60 Identities=3% Similarity=-0.082 Sum_probs=40.8
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccc
Q 048235 301 KRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFCNRLENKD 362 (455)
Q Consensus 301 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (455)
+.+.+.|++++.. -..++..+...+ .-.|.++++.+.+.++....+++++.+..+.+.|-
T Consensus 8 ~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 8 SDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3455688888763 344555555556 67899999999887776666667777766655553
No 293
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=47.18 E-value=1.1e+02 Score=24.42 Aligned_cols=60 Identities=10% Similarity=0.013 Sum_probs=40.7
Q ss_pred HHHHH---HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-----HHHHHHHHHHhhcCC
Q 048235 283 MLDAC---AAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-----ELLEITWEHLARADR 343 (455)
Q Consensus 283 li~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-----~~a~~~~~~~~~~~~ 343 (455)
+|+++ .+-.+.+.|+-++.+|++.| .|....-..++.+....|.- ..|...++.....+.
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 44444 45578999999999999999 77666666666667666653 335555555555553
No 294
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=46.66 E-value=46 Score=25.07 Aligned_cols=62 Identities=10% Similarity=0.017 Sum_probs=42.8
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCCCChHhHHHHHHHHhhccch
Q 048235 301 KRMLHHGLHFNAKRHLRMILDASRAG-KVELLEITWEHLARADRITPPALIKERFCNRLENKDY 363 (455)
Q Consensus 301 ~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (455)
+.+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.++....++++..+..+.+.|-.
T Consensus 6 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4466788887763 344555565555 6778999999998887776777777777776655543
No 295
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=45.90 E-value=1e+02 Score=27.02 Aligned_cols=11 Identities=18% Similarity=0.208 Sum_probs=7.2
Q ss_pred HHHHHHHhhhc
Q 048235 384 NAWLKFFKENS 394 (455)
Q Consensus 384 ~~~~~l~~~~~ 394 (455)
..|..++..+.
T Consensus 273 ~~~~pll~~~~ 283 (339)
T 1ug3_A 273 KARAKLLQKYL 283 (339)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHc
Confidence 45777777655
No 296
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.26 E-value=1.8e+02 Score=27.25 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=33.1
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHhc--CCCCH--HHH-HHHHHHHHhcCChHHHHHHHHHHHH
Q 048235 92 ATTYGLVMEVMLACGKYNLVYEFFRKVQKS--YIPNA--LAY-KVLVNTLWREGKTDEAVSAVEDMER 154 (455)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~~-~~li~~~~~~g~~~~a~~~~~~m~~ 154 (455)
...++.+++.|...+.++.|..+..+..-- ..++. ..| .-+...+.-.+++.+|.+.+.....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344556666666677777777666665311 00111 111 1234455556677777666666544
No 297
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=44.98 E-value=1.5e+02 Score=25.57 Aligned_cols=109 Identities=8% Similarity=0.000 Sum_probs=54.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHHH
Q 048235 97 LVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVS----AVEDMERRGIVGSAALYYDLARCLC 172 (455)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~~~~~~~~~~~~l~~~~~ 172 (455)
++..=|.+.+++++|.+++..-.. .+.+.|+...|-+ +++...+.+++++......++..+.
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~ga~--------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQGAL--------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH--------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344446667777777776554432 2344455444433 3444455566777666666665554
Q ss_pred hcCC-----HHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048235 173 SAGK-----CEEALMQMDKICKVAN--KPLVVSYTGLIQACLDSGNIQNAAYIF 219 (455)
Q Consensus 173 ~~g~-----~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~ 219 (455)
.... .+-..+....-.+.|. .-++.....+...|.+.+++.+|..-|
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4221 1111122222222221 124555666666677777766666544
No 298
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=44.63 E-value=71 Score=25.73 Aligned_cols=20 Identities=5% Similarity=0.180 Sum_probs=10.5
Q ss_pred HHHHhcCChhHHHHHHHHhh
Q 048235 15 VTLGQAGHIKELFDVIDSMR 34 (455)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~~~ 34 (455)
...++.|+.+-+..+++.+.
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~ 33 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQ 33 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 33445566665555555443
No 299
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=44.52 E-value=97 Score=23.21 Aligned_cols=7 Identities=14% Similarity=-0.130 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 048235 181 LMQMDKI 187 (455)
Q Consensus 181 ~~~~~~m 187 (455)
.++++.+
T Consensus 46 ~ei~~~l 52 (150)
T 2xig_A 46 EEITHSI 52 (150)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 300
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.10 E-value=1.1e+02 Score=23.45 Aligned_cols=52 Identities=2% Similarity=0.112 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 048235 249 AMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFN 311 (455)
Q Consensus 249 a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 311 (455)
+.++|..|...|+ -.--...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 79 p~~if~~L~~~~I-----------G~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGI-----------GVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTS-----------STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCc-----------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 5566667766663 122455566666666666777777777777666666664
No 301
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=42.98 E-value=65 Score=26.18 Aligned_cols=35 Identities=6% Similarity=0.050 Sum_probs=18.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 048235 276 DIYTFNTMLDACAAEKRWDDLELVYKRMLHHGLHF 310 (455)
Q Consensus 276 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 310 (455)
-...|......+...|++.+|.++|+.-++.+-.|
T Consensus 149 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 149 SSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34445555555555555555555555555554444
No 302
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=42.03 E-value=1e+02 Score=22.94 Aligned_cols=14 Identities=7% Similarity=-0.294 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHcC
Q 048235 178 EEALMQMDKICKVA 191 (455)
Q Consensus 178 ~~a~~~~~~m~~~~ 191 (455)
-.|.++++.+.+.+
T Consensus 38 ~sa~ei~~~l~~~~ 51 (145)
T 2fe3_A 38 PTADDIYKALEGKF 51 (145)
T ss_dssp CCHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHhC
Confidence 33344444443333
No 303
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.17 E-value=65 Score=26.18 Aligned_cols=53 Identities=23% Similarity=0.233 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 048235 143 DEAVSAVEDMERRGIVGS-AALYYDLARCLCSAGKCEEALMQMDKICKVANKPL 195 (455)
Q Consensus 143 ~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 195 (455)
+.+..+|..|...|+-.. ...|......+...|++.+|..+|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 567788888888876544 45677788888888999999999988888777764
No 304
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=39.74 E-value=1.9e+02 Score=25.23 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048235 59 VYNAVLNACVRRKQWEGAFWVLQQLK 84 (455)
Q Consensus 59 ~~~~li~~~~~~~~~~~a~~~~~~m~ 84 (455)
....++.-|...|+.++|...++++.
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 45667888888899999888887764
No 305
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=39.42 E-value=34 Score=28.96 Aligned_cols=179 Identities=7% Similarity=-0.038 Sum_probs=84.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHH
Q 048235 65 NACVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDE 144 (455)
Q Consensus 65 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 144 (455)
...+..|+.+-+. .+.+.|..++...-.+.+...+..|+.+-+..+++.-..-...+..-++.| ...+..|+.+-
T Consensus 36 ~~A~~~g~~~~v~----~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L-~~A~~~g~~~~ 110 (285)
T 3kea_A 36 YYAIADNNVRLVC----TLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTAL-YYAVDSGNMQT 110 (285)
T ss_dssp HHHHHTTCHHHHH----HHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHH
T ss_pred HHHHHcCCHHHHH----HHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHH-HHHHHcCCHHH
Confidence 3445577765544 444556554433223344455677887766666543111111233233333 33456677665
Q ss_pred HHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048235 145 AVSAVEDMERRGIVGSAA---LYYDLARCLCSAGKCEEALMQMDKICKVANKP-LVVSYTGLIQACLDSGNIQNAAYIFN 220 (455)
Q Consensus 145 a~~~~~~m~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 220 (455)
+..+++ .|..++.. -+.+.+...+..|+.+-+ +.+.+.|..+ +...-.+.+...+..|+.+-+..+++
T Consensus 111 v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 111 VKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHH
Confidence 544443 34333211 112233444566776544 3444445333 11122334455567788887777776
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 221 QMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 221 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
.-......+..-++..+...+..|+. ++.+.+++.|
T Consensus 183 ~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~g 218 (285)
T 3kea_A 183 YMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYD 218 (285)
T ss_dssp HHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSC
T ss_pred cCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcC
Confidence 54332222221122222333445553 4556666777
No 306
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=38.12 E-value=86 Score=25.92 Aligned_cols=122 Identities=11% Similarity=0.122 Sum_probs=58.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048235 12 SIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFWVLQQLKQQGQKPS 91 (455)
Q Consensus 12 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 91 (455)
+.+...++.|+++-...+++.-.. -....+..-+ +.+...+..|+.+ +++.+.+.|..|+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~---------------~~~~~~~~g~-t~L~~A~~~g~~~----~v~~Ll~~g~~~~ 66 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGAN---------------VNFQEEEGGW-TPLHNAVQMSRED----IVELLLRHGADPV 66 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC---------------TTCCCTTTCC-CHHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCC---------------cccccCCCCC-cHHHHHHHcCCHH----HHHHHHHcCCCCc
Confidence 456667788998777766654321 0111122222 2344455667764 4555666676654
Q ss_pred Hh---hHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 048235 92 AT---TYGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVG 159 (455)
Q Consensus 92 ~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 159 (455)
.. ..+ .+...+..|+.+-+..+++.-..-...+..-++. +...+..|+.+-. +.+.+.|..+
T Consensus 67 ~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~----~~Ll~~g~~~ 131 (285)
T 1wdy_A 67 LRKKNGAT-PFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTA-FMEAAVYGKVKAL----KFLYKRGANV 131 (285)
T ss_dssp CCCTTCCC-HHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBH-HHHHHHTTCHHHH----HHHHHTTCCT
T ss_pred ccCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCH-HHHHHHhCCHHHH----HHHHHhCCCc
Confidence 32 222 3344456777766555544311111122222233 3334556665543 4444554433
No 307
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.98 E-value=1.1e+02 Score=22.15 Aligned_cols=21 Identities=10% Similarity=0.252 Sum_probs=9.3
Q ss_pred HHHHHHHcCChhHHHHHHHHH
Q 048235 98 VMEVMLACGKYNLVYEFFRKV 118 (455)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~ 118 (455)
++.=|...|+.++|...++.+
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 333344444444444444444
No 308
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=37.55 E-value=1.1e+02 Score=21.81 Aligned_cols=76 Identities=14% Similarity=0.141 Sum_probs=47.7
Q ss_pred ChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 048235 245 LFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRMLH-HGLHFNAKRHLRMILDAS 323 (455)
Q Consensus 245 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~ 323 (455)
.+.+|+.-+++... ..+|......++..+... ++.++++.+...+ .|+.| .++...+....
T Consensus 3 ~~~~al~~L~e~~~--------------~~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~~~--~s~rd~~r~a~ 64 (119)
T 1wty_A 3 SLARAVERLKAALE--------------RPKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGLEA--RSPRAAIRGAF 64 (119)
T ss_dssp CHHHHHHHHHHHHS--------------SCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTCCC--SSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------------cCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCCCC--CCHHHHHHHHH
Confidence 45566666666644 235666666777666553 5677777777666 66643 36677777777
Q ss_pred hcCChHHHHHHHHHHh
Q 048235 324 RAGKVELLEITWEHLA 339 (455)
Q Consensus 324 ~~g~~~~a~~~~~~~~ 339 (455)
+.|-++.. +.|..|.
T Consensus 65 ~~glI~~~-~~w~~m~ 79 (119)
T 1wty_A 65 QVGLLPED-PFWLEML 79 (119)
T ss_dssp HHTSSCCC-HHHHHHH
T ss_pred HcCCCCcH-HHHHHHH
Confidence 77776555 4555554
No 309
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=37.44 E-value=3e+02 Score=26.79 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhc
Q 048235 12 SIAVTLGQAGHIKELFDVIDSMRS 35 (455)
Q Consensus 12 ~li~~~~~~g~~~~A~~~~~~~~~ 35 (455)
.+|-.|.|+|++++|.++.++...
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~ 180 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKA 180 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGG
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhh
Confidence 377889999999999999987753
No 310
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=36.77 E-value=1.6e+02 Score=23.57 Aligned_cols=36 Identities=8% Similarity=0.041 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHH
Q 048235 127 LAYKVLVNTLWR---EGKTDEAVSAVEDMERRGIVGSAA 162 (455)
Q Consensus 127 ~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 162 (455)
.....+|+++.+ ..+.+.|+-.+-+|++.|..|...
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~I 71 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFI 71 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 344445555543 467777777777777777555433
No 311
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=35.70 E-value=1.3e+02 Score=23.87 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=39.7
Q ss_pred HHHHHH---HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-----HHHHHHHHHHhhcC
Q 048235 283 MLDACA---AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGKV-----ELLEITWEHLARAD 342 (455)
Q Consensus 283 li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-----~~a~~~~~~~~~~~ 342 (455)
+|+++. +-.+.+.|+-++.+|++.|-.|....-..++.+....|.- ..|...++.....+
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 455543 4578999999999999999888766666666666666652 23444455444433
No 312
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=35.63 E-value=1.1e+02 Score=22.48 Aligned_cols=13 Identities=8% Similarity=-0.026 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHcC
Q 048235 179 EALMQMDKICKVA 191 (455)
Q Consensus 179 ~a~~~~~~m~~~~ 191 (455)
.|.++++.+.+.+
T Consensus 36 sa~ei~~~l~~~~ 48 (136)
T 1mzb_A 36 SAEDVYKALMEAG 48 (136)
T ss_dssp CHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhhC
Confidence 3444444444333
No 313
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=35.28 E-value=1.7e+02 Score=23.43 Aligned_cols=65 Identities=12% Similarity=0.035 Sum_probs=44.1
Q ss_pred HHHHHHHHH---HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHhhcCCC
Q 048235 280 FNTMLDACA---AEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK-----VELLEITWEHLARADRI 344 (455)
Q Consensus 280 ~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~ 344 (455)
.--+|+++. +-.+.+.|+-++.+|++.|-.|....-..++.+....|. +..|...++.....+..
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 334555554 457899999999999999988877666666666766665 33455566665555543
No 314
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.96 E-value=1.3e+02 Score=21.86 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhcc
Q 048235 199 YTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGL--FEEAMKLFQEMAEDS 260 (455)
Q Consensus 199 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~ 260 (455)
...++.-|...|+.++|.+.++++....-....+...+..++-+.+. .+.+..++..+...|
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~ 73 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 73 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 45566777777777777777777643101112223333333433322 244566666666555
No 315
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=34.93 E-value=42 Score=20.58 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 048235 74 EGAFWVLQQLKQQGQKPSATTYGLVMEVM 102 (455)
Q Consensus 74 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 102 (455)
++|...|-+|++..-.+...||...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 56777777776644344667777777766
No 316
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=34.69 E-value=92 Score=23.18 Aligned_cols=11 Identities=9% Similarity=-0.010 Sum_probs=4.3
Q ss_pred HHHHHHHHHHc
Q 048235 180 ALMQMDKICKV 190 (455)
Q Consensus 180 a~~~~~~m~~~ 190 (455)
|.++++.+.+.
T Consensus 36 a~ei~~~l~~~ 46 (145)
T 3eyy_A 36 PDDILGEVRKT 46 (145)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 33334333333
No 317
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=34.63 E-value=70 Score=18.69 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=12.7
Q ss_pred ChHHHHHHHHHHhhcCCCCCh
Q 048235 327 KVELLEITWEHLARADRITPP 347 (455)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~ 347 (455)
++..|.++++.+.+.+..|+.
T Consensus 8 Dv~RaiELle~lq~sgevp~~ 28 (53)
T 1zl8_A 8 DVQRILELMEHVQKTGEVNNA 28 (53)
T ss_dssp HHHHHHHHHHHHGGGSSSTHH
T ss_pred HHHHHHHHHHHHHHcCCCCcH
Confidence 455666666666666655554
No 318
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=34.49 E-value=2.2e+02 Score=24.45 Aligned_cols=70 Identities=13% Similarity=0.116 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHhhcCCCCChH
Q 048235 278 YTFNTMLDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK--VELLEITWEHLARADRITPPA 348 (455)
Q Consensus 278 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~ 348 (455)
.....++.-|...|+.++|.+.++++....+.+ ......+..++-+.++ .+...+++..+.+.+..+++.
T Consensus 167 kki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 167 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 345678888999999999999999886432222 2344445555554433 345677888888777766653
No 319
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=34.48 E-value=56 Score=25.88 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=15.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCC
Q 048235 318 MILDASRAGKVELLEITWEHLARADRI 344 (455)
Q Consensus 318 ll~~~~~~g~~~~a~~~~~~~~~~~~~ 344 (455)
.+..|.+.|.+++|.+++++.......
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~ 149 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNS 149 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCC
Confidence 344577777777777777776555433
No 320
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.20 E-value=4e+02 Score=27.31 Aligned_cols=88 Identities=10% Similarity=-0.024 Sum_probs=56.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------------
Q 048235 167 LARCLCSAGKCEEALMQMDKICKVANKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSP------------------ 228 (455)
Q Consensus 167 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------------------ 228 (455)
++..+...|..+-|.++. .. .+.+...--.+..+|...|++++|...|++...++..
T Consensus 816 l~~~L~~~~~~~~a~eL~----~~-~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----GW-LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----GG-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHHHH----hh-cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence 445555666666554432 21 2224333345778888999999999999876433111
Q ss_pred -----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048235 229 -----NLVTCNIMVKAYLEHGLFEEAMKLFQEMAED 259 (455)
Q Consensus 229 -----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 259 (455)
...-|.-++..|-+.+.++.+.++-+..++.
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1124666777788888888888888888764
No 321
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=33.99 E-value=68 Score=25.84 Aligned_cols=152 Identities=5% Similarity=-0.021 Sum_probs=73.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh--HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 048235 64 LNACVRRKQWEGAFWVLQQLKQQGQKPSATT--YGLVMEVMLACGKYNLVYEFFRKVQKSYIPNALAYKVLVNTLWREGK 141 (455)
Q Consensus 64 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 141 (455)
+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++.-......+..-.+ .+...+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT-AAHLACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC-HHHHHHHcCC
Confidence 3445678999888888887777776554321 112344456778876655554421111112222222 3334456677
Q ss_pred hHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHH---HHHHHHHHHHhcCCHHHH
Q 048235 142 TDEAVSAVEDMERRGIVG---SAALYYDLARCLCSAGKCEEALMQMDKICKVANKPLVV---SYTGLIQACLDSGNIQNA 215 (455)
Q Consensus 142 ~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~~~~~~a 215 (455)
.+-+..+++.....++.+ +..-.+ .+...+..|+.+-+ +.+.+.|..++.. .-.+.+...+..|+.+-+
T Consensus 92 ~~~~~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v 166 (241)
T 1k1a_A 92 PTCLRALLDSAAPGTLDLEARNYDGLT-ALHVAVNTECQETV----QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166 (241)
T ss_dssp HHHHHHHHHHSCTTSCCTTCCCTTSCC-HHHHHHHHTCHHHH----HHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCCccccccccCcCCCc-HHHHHHHcCCHHHH----HHHHHcCCCcccccccCCCcHHHHHHHcCCHHHH
Confidence 766655554432111111 111111 22233455665444 4444455443321 122334445567777766
Q ss_pred HHHHHH
Q 048235 216 AYIFNQ 221 (455)
Q Consensus 216 ~~~~~~ 221 (455)
..+++.
T Consensus 167 ~~Ll~~ 172 (241)
T 1k1a_A 167 QLLLQH 172 (241)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 655543
No 322
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=33.35 E-value=1.3e+02 Score=22.92 Aligned_cols=13 Identities=8% Similarity=-0.225 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 048235 177 CEEALMQMDKICK 189 (455)
Q Consensus 177 ~~~a~~~~~~m~~ 189 (455)
.-.|.++++.+.+
T Consensus 48 h~sA~eI~~~l~~ 60 (162)
T 4ets_A 48 HYTPESLYMEIKQ 60 (162)
T ss_dssp CBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 3333333333333
No 323
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=32.75 E-value=68 Score=23.36 Aligned_cols=44 Identities=7% Similarity=0.091 Sum_probs=21.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048235 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327 (455)
Q Consensus 284 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 327 (455)
+..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 33333344444555555555554444444455555555554444
No 324
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=32.70 E-value=4.1e+02 Score=27.03 Aligned_cols=118 Identities=7% Similarity=-0.082 Sum_probs=52.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhc-CCHH
Q 048235 136 LWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVA-NKPLVVSYTGLIQACLDS-GNIQ 213 (455)
Q Consensus 136 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~-~~~~ 213 (455)
-.+.|..++-..+++...... +..--..++.+++...+.+...++++...... +++. .... ++.+.... ...+
T Consensus 736 ~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d~~~-~~~~v~~n~~g~~ 810 (909)
T 4fke_A 736 AIAQGGQDQWDFAWGQLQQAQ---LVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQ-DATS-TINSIASNVIGQP 810 (909)
T ss_dssp HHHHSCHHHHHHHHHHHHHCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHTTCTTTSCGG-GHHH-HHHHHHHSTTHHH
T ss_pred HHHhCCHHHHHHHHHHHHccC---CHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCchh-hHHH-HHHHHhcChHHHH
Confidence 334455555455555554432 22223445666666666666666666554432 2221 1222 22222221 1123
Q ss_pred HHHHHHHHH----HhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048235 214 NAAYIFNQM----KNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258 (455)
Q Consensus 214 ~a~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 258 (455)
.|.+.+..= .+....+...+..++...+..-..++-.+-++...+
T Consensus 811 ~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 811 LAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQLEQFKK 859 (909)
T ss_dssp HHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 333333321 112223334455666666655444444455555544
No 325
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=31.92 E-value=1.2e+02 Score=22.79 Aligned_cols=31 Identities=10% Similarity=0.054 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 048235 179 EALMQMDKICKVANKPLVVSYTGLIQACLDS 209 (455)
Q Consensus 179 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 209 (455)
.|.++++.+.+.+...+..|.-.-+..+...
T Consensus 35 sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 65 (150)
T 2w57_A 35 SAEELYKKLIDLGEEIGLATVYRVLNQFDDA 65 (150)
T ss_dssp EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 3444444444433333333333333333333
No 326
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.48 E-value=1.7e+02 Score=22.28 Aligned_cols=61 Identities=11% Similarity=0.022 Sum_probs=44.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCC--CHhHHHHHHH-H-----HHhcCCHHHHHHHH
Q 048235 9 AYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEP--DIVVYNAVLN-A-----CVRRKQWEGAFWVL 80 (455)
Q Consensus 9 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~~~~~~a~~~~ 80 (455)
+|...+..+- .|++-+|.++|+..-. ....+ ....|..||+ . ..+.|+...|..++
T Consensus 35 ~~~~~i~lFn-~g~yfeaHEvLEe~W~---------------~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll 98 (161)
T 2ijq_A 35 AVVHGVRLYN-SGEFHESHDCFEDEWY---------------NYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLF 98 (161)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHTT---------------TTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHh-CCCchHHHHHHHHHHH---------------hcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3444444444 4999999999999875 22234 4567888888 2 34679999999999
Q ss_pred HHHHH
Q 048235 81 QQLKQ 85 (455)
Q Consensus 81 ~~m~~ 85 (455)
.+...
T Consensus 99 ~~Al~ 103 (161)
T 2ijq_A 99 RTSLQ 103 (161)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88876
No 327
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=31.39 E-value=41 Score=20.60 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=18.5
Q ss_pred cCChHHHHHHHHHHhhcCCCCChH
Q 048235 325 AGKVELLEITWEHLARADRITPPA 348 (455)
Q Consensus 325 ~g~~~~a~~~~~~~~~~~~~~~~~ 348 (455)
.-+++.|...|.++...+.+|+++
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 457888888888888777777764
No 328
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=31.27 E-value=2.3e+02 Score=30.18 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=26.8
Q ss_pred hcCChhHHHHHHHHHHhcccccchhhccCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048235 242 EHGLFEEAMKLFQEMAEDSNHINREYDKKGLVIPDIYTFNTMLDACAAEKRWDDLELVYKRM 303 (455)
Q Consensus 242 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 303 (455)
.++++..|++++.++.+.. |+...|..++..+...| |+....+.+++
T Consensus 1296 ~~~~~g~~~k~l~k~~~~k--------------~~~~~~~~~~~~~~~l~-w~h~~~~~~~~ 1342 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIEEK--------------RTRDHFVELAAINGALG-HEHIRTVINRM 1342 (1354)
T ss_dssp HHTCHHHHHHHHHHHHHHT--------------CCHHHHHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc--------------ccHHHHHHHHHHHHHcC-CHHHHHHHHhh
Confidence 4666667777776666643 56666666666655555 23333444443
No 329
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=30.39 E-value=1.2e+02 Score=24.05 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=12.9
Q ss_pred HHHHHhcCChhHHHHHHHHh
Q 048235 14 AVTLGQAGHIKELFDVIDSM 33 (455)
Q Consensus 14 i~~~~~~g~~~~A~~~~~~~ 33 (455)
+...++.|+++....+++.-
T Consensus 10 l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHhc
Confidence 45556677777777766653
No 330
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=29.22 E-value=65 Score=23.84 Aligned_cols=44 Identities=14% Similarity=0.152 Sum_probs=20.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048235 284 LDACAAEKRWDDLELVYKRMLHHGLHFNAKRHLRMILDASRAGK 327 (455)
Q Consensus 284 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 327 (455)
+..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 33333333344455555555554444444455455555544443
No 331
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=29.16 E-value=22 Score=28.79 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=23.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhh--HHHHHHHHHHcCChhHHHHHHH
Q 048235 67 CVRRKQWEGAFWVLQQLKQQGQKPSATT--YGLVMEVMLACGKYNLVYEFFR 116 (455)
Q Consensus 67 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~ 116 (455)
.++.|+++.. +.+.+.|..++... -.+.+...+..|+.+.+..+++
T Consensus 16 A~~~g~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 16 ATQYGIYERC----RELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCChHHH----HHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 4566765544 44444555443221 1123445566777766555544
No 332
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=28.06 E-value=1e+02 Score=22.38 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=18.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048235 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLC 172 (455)
Q Consensus 132 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 172 (455)
++..+...+..-.|.++++.+.+.+...+..|....+..+.
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~ 56 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMA 56 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 33334444444455555555555443344433333333333
No 333
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=27.86 E-value=2e+02 Score=27.29 Aligned_cols=72 Identities=8% Similarity=-0.000 Sum_probs=34.6
Q ss_pred ChhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048235 107 KYNLVYEFFRKVQKSYI-PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEA 180 (455)
Q Consensus 107 ~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 180 (455)
+.+........+..+.+ .+..-..-++..|.+.|-.+.|.+++..+-.+-+. +...+ .-+..|+++|+++.+
T Consensus 496 ~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 496 TRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp CHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred chhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 34445566666666655 56667777888888888888888888877655322 33344 445667777877654
No 334
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=26.82 E-value=90 Score=27.27 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=16.1
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048235 273 VIPDIYTFNTMLDACAAEKRWDDLELVYKRMLHHG 307 (455)
Q Consensus 273 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 307 (455)
+.|...++.-++..|.+.=.++.+..+|+.+...|
T Consensus 224 i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 224 LTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp CCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred CCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 44444444444444444444445555555444443
No 335
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=26.68 E-value=2.3e+02 Score=22.07 Aligned_cols=91 Identities=10% Similarity=0.138 Sum_probs=55.4
Q ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcCC--------------
Q 048235 59 VYNAVLNA-CVRRKQWEGAFWVLQQLKQQGQKPSATTYGLVMEVMLACGKYNLVYEFFRKVQKSYI-------------- 123 (455)
Q Consensus 59 ~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------- 123 (455)
-|..|+.. +.-.|.+.+++-++..+- ..+..-|..| +|-+..++..|...++.+.....
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~lN----T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ff 107 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHKLN----TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMF 107 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHTCC----BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTS
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHhcc----hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceee
Confidence 55555543 345677777776654321 1133334444 35677888888888887764322
Q ss_pred ---CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048235 124 ---PNA-LAYKVLVNTLWREGKTDEAVSAVEDMERR 155 (455)
Q Consensus 124 ---~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 155 (455)
.|. ..|+.+...+.+.|+.++|+..+..--..
T Consensus 108 vd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 108 VDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp CCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 122 35666777788899999999988654433
No 336
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.15 E-value=93 Score=22.94 Aligned_cols=31 Identities=10% Similarity=0.005 Sum_probs=12.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 048235 133 VNTLWREGKTDEAVSAVEDMERRGIVGSAAL 163 (455)
Q Consensus 133 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 163 (455)
+..+...+..-.|.++++.+.+.+...+..|
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aT 50 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTT 50 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHH
Confidence 3333333334444444444444443333333
No 337
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.13 E-value=5.7e+02 Score=26.19 Aligned_cols=106 Identities=10% Similarity=-0.013 Sum_probs=63.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------------------
Q 048235 132 LVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAGKCEEALMQMDKICKVANK------------------ 193 (455)
Q Consensus 132 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~------------------ 193 (455)
++..+...|..+-|.++. . ..+.++..-..+..+|...|++++|...|++.-. |+.
T Consensus 816 l~~~L~~~~~~~~a~eL~----~-~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----G-WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----G-GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHH----h-hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 445555566665544322 1 1233444345588889999999999999987431 111
Q ss_pred -----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCHH----HHHHHHHHHHhc
Q 048235 194 -----PLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFC-SPNLV----TCNIMVKAYLEH 243 (455)
Q Consensus 194 -----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~~~li~~~~~~ 243 (455)
....-|..++..+-+.+-++.+.++-+...+.. ..|.. .|+.++++.+..
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 012356777777778888888887777766542 22322 455555555543
No 338
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.39 E-value=1.3e+02 Score=19.14 Aligned_cols=39 Identities=10% Similarity=0.090 Sum_probs=26.6
Q ss_pred HHHHHHHHhhcCCCCChHhHHHHHHHHhhccchHHHHHHhh
Q 048235 331 LEITWEHLARADRITPPALIKERFCNRLENKDYGSAISCLV 371 (455)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 371 (455)
-.++|.+|....+..|+.++...+.. ..++.+....++.
T Consensus 10 d~qvfheLkQrFPEvPd~VVsqc~~q--N~~Nl~aC~~~L~ 48 (75)
T 2dae_A 10 DFQVLHDLRQKFPEVPEVVVSRCMLQ--NNNNLDACCAVLS 48 (75)
T ss_dssp CHHHHHHHHHHSSSSCHHHHHHHHTT--TTSCSHHHHHHHH
T ss_pred HHHHHHHHHHhcccCcHHHHHHHHHH--hccCHHHHHHHHH
Confidence 46788999999999998554433322 4566777777665
No 339
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=24.08 E-value=1.8e+02 Score=25.34 Aligned_cols=78 Identities=14% Similarity=0.069 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCChHhHHHHHH-------HHhhccchHHHHHHh
Q 048235 298 LVYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARADRITPPALIKERFC-------NRLENKDYGSAISCL 370 (455)
Q Consensus 298 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~A~~~~ 370 (455)
++++.+.+.|+.|...++.-++..+.+.=.++.+..+|+.+...+.....-.+.-.++ .+++..++++.+.++
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 4556666778888777776677777777789999999999988764322111111111 112457888888888
Q ss_pred hhcCC
Q 048235 371 VSHPV 375 (455)
Q Consensus 371 ~~~~~ 375 (455)
++.|.
T Consensus 310 ~~~p~ 314 (345)
T 2qfz_A 310 QNLPT 314 (345)
T ss_dssp TSCSC
T ss_pred HcCCC
Confidence 87764
No 340
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=23.98 E-value=1.8e+02 Score=27.54 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHH
Q 048235 195 LVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEA 249 (455)
Q Consensus 195 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 249 (455)
+..-...++..|.+.|-.+.|.++++.+....-.+...+ ..+..|+++|+++.+
T Consensus 515 Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 515 TNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHH-HHHHHHHHcCChhhc
Confidence 455677888999999999999999998866533444455 455667788877654
No 341
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.53 E-value=1.5e+02 Score=19.02 Aligned_cols=8 Identities=0% Similarity=0.600 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 048235 111 VYEFFRKV 118 (455)
Q Consensus 111 a~~~~~~~ 118 (455)
+.++++.+
T Consensus 36 ~~el~~~l 43 (83)
T 2fu4_A 36 AEDLYKRL 43 (83)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 342
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.68 E-value=3.1e+02 Score=22.18 Aligned_cols=49 Identities=14% Similarity=0.204 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCCCCHHH--------HHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 212 IQNAAYIFNQMKNFCSPNLVT--------CNIMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~--------~~~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
.+.|+.+|+.+....+.+... -...+..|.+.|.+++|.+++++.....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~ 144 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKD 144 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 455666676665543222111 1234667889999999999999987753
No 343
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=22.53 E-value=3.3e+02 Score=22.44 Aligned_cols=122 Identities=6% Similarity=-0.045 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 048235 124 PNALAYKVLVNTLWREGKTDEAVSAVEDMERRGIVGSAALYYDLARCLCSAG-KCEEALMQMDKICKVANKPLVVSYTGL 202 (455)
Q Consensus 124 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~l 202 (455)
++..+-...+.++...|+.+ +...+..+... ++...-...+.++...+ ....+...+..+.. .++..+-...
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A 212 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKA-TIPLLINLLKD---PNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEA 212 (280)
T ss_dssp SCHHHHHHHHHHHHTC---C-CHHHHHHHHTC---SSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHH
Confidence 45555555555666555532 33333333322 23333333333333333 12233333333332 2345555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048235 203 IQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAE 258 (455)
Q Consensus 203 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 258 (455)
+.++.+.++......+...+.. ++ .-...+.++...|.. .+...+.++..
T Consensus 213 ~~aL~~~~~~~~~~~L~~~l~d---~~--vr~~a~~aL~~i~~~-~~~~~L~~~l~ 262 (280)
T 1oyz_A 213 IIGLSYRKDKRVLSVLCDELKK---NT--VYDDIIEAAGELGDK-TLLPVLDTMLY 262 (280)
T ss_dssp HHHHHHTTCGGGHHHHHHHHTS---SS--CCHHHHHHHHHHCCG-GGHHHHHHHHT
T ss_pred HHHHHHhCCHhhHHHHHHHhcC---cc--HHHHHHHHHHhcCch-hhhHHHHHHHh
Confidence 5666666654433333333322 22 122334445555542 34444444444
No 344
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.11 E-value=4.9e+02 Score=24.37 Aligned_cols=66 Identities=9% Similarity=-0.005 Sum_probs=45.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhhcCCccccccccccccCCCCCCCH--hHHH-HHHHHHHhcCCHHHHHHHHHHH
Q 048235 7 TVAYRSIAVTLGQAGHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDI--VVYN-AVLNACVRRKQWEGAFWVLQQL 83 (455)
Q Consensus 7 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~li~~~~~~~~~~~a~~~~~~m 83 (455)
+..+|.++..|...+.++.|..+..+..-. ....++. ..|. -+...+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP--------------~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYP--------------HTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--------------TTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCC--------------cccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 346889999999999999999999988521 1111111 1222 2345667789999999988887
Q ss_pred HHc
Q 048235 84 KQQ 86 (455)
Q Consensus 84 ~~~ 86 (455)
.+.
T Consensus 297 ~rk 299 (523)
T 4b4t_S 297 IRK 299 (523)
T ss_dssp TSS
T ss_pred HHh
Confidence 765
No 345
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=21.89 E-value=3.7e+02 Score=23.94 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhcCC--hhHHHHHHHHhh
Q 048235 9 AYRSIAVTLGQAGH--IKELFDVIDSMR 34 (455)
Q Consensus 9 ~~~~li~~~~~~g~--~~~A~~~~~~~~ 34 (455)
+|..+|..+....+ .++|..+++.+.
T Consensus 25 t~~~il~~l~~g~~Ls~eEa~~~~~~i~ 52 (377)
T 3r88_A 25 SWPQILGRLTDNRDLARGQAAWAMDQIM 52 (377)
T ss_dssp CHHHHHHHHHTTCCCCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 45555555554433 344555555555
No 346
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=21.87 E-value=2.3e+02 Score=20.80 Aligned_cols=18 Identities=11% Similarity=0.272 Sum_probs=10.0
Q ss_pred HHHHHhcCChhHHHHHHH
Q 048235 14 AVTLGQAGHIKELFDVID 31 (455)
Q Consensus 14 i~~~~~~g~~~~A~~~~~ 31 (455)
+...++.|+.+....+++
T Consensus 12 l~~A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHHHHTCHHHHHHHCC
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 334455677666655554
No 347
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.78 E-value=1.1e+02 Score=25.03 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=15.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048235 66 ACVRRKQWEGAFWVLQQLKQQGQKPS 91 (455)
Q Consensus 66 ~~~~~~~~~~a~~~~~~m~~~~~~p~ 91 (455)
..++.|+.+....+++.+.+.|..++
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 34456666666666666666665555
No 348
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.61 E-value=97 Score=23.98 Aligned_cols=57 Identities=11% Similarity=0.063 Sum_probs=26.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 048235 204 QACLDSGNIQNAAYIFNQMKNF-CSPNLVTCNIMVKAYLEHGLFEEAMKLFQEMAEDS 260 (455)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 260 (455)
...+..|+.+-+..+++.-... ...+..-.+.+..+.........-.++.+.+.+.|
T Consensus 111 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~g 168 (201)
T 3hra_A 111 IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG 168 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCC
Confidence 3344566766665555543111 22233333344443333222333356667777776
No 349
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.11 E-value=1.9e+02 Score=20.65 Aligned_cols=43 Identities=7% Similarity=0.072 Sum_probs=26.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 048235 299 VYKRMLHHGLHFNAKRHLRMILDASRAGKVELLEITWEHLARA 341 (455)
Q Consensus 299 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 341 (455)
+|+.+....+.|+...-..-+..+...++++.|..+...+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 3445555566555433333344457888999998888777653
No 350
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=21.11 E-value=2.3e+02 Score=21.13 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048235 278 YTFNTMLDACAAEKRWDDLELVYKRMLH-HGLHF---NAKRHLRMILDASRAGKVELLEITWEHLAR 340 (455)
Q Consensus 278 ~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 340 (455)
.....++..+... ++.++++.+...+ .|+.| ++.++..++....+.|-++.. +.|..|..
T Consensus 41 ~~~dg~iq~fe~t--~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~-~~w~~m~~ 104 (146)
T 1jog_A 41 TLIAGAIQKFEFV--YELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDM-SKWVAYRD 104 (146)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcH-HHHHHHHH
Confidence 3444555544443 5677788777776 66654 245777888888888887766 56666644
No 351
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.86 E-value=3.2e+02 Score=21.73 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=11.8
Q ss_pred cCChHHHHHHHHHHHHCC
Q 048235 139 EGKTDEAVSAVEDMERRG 156 (455)
Q Consensus 139 ~g~~~~a~~~~~~m~~~~ 156 (455)
..+.+.|+-.+-+|++.|
T Consensus 27 GSDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG 44 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 456666666666666666
No 352
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=20.85 E-value=1.3e+02 Score=18.35 Aligned_cols=23 Identities=26% Similarity=0.318 Sum_probs=13.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC
Q 048235 69 RRKQWEGAFWVLQQLKQQGQKPS 91 (455)
Q Consensus 69 ~~~~~~~a~~~~~~m~~~~~~p~ 91 (455)
..|+++.|...+-.|...+..|+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCC
Confidence 34666666666666655554443
No 353
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.64 E-value=3.2e+02 Score=21.66 Aligned_cols=22 Identities=14% Similarity=-0.062 Sum_probs=14.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCC
Q 048235 139 EGKTDEAVSAVEDMERRGIVGS 160 (455)
Q Consensus 139 ~g~~~~a~~~~~~m~~~~~~~~ 160 (455)
..+.+.|+-.+-+|++.|..|.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~ 41 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPL 41 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 4667777777777777765443
No 354
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=20.62 E-value=6.8e+02 Score=25.45 Aligned_cols=89 Identities=10% Similarity=0.078 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCH---HHHHHHHHHHHHcC----CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048235 166 DLARCLCSAGKC---EEALMQMDKICKVA----NKPLVVSYTGLIQACLDSGNIQNAAYIFNQMKNFCSPNLVTCNIMVK 238 (455)
Q Consensus 166 ~l~~~~~~~g~~---~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 238 (455)
.++...|..|.. +.|.+.|+.....+ ++||.. ..+...-.+.|..+.-..+++.... ..+..--..++.
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~--~~~~~ek~~ll~ 766 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQ--AQLVNEADKLRS 766 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHH--CCSHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHc--cCCHHHHHHHHH
Confidence 356666776663 45666666655431 344422 2222222344665555555555554 233344456677
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 048235 239 AYLEHGLFEEAMKLFQEMAE 258 (455)
Q Consensus 239 ~~~~~~~~~~a~~~~~~m~~ 258 (455)
+++...+.....+++...+.
T Consensus 767 aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTC
T ss_pred HhCCCCCHHHHHHHHHHHhC
Confidence 77777777666666666554
No 355
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.55 E-value=2.9e+02 Score=21.18 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=19.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048235 63 VLNACVRRKQWEGAFWVLQQLKQQGQKPSA 92 (455)
Q Consensus 63 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 92 (455)
.+...+..|+.+.-.++.+.+.+.|..++.
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 334445566666666777777777776654
No 356
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=20.51 E-value=6e+02 Score=24.72 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=17.1
Q ss_pred hhccchHHHHHHhhhcCCCC
Q 048235 358 LENKDYGSAISCLVSHPVSG 377 (455)
Q Consensus 358 ~~~~~~~~A~~~~~~~~~~~ 377 (455)
.+.|+++.|++.+++...-|
T Consensus 549 ~~~g~~~~AL~~i~~L~llP 568 (661)
T 2qx5_A 549 YFNKQWQETLSQMELLDLLP 568 (661)
T ss_dssp HHTTCHHHHHHHHHHTSCSC
T ss_pred HHcCCHHHHHHHHHhCCCCC
Confidence 38899999999999987655
No 357
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.45 E-value=1.8e+02 Score=19.72 Aligned_cols=39 Identities=8% Similarity=-0.079 Sum_probs=30.1
Q ss_pred CChhHHHHHHHHhhcCCccccccccccccCCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 048235 21 GHIKELFDVIDSMRSLPKKKFKTGTLERWDPRLEPDIVVYNAVLNACVRRKQWEGAFW 78 (455)
Q Consensus 21 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 78 (455)
...+.|.++++.+. .....+|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~-------------------~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLE-------------------TRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHT-------------------TSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHH-------------------HcChHHHHHHHHHHHHcCcHHHHHH
Confidence 46788889998887 4566889999999987787665543
No 358
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.19 E-value=2.9e+02 Score=21.02 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=32.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC--cHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 048235 173 SAGKCEEALMQMDKICKVANKP--LVVSYTGLIQ-A-----CLDSGNIQNAAYIFNQMKN 224 (455)
Q Consensus 173 ~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~~~~ 224 (455)
..|++-+|-++++..-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477777777777776665445 4555566665 2 2345777777777766644
Done!