BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048238
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 181 bits (458), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 129/404 (31%), Positives = 208/404 (51%), Gaps = 34/404 (8%)
Query: 8 TRATKLMQPHFERALESLPHVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYVMCVSSS 67
TR+ ++ F+ +E + +V D F D A +F P ++FY V+
Sbjct: 91 TRSNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLH 150
Query: 68 VGANRSLSGVQSDDELVTPPEFPW-IKITKKDFDPPITDPEPKGPQFELFIDQIVSTSNS 126
+ + EL P P + + KDF P D K ++ + +
Sbjct: 151 LPKLDETVSCEFR-ELTEPLMLPGCVPVAGKDFLDPAQDR--KDDAYKWLLHNTKRYKEA 207
Query: 127 YGMIVNSFYELEP--LFADHCNRVVKPKSWCVGPLCLAELSPKNEEPKNELSKPAWIRWL 184
G++VN+F+ELEP + A + KP + VGPL K E + E S+ ++WL
Sbjct: 208 EGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNIG---KQEAKQTEESE--CLKWL 262
Query: 185 DRKLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRK----AESELGD--- 237
D + SV+YV+FGS ++ +QL E+A GL S+ FLWVIR A S D
Sbjct: 263 DNQ--PLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHS 320
Query: 238 ----------GFEERVKGRGLVVRDWVNQKEILWHESVQGFLSHCGWNSALESICAGVPI 287
GF ER K RG V+ W Q ++L H S GFL+HCGWNS LES+ +G+P+
Sbjct: 321 QTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPL 380
Query: 288 LAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGEKGEKART 347
+AWP+ A+Q +NA +++E+I+ ALR D G V+ + + + V+ LM GE+G+ R
Sbjct: 381 IAWPLYAEQKMNAVLLSEDIRAALRPRAGDD---GLVRREEVARVVKGLMEGEEGKGVRN 437
Query: 348 KVKELSEIARKAMEEEKGSSWRCLDMLLDETCKYEQQLHDDKNN 391
K+KEL E A + ++++ G+S + L ++ + ++++L + N+
Sbjct: 438 KMKELKEAACRVLKDD-GTSTKALSLVALKWKAHKKELEQNGNH 480
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 150 bits (380), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 116/381 (30%), Positives = 186/381 (48%), Gaps = 44/381 (11%)
Query: 24 SLPHVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYVMCVSSSVGANRSL--SGVQ--S 79
++P V+ +VSD + +T+ +A +F P +++ + C +V RS G+
Sbjct: 115 NVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSS---ACSLLNVMHFRSFVERGIIPFK 171
Query: 80 DDELVT----PPEFPWIKITK----KDFDPPITDPEPKGPQFELFIDQIVSTSNSYGMIV 131
D+ +T + WI K KD I P E FI+ + +++
Sbjct: 172 DESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILL 231
Query: 132 NSFYELEPLFADHCNRVVKPKSWCVGPL-CLAELSPKNEEPKNELSKPAW------IRWL 184
N+F ELE + + + P + +GPL L + +P+ + + L W + WL
Sbjct: 232 NTFNELESDVINALSSTI-PSIYPIGPLPSLLKQTPQIHQ-LDSLDSNLWKEDTECLDWL 289
Query: 185 DRKLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRK-----AESELGDGF 239
+ K E SV+YV FGS ++ +QL E A GL K +FLW+IR F
Sbjct: 290 ESK--EPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEF 347
Query: 240 EERVKGRGLVVRDWVNQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLN 299
+ RGL+ W Q ++L H S+ GFL+HCGWNS ESICAGVP+L WP ADQP +
Sbjct: 348 TNEIADRGLIA-SWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTD 406
Query: 300 ARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGEKGEKARTKVKELSEIARKA 359
R + E ++ + ++T VK + L K + E++ G+KG+K + K EL +KA
Sbjct: 407 CRFICNEWEIGMEIDTN-------VKREELAKLINEVIAGDKGKKMKQKAMELK---KKA 456
Query: 360 MEEEK--GSSWRCLDMLLDET 378
E + G S+ L+ ++ +
Sbjct: 457 EENTRPGGCSYMNLNKVIKDV 477
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 120/385 (31%), Positives = 199/385 (51%), Gaps = 44/385 (11%)
Query: 16 PHFERALESL--PHVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYVMCVSSSVGANRS 73
PH + ++++ V +V D F +D N+FG P ++F N + + S+ NR
Sbjct: 101 PHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSL-KNRQ 159
Query: 74 LSGV----QSDDELVTPP----EFPWIKITKKDFDPPITDPEPKGPQFELFIDQIVSTSN 125
+ V D +L+ P + P + F+ K + + +
Sbjct: 160 IEEVFDDSDRDHQLLNIPGISNQVPSNVLPDACFN--------KDGGYIAYYKLAERFRD 211
Query: 126 SYGMIVNSFYELE----PLFADHCNRVVKPKSWCVGPLC--LAELSPKNEEPKNELSKPA 179
+ G+IVN+F +LE DH ++ P + VGPL + +PK ++ +++L
Sbjct: 212 TKGIIVNTFSDLEQSSIDALYDHDEKI--PPIYAVGPLLDLKGQPNPKLDQAQHDL---- 265
Query: 180 WIRWLDRKLDEGSSVMYVAFGSQA-EISAQQLKEIATGLEQSKVNFLWVIRKAESELGDG 238
++WLD + D+ SV+++ FGS Q++EIA GL+ S V FLW + +G
Sbjct: 266 ILKWLDEQPDK--SVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEG 323
Query: 239 FEE--RVKGRGLVVRDWVNQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQ 296
F E ++G+G++ W Q E+L H+++ GF+SHCGWNS LES+ GVPIL WPI A+Q
Sbjct: 324 FLEWMELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQ 382
Query: 297 PLNA-RMVTE-EIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGEKGEKARTKVKELSE 354
LNA R+V E + + LRV+ GS V + +EK +++LM +K KV+E+ E
Sbjct: 383 QLNAFRLVKEWGVGLGLRVDYRKGS--DVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKE 438
Query: 355 IARKAMEEEKGSSWRCLDMLLDETC 379
++R A+ + GSS + L+D+
Sbjct: 439 MSRNAV-VDGGSSLISVGKLIDDIT 462
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 144 bits (364), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 120/385 (31%), Positives = 199/385 (51%), Gaps = 44/385 (11%)
Query: 16 PHFERALESL--PHVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYVMCVSSSVGANRS 73
PH + ++++ V +V D F +D N+FG P ++F N + + S+ NR
Sbjct: 101 PHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSL-KNRQ 159
Query: 74 LSGV----QSDDELVTPP----EFPWIKITKKDFDPPITDPEPKGPQFELFIDQIVSTSN 125
+ V D +L+ P + P + F+ K + + +
Sbjct: 160 IEEVFDDSDRDHQLLNIPGISNQVPSNVLPDACFN--------KDGGYIAYYKLAERFRD 211
Query: 126 SYGMIVNSFYELE----PLFADHCNRVVKPKSWCVGPLC--LAELSPKNEEPKNELSKPA 179
+ G+IVN+F +LE DH ++ P + VGPL + +PK ++ +++L
Sbjct: 212 TKGIIVNTFSDLEQSSIDALYDHDEKI--PPIYAVGPLLDLKGQPNPKLDQAQHDL---- 265
Query: 180 WIRWLDRKLDEGSSVMYVAFGSQA-EISAQQLKEIATGLEQSKVNFLWVIRKAESELGDG 238
++WLD + D+ SV+++ FGS Q++EIA GL+ S V FLW + +G
Sbjct: 266 ILKWLDEQPDK--SVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEG 323
Query: 239 FEE--RVKGRGLVVRDWVNQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQ 296
F E ++G+G++ W Q E+L H+++ GF+SHCGWNS LES+ GVPIL WPI A+Q
Sbjct: 324 FLEWMELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQ 382
Query: 297 PLNA-RMVTE-EIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGEKGEKARTKVKELSE 354
LNA R+V E + + LRV+ GS V + +EK +++LM +K KV+E+ E
Sbjct: 383 QLNAFRLVKEWGVGLGLRVDYRKGS--DVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKE 438
Query: 355 IARKAMEEEKGSSWRCLDMLLDETC 379
++R A+ + GSS + L+D+
Sbjct: 439 MSRNAV-VDGGSSLISVGKLIDDIT 462
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 117/392 (29%), Positives = 190/392 (48%), Gaps = 47/392 (11%)
Query: 7 FTRAT--KLMQPHFERALESLPHVSFMVSDGFLWWTLDSANKFGFPRFVFY--GMNN--- 59
FTRA Q E+ VS +V+D F+W+ D A + G F+ G N+
Sbjct: 90 FTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLST 149
Query: 60 --YVMCVSSSVGANRSLSGVQS-DDELVTPPEFPWI-KITKKDFDPPITDPEPKGPQFEL 115
Y+ + +G +SG+Q +DEL+ P + K+ +D I G L
Sbjct: 150 HVYIDEIREKIG----VSGIQGREDELLN--FIPGMSKVRFRDLQEGIV----FGNLNSL 199
Query: 116 F------IDQIVSTSNSYGMIVNSFYELEPLFADHCNRVVKPKSWCVGPLCLAELSPKNE 169
F + Q++ + + + +NSF EL+ + +K +GP L ++P
Sbjct: 200 FSRMLHRMGQVLPKATA--VFINSFEELDDSLTNDLKSKLK-TYLNIGPFNL--ITPPPV 254
Query: 170 EPKNELSKPAWIRWLDRKLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIR 229
P ++WL + + +SV+Y++FG+ ++ ++ LE S+V F+W +R
Sbjct: 255 VPNTT----GCLQWLKER--KPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLR 308
Query: 230 -KAESELGDGFEERVKGRGLVVRDWVNQKEILWHESVQGFLSHCGWNSALESICAGVPIL 288
KA L +GF E+ +G G+VV W Q E+L HE+V F++HCGWNS ES+ GVP++
Sbjct: 309 DKARVHLPEGFLEKTRGYGMVV-PWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLI 367
Query: 289 AWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGEKGEKARTK 348
P DQ LN RMV + +++ +R+E G GL +++ EKG+K R
Sbjct: 368 CRPFFGDQRLNGRMVEDVLEIGVRIEG------GVFTKSGLMSCFDQILSQEKGKKLREN 421
Query: 349 VKELSEIARKAMEEEKGSSWRCLDMLLDETCK 380
++ L E A +A+ KGSS L+D K
Sbjct: 422 LRALRETADRAV-GPKGSSTENFITLVDLVSK 452
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 110/385 (28%), Positives = 174/385 (45%), Gaps = 56/385 (14%)
Query: 6 PFTRATKLMQPHFERAL-----ESLPHVSFMVSDGFLWWTLDSANKF---------GFPR 51
P K MQ +F+ + E+ +++ +V+D F W+ D A + P
Sbjct: 91 PIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPH 150
Query: 52 FVFYGMNNYVMCVSSSVGANRSLSGVQSDDELVTPPEFPWIKITK------KDFDPPITD 105
+ + Y + G+ + + V+S D L P FP +K + KD D P
Sbjct: 151 SLLTHV--YTDLIREKTGS-KEVHDVKSIDVL---PGFPELKASDLPEGVIKDIDVP--- 201
Query: 106 PEPKGPQFELFIDQI-VSTSNSYGMIVNSFYELEPLFADHCNRVVKPKSWCVGPLCLAEL 164
F + ++ + + + +NSF + PL + N K VGP L
Sbjct: 202 -------FATMLHKMGLELPRANAVAINSFATIHPLIENELNSKFK-LLLNVGPFNLTT- 252
Query: 165 SPKNEEPKNELS-KPAWIRWLDRKLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQSKVN 223
P+ ++S + + WLD+ E SSV+Y++FGS +L +A LE+
Sbjct: 253 ------PQRKVSDEHGCLEWLDQH--ENSSVVYISFGSVVTPPPHELTALAESLEECGFP 304
Query: 224 FLWVIRKAESE-LGDGFEERVKGRGLVVRDWVNQKEILWHESVQGFLSHCGWNSALESIC 282
F+W R E L GF ER K +G +V W Q EIL H SV FL+H GWNS LE I
Sbjct: 305 FIWSFRGDPKEKLPKGFLERTKTKGKIVA-WAPQVEILKHSSVGVFLTHSGWNSVLECIV 363
Query: 283 AGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGEKG 342
GVP+++ P DQ LN + +++ + V+ G + + ++K + M EKG
Sbjct: 364 GGVPMISRPFFGDQGLNTILTESVLEIGVGVD------NGVLTKESIKKALELTMSSEKG 417
Query: 343 EKARTKVKELSEIARKAMEEEKGSS 367
R K+ +L E A KA+E+ S+
Sbjct: 418 GIMRQKIVKLKESAFKAVEQNGTSA 442
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
Query: 192 SSVMYVAFGSQ-AEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVV 250
+ V+ + GS + + ++ IA+ L Q LW DG + G +
Sbjct: 21 NGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLWRF--------DGNKPDTLGLNTRL 72
Query: 251 RDWVNQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLN 299
W+ Q ++L H + F++H G N E+I G+P + P+ ADQP N
Sbjct: 73 YKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 250 VRDWVNQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTE 305
V WV Q +IL S F++H G S +E++ VP++A P +A+Q +NA + E
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE 362
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 18/136 (13%)
Query: 250 VRDWVNQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKV 309
V DWV Q IL + F++H G + E + P++A P DQ NA M+ + + V
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML-QGLGV 343
Query: 310 ALRVETCDGSVRGFVKWQGLEKTVRELMGGEKGEKARTKVKELSEIARKAMEEEKGSSWR 369
A ++ T + + L +T L+ + E AR + +E+A ++G + R
Sbjct: 344 ARKLATEEATA------DLLRETALALV--DDPEVARRLRRIQAEMA------QEGGTRR 389
Query: 370 CLDMLLDE-TCKYEQQ 384
D++ E ++E+Q
Sbjct: 390 AADLIEAELPARHERQ 405
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 20/123 (16%)
Query: 178 PAWIRWLDRKLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGD 237
PAW+ D ++Y+ G+ + + + L+ GL + L +
Sbjct: 232 PAWLS----SRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVL---------VAS 278
Query: 238 GFEERVKGRGLV-----VRDWVNQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPI 292
G V G G V + WV Q +L H V + H G + L ++ AGVP L++P
Sbjct: 279 GPSLDVSGLGEVPANVRLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPW 336
Query: 293 MAD 295
D
Sbjct: 337 AGD 339
>pdb|2WPV|A Chain A, Crystal Structure Of S. Cerevisiae Get4-Get5 Complex
pdb|2WPV|C Chain C, Crystal Structure Of S. Cerevisiae Get4-Get5 Complex
pdb|2WPV|E Chain E, Crystal Structure Of S. Cerevisiae Get4-Get5 Complex
pdb|2WPV|G Chain G, Crystal Structure Of S. Cerevisiae Get4-Get5 Complex
Length = 312
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 13/132 (9%)
Query: 134 FYELEPLFADHCNRVVKPKSWCVGPLCLAELSPKNEEPKNELSKPAWIRWL-------DR 186
+YE NR V+ KS+ +++ + + K S I +L +
Sbjct: 29 YYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEV 88
Query: 187 KLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGR 246
K+D+ S V ++ + S LK++ TG+ W I+ +E + GD + G
Sbjct: 89 KVDDISVARLVRLIAELDPSEPNLKDVITGMNN------WSIKFSEYKFGDPYLHNTIGS 142
Query: 247 GLVVRDWVNQKE 258
L+ D+V + E
Sbjct: 143 KLLEGDFVYEAE 154
>pdb|3LKU|A Chain A, Crystal Structure Of S. Cerevisiae Get4 In Complex With An
N-Terminal Fragment Of Get5
pdb|3LKU|C Chain C, Crystal Structure Of S. Cerevisiae Get4 In Complex With An
N-Terminal Fragment Of Get5
pdb|3LKU|E Chain E, Crystal Structure Of S. Cerevisiae Get4 In Complex With An
N-Terminal Fragment Of Get5
Length = 292
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 13/132 (9%)
Query: 134 FYELEPLFADHCNRVVKPKSWCVGPLCLAELSPKNEEPKNELSKPAWIRWL-------DR 186
+YE NR V+ KS+ +++ + + K S I +L +
Sbjct: 21 YYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEV 80
Query: 187 KLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGR 246
K+D+ S V ++ + S LK++ TG W I+ +E + GD + G
Sbjct: 81 KVDDISVARLVRLIAELDPSEPNLKDVITGXNN------WSIKFSEYKFGDPYLHNTIGS 134
Query: 247 GLVVRDWVNQKE 258
L+ D+V + E
Sbjct: 135 KLLEGDFVYEAE 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,238,114
Number of Sequences: 62578
Number of extensions: 506120
Number of successful extensions: 1224
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1199
Number of HSP's gapped (non-prelim): 15
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)