Query 048238
Match_columns 395
No_of_seqs 159 out of 1714
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 13:09:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hbf_A Flavonoid 3-O-glucosylt 100.0 1.2E-57 4.2E-62 450.5 32.8 356 4-379 92-453 (454)
2 2vch_A Hydroquinone glucosyltr 100.0 8.9E-53 3E-57 421.2 38.4 365 5-385 84-474 (480)
3 2pq6_A UDP-glucuronosyl/UDP-gl 100.0 7.1E-52 2.4E-56 415.5 34.7 361 5-379 89-478 (482)
4 2c1x_A UDP-glucose flavonoid 3 100.0 9.8E-52 3.4E-56 411.1 35.1 346 15-379 99-451 (456)
5 2acv_A Triterpene UDP-glucosyl 100.0 2.5E-50 8.4E-55 401.9 32.3 355 7-379 92-462 (463)
6 2iya_A OLEI, oleandomycin glyc 100.0 2.6E-33 9E-38 276.1 22.8 319 8-378 91-420 (424)
7 1iir_A Glycosyltransferase GTF 100.0 1.7E-31 5.7E-36 262.6 20.5 207 128-380 193-400 (415)
8 4amg_A Snogd; transferase, pol 100.0 2.9E-31 9.9E-36 258.9 19.9 156 180-358 227-384 (400)
9 1rrv_A Glycosyltransferase GTF 100.0 5.6E-30 1.9E-34 251.7 26.6 208 128-380 193-401 (416)
10 3h4t_A Glycosyltransferase GTF 100.0 7.8E-29 2.7E-33 242.8 27.8 177 148-357 190-366 (404)
11 3rsc_A CALG2; TDP, enediyne, s 100.0 2.1E-28 7.1E-33 240.1 27.6 300 9-378 101-412 (415)
12 2p6p_A Glycosyl transferase; X 100.0 5.6E-28 1.9E-32 234.7 24.5 278 13-378 94-378 (384)
13 3ia7_A CALG4; glycosysltransfe 100.0 1.1E-27 3.9E-32 233.3 26.8 308 11-379 87-398 (402)
14 2iyf_A OLED, oleandomycin glyc 100.0 2.3E-28 8E-33 240.9 20.3 300 11-377 89-397 (430)
15 2yjn_A ERYCIII, glycosyltransf 100.0 1.3E-27 4.4E-32 236.7 22.9 176 180-379 257-435 (441)
16 2o6l_A UDP-glucuronosyltransfe 99.9 3.7E-26 1.3E-30 196.7 17.6 164 174-357 5-169 (170)
17 4fzr_A SSFS6; structural genom 99.9 3.4E-25 1.2E-29 216.1 19.5 159 180-357 217-383 (398)
18 3oti_A CALG3; calicheamicin, T 99.9 2.1E-24 7.1E-29 210.7 19.8 153 182-357 224-380 (398)
19 3tsa_A SPNG, NDP-rhamnosyltran 99.9 1.6E-23 5.4E-28 203.7 22.2 158 182-357 210-371 (391)
20 3otg_A CALG1; calicheamicin, T 99.9 3.8E-22 1.3E-26 195.0 26.0 152 190-357 240-391 (412)
21 3s2u_A UDP-N-acetylglucosamine 99.8 6.3E-19 2.1E-23 170.1 17.4 138 190-341 178-326 (365)
22 2jzc_A UDP-N-acetylglucosamine 99.6 4.1E-15 1.4E-19 132.2 10.2 132 190-336 26-196 (224)
23 1f0k_A MURG, UDP-N-acetylgluco 99.5 6.2E-13 2.1E-17 127.2 20.8 134 191-340 182-324 (364)
24 3hbm_A UDP-sugar hydrolase; PS 99.4 1.5E-11 5.1E-16 113.5 15.9 116 192-315 157-274 (282)
25 3ot5_A UDP-N-acetylglucosamine 99.0 7.1E-09 2.4E-13 100.9 15.4 131 191-340 223-362 (403)
26 3dzc_A UDP-N-acetylglucosamine 99.0 4.2E-09 1.4E-13 102.3 13.5 131 191-340 229-368 (396)
27 4hwg_A UDP-N-acetylglucosamine 99.0 1.9E-08 6.5E-13 97.1 17.6 290 8-387 76-383 (385)
28 1v4v_A UDP-N-acetylglucosamine 99.0 2.4E-08 8.2E-13 95.6 17.6 129 192-340 198-335 (376)
29 1vgv_A UDP-N-acetylglucosamine 98.9 6E-08 2E-12 93.0 16.5 130 192-340 205-343 (384)
30 3okp_A GDP-mannose-dependent a 98.8 1.9E-06 6.5E-11 82.4 26.4 250 14-341 74-346 (394)
31 3c48_A Predicted glycosyltrans 98.6 1.1E-05 3.8E-10 78.5 25.5 148 192-355 242-408 (438)
32 3beo_A UDP-N-acetylglucosamine 98.6 7.6E-07 2.6E-11 84.8 15.6 130 192-340 205-343 (375)
33 2jjm_A Glycosyl transferase, g 98.6 2.2E-05 7.5E-10 75.3 24.4 132 192-341 210-352 (394)
34 2gek_A Phosphatidylinositol ma 98.5 6.3E-05 2.1E-09 72.1 25.0 129 194-341 209-351 (406)
35 2f9f_A First mannosyl transfer 98.4 3.2E-06 1.1E-10 72.0 12.8 131 193-341 23-164 (177)
36 2r60_A Glycosyl transferase, g 98.3 0.00022 7.6E-09 70.6 25.8 92 245-351 334-437 (499)
37 3fro_A GLGA glycogen synthase; 98.3 0.00015 5E-09 70.1 23.8 143 194-353 252-411 (439)
38 2iuy_A Avigt4, glycosyltransfe 98.3 1.8E-05 6.2E-10 74.3 15.6 122 195-338 164-307 (342)
39 2x6q_A Trehalose-synthase TRET 98.2 0.00019 6.4E-09 69.2 20.5 133 192-341 230-381 (416)
40 3oy2_A Glycosyltransferase B73 98.1 0.00047 1.6E-08 66.3 22.6 134 192-341 183-357 (413)
41 2xci_A KDO-transferase, 3-deox 98.1 0.00043 1.5E-08 66.2 22.0 96 247-356 261-363 (374)
42 2iw1_A Lipopolysaccharide core 97.9 5.5E-05 1.9E-09 71.6 11.1 144 191-354 194-353 (374)
43 3qhp_A Type 1 capsular polysac 97.8 0.0001 3.6E-09 61.3 10.5 140 193-354 2-156 (166)
44 2bfw_A GLGA glycogen synthase; 97.7 0.00052 1.8E-08 58.8 13.5 140 195-351 38-194 (200)
45 2vsy_A XCC0866; transferase, g 97.6 0.002 6.7E-08 64.8 16.8 84 246-341 434-524 (568)
46 3q3e_A HMW1C-like glycosyltran 97.5 0.0014 4.9E-08 66.0 14.4 138 192-341 440-590 (631)
47 3s28_A Sucrose synthase 1; gly 97.5 0.0064 2.2E-07 63.8 19.3 82 245-341 639-736 (816)
48 4gyw_A UDP-N-acetylglucosamine 97.4 0.0018 6.1E-08 67.4 15.0 138 191-341 521-670 (723)
49 3rhz_A GTF3, nucleotide sugar 96.9 0.0022 7.5E-08 60.4 8.3 95 247-357 215-321 (339)
50 2qzs_A Glycogen synthase; glyc 96.6 0.055 1.9E-06 52.9 16.0 133 192-340 291-445 (485)
51 1rzu_A Glycogen synthase 1; gl 96.6 0.056 1.9E-06 52.8 15.9 132 193-340 291-444 (485)
52 2hy7_A Glucuronosyltransferase 95.3 0.08 2.7E-06 50.8 10.2 116 194-340 223-353 (406)
53 2x0d_A WSAF; GT4 family, trans 95.2 0.052 1.8E-06 52.3 8.6 80 246-341 295-381 (413)
54 3vue_A GBSS-I, granule-bound s 93.8 2.2 7.4E-05 42.4 16.8 138 193-338 327-476 (536)
55 3tov_A Glycosyl transferase fa 93.2 0.24 8.3E-06 46.4 8.2 97 191-290 184-286 (349)
56 1psw_A ADP-heptose LPS heptosy 90.7 0.73 2.5E-05 42.6 8.3 97 191-290 179-286 (348)
57 2iz6_A Molybdenum cofactor car 87.1 6.7 0.00023 32.6 10.9 102 177-293 34-140 (176)
58 3dfz_A SIRC, precorrin-2 dehyd 85.1 1.4 4.7E-05 38.5 5.8 148 191-359 31-186 (223)
59 2gt1_A Lipopolysaccharide hept 84.7 0.72 2.5E-05 42.4 4.1 139 191-340 177-323 (326)
60 1uqt_A Alpha, alpha-trehalose- 83.7 6.2 0.00021 38.5 10.6 109 248-381 333-454 (482)
61 3nb0_A Glycogen [starch] synth 80.8 5.4 0.00019 40.7 8.9 34 257-292 513-550 (725)
62 4b4k_A N5-carboxyaminoimidazol 79.9 22 0.00075 29.4 10.7 147 191-363 21-177 (181)
63 3t5t_A Putative glycosyltransf 79.1 50 0.0017 32.2 18.0 111 247-381 353-473 (496)
64 1kyq_A Met8P, siroheme biosynt 76.2 41 0.0014 30.0 12.5 152 191-359 13-210 (274)
65 2lpm_A Two-component response 67.7 3.9 0.00013 31.8 3.2 38 17-55 44-86 (123)
66 1xmp_A PURE, phosphoribosylami 65.5 55 0.0019 26.8 12.4 146 191-363 10-166 (170)
67 3to5_A CHEY homolog; alpha(5)b 64.0 6.9 0.00024 30.8 4.1 40 19-59 50-98 (134)
68 4grd_A N5-CAIR mutase, phospho 62.7 51 0.0017 27.1 9.0 144 191-361 11-165 (173)
69 3gl9_A Response regulator; bet 61.6 11 0.00038 28.2 4.9 42 17-59 37-87 (122)
70 1pjq_A CYSG, siroheme synthase 59.2 25 0.00086 33.9 7.9 150 191-359 12-168 (457)
71 1rcu_A Conserved hypothetical 57.8 69 0.0023 26.9 9.5 99 176-292 46-150 (195)
72 3lp6_A Phosphoribosylaminoimid 54.5 55 0.0019 26.9 7.9 145 191-360 6-157 (174)
73 3t6k_A Response regulator rece 54.2 17 0.0006 27.7 4.9 42 17-59 39-89 (136)
74 3f6p_A Transcriptional regulat 53.9 20 0.00069 26.6 5.1 43 16-59 36-84 (120)
75 1ydh_A AT5G11950; structural g 52.6 69 0.0024 27.4 8.8 44 248-292 89-143 (216)
76 3lyh_A Cobalamin (vitamin B12) 52.0 46 0.0016 25.4 7.0 34 191-224 5-38 (126)
77 3m6m_D Sensory/regulatory prot 49.7 17 0.00057 28.2 4.1 40 17-57 49-99 (143)
78 1o4v_A Phosphoribosylaminoimid 49.4 1.1E+02 0.0038 25.3 11.2 147 191-363 12-166 (183)
79 3trh_A Phosphoribosylaminoimid 49.1 1.1E+02 0.0037 25.0 11.6 142 192-360 6-158 (169)
80 2a33_A Hypothetical protein; s 48.2 59 0.002 27.7 7.7 102 178-292 35-147 (215)
81 2xws_A Sirohydrochlorin cobalt 46.8 52 0.0018 25.2 6.6 36 192-227 4-41 (133)
82 2wqk_A 5'-nucleotidase SURE; S 45.2 14 0.00048 32.6 3.2 38 18-56 77-127 (251)
83 3l4e_A Uncharacterized peptida 44.5 33 0.0011 29.1 5.4 47 179-227 17-63 (206)
84 1t35_A Hypothetical protein YV 44.5 85 0.0029 26.1 8.0 103 177-292 22-135 (191)
85 3c3m_A Response regulator rece 43.5 30 0.001 26.2 4.8 40 17-57 38-86 (138)
86 3qjg_A Epidermin biosynthesis 43.4 1.4E+02 0.0046 24.5 9.2 113 192-311 6-143 (175)
87 1dbw_A Transcriptional regulat 42.5 34 0.0012 25.3 4.9 42 17-59 38-86 (126)
88 3gt7_A Sensor protein; structu 42.4 33 0.0011 26.7 4.9 42 16-58 41-91 (154)
89 3s2u_A UDP-N-acetylglucosamine 42.4 40 0.0014 31.0 6.2 27 262-290 92-121 (365)
90 3ia7_A CALG4; glycosysltransfe 41.9 48 0.0016 30.4 6.7 36 193-230 6-41 (402)
91 3lqk_A Dipicolinate synthase s 41.7 1.5E+02 0.005 24.9 9.0 144 192-340 8-187 (201)
92 1yt5_A Inorganic polyphosphate 41.4 20 0.00067 31.6 3.6 54 262-340 41-97 (258)
93 3eod_A Protein HNR; response r 40.7 38 0.0013 25.1 4.9 43 16-59 41-90 (130)
94 3h4t_A Glycosyltransferase GTF 40.6 66 0.0023 29.9 7.5 36 193-230 2-37 (404)
95 3a10_A Response regulator; pho 39.6 49 0.0017 23.8 5.3 41 16-57 35-82 (116)
96 3pdi_B Nitrogenase MOFE cofact 39.4 24 0.00081 34.1 4.2 34 17-54 366-399 (458)
97 1tmy_A CHEY protein, TMY; chem 39.0 37 0.0013 24.7 4.5 42 17-59 38-86 (120)
98 1u0t_A Inorganic polyphosphate 39.0 43 0.0015 30.2 5.7 32 259-292 72-107 (307)
99 3nhm_A Response regulator; pro 38.8 46 0.0016 24.7 5.1 41 16-57 37-86 (133)
100 2qxy_A Response regulator; reg 38.7 41 0.0014 25.4 4.9 41 16-58 38-85 (142)
101 2rjn_A Response regulator rece 37.9 40 0.0014 26.1 4.7 43 16-59 41-90 (154)
102 3grc_A Sensor protein, kinase; 37.8 40 0.0014 25.4 4.7 42 16-58 40-90 (140)
103 1zgz_A Torcad operon transcrip 37.7 39 0.0013 24.7 4.4 42 16-58 36-83 (122)
104 3tsa_A SPNG, NDP-rhamnosyltran 37.6 30 0.001 31.8 4.5 29 262-292 114-143 (391)
105 2qzj_A Two-component response 37.6 41 0.0014 25.5 4.6 42 16-58 38-85 (136)
106 3b2n_A Uncharacterized protein 36.9 33 0.0011 25.8 4.0 42 17-59 40-88 (133)
107 4e7p_A Response regulator; DNA 36.7 43 0.0015 25.8 4.7 43 16-59 56-105 (150)
108 3rqi_A Response regulator prot 36.4 32 0.0011 27.9 4.0 42 17-59 42-90 (184)
109 3kb6_A D-lactate dehydrogenase 35.9 46 0.0016 30.6 5.3 102 192-335 142-246 (334)
110 3kht_A Response regulator; PSI 35.8 60 0.0021 24.5 5.5 42 16-58 41-91 (144)
111 1u11_A PURE (N5-carboxyaminoim 35.7 1.9E+02 0.0064 23.9 11.4 144 192-363 21-176 (182)
112 2i2c_A Probable inorganic poly 35.6 28 0.00095 30.9 3.7 54 262-340 35-94 (272)
113 2w36_A Endonuclease V; hypoxan 35.2 49 0.0017 28.5 5.0 42 15-56 90-139 (225)
114 2qr3_A Two-component system re 34.9 51 0.0017 24.7 4.8 43 16-59 37-91 (140)
115 2a9o_A Response regulator; ess 34.9 46 0.0016 24.1 4.4 41 18-59 37-83 (120)
116 3rg8_A Phosphoribosylaminoimid 34.9 1.8E+02 0.0061 23.5 11.1 138 193-358 3-148 (159)
117 3hv2_A Response regulator/HD d 34.7 39 0.0013 26.1 4.2 42 16-58 48-96 (153)
118 3l7i_A Teichoic acid biosynthe 34.7 37 0.0013 34.8 5.0 114 250-377 603-717 (729)
119 1xhf_A DYE resistance, aerobic 34.7 52 0.0018 24.0 4.7 42 17-59 38-85 (123)
120 3crn_A Response regulator rece 34.5 50 0.0017 24.6 4.7 41 17-58 38-85 (132)
121 2pl1_A Transcriptional regulat 34.4 60 0.0021 23.5 5.1 42 17-59 35-83 (121)
122 3cu5_A Two component transcrip 34.2 45 0.0015 25.4 4.4 39 17-56 40-85 (141)
123 4hn9_A Iron complex transport 33.7 44 0.0015 30.3 4.9 38 20-58 110-147 (335)
124 1srr_A SPO0F, sporulation resp 33.6 39 0.0013 24.9 3.8 41 17-58 38-85 (124)
125 3cg0_A Response regulator rece 33.4 42 0.0014 25.2 4.1 43 16-59 44-93 (140)
126 4fzr_A SSFS6; structural genom 33.4 43 0.0015 30.9 4.8 36 193-230 17-52 (398)
127 1mb3_A Cell division response 33.2 41 0.0014 24.6 3.9 39 18-57 37-84 (124)
128 1tjn_A Sirohydrochlorin cobalt 33.1 1.8E+02 0.0062 23.0 8.1 36 192-227 25-62 (156)
129 3qua_A Putative uncharacterize 33.0 79 0.0027 26.6 5.9 43 248-291 101-154 (199)
130 3i42_A Response regulator rece 32.6 47 0.0016 24.5 4.2 41 16-57 37-86 (127)
131 1p6q_A CHEY2; chemotaxis, sign 32.5 47 0.0016 24.5 4.2 41 16-57 41-90 (129)
132 3sbx_A Putative uncharacterize 32.5 93 0.0032 25.9 6.2 42 249-291 93-145 (189)
133 2q8p_A Iron-regulated surface 32.1 49 0.0017 28.6 4.8 39 17-57 52-91 (260)
134 2h31_A Multifunctional protein 32.0 3.3E+02 0.011 25.7 11.7 136 191-357 264-410 (425)
135 2r25_B Osmosensing histidine p 31.5 70 0.0024 23.9 5.1 33 27-59 52-92 (133)
136 3lte_A Response regulator; str 31.2 69 0.0024 23.6 5.0 41 16-57 40-88 (132)
137 1jbe_A Chemotaxis protein CHEY 31.2 67 0.0023 23.6 4.9 41 17-58 40-89 (128)
138 3cfy_A Putative LUXO repressor 31.0 49 0.0017 25.0 4.1 41 17-58 39-86 (137)
139 3cz5_A Two-component response 30.9 74 0.0025 24.4 5.3 42 16-58 41-89 (153)
140 3jte_A Response regulator rece 30.7 61 0.0021 24.4 4.7 43 16-59 37-88 (143)
141 2etv_A Iron(III) ABC transport 30.7 33 0.0011 31.4 3.5 37 17-55 88-125 (346)
142 3pdi_A Nitrogenase MOFE cofact 30.6 34 0.0012 33.2 3.7 36 15-54 390-425 (483)
143 2yq5_A D-isomer specific 2-hyd 30.3 1.1E+02 0.0038 28.1 7.0 63 191-274 148-210 (343)
144 1qkk_A DCTD, C4-dicarboxylate 30.0 1.4E+02 0.0047 22.8 6.8 48 283-339 74-121 (155)
145 3c97_A Signal transduction his 30.0 77 0.0026 23.8 5.2 29 17-46 45-75 (140)
146 3u7q_A Nitrogenase molybdenum- 30.0 34 0.0012 33.3 3.5 35 15-53 406-440 (492)
147 1wek_A Hypothetical protein TT 29.8 98 0.0033 26.4 6.1 100 177-291 58-169 (217)
148 1yio_A Response regulatory pro 29.7 45 0.0015 27.4 3.9 37 20-57 42-85 (208)
149 3q9s_A DNA-binding response re 29.5 67 0.0023 27.5 5.1 41 17-58 72-118 (249)
150 2xvy_A Chelatase, putative; me 29.5 1.1E+02 0.0037 26.7 6.6 40 191-230 9-50 (269)
151 3kuu_A Phosphoribosylaminoimid 29.3 2.4E+02 0.0081 23.1 11.1 148 192-363 12-167 (174)
152 1kgs_A DRRD, DNA binding respo 29.1 63 0.0022 26.8 4.8 42 17-59 37-85 (225)
153 3md9_A Hemin-binding periplasm 29.0 48 0.0016 28.6 4.1 35 20-55 53-89 (255)
154 3n53_A Response regulator rece 28.9 42 0.0014 25.3 3.4 41 16-57 36-85 (140)
155 3rsc_A CALG2; TDP, enediyne, s 28.8 65 0.0022 29.8 5.3 37 192-230 21-57 (415)
156 1i3c_A Response regulator RCP1 28.5 82 0.0028 24.0 5.1 32 27-58 61-101 (149)
157 3goc_A Endonuclease V; alpha-b 28.5 74 0.0025 27.6 5.0 41 15-55 94-142 (237)
158 2j48_A Two-component sensor ki 28.5 70 0.0024 22.7 4.5 41 16-57 35-84 (119)
159 3eul_A Possible nitrate/nitrit 28.4 49 0.0017 25.4 3.7 42 16-58 51-99 (152)
160 1k68_A Phytochrome response re 28.4 81 0.0028 23.3 5.0 42 16-58 38-95 (140)
161 3ors_A N5-carboxyaminoimidazol 28.3 2.4E+02 0.0081 22.8 12.0 146 192-360 3-155 (163)
162 3afo_A NADH kinase POS5; alpha 27.9 43 0.0015 31.5 3.7 35 256-292 108-147 (388)
163 1mio_B Nitrogenase molybdenum 27.4 54 0.0018 31.5 4.4 36 15-54 374-409 (458)
164 1ys7_A Transcriptional regulat 27.4 70 0.0024 26.7 4.8 40 17-57 42-88 (233)
165 2pju_A Propionate catabolism o 27.0 89 0.003 26.8 5.3 76 257-340 56-154 (225)
166 2qsj_A DNA-binding response re 26.9 56 0.0019 25.1 3.8 41 16-57 39-87 (154)
167 2q5c_A NTRC family transcripti 26.6 89 0.0031 26.0 5.2 36 21-60 137-172 (196)
168 1qkk_A DCTD, C4-dicarboxylate 26.6 54 0.0019 25.3 3.7 39 20-59 41-86 (155)
169 3h5i_A Response regulator/sens 26.4 91 0.0031 23.4 5.0 39 17-56 40-86 (140)
170 3ip3_A Oxidoreductase, putativ 26.2 97 0.0033 28.0 5.8 94 194-295 5-103 (337)
171 3psh_A Protein HI_1472; substr 26.2 52 0.0018 29.6 3.9 38 17-56 76-114 (326)
172 1zh2_A KDP operon transcriptio 25.8 66 0.0023 23.2 3.9 38 21-59 40-83 (121)
173 2lnd_A De novo designed protei 25.7 1E+02 0.0034 21.7 4.3 47 283-337 50-99 (112)
174 2q5c_A NTRC family transcripti 25.6 56 0.0019 27.3 3.7 29 265-294 52-80 (196)
175 2qv0_A Protein MRKE; structura 25.4 92 0.0032 23.3 4.8 30 17-47 46-77 (143)
176 2b4a_A BH3024; flavodoxin-like 25.2 59 0.002 24.4 3.6 38 17-55 50-95 (138)
177 3cnb_A DNA-binding response re 25.1 83 0.0028 23.5 4.5 42 16-58 44-94 (143)
178 3otg_A CALG1; calicheamicin, T 25.1 1.3E+02 0.0045 27.5 6.7 36 193-230 22-57 (412)
179 3r0j_A Possible two component 25.1 66 0.0023 27.4 4.3 42 17-59 58-106 (250)
180 2xdq_B Light-independent proto 24.9 46 0.0016 32.5 3.5 36 15-54 361-396 (511)
181 2r7a_A Bacterial heme binding 24.9 63 0.0022 27.8 4.1 36 18-55 52-89 (256)
182 2phj_A 5'-nucleotidase SURE; S 24.8 49 0.0017 29.0 3.2 38 19-57 78-128 (251)
183 1a04_A Nitrate/nitrite respons 24.7 61 0.0021 26.7 3.8 41 17-58 42-89 (215)
184 2duw_A Putative COA-binding pr 24.7 2.5E+02 0.0084 21.8 8.2 114 178-312 4-121 (145)
185 1eiw_A Hypothetical protein MT 24.6 93 0.0032 23.4 4.4 64 261-338 37-109 (111)
186 3hdg_A Uncharacterized protein 24.6 46 0.0016 25.0 2.8 41 16-57 41-88 (137)
187 1k66_A Phytochrome response re 24.6 1.1E+02 0.0036 23.0 5.1 33 25-58 61-102 (149)
188 3aek_B Light-independent proto 24.5 47 0.0016 32.6 3.4 36 15-54 338-373 (525)
189 3u7q_B Nitrogenase molybdenum- 24.4 74 0.0025 31.2 4.8 36 15-54 427-469 (523)
190 2oqr_A Sensory transduction pr 24.1 72 0.0024 26.6 4.2 42 17-59 39-86 (230)
191 1fy2_A Aspartyl dipeptidase; s 24.1 1.4E+02 0.0049 25.4 6.2 46 177-226 21-66 (229)
192 1n2z_A Vitamin B12 transport p 24.0 88 0.003 26.6 4.9 38 18-57 50-89 (245)
193 2f62_A Nucleoside 2-deoxyribos 23.9 2.2E+02 0.0074 22.9 6.8 85 191-291 9-105 (161)
194 3cg4_A Response regulator rece 23.9 77 0.0026 23.7 4.1 40 16-56 41-89 (142)
195 2qvg_A Two component response 23.8 1E+02 0.0035 23.0 4.8 42 16-58 43-99 (143)
196 1o97_C Electron transferring f 23.5 68 0.0023 28.3 4.0 42 15-57 101-148 (264)
197 4gud_A Imidazole glycerol phos 23.4 1.6E+02 0.0056 24.3 6.4 30 192-227 3-32 (211)
198 4e5s_A MCCFLIKE protein (BA_56 23.0 1.4E+02 0.0047 27.3 6.1 73 205-292 62-136 (331)
199 3eq2_A Probable two-component 22.8 71 0.0024 29.6 4.2 41 17-58 40-87 (394)
200 3ahc_A Phosphoketolase, xylulo 22.7 5.7E+02 0.019 26.6 11.1 80 268-363 727-811 (845)
201 2gwr_A DNA-binding response re 22.7 62 0.0021 27.3 3.6 38 19-57 42-85 (238)
202 3pp8_A Glyoxylate/hydroxypyruv 22.3 3.4E+02 0.012 24.3 8.6 63 191-273 139-202 (315)
203 3sho_A Transcriptional regulat 22.1 1.2E+02 0.004 24.5 5.1 89 180-295 32-125 (187)
204 1v5e_A Pyruvate oxidase; oxido 22.1 2.4E+02 0.0083 27.8 8.2 27 265-291 69-101 (590)
205 2r79_A Periplasmic binding pro 22.0 82 0.0028 27.6 4.3 36 17-54 51-88 (283)
206 2jba_A Phosphate regulon trans 21.8 53 0.0018 24.1 2.6 32 27-58 46-86 (127)
207 3n0r_A Response regulator; sig 21.8 1.1E+02 0.0037 27.1 5.1 39 18-57 197-242 (286)
208 2pi1_A D-lactate dehydrogenase 21.7 2E+02 0.0067 26.2 6.9 64 191-274 141-204 (334)
209 1p3y_1 MRSD protein; flavoprot 21.7 2.2E+02 0.0076 23.6 6.7 140 192-339 9-186 (194)
210 3c3w_A Two component transcrip 21.6 54 0.0018 27.5 2.9 40 17-57 38-84 (225)
211 1iuk_A Hypothetical protein TT 21.4 2.8E+02 0.0097 21.3 7.2 115 177-312 3-121 (140)
212 3bq9_A Predicted rossmann fold 21.3 2.2E+02 0.0074 27.3 7.1 30 260-290 243-284 (460)
213 3k5p_A D-3-phosphoglycerate de 21.3 2.8E+02 0.0096 26.1 8.0 64 191-275 156-219 (416)
214 3ip0_A 2-amino-4-hydroxy-6-hyd 21.1 1.2E+02 0.0041 24.4 4.7 28 194-221 2-29 (158)
215 2an1_A Putative kinase; struct 20.8 59 0.002 28.9 3.1 33 258-292 59-95 (292)
216 3evt_A Phosphoglycerate dehydr 20.7 2.2E+02 0.0076 25.7 7.0 64 191-273 137-200 (324)
217 1efv_B Electron transfer flavo 20.6 85 0.0029 27.5 4.0 42 15-57 105-152 (255)
218 3db2_A Putative NADPH-dependen 20.3 4.3E+02 0.015 23.7 9.1 109 193-315 7-124 (354)
219 1s8n_A Putative antiterminator 20.1 1E+02 0.0034 25.1 4.3 42 17-59 49-96 (205)
220 4hy3_A Phosphoglycerate oxidor 20.1 2.6E+02 0.009 25.8 7.4 66 191-275 176-241 (365)
221 1dz3_A Stage 0 sporulation pro 20.1 93 0.0032 22.9 3.8 40 17-57 39-86 (130)
222 3pfn_A NAD kinase; structural 20.1 46 0.0016 31.0 2.2 30 259-290 105-138 (365)
223 2rdm_A Response regulator rece 20.0 1.6E+02 0.0053 21.5 5.1 39 19-57 42-88 (132)
No 1
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=100.00 E-value=1.2e-57 Score=450.49 Aligned_cols=356 Identities=26% Similarity=0.432 Sum_probs=295.9
Q ss_pred hhHHHHHH-HhcHHHHHHHHhcC-CCccEEEECCchhhHHHHHHHcCCCcEEEecchHHHHHHHHhhhhccCCC--CCCC
Q 048238 4 YVPFTRAT-KLMQPHFERALESL-PHVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYVMCVSSSVGANRSLS--GVQS 79 (395)
Q Consensus 4 ~~~~~~a~-~~~~~~l~~~l~~~-~kpD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~p~~--~~~~ 79 (395)
+..++.++ ..+.+.+++++++. +++||||+|.+++|+.++|+++|||++.|++++++.++.+.+........ ....
T Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~~~~~~~~~ 171 (454)
T 3hbf_A 92 IFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVH 171 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEETTCTTHHHHHHHTTCEEEEEECSCHHHHHHHHTHHHHHHTCCHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEECCcchHHHHHHHHhCCCEEEEeCccHHHHHHHHhhHHHHhhcCCCccc
Confidence 34455555 34555666655542 38999999999999999999999999999999999888776543321110 0001
Q ss_pred CCCc-cCCCCCCCCCcCcccCCCCCCCCCCCCchHHHHHHHHhhccCcceeeeccccccchhhHHHhhhhcCCcccccCC
Q 048238 80 DDEL-VTPPEFPWIKITKKDFDPPITDPEPKGPQFELFIDQIVSTSNSYGMIVNSFYELEPLFADHCNRVVKPKSWCVGP 158 (395)
Q Consensus 80 ~~~~-~~~p~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlins~~~le~~~~~~~~~~~~~~~~~vGp 158 (395)
...+ ..+||+|. ++.++++.++.. .......+.+.+..+...+++++++||+++||+++++.+++.+ +++++|||
T Consensus 172 ~~~~~~~iPg~p~--~~~~dlp~~~~~-~~~~~~~~~~~~~~~~~~~~~~vl~ns~~eLE~~~~~~~~~~~-~~v~~vGP 247 (454)
T 3hbf_A 172 DVKSIDVLPGFPE--LKASDLPEGVIK-DIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSKF-KLLLNVGP 247 (454)
T ss_dssp TSSCBCCSTTSCC--BCGGGSCTTSSS-CTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHTTS-SCEEECCC
T ss_pred cccccccCCCCCC--cChhhCchhhcc-CCchHHHHHHHHHHHhhccCCEEEECChhHhCHHHHHHHHhcC-CCEEEECC
Confidence 1123 35899987 888899988764 3345567777788888899999999999999999999888765 79999999
Q ss_pred CcccCCCCCCCCCCCCCCchHHHHHhhhccCCCCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCC-Cccch
Q 048238 159 LCLAELSPKNEEPKNELSKPAWIRWLDRKLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAE-SELGD 237 (395)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~-~~~~~ 237 (395)
++...... ....+.++.+||+.+ +++++|||+|||+...+.+++.+++.+|+..+++|||++++.. ..+|+
T Consensus 248 l~~~~~~~------~~~~~~~~~~wLd~~--~~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw~~~~~~~~~lp~ 319 (454)
T 3hbf_A 248 FNLTTPQR------KVSDEHGCLEWLDQH--ENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPKEKLPK 319 (454)
T ss_dssp HHHHSCCS------CCCCTTCHHHHHHTS--CTTCEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEEECCSCHHHHSCT
T ss_pred cccccccc------cccchHHHHHHHhcC--CCCceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhcCCH
Confidence 98754320 022357899999998 7899999999999988899999999999999999999998752 24777
Q ss_pred hHHHHhcCCCeEEecCCCHHHHhcccCccceeecCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccC
Q 048238 238 GFEERVKGRGLVVRDWVNQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCD 317 (395)
Q Consensus 238 ~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~ 317 (395)
+|.++.. .|+.+.+|+||.++|+|+++++|||||||||++|++++|||+|++|+++||+.||+++++.||+|+.+..
T Consensus 320 ~~~~~~~-~~~~vv~w~Pq~~vL~h~~v~~fvtH~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~-- 396 (454)
T 3hbf_A 320 GFLERTK-TKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDN-- 396 (454)
T ss_dssp THHHHTT-TTEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGG--
T ss_pred hHHhhcC-CceEEEeeCCHHHHHhhcCcCeEEecCCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecC--
Confidence 8877654 5777779999999999999999999999999999999999999999999999999999887899999985
Q ss_pred CCCcCccCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHHH
Q 048238 318 GSVRGFVKWQGLEKTVRELMGGEKGEKARTKVKELSEIARKAMEEEKGSSWRCLDMLLDETC 379 (395)
Q Consensus 318 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~~~~~~l~~~~~ 379 (395)
+.+++++|.++|+++|+++++++||+||+++++.++++++++ |||.+++++|++++.
T Consensus 397 ----~~~~~~~l~~av~~ll~~~~~~~~r~~a~~l~~~~~~a~~~g-GsS~~~l~~~v~~i~ 453 (454)
T 3hbf_A 397 ----GVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQN-GTSAMDFTTLIQIVT 453 (454)
T ss_dssp ----GSCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTSTT-SHHHHHHHHHHHHHT
T ss_pred ----CCCCHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhccC-CCHHHHHHHHHHHHh
Confidence 689999999999999998778899999999999999999999 999999999999874
No 2
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=100.00 E-value=8.9e-53 Score=421.21 Aligned_cols=365 Identities=32% Similarity=0.558 Sum_probs=285.0
Q ss_pred hHHHHHHHhcHHHHHHHHhcC---CCc-cEEEECCchhhHHHHHHHcCCCcEEEecchHHHHHHHHhhhhcc---CCCCC
Q 048238 5 VPFTRATKLMQPHFERALESL---PHV-SFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYVMCVSSSVGANR---SLSGV 77 (395)
Q Consensus 5 ~~~~~a~~~~~~~l~~~l~~~---~kp-D~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~---p~~~~ 77 (395)
..+..++..+.+.+++++++. .++ ||||+|.++.|+..+|+++|||++.+++++++....+.+.+... +....
T Consensus 84 ~~~~~~~~~~~~~l~~ll~~~~~~~~~pd~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (480)
T 2vch_A 84 SRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFR 163 (480)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHTTCCCSEEEECTTCGGGHHHHHHTTCCEEEEECSCHHHHHHHHHHHHHHHHCCSCGG
T ss_pred HHHHHHHHhhhHHHHHHHHHhccCCCCCeEEEECCcchhHHHHHHHcCCCEEEEECccHHHHHHHHHHHHHHhcCCCccc
Confidence 345566677888999998762 278 99999999999999999999999999999987766554332111 10000
Q ss_pred CCCCCccCCCCCCCCCcCcccCCCCCCCCCCCCchHHHHHHHHhhccCcceeeeccccccchhhHHHhhhhc--CCcccc
Q 048238 78 QSDDELVTPPEFPWIKITKKDFDPPITDPEPKGPQFELFIDQIVSTSNSYGMIVNSFYELEPLFADHCNRVV--KPKSWC 155 (395)
Q Consensus 78 ~~~~~~~~~p~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlins~~~le~~~~~~~~~~~--~~~~~~ 155 (395)
. ...+..+|+++. +...+++..+... .......+.+......+++++++||+++++++.+..+.+.. .+++++
T Consensus 164 ~-~~~~~~~Pg~~p--~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~nt~~ele~~~~~~l~~~~~~~~~v~~ 238 (480)
T 2vch_A 164 E-LTEPLMLPGCVP--VAGKDFLDPAQDR--KDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPPVYP 238 (480)
T ss_dssp G-CSSCBCCTTCCC--BCGGGSCGGGSCT--TSHHHHHHHHHHHHGGGCSEEEESCCTTTSHHHHHHHHSCCTTCCCEEE
T ss_pred c-cCCcccCCCCCC--CChHHCchhhhcC--CchHHHHHHHHHHhcccCCEEEEcCHHHHhHHHHHHHHhcccCCCcEEE
Confidence 0 011345667765 5555555444321 12244444555566677889999999999998877665321 268999
Q ss_pred cCCCcccCCCCCCCCCCCCCCchHHHHHhhhccCCCCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCC---
Q 048238 156 VGPLCLAELSPKNEEPKNELSKPAWIRWLDRKLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAE--- 232 (395)
Q Consensus 156 vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~--- 232 (395)
|||++...... . ....+.++.+|||++ +++++|||||||+...+.+.+.+++.+|+..+++|||+++...
T Consensus 239 vGpl~~~~~~~---~--~~~~~~~~~~wLd~~--~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~ 311 (480)
T 2vch_A 239 VGPLVNIGKQE---A--KQTEESECLKWLDNQ--PLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIA 311 (480)
T ss_dssp CCCCCCCSCSC---C-------CHHHHHHHTS--CTTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSST
T ss_pred Eeccccccccc---c--CccchhHHHHHhcCC--CCCceEEEecccccCCCHHHHHHHHHHHHhcCCcEEEEECCccccc
Confidence 99998653210 0 012467899999998 7789999999999888889999999999999999999998642
Q ss_pred --------------CccchhHHHHhcCCCeEEecCCCHHHHhcccCccceeecCCchhHHHHHhcCCcEEeccCCCchhH
Q 048238 233 --------------SELGDGFEERVKGRGLVVRDWVNQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPL 298 (395)
Q Consensus 233 --------------~~~~~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~DQ~~ 298 (395)
..+|++|.++.++.++++.+|+||.++|+|+++++|||||||||++|++++|||||++|+++||+.
T Consensus 312 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~Pq~~vL~h~~v~~fvtHgG~~S~~Eal~~GvP~i~~P~~~DQ~~ 391 (480)
T 2vch_A 312 NSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKM 391 (480)
T ss_dssp TTTTTCC--CSCGGGGSCTTHHHHTTTTEEEEESCCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHH
T ss_pred cccccccccccchhhhcCHHHHHHhCCCeEEEeCccCHHHHhCCCCcCeEEecccchhHHHHHHcCCCEEeccccccchH
Confidence 137788988888888888789999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHH
Q 048238 299 NARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGEKGEKARTKVKELSEIARKAMEEEKGSSWRCLDMLLDET 378 (395)
Q Consensus 299 na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~~~~~~l~~~~ 378 (395)
||+++++.+|+|+.+.. .+++.+++++|+++|+++|+++++++||+||+++++.+++++.++ |++.+++++|++++
T Consensus 392 na~~l~~~~G~g~~l~~---~~~~~~~~~~l~~av~~vl~~~~~~~~r~~a~~l~~~~~~a~~~g-Gss~~~~~~~v~~~ 467 (480)
T 2vch_A 392 NAVLLSEDIRAALRPRA---GDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDD-GTSTKALSLVALKW 467 (480)
T ss_dssp HHHHHHHTTCCEECCCC---CTTSCCCHHHHHHHHHHHHTSTHHHHHHHHHHHHHHHHHHHTSTT-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCeEEEeec---ccCCccCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHH
Confidence 99998666699999975 112378999999999999986666799999999999999999999 99999999999999
Q ss_pred HHhhhhh
Q 048238 379 CKYEQQL 385 (395)
Q Consensus 379 ~~~~~~~ 385 (395)
....+.+
T Consensus 468 ~~~~~~~ 474 (480)
T 2vch_A 468 KAHKKEL 474 (480)
T ss_dssp HHHHHHH
T ss_pred HHhHHHh
Confidence 8744433
No 3
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=100.00 E-value=7.1e-52 Score=415.45 Aligned_cols=361 Identities=28% Similarity=0.521 Sum_probs=281.4
Q ss_pred hHHHHHH-HhcHHHHHHHHhcC------CCccEEEECCchhhHHHHHHHcCCCcEEEecchHHHHHHHHhhhh-----cc
Q 048238 5 VPFTRAT-KLMQPHFERALESL------PHVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYVMCVSSSVGA-----NR 72 (395)
Q Consensus 5 ~~~~~a~-~~~~~~l~~~l~~~------~kpD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~-----~~ 72 (395)
..++.++ +.+.+.+++++++. .+|||||+|.++.|+..+|+++|||++.+++++++....+...+. +.
T Consensus 89 ~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (482)
T 2pq6_A 89 PTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGII 168 (482)
T ss_dssp HHHHHHHTTSSHHHHHHHHHHHHTCSSSCCCCEEEEETTCTHHHHHHHHTTCCEEEEECSCHHHHHHHTTHHHHHHTTCS
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhccCCCceEEEECCcchhHHHHHHHcCCCEEEEecccHHHHHHHHHHHHHHhcCCC
Confidence 3455666 67788888888741 289999999999999999999999999999999877665443221 23
Q ss_pred CCCCCC--CC---CC-ccCCCCCCCCCcCcccCCCCCCCCCCCCchHHHHHHHHhhccCcceeeeccccccchhhHHHhh
Q 048238 73 SLSGVQ--SD---DE-LVTPPEFPWIKITKKDFDPPITDPEPKGPQFELFIDQIVSTSNSYGMIVNSFYELEPLFADHCN 146 (395)
Q Consensus 73 p~~~~~--~~---~~-~~~~p~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlins~~~le~~~~~~~~ 146 (395)
|..... .. .. ...+|+++. ++.++++.++..........+.+.+..+...+++++++||+++||+++++.++
T Consensus 169 p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~nt~~~le~~~~~~~~ 246 (482)
T 2pq6_A 169 PFKDESYLTNGCLETKVDWIPGLKN--FRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALS 246 (482)
T ss_dssp SCSSGGGGTSSGGGCBCCSSTTCCS--CBGGGSCGGGCCSCTTCHHHHHHHHHHHTCCTTCCEEESSCGGGGHHHHHHHH
T ss_pred CCccccccccccccCccccCCCCCC--CchHHCchhhccCCcccHHHHHHHHHHHhhccCCEEEEcChHHHhHHHHHHHH
Confidence 321000 00 00 113455544 44555555544332233345555566677788999999999999999999888
Q ss_pred hhcCCcccccCCCccc-CCCCC----CCC-CCCCCCchHHHHHhhhccCCCCCeeEEEecccccCCHHHHHHHHHHHHhC
Q 048238 147 RVVKPKSWCVGPLCLA-ELSPK----NEE-PKNELSKPAWIRWLDRKLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQS 220 (395)
Q Consensus 147 ~~~~~~~~~vGpl~~~-~~~~~----~~~-~~~~~~~~~l~~~l~~~~~~~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~ 220 (395)
+.+ +++++|||++.. +.... ... ...++.+.++.+|||++ +++++|||||||+...+.+.+.+++.+|+..
T Consensus 247 ~~~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wld~~--~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~ 323 (482)
T 2pq6_A 247 STI-PSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESK--EPGSVVYVNFGSTTVMTPEQLLEFAWGLANC 323 (482)
T ss_dssp TTC-TTEEECCCHHHHHHTSTTGGGGCC---------CHHHHHHTTS--CTTCEEEEECCSSSCCCHHHHHHHHHHHHHT
T ss_pred HhC-CcEEEEcCCcccccccccccccccccccccccchHHHHHHhcC--CCCceEEEecCCcccCCHHHHHHHHHHHHhc
Confidence 876 899999999864 21100 000 00112345799999998 7889999999999888888899999999999
Q ss_pred CCcEEEEEcCCC-----CccchhHHHHhcCCCeEEecCCCHHHHhcccCccceeecCCchhHHHHHhcCCcEEeccCCCc
Q 048238 221 KVNFLWVIRKAE-----SELGDGFEERVKGRGLVVRDWVNQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMAD 295 (395)
Q Consensus 221 ~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~D 295 (395)
+++|+|+++... ..+++++.++. +.|+.+.+|+||.++|+|+++++|||||||||++|++++|||+|++|+++|
T Consensus 324 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~-~~~~~v~~~~pq~~~L~h~~~~~~vth~G~~s~~Eal~~GvP~i~~P~~~d 402 (482)
T 2pq6_A 324 KKSFLWIIRPDLVIGGSVIFSSEFTNEI-ADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFAD 402 (482)
T ss_dssp TCEEEEECCGGGSTTTGGGSCHHHHHHH-TTTEEEESCCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTT
T ss_pred CCcEEEEEcCCccccccccCcHhHHHhc-CCCEEEEeecCHHHHhcCCCCCEEEecCCcchHHHHHHcCCCEEecCcccc
Confidence 999999998641 12677777665 468888899999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhCCCchHHHHHHHH
Q 048238 296 QPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGEKGEKARTKVKELSEIARKAMEEEKGSSWRCLDMLL 375 (395)
Q Consensus 296 Q~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~~~~~~l~ 375 (395)
|+.||+++++.+|+|+.+. ..+++++|.++|+++|+|+++++||+||+++++.+++++.++ ||+.+++++|+
T Consensus 403 Q~~na~~~~~~~G~g~~l~-------~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~g-Gss~~~l~~~v 474 (482)
T 2pq6_A 403 QPTDCRFICNEWEIGMEID-------TNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPG-GCSYMNLNKVI 474 (482)
T ss_dssp HHHHHHHHHHTSCCEEECC-------SSCCHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHTSTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCEEEEEC-------CCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHH
Confidence 9999999975559999997 368999999999999998877789999999999999999999 99999999999
Q ss_pred HHHH
Q 048238 376 DETC 379 (395)
Q Consensus 376 ~~~~ 379 (395)
+++.
T Consensus 475 ~~~~ 478 (482)
T 2pq6_A 475 KDVL 478 (482)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 9874
No 4
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=100.00 E-value=9.8e-52 Score=411.10 Aligned_cols=346 Identities=27% Similarity=0.484 Sum_probs=273.4
Q ss_pred HHHHHHHHhcC-CCccEEEECCchhhHHHHHHHcCCCcEEEecchHHHHHHHHhhhh---ccCCCCC-CCCCC-ccCCCC
Q 048238 15 QPHFERALESL-PHVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYVMCVSSSVGA---NRSLSGV-QSDDE-LVTPPE 88 (395)
Q Consensus 15 ~~~l~~~l~~~-~kpD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~---~~p~~~~-~~~~~-~~~~p~ 88 (395)
...+.+++++. .+|||||+|.++.|+..+|+++|||++.+++++++.+..+.+... ....... ..... ...+|+
T Consensus 99 ~~~l~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg 178 (456)
T 2c1x_A 99 RQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNFIPG 178 (456)
T ss_dssp HHHHHHHHHHHTCCCCEEEEETTSTTHHHHHHHHTCEEEEEECSCHHHHHHHHTHHHHHHHHCSSCCTTCTTCBCTTSTT
T ss_pred HHHHHHHHhccCCCceEEEECCchHhHHHHHHHhCCCEEEEeCccHHHHHHHhhhHHHHhccCCcccccccccccccCCC
Confidence 33444444331 389999999999999999999999999999998876655432211 1110000 01111 235677
Q ss_pred CCCCCcCcccCCCCCCCCCCCCchHHHHHHHHhhccCcceeeeccccccchhhHHHhhhhcCCcccccCCCcccCCCCCC
Q 048238 89 FPWIKITKKDFDPPITDPEPKGPQFELFIDQIVSTSNSYGMIVNSFYELEPLFADHCNRVVKPKSWCVGPLCLAELSPKN 168 (395)
Q Consensus 89 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlins~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~ 168 (395)
++. ++.++++..+............+.+......+++++++||+++||+++++.+++.+ +++++|||++......
T Consensus 179 ~~~--~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~~le~~~~~~~~~~~-~~~~~vGpl~~~~~~~-- 253 (456)
T 2c1x_A 179 MSK--VRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKL-KTYLNIGPFNLITPPP-- 253 (456)
T ss_dssp CTT--CBGGGSCTTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHHHS-SCEEECCCHHHHC-----
T ss_pred CCc--ccHHhCchhhcCCCcccHHHHHHHHHHHhhhhCCEEEECChHHHhHHHHHHHHhcC-CCEEEecCcccCcccc--
Confidence 765 66667766443222223344555566666778999999999999999888888765 7999999998754220
Q ss_pred CCCCCCCCchHHHHHhhhccCCCCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCC-CccchhHHHHhcCCC
Q 048238 169 EEPKNELSKPAWIRWLDRKLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAE-SELGDGFEERVKGRG 247 (395)
Q Consensus 169 ~~~~~~~~~~~l~~~l~~~~~~~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~ 247 (395)
. .+.+.++.+|++.+ +++++|||+|||....+.+.+.+++.+|+..+++|+|+++... ..++++|.++. +.|
T Consensus 254 --~--~~~~~~~~~wl~~~--~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~~~~l~~~~~~~~-~~~ 326 (456)
T 2c1x_A 254 --V--VPNTTGCLQWLKER--KPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLEKT-RGY 326 (456)
T ss_dssp ----------CHHHHHHTS--CTTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGGGGGSCTTHHHHH-TTT
T ss_pred --c--ccchhhHHHHHhcC--CCcceEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEECCcchhhCCHHHHhhc-CCc
Confidence 0 11245699999987 7889999999999888888999999999999999999998752 23677776654 467
Q ss_pred eEEecCCCHHHHhcccCccceeecCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHH
Q 048238 248 LVVRDWVNQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQ 327 (395)
Q Consensus 248 ~~~~~~~pq~~ll~~~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~ 327 (395)
+.+.+|+||.++|+|+++++|||||||||++|++++|||||++|++.||+.||+++++.||+|+.+.. +.++++
T Consensus 327 ~~v~~w~pq~~vL~h~~~~~fvth~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~~------~~~~~~ 400 (456)
T 2c1x_A 327 GMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEG------GVFTKS 400 (456)
T ss_dssp EEEESCCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGG------GSCCHH
T ss_pred eEEecCCCHHHHhcCCcCCEEEecCCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEecC------CCcCHH
Confidence 88889999999999999999999999999999999999999999999999999999998999999975 679999
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHHH
Q 048238 328 GLEKTVRELMGGEKGEKARTKVKELSEIARKAMEEEKGSSWRCLDMLLDETC 379 (395)
Q Consensus 328 ~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~~~~~~l~~~~~ 379 (395)
+|.++|+++|+|+++++||+||+++++.+++++.++ |||.+++++|++++.
T Consensus 401 ~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~g-GsS~~~l~~~v~~~~ 451 (456)
T 2c1x_A 401 GLMSCFDQILSQEKGKKLRENLRALRETADRAVGPK-GSSTENFITLVDLVS 451 (456)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHTSTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHhhhcC-CcHHHHHHHHHHHHH
Confidence 999999999988777899999999999999999999 999999999999884
No 5
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=100.00 E-value=2.5e-50 Score=401.92 Aligned_cols=355 Identities=29% Similarity=0.472 Sum_probs=277.0
Q ss_pred HHHHHHhcHHHHHHHHhc---CCCccEEEECCchhhHHHHHHHcCCCcEEEecchHHHHHHHHhhhhccCCCCCCCCCC-
Q 048238 7 FTRATKLMQPHFERALES---LPHVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYVMCVSSSVGANRSLSGVQSDDE- 82 (395)
Q Consensus 7 ~~~a~~~~~~~l~~~l~~---~~kpD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~- 82 (395)
++.++..+.+.++++|++ . +|||||+|.++.|+..+|+++|||++++++++++.+..+.+.+.............
T Consensus 92 ~~~~~~~~~~~~~~ll~~~~~~-~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (463)
T 2acv_A 92 ILTFLESLIPHVKATIKTILSN-KVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRD 170 (463)
T ss_dssp HHHHHHHTHHHHHHHHHHHCCT-TEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCHHHHHHHHHGGGSCTTCCCCCSSGG
T ss_pred HHHHHHhhhHHHHHHHHhccCC-CCeEEEECCcchhHHHHHHHcCCCEEEEeCchHHHHHHHHHHHhhcccCCCCCcccc
Confidence 556667888899999987 5 89999999999999999999999999999999887766654432210000000111
Q ss_pred --ccCCCCC-CCCCcCcccCCCCCCCCCCCCchHHHHHHHHhhccCcceeeeccccccchhhHHHhhhhc--CCcccccC
Q 048238 83 --LVTPPEF-PWIKITKKDFDPPITDPEPKGPQFELFIDQIVSTSNSYGMIVNSFYELEPLFADHCNRVV--KPKSWCVG 157 (395)
Q Consensus 83 --~~~~p~l-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlins~~~le~~~~~~~~~~~--~~~~~~vG 157 (395)
+..+|++ +. +..++++..+... . .....+.+......+++++++||+++||++..+.+++.. ++++++||
T Consensus 171 ~~~~~~pg~~~~--~~~~~l~~~~~~~--~-~~~~~~~~~~~~~~~~~~~l~nt~~ele~~~~~~l~~~~~p~~~v~~vG 245 (463)
T 2acv_A 171 HQLLNIPGISNQ--VPSNVLPDACFNK--D-GGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVG 245 (463)
T ss_dssp GCEECCTTCSSC--EEGGGSCHHHHCT--T-THHHHHHHHHHHHTTSSEEEESCCHHHHHHHHHHHHHHCTTSCCEEECC
T ss_pred CceeECCCCCCC--CChHHCchhhcCC--c-hHHHHHHHHHHhcccCCEEEECCHHHHhHHHHHHHHhccccCCcEEEeC
Confidence 3456777 54 4444444333221 1 244445555666778889999999999998877766544 57999999
Q ss_pred CCcccCC-CCCCCCCCCCCCchHHHHHhhhccCCCCCeeEEEecccc-cCCHHHHHHHHHHHHhCCCcEEEEEcCCCCcc
Q 048238 158 PLCLAEL-SPKNEEPKNELSKPAWIRWLDRKLDEGSSVMYVAFGSQA-EISAQQLKEIATGLEQSKVNFLWVIRKAESEL 235 (395)
Q Consensus 158 pl~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vv~vs~Gs~~-~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~ 235 (395)
|++.... .. ....+..+.++.+||+.+ +++++|||+|||+. ..+.+.+.+++.+|+..+++|||++++....+
T Consensus 246 pl~~~~~~~~---~~~~~~~~~~~~~wl~~~--~~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~l 320 (463)
T 2acv_A 246 PLLDLKGQPN---PKLDQAQHDLILKWLDEQ--PDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVF 320 (463)
T ss_dssp CCCCSSCCCB---TTBCHHHHHHHHHHHHTS--CTTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCCGGGS
T ss_pred CCcccccccc---cccccccchhHHHHHhcC--CCCceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEECCCcccC
Confidence 9986532 10 000012457899999998 78899999999998 78888899999999999999999998731236
Q ss_pred chhHHHHhc-CCCeEEecCCCHHHHhcccCccceeecCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEe-
Q 048238 236 GDGFEERVK-GRGLVVRDWVNQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRV- 313 (395)
Q Consensus 236 ~~~~~~~~~-~~~~~~~~~~pq~~ll~~~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~- 313 (395)
+++|.++.. +.++.+.+|+||.++|+|+++++|||||||||++|++++|||+|++|+++||+.||+++++.+|+|+.+
T Consensus 321 ~~~~~~~~~~~~~~~v~~w~pq~~vL~h~~~~~fvth~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~ 400 (463)
T 2acv_A 321 PEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLR 400 (463)
T ss_dssp CTTHHHHHHHHCSEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESC
T ss_pred ChhHHHhhccCCCEEEEccCCHHHHhCCCccCeEEecCCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEe
Confidence 777766541 357778899999999999999999999999999999999999999999999999999965555999999
Q ss_pred eccCCCCcC--ccCHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHHH
Q 048238 314 ETCDGSVRG--FVKWQGLEKTVRELMG-GEKGEKARTKVKELSEIARKAMEEEKGSSWRCLDMLLDETC 379 (395)
Q Consensus 314 ~~~~~~~~~--~~~~~~l~~~i~~~l~-~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~~~~~~l~~~~~ 379 (395)
+. .+.+ .++.++|.++|+++|+ ++ +||+||+++++.+++++.++ |+|.+++++|++++.
T Consensus 401 ~~---~~~~~~~~~~~~l~~ai~~ll~~~~---~~r~~a~~l~~~~~~a~~~g-Gss~~~l~~~v~~~~ 462 (463)
T 2acv_A 401 VD---YRKGSDVVAAEEIEKGLKDLMDKDS---IVHKKVQEMKEMSRNAVVDG-GSSLISVGKLIDDIT 462 (463)
T ss_dssp SS---CCTTCCCCCHHHHHHHHHHHTCTTC---THHHHHHHHHHHHHHHTSTT-SHHHHHHHHHHHHHH
T ss_pred cc---cCCCCccccHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHhc
Confidence 31 0014 6899999999999996 34 89999999999999999999 999999999999874
No 6
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=100.00 E-value=2.6e-33 Score=276.07 Aligned_cols=319 Identities=17% Similarity=0.167 Sum_probs=215.3
Q ss_pred HHHHHhcHHHHHHHHhcCCCccEEEECCchhhHHHHHHHcCCCcEEEecchHHHHHHHHhhhhccCCCCCCCCCCccCCC
Q 048238 8 TRATKLMQPHFERALESLPHVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYVMCVSSSVGANRSLSGVQSDDELVTPP 87 (395)
Q Consensus 8 ~~a~~~~~~~l~~~l~~~~kpD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p 87 (395)
...+..+.+.+.+++++. +||+||+|.++.|+..+|+++|||++.+++.+.........+....+.. ...+.+...|
T Consensus 91 ~~~~~~~~~~l~~~l~~~-~pD~VI~d~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 167 (424)
T 2iya_A 91 LDEAVRVLPQLEDAYADD-RPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFVAYEGFEEDVPAVQDPT--ADRGEEAAAP 167 (424)
T ss_dssp HHHHHHHHHHHHHHTTTS-CCSEEEEETTCTHHHHHHHHHTCCEEEEESSCCCCTTHHHHSGGGSCCC--C---------
T ss_pred HHHHHHHHHHHHHHHhcc-CCCEEEEcCcccHHHHHHHhcCCCEEEEecccccccccccccccccccc--cccccccccc
Confidence 344456677888888888 9999999998889999999999999999876541111100000000000 0000000000
Q ss_pred -CCCCCCcCcccCCCCCCCCCCCCchHHHHHHHHh----------hccCcceeeeccccccchhhHHHhhhhcCCccccc
Q 048238 88 -EFPWIKITKKDFDPPITDPEPKGPQFELFIDQIV----------STSNSYGMIVNSFYELEPLFADHCNRVVKPKSWCV 156 (395)
Q Consensus 88 -~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~vlins~~~le~~~~~~~~~~~~~~~~~v 156 (395)
+.. .. ..+.........+.+.+.+... .....+.+++++.++++++. ..+++++++|
T Consensus 168 ~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~l~~~~-----~~~~~~~~~v 235 (424)
T 2iya_A 168 AGTG---DA----EEGAEAEDGLVRFFTRLSAFLEEHGVDTPATEFLIAPNRCIVALPRTFQIKG-----DTVGDNYTFV 235 (424)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEESSCTTTSTTG-----GGCCTTEEEC
T ss_pred cccc---cc----hhhhccchhHHHHHHHHHHHHHHcCCCCCHHHhccCCCcEEEEcchhhCCCc-----cCCCCCEEEe
Confidence 000 00 0000000000000000111111 11146788999988887653 3467899999
Q ss_pred CCCcccCCCCCCCCCCCCCCchHHHHHhhhccCCCCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccc
Q 048238 157 GPLCLAELSPKNEEPKNELSKPAWIRWLDRKLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELG 236 (395)
Q Consensus 157 Gpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~ 236 (395)
||+..... ...+|++.. .++++|||++||......+.+.+++++++..+.+++|.++.... .
T Consensus 236 Gp~~~~~~--------------~~~~~~~~~--~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~--~ 297 (424)
T 2iya_A 236 GPTYGDRS--------------HQGTWEGPG--DGRPVLLIALGSAFTDHLDFYRTCLSAVDGLDWHVVLSVGRFVD--P 297 (424)
T ss_dssp CCCCCCCG--------------GGCCCCCCC--SSCCEEEEECCSSSCCCHHHHHHHHHHHTTCSSEEEEECCTTSC--G
T ss_pred CCCCCCcc--------------cCCCCCccC--CCCCEEEEEcCCCCcchHHHHHHHHHHHhcCCcEEEEEECCcCC--h
Confidence 99864211 123566654 56899999999998666788899999998888999999886311 1
Q ss_pred hhHHHHhcCCCeEEecCCCHHHHhcccCccceeecCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeecc
Q 048238 237 DGFEERVKGRGLVVRDWVNQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETC 316 (395)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~ 316 (395)
..+. ..+.|+.+.+|+||.++|+|+++ ||||||+||++|++++|+|+|++|...||+.||+++++. |+|+.+..
T Consensus 298 ~~~~--~~~~~v~~~~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~-g~g~~~~~- 371 (424)
T 2iya_A 298 ADLG--EVPPNVEVHQWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL-GLGRHIPR- 371 (424)
T ss_dssp GGGC--SCCTTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHT-TSEEECCG-
T ss_pred HHhc--cCCCCeEEecCCCHHHHHhhCCE--EEECCchhHHHHHHHcCCCEEEecCccchHHHHHHHHHC-CCEEEcCc-
Confidence 1110 12468999999999999999998 999999999999999999999999999999999999776 99999986
Q ss_pred CCCCcCccCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHH
Q 048238 317 DGSVRGFVKWQGLEKTVRELMGGEKGEKARTKVKELSEIARKAMEEEKGSSWRCLDMLLDET 378 (395)
Q Consensus 317 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~~~~~~l~~~~ 378 (395)
.+++.++|.++|+++++|+ +++++++++++.+++ . ++..+.++.+.+.+
T Consensus 372 -----~~~~~~~l~~~i~~ll~~~---~~~~~~~~~~~~~~~----~-~~~~~~~~~i~~~~ 420 (424)
T 2iya_A 372 -----DQVTAEKLREAVLAVASDP---GVAERLAAVRQEIRE----A-GGARAAADILEGIL 420 (424)
T ss_dssp -----GGCCHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHT----S-CHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHcCH---HHHHHHHHHHHHHHh----c-CcHHHHHHHHHHHH
Confidence 6789999999999999988 799999999999863 2 43554444444433
No 7
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.98 E-value=1.7e-31 Score=262.62 Aligned_cols=207 Identities=19% Similarity=0.220 Sum_probs=163.6
Q ss_pred eeeeccccccch-hhHHHhhhhcCCcccccCCCcccCCCCCCCCCCCCCCchHHHHHhhhccCCCCCeeEEEecccccCC
Q 048238 128 GMIVNSFYELEP-LFADHCNRVVKPKSWCVGPLCLAELSPKNEEPKNELSKPAWIRWLDRKLDEGSSVMYVAFGSQAEIS 206 (395)
Q Consensus 128 ~vlins~~~le~-~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vv~vs~Gs~~~~~ 206 (395)
.+++|+.+.+++ +. ..+ ++++|||+...+. ...+.++.+|++.+ +++|||++||.. ..
T Consensus 193 ~~l~~~~~~l~~~~~-----~~~--~~~~vG~~~~~~~---------~~~~~~~~~~l~~~----~~~v~v~~Gs~~-~~ 251 (415)
T 1iir_A 193 HPWVAADPVLAPLQP-----TDL--DAVQTGAWILPDE---------RPLSPELAAFLDAG----PPPVYLGFGSLG-AP 251 (415)
T ss_dssp SCEECSCTTTSCCCC-----CSS--CCEECCCCCCCCC---------CCCCHHHHHHHHTS----SCCEEEECC----CC
T ss_pred CEEEeeChhhcCCCc-----ccC--CeEeeCCCccCcc---------cCCCHHHHHHHhhC----CCeEEEeCCCCC-Cc
Confidence 578888888775 31 122 8999999986532 23578899999876 689999999997 56
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCHHHHhcccCccceeecCCchhHHHHHhcCCc
Q 048238 207 AQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQKEILWHESVQGFLSHCGWNSALESICAGVP 286 (395)
Q Consensus 207 ~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~IthgG~~s~~Ea~~~GvP 286 (395)
.+....++++++..+.+++|++|+..... . ..++|+.+.+|+||.++|+++++ ||||||+||++|++++|+|
T Consensus 252 ~~~~~~~~~al~~~~~~~v~~~g~~~~~~-~-----~~~~~v~~~~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P 323 (415)
T 1iir_A 252 ADAVRVAIDAIRAHGRRVILSRGWADLVL-P-----DDGADCFAIGEVNHQVLFGRVAA--VIHHGGAGTTHVAARAGAP 323 (415)
T ss_dssp HHHHHHHHHHHHHTTCCEEECTTCTTCCC-S-----SCGGGEEECSSCCHHHHGGGSSE--EEECCCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCCCcccc-c-----CCCCCEEEeCcCChHHHHhhCCE--EEeCCChhHHHHHHHcCCC
Confidence 78888899999999999999988642211 0 12358999999999999988888 9999999999999999999
Q ss_pred EEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhCCCc
Q 048238 287 ILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGEKGEKARTKVKELSEIARKAMEEEKGS 366 (395)
Q Consensus 287 ~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~~g~ 366 (395)
+|++|.+.||+.||+++++. |+|+.++. .+++.++|.++|+++ +|+ +++++++++++.++. . +
T Consensus 324 ~i~~p~~~dQ~~na~~l~~~-g~g~~~~~------~~~~~~~l~~~i~~l-~~~---~~~~~~~~~~~~~~~---~--~- 386 (415)
T 1iir_A 324 QILLPQMADQPYYAGRVAEL-GVGVAHDG------PIPTFDSLSAALATA-LTP---ETHARATAVAGTIRT---D--G- 386 (415)
T ss_dssp EEECCCSTTHHHHHHHHHHH-TSEEECSS------SSCCHHHHHHHHHHH-TSH---HHHHHHHHHHHHSCS---C--H-
T ss_pred EEECCCCCccHHHHHHHHHC-CCcccCCc------CCCCHHHHHHHHHHH-cCH---HHHHHHHHHHHHHhh---c--C-
Confidence 99999999999999999766 99999985 578999999999999 877 899999999988752 2 2
Q ss_pred hHHHHHHHHHHHHH
Q 048238 367 SWRCLDMLLDETCK 380 (395)
Q Consensus 367 ~~~~~~~l~~~~~~ 380 (395)
..+.+.++++++..
T Consensus 387 ~~~~~~~~i~~~~~ 400 (415)
T 1iir_A 387 AAVAARLLLDAVSR 400 (415)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHh
Confidence 33344555555544
No 8
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.97 E-value=2.9e-31 Score=258.91 Aligned_cols=156 Identities=19% Similarity=0.277 Sum_probs=127.9
Q ss_pred HHHHhhhccCCCCCeeEEEecccccCC--HHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCHH
Q 048238 180 WIRWLDRKLDEGSSVMYVAFGSQAEIS--AQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQK 257 (395)
Q Consensus 180 l~~~l~~~~~~~~~vv~vs~Gs~~~~~--~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~ 257 (395)
+.+|++.. +++++|||+|||+...+ .+.+.++++++...+..++|..++....... ..++|+.+.+|+||.
T Consensus 227 ~~~~l~~~--~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~-----~~~~~v~~~~~~p~~ 299 (400)
T 4amg_A 227 LPDWLPPA--AGRRRIAVTLGSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDLALLG-----ELPANVRVVEWIPLG 299 (400)
T ss_dssp CCTTCSCC--TTCCEEEECCCSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCCCCCC-----CCCTTEEEECCCCHH
T ss_pred Cccccccc--CCCcEEEEeCCcccccCccHHHHHHHHHHhhccCceEEEEecCccccccc-----cCCCCEEEEeecCHH
Confidence 34577777 78999999999986543 3667889999999999999998775222111 124699999999999
Q ss_pred HHhcccCccceeecCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHh
Q 048238 258 EILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELM 337 (395)
Q Consensus 258 ~ll~~~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l 337 (395)
++|+|+++ ||||||+||++|++++|||+|++|+++||+.||+++++. |+|+.++. .+.++ ++|+++|
T Consensus 300 ~lL~~~~~--~v~h~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~-G~g~~l~~------~~~~~----~al~~lL 366 (400)
T 4amg_A 300 ALLETCDA--IIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGL-GIGFDAEA------GSLGA----EQCRRLL 366 (400)
T ss_dssp HHHTTCSE--EEECCCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHH-TSEEECCT------TTCSH----HHHHHHH
T ss_pred HHhhhhhh--eeccCCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHC-CCEEEcCC------CCchH----HHHHHHH
Confidence 99999998 999999999999999999999999999999999999887 99999985 55555 4677788
Q ss_pred CCChhHHHHHHHHHHHHHHHH
Q 048238 338 GGEKGEKARTKVKELSEIARK 358 (395)
Q Consensus 338 ~~~~~~~~~~~a~~l~~~~~~ 358 (395)
+|+ +||++|+++++.+++
T Consensus 367 ~d~---~~r~~a~~l~~~~~~ 384 (400)
T 4amg_A 367 DDA---GLREAALRVRQEMSE 384 (400)
T ss_dssp HCH---HHHHHHHHHHHHHHT
T ss_pred cCH---HHHHHHHHHHHHHHc
Confidence 888 899999999999974
No 9
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.97 E-value=5.6e-30 Score=251.75 Aligned_cols=208 Identities=17% Similarity=0.177 Sum_probs=166.6
Q ss_pred eeeeccccccchhhHHHhhhhcCCcccccCCCcccCCCCCCCCCCCCCCchHHHHHhhhccCCCCCeeEEEeccccc-CC
Q 048238 128 GMIVNSFYELEPLFADHCNRVVKPKSWCVGPLCLAELSPKNEEPKNELSKPAWIRWLDRKLDEGSSVMYVAFGSQAE-IS 206 (395)
Q Consensus 128 ~vlins~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vv~vs~Gs~~~-~~ 206 (395)
.+++|+.++++++. .. .++++|||+...+. ...+.++.+|++.+ +++|||++||... ..
T Consensus 193 ~~l~~~~~~l~~~~-----~~--~~~~~vG~~~~~~~---------~~~~~~~~~~l~~~----~~~v~v~~Gs~~~~~~ 252 (416)
T 1rrv_A 193 RPLLAADPVLAPLQ-----PD--VDAVQTGAWLLSDE---------RPLPPELEAFLAAG----SPPVHIGFGSSSGRGI 252 (416)
T ss_dssp SCEECSCTTTSCCC-----SS--CCCEECCCCCCCCC---------CCCCHHHHHHHHSS----SCCEEECCTTCCSHHH
T ss_pred CeEEccCccccCCC-----CC--CCeeeECCCccCcc---------CCCCHHHHHHHhcC----CCeEEEecCCCCccCh
Confidence 68888888877542 12 28999999986532 23578899999875 6899999999964 34
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCHHHHhcccCccceeecCCchhHHHHHhcCCc
Q 048238 207 AQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQKEILWHESVQGFLSHCGWNSALESICAGVP 286 (395)
Q Consensus 207 ~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~IthgG~~s~~Ea~~~GvP 286 (395)
.+.+.+++++++..+.+|+|++|...... . ..++|+.+.+|+||.++|+++++ ||||||+||++|++++|+|
T Consensus 253 ~~~~~~~~~al~~~~~~~v~~~g~~~~~~-~-----~~~~~v~~~~~~~~~~ll~~~d~--~v~~~G~~t~~Ea~~~G~P 324 (416)
T 1rrv_A 253 ADAAKVAVEAIRAQGRRVILSRGWTELVL-P-----DDRDDCFAIDEVNFQALFRRVAA--VIHHGSAGTEHVATRAGVP 324 (416)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTTTCCC-S-----CCCTTEEEESSCCHHHHGGGSSE--EEECCCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCCccccc-c-----CCCCCEEEeccCChHHHhccCCE--EEecCChhHHHHHHHcCCC
Confidence 57788899999999999999998742211 1 12468999999999999988888 9999999999999999999
Q ss_pred EEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhCCCc
Q 048238 287 ILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGEKGEKARTKVKELSEIARKAMEEEKGS 366 (395)
Q Consensus 287 ~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~~g~ 366 (395)
+|++|++.||+.||+++++. |+|+.+.. .+++.++|.++|+++ .|+ +++++++++++.++ .. ++
T Consensus 325 ~i~~p~~~dQ~~na~~l~~~-g~g~~~~~------~~~~~~~l~~~i~~l-~~~---~~~~~~~~~~~~~~---~~--~~ 388 (416)
T 1rrv_A 325 QLVIPRNTDQPYFAGRVAAL-GIGVAHDG------PTPTFESLSAALTTV-LAP---ETRARAEAVAGMVL---TD--GA 388 (416)
T ss_dssp EEECCCSBTHHHHHHHHHHH-TSEEECSS------SCCCHHHHHHHHHHH-TSH---HHHHHHHHHTTTCC---CC--HH
T ss_pred EEEccCCCCcHHHHHHHHHC-CCccCCCC------CCCCHHHHHHHHHHh-hCH---HHHHHHHHHHHHHh---hc--Cc
Confidence 99999999999999999777 99999875 578999999999999 887 89999999988875 22 32
Q ss_pred hHHHHHHHHHHHHH
Q 048238 367 SWRCLDMLLDETCK 380 (395)
Q Consensus 367 ~~~~~~~l~~~~~~ 380 (395)
. +.++.+++++..
T Consensus 389 ~-~~~~~i~e~~~~ 401 (416)
T 1rrv_A 389 A-AAADLVLAAVGR 401 (416)
T ss_dssp H-HHHHHHHHHHHC
T ss_pred H-HHHHHHHHHHhc
Confidence 4 444444266544
No 10
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.97 E-value=7.8e-29 Score=242.84 Aligned_cols=177 Identities=18% Similarity=0.165 Sum_probs=153.6
Q ss_pred hcCCcccccCCCcccCCCCCCCCCCCCCCchHHHHHhhhccCCCCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEE
Q 048238 148 VVKPKSWCVGPLCLAELSPKNEEPKNELSKPAWIRWLDRKLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWV 227 (395)
Q Consensus 148 ~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~ 227 (395)
.++++++++|++..+.. ..+++++.+|++.. +++|||++||+.. ..+.+..+++++...+.+++|+
T Consensus 190 ~~~~~~~~~G~~~~~~~---------~~~~~~l~~~l~~~----~~~Vlv~~Gs~~~-~~~~~~~~~~al~~~~~~vv~~ 255 (404)
T 3h4t_A 190 PTDLGTVQTGAWILPDQ---------RPLSAELEGFLRAG----SPPVYVGFGSGPA-PAEAARVAIEAVRAQGRRVVLS 255 (404)
T ss_dssp TTCCSCCBCCCCCCCCC---------CCCCHHHHHHHHTS----SCCEEECCTTSCC-CTTHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCeEEeCccccCCC---------CCCCHHHHHHHhcC----CCeEEEECCCCCC-cHHHHHHHHHHHHhCCCEEEEE
Confidence 35678999998876542 34678999999865 7899999999986 6678889999999999999999
Q ss_pred EcCCCCccchhHHHHhcCCCeEEecCCCHHHHhcccCccceeecCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhh
Q 048238 228 IRKAESELGDGFEERVKGRGLVVRDWVNQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEI 307 (395)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~l 307 (395)
+++...... ..++|+.+.+|+||.++|+++++ ||||||+||+.|++++|+|+|++|+++||+.||+++++.
T Consensus 256 ~g~~~~~~~------~~~~~v~~~~~~~~~~ll~~~d~--~v~~gG~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~- 326 (404)
T 3h4t_A 256 SGWAGLGRI------DEGDDCLVVGEVNHQVLFGRVAA--VVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADL- 326 (404)
T ss_dssp CTTTTCCCS------SCCTTEEEESSCCHHHHGGGSSE--EEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHH-
T ss_pred eCCcccccc------cCCCCEEEecCCCHHHHHhhCcE--EEECCcHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHC-
Confidence 987422111 12479999999999999999888 999999999999999999999999999999999999888
Q ss_pred ceEEEeeccCCCCcCccCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q 048238 308 KVALRVETCDGSVRGFVKWQGLEKTVRELMGGEKGEKARTKVKELSEIAR 357 (395)
Q Consensus 308 g~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~ 357 (395)
|+|+.+.. .+++.+.|.++|+++++ + +|+++++++++.++
T Consensus 327 G~g~~l~~------~~~~~~~l~~ai~~ll~-~---~~~~~~~~~~~~~~ 366 (404)
T 3h4t_A 327 GVGVAHDG------PTPTVESLSAALATALT-P---GIRARAAAVAGTIR 366 (404)
T ss_dssp TSEEECSS------SSCCHHHHHHHHHHHTS-H---HHHHHHHHHHTTCC
T ss_pred CCEeccCc------CCCCHHHHHHHHHHHhC-H---HHHHHHHHHHHHHh
Confidence 99999986 67899999999999998 6 89999999999886
No 11
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.97 E-value=2.1e-28 Score=240.08 Aligned_cols=300 Identities=13% Similarity=0.079 Sum_probs=206.4
Q ss_pred HHHHhcHHHHHHHHhcCCCccEEEEC-CchhhHHHHHHHcCCCcEEEecchHHHHHHHHhhhhccCCCCCCCCCCccCCC
Q 048238 9 RATKLMQPHFERALESLPHVSFMVSD-GFLWWTLDSANKFGFPRFVFYGMNNYVMCVSSSVGANRSLSGVQSDDELVTPP 87 (395)
Q Consensus 9 ~a~~~~~~~l~~~l~~~~kpD~vI~D-~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p 87 (395)
.....+...+.++++++ +||+||+| ...+++..+|+.+|||++.+.+....... +. +. +
T Consensus 101 ~~~~~~~~~l~~~l~~~-~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~-~~----------------~~--~ 160 (415)
T 3rsc_A 101 RENVSVLRATAEALDGD-VPDLVLYDDFPFIAGQLLAARWRRPAVRLSAAFASNEH-YS----------------FS--Q 160 (415)
T ss_dssp HHHHHHHHHHHHHHSSS-CCSEEEEESTTHHHHHHHHHHTTCCEEEEESSCCCCSS-CC----------------HH--H
T ss_pred HHHHHHHHHHHHHHhcc-CCCEEEECchhhhHHHHHHHHhCCCEEEEEecccccCc-cc----------------cc--c
Confidence 33345567888889998 99999999 77888999999999999988754220000 00 00 0
Q ss_pred CCCCCCcCcccCCCCCCCCCCCCchHHHHHHHHh----------hcc-CcceeeeccccccchhhHHHhhhhcCCccccc
Q 048238 88 EFPWIKITKKDFDPPITDPEPKGPQFELFIDQIV----------STS-NSYGMIVNSFYELEPLFADHCNRVVKPKSWCV 156 (395)
Q Consensus 88 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~~~vlins~~~le~~~~~~~~~~~~~~~~~v 156 (395)
.+.. ..+...+..+ ......+.+... ... ..+..++...+.+ +.....++.++.++
T Consensus 161 ~~~~--~~~~~~p~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~v 227 (415)
T 3rsc_A 161 DMVT--LAGTIDPLDL------PVFRDTLRDLLAEHGLSRSVVDCWNHVEQLNLVFVPKAF-----QIAGDTFDDRFVFV 227 (415)
T ss_dssp HHHH--HHTCCCGGGC------HHHHHHHHHHHHHTTCCCCHHHHHTCCCSEEEESSCTTT-----STTGGGCCTTEEEC
T ss_pred cccc--ccccCChhhH------HHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcCccc-----CCCcccCCCceEEe
Confidence 0000 0000000000 000001111100 001 1144555443333 33344567889999
Q ss_pred CCCcccCCCCCCCCCCCCCCchHHHHHhhhccCCCCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccc
Q 048238 157 GPLCLAELSPKNEEPKNELSKPAWIRWLDRKLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELG 236 (395)
Q Consensus 157 Gpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~ 236 (395)
||+..... +..+|.... +++++|||++||......+.+..+++++...+.+++|.++.... .
T Consensus 228 Gp~~~~~~--------------~~~~~~~~~--~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~--~ 289 (415)
T 3rsc_A 228 GPCFDDRR--------------FLGEWTRPA--DDLPVVLVSLGTTFNDRPGFFRDCARAFDGQPWHVVMTLGGQVD--P 289 (415)
T ss_dssp CCCCCCCG--------------GGCCCCCCS--SCCCEEEEECTTTSCCCHHHHHHHHHHHTTSSCEEEEECTTTSC--G
T ss_pred CCCCCCcc--------------cCcCccccC--CCCCEEEEECCCCCCChHHHHHHHHHHHhcCCcEEEEEeCCCCC--h
Confidence 99875422 112344433 56899999999997767788899999999888999999886311 1
Q ss_pred hhHHHHhcCCCeEEecCCCHHHHhcccCccceeecCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeecc
Q 048238 237 DGFEERVKGRGLVVRDWVNQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETC 316 (395)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~ 316 (395)
+.+. ..+.|+.+.+|+|+.++|+++++ +|||||+||++|++++|+|+|++|...||+.||+++++. |+|+.+..
T Consensus 290 ~~l~--~~~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~-g~g~~~~~- 363 (415)
T 3rsc_A 290 AALG--DLPPNVEAHRWVPHVKVLEQATV--CVTHGGMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQL-GLGAVLPG- 363 (415)
T ss_dssp GGGC--CCCTTEEEESCCCHHHHHHHEEE--EEESCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHH-TCEEECCG-
T ss_pred HHhc--CCCCcEEEEecCCHHHHHhhCCE--EEECCcHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHc-CCEEEccc-
Confidence 1111 12468999999999999999999 999999999999999999999999999999999999888 99999986
Q ss_pred CCCCcCccCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHH
Q 048238 317 DGSVRGFVKWQGLEKTVRELMGGEKGEKARTKVKELSEIARKAMEEEKGSSWRCLDMLLDET 378 (395)
Q Consensus 317 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~~~~~~l~~~~ 378 (395)
++++.+.|.++|+++++|+ +++++++++++.+.+ . ++..+.++.+.+.+
T Consensus 364 -----~~~~~~~l~~~i~~ll~~~---~~~~~~~~~~~~~~~----~-~~~~~~~~~i~~~~ 412 (415)
T 3rsc_A 364 -----EKADGDTLLAAVGAVAADP---ALLARVEAMRGHVRR----A-GGAARAADAVEAYL 412 (415)
T ss_dssp -----GGCCHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHH----S-CHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHcCH---HHHHHHHHHHHHHHh----c-CHHHHHHHHHHHHh
Confidence 6789999999999999998 899999999998863 3 44555555554443
No 12
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.96 E-value=5.6e-28 Score=234.69 Aligned_cols=278 Identities=14% Similarity=0.102 Sum_probs=195.7
Q ss_pred hcHHHHHHHHhcCCCccEEEECCchhhHHHHHHHcCCCcEEEecchHHHHHHHHhhhhccCCCCCCCCCCccCCCCCCCC
Q 048238 13 LMQPHFERALESLPHVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYVMCVSSSVGANRSLSGVQSDDELVTPPEFPWI 92 (395)
Q Consensus 13 ~~~~~l~~~l~~~~kpD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~lp~~ 92 (395)
.....+.+++++. +||+||+|.+..++..+|+.+|||++.+...+. ..+++
T Consensus 94 ~~~~~l~~~l~~~-~pD~Vi~~~~~~~~~~~a~~~giP~v~~~~~~~-------------------------~~~~~--- 144 (384)
T 2p6p_A 94 SSLPRMLDFSRAW-RPDLIVGGTMSYVAPLLALHLGVPHARQTWDAV-------------------------DADGI--- 144 (384)
T ss_dssp HHHHHHHHHHHHH-CCSEEEEETTCTHHHHHHHHHTCCEEEECCSSC-------------------------CCTTT---
T ss_pred HHHHHHHHHHhcc-CCcEEEECcchhhHHHHHHhcCCCEEEeccCCc-------------------------ccchh---
Confidence 3456677778888 999999998878888899999999998753210 00000
Q ss_pred CcCcccCCCCCCCCCCCCchHHHHHHHHh-hccCcceeeeccccccchhhHHHhhhhcC-CcccccCCCcccCCCCCCCC
Q 048238 93 KITKKDFDPPITDPEPKGPQFELFIDQIV-STSNSYGMIVNSFYELEPLFADHCNRVVK-PKSWCVGPLCLAELSPKNEE 170 (395)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vlins~~~le~~~~~~~~~~~~-~~~~~vGpl~~~~~~~~~~~ 170 (395)
... + ......+..+... ....++.+++++.+.++++. .++ .++.++++ . .
T Consensus 145 ---~~~----~-----~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~-~--~------- 196 (384)
T 2p6p_A 145 ---HPG----A-----DAELRPELSELGLERLPAPDLFIDICPPSLRPAN------AAPARMMRHVAT-S--R------- 196 (384)
T ss_dssp ---HHH----H-----HHHTHHHHHHTTCSSCCCCSEEEECSCGGGSCTT------SCCCEECCCCCC-C--C-------
T ss_pred ---hHH----H-----HHHHHHHHHHcCCCCCCCCCeEEEECCHHHCCCC------CCCCCceEecCC-C--C-------
Confidence 000 0 0000111111000 00115678888877665431 122 34455531 1 0
Q ss_pred CCCCCCchHHHHHhhhccCCCCCeeEEEecccccC-----CHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcC
Q 048238 171 PKNELSKPAWIRWLDRKLDEGSSVMYVAFGSQAEI-----SAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKG 245 (395)
Q Consensus 171 ~~~~~~~~~l~~~l~~~~~~~~~vv~vs~Gs~~~~-----~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 245 (395)
+.++.+|++.. +++++|||++||.... ..+.+..+++++...+.+++|++++. ..+.+. ..+
T Consensus 197 ------~~~~~~~l~~~--~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~---~~~~l~--~~~ 263 (384)
T 2p6p_A 197 ------QCPLEPWMYTR--DTRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRWDVELIVAAPDT---VAEALR--AEV 263 (384)
T ss_dssp ------CCBCCHHHHCC--CSSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTTTCEEEEECCHH---HHHHHH--HHC
T ss_pred ------CCCCCchhhcC--CCCCEEEEECCCCCccccccccHHHHHHHHHHHhcCCcEEEEEeCCC---CHHhhC--CCC
Confidence 12345788764 4678999999999764 34678889999988899999998752 111111 125
Q ss_pred CCeEEecCCCHHHHhcccCccceeecCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccC
Q 048238 246 RGLVVRDWVNQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVK 325 (395)
Q Consensus 246 ~~~~~~~~~pq~~ll~~~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~ 325 (395)
+|+.+ +|+||.++|+++++ ||||||+||++||+++|+|+|++|...||+.||+++++. |+|+.+.. .+++
T Consensus 264 ~~v~~-~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~-g~g~~~~~------~~~~ 333 (384)
T 2p6p_A 264 PQARV-GWTPLDVVAPTCDL--LVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADY-GAAIALLP------GEDS 333 (384)
T ss_dssp TTSEE-ECCCHHHHGGGCSE--EEECSCTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHH-TSEEECCT------TCCC
T ss_pred CceEE-cCCCHHHHHhhCCE--EEeCCcHHHHHHHHHhCCCEEEccCcccchHHHHHHHHC-CCeEecCc------CCCC
Confidence 78999 99999999999888 999999999999999999999999999999999999777 99999875 5789
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHH
Q 048238 326 WQGLEKTVRELMGGEKGEKARTKVKELSEIARKAMEEEKGSSWRCLDMLLDET 378 (395)
Q Consensus 326 ~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~~~~~~l~~~~ 378 (395)
.+.|.++|+++++|+ .++++++++++.+++ . ++..+.++.+.+.+
T Consensus 334 ~~~l~~~i~~ll~~~---~~~~~~~~~~~~~~~---~--~~~~~~~~~i~~~~ 378 (384)
T 2p6p_A 334 TEAIADSCQELQAKD---TYARRAQDLSREISG---M--PLPATVVTALEQLA 378 (384)
T ss_dssp HHHHHHHHHHHHHCH---HHHHHHHHHHHHHHT---S--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCH---HHHHHHHHHHHHHHh---C--CCHHHHHHHHHHHh
Confidence 999999999999988 899999999999973 2 33444444444333
No 13
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.96 E-value=1.1e-27 Score=233.31 Aligned_cols=308 Identities=14% Similarity=0.081 Sum_probs=203.5
Q ss_pred HHhcHHHHHHHHhcCCCccEEEEC-CchhhHHHHHHHcCCCcEEEecchHHHHHHHH--hhhhccCCCCCCCCCCccCCC
Q 048238 11 TKLMQPHFERALESLPHVSFMVSD-GFLWWTLDSANKFGFPRFVFYGMNNYVMCVSS--SVGANRSLSGVQSDDELVTPP 87 (395)
Q Consensus 11 ~~~~~~~l~~~l~~~~kpD~vI~D-~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~p 87 (395)
...+...+.+++++. +||+||+| .+..++..+|+.+|||++.+.+.......... ...... ....|
T Consensus 87 ~~~~~~~l~~~l~~~-~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 155 (402)
T 3ia7_A 87 NVAILRAAEEALGDN-PPDLVVYDVFPFIAGRLLAARWDRPAVRLTGGFAANEHYSLFKELWKSN----------GQRHP 155 (402)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEESTTHHHHHHHHHHHTCCEEEEESSCCCBTTBCHHHHHHHHH----------TCCCG
T ss_pred HHHHHHHHHHHHhcc-CCCEEEECchHHHHHHHHHHhhCCCEEEEecccccCccccccccccccc----------cccCh
Confidence 345567888889998 99999999 77889999999999999988643221000000 000000 00000
Q ss_pred CCCCCCcCcccCCCCCCCCCCCCchHHHHHHHHhhccCcceeeeccccccchhhHHHhhhhcCCcccccCCCcccCCCCC
Q 048238 88 EFPWIKITKKDFDPPITDPEPKGPQFELFIDQIVSTSNSYGMIVNSFYELEPLFADHCNRVVKPKSWCVGPLCLAELSPK 167 (395)
Q Consensus 88 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlins~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~ 167 (395)
.... .....+...+....... . ...... ...+..++...++++ .....++.++.++||+......
T Consensus 156 ~~~~--~~~~~~~~~~~~~g~~~-~---~~~~~~--~~~~~~l~~~~~~~~-----~~~~~~~~~~~~vGp~~~~~~~-- 220 (402)
T 3ia7_A 156 ADVE--AVHSVLVDLLGKYGVDT-P---VKEYWD--EIEGLTIVFLPKSFQ-----PFAETFDERFAFVGPTLTGRDG-- 220 (402)
T ss_dssp GGSH--HHHHHHHHHHHTTTCCS-C---HHHHHT--CCCSCEEESSCGGGS-----TTGGGCCTTEEECCCCCCC-----
T ss_pred hhHH--HHHHHHHHHHHHcCCCC-C---hhhhhc--CCCCeEEEEcChHhC-----CccccCCCCeEEeCCCCCCccc--
Confidence 0000 00000000000000000 0 000010 011444444433333 3334567889999998754321
Q ss_pred CCCCCCCCCchHHHHHhhhccCCCCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCC
Q 048238 168 NEEPKNELSKPAWIRWLDRKLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRG 247 (395)
Q Consensus 168 ~~~~~~~~~~~~l~~~l~~~~~~~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 247 (395)
...|+... +++++|||++||......+.+..+++++...+..++|.+|.... .+.+. ..++|
T Consensus 221 ------------~~~~~~~~--~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~--~~~~~ 282 (402)
T 3ia7_A 221 ------------QPGWQPPR--PDAPVLLVSLGNQFNEHPEFFRACAQAFADTPWHVVMAIGGFLD--PAVLG--PLPPN 282 (402)
T ss_dssp -------------CCCCCSS--TTCCEEEEECCSCSSCCHHHHHHHHHHHTTSSCEEEEECCTTSC--GGGGC--SCCTT
T ss_pred ------------CCCCcccC--CCCCEEEEECCCCCcchHHHHHHHHHHHhcCCcEEEEEeCCcCC--hhhhC--CCCCc
Confidence 12244333 56899999999998777788999999999888999999886311 11111 12468
Q ss_pred eEEecCCCHHHHhcccCccceeecCCchhHHHHHhcCCcEEeccC-CCchhHHHHHHhhhhceEEEeeccCCCCcCccCH
Q 048238 248 LVVRDWVNQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPI-MADQPLNARMVTEEIKVALRVETCDGSVRGFVKW 326 (395)
Q Consensus 248 ~~~~~~~pq~~ll~~~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~-~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~ 326 (395)
+.+.+|+|+.++|+++++ +|||||+||++|++++|+|+|++|. ..||+.||.++++. |+|+.+.. ++++.
T Consensus 283 v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~-g~g~~~~~------~~~~~ 353 (402)
T 3ia7_A 283 VEAHQWIPFHSVLAHARA--CLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIEL-GLGSVLRP------DQLEP 353 (402)
T ss_dssp EEEESCCCHHHHHTTEEE--EEECCCHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHT-TSEEECCG------GGCSH
T ss_pred EEEecCCCHHHHHhhCCE--EEECCCHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHc-CCEEEccC------CCCCH
Confidence 999999999999999999 9999999999999999999999999 99999999999888 99999986 67899
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHHH
Q 048238 327 QGLEKTVRELMGGEKGEKARTKVKELSEIARKAMEEEKGSSWRCLDMLLDETC 379 (395)
Q Consensus 327 ~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~~~~~~l~~~~~ 379 (395)
+.|.++|.++++|+ +++++++++++.+.+ . ++..+.++.+.+.+.
T Consensus 354 ~~l~~~~~~ll~~~---~~~~~~~~~~~~~~~----~-~~~~~~~~~i~~~~~ 398 (402)
T 3ia7_A 354 ASIREAVERLAADS---AVRERVRRMQRDILS----S-GGPARAADEVEAYLG 398 (402)
T ss_dssp HHHHHHHHHHHHCH---HHHHHHHHHHHHHHT----S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCH---HHHHHHHHHHHHHhh----C-ChHHHHHHHHHHHHh
Confidence 99999999999998 899999999988852 3 445555555544443
No 14
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.96 E-value=2.3e-28 Score=240.92 Aligned_cols=300 Identities=17% Similarity=0.130 Sum_probs=201.0
Q ss_pred HHhcHHHHHHHHhcCCCccEEEECCchhhHHHHHHHcCCCcEEEecchHHHHHHHHhhhhcc-CCCCCCCCCCccCCCCC
Q 048238 11 TKLMQPHFERALESLPHVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNYVMCVSSSVGANR-SLSGVQSDDELVTPPEF 89 (395)
Q Consensus 11 ~~~~~~~l~~~l~~~~kpD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~p~l 89 (395)
+..+...+.+++++. +||+||+|.+.+++..+|+.+|||++.+++...........+.... .. ....+++
T Consensus 89 ~~~~~~~l~~~l~~~-~pD~Vi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 159 (430)
T 2iyf_A 89 AIQALPQLADAYADD-IPDLVLHDITSYPARVLARRWGVPAVSLSPNLVAWKGYEEEVAEPMWRE--------PRQTERG 159 (430)
T ss_dssp HHHHHHHHHHHHTTS-CCSEEEEETTCHHHHHHHHHHTCCEEEEESSCCCCTTHHHHTHHHHHHH--------HHHSHHH
T ss_pred HHHHHHHHHHHhhcc-CCCEEEECCccHHHHHHHHHcCCCEEEEecccccccccccccccchhhh--------hccchHH
Confidence 345567788889988 9999999988778999999999999998865420000000000000 00 0000000
Q ss_pred CCCCcCcccCCCCCCCCCCCCchHHHHHHH------HhhccCcceeeeccccccchhhHHHhhhhcCCc-ccccCCCccc
Q 048238 90 PWIKITKKDFDPPITDPEPKGPQFELFIDQ------IVSTSNSYGMIVNSFYELEPLFADHCNRVVKPK-SWCVGPLCLA 162 (395)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~vlins~~~le~~~~~~~~~~~~~~-~~~vGpl~~~ 162 (395)
.. +. ....+++.+. ......++.+++++.+++++.. ..++++ +++|||++..
T Consensus 160 ~~--~~--------------~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~v~~vG~~~~~ 218 (430)
T 2iyf_A 160 RA--YY--------------ARFEAWLKENGITEHPDTFASHPPRSLVLIPKALQPHA-----DRVDEDVYTFVGACQGD 218 (430)
T ss_dssp HH--HH--------------HHHHHHHHHTTCCSCHHHHHHCCSSEEECSCGGGSTTG-----GGSCTTTEEECCCCC--
T ss_pred HH--HH--------------HHHHHHHHHhCCCCCHHHHhcCCCcEEEeCcHHhCCCc-----ccCCCccEEEeCCcCCC
Confidence 00 00 0000111100 0011146788999887776542 245667 9999987643
Q ss_pred CCCCCCCCCCCCCCchHHHHHhhhccCCCCCeeEEEecccccCCHHHHHHHHHHHHhC-CCcEEEEEcCCCCccchhHHH
Q 048238 163 ELSPKNEEPKNELSKPAWIRWLDRKLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQS-KVNFLWVIRKAESELGDGFEE 241 (395)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~-~~~~i~~~~~~~~~~~~~~~~ 241 (395)
... ..+|.+.. +++++||+++||......+.+..++++++.. +.+++|++|.... .+.+.
T Consensus 219 ~~~--------------~~~~~~~~--~~~~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~--~~~l~- 279 (430)
T 2iyf_A 219 RAE--------------EGGWQRPA--GAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKVT--PAELG- 279 (430)
T ss_dssp -----------------CCCCCCCT--TCSEEEEEECTTTCC-CHHHHHHHHHHHTTCTTEEEEEECC---C--GGGGC-
T ss_pred CCC--------------CCCCcccc--CCCCeEEEEcCCCCCCcHHHHHHHHHHHhcCCCeEEEEEeCCCCC--hHHhc-
Confidence 211 11344433 4578999999999855568888999999885 8899898876311 11111
Q ss_pred HhcCCCeEEecCCCHHHHhcccCccceeecCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCc
Q 048238 242 RVKGRGLVVRDWVNQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVR 321 (395)
Q Consensus 242 ~~~~~~~~~~~~~pq~~ll~~~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~ 321 (395)
..+.|+.+.+|+||.++|+++++ ||||||+||++||+++|+|+|++|..+||..||+++++. |+|+.+..
T Consensus 280 -~~~~~v~~~~~~~~~~~l~~ad~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~-g~g~~~~~------ 349 (430)
T 2iyf_A 280 -ELPDNVEVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGL-GVARKLAT------ 349 (430)
T ss_dssp -SCCTTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHT-TSEEECCC------
T ss_pred -cCCCCeEEEecCCHHHHhhccCE--EEECCCccHHHHHHHhCCCEEECCCccchHHHHHHHHHc-CCEEEcCC------
Confidence 12468999999999999999999 999999999999999999999999999999999999877 99999985
Q ss_pred CccCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhCCCchHHHHHHHHHH
Q 048238 322 GFVKWQGLEKTVRELMGGEKGEKARTKVKELSEIARKAMEEEKGSSWRCLDMLLDE 377 (395)
Q Consensus 322 ~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~~~~~~l~~~ 377 (395)
++++.+.|.++|.++++|+ .+++++.++++.+.+. ++..+.++.+.+.
T Consensus 350 ~~~~~~~l~~~i~~ll~~~---~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~ 397 (430)
T 2iyf_A 350 EEATADLLRETALALVDDP---EVARRLRRIQAEMAQE-----GGTRRAADLIEAE 397 (430)
T ss_dssp C-CCHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHH-----CHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHcCH---HHHHHHHHHHHHHHhc-----CcHHHHHHHHHHH
Confidence 6789999999999999887 7888888888887642 4344444444433
No 15
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.96 E-value=1.3e-27 Score=236.74 Aligned_cols=176 Identities=13% Similarity=0.142 Sum_probs=137.6
Q ss_pred HHHHhhhccCCCCCeeEEEecccccC---CHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCH
Q 048238 180 WIRWLDRKLDEGSSVMYVAFGSQAEI---SAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQ 256 (395)
Q Consensus 180 l~~~l~~~~~~~~~vv~vs~Gs~~~~---~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq 256 (395)
+.+|++.. +++++|||++||.... ..+.+..+++++...+++++|++++.... .+. ..++|+.+.+|+||
T Consensus 257 ~~~~l~~~--~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~---~l~--~~~~~v~~~~~~~~ 329 (441)
T 2yjn_A 257 VPEWLHDE--PERRRVCLTLGISSRENSIGQVSIEELLGAVGDVDAEIIATFDAQQLE---GVA--NIPDNVRTVGFVPM 329 (441)
T ss_dssp CCGGGSSC--CSSCEEEEEC----------CCSTTTTHHHHHTSSSEEEECCCTTTTS---SCS--SCCSSEEECCSCCH
T ss_pred cchHhhcC--CCCCEEEEECCCCcccccChHHHHHHHHHHHHcCCCEEEEEECCcchh---hhc--cCCCCEEEecCCCH
Confidence 45788765 5679999999999753 23566778889988899999998864211 010 12468999999999
Q ss_pred HHHhcccCccceeecCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHH
Q 048238 257 KEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVREL 336 (395)
Q Consensus 257 ~~ll~~~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~ 336 (395)
.++|+++++ ||||||+||++|++++|+|+|++|...||+.||+++++. |+|+.+.. .+++.+.|.++|+++
T Consensus 330 ~~ll~~ad~--~V~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~-g~g~~~~~------~~~~~~~l~~~i~~l 400 (441)
T 2yjn_A 330 HALLPTCAA--TVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEF-GAGIALPV------PELTPDQLRESVKRV 400 (441)
T ss_dssp HHHGGGCSE--EEECCCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHH-TSEEECCT------TTCCHHHHHHHHHHH
T ss_pred HHHHhhCCE--EEECCCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHc-CCEEEccc------ccCCHHHHHHHHHHH
Confidence 999999988 999999999999999999999999999999999999887 99999985 678999999999999
Q ss_pred hCCChhHHHHHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHHH
Q 048238 337 MGGEKGEKARTKVKELSEIARKAMEEEKGSSWRCLDMLLDETC 379 (395)
Q Consensus 337 l~~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~~~~~~l~~~~~ 379 (395)
++|+ +++++++++++.+++ . ++..+.++.+.+.+.
T Consensus 401 l~~~---~~~~~~~~~~~~~~~----~-~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 401 LDDP---AHRAGAARMRDDMLA----E-PSPAEVVGICEELAA 435 (441)
T ss_dssp HHCH---HHHHHHHHHHHHHHT----S-CCHHHHHHHHHHHHH
T ss_pred hcCH---HHHHHHHHHHHHHHc----C-CCHHHHHHHHHHHHH
Confidence 9988 899999999998863 2 334444444444343
No 16
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.94 E-value=3.7e-26 Score=196.65 Aligned_cols=164 Identities=23% Similarity=0.403 Sum_probs=138.9
Q ss_pred CCCchHHHHHhhhccCCCCCeeEEEecccc-cCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEec
Q 048238 174 ELSKPAWIRWLDRKLDEGSSVMYVAFGSQA-EISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRD 252 (395)
Q Consensus 174 ~~~~~~l~~~l~~~~~~~~~vv~vs~Gs~~-~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (395)
++++.++.+|++.. +++++|||++||.. ....+.+..+++++...+.+++|++++... .. .+.|+.+.+
T Consensus 5 ~~l~~~~~~~l~~~--~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~---~~-----~~~~v~~~~ 74 (170)
T 2o6l_A 5 KPLPKEMEDFVQSS--GENGVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGNKP---DT-----LGLNTRLYK 74 (170)
T ss_dssp CCCCHHHHHHHHTT--TTTCEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSSCC---TT-----CCTTEEEES
T ss_pred CCCCHHHHHHHHcC--CCCCEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCcCc---cc-----CCCcEEEec
Confidence 44789999999876 56799999999996 346788899999998888999999986421 11 236899999
Q ss_pred CCCHHHHhcccCccceeecCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHH
Q 048238 253 WVNQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKT 332 (395)
Q Consensus 253 ~~pq~~ll~~~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~ 332 (395)
|+|+.+++.|+.+.+||||||++|++|++++|+|+|++|...||..||+++++. |+|+.++. .+++.++|.++
T Consensus 75 ~~~~~~~l~~~~ad~~I~~~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~-g~g~~~~~------~~~~~~~l~~~ 147 (170)
T 2o6l_A 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKAR-GAAVRVDF------NTMSSTDLLNA 147 (170)
T ss_dssp SCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTT-TSEEECCT------TTCCHHHHHHH
T ss_pred CCCHHHHhcCCCcCEEEEcCCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHc-CCeEEecc------ccCCHHHHHHH
Confidence 999999995555555999999999999999999999999999999999999887 99999986 67899999999
Q ss_pred HHHHhCCChhHHHHHHHHHHHHHHH
Q 048238 333 VRELMGGEKGEKARTKVKELSEIAR 357 (395)
Q Consensus 333 i~~~l~~~~~~~~~~~a~~l~~~~~ 357 (395)
|.++++|+ .|+++++++++.++
T Consensus 148 i~~ll~~~---~~~~~a~~~~~~~~ 169 (170)
T 2o6l_A 148 LKRVINDP---SYKENVMKLSRIQH 169 (170)
T ss_dssp HHHHHHCH---HHHHHHHHHC----
T ss_pred HHHHHcCH---HHHHHHHHHHHHhh
Confidence 99999888 79999999999876
No 17
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.93 E-value=3.4e-25 Score=216.15 Aligned_cols=159 Identities=13% Similarity=0.206 Sum_probs=122.4
Q ss_pred HHHHhhhccCCCCCeeEEEecccccCC--------HHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEe
Q 048238 180 WIRWLDRKLDEGSSVMYVAFGSQAEIS--------AQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVR 251 (395)
Q Consensus 180 l~~~l~~~~~~~~~vv~vs~Gs~~~~~--------~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (395)
+.+|+... +++++|||++||..... .+.+..+++++...+.+++|+.++.. .+.+. ..++|+.+.
T Consensus 217 ~~~~~~~~--~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~---~~~l~--~~~~~v~~~ 289 (398)
T 4fzr_A 217 VPSWVFEE--RKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKLGFEVVVAVSDKL---AQTLQ--PLPEGVLAA 289 (398)
T ss_dssp CCHHHHSC--CSSCEEECC----------------CCSHHHHHHHGGGGTCEEEECCCC-------------CCTTEEEE
T ss_pred CchhhhcC--CCCCEEEEEccCcccccccccccchHHHHHHHHHHHHhCCCEEEEEeCCcc---hhhhc--cCCCcEEEe
Confidence 44666654 56899999999996432 35678889999888999999988642 11111 125799999
Q ss_pred cCCCHHHHhcccCccceeecCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHH
Q 048238 252 DWVNQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEK 331 (395)
Q Consensus 252 ~~~pq~~ll~~~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~ 331 (395)
+|+|+.++|+++++ ||||||.||++||+++|+|+|++|...||+.|+.++++. |+|+.+.. .+++.+.|.+
T Consensus 290 ~~~~~~~ll~~ad~--~v~~gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~-g~g~~~~~------~~~~~~~l~~ 360 (398)
T 4fzr_A 290 GQFPLSAIMPACDV--VVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAA-GAGVEVPW------EQAGVESVLA 360 (398)
T ss_dssp SCCCHHHHGGGCSE--EEECCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHT-TSEEECC-------------CHHH
T ss_pred CcCCHHHHHhhCCE--EEecCCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHc-CCEEecCc------ccCCHHHHHH
Confidence 99999999999999 999999999999999999999999999999999999888 99999986 6789999999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHH
Q 048238 332 TVRELMGGEKGEKARTKVKELSEIAR 357 (395)
Q Consensus 332 ~i~~~l~~~~~~~~~~~a~~l~~~~~ 357 (395)
+|.++++|+ .+++++.+.++.+.
T Consensus 361 ai~~ll~~~---~~~~~~~~~~~~~~ 383 (398)
T 4fzr_A 361 ACARIRDDS---SYVGNARRLAAEMA 383 (398)
T ss_dssp HHHHHHHCT---HHHHHHHHHHHHHT
T ss_pred HHHHHHhCH---HHHHHHHHHHHHHH
Confidence 999999998 89999999998885
No 18
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.92 E-value=2.1e-24 Score=210.65 Aligned_cols=153 Identities=18% Similarity=0.239 Sum_probs=128.7
Q ss_pred HHhhhccCCCCCeeEEEecccccC--CHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCHHHH
Q 048238 182 RWLDRKLDEGSSVMYVAFGSQAEI--SAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQKEI 259 (395)
Q Consensus 182 ~~l~~~~~~~~~vv~vs~Gs~~~~--~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~l 259 (395)
+|+... +++++|||++||.... ..+.+..+++++...+.+++|+.++.... .+. ..++|+.+.+|+|+.++
T Consensus 224 ~~~~~~--~~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~g~~~~~---~l~--~~~~~v~~~~~~~~~~l 296 (398)
T 3oti_A 224 DRLPPV--PARPEVAITMGTIELQAFGIGAVEPIIAAAGEVDADFVLALGDLDIS---PLG--TLPRNVRAVGWTPLHTL 296 (398)
T ss_dssp SSCCCC--CSSCEEEECCTTTHHHHHCGGGHHHHHHHHHTSSSEEEEECTTSCCG---GGC--SCCTTEEEESSCCHHHH
T ss_pred hhhhcC--CCCCEEEEEcCCCccccCcHHHHHHHHHHHHcCCCEEEEEECCcChh---hhc--cCCCcEEEEccCCHHHH
Confidence 455544 5689999999999653 45678889999998899999999875211 111 12468999999999999
Q ss_pred hcccCccceeecCCchhHHHHHhcCCcEEeccCCCchhHHH--HHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHh
Q 048238 260 LWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNA--RMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELM 337 (395)
Q Consensus 260 l~~~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na--~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l 337 (395)
|+++++ ||||||.||++||+++|+|+|++|...||..|| .++++. |+|+.++. .+.+.+.|. +++
T Consensus 297 l~~ad~--~v~~~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~-g~g~~~~~------~~~~~~~l~----~ll 363 (398)
T 3oti_A 297 LRTCTA--VVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRR-GIGLVSTS------DKVDADLLR----RLI 363 (398)
T ss_dssp HTTCSE--EEECCCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHH-TSEEECCG------GGCCHHHHH----HHH
T ss_pred HhhCCE--EEECCCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHC-CCEEeeCC------CCCCHHHHH----HHH
Confidence 999999 999999999999999999999999999999999 999887 99999986 567887777 778
Q ss_pred CCChhHHHHHHHHHHHHHHH
Q 048238 338 GGEKGEKARTKVKELSEIAR 357 (395)
Q Consensus 338 ~~~~~~~~~~~a~~l~~~~~ 357 (395)
+|+ +++++++++++.+.
T Consensus 364 ~~~---~~~~~~~~~~~~~~ 380 (398)
T 3oti_A 364 GDE---SLRTAAREVREEMV 380 (398)
T ss_dssp HCH---HHHHHHHHHHHHHH
T ss_pred cCH---HHHHHHHHHHHHHH
Confidence 887 89999999999886
No 19
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.92 E-value=1.6e-23 Score=203.68 Aligned_cols=158 Identities=13% Similarity=0.159 Sum_probs=130.0
Q ss_pred HHhhhccCCCCCeeEEEeccccc--CC-HHHHHHHHHHHHhC-CCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCHH
Q 048238 182 RWLDRKLDEGSSVMYVAFGSQAE--IS-AQQLKEIATGLEQS-KVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQK 257 (395)
Q Consensus 182 ~~l~~~~~~~~~vv~vs~Gs~~~--~~-~~~~~~l~~~l~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~ 257 (395)
+|+... +++++||+++||... .. .+.+..++++ .+. +.+++|..++.. .+.+. ..++|+.+.+|+|+.
T Consensus 210 ~~~~~~--~~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~~~~~~---~~~l~--~~~~~v~~~~~~~~~ 281 (391)
T 3tsa_A 210 AWGAAR--TSARRVCICMGRMVLNATGPAPLLRAVAAA-TELPGVEAVIAVPPEH---RALLT--DLPDNARIAESVPLN 281 (391)
T ss_dssp GGGSSC--CSSEEEEEECCHHHHHHHCSHHHHHHHHHH-HTSTTEEEEEECCGGG---GGGCT--TCCTTEEECCSCCGG
T ss_pred chhhcC--CCCCEEEEEcCCCCCcccchHHHHHHHHHh-ccCCCeEEEEEECCcc---hhhcc--cCCCCEEEeccCCHH
Confidence 566554 567999999999953 23 6778888888 776 789999887631 11111 124689999999999
Q ss_pred HHhcccCccceeecCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHh
Q 048238 258 EILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELM 337 (395)
Q Consensus 258 ~ll~~~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l 337 (395)
++|+++++ ||||||.||++||+++|+|+|++|...||..|+.++++. |+|+.+... ..+.+.+.|.++|.+++
T Consensus 282 ~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~-g~g~~~~~~----~~~~~~~~l~~ai~~ll 354 (391)
T 3tsa_A 282 LFLRTCEL--VICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAA-GAGICLPDE----QAQSDHEQFTDSIATVL 354 (391)
T ss_dssp GTGGGCSE--EEECCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHT-TSEEECCSH----HHHTCHHHHHHHHHHHH
T ss_pred HHHhhCCE--EEeCCCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHc-CCEEecCcc----cccCCHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999999999999999888 999998720 02478999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHH
Q 048238 338 GGEKGEKARTKVKELSEIAR 357 (395)
Q Consensus 338 ~~~~~~~~~~~a~~l~~~~~ 357 (395)
+|+ ++++++.++++.+.
T Consensus 355 ~~~---~~~~~~~~~~~~~~ 371 (391)
T 3tsa_A 355 GDT---GFAAAAIKLSDEIT 371 (391)
T ss_dssp TCT---HHHHHHHHHHHHHH
T ss_pred cCH---HHHHHHHHHHHHHH
Confidence 998 89999999888885
No 20
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.90 E-value=3.8e-22 Score=195.01 Aligned_cols=152 Identities=18% Similarity=0.289 Sum_probs=131.3
Q ss_pred CCCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCHHHHhcccCcccee
Q 048238 190 EGSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQKEILWHESVQGFL 269 (395)
Q Consensus 190 ~~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~I 269 (395)
+++++||+++||......+.+..+++++.+.+..++|+.+... ..+.+. ..++|+.+.+|+|+.++|+++++ ||
T Consensus 240 ~~~~~vlv~~G~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~--~~~~l~--~~~~~v~~~~~~~~~~~l~~ad~--~v 313 (412)
T 3otg_A 240 TARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSL--DVSGLG--EVPANVRLESWVPQAALLPHVDL--VV 313 (412)
T ss_dssp TTSCEEEEECTTTTCSCHHHHHHHHHHHHTSSSEEEEECCSSC--CCTTCC--CCCTTEEEESCCCHHHHGGGCSE--EE
T ss_pred CCCCEEEEEcCCCCcCcHHHHHHHHHHHHcCCCEEEEEECCCC--Chhhhc--cCCCcEEEeCCCCHHHHHhcCcE--EE
Confidence 4678999999999755678889999999988999999988742 011110 12468999999999999999999 99
Q ss_pred ecCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHhCCChhHHHHHHH
Q 048238 270 SHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGEKGEKARTKV 349 (395)
Q Consensus 270 thgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a 349 (395)
+|||++|++||+++|+|+|++|...||..|+..+++. |+|+.+.. ++++++.|.++|.++++|+ .+++++
T Consensus 314 ~~~g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~-g~g~~~~~------~~~~~~~l~~ai~~ll~~~---~~~~~~ 383 (412)
T 3otg_A 314 HHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQA-GAGDHLLP------DNISPDSVSGAAKRLLAEE---SYRAGA 383 (412)
T ss_dssp ESCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHH-TSEEECCG------GGCCHHHHHHHHHHHHHCH---HHHHHH
T ss_pred ECCchHHHHHHHHhCCCEEecCCchhHHHHHHHHHHc-CCEEecCc------ccCCHHHHHHHHHHHHhCH---HHHHHH
Confidence 9999999999999999999999999999999999888 99999986 6789999999999999988 788888
Q ss_pred HHHHHHHH
Q 048238 350 KELSEIAR 357 (395)
Q Consensus 350 ~~l~~~~~ 357 (395)
.+.++.+.
T Consensus 384 ~~~~~~~~ 391 (412)
T 3otg_A 384 RAVAAEIA 391 (412)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888775
No 21
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.80 E-value=6.3e-19 Score=170.07 Aligned_cols=138 Identities=14% Similarity=0.103 Sum_probs=106.4
Q ss_pred CCCCeeEEEecccccCCHHHHHHHHHHHHh----CCCcEEEEEcCCCCccchhHHHH--hcCCCeEEecCCCHH-HHhcc
Q 048238 190 EGSSVMYVAFGSQAEISAQQLKEIATGLEQ----SKVNFLWVIRKAESELGDGFEER--VKGRGLVVRDWVNQK-EILWH 262 (395)
Q Consensus 190 ~~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~----~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~pq~-~ll~~ 262 (395)
+++++|+|..||.+.... .+.+.+++.. .+..++|++|... .+...+. ..+.++.+.+|+++. ++|+.
T Consensus 178 ~~~~~ilv~gGs~g~~~~--~~~~~~al~~l~~~~~~~vi~~~G~~~---~~~~~~~~~~~~~~~~v~~f~~dm~~~l~~ 252 (365)
T 3s2u_A 178 GRRVNLLVLGGSLGAEPL--NKLLPEALAQVPLEIRPAIRHQAGRQH---AEITAERYRTVAVEADVAPFISDMAAAYAW 252 (365)
T ss_dssp TSCCEEEECCTTTTCSHH--HHHHHHHHHTSCTTTCCEEEEECCTTT---HHHHHHHHHHTTCCCEEESCCSCHHHHHHH
T ss_pred CCCcEEEEECCcCCcccc--chhhHHHHHhcccccceEEEEecCccc---cccccceecccccccccccchhhhhhhhcc
Confidence 357899999999875432 2234444443 3457888887641 1222222 234678888999864 69999
Q ss_pred cCccceeecCCchhHHHHHhcCCcEEeccCC----CchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHhC
Q 048238 263 ESVQGFLSHCGWNSALESICAGVPILAWPIM----ADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMG 338 (395)
Q Consensus 263 ~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~----~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~ 338 (395)
+|+ +|||+|.+|++|++++|+|+|.+|+. .+|..||+.+++. |+|+.+.. .+++++.|.++|.++++
T Consensus 253 aDl--vI~raG~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~-G~a~~l~~------~~~~~~~L~~~i~~ll~ 323 (365)
T 3s2u_A 253 ADL--VICRAGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRS-GAGRLLPQ------KSTGAAELAAQLSEVLM 323 (365)
T ss_dssp CSE--EEECCCHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTT-TSEEECCT------TTCCHHHHHHHHHHHHH
T ss_pred ceE--EEecCCcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHC-CCEEEeec------CCCCHHHHHHHHHHHHC
Confidence 999 99999999999999999999999973 5799999999999 99999985 78899999999999999
Q ss_pred CCh
Q 048238 339 GEK 341 (395)
Q Consensus 339 ~~~ 341 (395)
|++
T Consensus 324 d~~ 326 (365)
T 3s2u_A 324 HPE 326 (365)
T ss_dssp CTH
T ss_pred CHH
Confidence 984
No 22
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=99.59 E-value=4.1e-15 Score=132.18 Aligned_cols=132 Identities=14% Similarity=0.080 Sum_probs=96.7
Q ss_pred CCCCeeEEEecccccCCHHHHHHH-----HHHHHhCC-CcEEEEEcCCCCccchhHHHHh--------------------
Q 048238 190 EGSSVMYVAFGSQAEISAQQLKEI-----ATGLEQSK-VNFLWVIRKAESELGDGFEERV-------------------- 243 (395)
Q Consensus 190 ~~~~vv~vs~Gs~~~~~~~~~~~l-----~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~-------------------- 243 (395)
+++++|||+.||... -++.+..+ +++|...+ .++++++|.........+....
T Consensus 26 ~~~~~VlVtgGS~~~-~n~li~~vl~~~~l~~L~~~~~~~vv~q~G~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~ 104 (224)
T 2jzc_A 26 IEEKALFVTCGATVP-FPKLVSCVLSDEFCQELIQYGFVRLIIQFGRNYSSEFEHLVQERGGQRESQKIPIDQFGCGDTA 104 (224)
T ss_dssp CCSCCEEEECCSCCS-CHHHHHHHTSHHHHHHHHTTTCCCEEECCCSSSCCCCCSHHHHHTCEECSCCCSSCTTCTTCSC
T ss_pred CCCCEEEEEcCCchH-HHHHHHHHHHHHHHHHHhcCCCeEEEEEECCCchhhHHHHHHhhhccccccccccccccccccc
Confidence 457999999999842 24444443 47887777 7899999985321122111111
Q ss_pred -------cCCCeEEecCCCHH-HHhc-ccCccceeecCCchhHHHHHhcCCcEEeccCC----CchhHHHHHHhhhhceE
Q 048238 244 -------KGRGLVVRDWVNQK-EILW-HESVQGFLSHCGWNSALESICAGVPILAWPIM----ADQPLNARMVTEEIKVA 310 (395)
Q Consensus 244 -------~~~~~~~~~~~pq~-~ll~-~~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~----~DQ~~na~~v~~~lg~g 310 (395)
..-++.+.+|+++. ++|+ .+++ +|||||+||++|++++|+|+|++|.. .||..||+++++. |+|
T Consensus 105 ~~~~~~~~~~~v~v~~f~~~m~~~l~~~Adl--vIshaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~-G~~ 181 (224)
T 2jzc_A 105 RQYVLMNGKLKVIGFDFSTKMQSIIRDYSDL--VISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVEL-GYV 181 (224)
T ss_dssp EEEESTTTSSEEEECCSSSSHHHHHHHHCSC--EEESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHH-SCC
T ss_pred cccccccCCceEEEeeccchHHHHHHhcCCE--EEECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHC-CCE
Confidence 11245677888765 7999 9999 99999999999999999999999984 4699999999888 998
Q ss_pred EEeeccCCCCcCccCHHHHHHHHHHH
Q 048238 311 LRVETCDGSVRGFVKWQGLEKTVREL 336 (395)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~l~~~i~~~ 336 (395)
+.+ +.+.|.++|.++
T Consensus 182 ~~~-----------~~~~L~~~i~~l 196 (224)
T 2jzc_A 182 WSC-----------APTETGLIAGLR 196 (224)
T ss_dssp CEE-----------CSCTTTHHHHHH
T ss_pred EEc-----------CHHHHHHHHHHH
Confidence 755 335666677666
No 23
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.53 E-value=6.2e-13 Score=127.17 Aligned_cols=134 Identities=17% Similarity=0.144 Sum_probs=101.4
Q ss_pred CCCeeEEEecccccCCHHHHHHHHHHHHhC--CCcEEEEEcCCCCccchhHHHHh---cCCCeEEecCCC-HHHHhcccC
Q 048238 191 GSSVMYVAFGSQAEISAQQLKEIATGLEQS--KVNFLWVIRKAESELGDGFEERV---KGRGLVVRDWVN-QKEILWHES 264 (395)
Q Consensus 191 ~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~--~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p-q~~ll~~~~ 264 (395)
++++|++..|+... ......+++++... +.++++++|... .+.+.+.. .-.++.+.+|++ ...+++.++
T Consensus 182 ~~~~il~~~g~~~~--~k~~~~li~a~~~l~~~~~~l~i~G~~~---~~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad 256 (364)
T 1f0k_A 182 GPVRVLVVGGSQGA--RILNQTMPQVAAKLGDSVTIWHQSGKGS---QQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWAD 256 (364)
T ss_dssp SSEEEEEECTTTCC--HHHHHHHHHHHHHHGGGEEEEEECCTTC---HHHHHHHHHHTTCTTSEEESCCSCHHHHHHHCS
T ss_pred CCcEEEEEcCchHh--HHHHHHHHHHHHHhcCCcEEEEEcCCch---HHHHHHHHhhcCCCceEEecchhhHHHHHHhCC
Confidence 45677777788754 33334444554432 567777777642 13333322 225799999994 577999999
Q ss_pred ccceeecCCchhHHHHHhcCCcEEeccCC---CchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHhCCC
Q 048238 265 VQGFLSHCGWNSALESICAGVPILAWPIM---ADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGE 340 (395)
Q Consensus 265 ~~~~IthgG~~s~~Ea~~~GvP~i~~P~~---~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~ 340 (395)
+ +|+++|.++++||+++|+|+|+.|.. .||..|+..+.+. |.|+.++. ++.+.+++.++|.++ |+
T Consensus 257 ~--~v~~sg~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~-g~g~~~~~------~d~~~~~la~~i~~l--~~ 324 (364)
T 1f0k_A 257 V--VVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKA-GAAKIIEQ------PQLSVDAVANTLAGW--SR 324 (364)
T ss_dssp E--EEECCCHHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHT-TSEEECCG------GGCCHHHHHHHHHTC--CH
T ss_pred E--EEECCchHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhC-CcEEEecc------ccCCHHHHHHHHHhc--CH
Confidence 9 99999999999999999999999987 7899999999888 99998886 567799999999988 65
No 24
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=99.36 E-value=1.5e-11 Score=113.49 Aligned_cols=116 Identities=8% Similarity=0.023 Sum_probs=89.9
Q ss_pred CCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHh-cCCCeEEecCCCHH-HHhcccCcccee
Q 048238 192 SSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERV-KGRGLVVRDWVNQK-EILWHESVQGFL 269 (395)
Q Consensus 192 ~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~pq~-~ll~~~~~~~~I 269 (395)
.+.|+|++|+..... ....+++++.... ++.+++|.... ..+.+.+.. ..+|+.+..|+++. ++++.+++ +|
T Consensus 157 ~~~ILv~~GG~d~~~--l~~~vl~~L~~~~-~i~vv~G~~~~-~~~~l~~~~~~~~~v~v~~~~~~m~~~m~~aDl--vI 230 (282)
T 3hbm_A 157 KYDFFICMGGTDIKN--LSLQIASELPKTK-IISIATSSSNP-NLKKLQKFAKLHNNIRLFIDHENIAKLMNESNK--LI 230 (282)
T ss_dssp CEEEEEECCSCCTTC--HHHHHHHHSCTTS-CEEEEECTTCT-THHHHHHHHHTCSSEEEEESCSCHHHHHHTEEE--EE
T ss_pred CCeEEEEECCCchhh--HHHHHHHHhhcCC-CEEEEECCCch-HHHHHHHHHhhCCCEEEEeCHHHHHHHHHHCCE--EE
Confidence 568999999875433 4456677776543 57777776422 223333322 23589999999865 59999999 99
Q ss_pred ecCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeec
Q 048238 270 SHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVET 315 (395)
Q Consensus 270 thgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~ 315 (395)
|+|| +|++|+++.|+|+|.+|...+|..||+.+++. |+++.+..
T Consensus 231 ~~gG-~T~~E~~~~g~P~i~ip~~~~Q~~nA~~l~~~-G~~~~~~~ 274 (282)
T 3hbm_A 231 ISAS-SLVNEALLLKANFKAICYVKNQESTATWLAKK-GYEVEYKY 274 (282)
T ss_dssp EESS-HHHHHHHHTTCCEEEECCSGGGHHHHHHHHHT-TCEEECGG
T ss_pred ECCc-HHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHC-CCEEEcch
Confidence 9999 89999999999999999999999999999888 99998874
No 25
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=98.98 E-value=7.1e-09 Score=100.88 Aligned_cols=131 Identities=10% Similarity=0.168 Sum_probs=84.3
Q ss_pred CCCeeEEEecccccCCHHHHHHHHHHHHh-----CCCcEEEEEcCCCCccchhHHHHh-cCCCeEEecCCC---HHHHhc
Q 048238 191 GSSVMYVAFGSQAEISAQQLKEIATGLEQ-----SKVNFLWVIRKAESELGDGFEERV-KGRGLVVRDWVN---QKEILW 261 (395)
Q Consensus 191 ~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~-----~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p---q~~ll~ 261 (395)
++++++++.|....... .+..+++++.. .+.+|++..++. ..+.+.+.+.. ..+++.+.++++ ...+++
T Consensus 223 ~~~~vlv~~~r~~~~~~-~l~~ll~a~~~l~~~~~~~~~v~~~~~~-~~~~~~l~~~~~~~~~v~l~~~l~~~~~~~l~~ 300 (403)
T 3ot5_A 223 DNRLILMTAHRRENLGE-PMQGMFEAVREIVESREDTELVYPMHLN-PAVREKAMAILGGHERIHLIEPLDAIDFHNFLR 300 (403)
T ss_dssp TCEEEEECCCCHHHHTT-HHHHHHHHHHHHHHHCTTEEEEEECCSC-HHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHH
T ss_pred CCCEEEEEeCcccccCc-HHHHHHHHHHHHHHhCCCceEEEecCCC-HHHHHHHHHHhCCCCCEEEeCCCCHHHHHHHHH
Confidence 35677777654322111 13344444432 456777766542 11111222212 236898889886 345889
Q ss_pred ccCccceeecCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHhCCC
Q 048238 262 HESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGE 340 (395)
Q Consensus 262 ~~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~ 340 (395)
++++ +|+.+|..+ .||.++|+|+|+.|-.++++. +++. |.|+.+.. +.++|.+++.++++|+
T Consensus 301 ~ad~--vv~~SGg~~-~EA~a~g~PvV~~~~~~~~~e----~v~~-g~~~lv~~---------d~~~l~~ai~~ll~~~ 362 (403)
T 3ot5_A 301 KSYL--VFTDSGGVQ-EEAPGMGVPVLVLRDTTERPE----GIEA-GTLKLIGT---------NKENLIKEALDLLDNK 362 (403)
T ss_dssp HEEE--EEECCHHHH-HHGGGTTCCEEECCSSCSCHH----HHHH-TSEEECCS---------CHHHHHHHHHHHHHCH
T ss_pred hcCE--EEECCccHH-HHHHHhCCCEEEecCCCcchh----heeC-CcEEEcCC---------CHHHHHHHHHHHHcCH
Confidence 9998 999886333 799999999999976666554 2367 88877652 7899999999999887
No 26
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=98.98 E-value=4.2e-09 Score=102.26 Aligned_cols=131 Identities=12% Similarity=0.169 Sum_probs=83.8
Q ss_pred CCCeeEEEecccccCCHHHHHHHHHHHHh-----CCCcEEEEEcCCCCccchhHHHHh-cCCCeEEecCCC---HHHHhc
Q 048238 191 GSSVMYVAFGSQAEISAQQLKEIATGLEQ-----SKVNFLWVIRKAESELGDGFEERV-KGRGLVVRDWVN---QKEILW 261 (395)
Q Consensus 191 ~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~-----~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p---q~~ll~ 261 (395)
++++++++.+-...... .+..+++++.. .+.++++..+.. ....+.+.+.. ..+++.+.++++ ...+++
T Consensus 229 ~~~~vlv~~hR~~~~~~-~~~~ll~A~~~l~~~~~~~~~v~~~g~~-~~~~~~l~~~~~~~~~v~~~~~lg~~~~~~l~~ 306 (396)
T 3dzc_A 229 SKKLILVTGHRRESFGG-GFERICQALITTAEQHPECQILYPVHLN-PNVREPVNKLLKGVSNIVLIEPQQYLPFVYLMD 306 (396)
T ss_dssp TSEEEEEECSCBCCCTT-HHHHHHHHHHHHHHHCTTEEEEEECCBC-HHHHHHHHHHTTTCTTEEEECCCCHHHHHHHHH
T ss_pred CCCEEEEEECCcccchh-HHHHHHHHHHHHHHhCCCceEEEEeCCC-hHHHHHHHHHHcCCCCEEEeCCCCHHHHHHHHH
Confidence 45677776532222211 13455555543 356777766542 11112222222 246888877775 346899
Q ss_pred ccCccceeecCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHhCCC
Q 048238 262 HESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGE 340 (395)
Q Consensus 262 ~~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~ 340 (395)
.+++ +|+-+| |.+.||.++|+|+|+..-..+++ .+++. |.++.+.. +.++|.+++.++++|+
T Consensus 307 ~ad~--vv~~SG-g~~~EA~a~G~PvV~~~~~~~~~----e~v~~-G~~~lv~~---------d~~~l~~ai~~ll~d~ 368 (396)
T 3dzc_A 307 RAHI--ILTDSG-GIQEEAPSLGKPVLVMRETTERP----EAVAA-GTVKLVGT---------NQQQICDALSLLLTDP 368 (396)
T ss_dssp HCSE--EEESCS-GGGTTGGGGTCCEEECCSSCSCH----HHHHH-TSEEECTT---------CHHHHHHHHHHHHHCH
T ss_pred hcCE--EEECCc-cHHHHHHHcCCCEEEccCCCcch----HHHHc-CceEEcCC---------CHHHHHHHHHHHHcCH
Confidence 9999 999998 66679999999999985555543 23467 88865542 6899999999999887
No 27
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=98.97 E-value=1.9e-08 Score=97.15 Aligned_cols=290 Identities=12% Similarity=0.046 Sum_probs=156.7
Q ss_pred HHHHHhcHHHHHHHHhcCCCccEEEE--CCchhhHHHHHHHcCCCcEEEecchHHHHHHHHhhhhccCCCCCCCCCCccC
Q 048238 8 TRATKLMQPHFERALESLPHVSFMVS--DGFLWWTLDSANKFGFPRFVFYGMNNYVMCVSSSVGANRSLSGVQSDDELVT 85 (395)
Q Consensus 8 ~~a~~~~~~~l~~~l~~~~kpD~vI~--D~~~~~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 85 (395)
.+.+..+...+.++|++. +||+|++ |....++..+|..+|||.+.+...
T Consensus 76 ~~~~~~~~~~l~~~l~~~-kPD~Vlv~gd~~~~~aalaA~~~~IPv~h~eag---------------------------- 126 (385)
T 4hwg_A 76 AKSIGLVIEKVDEVLEKE-KPDAVLFYGDTNSCLSAIAAKRRKIPIFHMEAG---------------------------- 126 (385)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCSEEEEESCSGGGGGHHHHHHTTCCEEEESCC----------------------------
T ss_pred HHHHHHHHHHHHHHHHhc-CCcEEEEECCchHHHHHHHHHHhCCCEEEEeCC----------------------------
Confidence 345566788899999998 9999887 334445577889999996644210
Q ss_pred CCCCCCCCcCcccCCCCCCCCCCCCchHHHHHHHHhhccCcceeeeccccccchhhHHHhh-hhc-CCcccccCCCcccC
Q 048238 86 PPEFPWIKITKKDFDPPITDPEPKGPQFELFIDQIVSTSNSYGMIVNSFYELEPLFADHCN-RVV-KPKSWCVGPLCLAE 163 (395)
Q Consensus 86 ~p~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlins~~~le~~~~~~~~-~~~-~~~~~~vGpl~~~~ 163 (395)
+.. +. .. . -.+..+.... .-++.+++++-. ..+.+. .-. +.+++.+|-...+.
T Consensus 127 ---lrs--~~---------~~---~-pee~nR~~~~--~~a~~~~~~te~-----~~~~l~~~G~~~~~I~vtGnp~~D~ 181 (385)
T 4hwg_A 127 ---NRC--FD---------QR---V-PEEINRKIID--HISDVNITLTEH-----ARRYLIAEGLPAELTFKSGSHMPEV 181 (385)
T ss_dssp ---CCC--SC---------TT---S-THHHHHHHHH--HHCSEEEESSHH-----HHHHHHHTTCCGGGEEECCCSHHHH
T ss_pred ---Ccc--cc---------cc---C-cHHHHHHHHH--hhhceeecCCHH-----HHHHHHHcCCCcCcEEEECCchHHH
Confidence 000 00 00 0 0011122211 124555655522 112221 112 24688888432221
Q ss_pred CCCCCCCCCCCCCchHHHHHhhhccCCCCCeeEEEecccccCC-HHHHHHHHHHHHhC----CCcEEEEEcCCCCccchh
Q 048238 164 LSPKNEEPKNELSKPAWIRWLDRKLDEGSSVMYVAFGSQAEIS-AQQLKEIATGLEQS----KVNFLWVIRKAESELGDG 238 (395)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vv~vs~Gs~~~~~-~~~~~~l~~~l~~~----~~~~i~~~~~~~~~~~~~ 238 (395)
... . .......++.+.+.-. +++.++++.|...... .+.+..+++++... +..+++..++. ..+.
T Consensus 182 ~~~---~-~~~~~~~~~~~~lgl~---~~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~~~~vv~p~~p~---~~~~ 251 (385)
T 4hwg_A 182 LDR---F-MPKILKSDILDKLSLT---PKQYFLISSHREENVDVKNNLKELLNSLQMLIKEYNFLIIFSTHPR---TKKR 251 (385)
T ss_dssp HHH---H-HHHHHHCCHHHHTTCC---TTSEEEEEECCC-----CHHHHHHHHHHHHHHHHHCCEEEEEECHH---HHHH
T ss_pred HHH---h-hhhcchhHHHHHcCCC---cCCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcCCeEEEEECChH---HHHH
Confidence 000 0 0000111233333322 3678888887754332 24455666666542 66777766431 1111
Q ss_pred HHHH---h-cCCCeEEecCCC---HHHHhcccCccceeecCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEE
Q 048238 239 FEER---V-KGRGLVVRDWVN---QKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVAL 311 (395)
Q Consensus 239 ~~~~---~-~~~~~~~~~~~p---q~~ll~~~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~ 311 (395)
+.+. . ..+++.+.+.++ ...+++++++ +||-+|. .+.||.++|+|+|.++-..+.+. + ++. |.++
T Consensus 252 l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adl--vvt~SGg-v~~EA~alG~Pvv~~~~~ter~e-~---v~~-G~~~ 323 (385)
T 4hwg_A 252 LEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFC--ILSDSGT-ITEEASILNLPALNIREAHERPE-G---MDA-GTLI 323 (385)
T ss_dssp HHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSE--EEECCTT-HHHHHHHTTCCEEECSSSCSCTH-H---HHH-TCCE
T ss_pred HHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcE--EEECCcc-HHHHHHHcCCCEEEcCCCccchh-h---hhc-CceE
Confidence 1111 1 135777766655 3468999999 9999886 46999999999999987554222 2 366 8777
Q ss_pred EeeccCCCCcCccCHHHHHHHHHHHhCCCh-hHHHHHHHHHHHHHHHHhh-hhCCCchHHHHHHHHHHHHHhhhhhcc
Q 048238 312 RVETCDGSVRGFVKWQGLEKTVRELMGGEK-GEKARTKVKELSEIARKAM-EEEKGSSWRCLDMLLDETCKYEQQLHD 387 (395)
Q Consensus 312 ~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l~~~~~~~~-~~~~g~~~~~~~~l~~~~~~~~~~~~~ 387 (395)
.+.. +.+.|.+++.++++|++ .+.+++++. .. .++ +++.+-++.+.+++......+|.
T Consensus 324 lv~~---------d~~~i~~ai~~ll~d~~~~~~m~~~~~--------~~~g~g-~aa~rI~~~l~~~~~~~~~~~~~ 383 (385)
T 4hwg_A 324 MSGF---------KAERVLQAVKTITEEHDNNKRTQGLVP--------DYNEAG-LVSKKILRIVLSYVDYINRTVWF 383 (385)
T ss_dssp ECCS---------SHHHHHHHHHHHHTTCBTTBCCSCCCH--------HHHTCC-CHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EcCC---------CHHHHHHHHHHHHhChHHHHHhhccCC--------CCCCCC-hHHHHHHHHHHHHhhhccccccc
Confidence 6642 78999999999998874 111222221 12 345 55555555555555544444443
No 28
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=98.95 E-value=2.4e-08 Score=95.63 Aligned_cols=129 Identities=15% Similarity=0.261 Sum_probs=84.5
Q ss_pred CCeeEEEecccccCCHHHHHHHHHHHHh-----CCCcEEEEEcCCCCccchhHHHHhc-CCCeEEecCCCH---HHHhcc
Q 048238 192 SSVMYVAFGSQAEISAQQLKEIATGLEQ-----SKVNFLWVIRKAESELGDGFEERVK-GRGLVVRDWVNQ---KEILWH 262 (395)
Q Consensus 192 ~~vv~vs~Gs~~~~~~~~~~~l~~~l~~-----~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pq---~~ll~~ 262 (395)
+++|+++.|...... .+..+++++.. .+..+++..|.. ......+.+... .+++.+.++++. ..+++.
T Consensus 198 ~~~vl~~~gr~~~~k--~~~~ll~a~~~l~~~~~~~~lv~~~g~~-~~~~~~l~~~~~~~~~v~~~g~~g~~~~~~~~~~ 274 (376)
T 1v4v_A 198 GPYVTVTMHRRENWP--LLSDLAQALKRVAEAFPHLTFVYPVHLN-PVVREAVFPVLKGVRNFVLLDPLEYGSMAALMRA 274 (376)
T ss_dssp SCEEEECCCCGGGGG--GHHHHHHHHHHHHHHCTTSEEEEECCSC-HHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHT
T ss_pred CCEEEEEeCcccchH--HHHHHHHHHHHHHhhCCCeEEEEECCCC-HHHHHHHHHHhccCCCEEEECCCCHHHHHHHHHh
Confidence 466777777553221 23334444432 356666655642 111222333222 358888866654 479999
Q ss_pred cCccceeecCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHhCCC
Q 048238 263 ESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGE 340 (395)
Q Consensus 263 ~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~ 340 (395)
+++ ||+++| |.+.||+++|+|+|+.+..+++.. +.+. |.|+.+.. +.++|.++|.++++|+
T Consensus 275 ad~--~v~~S~-g~~lEA~a~G~PvI~~~~~~~~~~----~~~~-g~g~lv~~---------d~~~la~~i~~ll~d~ 335 (376)
T 1v4v_A 275 SLL--LVTDSG-GLQEEGAALGVPVVVLRNVTERPE----GLKA-GILKLAGT---------DPEGVYRVVKGLLENP 335 (376)
T ss_dssp EEE--EEESCH-HHHHHHHHTTCCEEECSSSCSCHH----HHHH-TSEEECCS---------CHHHHHHHHHHHHTCH
T ss_pred CcE--EEECCc-CHHHHHHHcCCCEEeccCCCcchh----hhcC-CceEECCC---------CHHHHHHHHHHHHhCh
Confidence 999 999884 446699999999999887666655 2366 88877642 8899999999999987
No 29
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=98.85 E-value=6e-08 Score=92.99 Aligned_cols=130 Identities=14% Similarity=0.199 Sum_probs=85.7
Q ss_pred CCeeEEEecccccCCHHHHHHHHHHHHh-----CCCcEEEEEcCCCCccchhHHHHhc-CCCeEEecCCCH---HHHhcc
Q 048238 192 SSVMYVAFGSQAEISAQQLKEIATGLEQ-----SKVNFLWVIRKAESELGDGFEERVK-GRGLVVRDWVNQ---KEILWH 262 (395)
Q Consensus 192 ~~vv~vs~Gs~~~~~~~~~~~l~~~l~~-----~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pq---~~ll~~ 262 (395)
+++++++.|...... +.+..+++++.. .+..+++..+.. ....+.+.+... .+++.+.++++. .++++.
T Consensus 205 ~~~vl~~~gr~~~~~-kg~~~li~a~~~l~~~~~~~~l~i~~g~~-~~~~~~l~~~~~~~~~v~~~g~~~~~~~~~~~~~ 282 (384)
T 1vgv_A 205 KKMILVTGHRRESFG-RGFEEICHALADIATTHQDIQIVYPVHLN-PNVREPVNRILGHVKNVILIDPQEYLPFVWLMNH 282 (384)
T ss_dssp SEEEEEECCCBSSCC-HHHHHHHHHHHHHHHHCTTEEEEEECCBC-HHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHH
T ss_pred CCEEEEEeCCccccc-hHHHHHHHHHHHHHhhCCCeEEEEEcCCC-HHHHHHHHHHhhcCCCEEEeCCCCHHHHHHHHHh
Confidence 567888888765332 223444444432 245666654531 111122222222 368888777664 568999
Q ss_pred cCccceeecCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHhCCC
Q 048238 263 ESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGE 340 (395)
Q Consensus 263 ~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~ 340 (395)
+++ ||+.+|. .+.||+++|+|+|+.+..++.. .+.+. |.|+.+. . +.+++.++|.++++|+
T Consensus 283 ad~--~v~~Sg~-~~lEA~a~G~PvI~~~~~~~~~----e~v~~-g~g~lv~-------~--d~~~la~~i~~ll~d~ 343 (384)
T 1vgv_A 283 AWL--ILTDSGG-IQEEAPSLGKPVLVMRDTTERP----EAVTA-GTVRLVG-------T--DKQRIVEEVTRLLKDE 343 (384)
T ss_dssp CSE--EEESSST-GGGTGGGGTCCEEEESSCCSCH----HHHHH-TSEEEEC-------S--SHHHHHHHHHHHHHCH
T ss_pred CcE--EEECCcc-hHHHHHHcCCCEEEccCCCCcc----hhhhC-CceEEeC-------C--CHHHHHHHHHHHHhCh
Confidence 999 9999864 4889999999999998744432 23466 8888876 2 8899999999999887
No 30
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=98.83 E-value=1.9e-06 Score=82.40 Aligned_cols=250 Identities=11% Similarity=0.011 Sum_probs=138.4
Q ss_pred cHHHHHHHHhcCCCccEEEECCchh--hHHHHHHHcCCCcEEEecchHHHHHHHHhhhhccCCCCCCCCCCccCCCCCCC
Q 048238 14 MQPHFERALESLPHVSFMVSDGFLW--WTLDSANKFGFPRFVFYGMNNYVMCVSSSVGANRSLSGVQSDDELVTPPEFPW 91 (395)
Q Consensus 14 ~~~~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~lgIP~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~lp~ 91 (395)
....+.+++++. +||+|++..... +...+++.+++|.+++........
T Consensus 74 ~~~~l~~~~~~~-~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~----------------------------- 123 (394)
T 3okp_A 74 TAHAMAEIIRER-EIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEVG----------------------------- 123 (394)
T ss_dssp HHHHHHHHHHHT-TCSEEEESSCTTGGGGHHHHHHTTCSEEEEECCSTHHH-----------------------------
T ss_pred hHHHHHHHHHhc-CCCEEEECCcchHHHHHHHHHhcCCCcEEEEeccchhh-----------------------------
Confidence 345678888888 999999865443 455578899999665544322110
Q ss_pred CCcCcccCCCCCCCCCCCCchHHHHHHHHhhccCcceeeeccccccchhhHHHhhhhc--CCcccccCCCcccCCCCCCC
Q 048238 92 IKITKKDFDPPITDPEPKGPQFELFIDQIVSTSNSYGMIVNSFYELEPLFADHCNRVV--KPKSWCVGPLCLAELSPKNE 169 (395)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlins~~~le~~~~~~~~~~~--~~~~~~vGpl~~~~~~~~~~ 169 (395)
+. . ........ ......+|.+++.|-.. .+.+...+ ..++..+..-+....-.
T Consensus 124 --~~----------~--~~~~~~~~---~~~~~~~d~ii~~s~~~-----~~~~~~~~~~~~~~~vi~ngv~~~~~~--- 178 (394)
T 3okp_A 124 --WS----------M--LPGSRQSL---RKIGTEVDVLTYISQYT-----LRRFKSAFGSHPTFEHLPSGVDVKRFT--- 178 (394)
T ss_dssp --HT----------T--SHHHHHHH---HHHHHHCSEEEESCHHH-----HHHHHHHHCSSSEEEECCCCBCTTTSC---
T ss_pred --hh----------h--cchhhHHH---HHHHHhCCEEEEcCHHH-----HHHHHHhcCCCCCeEEecCCcCHHHcC---
Confidence 00 0 00011111 12234677788777432 12222222 23555555443322110
Q ss_pred CCCCCCCchHHHHHhhhccCCCCCeeEEEeccccc-CCHHHHHHHHHHHHh--CCCcEEEEEcCCCCccchhHHHHhc--
Q 048238 170 EPKNELSKPAWIRWLDRKLDEGSSVMYVAFGSQAE-ISAQQLKEIATGLEQ--SKVNFLWVIRKAESELGDGFEERVK-- 244 (395)
Q Consensus 170 ~~~~~~~~~~l~~~l~~~~~~~~~vv~vs~Gs~~~-~~~~~~~~l~~~l~~--~~~~~i~~~~~~~~~~~~~~~~~~~-- 244 (395)
. ........+.+.+... ++..+++..|+... ...+.+.+.+..+.. .+..++++ |.. .....+.+...
T Consensus 179 ~-~~~~~~~~~~~~~~~~---~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~-G~g--~~~~~l~~~~~~~ 251 (394)
T 3okp_A 179 P-ATPEDKSATRKKLGFT---DTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIV-GSG--RYESTLRRLATDV 251 (394)
T ss_dssp C-CCHHHHHHHHHHTTCC---TTCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEE-CCC--TTHHHHHHHTGGG
T ss_pred C-CCchhhHHHHHhcCCC---cCceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEE-cCc--hHHHHHHHHHhcc
Confidence 0 0000112233333222 34466777888743 233444444444433 35566554 432 12222332221
Q ss_pred CCCeEEecCCCHHH---HhcccCccceee-----------cCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceE
Q 048238 245 GRGLVVRDWVNQKE---ILWHESVQGFLS-----------HCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVA 310 (395)
Q Consensus 245 ~~~~~~~~~~pq~~---ll~~~~~~~~It-----------hgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g 310 (395)
..++.+.+++|+.+ +++.+++ +|. -|.-+++.||+++|+|+|+.+..+ ....+ +. |.|
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~ad~--~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~----~~e~i-~~-~~g 323 (394)
T 3okp_A 252 SQNVKFLGRLEYQDMINTLAAADI--FAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGG----APETV-TP-ATG 323 (394)
T ss_dssp GGGEEEEESCCHHHHHHHHHHCSE--EEECCCCBGGGTBCCSSCHHHHHHHHTTCCEEECSSTT----GGGGC-CT-TTE
T ss_pred cCeEEEcCCCCHHHHHHHHHhCCE--EEecCccccccccccccCcHHHHHHHcCCCEEEeCCCC----hHHHH-hc-CCc
Confidence 36899999997544 7889999 775 444578999999999999976532 22223 45 577
Q ss_pred EEeeccCCCCcCccCHHHHHHHHHHHhCCCh
Q 048238 311 LRVETCDGSVRGFVKWQGLEKTVRELMGGEK 341 (395)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~ 341 (395)
+.++. -+.+++.++|.++++|++
T Consensus 324 ~~~~~--------~d~~~l~~~i~~l~~~~~ 346 (394)
T 3okp_A 324 LVVEG--------SDVDKLSELLIELLDDPI 346 (394)
T ss_dssp EECCT--------TCHHHHHHHHHHHHTCHH
T ss_pred eEeCC--------CCHHHHHHHHHHHHhCHH
Confidence 77763 379999999999999874
No 31
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=98.65 E-value=1.1e-05 Score=78.48 Aligned_cols=148 Identities=11% Similarity=0.098 Sum_probs=91.5
Q ss_pred CCeeEEEeccccc-CCHHHHHHHHHHHHh-C---CCcEEEEEcCCC--CccchhHHHHh----cCCCeEEecCCCHH---
Q 048238 192 SSVMYVAFGSQAE-ISAQQLKEIATGLEQ-S---KVNFLWVIRKAE--SELGDGFEERV----KGRGLVVRDWVNQK--- 257 (395)
Q Consensus 192 ~~vv~vs~Gs~~~-~~~~~~~~l~~~l~~-~---~~~~i~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~pq~--- 257 (395)
...+++..|+... ...+.+.+.+..+.. . +..+++ +|... ....+.+.+.. ...++.+.+++++.
T Consensus 242 ~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i-~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~ 320 (438)
T 3c48_A 242 HTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVII-CGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELV 320 (438)
T ss_dssp SSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEE-ECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHH
T ss_pred CCcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEE-EeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHH
Confidence 4456677788754 233444444444433 2 344444 44310 01122233222 24689999999864
Q ss_pred HHhcccCccceeecC---C-chhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHH
Q 048238 258 EILWHESVQGFLSHC---G-WNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTV 333 (395)
Q Consensus 258 ~ll~~~~~~~~Ithg---G-~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i 333 (395)
.+++.+++ +|... | .++++||+++|+|+|+.+. ......+.+. +.|+.++. -+.+++.++|
T Consensus 321 ~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~--------~d~~~la~~i 385 (438)
T 3c48_A 321 AVYRAADI--VAVPSFNESFGLVAMEAQASGTPVIAARV----GGLPIAVAEG-ETGLLVDG--------HSPHAWADAL 385 (438)
T ss_dssp HHHHHCSE--EEECCSCCSSCHHHHHHHHTTCCEEEESC----TTHHHHSCBT-TTEEEESS--------CCHHHHHHHH
T ss_pred HHHHhCCE--EEECccccCCchHHHHHHHcCCCEEecCC----CChhHHhhCC-CcEEECCC--------CCHHHHHHHH
Confidence 58899998 77543 2 4689999999999999764 3345555444 67888763 3789999999
Q ss_pred HHHhCCCh-hHHHHHHHHHHHHH
Q 048238 334 RELMGGEK-GEKARTKVKELSEI 355 (395)
Q Consensus 334 ~~~l~~~~-~~~~~~~a~~l~~~ 355 (395)
.++++|++ .+.+.+++++..+.
T Consensus 386 ~~l~~~~~~~~~~~~~~~~~~~~ 408 (438)
T 3c48_A 386 ATLLDDDETRIRMGEDAVEHART 408 (438)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHh
Confidence 99998875 34555666555544
No 32
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=98.61 E-value=7.6e-07 Score=84.83 Aligned_cols=130 Identities=9% Similarity=0.164 Sum_probs=82.1
Q ss_pred CCeeEEEecccccCCHHHHHHHHHHHHh-----CCCcEEEEEcCCCCccchhHHHHhc-CCCeEEecCCCH---HHHhcc
Q 048238 192 SSVMYVAFGSQAEISAQQLKEIATGLEQ-----SKVNFLWVIRKAESELGDGFEERVK-GRGLVVRDWVNQ---KEILWH 262 (395)
Q Consensus 192 ~~vv~vs~Gs~~~~~~~~~~~l~~~l~~-----~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pq---~~ll~~ 262 (395)
+++++++.|...... +.+..+++++.. .+..+++..+. ...+...+.+... .+++.+.++++. ..+++.
T Consensus 205 ~~~vl~~~gr~~~~~-K~~~~li~a~~~l~~~~~~~~~i~~~g~-~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 282 (375)
T 3beo_A 205 NRLVLMTAHRRENLG-EPMRNMFRAIKRLVDKHEDVQVVYPVHM-NPVVRETANDILGDYGRIHLIEPLDVIDFHNVAAR 282 (375)
T ss_dssp SEEEEEECCCGGGTT-HHHHHHHHHHHHHHHHCTTEEEEEECCS-CHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHT
T ss_pred CCeEEEEecccccch-hHHHHHHHHHHHHHhhCCCeEEEEeCCC-CHHHHHHHHHHhhccCCEEEeCCCCHHHHHHHHHh
Confidence 466777777654321 234445555543 24555443222 1111122222222 268988787764 458899
Q ss_pred cCccceeecCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHhCCC
Q 048238 263 ESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGE 340 (395)
Q Consensus 263 ~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~ 340 (395)
+++ +|+.+| +.+.||+++|+|+|+.+..+.. ..+.+. |.|+.+.. +.+++.++|.++++|+
T Consensus 283 ad~--~v~~sg-~~~lEA~a~G~Pvi~~~~~~~~----~e~v~~-g~g~~v~~---------d~~~la~~i~~ll~~~ 343 (375)
T 3beo_A 283 SYL--MLTDSG-GVQEEAPSLGVPVLVLRDTTER----PEGIEA-GTLKLAGT---------DEETIFSLADELLSDK 343 (375)
T ss_dssp CSE--EEECCH-HHHHHHHHHTCCEEECSSCCSC----HHHHHT-TSEEECCS---------CHHHHHHHHHHHHHCH
T ss_pred CcE--EEECCC-ChHHHHHhcCCCEEEecCCCCC----ceeecC-CceEEcCC---------CHHHHHHHHHHHHhCh
Confidence 999 998874 4588999999999998543332 223466 88887752 7899999999999887
No 33
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=98.55 E-value=2.2e-05 Score=75.30 Aligned_cols=132 Identities=13% Similarity=0.119 Sum_probs=81.2
Q ss_pred CCeeEEEeccccc-CCHHHHHHHHHHHHh-CCCcEEEEEcCCCCccchhHHHHhc----CCCeEEecCCC-HHHHhcccC
Q 048238 192 SSVMYVAFGSQAE-ISAQQLKEIATGLEQ-SKVNFLWVIRKAESELGDGFEERVK----GRGLVVRDWVN-QKEILWHES 264 (395)
Q Consensus 192 ~~vv~vs~Gs~~~-~~~~~~~~l~~~l~~-~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p-q~~ll~~~~ 264 (395)
+..+++..|.... ...+.+.+.+..+.. .+..+++ +|.. .....+.+... ..++.+.++.. ...+++.++
T Consensus 210 ~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i-~G~g--~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~ad 286 (394)
T 2jjm_A 210 SEKILIHISNFRKVKRVQDVVQAFAKIVTEVDAKLLL-VGDG--PEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSD 286 (394)
T ss_dssp --CEEEEECCCCGGGTHHHHHHHHHHHHHSSCCEEEE-ECCC--TTHHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCS
T ss_pred CCeEEEEeeccccccCHHHHHHHHHHHHhhCCCEEEE-ECCc--hHHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCC
Confidence 3456667788754 233444444444433 3455544 4432 12223333222 35677777765 356999999
Q ss_pred cccee----ecCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHhCCC
Q 048238 265 VQGFL----SHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGE 340 (395)
Q Consensus 265 ~~~~I----thgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~ 340 (395)
+ +| .-|..+++.||+++|+|+|+.+..+ ....+.+. +.|+.++. -+.+++.++|.++++|+
T Consensus 287 v--~v~ps~~e~~~~~~~EAma~G~PvI~~~~~~----~~e~v~~~-~~g~~~~~--------~d~~~la~~i~~l~~~~ 351 (394)
T 2jjm_A 287 L--MLLLSEKESFGLVLLEAMACGVPCIGTRVGG----IPEVIQHG-DTGYLCEV--------GDTTGVADQAIQLLKDE 351 (394)
T ss_dssp E--EEECCSCCSCCHHHHHHHHTTCCEEEECCTT----STTTCCBT-TTEEEECT--------TCHHHHHHHHHHHHHCH
T ss_pred E--EEeccccCCCchHHHHHHhcCCCEEEecCCC----hHHHhhcC-CceEEeCC--------CCHHHHHHHHHHHHcCH
Confidence 9 77 4455678999999999999987532 22334334 57887764 37899999999999887
Q ss_pred h
Q 048238 341 K 341 (395)
Q Consensus 341 ~ 341 (395)
+
T Consensus 352 ~ 352 (394)
T 2jjm_A 352 E 352 (394)
T ss_dssp H
T ss_pred H
Confidence 4
No 34
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=98.47 E-value=6.3e-05 Score=72.08 Aligned_cols=129 Identities=14% Similarity=0.183 Sum_probs=85.4
Q ss_pred eeEEEeccc-cc-CCHHHHHHHHHHHHh--CCCcEEEEEcCCCCccchhHHHHhc--CCCeEEecCCCHH---HHhcccC
Q 048238 194 VMYVAFGSQ-AE-ISAQQLKEIATGLEQ--SKVNFLWVIRKAESELGDGFEERVK--GRGLVVRDWVNQK---EILWHES 264 (395)
Q Consensus 194 vv~vs~Gs~-~~-~~~~~~~~l~~~l~~--~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~pq~---~ll~~~~ 264 (395)
.+++..|+. .. ...+.+.+.+..+.+ .+..++++ |.. .. ..+.+... ..++.+.+++++. ++++.++
T Consensus 209 ~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~-G~~--~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad 284 (406)
T 2gek_A 209 RTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVEILIV-GRG--DE-DELREQAGDLAGHLRFLGQVDDATKASAMRSAD 284 (406)
T ss_dssp CEEEEESCTTSGGGCHHHHHHHHHHHHTTSTTCEEEEE-SCS--CH-HHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSS
T ss_pred eEEEEEeeeCccccCHHHHHHHHHHHHHHCCCeEEEEE-cCC--cH-HHHHHHHHhccCcEEEEecCCHHHHHHHHHHCC
Confidence 466777887 43 233444444444443 24555444 442 12 34444332 4789999999864 6899999
Q ss_pred ccceeec----CCc-hhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHhCC
Q 048238 265 VQGFLSH----CGW-NSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMGG 339 (395)
Q Consensus 265 ~~~~Ith----gG~-~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~ 339 (395)
+ +|.. .|+ +++.||+++|+|+|+.+. ......+.+. +.|+.++. -+.+++.++|.++++|
T Consensus 285 v--~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~--------~d~~~l~~~i~~l~~~ 349 (406)
T 2gek_A 285 V--YCAPHLGGESFGIVLVEAMAAGTAVVASDL----DAFRRVLADG-DAGRLVPV--------DDADGMAAALIGILED 349 (406)
T ss_dssp E--EEECCCSCCSSCHHHHHHHHHTCEEEECCC----HHHHHHHTTT-TSSEECCT--------TCHHHHHHHHHHHHHC
T ss_pred E--EEecCCCCCCCchHHHHHHHcCCCEEEecC----CcHHHHhcCC-CceEEeCC--------CCHHHHHHHHHHHHcC
Confidence 9 6644 333 589999999999999765 4455666445 67887763 3789999999999987
Q ss_pred Ch
Q 048238 340 EK 341 (395)
Q Consensus 340 ~~ 341 (395)
++
T Consensus 350 ~~ 351 (406)
T 2gek_A 350 DQ 351 (406)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 35
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=98.41 E-value=3.2e-06 Score=71.97 Aligned_cols=131 Identities=8% Similarity=0.072 Sum_probs=86.3
Q ss_pred CeeEEEecccccCCHHHHHHHHHHHHhC-CCcEEEEEcCCCC-ccchhHH--HHhcCCCeEEecCCCH---HHHhcccCc
Q 048238 193 SVMYVAFGSQAEISAQQLKEIATGLEQS-KVNFLWVIRKAES-ELGDGFE--ERVKGRGLVVRDWVNQ---KEILWHESV 265 (395)
Q Consensus 193 ~vv~vs~Gs~~~~~~~~~~~l~~~l~~~-~~~~i~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~pq---~~ll~~~~~ 265 (395)
..+++..|+... ...+..+++++... +.+++++-+.... .+..-.. +.....++.+.+|+++ ..+++.+++
T Consensus 23 ~~~i~~~G~~~~--~Kg~~~li~a~~~l~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adi 100 (177)
T 2f9f_A 23 GDFWLSVNRIYP--EKRIELQLEVFKKLQDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSRCKG 100 (177)
T ss_dssp CSCEEEECCSSG--GGTHHHHHHHHHHCTTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHHCSE
T ss_pred CCEEEEEecccc--ccCHHHHHHHHHhCCCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHhCCE
Confidence 345567788753 23345566666664 5676665443221 1111111 1122468999999997 568999998
Q ss_pred cceee---cCCc-hhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHhCCCh
Q 048238 266 QGFLS---HCGW-NSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGEK 341 (395)
Q Consensus 266 ~~~It---hgG~-~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~ 341 (395)
+|. +.|+ .+++||+++|+|+|+... ..+...+.+. +.|+.+ . .+.+++.++|.++++|++
T Consensus 101 --~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~e~i~~~-~~g~~~-~--------~d~~~l~~~i~~l~~~~~ 164 (177)
T 2f9f_A 101 --LLCTAKDEDFGLTPIEAMASGKPVIAVNE----GGFKETVINE-KTGYLV-N--------ADVNEIIDAMKKVSKNPD 164 (177)
T ss_dssp --EEECCSSCCSCHHHHHHHHTTCCEEEESS----HHHHHHCCBT-TTEEEE-C--------SCHHHHHHHHHHHHHCTT
T ss_pred --EEeCCCcCCCChHHHHHHHcCCcEEEeCC----CCHHHHhcCC-CccEEe-C--------CCHHHHHHHHHHHHhCHH
Confidence 665 3344 489999999999999753 4555666445 678777 4 278999999999998774
No 36
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=98.33 E-value=0.00022 Score=70.61 Aligned_cols=92 Identities=14% Similarity=0.108 Sum_probs=65.5
Q ss_pred CCCeEEecCCCHH---HHhccc----CccceeecC---Cc-hhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEe
Q 048238 245 GRGLVVRDWVNQK---EILWHE----SVQGFLSHC---GW-NSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRV 313 (395)
Q Consensus 245 ~~~~~~~~~~pq~---~ll~~~----~~~~~Ithg---G~-~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~ 313 (395)
..++.+.+++|+. .+++.+ ++ +|.-. |+ .+++||+++|+|+|+... ......+.+. ..|+.+
T Consensus 334 ~~~V~~~G~v~~~~~~~~~~~a~~~~dv--~v~pS~~Eg~~~~~lEAma~G~PvI~s~~----~g~~e~v~~~-~~g~l~ 406 (499)
T 2r60_A 334 RGKVSMFPLNSQQELAGCYAYLASKGSV--FALTSFYEPFGLAPVEAMASGLPAVVTRN----GGPAEILDGG-KYGVLV 406 (499)
T ss_dssp BTTEEEEECCSHHHHHHHHHHHHHTTCE--EEECCSCBCCCSHHHHHHHTTCCEEEESS----BHHHHHTGGG-TSSEEE
T ss_pred CceEEECCCCCHHHHHHHHHhcCcCCCE--EEECcccCCCCcHHHHHHHcCCCEEEecC----CCHHHHhcCC-ceEEEe
Confidence 4679999999754 488888 88 66432 33 589999999999999853 2344555444 578888
Q ss_pred eccCCCCcCccCHHHHHHHHHHHhCCCh-hHHHHHHHHH
Q 048238 314 ETCDGSVRGFVKWQGLEKTVRELMGGEK-GEKARTKVKE 351 (395)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~ 351 (395)
+. -+.+++.++|.++++|++ .+.+.+++++
T Consensus 407 ~~--------~d~~~la~~i~~ll~~~~~~~~~~~~a~~ 437 (499)
T 2r60_A 407 DP--------EDPEDIARGLLKAFESEETWSAYQEKGKQ 437 (499)
T ss_dssp CT--------TCHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CC--------CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 64 378999999999999874 2334344433
No 37
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=98.32 E-value=0.00015 Score=70.13 Aligned_cols=143 Identities=16% Similarity=0.160 Sum_probs=90.0
Q ss_pred eeEEEecccc-c-CCHHHHHHHHHHHHh----CCCcEEEEEcCCCCccchhHHHHh--cCCCeEEecCCCHH---HHhcc
Q 048238 194 VMYVAFGSQA-E-ISAQQLKEIATGLEQ----SKVNFLWVIRKAESELGDGFEERV--KGRGLVVRDWVNQK---EILWH 262 (395)
Q Consensus 194 vv~vs~Gs~~-~-~~~~~~~~l~~~l~~----~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~pq~---~ll~~ 262 (395)
.+++..|+.. . ...+.+.+.+..+.. .+.++++ +|.........+.+.. .+.++.+.+|+++. ++++.
T Consensus 252 ~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i-~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 330 (439)
T 3fro_A 252 VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFII-IGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGS 330 (439)
T ss_dssp EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEE-ECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTT
T ss_pred cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEE-EcCCChhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHHHH
Confidence 6777888886 4 344555555555555 3445444 4432111112222221 23456677889875 47889
Q ss_pred cCccceeec----CCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHhC
Q 048238 263 ESVQGFLSH----CGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMG 338 (395)
Q Consensus 263 ~~~~~~Ith----gG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~ 338 (395)
+++ +|.- |--++++||+++|+|+|+... ......+ +. |.|+.++. .+.+++.++|.++++
T Consensus 331 adv--~v~ps~~e~~~~~~~EAma~G~Pvi~s~~----~~~~e~~-~~-~~g~~~~~--------~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 331 VDF--VIIPSYFEPFGLVALEAMCLGAIPIASAV----GGLRDII-TN-ETGILVKA--------GDPGELANAILKALE 394 (439)
T ss_dssp CSE--EEECBSCCSSCHHHHHHHHTTCEEEEESS----THHHHHC-CT-TTCEEECT--------TCHHHHHHHHHHHHH
T ss_pred CCE--EEeCCCCCCccHHHHHHHHCCCCeEEcCC----CCcceeE-Ec-CceEEeCC--------CCHHHHHHHHHHHHh
Confidence 998 6643 223689999999999999754 2344444 56 78888864 478999999999998
Q ss_pred -CCh-hHHHHHHHHHHH
Q 048238 339 -GEK-GEKARTKVKELS 353 (395)
Q Consensus 339 -~~~-~~~~~~~a~~l~ 353 (395)
+++ .+.+.+++++..
T Consensus 395 ~~~~~~~~~~~~~~~~~ 411 (439)
T 3fro_A 395 LSRSDLSKFRENCKKRA 411 (439)
T ss_dssp HTTTTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 664 345555555544
No 38
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=98.27 E-value=1.8e-05 Score=74.32 Aligned_cols=122 Identities=17% Similarity=0.134 Sum_probs=80.3
Q ss_pred eEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHH---HhcCCCeEEecCCCHH---HHhcccCccce
Q 048238 195 MYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEE---RVKGRGLVVRDWVNQK---EILWHESVQGF 268 (395)
Q Consensus 195 v~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~pq~---~ll~~~~~~~~ 268 (395)
+++..|+... .+....+++++...+.+++++ |.. .....+.+ +. +.++.+.+|+++. ++++.+++ +
T Consensus 164 ~i~~vG~~~~--~Kg~~~li~a~~~~~~~l~i~-G~g--~~~~~l~~~~~~~-~~~v~~~g~~~~~~l~~~~~~adv--~ 235 (342)
T 2iuy_A 164 FLLFMGRVSP--HKGALEAAAFAHACGRRLVLA-GPA--WEPEYFDEITRRY-GSTVEPIGEVGGERRLDLLASAHA--V 235 (342)
T ss_dssp CEEEESCCCG--GGTHHHHHHHHHHHTCCEEEE-SCC--CCHHHHHHHHHHH-TTTEEECCCCCHHHHHHHHHHCSE--E
T ss_pred EEEEEecccc--ccCHHHHHHHHHhcCcEEEEE-eCc--ccHHHHHHHHHHh-CCCEEEeccCCHHHHHHHHHhCCE--E
Confidence 4555677653 233445556665557776555 432 12222222 22 3799999999965 68999999 6
Q ss_pred ee--c-----------CC-chhHHHHHhcCCcEEeccCCCchhHHHHHHhh--hhceEEEeeccCCCCcCccCHHHHHHH
Q 048238 269 LS--H-----------CG-WNSALESICAGVPILAWPIMADQPLNARMVTE--EIKVALRVETCDGSVRGFVKWQGLEKT 332 (395)
Q Consensus 269 It--h-----------gG-~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~--~lg~g~~~~~~~~~~~~~~~~~~l~~~ 332 (395)
|. + -| -++++||+++|+|+|+.... .+...+.+ . +.|+.++ . +.+++.++
T Consensus 236 v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~----~~~e~~~~~~~-~~g~~~~--------~-d~~~l~~~ 301 (342)
T 2iuy_A 236 LAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNG----CLAEIVPSVGE-VVGYGTD--------F-APDEARRT 301 (342)
T ss_dssp EECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTT----THHHHGGGGEE-ECCSSSC--------C-CHHHHHHH
T ss_pred EECCcccccccccccccCccHHHHHHHhcCCCEEEcCCC----ChHHHhcccCC-CceEEcC--------C-CHHHHHHH
Confidence 63 2 23 36899999999999998753 35555655 4 5666554 4 89999999
Q ss_pred HHHHhC
Q 048238 333 VRELMG 338 (395)
Q Consensus 333 i~~~l~ 338 (395)
|.++++
T Consensus 302 i~~l~~ 307 (342)
T 2iuy_A 302 LAGLPA 307 (342)
T ss_dssp HHTSCC
T ss_pred HHHHHH
Confidence 999886
No 39
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=98.16 E-value=0.00019 Score=69.25 Aligned_cols=133 Identities=14% Similarity=0.065 Sum_probs=82.6
Q ss_pred CCeeEEEecccccC-CHHHHHHHHHHHHh--CCCcEEEEEcCCCC--ccchhHH---HHh-cCCCeEEecCCC---H---
Q 048238 192 SSVMYVAFGSQAEI-SAQQLKEIATGLEQ--SKVNFLWVIRKAES--ELGDGFE---ERV-KGRGLVVRDWVN---Q--- 256 (395)
Q Consensus 192 ~~vv~vs~Gs~~~~-~~~~~~~l~~~l~~--~~~~~i~~~~~~~~--~~~~~~~---~~~-~~~~~~~~~~~p---q--- 256 (395)
+..+++..|..... ..+.+.+.+..+.. .+.+++++-+.... .....+. +.. ...++.+.+|++ +
T Consensus 230 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~ 309 (416)
T 2x6q_A 230 EKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREV 309 (416)
T ss_dssp TSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHH
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHH
Confidence 34556667877542 33444444444433 35666655443210 0011121 122 246899988765 2
Q ss_pred HHHhcccCccceeecC----CchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHH
Q 048238 257 KEILWHESVQGFLSHC----GWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKT 332 (395)
Q Consensus 257 ~~ll~~~~~~~~Ithg----G~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~ 332 (395)
.++++.+++ +|... ..+++.||+++|+|+|+.+. ..+...+.+. +.|+.++ +.+++.++
T Consensus 310 ~~~~~~ad~--~v~ps~~E~~~~~~lEAma~G~PvI~~~~----~g~~e~i~~~-~~g~l~~----------d~~~la~~ 372 (416)
T 2x6q_A 310 NAFQRASDV--ILQMSIREGFGLTVTEAMWKGKPVIGRAV----GGIKFQIVDG-ETGFLVR----------DANEAVEV 372 (416)
T ss_dssp HHHHHHCSE--EEECCSSCSSCHHHHHHHHTTCCEEEESC----HHHHHHCCBT-TTEEEES----------SHHHHHHH
T ss_pred HHHHHhCCE--EEECCCcCCCccHHHHHHHcCCCEEEccC----CCChhheecC-CCeEEEC----------CHHHHHHH
Confidence 358889998 77654 34689999999999999764 3455556444 6777663 68899999
Q ss_pred HHHHhCCCh
Q 048238 333 VRELMGGEK 341 (395)
Q Consensus 333 i~~~l~~~~ 341 (395)
|.++++|++
T Consensus 373 i~~ll~~~~ 381 (416)
T 2x6q_A 373 VLYLLKHPE 381 (416)
T ss_dssp HHHHHHCHH
T ss_pred HHHHHhCHH
Confidence 999998874
No 40
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=98.13 E-value=0.00047 Score=66.28 Aligned_cols=134 Identities=9% Similarity=0.072 Sum_probs=78.5
Q ss_pred CCeeEEEeccccc-CCHHHHHHHHHHHH-h-CCCcEEEEEcCCCCc---cchhHHHH---hcCCC--------eEEecCC
Q 048238 192 SSVMYVAFGSQAE-ISAQQLKEIATGLE-Q-SKVNFLWVIRKAESE---LGDGFEER---VKGRG--------LVVRDWV 254 (395)
Q Consensus 192 ~~vv~vs~Gs~~~-~~~~~~~~l~~~l~-~-~~~~~i~~~~~~~~~---~~~~~~~~---~~~~~--------~~~~~~~ 254 (395)
+..+++..|.... ...+.+.+.+..+. . .+.+++++-+..... +...+.+. ..-.+ +.+.+|+
T Consensus 183 ~~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~ 262 (413)
T 3oy2_A 183 DDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVL 262 (413)
T ss_dssp TSEEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCC
T ss_pred CceEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcC
Confidence 4567777888643 22343333333332 2 456776665443110 11223221 22222 6777999
Q ss_pred CHH---HHhcccCccceeec----CCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhce---------------EE-
Q 048238 255 NQK---EILWHESVQGFLSH----CGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKV---------------AL- 311 (395)
Q Consensus 255 pq~---~ll~~~~~~~~Ith----gG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~---------------g~- 311 (395)
++. ++++.+++ +|.- |...++.||+++|+|+|+... ......+.+. .. |+
T Consensus 263 ~~~~~~~~~~~adv--~v~pS~~E~~~~~~lEAma~G~PvI~s~~----~g~~e~v~~~-~~~~i~~~~~~~~~~~~G~~ 335 (413)
T 3oy2_A 263 TDERVDMMYNACDV--IVNCSSGEGFGLCSAEGAVLGKPLIISAV----GGADDYFSGD-CVYKIKPSAWISVDDRDGIG 335 (413)
T ss_dssp CHHHHHHHHHHCSE--EEECCSCCSSCHHHHHHHTTTCCEEEECC----HHHHHHSCTT-TSEEECCCEEEECTTTCSSC
T ss_pred CHHHHHHHHHhCCE--EEeCCCcCCCCcHHHHHHHcCCCEEEcCC----CChHHHHccC-cccccccccccccccccCcc
Confidence 844 47889998 6642 223589999999999999653 2344444222 11 54
Q ss_pred -EeeccCCCCcCccCHHHHHHHHHHHhCCCh
Q 048238 312 -RVETCDGSVRGFVKWQGLEKTVRELMGGEK 341 (395)
Q Consensus 312 -~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~ 341 (395)
.+.. .+.+++.++| ++++|++
T Consensus 336 gl~~~--------~d~~~la~~i-~l~~~~~ 357 (413)
T 3oy2_A 336 GIEGI--------IDVDDLVEAF-TFFKDEK 357 (413)
T ss_dssp CEEEE--------CCHHHHHHHH-HHTTSHH
T ss_pred eeeCC--------CCHHHHHHHH-HHhcCHH
Confidence 5543 3899999999 9998873
No 41
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=98.12 E-value=0.00043 Score=66.20 Aligned_cols=96 Identities=20% Similarity=0.257 Sum_probs=69.0
Q ss_pred CeEEecCCC-HHHHhcccCccceeec-----CCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCC
Q 048238 247 GLVVRDWVN-QKEILWHESVQGFLSH-----CGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSV 320 (395)
Q Consensus 247 ~~~~~~~~p-q~~ll~~~~~~~~Ith-----gG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~ 320 (395)
++.+.++.. -..+++.+++ ++.- +|..+++||+++|+|+|+-|..++.......+.+. |.++.+.
T Consensus 261 ~v~~~~~~~dl~~~y~~aDv--~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~~~~-G~l~~~~------ 331 (374)
T 2xci_A 261 DVILVDRFGILKELYPVGKI--AIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKE-GAGFEVK------ 331 (374)
T ss_dssp SEEECCSSSCHHHHGGGEEE--EEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHHHHHHHHHT-TCEEECC------
T ss_pred cEEEECCHHHHHHHHHhCCE--EEECCcccCCCCcCHHHHHHhCCCEEECCCccChHHHHHHHHHC-CCEEEeC------
Confidence 455555543 5669999998 6542 23478999999999999887776666656555455 7776553
Q ss_pred cCccCHHHHHHHHHHHhCCCh-hHHHHHHHHHHHHHH
Q 048238 321 RGFVKWQGLEKTVRELMGGEK-GEKARTKVKELSEIA 356 (395)
Q Consensus 321 ~~~~~~~~l~~~i~~~l~~~~-~~~~~~~a~~l~~~~ 356 (395)
+.+++.++|.++++| + .+.+.+++++..+.-
T Consensus 332 ----d~~~La~ai~~ll~d-~~r~~mg~~ar~~~~~~ 363 (374)
T 2xci_A 332 ----NETELVTKLTELLSV-KKEIKVEEKSREIKGCY 363 (374)
T ss_dssp ----SHHHHHHHHHHHHHS-CCCCCHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhc
Confidence 679999999999987 5 456777777665543
No 42
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=97.91 E-value=5.5e-05 Score=71.61 Aligned_cols=144 Identities=13% Similarity=0.167 Sum_probs=92.6
Q ss_pred CCCeeEEEecccccCCHHHHHHHHHHHHhC------CCcEEEEEcCCCCccchhHHHHh---c-CCCeEEecCCC-HHHH
Q 048238 191 GSSVMYVAFGSQAEISAQQLKEIATGLEQS------KVNFLWVIRKAESELGDGFEERV---K-GRGLVVRDWVN-QKEI 259 (395)
Q Consensus 191 ~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~------~~~~i~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~p-q~~l 259 (395)
++..+++..|+.... .....+++++... +..+ +.+|... .+.+.+.. . ..++.+.++.. ..++
T Consensus 194 ~~~~~i~~~G~~~~~--K~~~~li~a~~~l~~~~~~~~~l-~i~G~g~---~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 267 (374)
T 2iw1_A 194 EQQNLLLQVGSDFGR--KGVDRSIEALASLPESLRHNTLL-FVVGQDK---PRKFEALAEKLGVRSNVHFFSGRNDVSEL 267 (374)
T ss_dssp TTCEEEEEECSCTTT--TTHHHHHHHHHTSCHHHHHTEEE-EEESSSC---CHHHHHHHHHHTCGGGEEEESCCSCHHHH
T ss_pred CCCeEEEEeccchhh--cCHHHHHHHHHHhHhccCCceEE-EEEcCCC---HHHHHHHHHHcCCCCcEEECCCcccHHHH
Confidence 345667777876532 3344455566553 2344 4455431 12333222 1 46788888865 3569
Q ss_pred hcccCccceee----cCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHH
Q 048238 260 LWHESVQGFLS----HCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRE 335 (395)
Q Consensus 260 l~~~~~~~~It----hgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~ 335 (395)
++.+++ +|. -|..+++.||+++|+|+|+.+.. .+...+.+. +.|+.+. ...+.+++.++|.+
T Consensus 268 ~~~ad~--~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~-------~~~~~~~l~~~i~~ 333 (374)
T 2iw1_A 268 MAAADL--LLHPAYQEAAGIVLLEAITAGLPVLTTAVC----GYAHYIADA-NCGTVIA-------EPFSQEQLNEVLRK 333 (374)
T ss_dssp HHHCSE--EEECCSCCSSCHHHHHHHHHTCCEEEETTS----TTTHHHHHH-TCEEEEC-------SSCCHHHHHHHHHH
T ss_pred HHhcCE--EEeccccCCcccHHHHHHHCCCCEEEecCC----CchhhhccC-CceEEeC-------CCCCHHHHHHHHHH
Confidence 999999 775 34567899999999999998753 344556566 8898886 23489999999999
Q ss_pred HhCCCh-hHHHHHHHHHHHH
Q 048238 336 LMGGEK-GEKARTKVKELSE 354 (395)
Q Consensus 336 ~l~~~~-~~~~~~~a~~l~~ 354 (395)
+++|++ .+.+.+++++..+
T Consensus 334 l~~~~~~~~~~~~~~~~~~~ 353 (374)
T 2iw1_A 334 ALTQSPLRMAWAENARHYAD 353 (374)
T ss_dssp HHHCHHHHHHHHHHHHHHHH
T ss_pred HHcChHHHHHHHHHHHHHHH
Confidence 998874 3344455544443
No 43
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=97.84 E-value=0.0001 Score=61.32 Aligned_cols=140 Identities=14% Similarity=0.168 Sum_probs=81.2
Q ss_pred CeeEEEecccccCCHHHHHHHHHHHHhC----CCcEEEEEcCCCCccchhHHHHh--cCCCeEEecCCCHH---HHhccc
Q 048238 193 SVMYVAFGSQAEISAQQLKEIATGLEQS----KVNFLWVIRKAESELGDGFEERV--KGRGLVVRDWVNQK---EILWHE 263 (395)
Q Consensus 193 ~vv~vs~Gs~~~~~~~~~~~l~~~l~~~----~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~pq~---~ll~~~ 263 (395)
+.+++..|+.... ..+..+++++... +..+++ +|.. .....+.+.. .+.++.+ +|+|+. .+++.+
T Consensus 2 ~~~i~~~G~~~~~--Kg~~~li~a~~~l~~~~~~~l~i-~G~g--~~~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~a 75 (166)
T 3qhp_A 2 PFKIAMVGRYSNE--KNQSVLIKAVALSKYKQDIVLLL-KGKG--PDEKKIKLLAQKLGVKAEF-GFVNSNELLEILKTC 75 (166)
T ss_dssp CEEEEEESCCSTT--TTHHHHHHHHHTCTTGGGEEEEE-ECCS--TTHHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTTC
T ss_pred ceEEEEEeccchh--cCHHHHHHHHHHhccCCCeEEEE-EeCC--ccHHHHHHHHHHcCCeEEE-eecCHHHHHHHHHhC
Confidence 5677778887542 3344455555543 334443 4432 1222333222 1237788 999864 488899
Q ss_pred Cccceeec----CCchhHHHHHhcCC-cEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHhC
Q 048238 264 SVQGFLSH----CGWNSALESICAGV-PILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMG 338 (395)
Q Consensus 264 ~~~~~Ith----gG~~s~~Ea~~~Gv-P~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~ 338 (395)
++ +|.- |...++.||+++|+ |+|+....+ .....+.+. +. .+. .-+.+++.++|.++++
T Consensus 76 dv--~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~---~~~~~~~~~-~~--~~~--------~~~~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 76 TL--YVHAANVESEAIACLEAISVGIVPVIANSPLS---ATRQFALDE-RS--LFE--------PNNAKDLSAKIDWWLE 139 (166)
T ss_dssp SE--EEECCCSCCCCHHHHHHHHTTCCEEEECCTTC---GGGGGCSSG-GG--EEC--------TTCHHHHHHHHHHHHH
T ss_pred CE--EEECCcccCccHHHHHHHhcCCCcEEeeCCCC---chhhhccCC-ce--EEc--------CCCHHHHHHHHHHHHh
Confidence 98 7652 23468999999996 999943211 111122122 33 233 2489999999999998
Q ss_pred CCh-hHHHHHHHHHHHH
Q 048238 339 GEK-GEKARTKVKELSE 354 (395)
Q Consensus 339 ~~~-~~~~~~~a~~l~~ 354 (395)
|++ .+.+.+++++..+
T Consensus 140 ~~~~~~~~~~~~~~~~~ 156 (166)
T 3qhp_A 140 NKLERERMQNEYAKSAL 156 (166)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 874 3445555555443
No 44
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=97.73 E-value=0.00052 Score=58.82 Aligned_cols=140 Identities=14% Similarity=0.162 Sum_probs=86.5
Q ss_pred eEEEecccc-cC-CHHHHHHHHHHHH--h--CCCcEEEEEcCCCCccchhHHHHhc-CCCeEE-ecCCCHH---HHhccc
Q 048238 195 MYVAFGSQA-EI-SAQQLKEIATGLE--Q--SKVNFLWVIRKAESELGDGFEERVK-GRGLVV-RDWVNQK---EILWHE 263 (395)
Q Consensus 195 v~vs~Gs~~-~~-~~~~~~~l~~~l~--~--~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~pq~---~ll~~~ 263 (395)
+++..|+.. .. ..+.+.+.+..+. . .+.+++++ |.........+.+... ..++.+ .+++++. .+++.+
T Consensus 38 ~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~-G~~~~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~a 116 (200)
T 2bfw_A 38 TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIII-GKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSV 116 (200)
T ss_dssp EEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEE-CCBCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTTC
T ss_pred EEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEE-CCCChHHHHHHHHHHHhcCCEEEEeccCCHHHHHHHHHHC
Confidence 666778876 43 3455555555553 2 23454444 4321002223333221 128999 9999843 588999
Q ss_pred CccceeecC---C-chhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHhC-
Q 048238 264 SVQGFLSHC---G-WNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMG- 338 (395)
Q Consensus 264 ~~~~~Ithg---G-~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~- 338 (395)
++ +|... | -.+++||+++|+|+|+... ......+ +. +.|+.++. -+.+++.++|.++++
T Consensus 117 d~--~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~----~~~~e~~-~~-~~g~~~~~--------~~~~~l~~~i~~l~~~ 180 (200)
T 2bfw_A 117 DF--VIIPSYFEPFGLVALEAMCLGAIPIASAV----GGLRDII-TN-ETGILVKA--------GDPGELANAILKALEL 180 (200)
T ss_dssp SE--EEECCSCCSSCHHHHHHHHTTCEEEEESC----HHHHHHC-CT-TTCEEECT--------TCHHHHHHHHHHHHHC
T ss_pred CE--EEECCCCCCccHHHHHHHHCCCCEEEeCC----CChHHHc-CC-CceEEecC--------CCHHHHHHHHHHHHhc
Confidence 98 66533 3 3688999999999998754 3445555 55 77887764 378999999999998
Q ss_pred CCh-hHHHHHHHHH
Q 048238 339 GEK-GEKARTKVKE 351 (395)
Q Consensus 339 ~~~-~~~~~~~a~~ 351 (395)
|++ .+.+.+++++
T Consensus 181 ~~~~~~~~~~~a~~ 194 (200)
T 2bfw_A 181 SRSDLSKFRENCKK 194 (200)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 874 2334444443
No 45
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.56 E-value=0.002 Score=64.83 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=59.5
Q ss_pred CCeEEecCCCHH---HHhcccCccceee---cCCchhHHHHHhcCCcEEeccCCCchh-HHHHHHhhhhceEEEeeccCC
Q 048238 246 RGLVVRDWVNQK---EILWHESVQGFLS---HCGWNSALESICAGVPILAWPIMADQP-LNARMVTEEIKVALRVETCDG 318 (395)
Q Consensus 246 ~~~~~~~~~pq~---~ll~~~~~~~~It---hgG~~s~~Ea~~~GvP~i~~P~~~DQ~-~na~~v~~~lg~g~~~~~~~~ 318 (395)
.++.+.+++++. .+++.+|+ ||. .|+.++++||+++|+|+|+.|-..-.. ..+..+.+. |+...+.
T Consensus 434 ~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~-g~~e~v~---- 506 (568)
T 2vsy_A 434 QRLVFMPKLPHPQYLARYRHADL--FLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHL-GLDEMNV---- 506 (568)
T ss_dssp GGEEEECCCCHHHHHHHGGGCSE--EECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHH-TCGGGBC----
T ss_pred hHEEeeCCCCHHHHHHHHhcCCE--EeeCCCCCCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHC-CChhhhc----
Confidence 679999999843 57899998 762 255678999999999999977531111 123344343 6655443
Q ss_pred CCcCccCHHHHHHHHHHHhCCCh
Q 048238 319 SVRGFVKWQGLEKTVRELMGGEK 341 (395)
Q Consensus 319 ~~~~~~~~~~l~~~i~~~l~~~~ 341 (395)
. +.+++.+++.++++|++
T Consensus 507 ---~--~~~~la~~i~~l~~~~~ 524 (568)
T 2vsy_A 507 ---A--DDAAFVAKAVALASDPA 524 (568)
T ss_dssp ---S--SHHHHHHHHHHHHHCHH
T ss_pred ---C--CHHHHHHHHHHHhcCHH
Confidence 2 78999999999998874
No 46
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=97.50 E-value=0.0014 Score=66.02 Aligned_cols=138 Identities=8% Similarity=0.057 Sum_probs=88.7
Q ss_pred CCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEE--EcCCCC---ccchhHHHHhcCCCeEEecCCCHHH---Hhccc
Q 048238 192 SSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWV--IRKAES---ELGDGFEERVKGRGLVVRDWVNQKE---ILWHE 263 (395)
Q Consensus 192 ~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~pq~~---ll~~~ 263 (395)
..++|.+|+......++.+....+-+.+.+..++|. .+.... .+-..+.+.--.+.+.+.+.+|..+ .+..+
T Consensus 440 G~v~Fg~fn~~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~~~~~~~~~~~~GI~~Rv~F~g~~p~~e~la~y~~a 519 (631)
T 3q3e_A 440 EVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGITHPYVERFIKSYLGDSATAHPHSPYHQYLRILHNC 519 (631)
T ss_dssp SEEEEEEEECSTTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGGGHHHHHHHHHHHHGGGEEEECCCCHHHHHHHHHTC
T ss_pred CeEEEEECCccccCCHHHHHHHHHHHHhCCCcEEEEEecCCCchhhHHHHHHHHHcCCCccEEEcCCCCHHHHHHHHhcC
Confidence 368888888888788899998888888887777764 443211 1111111111125678889998765 44788
Q ss_pred Cccceee---cCCchhHHHHHhcCCcEEeccCCCchhHH-HHHHhhhhceEEE-eeccCCCCcCccCHHHHHHHHHHHhC
Q 048238 264 SVQGFLS---HCGWNSALESICAGVPILAWPIMADQPLN-ARMVTEEIKVALR-VETCDGSVRGFVKWQGLEKTVRELMG 338 (395)
Q Consensus 264 ~~~~~It---hgG~~s~~Ea~~~GvP~i~~P~~~DQ~~n-a~~v~~~lg~g~~-~~~~~~~~~~~~~~~~l~~~i~~~l~ 338 (395)
|+ |+. .+|.+|++||+++|||+|+.+-..=.-.. +..+... |+.-. +.. +.++..+...++.+
T Consensus 520 DI--fLDpfpy~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~-GLpE~LIA~---------d~eeYv~~Av~La~ 587 (631)
T 3q3e_A 520 DM--MVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRL-GLPEWLIAN---------TVDEYVERAVRLAE 587 (631)
T ss_dssp SE--EECCSSSCCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHT-TCCGGGEES---------SHHHHHHHHHHHHH
T ss_pred cE--EEeCCcccCChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhc-CCCcceecC---------CHHHHHHHHHHHhC
Confidence 88 654 37889999999999999998753211122 2233223 65532 332 57777777778888
Q ss_pred CCh
Q 048238 339 GEK 341 (395)
Q Consensus 339 ~~~ 341 (395)
|++
T Consensus 588 D~~ 590 (631)
T 3q3e_A 588 NHQ 590 (631)
T ss_dssp CHH
T ss_pred CHH
Confidence 874
No 47
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=97.45 E-value=0.0064 Score=63.79 Aligned_cols=82 Identities=11% Similarity=0.138 Sum_probs=55.6
Q ss_pred CCCeEEecCCC----HHHH---hc-ccCccceeec----CCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEE
Q 048238 245 GRGLVVRDWVN----QKEI---LW-HESVQGFLSH----CGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALR 312 (395)
Q Consensus 245 ~~~~~~~~~~p----q~~l---l~-~~~~~~~Ith----gG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~ 312 (395)
..++.+.++.+ +.++ ++ .+++ ||.- +-..++.||+++|+|+|+.. .......+.+. ..|+.
T Consensus 639 ~~~V~flG~~~~~v~~~eL~~~~~~aaDv--fV~PS~~EgfglvllEAMA~G~PVIasd----~GG~~EiV~dg-~~Gll 711 (816)
T 3s28_A 639 NGQFRWISSQMDRVRNGELYRYICDTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATC----KGGPAEIIVHG-KSGFH 711 (816)
T ss_dssp BBBEEEECCCCCHHHHHHHHHHHHHTTCE--EEECCSCBSSCHHHHHHHHTTCCEEEES----SBTHHHHCCBT-TTBEE
T ss_pred CCcEEEccCccccCCHHHHHHHHHhcCeE--EEECCCccCccHHHHHHHHcCCCEEEeC----CCChHHHHccC-CcEEE
Confidence 36788887554 3443 44 4567 6643 23468999999999999974 33445555455 67888
Q ss_pred eeccCCCCcCccCHHHHHHHHHHHh----CCCh
Q 048238 313 VETCDGSVRGFVKWQGLEKTVRELM----GGEK 341 (395)
Q Consensus 313 ~~~~~~~~~~~~~~~~l~~~i~~~l----~~~~ 341 (395)
++. .+.++++++|.+++ .|++
T Consensus 712 v~p--------~D~e~LA~aI~~lL~~Ll~d~~ 736 (816)
T 3s28_A 712 IDP--------YHGDQAADTLADFFTKCKEDPS 736 (816)
T ss_dssp ECT--------TSHHHHHHHHHHHHHHHHHCTH
T ss_pred eCC--------CCHHHHHHHHHHHHHHhccCHH
Confidence 874 37889999997766 6764
No 48
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.45 E-value=0.0018 Score=67.36 Aligned_cols=138 Identities=15% Similarity=0.200 Sum_probs=91.6
Q ss_pred CCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHH-----hcCCCeEEecCCCHHH---Hhcc
Q 048238 191 GSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEER-----VKGRGLVVRDWVNQKE---ILWH 262 (395)
Q Consensus 191 ~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~pq~~---ll~~ 262 (395)
+..++|.+|-.....+++.+..-.+-|++.+..++|....... ....+.+. +....+++.+.+|..+ .+..
T Consensus 521 ~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~-~~~~l~~~~~~~gi~~~r~~f~~~~~~~~~l~~~~~ 599 (723)
T 4gyw_A 521 EDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAV-GEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQL 599 (723)
T ss_dssp TTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTGG-GHHHHHHHHHHTTCCGGGEEEEECCCHHHHHHHGGG
T ss_pred CCCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcHH-HHHHHHHHHHhcCCCcCeEEECCCCCHHHHHHHhCC
Confidence 4578999998888899999999999999999999998876411 11122222 1245688888888655 4456
Q ss_pred cCccceee---cCCchhHHHHHhcCCcEEeccCCCc-hhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHhC
Q 048238 263 ESVQGFLS---HCGWNSALESICAGVPILAWPIMAD-QPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMG 338 (395)
Q Consensus 263 ~~~~~~It---hgG~~s~~Ea~~~GvP~i~~P~~~D-Q~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~ 338 (395)
+|+ ++. .+|++|++||++.|||+|.+|-..= ...-+..+ ..+|+.-.+-. +.++-.+..-++-+
T Consensus 600 ~Di--~LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l-~~~gl~e~ia~---------~~~~Y~~~a~~la~ 667 (723)
T 4gyw_A 600 ADV--CLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQL-TCLGCLELIAK---------NRQEYEDIAVKLGT 667 (723)
T ss_dssp CSE--EECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHH-HHHTCGGGBCS---------SHHHHHHHHHHHHH
T ss_pred CeE--EeCCCCcCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHH-HHcCCcccccC---------CHHHHHHHHHHHhc
Confidence 777 765 8899999999999999999984211 11223333 33366544432 55554433335556
Q ss_pred CCh
Q 048238 339 GEK 341 (395)
Q Consensus 339 ~~~ 341 (395)
|.+
T Consensus 668 d~~ 670 (723)
T 4gyw_A 668 DLE 670 (723)
T ss_dssp CHH
T ss_pred CHH
Confidence 653
No 49
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=96.91 E-value=0.0022 Score=60.39 Aligned_cols=95 Identities=9% Similarity=0.099 Sum_probs=70.3
Q ss_pred CeEEecCCCHHHH---hcccCccceeecCCc---------hhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEee
Q 048238 247 GLVVRDWVNQKEI---LWHESVQGFLSHCGW---------NSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVE 314 (395)
Q Consensus 247 ~~~~~~~~pq~~l---l~~~~~~~~IthgG~---------~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~ 314 (395)
|+.+.+|+|..++ |+.++.+++.+-+.+ +-+.|++++|+|+|+.+ ...++..+.+. ++|+.++
T Consensus 215 nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~----~~~~~~~v~~~-~~G~~~~ 289 (339)
T 3rhz_A 215 NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQE----GIANQELIENN-GLGWIVK 289 (339)
T ss_dssp TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEET----TCTTTHHHHHH-TCEEEES
T ss_pred CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEcc----ChhHHHHHHhC-CeEEEeC
Confidence 9999999998764 555555444433322 34789999999999865 34677778777 9999886
Q ss_pred ccCCCCcCccCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q 048238 315 TCDGSVRGFVKWQGLEKTVRELMGGEKGEKARTKVKELSEIAR 357 (395)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~ 357 (395)
+.+++.+++..+. +++.+++++|+++.++.++
T Consensus 290 ----------~~~e~~~~i~~l~-~~~~~~m~~na~~~a~~~~ 321 (339)
T 3rhz_A 290 ----------DVEEAIMKVKNVN-EDEYIELVKNVRSFNPILR 321 (339)
T ss_dssp ----------SHHHHHHHHHHCC-HHHHHHHHHHHHHHTHHHH
T ss_pred ----------CHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhh
Confidence 4678888888764 3345789999999988876
No 50
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=96.58 E-value=0.055 Score=52.90 Aligned_cols=133 Identities=13% Similarity=0.055 Sum_probs=80.5
Q ss_pred CCeeEEEeccccc-CCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHh--cCCCeE-EecCCCH--HHHhcccCc
Q 048238 192 SSVMYVAFGSQAE-ISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERV--KGRGLV-VRDWVNQ--KEILWHESV 265 (395)
Q Consensus 192 ~~vv~vs~Gs~~~-~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~pq--~~ll~~~~~ 265 (395)
+..+++..|.... ...+.+.+.+..+.+.+.+++++-++. ......+.+.. .+.++. +.++... ..+++.+++
T Consensus 291 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~-~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~adv 369 (485)
T 2qzs_A 291 KVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGD-PVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADV 369 (485)
T ss_dssp TSCEEEEEEEESGGGCHHHHHHHHHHHHHTTCEEEEEEEEC-HHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHHCSE
T ss_pred CCeEEEEeccCccccCHHHHHHHHHHHhhCCcEEEEEeCCc-hHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHhCCE
Confidence 3456667787753 233444444444444466766554331 11122232222 136775 7777433 368999999
Q ss_pred cceeecC---C-chhHHHHHhcCCcEEeccCCCchhHHHHHHhhhh---------ceEEEeeccCCCCcCccCHHHHHHH
Q 048238 266 QGFLSHC---G-WNSALESICAGVPILAWPIMADQPLNARMVTEEI---------KVALRVETCDGSVRGFVKWQGLEKT 332 (395)
Q Consensus 266 ~~~Ithg---G-~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~l---------g~g~~~~~~~~~~~~~~~~~~l~~~ 332 (395)
+|.-. | -++++||+++|+|+|+... ......+ +.- +.|+.+.. -+.++++++
T Consensus 370 --~v~pS~~E~~g~~~lEAma~G~PvI~s~~----gg~~e~v-~~~~~~~~~~~~~~G~l~~~--------~d~~~la~~ 434 (485)
T 2qzs_A 370 --ILVPSRFEPCGLTQLYGLKYGTLPLVRRT----GGLADTV-SDCSLENLADGVASGFVFED--------SNAWSLLRA 434 (485)
T ss_dssp --EEECCSCCSSCSHHHHHHHHTCEEEEESS----HHHHHHC-CBCCHHHHHTTCCCBEEECS--------SSHHHHHHH
T ss_pred --EEECCccCCCcHHHHHHHHCCCCEEECCC----CCcccee-ccCccccccccccceEEECC--------CCHHHHHHH
Confidence 76433 2 4678999999999999854 2344444 331 36777763 378999999
Q ss_pred HHHHh---CCC
Q 048238 333 VRELM---GGE 340 (395)
Q Consensus 333 i~~~l---~~~ 340 (395)
|.+++ +|+
T Consensus 435 i~~ll~~~~~~ 445 (485)
T 2qzs_A 435 IRRAFVLWSRP 445 (485)
T ss_dssp HHHHHHHHTSH
T ss_pred HHHHHHHcCCH
Confidence 99999 666
No 51
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=96.56 E-value=0.056 Score=52.81 Aligned_cols=132 Identities=8% Similarity=-0.002 Sum_probs=80.5
Q ss_pred CeeEEEecccccCC-HHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHh--cCCCeE-EecCCCH--HHHhcccCcc
Q 048238 193 SVMYVAFGSQAEIS-AQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERV--KGRGLV-VRDWVNQ--KEILWHESVQ 266 (395)
Q Consensus 193 ~vv~vs~Gs~~~~~-~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~pq--~~ll~~~~~~ 266 (395)
..+++..|...... .+.+.+.+..+.+.+.+++++-++. ......+.+.. .+.++. +.++... ..+++.+++
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~-~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~adv- 368 (485)
T 1rzu_A 291 SPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGD-VALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDA- 368 (485)
T ss_dssp SCEEEEESCBSTTTTHHHHHTTHHHHHHTTCEEEEEECBC-HHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHHCSE-
T ss_pred CeEEEEEccCccccCHHHHHHHHHHHHhcCceEEEEeCCc-hHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhcCCE-
Confidence 34677788886432 3444444444444566766554331 11122233222 136786 6777333 358999999
Q ss_pred ceeec----CCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhh---------ceEEEeeccCCCCcCccCHHHHHHHH
Q 048238 267 GFLSH----CGWNSALESICAGVPILAWPIMADQPLNARMVTEEI---------KVALRVETCDGSVRGFVKWQGLEKTV 333 (395)
Q Consensus 267 ~~Ith----gG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~l---------g~g~~~~~~~~~~~~~~~~~~l~~~i 333 (395)
+|.- |--.+++||+++|+|+|+... ......+ +.- +.|+.++. -+.++++++|
T Consensus 369 -~v~pS~~E~~~~~~lEAma~G~PvI~s~~----gg~~e~v-~~~~~~~~~~~~~~G~l~~~--------~d~~~la~~i 434 (485)
T 1rzu_A 369 -IIIPSRFEPCGLTQLYALRYGCIPVVART----GGLADTV-IDANHAALASKAATGVQFSP--------VTLDGLKQAI 434 (485)
T ss_dssp -EEECCSCCSSCSHHHHHHHHTCEEEEESS----HHHHHHC-CBCCHHHHHTTCCCBEEESS--------CSHHHHHHHH
T ss_pred -EEECcccCCCCHHHHHHHHCCCCEEEeCC----CChhhee-cccccccccccCCcceEeCC--------CCHHHHHHHH
Confidence 7743 224689999999999999754 2334444 331 36777763 3789999999
Q ss_pred HHHh---CCC
Q 048238 334 RELM---GGE 340 (395)
Q Consensus 334 ~~~l---~~~ 340 (395)
.+++ +|+
T Consensus 435 ~~ll~~~~~~ 444 (485)
T 1rzu_A 435 RRTVRYYHDP 444 (485)
T ss_dssp HHHHHHHTCH
T ss_pred HHHHHHhCCH
Confidence 9999 666
No 52
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=95.30 E-value=0.08 Score=50.76 Aligned_cols=116 Identities=11% Similarity=0.015 Sum_probs=74.7
Q ss_pred eeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCHH---HHhcccCccceee
Q 048238 194 VMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQK---EILWHESVQGFLS 270 (395)
Q Consensus 194 vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~---~ll~~~~~~~~It 270 (395)
.+++..|.+... ...+..+.+. ..+.+++++ |... . .+....+++.+.+++|+. ++++.+++ +|.
T Consensus 223 ~~i~~vGrl~~~-Kg~~~~l~~~--~~~~~l~iv-G~g~--~----~~~~l~~~V~f~G~~~~~~l~~~~~~adv--~v~ 290 (406)
T 2hy7_A 223 IHAVAVGSMLFD-PEFFVVASKA--FPQVTFHVI-GSGM--G----RHPGYGDNVIVYGEMKHAQTIGYIKHARF--GIA 290 (406)
T ss_dssp EEEEEECCTTBC-HHHHHHHHHH--CTTEEEEEE-SCSS--C----CCTTCCTTEEEECCCCHHHHHHHHHTCSE--EEC
T ss_pred cEEEEEeccccc-cCHHHHHHHh--CCCeEEEEE-eCch--H----HhcCCCCCEEEcCCCCHHHHHHHHHhcCE--EEE
Confidence 566777887642 2332222211 234555544 5421 0 000124689999999864 47889998 664
Q ss_pred ---cCCc-hhHHHHH-------hcCCcEEeccCCCchhHHHHHHhhhhceEEE-eeccCCCCcCccCHHHHHHHHHHHhC
Q 048238 271 ---HCGW-NSALESI-------CAGVPILAWPIMADQPLNARMVTEEIKVALR-VETCDGSVRGFVKWQGLEKTVRELMG 338 (395)
Q Consensus 271 ---hgG~-~s~~Ea~-------~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~-~~~~~~~~~~~~~~~~l~~~i~~~l~ 338 (395)
+-|+ +++.||+ ++|+|+|+... +.+. ..|+. +.. -+.++++++|.++++
T Consensus 291 ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~----------v~~~-~~G~l~v~~--------~d~~~la~ai~~ll~ 351 (406)
T 2hy7_A 291 PYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA----------VVGP-YKSRFGYTP--------GNADSVIAAITQALE 351 (406)
T ss_dssp CBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG----------GTCS-CSSEEEECT--------TCHHHHHHHHHHHHH
T ss_pred CCCcccCchHHHHHHHHHHHHhhCCCcEEEehh----------cccC-cceEEEeCC--------CCHHHHHHHHHHHHh
Confidence 2343 5788999 99999999854 4444 56777 653 378999999999998
Q ss_pred CC
Q 048238 339 GE 340 (395)
Q Consensus 339 ~~ 340 (395)
++
T Consensus 352 ~~ 353 (406)
T 2hy7_A 352 AP 353 (406)
T ss_dssp CC
T ss_pred Cc
Confidence 77
No 53
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=95.23 E-value=0.052 Score=52.30 Aligned_cols=80 Identities=15% Similarity=0.074 Sum_probs=57.5
Q ss_pred CCeEEecCCCHH---HHhcccCccceeecC---Cc-hhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCC
Q 048238 246 RGLVVRDWVNQK---EILWHESVQGFLSHC---GW-NSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDG 318 (395)
Q Consensus 246 ~~~~~~~~~pq~---~ll~~~~~~~~Ithg---G~-~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~ 318 (395)
.++.+.+++++. ++++.+++ ||.-+ |. ..++||+++|+|+|+- -.+ ....+.+. ..|+.+..
T Consensus 295 ~~v~f~G~~~~~~l~~~~~~adv--~v~pS~~E~~g~~~lEAmA~G~PVV~~-~~g----~~e~v~~~-~~G~lv~~--- 363 (413)
T 2x0d_A 295 IHLNSLGKLTLEDYADLLKRSSI--GISLMISPHPSYPPLEMAHFGLRVITN-KYE----NKDLSNWH-SNIVSLEQ--- 363 (413)
T ss_dssp EEEEEEESCCHHHHHHHHHHCCE--EECCCSSSSCCSHHHHHHHTTCEEEEE-CBT----TBCGGGTB-TTEEEESS---
T ss_pred CcEEEcCCCCHHHHHHHHHhCCE--EEEecCCCCCCcHHHHHHhCCCcEEEe-CCC----cchhhhcC-CCEEEeCC---
Confidence 478888999865 48889999 76432 44 4679999999999983 222 12334333 47887764
Q ss_pred CCcCccCHHHHHHHHHHHhCCCh
Q 048238 319 SVRGFVKWQGLEKTVRELMGGEK 341 (395)
Q Consensus 319 ~~~~~~~~~~l~~~i~~~l~~~~ 341 (395)
-+.++++++|.++++|++
T Consensus 364 -----~d~~~la~ai~~ll~~~~ 381 (413)
T 2x0d_A 364 -----LNPENIAETLVELCMSFN 381 (413)
T ss_dssp -----CSHHHHHHHHHHHHHHTC
T ss_pred -----CCHHHHHHHHHHHHcCHH
Confidence 488999999999998773
No 54
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=93.80 E-value=2.2 Score=42.43 Aligned_cols=138 Identities=12% Similarity=0.025 Sum_probs=78.1
Q ss_pred CeeEEEeccccc-CCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHH--HhcCCCeEEecCCCHH---HHhcccCcc
Q 048238 193 SVMYVAFGSQAE-ISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEE--RVKGRGLVVRDWVNQK---EILWHESVQ 266 (395)
Q Consensus 193 ~vv~vs~Gs~~~-~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~pq~---~ll~~~~~~ 266 (395)
..+++..|.... ...+.+.+.+..+.+.+.+++++..+. ......+.. ...+.++.+....+.. .+++.+++
T Consensus 327 ~p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aD~- 404 (536)
T 3vue_A 327 IPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGK-KKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADV- 404 (536)
T ss_dssp SCEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBC-HHHHHHHHHHHHHSTTTEEEECSCCHHHHHHHHHHCSE-
T ss_pred CcEEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccC-chHHHHHHHHHhhcCCceEEEEeccHHHHHHHHHhhhe-
Confidence 344555677653 233444444444555666766554332 111111221 1234677777777653 47888898
Q ss_pred ceeecC---Cc-hhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCC--CcCccCHHHHHHHHHHHhC
Q 048238 267 GFLSHC---GW-NSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGS--VRGFVKWQGLEKTVRELMG 338 (395)
Q Consensus 267 ~~Ithg---G~-~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~--~~~~~~~~~l~~~i~~~l~ 338 (395)
||.-+ |. .+++||+++|+|+|+... .-....|.+. ..|........+ --...+.+.+.++|++++.
T Consensus 405 -~v~PS~~E~fgl~~lEAma~G~PvI~s~~----gG~~e~V~dg-~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~ 476 (536)
T 3vue_A 405 -LAVPSRFEPCGLIQLQGMRYGTPCACAST----GGLVDTVIEG-KTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIK 476 (536)
T ss_dssp -EEECCSCCSSCSHHHHHHHTTCCEEECSC----THHHHHCCBT-TTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHH
T ss_pred -eecccccCCCCHHHHHHHHcCCCEEEcCC----CCchheeeCC-CCccccccCCCceeEECCCCHHHHHHHHHHHHH
Confidence 77542 32 488999999999998643 3444555444 456544321000 0012467889999988774
No 55
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=93.18 E-value=0.24 Score=46.40 Aligned_cols=97 Identities=13% Similarity=0.171 Sum_probs=61.2
Q ss_pred CCCeeEEEecccc---cCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCC---HHHHhcccC
Q 048238 191 GSSVMYVAFGSQA---EISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVN---QKEILWHES 264 (395)
Q Consensus 191 ~~~vv~vs~Gs~~---~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---q~~ll~~~~ 264 (395)
+++.|.+.-||.. ..+.+.+.++++.|.+.+.++++..++.+.+....+.+......+.+.+-.. ...++++++
T Consensus 184 ~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~ali~~a~ 263 (349)
T 3tov_A 184 TDILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQMETKPIVATGKFQLGPLAAAMNRCN 263 (349)
T ss_dssp TCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECCCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHHHHHHTCS
T ss_pred CCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEeCcchHHHHHHHHHhcccccEEeeCCCCHHHHHHHHHhCC
Confidence 4688888888753 3667899999999877788887743332212222222222222233333333 345899999
Q ss_pred ccceeecCCchhHHHHHhcCCcEEec
Q 048238 265 VQGFLSHCGWNSALESICAGVPILAW 290 (395)
Q Consensus 265 ~~~~IthgG~~s~~Ea~~~GvP~i~~ 290 (395)
+ +|+.-...+-+ |.+.|+|+|++
T Consensus 264 ~--~i~~DsG~~Hl-Aaa~g~P~v~l 286 (349)
T 3tov_A 264 L--LITNDSGPMHV-GISQGVPIVAL 286 (349)
T ss_dssp E--EEEESSHHHHH-HHTTTCCEEEE
T ss_pred E--EEECCCCHHHH-HHhcCCCEEEE
Confidence 9 99984433333 88899999986
No 56
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=90.67 E-value=0.73 Score=42.63 Aligned_cols=97 Identities=8% Similarity=0.015 Sum_probs=60.0
Q ss_pred CCCeeEEEecc-c-c--cCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhc---CCCe-EEecCCC---HHHH
Q 048238 191 GSSVMYVAFGS-Q-A--EISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVK---GRGL-VVRDWVN---QKEI 259 (395)
Q Consensus 191 ~~~vv~vs~Gs-~-~--~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~p---q~~l 259 (395)
+++.|.+.-|| . . ..+.+.+.++++.|.+.+.++++..++.+.+....+.+... ..++ .+.+... ..++
T Consensus 179 ~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sl~e~~al 258 (348)
T 1psw_A 179 ERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVIL 258 (348)
T ss_dssp SSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHTTCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHH
T ss_pred CCcEEEEECCCCccccCCCCHHHHHHHHHHHHHCCCeEEEEeChhhHHHHHHHHHhhhhccccceEeccCcCCHHHHHHH
Confidence 46788888888 3 2 36678999999998877888876533321111111111110 0133 2333333 3468
Q ss_pred hcccCccceeecCCchhHHHHHhcCCcEEec
Q 048238 260 LWHESVQGFLSHCGWNSALESICAGVPILAW 290 (395)
Q Consensus 260 l~~~~~~~~IthgG~~s~~Ea~~~GvP~i~~ 290 (395)
++++++ +|+.- .|.+.-|.+.|+|+|++
T Consensus 259 i~~a~l--~I~~D-sg~~HlAaa~g~P~v~l 286 (348)
T 1psw_A 259 IAACKA--IVTND-SGLMHVAAALNRPLVAL 286 (348)
T ss_dssp HHTSSE--EEEES-SHHHHHHHHTTCCEEEE
T ss_pred HHhCCE--EEecC-CHHHHHHHHcCCCEEEE
Confidence 999999 99984 34566688899999875
No 57
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=87.10 E-value=6.7 Score=32.63 Aligned_cols=102 Identities=12% Similarity=0.006 Sum_probs=54.0
Q ss_pred chHHHHHhhhccCCCCCeeEEEecc-cccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCC
Q 048238 177 KPAWIRWLDRKLDEGSSVMYVAFGS-QAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVN 255 (395)
Q Consensus 177 ~~~l~~~l~~~~~~~~~vv~vs~Gs-~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 255 (395)
-.++-++|.+. ...+|+.|. .+. ..+..++..+.+-.++=+++....+.+..+ -...++....+
T Consensus 34 A~~lg~~La~~-----g~~lVsGGg~~Gi-----m~aa~~gAl~~gG~tigVlP~~~~~~~~~~-----~~~~i~~~~~~ 98 (176)
T 2iz6_A 34 ANELGKQIATH-----GWILLTGGRSLGV-----MHEAMKGAKEAGGTTIGVLPGPDTSEISDA-----VDIPIVTGLGS 98 (176)
T ss_dssp HHHHHHHHHHT-----TCEEEEECSSSSH-----HHHHHHHHHHTTCCEEEEECC-----CCTT-----CSEEEECCCCS
T ss_pred HHHHHHHHHHC-----CCEEEECCCccCH-----hHHHHHHHHHcCCEEEEEeCchhhhhhccC-----CceeEEcCCHH
Confidence 34455566553 567777777 543 233344444445454444432111111100 01234455556
Q ss_pred HH-HHhcccCccceeecCCchhHHHH---HhcCCcEEeccCC
Q 048238 256 QK-EILWHESVQGFLSHCGWNSALES---ICAGVPILAWPIM 293 (395)
Q Consensus 256 q~-~ll~~~~~~~~IthgG~~s~~Ea---~~~GvP~i~~P~~ 293 (395)
+. .++...+-..++--||.||+.|+ +.+++|++.+|.+
T Consensus 99 ~Rk~~m~~~sda~IvlpGg~GTL~E~~~al~~~kpV~~l~~~ 140 (176)
T 2iz6_A 99 ARDNINALSSNVLVAVGMGPGTAAEVALALKAKKPVVLLGTQ 140 (176)
T ss_dssp SSCCCCGGGCSEEEEESCCHHHHHHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHhCCEEEEecCCccHHHHHHHHHHhCCcEEEEcCc
Confidence 43 34444344456777888887665 6699999999983
No 58
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=85.08 E-value=1.4 Score=38.46 Aligned_cols=148 Identities=13% Similarity=0.031 Sum_probs=78.6
Q ss_pred CCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCHHHHhcccCccceee
Q 048238 191 GSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQKEILWHESVQGFLS 270 (395)
Q Consensus 191 ~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~It 270 (395)
+++++.|..|.++ ...+..|.+.|..+.++... ....+.+.....++.......+...|..+++ +|.
T Consensus 31 gk~VLVVGgG~va-------~~ka~~Ll~~GA~VtVvap~----~~~~l~~l~~~~~i~~i~~~~~~~dL~~adL--VIa 97 (223)
T 3dfz_A 31 GRSVLVVGGGTIA-------TRRIKGFLQEGAAITVVAPT----VSAEINEWEAKGQLRVKRKKVGEEDLLNVFF--IVV 97 (223)
T ss_dssp TCCEEEECCSHHH-------HHHHHHHGGGCCCEEEECSS----CCHHHHHHHHTTSCEEECSCCCGGGSSSCSE--EEE
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCEEEEECCC----CCHHHHHHHHcCCcEEEECCCCHhHhCCCCE--EEE
Confidence 5778877777654 44556777788888777643 3333443333334444333334456777777 888
Q ss_pred cCCchhHHHHHh----cCCcEEeccCCCchhHHHHH----HhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHhCCChh
Q 048238 271 HCGWNSALESIC----AGVPILAWPIMADQPLNARM----VTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGEKG 342 (395)
Q Consensus 271 hgG~~s~~Ea~~----~GvP~i~~P~~~DQ~~na~~----v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 342 (395)
--|--.+.+.++ .|+|+-+ .|.+..+.. +.++-++-+.+..+ ..+..-+..|++.|...+. ++.
T Consensus 98 AT~d~~~N~~I~~~ak~gi~VNv----vD~p~~~~f~~Paiv~rg~l~iaIST~---G~sP~la~~iR~~ie~~lp-~~~ 169 (223)
T 3dfz_A 98 ATNDQAVNKFVKQHIKNDQLVNM----ASSFSDGNIQIPAQFSRGRLSLAISTD---GASPLLTKRIKEDLSSNYD-ESY 169 (223)
T ss_dssp CCCCTHHHHHHHHHSCTTCEEEC---------CCSEECCEEEEETTEEEEEECT---TSCHHHHHHHHHHHHHHSC-THH
T ss_pred CCCCHHHHHHHHHHHhCCCEEEE----eCCcccCeEEEeeEEEeCCEEEEEECC---CCCcHHHHHHHHHHHHHcc-HHH
Confidence 888766655544 3555332 455444421 11221455555530 0112334456666666663 333
Q ss_pred HHHHHHHHHHHHHHHHh
Q 048238 343 EKARTKVKELSEIARKA 359 (395)
Q Consensus 343 ~~~~~~a~~l~~~~~~~ 359 (395)
..+-+.+.++++.+++.
T Consensus 170 ~~~~~~~~~~R~~vk~~ 186 (223)
T 3dfz_A 170 TQYTQFLYECRVLIHRL 186 (223)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46777777777777653
No 59
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=84.70 E-value=0.72 Score=42.38 Aligned_cols=139 Identities=12% Similarity=0.006 Sum_probs=79.0
Q ss_pred CCCeeEEEecccc---cCCHHHHHHHHHHHHhCCCcEEEEEcCC-CCccchhHHHHhcCCCeEEecCCC---HHHHhccc
Q 048238 191 GSSVMYVAFGSQA---EISAQQLKEIATGLEQSKVNFLWVIRKA-ESELGDGFEERVKGRGLVVRDWVN---QKEILWHE 263 (395)
Q Consensus 191 ~~~vv~vs~Gs~~---~~~~~~~~~l~~~l~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p---q~~ll~~~ 263 (395)
+++.|.+.-|+.. .++.+.+.++++.|.+.++++++..+.. +.+....+.+. -+++.+.+-.. -.++++++
T Consensus 177 ~~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~~~e~~~~~~i~~~--~~~~~l~g~~sl~el~ali~~a 254 (326)
T 2gt1_A 177 AGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEG--FAYVEVLPKMSLEGVARVLAGA 254 (326)
T ss_dssp TTSEEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSSHHHHHHHHHHHTT--CTTEEECCCCCHHHHHHHHHTC
T ss_pred CCCEEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHHHhh--CCcccccCCCCHHHHHHHHHhC
Confidence 4677888878763 3677899999998877788877664532 11111111111 12444434333 34589999
Q ss_pred CccceeecCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceE-EEeeccCCCCcCccCHHHHHHHHHHHhCCC
Q 048238 264 SVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVA-LRVETCDGSVRGFVKWQGLEKTVRELMGGE 340 (395)
Q Consensus 264 ~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g-~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~ 340 (395)
++ +|+.-....-+ |.+.|+|+|++=-..+-...+ -+|-. ..+.. ...+-..++++++.+++.+++++-
T Consensus 255 ~l--~I~~DSG~~Hl-Aaa~g~P~v~lfg~t~p~~~~-----P~~~~~~~~~~-~~~cm~~I~~~~V~~~i~~~l~~~ 323 (326)
T 2gt1_A 255 KF--VVSVDTGLSHL-TAALDRPNITVYGPTDPGLIG-----GYGKNQMVCRA-PGNELSQLTANAVKQFIEENAEKA 323 (326)
T ss_dssp SE--EEEESSHHHHH-HHHTTCCEEEEESSSCHHHHC-----CCSSSEEEEEC-GGGCGGGCCHHHHHHHHHHTTTTC
T ss_pred CE--EEecCCcHHHH-HHHcCCCEEEEECCCChhhcC-----CCCCCceEecC-CcccccCCCHHHHHHHHHHHHHHh
Confidence 99 99995433333 666999999871111111110 01211 11211 001224689999999999998753
No 60
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=83.68 E-value=6.2 Score=38.50 Aligned_cols=109 Identities=14% Similarity=0.118 Sum_probs=66.2
Q ss_pred eE-EecCCCHHH---HhcccCccceee---cCCch-hHHHHHhcCC-----cEEeccCCCchhHHHHHHhhhhceEEEee
Q 048238 248 LV-VRDWVNQKE---ILWHESVQGFLS---HCGWN-SALESICAGV-----PILAWPIMADQPLNARMVTEEIKVALRVE 314 (395)
Q Consensus 248 ~~-~~~~~pq~~---ll~~~~~~~~It---hgG~~-s~~Ea~~~Gv-----P~i~~P~~~DQ~~na~~v~~~lg~g~~~~ 314 (395)
++ +.+++++.+ +++.+++ ||. +=|+| ++.|++++|+ |+|+--+.+ .+..+ ..|+.++
T Consensus 333 v~~~~g~v~~~el~~ly~~ADv--~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G----~~~~l----~~g~lv~ 402 (482)
T 1uqt_A 333 LYYLNQHFDRKLLMKIFRYSDV--GLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAG----AANEL----TSALIVN 402 (482)
T ss_dssp EEEECSCCCHHHHHHHHHHCSE--EEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBG----GGGTC----TTSEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHccE--EEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCC----CHHHh----CCeEEEC
Confidence 44 457788654 7888998 665 33664 7889999998 677654432 11111 2356665
Q ss_pred ccCCCCcCccCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHHHHh
Q 048238 315 TCDGSVRGFVKWQGLEKTVRELMGGEKGEKARTKVKELSEIARKAMEEEKGSSWRCLDMLLDETCKY 381 (395)
Q Consensus 315 ~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 381 (395)
. .+.+.++++|.++|++++. ..+++.++.++.++ + -+.....+.+++.+...
T Consensus 403 p--------~d~~~lA~ai~~lL~~~~~-~r~~~~~~~~~~v~----~--~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 403 P--------YDRDEVAAALDRALTMSLA-ERISRHAEMLDVIV----K--NDINHWQECFISDLKQI 454 (482)
T ss_dssp T--------TCHHHHHHHHHHHHTCCHH-HHHHHHHHHHHHHH----H--TCHHHHHHHHHHHHHHS
T ss_pred C--------CCHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHH----h--CCHHHHHHHHHHHHHhc
Confidence 4 4789999999999986421 23333444444443 2 23555566666666543
No 61
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=80.77 E-value=5.4 Score=40.67 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=27.1
Q ss_pred HHHhcccCccceeecC---Cc-hhHHHHHhcCCcEEeccC
Q 048238 257 KEILWHESVQGFLSHC---GW-NSALESICAGVPILAWPI 292 (395)
Q Consensus 257 ~~ll~~~~~~~~Ithg---G~-~s~~Ea~~~GvP~i~~P~ 292 (395)
.++++.+++ ||.-+ |+ .+++||+++|+|+|+.-.
T Consensus 513 ~~~~~~adv--fV~PS~~EgfGl~~LEAmA~G~PvI~s~~ 550 (725)
T 3nb0_A 513 DEFVRGCHL--GVFPSYYEPWGYTPAECTVMGVPSITTNV 550 (725)
T ss_dssp HHHHHHCSE--EECCCSSBSSCHHHHHHHHTTCCEEEETT
T ss_pred HHHHhhceE--EEeccccCCCCHHHHHHHHcCCCEEEeCC
Confidence 468999999 77554 33 589999999999998755
No 62
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=79.88 E-value=22 Score=29.44 Aligned_cols=147 Identities=14% Similarity=0.126 Sum_probs=75.9
Q ss_pred CCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHH---HhcCCCeEEecCCCHHHHhcccCccc
Q 048238 191 GSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEE---RVKGRGLVVRDWVNQKEILWHESVQG 267 (395)
Q Consensus 191 ~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~pq~~ll~~~~~~~ 267 (395)
-+|.|-|-+||.+ +....++..+.|+..+..+-..+-+. ...|+.+.+ .....+ ++.
T Consensus 21 mkp~V~IimGS~S--D~~v~~~a~~~L~~~gI~~e~~V~SA-HRtp~~l~~~~~~a~~~g-----------------~~V 80 (181)
T 4b4k_A 21 MKSLVGVIMGSTS--DWETMKYACDILDELNIPYEKKVVSA-HRTPDYMFEYAETARERG-----------------LKV 80 (181)
T ss_dssp -CCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCT-TTSHHHHHHHHHHTTTTT-----------------CCE
T ss_pred CCccEEEEECCHh--HHHHHHHHHHHHHHcCCCeeEEEEcc-ccChHHHHHHHHHHHhcC-----------------ceE
Confidence 3678889999987 45677888888888887765544332 224443322 222222 233
Q ss_pred eeecCCchhHHHH---HhcCCcEEeccCCCc---hhHHHHHHhhhh-ceEEEeeccCCCCcCccCHHHHHHHHHHHhCCC
Q 048238 268 FLSHCGWNSALES---ICAGVPILAWPIMAD---QPLNARMVTEEI-KVALRVETCDGSVRGFVKWQGLEKTVRELMGGE 340 (395)
Q Consensus 268 ~IthgG~~s~~Ea---~~~GvP~i~~P~~~D---Q~~na~~v~~~l-g~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~ 340 (395)
+|.=.|.-.-+-+ -..-+|+|.+|.... -.....-+++.= |+.+.--.. +..+..++.-++..|-. +.|+
T Consensus 81 iIa~AG~aahLpGvvAa~T~~PVIGVPv~s~~l~G~DsLlSivQMP~GvpVaTvai--g~~ga~NAallA~qILa-~~d~ 157 (181)
T 4b4k_A 81 IIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAI--GKAGSTNAGLLAAQILG-SFHD 157 (181)
T ss_dssp EEEEECSSCCHHHHHHTTCCSCEEEEECCCTTTTTHHHHHHHHTCCTTCCCEECCS--SHHHHHHHHHHHHHHHT-TTCH
T ss_pred EEEeccccccchhhHHhcCCCCEEEEecCCCCccchhhHHHHHhCCCCCceEEEec--CCccHHHHHHHHHHHHc-cCCH
Confidence 6666664322222 245689999998543 222233333330 333322110 00011223333333321 2455
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhC
Q 048238 341 KGEKARTKVKELSEIARKAMEEE 363 (395)
Q Consensus 341 ~~~~~~~~a~~l~~~~~~~~~~~ 363 (395)
.++++.+..++..++.+.+.
T Consensus 158 ---~l~~kl~~~r~~~~~~v~~~ 177 (181)
T 4b4k_A 158 ---DIHDALELRREAIEKDVREG 177 (181)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHHHHHHHHh
Confidence 68888877777776655444
No 63
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=79.05 E-value=50 Score=32.20 Aligned_cols=111 Identities=8% Similarity=0.048 Sum_probs=71.3
Q ss_pred CeEEecCCCHH---HHhcccCccceee---cCCchh-HHHHHhcC---CcEEeccCCCchhHHHHHHhhhhceEEEeecc
Q 048238 247 GLVVRDWVNQK---EILWHESVQGFLS---HCGWNS-ALESICAG---VPILAWPIMADQPLNARMVTEEIKVALRVETC 316 (395)
Q Consensus 247 ~~~~~~~~pq~---~ll~~~~~~~~It---hgG~~s-~~Ea~~~G---vP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~ 316 (395)
.+++.+.+++. .+++.+++ |+. +=|+|. ..|++++| .|+|+--+.+ .+..+ . ..|+.++.
T Consensus 353 ~V~f~g~v~~~el~aly~~ADv--~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aG----a~~~l-~--~~allVnP- 422 (496)
T 3t5t_A 353 TVRIDNDNDVNHTIACFRRADL--LIFNSTVDGQNLSTFEAPLVNERDADVILSETCG----AAEVL-G--EYCRSVNP- 422 (496)
T ss_dssp SEEEEECCCHHHHHHHHHHCSE--EEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBT----THHHH-G--GGSEEECT-
T ss_pred CEEEeCCCCHHHHHHHHHhccE--EEECcccccCChhHHHHHHhCCCCCCEEEeCCCC----CHHHh-C--CCEEEECC-
Confidence 57777778764 47777888 554 458875 57999996 6666654433 12222 1 24777774
Q ss_pred CCCCcCccCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhCCCchHHHHHHHHHHHHHh
Q 048238 317 DGSVRGFVKWQGLEKTVRELMGGEKGEKARTKVKELSEIARKAMEEEKGSSWRCLDMLLDETCKY 381 (395)
Q Consensus 317 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 381 (395)
.+.+.++++|.++|+.+. +.-+++.+++.+.++ + -+...-.+.+++.|...
T Consensus 423 -------~D~~~lA~AI~~aL~m~~-~er~~r~~~~~~~V~----~--~d~~~W~~~fl~~L~~~ 473 (496)
T 3t5t_A 423 -------FDLVEQAEAISAALAAGP-RQRAEAAARRRDAAR----P--WTLEAWVQAQLDGLAAD 473 (496)
T ss_dssp -------TBHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHT----T--CBHHHHHHHHHHHHHHH
T ss_pred -------CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH----H--CCHHHHHHHHHHHHhhc
Confidence 489999999999998652 134445555555543 2 33556677788777664
No 64
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=76.18 E-value=41 Score=29.98 Aligned_cols=152 Identities=13% Similarity=0.003 Sum_probs=78.3
Q ss_pred CCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHh----------------------cCCCe
Q 048238 191 GSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERV----------------------KGRGL 248 (395)
Q Consensus 191 ~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~----------------------~~~~~ 248 (395)
++.++.|..|..+ ...+..|...|..+.++......++...+.... ...++
T Consensus 13 ~k~VLVVGgG~va-------~rka~~Ll~~Ga~VtViap~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~i 85 (274)
T 1kyq_A 13 DKRILLIGGGEVG-------LTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRFINPNWDPTKNEI 85 (274)
T ss_dssp TCEEEEEEESHHH-------HHHHHHHGGGTCEEEEEEEEECTTHHHHHCGGGC-----------CEEECTTCCTTSCCC
T ss_pred CCEEEEECCcHHH-------HHHHHHHHhCCCEEEEEcCCCCcchhHHHHHHHhccccccccchhhcccccccccccCCe
Confidence 4677777777665 455667778899887776542111111121111 11233
Q ss_pred -EEecCCCHHHHhc------ccCccceeecCCchhHHHHHh-----c---CCcEEeccCCCchhHHHH-----HHhhhhc
Q 048238 249 -VVRDWVNQKEILW------HESVQGFLSHCGWNSALESIC-----A---GVPILAWPIMADQPLNAR-----MVTEEIK 308 (395)
Q Consensus 249 -~~~~~~pq~~ll~------~~~~~~~IthgG~~s~~Ea~~-----~---GvP~i~~P~~~DQ~~na~-----~v~~~lg 308 (395)
.+..-.-....|. .+++ +|.--|-..+.+.++ . |+|+-++ |.+.++. .+.+. +
T Consensus 86 ~~~i~~~~~~~dL~~l~~~~~adl--Viaat~d~~~n~~I~~~Ar~~f~~~i~VNvv----d~pel~~f~~Pa~~~~g-~ 158 (274)
T 1kyq_A 86 YEYIRSDFKDEYLDLENENDAWYI--IMTCIPDHPESARIYHLCKERFGKQQLVNVA----DKPDLCDFYFGANLEIG-D 158 (274)
T ss_dssp SEEECSSCCGGGGCCSSTTCCEEE--EEECCSCHHHHHHHHHHHHHHHCTTSEEEET----TCGGGBSEECCEEEEET-T
T ss_pred eEEEcCCCCHHHHhhcccCCCeEE--EEEcCCChHHHHHHHHHHHHhcCCCcEEEEC----CCcccCeeEeeeEEEeC-C
Confidence 2212111233444 5666 887777654444332 3 6665332 3333333 22222 3
Q ss_pred -eEEEeeccCCCCcCccCHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHHh
Q 048238 309 -VALRVETCDGSVRGFVKWQGLEKTVRELM---GGEKGEKARTKVKELSEIARKA 359 (395)
Q Consensus 309 -~g~~~~~~~~~~~~~~~~~~l~~~i~~~l---~~~~~~~~~~~a~~l~~~~~~~ 359 (395)
+-+.+..+ ..+..-+..|++.|...+ .+++...+-+.+.++++.+++.
T Consensus 159 ~l~IaIST~---Gksp~lA~~ir~~ie~~l~~~p~~~~~~~~~~l~~~R~~ik~~ 210 (274)
T 1kyq_A 159 RLQILISTN---GLSPRFGALVRDEIRNLFTQMGDLALEDAVVKLGELRRGIRLL 210 (274)
T ss_dssp TEEEEEEES---SSCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECC---CCCcHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 34444431 112344567888888888 5444346777777888887754
No 65
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=67.74 E-value=3.9 Score=31.83 Aligned_cols=38 Identities=11% Similarity=-0.124 Sum_probs=26.5
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHH---cCCCcEEEe
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANK---FGFPRFVFY 55 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~---lgIP~i~~~ 55 (395)
.-.+++++. +||+||.|..++ -|..+++. .++|+|+++
T Consensus 44 eAl~~~~~~-~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lT 86 (123)
T 2lpm_A 44 EALDIARKG-QFDIAIIDVNLDGEPSYPVADILAERNVPFIFAT 86 (123)
T ss_dssp HHHHHHHHC-CSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBC
T ss_pred HHHHHHHhC-CCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEe
Confidence 334556666 999999999887 55666644 578876554
No 66
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=65.48 E-value=55 Score=26.79 Aligned_cols=146 Identities=15% Similarity=0.177 Sum_probs=78.8
Q ss_pred CCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHH---hcCCCeEEecCCCHHHHhcccCccc
Q 048238 191 GSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEER---VKGRGLVVRDWVNQKEILWHESVQG 267 (395)
Q Consensus 191 ~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~pq~~ll~~~~~~~ 267 (395)
-+|.|-|-+||.+ +.+..++....|+..|..+-..+-+. ...|+.+.+. ....+ ++.
T Consensus 10 ~~~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~Sa-HR~p~~l~~~~~~a~~~g-----------------~~V 69 (170)
T 1xmp_A 10 MKSLVGVIMGSTS--DWETMKYACDILDELNIPYEKKVVSA-HRTPDYMFEYAETARERG-----------------LKV 69 (170)
T ss_dssp -CCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCT-TTSHHHHHHHHHHTTTTT-----------------CCE
T ss_pred CCCcEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEec-cCCHHHHHHHHHHHHhCC-----------------CcE
Confidence 4788889899986 55777788888888887765444332 2344433221 11111 223
Q ss_pred eeecCCchhHHHHHh---cCCcEEeccCCCc--hhHHHH-HHhh--hhceEEEeeccCCCCcCccCHHHHHHHHHHHhCC
Q 048238 268 FLSHCGWNSALESIC---AGVPILAWPIMAD--QPLNAR-MVTE--EIKVALRVETCDGSVRGFVKWQGLEKTVRELMGG 339 (395)
Q Consensus 268 ~IthgG~~s~~Ea~~---~GvP~i~~P~~~D--Q~~na~-~v~~--~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~ 339 (395)
+|.=.|...-+-++. .-.|+|.+|.... .-..+. -+.+ . |+.+..-.. ++.+..++..++..|.. +.|
T Consensus 70 iIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~daLlSivqmP~-GvpVatV~I--~~a~~~nAallAaqIla-~~d 145 (170)
T 1xmp_A 70 IIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPG-GVPVATVAI--GKAGSTNAGLLAAQILG-SFH 145 (170)
T ss_dssp EEEEEESSCCHHHHHHTTCCSCEEEEEECCTTTTTHHHHHHHHCCCT-TCCCEECCS--SHHHHHHHHHHHHHHHH-TTC
T ss_pred EEEECCchhhhHHHHHhccCCCEEEeeCCCCCCCcHHHHHHHhcCCC-CCeeEEEec--CCcchHHHHHHHHHHHc-cCC
Confidence 777766543333333 4689999998432 222322 2234 4 554322110 00023455556655542 356
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhC
Q 048238 340 EKGEKARTKVKELSEIARKAMEEE 363 (395)
Q Consensus 340 ~~~~~~~~~a~~l~~~~~~~~~~~ 363 (395)
+ .++++.+.+++..++.+.+.
T Consensus 146 ~---~l~~kl~~~r~~~~~~v~~~ 166 (170)
T 1xmp_A 146 D---DIHDALELRREAIEKDVREG 166 (170)
T ss_dssp H---HHHHHHHHHHHHHHHHHHC-
T ss_pred H---HHHHHHHHHHHHHHHHHHhc
Confidence 6 68888888887776554443
No 67
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=64.01 E-value=6.9 Score=30.81 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=29.3
Q ss_pred HHHHhcCCCccEEEECCchh--hHHHHHHHc-------CCCcEEEecchH
Q 048238 19 ERALESLPHVSFMVSDGFLW--WTLDSANKF-------GFPRFVFYGMNN 59 (395)
Q Consensus 19 ~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-------gIP~i~~~~~~~ 59 (395)
.+.+++. +||+||.|..++ -|..+++.+ .+|.+.++....
T Consensus 50 l~~~~~~-~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~~ 98 (134)
T 3to5_A 50 LPMLKKG-DFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAK 98 (134)
T ss_dssp HHHHHHH-CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSCC
T ss_pred HHHHHhC-CCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCCC
Confidence 3445565 899999999888 677777654 488888876543
No 68
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=62.69 E-value=51 Score=27.05 Aligned_cols=144 Identities=13% Similarity=0.162 Sum_probs=74.6
Q ss_pred CCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHH---HhcCCCeEEecCCCHHHHhcccCccc
Q 048238 191 GSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEE---RVKGRGLVVRDWVNQKEILWHESVQG 267 (395)
Q Consensus 191 ~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~pq~~ll~~~~~~~ 267 (395)
+.|.|-|-+||.+ +....++....|+..|..+-..+-+. ...|+.+.+ .....+ ++.
T Consensus 11 ~~P~V~IimGS~S--D~~v~~~a~~~l~~~gi~~ev~V~sa-HR~p~~l~~~~~~a~~~g-----------------~~V 70 (173)
T 4grd_A 11 SAPLVGVLMGSSS--DWDVMKHAVAILQEFGVPYEAKVVSA-HRMPDEMFDYAEKARERG-----------------LRA 70 (173)
T ss_dssp SSCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCT-TTSHHHHHHHHHHHTTTT-----------------CSE
T ss_pred CCCeEEEEeCcHh--HHHHHHHHHHHHHHcCCCEEEEEEcc-ccCHHHHHHHHHHHHhcC-----------------CeE
Confidence 4677888899886 55677778888888887764444332 234443322 111222 223
Q ss_pred eeecCCch----hHHHHHhcCCcEEeccCCCc---hhHHHHHHhhhh-ceEEEeeccCCCCcCccCHHHHHHHHHHHhCC
Q 048238 268 FLSHCGWN----SALESICAGVPILAWPIMAD---QPLNARMVTEEI-KVALRVETCDGSVRGFVKWQGLEKTVRELMGG 339 (395)
Q Consensus 268 ~IthgG~~----s~~Ea~~~GvP~i~~P~~~D---Q~~na~~v~~~l-g~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~ 339 (395)
+|.-.|.- ++.-+ ..-+|+|.+|.... -..--..+++.. |+.+..-.. ++.+..+..-++..|-. +.|
T Consensus 71 iIa~AG~aahLpgvvA~-~t~~PVIgVPv~~~~l~G~dsLlSivqMP~Gvpvatv~i--~~~~a~NAallA~~ILa-~~d 146 (173)
T 4grd_A 71 IIAGAGGAAHLPGMLAA-KTTVPVLGVPVASKYLKGVDSLHSIVQMPKGVPVATFAI--GEAGAANAALFAVSILS-GNS 146 (173)
T ss_dssp EEEEEESSCCHHHHHHH-HCCSCEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCS--SHHHHHHHHHHHHHHHT-TSC
T ss_pred EEEeccccccchhhhee-cCCCCEEEEEcCCCCCCchhHHHHHHhCCCCCCceEEec--CCcchHHHHHHHHHHHc-CCC
Confidence 66655543 33333 45799999997432 222112222321 444332210 00122334444443321 346
Q ss_pred ChhHHHHHHHHHHHHHHHHhhh
Q 048238 340 EKGEKARTKVKELSEIARKAME 361 (395)
Q Consensus 340 ~~~~~~~~~a~~l~~~~~~~~~ 361 (395)
+ .++++.+++++..++.+.
T Consensus 147 ~---~l~~kl~~~r~~~~~~v~ 165 (173)
T 4grd_A 147 V---DYANRLAAFRVRQNEAAH 165 (173)
T ss_dssp H---HHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHH
Confidence 6 688888887777765443
No 69
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=61.64 E-value=11 Score=28.24 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=28.6
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHHc-------CCCcEEEecchH
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANKF-------GFPRFVFYGMNN 59 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-------gIP~i~~~~~~~ 59 (395)
...+.+++. +||+||.|..++ -+..+.+.+ ++|.++++....
T Consensus 37 ~al~~l~~~-~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~ 87 (122)
T 3gl9_A 37 IALEKLSEF-TPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGG 87 (122)
T ss_dssp HHHHHHTTB-CCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCS
T ss_pred HHHHHHHhc-CCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCCc
Confidence 344556666 899999998776 455555543 588888876543
No 70
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=59.24 E-value=25 Score=33.88 Aligned_cols=150 Identities=11% Similarity=-0.005 Sum_probs=76.4
Q ss_pred CCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCHHHHhcccCccceee
Q 048238 191 GSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQKEILWHESVQGFLS 270 (395)
Q Consensus 191 ~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~It 270 (395)
+++++.|..|..+ ...+..|.+.|..+.++... ....+.+.....++....-..+...|..+++ +|.
T Consensus 12 ~~~vlVvGgG~va-------~~k~~~L~~~ga~V~vi~~~----~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~l--Vi~ 78 (457)
T 1pjq_A 12 DRDCLIVGGGDVA-------ERKARLLLEAGARLTVNALT----FIPQFTVWANEGMLTLVEGPFDETLLDSCWL--AIA 78 (457)
T ss_dssp TCEEEEECCSHHH-------HHHHHHHHHTTBEEEEEESS----CCHHHHHHHTTTSCEEEESSCCGGGGTTCSE--EEE
T ss_pred CCEEEEECCCHHH-------HHHHHHHHhCcCEEEEEcCC----CCHHHHHHHhcCCEEEEECCCCccccCCccE--EEE
Confidence 4667777766655 34456667788887777653 2233433333234433222223344566676 888
Q ss_pred cCCchh-----HHHHHhcCCcEE--eccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHhCCChhH
Q 048238 271 HCGWNS-----ALESICAGVPIL--AWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGEKGE 343 (395)
Q Consensus 271 hgG~~s-----~~Ea~~~GvP~i--~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~ 343 (395)
.-|--. ..+|-..|+|+- --|-..+..+-| .+.+. ++=+.+..+ -.+..-...|++.|...+... ..
T Consensus 79 at~~~~~n~~i~~~a~~~~i~vn~~d~~e~~~~~~pa-~~~~~-~l~iaIsT~---Gksp~la~~ir~~ie~~l~~~-~~ 152 (457)
T 1pjq_A 79 ATDDDTVNQRVSDAAESRRIFCNVVDAPKAASFIMPS-IIDRS-PLMVAVSSG---GTSPVLARLLREKLESLLPQH-LG 152 (457)
T ss_dssp CCSCHHHHHHHHHHHHHTTCEEEETTCTTSSSEECCE-EEEET-TEEEEEECT---TSCHHHHHHHHHHHHHHSCTT-HH
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEECCCcccCceEeee-EEEeC-CeEEEEECC---CCChHHHHHHHHHHHHhcchh-HH
Confidence 777654 334556789863 333222222111 01112 333334431 011222456777777777542 23
Q ss_pred HHHHHHHHHHHHHHHh
Q 048238 344 KARTKVKELSEIARKA 359 (395)
Q Consensus 344 ~~~~~a~~l~~~~~~~ 359 (395)
.+.+.+.++++.+++.
T Consensus 153 ~~~~~~~~~R~~~~~~ 168 (457)
T 1pjq_A 153 QVARYAGQLRARVKKQ 168 (457)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5666666666666643
No 71
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=57.79 E-value=69 Score=26.89 Aligned_cols=99 Identities=11% Similarity=0.082 Sum_probs=53.8
Q ss_pred CchHHHHHhhhccCCCCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEe--cC
Q 048238 176 SKPAWIRWLDRKLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVR--DW 253 (395)
Q Consensus 176 ~~~~l~~~l~~~~~~~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 253 (395)
.-.++-++|.+. ...+|+.|..+. ..+..++....+-.++=++... .+. ..+ ..+.+. ..
T Consensus 46 ~A~~lg~~LA~~-----G~~vVsGg~~Gi-----M~aa~~gAl~~GG~~iGVlP~e-~~~-~~~------~~~~~~~~~~ 107 (195)
T 1rcu_A 46 ICLELGRTLAKK-----GYLVFNGGRDGV-----MELVSQGVREAGGTVVGILPDE-EAG-NPY------LSVAVKTGLD 107 (195)
T ss_dssp HHHHHHHHHHHT-----TCEEEECCSSHH-----HHHHHHHHHHTTCCEEEEESTT-CCC-CTT------CSEEEECCCC
T ss_pred HHHHHHHHHHHC-----CCEEEeCCHHHH-----HHHHHHHHHHcCCcEEEEeCCc-ccC-CCC------cceeeecCCC
Confidence 345566666654 566777555543 3344444445555555555431 111 111 223332 23
Q ss_pred CC-HHHHhcccCccceeecCCchhHHHH---HhcCCcEEeccC
Q 048238 254 VN-QKEILWHESVQGFLSHCGWNSALES---ICAGVPILAWPI 292 (395)
Q Consensus 254 ~p-q~~ll~~~~~~~~IthgG~~s~~Ea---~~~GvP~i~~P~ 292 (395)
.+ ...++..-+-..++--||.||+.|+ +.+++|+++++.
T Consensus 108 f~~Rk~~m~~~sda~IvlpGG~GTL~E~~eal~~~kPV~lln~ 150 (195)
T 1rcu_A 108 FQMRSFVLLRNADVVVSIGGEIGTAIEILGAYALGKPVILLRG 150 (195)
T ss_dssp HHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHHTTCCEEEETT
T ss_pred HHHHHHHHHHhCCEEEEecCCCcHHHHHHHHHhcCCCEEEECC
Confidence 34 3445444333467778899987765 679999999963
No 72
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=54.54 E-value=55 Score=26.92 Aligned_cols=145 Identities=11% Similarity=0.131 Sum_probs=75.1
Q ss_pred CCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCHHHHhcccCccceee
Q 048238 191 GSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQKEILWHESVQGFLS 270 (395)
Q Consensus 191 ~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~It 270 (395)
.++.|-|-+||.+ +....++....|+..+..+-..+-+. ...|+.+.+..+ . .--...++ ||.
T Consensus 6 ~~~~V~IimgS~S--D~~v~~~a~~~L~~~gi~~ev~V~Sa-HR~p~~~~~~~~-----------~-a~~~g~~V--iIa 68 (174)
T 3lp6_A 6 ERPRVGVIMGSDS--DWPVMADAAAALAEFDIPAEVRVVSA-HRTPEAMFSYAR-----------G-AAARGLEV--IIA 68 (174)
T ss_dssp CCCSEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECCT-TTCHHHHHHHHH-----------H-HHHHTCCE--EEE
T ss_pred CCCeEEEEECcHH--hHHHHHHHHHHHHHcCCCEEEEEECC-CCCHHHHHHHHH-----------H-HHhCCCCE--EEE
Confidence 3566778888876 55677788888888887765444332 224433322110 0 00012223 777
Q ss_pred cCCchhHHHHH---hcCCcEEeccCCCc--hhHHHH-HHhhh-hceEEEeeccCCCCcCccCHHHHHHHHHHHhCCChhH
Q 048238 271 HCGWNSALESI---CAGVPILAWPIMAD--QPLNAR-MVTEE-IKVALRVETCDGSVRGFVKWQGLEKTVRELMGGEKGE 343 (395)
Q Consensus 271 hgG~~s~~Ea~---~~GvP~i~~P~~~D--Q~~na~-~v~~~-lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~ 343 (395)
-.|...-+-++ ..-.|+|.+|...- .-..+. -+.+. -|+.+..-. .++..++..++..|-. +.|+
T Consensus 69 ~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~daLlS~vqmp~GvpVatV~----I~~~~nAa~lAa~Il~-~~d~--- 140 (174)
T 3lp6_A 69 GAGGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVS----IGGAGNAGLLAVRMLG-AANP--- 140 (174)
T ss_dssp EEESSCCHHHHHHHHCSSCEEEEEECCSSGGGHHHHHHHHCCCTTCCCEECC----TTCHHHHHHHHHHHHH-TTCH---
T ss_pred ecCchhhhHHHHHhccCCCEEEeeCCCCCCCCHHHHHHHhhCCCCCeeEEEE----cCcchHHHHHHHHHHh-CCCH---
Confidence 76654333222 35689999998522 122222 11121 143222211 0134555556555533 3566
Q ss_pred HHHHHHHHHHHHHHHhh
Q 048238 344 KARTKVKELSEIARKAM 360 (395)
Q Consensus 344 ~~~~~a~~l~~~~~~~~ 360 (395)
.++++.+.+++..++.+
T Consensus 141 ~l~~kl~~~r~~~~~~v 157 (174)
T 3lp6_A 141 QLRARIVAFQDRLADVV 157 (174)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68888888777776543
No 73
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=54.16 E-value=17 Score=27.69 Aligned_cols=42 Identities=7% Similarity=0.037 Sum_probs=28.1
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHHc-------CCCcEEEecchH
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANKF-------GFPRFVFYGMNN 59 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-------gIP~i~~~~~~~ 59 (395)
...+.+++. +||+||.|..++ -+..+++.+ .+|.++++....
T Consensus 39 ~al~~~~~~-~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~~ 89 (136)
T 3t6k_A 39 EALQQIYKN-LPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQGD 89 (136)
T ss_dssp HHHHHHHHS-CCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTTC
T ss_pred HHHHHHHhC-CCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCCC
Confidence 344556666 899999998766 455555432 588888776543
No 74
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=53.85 E-value=20 Score=26.55 Aligned_cols=43 Identities=12% Similarity=0.200 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCccEEEECCchh--hHHHHHHH----cCCCcEEEecchH
Q 048238 16 PHFERALESLPHVSFMVSDGFLW--WTLDSANK----FGFPRFVFYGMNN 59 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~----lgIP~i~~~~~~~ 59 (395)
....+.+++. +||+||.|..++ -+..+++. .++|.++++....
T Consensus 36 ~~al~~~~~~-~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~~ 84 (120)
T 3f6p_A 36 NEAVEMVEEL-QPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKDS 84 (120)
T ss_dssp HHHHHHHHTT-CCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESSC
T ss_pred HHHHHHHhhC-CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCCC
Confidence 3445556666 899999998766 34444433 4688887766543
No 75
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=52.63 E-value=69 Score=27.35 Aligned_cols=44 Identities=9% Similarity=0.005 Sum_probs=29.1
Q ss_pred eEEecCCCH-HHHh-cccCccceeecCCchhHHHHH---------hcCCcEEeccC
Q 048238 248 LVVRDWVNQ-KEIL-WHESVQGFLSHCGWNSALESI---------CAGVPILAWPI 292 (395)
Q Consensus 248 ~~~~~~~pq-~~ll-~~~~~~~~IthgG~~s~~Ea~---------~~GvP~i~~P~ 292 (395)
+.+...++. ..++ ..++ ..++--||.||+-|.+ .+++|++.+-.
T Consensus 89 ~~~~~~~~~Rk~~~~~~sd-a~I~lpGG~GTLdElfE~lt~~qlg~~~kPvvll~~ 143 (216)
T 1ydh_A 89 VRVVADMHERKAAMAQEAE-AFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNV 143 (216)
T ss_dssp EEEESSHHHHHHHHHHHCS-EEEECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECG
T ss_pred ccccCCHHHHHHHHHHhCC-EEEEeCCCccHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 445455553 3344 3444 4577789999988876 47999998853
No 76
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=51.96 E-value=46 Score=25.36 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=22.8
Q ss_pred CCCeeEEEecccccCCHHHHHHHHHHHHhCCCcE
Q 048238 191 GSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNF 224 (395)
Q Consensus 191 ~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~ 224 (395)
.+.+|+|+.||........+..+...++.....+
T Consensus 5 ~~alllv~HGS~~~~~~~~~~~l~~~l~~~~~~V 38 (126)
T 3lyh_A 5 PHQIILLAHGSSDARWCETFEKLAEPTVESIENA 38 (126)
T ss_dssp CEEEEEEECCCSCHHHHHHHHHHHHHHHHHSTTC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHHhhcCCE
Confidence 3579999999975433456777777776533333
No 77
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=49.69 E-value=17 Score=28.16 Aligned_cols=40 Identities=15% Similarity=0.054 Sum_probs=27.0
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHHc---------CCCcEEEecc
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANKF---------GFPRFVFYGM 57 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l---------gIP~i~~~~~ 57 (395)
...+.+++. +||+||.|..++ -+..+++.+ .+|.++++..
T Consensus 49 ~al~~~~~~-~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~ 99 (143)
T 3m6m_D 49 QVLDAMAEE-DYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSAD 99 (143)
T ss_dssp HHHHHHHHS-CCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESC
T ss_pred HHHHHHhcC-CCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCC
Confidence 344556666 899999998766 455555443 2788877664
No 78
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=49.37 E-value=1.1e+02 Score=25.28 Aligned_cols=147 Identities=16% Similarity=0.184 Sum_probs=76.5
Q ss_pred CCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCHHHHhcccCccceee
Q 048238 191 GSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQKEILWHESVQGFLS 270 (395)
Q Consensus 191 ~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~It 270 (395)
.-|.|-|-+||.+ +....++....|+..|.++-..+-+. ...|+.+.+-... .....++.+|.
T Consensus 12 ~~~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~Sa-HR~p~~l~~~~~~--------------a~~~g~~ViIa 74 (183)
T 1o4v_A 12 HVPRVGIIMGSDS--DLPVMKQAAEILEEFGIDYEITIVSA-HRTPDRMFEYAKN--------------AEERGIEVIIA 74 (183)
T ss_dssp --CEEEEEESCGG--GHHHHHHHHHHHHHTTCEEEEEECCT-TTCHHHHHHHHHH--------------TTTTTCCEEEE
T ss_pred CCCeEEEEeccHH--HHHHHHHHHHHHHHcCCCeEEEEEcc-cCCHHHHHHHHHH--------------HHhCCCcEEEE
Confidence 3578888889886 56777888888888888765544432 2344433221100 00011223777
Q ss_pred cCCch----hHHHHHhcCCcEEeccCCC--chhHHHHHHhhhh--ceEEEeeccCCCCcCccCHHHHHHHHHHHhCCChh
Q 048238 271 HCGWN----SALESICAGVPILAWPIMA--DQPLNARMVTEEI--KVALRVETCDGSVRGFVKWQGLEKTVRELMGGEKG 342 (395)
Q Consensus 271 hgG~~----s~~Ea~~~GvP~i~~P~~~--DQ~~na~~v~~~l--g~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 342 (395)
=.|.. ++.-+ ..-.|+|.+|... -.-.++..-.-.. |+.+..-. .++..++..++..|.. +.|+
T Consensus 75 ~AG~aa~LpgvvA~-~t~~PVIgVP~~~~~l~G~dsLlSivqmP~GvpVatV~----Id~~~nAa~lAaqIla-~~d~-- 146 (183)
T 1o4v_A 75 GAGGAAHLPGMVAS-ITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVA----INNAKNAGILAASILG-IKYP-- 146 (183)
T ss_dssp EEESSCCHHHHHHH-HCSSCEEEEEECCTTTTTHHHHHHHHTCCTTCCCEECC----TTCHHHHHHHHHHHHH-TTCH--
T ss_pred ecCcccccHHHHHh-ccCCCEEEeeCCCCCCCcHHHHHHHhcCCCCCeeEEEe----cCCchHHHHHHHHHHh-cCCH--
Confidence 66653 33333 3678999999843 2233332111111 43322211 0134566666655543 3566
Q ss_pred HHHHHHHHHHHHHHHHhhhhC
Q 048238 343 EKARTKVKELSEIARKAMEEE 363 (395)
Q Consensus 343 ~~~~~~a~~l~~~~~~~~~~~ 363 (395)
.++++.+..++...+.+.+.
T Consensus 147 -~l~~kL~~~r~~~~~~v~~~ 166 (183)
T 1o4v_A 147 -EIARKVKEYKERMKREVLEK 166 (183)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHH
Confidence 67777777777666443333
No 79
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=49.09 E-value=1.1e+02 Score=25.03 Aligned_cols=142 Identities=15% Similarity=0.182 Sum_probs=73.8
Q ss_pred CCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHH---hcCCCeEEecCCCHHHHhcccCccce
Q 048238 192 SSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEER---VKGRGLVVRDWVNQKEILWHESVQGF 268 (395)
Q Consensus 192 ~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~pq~~ll~~~~~~~~ 268 (395)
++.|-|-+||.+ +....++....|+..|..+-..+-+. ...|+.+.+. ....+ ++.|
T Consensus 6 ~~~V~IimgS~S--D~~v~~~a~~~l~~~gi~~ev~V~Sa-HR~p~~~~~~~~~a~~~g-----------------~~Vi 65 (169)
T 3trh_A 6 KIFVAILMGSDS--DLSTMETAFTELKSLGIPFEAHILSA-HRTPKETVEFVENADNRG-----------------CAVF 65 (169)
T ss_dssp CCEEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECCT-TTSHHHHHHHHHHHHHTT-----------------EEEE
T ss_pred CCcEEEEECcHH--hHHHHHHHHHHHHHcCCCEEEEEEcc-cCCHHHHHHHHHHHHhCC-----------------CcEE
Confidence 456777788876 55677788888888887765544332 2244333221 11122 2227
Q ss_pred eecCCchhHHHHH---hcCCcEEeccCCCch--hHHH-HHHhh--hhceEEEeeccCCCCcCccCHHHHHHHHHHHhCCC
Q 048238 269 LSHCGWNSALESI---CAGVPILAWPIMADQ--PLNA-RMVTE--EIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGE 340 (395)
Q Consensus 269 IthgG~~s~~Ea~---~~GvP~i~~P~~~DQ--~~na-~~v~~--~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~ 340 (395)
|.-.|...-+-++ ..-.|+|.+|...-. -..+ .-+.+ . |+.+..-.. ++.+.+++..++..|-. +.|+
T Consensus 66 Ia~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlS~vqmp~-GvPVatV~I--~~a~~~nAa~lAa~Il~-~~d~ 141 (169)
T 3trh_A 66 IAAAGLAAHLAGTIAAHTLKPVIGVPMAGGSLGGLDALLSTVQMPG-GVPVACTAI--GKAGAKNAAILAAQIIA-LQDK 141 (169)
T ss_dssp EEEECSSCCHHHHHHHTCSSCEEEEECCCSTTTTHHHHHHHHCCCT-TSCCEECCS--THHHHHHHHHHHHHHHH-TTCH
T ss_pred EEECChhhhhHHHHHhcCCCCEEEeecCCCCCCCHHHHHHhhcCCC-CCceEEEec--CCccchHHHHHHHHHHc-CCCH
Confidence 8777754333332 245899999985321 2222 22223 3 543222110 00022344555554433 3566
Q ss_pred hhHHHHHHHHHHHHHHHHhh
Q 048238 341 KGEKARTKVKELSEIARKAM 360 (395)
Q Consensus 341 ~~~~~~~~a~~l~~~~~~~~ 360 (395)
.++++.+..++..++.+
T Consensus 142 ---~l~~kl~~~r~~~~~~v 158 (169)
T 3trh_A 142 ---SIAQKLVQQRTAKRETL 158 (169)
T ss_dssp ---HHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHH
Confidence 67777777777766443
No 80
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=48.24 E-value=59 Score=27.75 Aligned_cols=102 Identities=11% Similarity=0.013 Sum_probs=51.5
Q ss_pred hHHHHHhhhccCCCCCeeEEEeccc-ccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCH
Q 048238 178 PAWIRWLDRKLDEGSSVMYVAFGSQ-AEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQ 256 (395)
Q Consensus 178 ~~l~~~l~~~~~~~~~vv~vs~Gs~-~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq 256 (395)
.++-++|.+. +..+|+.|.. +. ..+..++....+-.+|=++... ..+.++... ......+...+++
T Consensus 35 ~~lg~~LA~~-----G~~vVsGGg~~Gi-----M~aa~~gAl~~GG~tiGVlP~~--~~~~e~~~~-~~~~~~~~~~f~~ 101 (215)
T 2a33_A 35 VDLGNELVSR-----NIDLVYGGGSIGL-----MGLVSQAVHDGGRHVIGIIPKT--LMPRELTGE-TVGEVRAVADMHQ 101 (215)
T ss_dssp HHHHHHHHHT-----TCEEEECCCSSHH-----HHHHHHHHHHTTCCEEEEEESS--CC---------CCEEEEESSHHH
T ss_pred HHHHHHHHHC-----CCEEEECCChhhH-----hHHHHHHHHHcCCcEEEEcchH--hcchhhccC-CCCceeecCCHHH
Confidence 3445555553 5667777764 43 2333444444444444344331 011111000 0012344455564
Q ss_pred -HHHhcccCccceeecCCchhHHHHHh---------cCCcEEeccC
Q 048238 257 -KEILWHESVQGFLSHCGWNSALESIC---------AGVPILAWPI 292 (395)
Q Consensus 257 -~~ll~~~~~~~~IthgG~~s~~Ea~~---------~GvP~i~~P~ 292 (395)
..++..-+-..++--||.||+-|.+. +++|++.+-.
T Consensus 102 Rk~~~~~~sda~VvlpGG~GTLdElfE~lt~~qlg~~~kPvvll~~ 147 (215)
T 2a33_A 102 RKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 147 (215)
T ss_dssp HHHHHHHTCSEEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECG
T ss_pred HHHHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhCCCCCCeEEecC
Confidence 33544444456778899999988863 4899998754
No 81
>2xws_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; 1.60A {Archaeoglobus fulgidus} PDB: 2dj5_A* 2xwq_A
Probab=46.79 E-value=52 Score=25.19 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=23.7
Q ss_pred CCeeEEEecccccCCHHHHHHHHHHHHhC-C-CcEEEE
Q 048238 192 SSVMYVAFGSQAEISAQQLKEIATGLEQS-K-VNFLWV 227 (395)
Q Consensus 192 ~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~-~-~~~i~~ 227 (395)
..+|+++.||........+..++..+++. + ..+.+.
T Consensus 4 ~alllv~HGS~~~~~~~~~~~la~~l~~~~~~~~V~~a 41 (133)
T 2xws_A 4 RGLVIVGHGSQLNHYREVMELHRKRIEESGAFDEVKIA 41 (133)
T ss_dssp EEEEEEECSCCCHHHHHHHHHHHHHHHHHTSSSEEEEE
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHhhCCCCcEEee
Confidence 46899999997543445677787777652 3 444444
No 82
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=45.15 E-value=14 Score=32.57 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=26.2
Q ss_pred HHHHHhcCCCccEEEE----------CCchhhHHH---HHHHcCCCcEEEec
Q 048238 18 FERALESLPHVSFMVS----------DGFLWWTLD---SANKFGFPRFVFYG 56 (395)
Q Consensus 18 l~~~l~~~~kpD~vI~----------D~~~~~~~~---~A~~lgIP~i~~~~ 56 (395)
+..++.+. +||+||+ |.+.+.+.. -|..+|||.|.++.
T Consensus 77 l~~~l~~~-~PDLVvSGIN~G~N~g~dv~ySGTVgAA~Ea~~~GipaIA~S~ 127 (251)
T 2wqk_A 77 YRVILEEK-KPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSA 127 (251)
T ss_dssp HHTTTTTC-CCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred hhhhcCCC-CCCEEEeCccCCCccccceecchHHHHHHHHHhcCCCeEEEEc
Confidence 33445565 8999998 555554443 44678999999975
No 83
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=44.54 E-value=33 Score=29.08 Aligned_cols=47 Identities=13% Similarity=0.120 Sum_probs=32.7
Q ss_pred HHHHHhhhccCCCCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEE
Q 048238 179 AWIRWLDRKLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWV 227 (395)
Q Consensus 179 ~l~~~l~~~~~~~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~ 227 (395)
-+.+|+... ..+.++||-.+|......+.+....++|++.|+.+.+.
T Consensus 17 ~~~~f~~~~--~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~ 63 (206)
T 3l4e_A 17 LFTEFESNL--QGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEEL 63 (206)
T ss_dssp HHHHHSCCC--TTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHc--CCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 345565332 34678999888775444567888999999999876554
No 84
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=44.54 E-value=85 Score=26.13 Aligned_cols=103 Identities=14% Similarity=0.059 Sum_probs=54.1
Q ss_pred chHHHHHhhhccCCCCCeeEEEeccc-ccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCC
Q 048238 177 KPAWIRWLDRKLDEGSSVMYVAFGSQ-AEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVN 255 (395)
Q Consensus 177 ~~~l~~~l~~~~~~~~~vv~vs~Gs~-~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 255 (395)
-.++-++|.+. ...+|+.|.. +. ..+..++....+-.++=+.... +...-.....-...++....+
T Consensus 22 A~~lg~~La~~-----g~~lV~GGg~~Gi-----M~aa~~gA~~~gG~~iGv~p~~---l~~~e~~~~~~~~~~~~~~~~ 88 (191)
T 1t35_A 22 AAELGVYMAEQ-----GIGLVYGGSRVGL-----MGTIADAIMENGGTAIGVMPSG---LFSGEVVHQNLTELIEVNGMH 88 (191)
T ss_dssp HHHHHHHHHHT-----TCEEEECCCCSHH-----HHHHHHHHHTTTCCEEEEEETT---CCHHHHTTCCCSEEEEESHHH
T ss_pred HHHHHHHHHHC-----CCEEEECCCcccH-----HHHHHHHHHHcCCeEEEEeCch---hcccccccCCCCccccCCCHH
Confidence 34455566554 5677777765 42 3444455555555544444331 111000000012233445555
Q ss_pred H-HHHhcccCccceeecCCchhHHHH---H------hcCCcEEeccC
Q 048238 256 Q-KEILWHESVQGFLSHCGWNSALES---I------CAGVPILAWPI 292 (395)
Q Consensus 256 q-~~ll~~~~~~~~IthgG~~s~~Ea---~------~~GvP~i~~P~ 292 (395)
. ..++...+-..++--||.||+-|. + .+++|++.+-.
T Consensus 89 ~Rk~~~~~~sda~IvlPGG~GTl~El~e~lt~~q~g~~~kPvvll~~ 135 (191)
T 1t35_A 89 ERKAKMSELADGFISMPGGFGTYEELFEVLCWAQIGIHQKPIGLYNV 135 (191)
T ss_dssp HHHHHHHHHCSEEEECSCCHHHHHHHHHHHHTTSCSSCCCCEEEECG
T ss_pred HHHHHHHHHCCEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEecC
Confidence 3 345544444567888999998776 4 27899998854
No 85
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=43.53 E-value=30 Score=26.21 Aligned_cols=40 Identities=10% Similarity=0.132 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHHc-------CCCcEEEecc
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANKF-------GFPRFVFYGM 57 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-------gIP~i~~~~~ 57 (395)
...+.+++. +||+||.|..++ -+..+.+.+ .+|.++++..
T Consensus 38 ~al~~l~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~ 86 (138)
T 3c3m_A 38 ECLEALNAT-PPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAK 86 (138)
T ss_dssp HHHHHHHHS-CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESS
T ss_pred HHHHHHhcc-CCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECC
Confidence 344556666 899999998765 345555433 5787777654
No 86
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=43.41 E-value=1.4e+02 Score=24.53 Aligned_cols=113 Identities=13% Similarity=0.131 Sum_probs=66.1
Q ss_pred CCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCc-c-chhHHHHhcCCCeEE---ecCCCHHHHhcccCcc
Q 048238 192 SSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESE-L-GDGFEERVKGRGLVV---RDWVNQKEILWHESVQ 266 (395)
Q Consensus 192 ~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~-~-~~~~~~~~~~~~~~~---~~~~pq~~ll~~~~~~ 266 (395)
+.+++.-.||+.... ..++++.|.+.|+.+-.+....... + +..+.. ..+ .++. ..|+++.++-..+|+
T Consensus 6 k~IllgvTGs~aa~k---~~~ll~~L~~~g~~V~vv~T~~A~~fi~~~~l~~-l~~-~v~~~~~~~~~~hi~l~~~aD~- 79 (175)
T 3qjg_A 6 ENVLICLCGSVNSIN---ISHYIIELKSKFDEVNVIASTNGRKFINGEILKQ-FCD-NYYDEFEDPFLNHVDIANKHDK- 79 (175)
T ss_dssp CEEEEEECSSGGGGG---HHHHHHHHTTTCSEEEEEECTGGGGGSCHHHHHH-HCS-CEECTTTCTTCCHHHHHHTCSE-
T ss_pred CEEEEEEeCHHHHHH---HHHHHHHHHHCCCEEEEEECcCHHHHhhHHHHHH-hcC-CEEecCCCCccccccccchhCE-
Confidence 456666677776542 4556777777788776666554222 1 222322 222 3322 134566666555554
Q ss_pred ceeecCCchhHHH-------------HHhcCCcEEeccCC----Cc---hhHHHHHHhhhhceEE
Q 048238 267 GFLSHCGWNSALE-------------SICAGVPILAWPIM----AD---QPLNARMVTEEIKVAL 311 (395)
Q Consensus 267 ~~IthgG~~s~~E-------------a~~~GvP~i~~P~~----~D---Q~~na~~v~~~lg~g~ 311 (395)
.+|.-|-+||+.- ++..++|+++.|-. .. ...|...+.+. |+=+
T Consensus 80 ~vVaPaTanTlakiA~GiaDnLlt~~~la~~~pvvl~Pamn~~m~~~p~~~~Nl~~L~~~-G~~i 143 (175)
T 3qjg_A 80 IIILPATSNTINKIANGICDNLLLTICHTAFEKLSIFPNMNLRMWENPVTQNNIRLLKDY-GVSI 143 (175)
T ss_dssp EEEEEECHHHHHHHHTTCCCSHHHHHHHTCGGGEEEEECEEHHHHTCHHHHHHHHHHHHT-TCEE
T ss_pred EEEeeCCHHHHHHHHccccCCHHHHHHHHcCCCEEEEecCChhhhcCHHHHHHHHHHHHC-CCEE
Confidence 5777788776653 36679999999942 22 24577777665 7643
No 87
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=42.47 E-value=34 Score=25.30 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=27.3
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHHc-----CCCcEEEecchH
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANKF-----GFPRFVFYGMNN 59 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~~~ 59 (395)
...+.+++. +||+||.|..++ -+..+++.+ ++|.++++....
T Consensus 38 ~~~~~~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 86 (126)
T 1dbw_A 38 AFLAFAPDV-RNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGD 86 (126)
T ss_dssp HHHHHGGGC-CSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTTC
T ss_pred HHHHHHhcC-CCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 344455666 899999998665 444444433 588888766543
No 88
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=42.37 E-value=33 Score=26.73 Aligned_cols=42 Identities=12% Similarity=0.017 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCccEEEECCchh--hHHHHHHH-------cCCCcEEEecch
Q 048238 16 PHFERALESLPHVSFMVSDGFLW--WTLDSANK-------FGFPRFVFYGMN 58 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~-------lgIP~i~~~~~~ 58 (395)
....+.+++. +||+||.|..+. -+..+++. -.+|.++++...
T Consensus 41 ~~al~~l~~~-~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (154)
T 3gt7_A 41 REAVRFLSLT-RPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILS 91 (154)
T ss_dssp HHHHHHHTTC-CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCC
T ss_pred HHHHHHHHhC-CCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCC
Confidence 3445566666 899999998655 34444433 367888776543
No 89
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=42.36 E-value=40 Score=31.05 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=21.2
Q ss_pred ccCccceeecCCchhH---HHHHhcCCcEEec
Q 048238 262 HESVQGFLSHCGWNSA---LESICAGVPILAW 290 (395)
Q Consensus 262 ~~~~~~~IthgG~~s~---~Ea~~~GvP~i~~ 290 (395)
.||+ +|++||.-+. ..|...|+|+++.
T Consensus 92 ~PDv--Vi~~g~~~s~p~~laA~~~~iP~vih 121 (365)
T 3s2u_A 92 RPVC--VLGLGGYVTGPGGLAARLNGVPLVIH 121 (365)
T ss_dssp CCSE--EEECSSSTHHHHHHHHHHTTCCEEEE
T ss_pred CCCE--EEEcCCcchHHHHHHHHHcCCCEEEE
Confidence 5777 9999998765 4566789999864
No 90
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=41.90 E-value=48 Score=30.40 Aligned_cols=36 Identities=6% Similarity=0.162 Sum_probs=25.4
Q ss_pred CeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcC
Q 048238 193 SVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRK 230 (395)
Q Consensus 193 ~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~ 230 (395)
.++++++|+.+- -..+..++++|.+.|+.|.+.++.
T Consensus 6 ~il~~~~~~~Gh--v~~~~~La~~L~~~GheV~v~~~~ 41 (402)
T 3ia7_A 6 HILFANVQGHGH--VYPSLGLVSELARRGHRITYVTTP 41 (402)
T ss_dssp EEEEECCSSHHH--HHHHHHHHHHHHHTTCEEEEEECH
T ss_pred EEEEEeCCCCcc--cccHHHHHHHHHhCCCEEEEEcCH
Confidence 467777765532 234567888998999999888753
No 91
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=41.69 E-value=1.5e+02 Score=24.92 Aligned_cols=144 Identities=10% Similarity=0.042 Sum_probs=77.9
Q ss_pred CCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccc--h----hH---HHHhcCCCeEEecCC--CHHHHh
Q 048238 192 SSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELG--D----GF---EERVKGRGLVVRDWV--NQKEIL 260 (395)
Q Consensus 192 ~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~--~----~~---~~~~~~~~~~~~~~~--pq~~ll 260 (395)
+.+++.-.||+.... ....+++.|.+.|+.+-.+.......+- . .+ .+...+..+. ..+. ++..+
T Consensus 8 k~I~lgiTGs~aa~~--k~~~ll~~L~~~g~eV~vv~T~~A~~~i~~~~~~~~~~~~l~~l~g~~v~-~~~~~~~hi~~- 83 (201)
T 3lqk_A 8 KHVGFGLTGSHCTYH--EVLPQMERLVELGAKVTPFVTHTVQTTDTKFGESSEWINKIKQITEEPIV-DSMVKAEPFGP- 83 (201)
T ss_dssp CEEEEECCSCGGGGG--GTHHHHHHHHHTTCEEEEECSSCSCCTTCCTTCSCHHHHHHHHHCCSCCB-CSHHHHGGGTT-
T ss_pred CEEEEEEEChHHHHH--HHHHHHHHHhhCCCEEEEEEChhHHHHHHHhhchhHHHHHHHHHhCCCeE-eecCccccccc-
Confidence 556666677765431 2344555555667777666655422211 1 11 1122222221 1111 12222
Q ss_pred cccCccceeecCCchhHHHH----------------HhcCCcEEeccC----CCchhHHHHHHhhhhceEEEeeccCCCC
Q 048238 261 WHESVQGFLSHCGWNSALES----------------ICAGVPILAWPI----MADQPLNARMVTEEIKVALRVETCDGSV 320 (395)
Q Consensus 261 ~~~~~~~~IthgG~~s~~Ea----------------~~~GvP~i~~P~----~~DQ~~na~~v~~~lg~g~~~~~~~~~~ 320 (395)
+...-..+|.-|-+||+.-. +..++|+++.|- ...++.|...+.+. |+=+.....+++.
T Consensus 84 s~~aD~mvIaP~TanTlAkiA~GiaDnLlt~aa~~~Lk~~~plvl~Pamn~~m~~h~~Nm~~L~~~-G~~i~~P~~~~~~ 162 (201)
T 3lqk_A 84 KTPLDCMVIAPMTGNSTSKFANAMTDSPVLMGAKATLRNGKPVVVGISTNDALGLNGINIMRLMAT-KNIYFIPFGQDNP 162 (201)
T ss_dssp TSCCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHHHHTTCCEEEEEEETTTTTTTHHHHHHHHTS-TTEEECCEEESCT
T ss_pred ccccCEEEEccCCHHHHHHHHCcccCcHHHHHHHHHhhcCCCEEEEECCChhHHHhHHHHHHHHHC-CCEEECCCCcccc
Confidence 22222457888877765432 446999999986 56788899999766 8765543311011
Q ss_pred cC-----ccCHHHHHHHHHHHhCCC
Q 048238 321 RG-----FVKWQGLEKTVRELMGGE 340 (395)
Q Consensus 321 ~~-----~~~~~~l~~~i~~~l~~~ 340 (395)
.. ..+.+.|.+.|.+.+++.
T Consensus 163 ~~~p~s~~a~~~~i~~tv~~al~~~ 187 (201)
T 3lqk_A 163 QVKPNSLVARMEALPETIEAALRGQ 187 (201)
T ss_dssp TTCTTCEEECGGGHHHHHHHHHTTC
T ss_pred ccCCCcccCCHHHHHHHHHHHHhcC
Confidence 11 245578899999988754
No 92
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=41.40 E-value=20 Score=31.64 Aligned_cols=54 Identities=9% Similarity=0.191 Sum_probs=38.8
Q ss_pred ccCccceeecCCchhHHHHHhc---CCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHhC
Q 048238 262 HESVQGFLSHCGWNSALESICA---GVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMG 338 (395)
Q Consensus 262 ~~~~~~~IthgG~~s~~Ea~~~---GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~ 338 (395)
.+++ +|+-||=||+.+++.. ++|+++++.. . +|.. ..+.++++.++++.+++
T Consensus 41 ~~D~--vv~~GGDGTll~~a~~~~~~~PilGIn~G------------~--~Gfl---------~~~~~~~~~~al~~i~~ 95 (258)
T 1yt5_A 41 TADL--IVVVGGDGTVLKAAKKAADGTPMVGFKAG------------R--LGFL---------TSYTLDEIDRFLEDLRN 95 (258)
T ss_dssp CCSE--EEEEECHHHHHHHHTTBCTTCEEEEEESS------------S--CCSS---------CCBCGGGHHHHHHHHHT
T ss_pred CCCE--EEEEeCcHHHHHHHHHhCCCCCEEEEECC------------C--CCcc---------CcCCHHHHHHHHHHHHc
Confidence 4566 9999999999999876 8899988632 0 1211 12457788888888876
Q ss_pred CC
Q 048238 339 GE 340 (395)
Q Consensus 339 ~~ 340 (395)
++
T Consensus 96 g~ 97 (258)
T 1yt5_A 96 WN 97 (258)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 93
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=40.72 E-value=38 Score=25.13 Aligned_cols=43 Identities=16% Similarity=0.056 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCccEEEECCchh--hHHHHHHH-----cCCCcEEEecchH
Q 048238 16 PHFERALESLPHVSFMVSDGFLW--WTLDSANK-----FGFPRFVFYGMNN 59 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~-----lgIP~i~~~~~~~ 59 (395)
....+.+++. +||+||.|..+. -+..+.+. -.+|.++++....
T Consensus 41 ~~a~~~l~~~-~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~~~ 90 (130)
T 3eod_A 41 VDALELLGGF-TPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATEN 90 (130)
T ss_dssp HHHHHHHTTC-CCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEECCCC
T ss_pred HHHHHHHhcC-CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCC
Confidence 3445556666 899999998655 33344433 2588888876543
No 94
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=40.56 E-value=66 Score=29.90 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=26.2
Q ss_pred CeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcC
Q 048238 193 SVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRK 230 (395)
Q Consensus 193 ~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~ 230 (395)
.+++++.||.+- -.-+..++.+|.+.|+.+.+.++.
T Consensus 2 rIli~~~gt~Gh--v~p~~~La~~L~~~Gh~V~v~~~~ 37 (404)
T 3h4t_A 2 GVLITGCGSRGD--TEPLVALAARLRELGADARMCLPP 37 (404)
T ss_dssp CEEEEEESSHHH--HHHHHHHHHHHHHTTCCEEEEECG
T ss_pred eEEEEeCCCCcc--HHHHHHHHHHHHHCCCeEEEEeCH
Confidence 366777887642 234566889999999999888765
No 95
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=39.60 E-value=49 Score=23.82 Aligned_cols=41 Identities=10% Similarity=-0.025 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCccEEEECCchh--hHHHHHHHc-----CCCcEEEecc
Q 048238 16 PHFERALESLPHVSFMVSDGFLW--WTLDSANKF-----GFPRFVFYGM 57 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~ 57 (395)
....+.+++. +||+||.|..++ -+..+.+.+ .+|.++++..
T Consensus 35 ~~a~~~~~~~-~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 35 EEALKKFFSG-NYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp HHHHHHHHHS-CCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHHhcC-CCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECC
Confidence 3344555666 899999998665 344444332 5787777654
No 96
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=39.42 E-value=24 Score=34.09 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=28.4
Q ss_pred HHHHHHhcCCCccEEEECCchhhHHHHHHHcCCCcEEE
Q 048238 17 HFERALESLPHVSFMVSDGFLWWTLDSANKFGFPRFVF 54 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~~~~~~A~~lgIP~i~~ 54 (395)
.+++++++. +||++|.... ...+|+++|||++.+
T Consensus 366 ~le~~i~~~-~pDllig~~~---~~~~a~k~gip~~~~ 399 (458)
T 3pdi_B 366 DLEHAARAG-QAQLVIGNSH---ALASARRLGVPLLRA 399 (458)
T ss_dssp HHHHHHHHH-TCSEEEECTT---HHHHHHHTTCCEEEC
T ss_pred HHHHHHHhc-CCCEEEEChh---HHHHHHHcCCCEEEe
Confidence 577888888 9999998864 567999999998854
No 97
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=39.01 E-value=37 Score=24.75 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=27.1
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHHc-----CCCcEEEecchH
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANKF-----GFPRFVFYGMNN 59 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~~~ 59 (395)
...+.+++. +||+||.|..++ -+..+++.+ ++|.++++....
T Consensus 38 ~a~~~~~~~-~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 86 (120)
T 1tmy_A 38 EAVEKYKEL-KPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQ 86 (120)
T ss_dssp HHHHHHHHH-CCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTTC
T ss_pred HHHHHHHhc-CCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCCC
Confidence 344455555 899999998765 344455433 588887766543
No 98
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=39.00 E-value=43 Score=30.21 Aligned_cols=32 Identities=16% Similarity=0.097 Sum_probs=24.3
Q ss_pred HhcccCccceeecCCchhHHHHHhc----CCcEEeccC
Q 048238 259 ILWHESVQGFLSHCGWNSALESICA----GVPILAWPI 292 (395)
Q Consensus 259 ll~~~~~~~~IthgG~~s~~Ea~~~----GvP~i~~P~ 292 (395)
....+++ +|+-||=||+.+++.. ++|++.++.
T Consensus 72 ~~~~~d~--vi~~GGDGT~l~a~~~~~~~~~pvlgi~~ 107 (307)
T 1u0t_A 72 AADGCEL--VLVLGGDGTFLRAAELARNASIPVLGVNL 107 (307)
T ss_dssp ----CCC--EEEEECHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred cccCCCE--EEEEeCCHHHHHHHHHhccCCCCEEEEeC
Confidence 3445677 9999999999999754 899999974
No 99
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=38.78 E-value=46 Score=24.72 Aligned_cols=41 Identities=10% Similarity=-0.077 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCccEEEECCchh--hHHHHHH---H----cCCCcEEEecc
Q 048238 16 PHFERALESLPHVSFMVSDGFLW--WTLDSAN---K----FGFPRFVFYGM 57 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~---~----lgIP~i~~~~~ 57 (395)
....+.+++. +||+||.|..+. -+..+.+ . -++|.++++..
T Consensus 37 ~~a~~~l~~~-~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 37 ASGLQQALAH-PPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp HHHHHHHHHS-CCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESC
T ss_pred HHHHHHHhcC-CCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCC
Confidence 3444556666 899999998654 3444432 2 26787777653
No 100
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=38.65 E-value=41 Score=25.43 Aligned_cols=41 Identities=10% Similarity=-0.014 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCccEEEECCchh--hHHHHHHHc-----CCCcEEEecch
Q 048238 16 PHFERALESLPHVSFMVSDGFLW--WTLDSANKF-----GFPRFVFYGMN 58 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~~ 58 (395)
....+.+++. +||+||.|. .. .+..+.+.+ ++|+++++...
T Consensus 38 ~~a~~~l~~~-~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~ 85 (142)
T 2qxy_A 38 QEAFTFLRRE-KIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYV 85 (142)
T ss_dssp HHHHHHHTTS-CCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESCC
T ss_pred HHHHHHHhcc-CCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECCC
Confidence 4455566666 899999998 55 334444332 58888876653
No 101
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=37.91 E-value=40 Score=26.06 Aligned_cols=43 Identities=19% Similarity=0.096 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCccEEEECCchh--hHHHHHHHc-----CCCcEEEecchH
Q 048238 16 PHFERALESLPHVSFMVSDGFLW--WTLDSANKF-----GFPRFVFYGMNN 59 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~~~ 59 (395)
....+.+++. +||+||.|..+. -+..+++.+ .+|+++++....
T Consensus 41 ~~a~~~l~~~-~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 90 (154)
T 2rjn_A 41 LDALEALKGT-SVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYAD 90 (154)
T ss_dssp HHHHHHHTTS-CCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGGG
T ss_pred HHHHHHHhcC-CCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 4455566666 899999998655 344444332 688888876554
No 102
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=37.83 E-value=40 Score=25.41 Aligned_cols=42 Identities=10% Similarity=-0.143 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCccEEEECCchh--hHHHHHHH-------cCCCcEEEecch
Q 048238 16 PHFERALESLPHVSFMVSDGFLW--WTLDSANK-------FGFPRFVFYGMN 58 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~-------lgIP~i~~~~~~ 58 (395)
....+.+++. +||+||.|..+. -+..+.+. -.+|.++++...
T Consensus 40 ~~a~~~l~~~-~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 90 (140)
T 3grc_A 40 AQALEQVARR-PYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANA 90 (140)
T ss_dssp HHHHHHHHHS-CCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTH
T ss_pred HHHHHHHHhC-CCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCC
Confidence 3445556666 899999998665 34444432 257877776543
No 103
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=37.71 E-value=39 Score=24.72 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCccEEEECCchh--hHHHHHHHc----CCCcEEEecch
Q 048238 16 PHFERALESLPHVSFMVSDGFLW--WTLDSANKF----GFPRFVFYGMN 58 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l----gIP~i~~~~~~ 58 (395)
....+.++.. +||+||.|..++ -+..+++.+ .+|.++++...
T Consensus 36 ~~~~~~~~~~-~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 83 (122)
T 1zgz_A 36 AGLREIMQNQ-SVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRS 83 (122)
T ss_dssp HHHHHHHHHS-CCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSC
T ss_pred HHHHHHHhcC-CCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCC
Confidence 3445566666 899999998665 345555443 57777776544
No 104
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=37.59 E-value=30 Score=31.84 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=21.6
Q ss_pred ccCccceeec-CCchhHHHHHhcCCcEEeccC
Q 048238 262 HESVQGFLSH-CGWNSALESICAGVPILAWPI 292 (395)
Q Consensus 262 ~~~~~~~Ith-gG~~s~~Ea~~~GvP~i~~P~ 292 (395)
.+|+ +|++ .+.....-+-..|+|.+.+-.
T Consensus 114 ~PD~--Vv~~~~~~~~~~aa~~~giP~v~~~~ 143 (391)
T 3tsa_A 114 RPSV--LLVDVCALIGRVLGGLLDLPVVLHRW 143 (391)
T ss_dssp CCSE--EEEETTCHHHHHHHHHTTCCEEEECC
T ss_pred CCCE--EEeCcchhHHHHHHHHhCCCEEEEec
Confidence 5787 7776 556666777789999988744
No 105
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=37.59 E-value=41 Score=25.46 Aligned_cols=42 Identities=12% Similarity=-0.039 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCccEEEECCchh--hHHHHHHHc----CCCcEEEecch
Q 048238 16 PHFERALESLPHVSFMVSDGFLW--WTLDSANKF----GFPRFVFYGMN 58 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l----gIP~i~~~~~~ 58 (395)
....+.+++. +||+||.|..++ -+..+++.+ .+|.++++...
T Consensus 38 ~~al~~~~~~-~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~~~ 85 (136)
T 2qzj_A 38 EEAIGKIFSN-KYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTYIN 85 (136)
T ss_dssp HHHHHHHHHC-CCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCC
T ss_pred HHHHHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEcCC
Confidence 3344556666 899999998765 455555443 68888776554
No 106
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=36.94 E-value=33 Score=25.77 Aligned_cols=42 Identities=7% Similarity=0.048 Sum_probs=27.1
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHHc-----CCCcEEEecchH
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANKF-----GFPRFVFYGMNN 59 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~~~ 59 (395)
...+.+++. +||+||.|..++ -+..+++.+ .+|.++++....
T Consensus 40 ~al~~~~~~-~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 88 (133)
T 3b2n_A 40 DAMKLIEEY-NPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKR 88 (133)
T ss_dssp HHHHHHHHH-CCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCC
T ss_pred HHHHHHhhc-CCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEecCCC
Confidence 344555565 899999998765 345554433 578887766543
No 107
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=36.71 E-value=43 Score=25.77 Aligned_cols=43 Identities=14% Similarity=-0.015 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCccEEEECCchh--hHHHHHHH-----cCCCcEEEecchH
Q 048238 16 PHFERALESLPHVSFMVSDGFLW--WTLDSANK-----FGFPRFVFYGMNN 59 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~-----lgIP~i~~~~~~~ 59 (395)
....+.+++. +||+||.|..+. -+..+++. -++|+++++....
T Consensus 56 ~~al~~l~~~-~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 105 (150)
T 4e7p_A 56 QEAIQLLEKE-SVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKR 105 (150)
T ss_dssp HHHHHHHTTS-CCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCC
T ss_pred HHHHHHhhcc-CCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 4455566666 899999998654 44444443 2578887766543
No 108
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=36.41 E-value=32 Score=27.86 Aligned_cols=42 Identities=12% Similarity=-0.013 Sum_probs=27.7
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHH-----cCCCcEEEecchH
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANK-----FGFPRFVFYGMNN 59 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~-----lgIP~i~~~~~~~ 59 (395)
...+.+++. +||+||.|..++ -+..+++. -.+|.++++....
T Consensus 42 ~al~~~~~~-~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~~~~ 90 (184)
T 3rqi_A 42 EALKLAGAE-KFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLTGYAS 90 (184)
T ss_dssp HHHHHHTTS-CCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred HHHHHHhhC-CCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 344556666 899999998766 34444433 2588887766543
No 109
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=35.94 E-value=46 Score=30.56 Aligned_cols=102 Identities=15% Similarity=0.147 Sum_probs=66.4
Q ss_pred CCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCHHHHhcccCccceeec
Q 048238 192 SSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQKEILWHESVQGFLSH 271 (395)
Q Consensus 192 ~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~Ith 271 (395)
+.+-.|.+|.++ +++++.+...|.+++.. +.. ......+ .++ .++...++|+.+|+ ++.|
T Consensus 142 ~tvGIiG~G~IG-------~~va~~~~~fg~~v~~~-d~~---~~~~~~~----~~~---~~~~l~ell~~sDi--vslh 201 (334)
T 3kb6_A 142 LTLGVIGTGRIG-------SRVAMYGLAFGMKVLCY-DVV---KREDLKE----KGC---VYTSLDELLKESDV--ISLH 201 (334)
T ss_dssp SEEEEECCSHHH-------HHHHHHHHHTTCEEEEE-CSS---CCHHHHH----TTC---EECCHHHHHHHCSE--EEEC
T ss_pred cEEEEECcchHH-------HHHHHhhcccCceeeec-CCc---cchhhhh----cCc---eecCHHHHHhhCCE--EEEc
Confidence 567788899887 45566666678887543 321 1111111 232 34667899999999 8888
Q ss_pred CCchhHHHHHhcCCcEEeccCCC--chhHHHHHHhhhhce-EEEeeccCCCCcCccCHHHHHHHHHH
Q 048238 272 CGWNSALESICAGVPILAWPIMA--DQPLNARMVTEEIKV-ALRVETCDGSVRGFVKWQGLEKTVRE 335 (395)
Q Consensus 272 gG~~s~~Ea~~~GvP~i~~P~~~--DQ~~na~~v~~~lg~-g~~~~~~~~~~~~~~~~~~l~~~i~~ 335 (395)
+ |+.. .+..|+..+... +- ++.+.. +|.+-++.+.|.+++++
T Consensus 202 ~------------------Plt~~T~~li~~~~l~~m-k~~a~lIN~---aRG~iVde~aL~~aL~~ 246 (334)
T 3kb6_A 202 V------------------PYTKETHHMINEERISLM-KDGVYLINT---ARGKVVDTDALYRAYQR 246 (334)
T ss_dssp C------------------CCCTTTTTCBCHHHHHHS-CTTEEEEEC---SCGGGBCHHHHHHHHHT
T ss_pred C------------------CCChhhccCcCHHHHhhc-CCCeEEEec---CccccccHHHHHHHHHh
Confidence 7 7653 356678777444 53 345555 56678899999998874
No 110
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=35.80 E-value=60 Score=24.55 Aligned_cols=42 Identities=7% Similarity=-0.056 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCccEEEECCchh--hHHHHHHH-------cCCCcEEEecch
Q 048238 16 PHFERALESLPHVSFMVSDGFLW--WTLDSANK-------FGFPRFVFYGMN 58 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~-------lgIP~i~~~~~~ 58 (395)
....+.+++. +||+||.|..+. -+..+.+. -++|.++++...
T Consensus 41 ~~a~~~l~~~-~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (144)
T 3kht_A 41 AKALYQVQQA-KYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNV 91 (144)
T ss_dssp HHHHHHHTTC-CCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTC
T ss_pred HHHHHHhhcC-CCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCC
Confidence 3445566666 899999998665 34444432 357888776643
No 111
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=35.67 E-value=1.9e+02 Score=23.91 Aligned_cols=144 Identities=12% Similarity=0.189 Sum_probs=77.6
Q ss_pred CCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHH---hcCCCeEEecCCCHHHHhcccCccce
Q 048238 192 SSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEER---VKGRGLVVRDWVNQKEILWHESVQGF 268 (395)
Q Consensus 192 ~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~pq~~ll~~~~~~~~ 268 (395)
.+.|-|-+||.. +....++....|+..|..+-..+-+. ...|+.+.+. ....+ ++.|
T Consensus 21 ~~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~Sa-HR~p~~l~~~~~~a~~~g-----------------~~Vi 80 (182)
T 1u11_A 21 APVVGIIMGSQS--DWETMRHADALLTELEIPHETLIVSA-HRTPDRLADYARTAAERG-----------------LNVI 80 (182)
T ss_dssp CCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCT-TTCHHHHHHHHHHTTTTT-----------------CCEE
T ss_pred CCEEEEEECcHH--HHHHHHHHHHHHHHcCCCeEEEEEcc-cCCHHHHHHHHHHHHhCC-----------------CcEE
Confidence 456777788876 55677788888888887765444332 2344433221 11111 2237
Q ss_pred eecCCch----hHHHHHhcCCcEEeccCCCc--hhHHHH-HHhh--hhceEEEeeccCCCCcCccCHHHHHHHHHHHhCC
Q 048238 269 LSHCGWN----SALESICAGVPILAWPIMAD--QPLNAR-MVTE--EIKVALRVETCDGSVRGFVKWQGLEKTVRELMGG 339 (395)
Q Consensus 269 IthgG~~----s~~Ea~~~GvP~i~~P~~~D--Q~~na~-~v~~--~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~ 339 (395)
|.-.|.. ++.-+ ..-.|+|.+|.... .-..+. -+.+ . |+.+..-.. ++.+..+...++..|. -+.|
T Consensus 81 Ia~AG~aa~LpgvvA~-~t~~PVIgVP~~~~~l~G~dsLlSivqmP~-GvpVatV~I--~~a~~~nAallAaqIl-a~~d 155 (182)
T 1u11_A 81 IAGAGGAAHLPGMCAA-WTRLPVLGVPVESRALKGMDSLLSIVQMPG-GVPVGTLAI--GASGAKNAALLAASIL-ALYN 155 (182)
T ss_dssp EEEEESSCCHHHHHHH-HCSSCEEEEEECCTTTTTHHHHHHHHCCCT-TSCCEECCS--SHHHHHHHHHHHHHHH-GGGC
T ss_pred EEecCchhhhHHHHHh-ccCCCEEEeeCCCCCCCcHHHHHHHhcCCC-CCceEEEec--CCccchHHHHHHHHHH-ccCC
Confidence 7766653 33333 35789999998432 222322 2334 4 665332210 0002245555555443 2356
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhC
Q 048238 340 EKGEKARTKVKELSEIARKAMEEE 363 (395)
Q Consensus 340 ~~~~~~~~~a~~l~~~~~~~~~~~ 363 (395)
+ .++++.+..++...+.+.+.
T Consensus 156 ~---~l~~kL~~~r~~~~~~v~~~ 176 (182)
T 1u11_A 156 P---ALAARLETWRALQTASVPNS 176 (182)
T ss_dssp H---HHHHHHHHHHHHHHHHSCSS
T ss_pred H---HHHHHHHHHHHHHHHHHHHh
Confidence 6 78888888888777654444
No 112
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=35.58 E-value=28 Score=30.91 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=37.4
Q ss_pred ccCccceeecCCchhHHHHHhc------CCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHH
Q 048238 262 HESVQGFLSHCGWNSALESICA------GVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRE 335 (395)
Q Consensus 262 ~~~~~~~IthgG~~s~~Ea~~~------GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~ 335 (395)
.+++ +|+-||=||+.+++.. ++|++.+|.. . .|. + ..+.++++.++++.
T Consensus 35 ~~D~--vv~lGGDGT~l~aa~~~~~~~~~~PilGIn~G-----------~---lgf-l--------~~~~~~~~~~~l~~ 89 (272)
T 2i2c_A 35 EPEI--VISIGGDGTFLSAFHQYEERLDEIAFIGIHTG-----------H---LGF-Y--------ADWRPAEADKLVKL 89 (272)
T ss_dssp SCSE--EEEEESHHHHHHHHHHTGGGTTTCEEEEEESS-----------S---CCS-S--------CCBCGGGHHHHHHH
T ss_pred CCCE--EEEEcCcHHHHHHHHHHhhcCCCCCEEEEeCC-----------C---CCc-C--------CcCCHHHHHHHHHH
Confidence 3456 9999999999998764 8999999752 1 111 1 23456677777777
Q ss_pred HhCCC
Q 048238 336 LMGGE 340 (395)
Q Consensus 336 ~l~~~ 340 (395)
++++.
T Consensus 90 l~~g~ 94 (272)
T 2i2c_A 90 LAKGE 94 (272)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 77653
No 113
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=35.18 E-value=49 Score=28.54 Aligned_cols=42 Identities=21% Similarity=0.141 Sum_probs=28.6
Q ss_pred HHHHHHHHhcC-CCccEEEECCchhh-------HHHHHHHcCCCcEEEec
Q 048238 15 QPHFERALESL-PHVSFMVSDGFLWW-------TLDSANKFGFPRFVFYG 56 (395)
Q Consensus 15 ~~~l~~~l~~~-~kpD~vI~D~~~~~-------~~~~A~~lgIP~i~~~~ 56 (395)
.|.+.+++++. .+||+|++|..-.. +..+.-.+++|+|.+.=
T Consensus 90 ~P~~l~al~~L~~~PdlllvDG~Gi~HpR~~GlA~HlGv~l~~PtIGVAK 139 (225)
T 2w36_A 90 GPLFLKAWEKLRTKPDVVVFDGQGLAHPRKLGIASHMGLFIEIPTIGVAK 139 (225)
T ss_dssp HHHHHHHHTTCCSCCSEEEEESCSSSSTTSCCHHHHHHHHHTSCEEEEES
T ss_pred hHHHHHHHHhcCCCCCEEEEeCeEEEcCCCCCchhhhhhhhCCCEEEEEe
Confidence 35666777765 47999999974442 33355667899997743
No 114
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=34.94 E-value=51 Score=24.72 Aligned_cols=43 Identities=12% Similarity=0.043 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCccEEEECCchh-------hHHHHHHH-----cCCCcEEEecchH
Q 048238 16 PHFERALESLPHVSFMVSDGFLW-------WTLDSANK-----FGFPRFVFYGMNN 59 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~-------~~~~~A~~-----lgIP~i~~~~~~~ 59 (395)
....+.+++. +||+||.|..+. -+..+.+. -.+|+++++....
T Consensus 37 ~~a~~~l~~~-~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 91 (140)
T 2qr3_A 37 VSLSTVLREE-NPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYAD 91 (140)
T ss_dssp HHHHHHHHHS-CEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGGG
T ss_pred HHHHHHHHcC-CCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCCC
Confidence 4455566666 899999998653 34444433 2688888876544
No 115
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=34.93 E-value=46 Score=24.09 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=26.6
Q ss_pred HHHHHhcCCCccEEEECCchh--hHHHHHHH----cCCCcEEEecchH
Q 048238 18 FERALESLPHVSFMVSDGFLW--WTLDSANK----FGFPRFVFYGMNN 59 (395)
Q Consensus 18 l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~----lgIP~i~~~~~~~ 59 (395)
..+.+++. +||+||.|..++ .+..+++. -.+|.++++....
T Consensus 37 a~~~~~~~-~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~ 83 (120)
T 2a9o_A 37 ALEQFEAE-QPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKDS 83 (120)
T ss_dssp HHHHHHHH-CCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCCS
T ss_pred HHHHHHhC-CCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCCc
Confidence 34445555 899999998665 34444433 4688888866543
No 116
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=34.90 E-value=1.8e+02 Score=23.47 Aligned_cols=138 Identities=13% Similarity=0.108 Sum_probs=70.2
Q ss_pred CeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCHHHHhcccCccceeecC
Q 048238 193 SVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQKEILWHESVQGFLSHC 272 (395)
Q Consensus 193 ~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~Ithg 272 (395)
+.|-|-+||.+ +....++....|+..+..+-..+-+. ...|+.+.+..+ .. -..-..+.+|.-.
T Consensus 3 ~~V~Iimgs~S--D~~v~~~a~~~l~~~gi~~ev~V~sa-HR~p~~~~~~~~-----------~a--~~~~~~~ViIa~A 66 (159)
T 3rg8_A 3 PLVIILMGSSS--DMGHAEKIASELKTFGIEYAIRIGSA-HKTAEHVVSMLK-----------EY--EALDRPKLYITIA 66 (159)
T ss_dssp CEEEEEESSGG--GHHHHHHHHHHHHHTTCEEEEEECCT-TTCHHHHHHHHH-----------HH--HTSCSCEEEEEEC
T ss_pred CeEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEcc-cCCHHHHHHHHH-----------Hh--hhcCCCcEEEEEC
Confidence 45677778876 45677788888888887765444332 234443322110 00 0000123378777
Q ss_pred CchhHHHHH---hcCCcEEeccCCCc---hhHHHHHHhh--hhceEEEeeccCCCCcCccCHHHHHHHHHHHhCCChhHH
Q 048238 273 GWNSALESI---CAGVPILAWPIMAD---QPLNARMVTE--EIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGEKGEK 344 (395)
Q Consensus 273 G~~s~~Ea~---~~GvP~i~~P~~~D---Q~~na~~v~~--~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 344 (395)
|...-+-++ ..-.|+|.+|...- -.. -.-+.+ . |+.+.--. +..++..++..|-. +.|+ .
T Consensus 67 G~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~d-LlS~vqmp~-GvpVatv~------~~~nAa~lA~~Il~-~~d~---~ 134 (159)
T 3rg8_A 67 GRSNALSGFVDGFVKGATIACPPPSDSFAGAD-IYSSLRMPS-GISPALVL------EPKNAALLAARIFS-LYDK---E 134 (159)
T ss_dssp CSSCCHHHHHHHHSSSCEEECCCCCCGGGGTH-HHHHHCCCT-TCCCEECC------SHHHHHHHHHHHHT-TTCH---H
T ss_pred CchhhhHHHHHhccCCCEEEeeCCCCCCCCcc-HHHHHhCCC-CCceEEec------CchHHHHHHHHHHh-CCCH---H
Confidence 754333332 35689999996421 111 111222 2 44433221 34555555554432 2455 5
Q ss_pred HHHHHHHHHHHHHH
Q 048238 345 ARTKVKELSEIARK 358 (395)
Q Consensus 345 ~~~~a~~l~~~~~~ 358 (395)
++++.+..++...+
T Consensus 135 l~~kl~~~r~~~~~ 148 (159)
T 3rg8_A 135 IADSVKSYMESNAQ 148 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665553
No 117
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=34.75 E-value=39 Score=26.09 Aligned_cols=42 Identities=17% Similarity=0.067 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCccEEEECCchh--hHHHHHHH-----cCCCcEEEecch
Q 048238 16 PHFERALESLPHVSFMVSDGFLW--WTLDSANK-----FGFPRFVFYGMN 58 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~-----lgIP~i~~~~~~ 58 (395)
....+.+++. +||+||.|..+. -+..+.+. -.+|+|+++...
T Consensus 48 ~~a~~~l~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 96 (153)
T 3hv2_A 48 TQALQLLASR-EVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDP 96 (153)
T ss_dssp HHHHHHHHHS-CCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCC
T ss_pred HHHHHHHHcC-CCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECCC
Confidence 3445566666 899999998665 34444433 257887776544
No 118
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=34.70 E-value=37 Score=34.75 Aligned_cols=114 Identities=10% Similarity=0.095 Sum_probs=69.7
Q ss_pred EecCCCHHHHhcccCccceeecCCchhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCC-CcCccCHHH
Q 048238 250 VRDWVNQKEILWHESVQGFLSHCGWNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGS-VRGFVKWQG 328 (395)
Q Consensus 250 ~~~~~pq~~ll~~~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~-~~~~~~~~~ 328 (395)
+.++.+-.++|..+|+ .||=- .+.+.|.+..++|+|....-.|++.+- .+ | +..+..+.. ..-.-+.++
T Consensus 603 ~~~~~di~~ll~~aD~--lITDy-SSv~fD~~~l~kPiif~~~D~~~Y~~~----~r-g--~y~d~~~~~pg~~~~~~~e 672 (729)
T 3l7i_A 603 VSNYNDVSELFLISDC--LITDY-SSVMFDYGILKRPQFFFAYDIDKYDKG----LR-G--FYMNYMEDLPGPIYTEPYG 672 (729)
T ss_dssp CTTCSCHHHHHHTCSE--EEESS-CTHHHHHGGGCCCEEEECTTTTTTTSS----CC-S--BSSCTTSSSSSCEESSHHH
T ss_pred CCCCcCHHHHHHHhCE--EEeec-hHHHHhHHhhCCCEEEecCCHHHHhhc----cC-C--cccChhHhCCCCeECCHHH
Confidence 3455677889999999 99974 357789999999999887766654331 11 2 222221000 001247788
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhCCCchHHHHHHHHHH
Q 048238 329 LEKTVRELMGGEKGEKARTKVKELSEIARKAMEEEKGSSWRCLDMLLDE 377 (395)
Q Consensus 329 l~~~i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~~~~~~l~~~ 377 (395)
|.++|.....+. ..++++.+++.+.+-.. .+| .++.+-++.+++.
T Consensus 673 L~~~i~~~~~~~--~~~~~~~~~~~~~~~~~-~dg-~as~ri~~~i~~~ 717 (729)
T 3l7i_A 673 LAKELKNLDKVQ--QQYQEKIDAFYDRFCSV-DNG-KASQYIGDLIHKD 717 (729)
T ss_dssp HHHHHTTHHHHH--HHTHHHHHHHHHHHSTT-CCS-CHHHHHHHHHHHH
T ss_pred HHHHHhhhhccc--hhHHHHHHHHHHHhCCc-cCC-hHHHHHHHHHHhc
Confidence 888887766432 26788888887777543 444 4444444444443
No 119
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=34.66 E-value=52 Score=24.00 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=27.0
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHH----cCCCcEEEecchH
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANK----FGFPRFVFYGMNN 59 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~----lgIP~i~~~~~~~ 59 (395)
...+.+++. +||+||.|..++ -+..+++. -.+|.++++....
T Consensus 38 ~a~~~~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~ 85 (123)
T 1xhf_A 38 EMHQILSEY-DINLVIMDINLPGKNGLLLARELREQANVALMFLTGRDN 85 (123)
T ss_dssp HHHHHHHHS-CCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESCCS
T ss_pred HHHHHHhcC-CCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECCCC
Confidence 344555666 899999998665 34444433 3678777765543
No 120
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=34.53 E-value=50 Score=24.64 Aligned_cols=41 Identities=12% Similarity=-0.006 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHH-----cCCCcEEEecch
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANK-----FGFPRFVFYGMN 58 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~-----lgIP~i~~~~~~ 58 (395)
...+.+++. +||+||.|..++ -+..+.+. -++|.++++...
T Consensus 38 ~al~~~~~~-~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (132)
T 3crn_A 38 EGLAKIENE-FFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTGYA 85 (132)
T ss_dssp HHHHHHHHS-CCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEESCC
T ss_pred HHHHHHhcC-CCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEeccc
Confidence 344555666 899999998665 34444433 257888776654
No 121
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=34.37 E-value=60 Score=23.49 Aligned_cols=42 Identities=14% Similarity=0.043 Sum_probs=27.0
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHH-----cCCCcEEEecchH
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANK-----FGFPRFVFYGMNN 59 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~-----lgIP~i~~~~~~~ 59 (395)
...+.+++. +||++|.|..++ -+..+.+. -.+|.++++....
T Consensus 35 ~a~~~~~~~-~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 83 (121)
T 2pl1_A 35 EADYYLNEH-IPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARES 83 (121)
T ss_dssp HHHHHHHHS-CCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCCC
T ss_pred HHHHHHhcc-CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 344556666 899999998665 34444433 2588888766543
No 122
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=34.18 E-value=45 Score=25.39 Aligned_cols=39 Identities=5% Similarity=-0.018 Sum_probs=24.5
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHHc-----CCCcEEEec
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANKF-----GFPRFVFYG 56 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~ 56 (395)
...+.+++. +||+||.|..++ -+..+++.+ .+|.++++.
T Consensus 40 ~al~~~~~~-~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~ 85 (141)
T 3cu5_A 40 NAIQIALKH-PPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSG 85 (141)
T ss_dssp HHHHHHTTS-CCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECC
T ss_pred HHHHHHhcC-CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeC
Confidence 334455565 899999998665 455555433 467666644
No 123
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=33.74 E-value=44 Score=30.33 Aligned_cols=38 Identities=16% Similarity=0.032 Sum_probs=24.6
Q ss_pred HHHhcCCCccEEEECCchhhHHHHHHHcCCCcEEEecch
Q 048238 20 RALESLPHVSFMVSDGFLWWTLDSANKFGFPRFVFYGMN 58 (395)
Q Consensus 20 ~~l~~~~kpD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~ 58 (395)
|.|... +||+||......-...--++.|||++.+.+.+
T Consensus 110 E~i~al-~PDLIi~~~~~~~~~~~L~~~gipvv~~~~~~ 147 (335)
T 4hn9_A 110 EACVAA-TPDVVFLPMKLKKTADTLESLGIKAVVVNPED 147 (335)
T ss_dssp HHHHHT-CCSEEEEEGGGHHHHHHHHHTTCCEEEECCCS
T ss_pred HHHHhc-CCCEEEEeCcchhHHHHHHHcCCCEEEEcCCC
Confidence 334445 89999987643323333467899999886543
No 124
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=33.62 E-value=39 Score=24.86 Aligned_cols=41 Identities=2% Similarity=-0.025 Sum_probs=26.3
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHHc-----CCCcEEEecch
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANKF-----GFPRFVFYGMN 58 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~~ 58 (395)
...+.+++. +||+||.|..++ -+..+++.+ .+|.++++...
T Consensus 38 ~a~~~~~~~-~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (124)
T 1srr_A 38 QALDIVTKE-RPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYG 85 (124)
T ss_dssp HHHHHHHHH-CCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred HHHHHHhcc-CCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEccC
Confidence 344455555 899999998665 344444432 57888776654
No 125
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=33.44 E-value=42 Score=25.18 Aligned_cols=43 Identities=14% Similarity=0.175 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCccEEEECCchh---hHHHHHHH----cCCCcEEEecchH
Q 048238 16 PHFERALESLPHVSFMVSDGFLW---WTLDSANK----FGFPRFVFYGMNN 59 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~---~~~~~A~~----lgIP~i~~~~~~~ 59 (395)
....+.+++. +||+||.|.... -+..+++. ..+|+++++....
T Consensus 44 ~~a~~~~~~~-~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~ 93 (140)
T 3cg0_A 44 EEAVRCAPDL-RPDIALVDIMLCGALDGVETAARLAAGCNLPIIFITSSQD 93 (140)
T ss_dssp HHHHHHHHHH-CCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEEECCCC
T ss_pred HHHHHHHHhC-CCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEEecCCC
Confidence 3444555665 899999997553 34444433 4789888876543
No 126
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=33.36 E-value=43 Score=30.92 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=24.6
Q ss_pred CeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcC
Q 048238 193 SVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRK 230 (395)
Q Consensus 193 ~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~ 230 (395)
++++++.|+.+- ...+..++++|.+.|+.+.+.+..
T Consensus 17 rIl~~~~~~~gh--~~~~~~La~~L~~~GheV~v~~~~ 52 (398)
T 4fzr_A 17 RILVIAGCSEGF--VMPLVPLSWALRAAGHEVLVAASE 52 (398)
T ss_dssp EEEEECCSSHHH--HGGGHHHHHHHHHTTCEEEEEEEG
T ss_pred EEEEEcCCCcch--HHHHHHHHHHHHHCCCEEEEEcCH
Confidence 567777664432 122457889999999999888764
No 127
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=33.23 E-value=41 Score=24.58 Aligned_cols=39 Identities=10% Similarity=-0.014 Sum_probs=23.7
Q ss_pred HHHHHhcCCCccEEEECCchh--hHHHHHHHc-------CCCcEEEecc
Q 048238 18 FERALESLPHVSFMVSDGFLW--WTLDSANKF-------GFPRFVFYGM 57 (395)
Q Consensus 18 l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-------gIP~i~~~~~ 57 (395)
..+.+++. +||+||.|..++ -+..+++.+ .+|.++++..
T Consensus 37 a~~~~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 84 (124)
T 1mb3_A 37 ALSIAREN-KPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAF 84 (124)
T ss_dssp HHHHHHHH-CCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC--
T ss_pred HHHHHhcC-CCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEECC
Confidence 34455555 899999998765 344444332 5777776554
No 128
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} SCOP: c.92.1.3
Probab=33.07 E-value=1.8e+02 Score=22.99 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=24.9
Q ss_pred CCeeEEEecccccCCHHHHHHHHHHHHh-CC-CcEEEE
Q 048238 192 SSVMYVAFGSQAEISAQQLKEIATGLEQ-SK-VNFLWV 227 (395)
Q Consensus 192 ~~vv~vs~Gs~~~~~~~~~~~l~~~l~~-~~-~~~i~~ 227 (395)
..+|+|+.||........+..++..+++ .+ ..|.+.
T Consensus 25 ~avlLv~HGS~~p~~~~~~~~la~~l~~~~~~~~V~~a 62 (156)
T 1tjn_A 25 RGLVIVGHGSQLNHYREVMELHRKRIEESGAFDEVKIA 62 (156)
T ss_dssp EEEEEEECCTTSTTHHHHHHHHHHHHHHHTSSSEEEEE
T ss_pred cCEEEEECCCCCHHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 4799999999864445678888888865 33 344444
No 129
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=32.98 E-value=79 Score=26.61 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=27.0
Q ss_pred eEEecCCC-HHHHh-cccCccceeecCCchhHHHHHh---------cCCcEEecc
Q 048238 248 LVVRDWVN-QKEIL-WHESVQGFLSHCGWNSALESIC---------AGVPILAWP 291 (395)
Q Consensus 248 ~~~~~~~p-q~~ll-~~~~~~~~IthgG~~s~~Ea~~---------~GvP~i~~P 291 (395)
.++++... ...++ ..++. .++--||.||+-|... +++|++.+-
T Consensus 101 ~i~~~~~~~Rk~~m~~~sda-~IalPGG~GTldEl~e~lt~~qlg~~~kPvvlln 154 (199)
T 3qua_A 101 LIVTDTMRERKREMEHRSDA-FIALPGGIGTLEEFFEAWTAGYLGMHDKPLILLD 154 (199)
T ss_dssp EEEESSHHHHHHHHHHHCSE-EEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEEC
T ss_pred eEEcCCHHHHHHHHHHhcCc-cEEeCCCccHHHHHHHHHHHHHhccCCCCEEEEc
Confidence 34445544 33343 44544 5667788899888753 589999874
No 130
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=32.61 E-value=47 Score=24.48 Aligned_cols=41 Identities=12% Similarity=-0.097 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCccEEEECCchh--hHHHHHHH-------cCCCcEEEecc
Q 048238 16 PHFERALESLPHVSFMVSDGFLW--WTLDSANK-------FGFPRFVFYGM 57 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~-------lgIP~i~~~~~ 57 (395)
....+.+++. +||+||.|..+. -+..+++. ..+|.++++..
T Consensus 37 ~~a~~~l~~~-~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 86 (127)
T 3i42_A 37 TDALHAMSTR-GYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGF 86 (127)
T ss_dssp HHHHHHHHHS-CCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC
T ss_pred HHHHHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECC
Confidence 4445566666 899999998654 34444432 34677766553
No 131
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=32.54 E-value=47 Score=24.49 Aligned_cols=41 Identities=7% Similarity=-0.099 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCCccEEEECCchh--hHHHHHHHc-------CCCcEEEecc
Q 048238 16 PHFERALESLPHVSFMVSDGFLW--WTLDSANKF-------GFPRFVFYGM 57 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-------gIP~i~~~~~ 57 (395)
....+.+++. +||+||.|..++ -+..+++.+ .+|.++++..
T Consensus 41 ~~a~~~~~~~-~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 90 (129)
T 1p6q_A 41 EQGMKIMAQN-PHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQ 90 (129)
T ss_dssp HHHHHHHHTS-CCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEECCSC
T ss_pred HHHHHHHHcC-CCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEEEeCC
Confidence 3344556666 899999998765 455555443 3566665544
No 132
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=32.45 E-value=93 Score=25.90 Aligned_cols=42 Identities=14% Similarity=0.001 Sum_probs=26.5
Q ss_pred EEecCCCH-HH-HhcccCccceeecCCchhHHHHHh---------cCCcEEecc
Q 048238 249 VVRDWVNQ-KE-ILWHESVQGFLSHCGWNSALESIC---------AGVPILAWP 291 (395)
Q Consensus 249 ~~~~~~pq-~~-ll~~~~~~~~IthgG~~s~~Ea~~---------~GvP~i~~P 291 (395)
+++++... .. ++.+++ ..++--||.||+-|... +++|++.+=
T Consensus 93 i~~~~~~~Rk~~m~~~sd-a~IalPGG~GTLdElfe~lt~~qlg~~~kPvvlln 145 (189)
T 3sbx_A 93 VVTETMWERKQVMEDRAN-AFITLPGGVGTLDELLDVWTEGYLGMHDKSIVVLD 145 (189)
T ss_dssp EEESSHHHHHHHHHHHCS-EEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEEC
T ss_pred EEcCCHHHHHHHHHHHCC-EEEEeCCCcchHHHHHHHHHHHHhcccCCCEEEec
Confidence 33444443 33 344555 45667788899888753 589999874
No 133
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=32.15 E-value=49 Score=28.55 Aligned_cols=39 Identities=8% Similarity=0.033 Sum_probs=24.7
Q ss_pred HHHHHHhcCCCccEEEECCchh-hHHHHHHHcCCCcEEEecc
Q 048238 17 HFERALESLPHVSFMVSDGFLW-WTLDSANKFGFPRFVFYGM 57 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~-~~~~~A~~lgIP~i~~~~~ 57 (395)
.++. |... +||+||+..... -....-+++|||++.+...
T Consensus 52 n~E~-i~~l-~PDLIi~~~~~~~~~~~~L~~~gipvv~~~~~ 91 (260)
T 2q8p_A 52 NVEA-VKKL-KPTHVLSVSTIKDEMQPFYKQLNMKGYFYDFD 91 (260)
T ss_dssp CHHH-HHHT-CCSEEEEEGGGHHHHHHHHHHHTSCCEEECCS
T ss_pred CHHH-HHhc-CCCEEEecCccCHHHHHHHHHcCCcEEEecCC
Confidence 3444 4455 899999865332 2233456789999987543
No 134
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=32.02 E-value=3.3e+02 Score=25.73 Aligned_cols=136 Identities=11% Similarity=0.111 Sum_probs=71.2
Q ss_pred CCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHH---HhcCCCeEEecCCCHHHHhcccCccc
Q 048238 191 GSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEE---RVKGRGLVVRDWVNQKEILWHESVQG 267 (395)
Q Consensus 191 ~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~pq~~ll~~~~~~~ 267 (395)
..+.|-|-+||.+ +....++.+..|+..|..+-..+-+. ...|+...+ .....+. .++
T Consensus 264 ~~~~V~Ii~gs~S--D~~~~~~a~~~l~~~gi~~~v~V~sa-HR~p~~~~~~~~~~~~~g~--------------~~v-- 324 (425)
T 2h31_A 264 SQCRVVVLMGSTS--DLGHCEKIKKACGNFGIPCELRVTSA-HKGPDETLRIKAEYEGDGI--------------PTV-- 324 (425)
T ss_dssp CCCEEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECCT-TTCHHHHHHHHHHHHTTCC--------------CEE--
T ss_pred CCCeEEEEecCcc--cHHHHHHHHHHHHHcCCceEEeeeec-cCCHHHHHHHHHHHHHCCC--------------CeE--
Confidence 4467888888876 55677788888888888765444332 224433221 1111111 023
Q ss_pred eeecCCch----hHHHHHhcCCcEEeccCC-CchhHHHH-HHhh--hhceEEEeeccCCCCcCccCHHHHHHHHHHHhCC
Q 048238 268 FLSHCGWN----SALESICAGVPILAWPIM-ADQPLNAR-MVTE--EIKVALRVETCDGSVRGFVKWQGLEKTVRELMGG 339 (395)
Q Consensus 268 ~IthgG~~----s~~Ea~~~GvP~i~~P~~-~DQ~~na~-~v~~--~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~ 339 (395)
+|.-+|.. ++.-++ .-.|+|.+|.. ..+...+. -+.+ . |+.+..-. ...++..++..|. -+.|
T Consensus 325 iIa~AG~~a~Lpgvva~~-t~~PVIgvP~~~~~~G~daLls~vqmp~-g~pvatv~------~~~nAa~~A~~Il-~~~~ 395 (425)
T 2h31_A 325 FVAVAGRSNGLGPVMSGN-TAYPVISCPPLTPDWGVQDVWSSLRLPS-GLGCSTVL------SPEGSAQFAAQIF-GLSN 395 (425)
T ss_dssp EEEECCSSCCHHHHHHHH-CSSCEEECCCCCTTTHHHHGGGTSSCCS-SCCCEECC------CHHHHHHHHHHHH-HTTC
T ss_pred EEEEcCcccchHhHHhcc-CCCCEEEeeCccccccHHHHHHHhcCCC-CCceEEec------CchHHHHHHHHHH-ccCC
Confidence 77766653 333333 47899999984 22222221 1223 3 55543321 2345555555554 2356
Q ss_pred ChhHHHHHHHHHHHHHHH
Q 048238 340 EKGEKARTKVKELSEIAR 357 (395)
Q Consensus 340 ~~~~~~~~~a~~l~~~~~ 357 (395)
+ .++++.+..+....
T Consensus 396 ~---~l~~kl~~~~~~~~ 410 (425)
T 2h31_A 396 H---LVWSKLRASILNTW 410 (425)
T ss_dssp H---HHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHH
Confidence 5 56665555555544
No 135
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=31.46 E-value=70 Score=23.90 Aligned_cols=33 Identities=12% Similarity=0.032 Sum_probs=21.9
Q ss_pred CccEEEECCchh--hHHHHHHHc------CCCcEEEecchH
Q 048238 27 HVSFMVSDGFLW--WTLDSANKF------GFPRFVFYGMNN 59 (395)
Q Consensus 27 kpD~vI~D~~~~--~~~~~A~~l------gIP~i~~~~~~~ 59 (395)
+||+||.|..++ -+..+++.+ .+|.++++....
T Consensus 52 ~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~ 92 (133)
T 2r25_B 52 NYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFAD 92 (133)
T ss_dssp CCSEEEECSCCSSSCHHHHHHHHHHHSCCCSCEEEEESCCS
T ss_pred CCCEEEEeCCCCCCChHHHHHHHHhhcCCCCCEEEEECCCC
Confidence 799999998776 344444322 478777766543
No 136
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=31.17 E-value=69 Score=23.63 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCCccEEEECCchh--hHHHHHHHc------CCCcEEEecc
Q 048238 16 PHFERALESLPHVSFMVSDGFLW--WTLDSANKF------GFPRFVFYGM 57 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l------gIP~i~~~~~ 57 (395)
....+.+++. +||+||.|..+. -+..+++.+ ..|.+++.+.
T Consensus 40 ~~a~~~l~~~-~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~ 88 (132)
T 3lte_A 40 FDAGIKLSTF-EPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSG 88 (132)
T ss_dssp HHHHHHHHHT-CCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECC
T ss_pred HHHHHHHHhc-CCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeC
Confidence 3444556666 899999998765 344454432 3455555443
No 137
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=31.17 E-value=67 Score=23.56 Aligned_cols=41 Identities=15% Similarity=0.099 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHHc-------CCCcEEEecch
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANKF-------GFPRFVFYGMN 58 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-------gIP~i~~~~~~ 58 (395)
...+.+++. +||+||.|..++ -+..+++.+ .+|.++++...
T Consensus 40 ~a~~~~~~~-~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~~ 89 (128)
T 1jbe_A 40 DALNKLQAG-GYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEA 89 (128)
T ss_dssp HHHHHHTTC-CCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEEESSC
T ss_pred HHHHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEecCc
Confidence 334455565 899999998765 455555433 46777776543
No 138
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=31.01 E-value=49 Score=25.01 Aligned_cols=41 Identities=10% Similarity=-0.092 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHHc-----CCCcEEEecch
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANKF-----GFPRFVFYGMN 58 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~~ 58 (395)
...+.+++. +||+||.|..++ -+..+++.+ .+|.++++...
T Consensus 39 ~a~~~l~~~-~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~~ 86 (137)
T 3cfy_A 39 DAIQFIERS-KPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAHG 86 (137)
T ss_dssp HHHHHHHHH-CCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESSC
T ss_pred HHHHHHHhc-CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEecC
Confidence 344555565 899999998665 445555433 57777776543
No 139
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=30.87 E-value=74 Score=24.35 Aligned_cols=42 Identities=12% Similarity=-0.033 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCccEEEECCchh--hHHHHHHH-----cCCCcEEEecch
Q 048238 16 PHFERALESLPHVSFMVSDGFLW--WTLDSANK-----FGFPRFVFYGMN 58 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~-----lgIP~i~~~~~~ 58 (395)
....+.+++. +||+||.|..+. -+..+++. -.+|+++++...
T Consensus 41 ~~a~~~l~~~-~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 89 (153)
T 3cz5_A 41 GEAYRLYRET-TPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQ 89 (153)
T ss_dssp HHHHHHHHTT-CCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCC
T ss_pred HHHHHHHhcC-CCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCC
Confidence 3445556666 899999998654 34444433 258888876654
No 140
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=30.74 E-value=61 Score=24.42 Aligned_cols=43 Identities=9% Similarity=0.111 Sum_probs=26.7
Q ss_pred HHHHHHHh--cCCCccEEEECCchh--hHHHHHHHc-----CCCcEEEecchH
Q 048238 16 PHFERALE--SLPHVSFMVSDGFLW--WTLDSANKF-----GFPRFVFYGMNN 59 (395)
Q Consensus 16 ~~l~~~l~--~~~kpD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~~~ 59 (395)
....+.++ +. +||+||.|..+. .+..+.+.+ .+|.++++....
T Consensus 37 ~~a~~~~~~~~~-~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 88 (143)
T 3jte_A 37 TEGLRIFTENCN-SIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHGD 88 (143)
T ss_dssp HHHHHHHHHTTT-TCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEECTTC
T ss_pred HHHHHHHHhCCC-CCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 33444555 45 899999998655 344444332 588887766543
No 141
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=30.69 E-value=33 Score=31.41 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=24.2
Q ss_pred HHHHHHhcCCCccEEEECCchh-hHHHHHHHcCCCcEEEe
Q 048238 17 HFERALESLPHVSFMVSDGFLW-WTLDSANKFGFPRFVFY 55 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~-~~~~~A~~lgIP~i~~~ 55 (395)
.+++++. . +||+||+..... -...+.+++|||++.+.
T Consensus 88 n~E~Ila-l-~PDLIi~~~~~~~~~~~~~~~~GiPvv~~~ 125 (346)
T 2etv_A 88 DLESLIT-L-QPDVVFITYVDRXTAXDIQEXTGIPVVVLS 125 (346)
T ss_dssp CHHHHHH-H-CCSEEEEESCCHHHHHHHHHHHTSCEEEEC
T ss_pred CHHHHhc-C-CCCEEEEeCCccchHHHHHHhcCCcEEEEe
Confidence 4455554 4 899999865432 22335577899999874
No 142
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=30.60 E-value=34 Score=33.19 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCccEEEECCchhhHHHHHHHcCCCcEEE
Q 048238 15 QPHFERALESLPHVSFMVSDGFLWWTLDSANKFGFPRFVF 54 (395)
Q Consensus 15 ~~~l~~~l~~~~kpD~vI~D~~~~~~~~~A~~lgIP~i~~ 54 (395)
...+++.+++. +||++|... ...-+|+++|||++.+
T Consensus 390 ~~el~~~i~~~-~pDL~ig~~---~~~~~a~k~gIP~~~~ 425 (483)
T 3pdi_A 390 ARVLLKTVDEY-QADILIAGG---RNMYTALKGRVPFLDI 425 (483)
T ss_dssp HHHHHHHHHHT-TCSEEECCG---GGHHHHHHTTCCBCCC
T ss_pred HHHHHHHHHhc-CCCEEEECC---chhHHHHHcCCCEEEe
Confidence 66788888888 999999865 4556899999998743
No 143
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=30.28 E-value=1.1e+02 Score=28.06 Aligned_cols=63 Identities=10% Similarity=0.043 Sum_probs=40.4
Q ss_pred CCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCHHHHhcccCccceee
Q 048238 191 GSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQKEILWHESVQGFLS 270 (395)
Q Consensus 191 ~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~It 270 (395)
.+.+.+|.+|.++ ..+++.+...|.+++..-... . ... ... ..++...++++.+|+ ++.
T Consensus 148 gktvgIiGlG~IG-------~~vA~~l~~~G~~V~~~d~~~-~---~~~-----~~~---~~~~~l~ell~~aDv--V~l 206 (343)
T 2yq5_A 148 NLTVGLIGVGHIG-------SAVAEIFSAMGAKVIAYDVAY-N---PEF-----EPF---LTYTDFDTVLKEADI--VSL 206 (343)
T ss_dssp GSEEEEECCSHHH-------HHHHHHHHHTTCEEEEECSSC-C---GGG-----TTT---CEECCHHHHHHHCSE--EEE
T ss_pred CCeEEEEecCHHH-------HHHHHHHhhCCCEEEEECCCh-h---hhh-----hcc---ccccCHHHHHhcCCE--EEE
Confidence 3678899999998 456666777788865433221 1 111 112 234577889999999 888
Q ss_pred cCCc
Q 048238 271 HCGW 274 (395)
Q Consensus 271 hgG~ 274 (395)
|+-.
T Consensus 207 ~~Pl 210 (343)
T 2yq5_A 207 HTPL 210 (343)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8853
No 144
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=30.02 E-value=1.4e+02 Score=22.77 Aligned_cols=48 Identities=10% Similarity=-0.020 Sum_probs=31.5
Q ss_pred cCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHhCC
Q 048238 283 AGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMGG 339 (395)
Q Consensus 283 ~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~ 339 (395)
..+|+|++--..+. .......+. |+--.+. ..++.+.|..+|+.++..
T Consensus 74 ~~~pii~ls~~~~~-~~~~~~~~~-g~~~~l~-------kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 74 PDLPMILVTGHGDI-PMAVQAIQD-GAYDFIA-------KPFAADRLVQSARRAEEK 121 (155)
T ss_dssp TTSCEEEEECGGGH-HHHHHHHHT-TCCEEEE-------SSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCh-HHHHHHHhc-CCCeEEe-------CCCCHHHHHHHHHHHHHH
Confidence 47888877544433 233333355 7655565 368999999999998853
No 145
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=30.01 E-value=77 Score=23.78 Aligned_cols=29 Identities=10% Similarity=0.067 Sum_probs=18.4
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHH
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANK 46 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~ 46 (395)
...+.+++. +||+||.|..++ -+..+++.
T Consensus 45 ~al~~l~~~-~~dlvllD~~lp~~~g~~~~~~ 75 (140)
T 3c97_A 45 QALQAYQNR-QFDVIIMDIQMPVMDGLEAVSE 75 (140)
T ss_dssp HHHHHHHHS-CCSEEEECTTCCSSCHHHHHHH
T ss_pred HHHHHHhcC-CCCEEEEeCCCCCCcHHHHHHH
Confidence 344455566 899999998665 34444433
No 146
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=29.96 E-value=34 Score=33.32 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCccEEEECCchhhHHHHHHHcCCCcEE
Q 048238 15 QPHFERALESLPHVSFMVSDGFLWWTLDSANKFGFPRFV 53 (395)
Q Consensus 15 ~~~l~~~l~~~~kpD~vI~D~~~~~~~~~A~~lgIP~i~ 53 (395)
...+++.+++. +||++|... ....+|+++|||++-
T Consensus 406 ~~el~~~i~~~-~pDL~ig~~---~~~~ia~k~gIP~~~ 440 (492)
T 3u7q_A 406 GYEFEEFVKRI-KPDLIGSGI---KEKFIFQKMGIPFRE 440 (492)
T ss_dssp HHHHHHHHHHH-CCSEEEECH---HHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHhc-CCcEEEeCc---chhHHHHHcCCCEEe
Confidence 56788888888 999999865 456789999999984
No 147
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=29.82 E-value=98 Score=26.39 Aligned_cols=100 Identities=10% Similarity=0.013 Sum_probs=52.8
Q ss_pred chHHHHHhhhccCCCCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcC-CCCccchhHHHHhcCCCeEEecCCC
Q 048238 177 KPAWIRWLDRKLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRK-AESELGDGFEERVKGRGLVVRDWVN 255 (395)
Q Consensus 177 ~~~l~~~l~~~~~~~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p 255 (395)
-.++-++|.+. +..+|+.|..+. ..+..++....+-.++=+... +..+.+..+. .........+
T Consensus 58 A~~lg~~La~~-----g~~lVsGGg~Gi-----M~aa~~gAl~~gG~~iGV~~~~P~~~~~~~~~-----t~~~~~~~f~ 122 (217)
T 1wek_A 58 GYRLGRALAEA-----GFGVVTGGGPGV-----MEAVNRGAYEAGGVSVGLNIELPHEQKPNPYQ-----THALSLRYFF 122 (217)
T ss_dssp HHHHHHHHHHH-----TCEEEECSCSHH-----HHHHHHHHHHTTCCEEEEEECCTTCCCCCSCC-----SEEEEESCHH
T ss_pred HHHHHHHHHHC-----CCEEEeCChhhH-----HHHHHHHHHHcCCCEEEEeeCCcchhhccccC-----CcCcccCCHH
Confidence 45566677665 678888887542 344445444444443333111 1111111100 1123335555
Q ss_pred H-HHHhcccCccceeecCCchhHHHHHh----------cCCcEEecc
Q 048238 256 Q-KEILWHESVQGFLSHCGWNSALESIC----------AGVPILAWP 291 (395)
Q Consensus 256 q-~~ll~~~~~~~~IthgG~~s~~Ea~~----------~GvP~i~~P 291 (395)
. ..++...+-..++--||.||+-|... +++|++.+-
T Consensus 123 ~Rk~~m~~~sda~IvlpGG~GTL~El~e~lt~~qlg~~~~kPvvll~ 169 (217)
T 1wek_A 123 VRKVLFVRYAVGFVFLPGGFGTLDELSEVLVLLQTEKVHRFPVFLLD 169 (217)
T ss_dssp HHHHHHHHTEEEEEECSCCHHHHHHHHHHHHHHHTTSSCCCCEEEEC
T ss_pred HHHHHHHHhCCEEEEeCCCCcHHHHHHHHHHHHhhCCCCCCCEEEeC
Confidence 4 34454444456777899999888743 479999885
No 148
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=29.69 E-value=45 Score=27.40 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=24.4
Q ss_pred HHHhcCCCccEEEECCchh--hHHHHHHHc-----CCCcEEEecc
Q 048238 20 RALESLPHVSFMVSDGFLW--WTLDSANKF-----GFPRFVFYGM 57 (395)
Q Consensus 20 ~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~ 57 (395)
+.+++. +||+||.|..++ -+..+++.+ ++|+++++..
T Consensus 42 ~~~~~~-~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~ 85 (208)
T 1yio_A 42 EHRRPE-QHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAH 85 (208)
T ss_dssp HHCCTT-SCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESC
T ss_pred Hhhhcc-CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCC
Confidence 344455 899999998765 455555433 5888877654
No 149
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=29.46 E-value=67 Score=27.55 Aligned_cols=41 Identities=15% Similarity=0.007 Sum_probs=27.4
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHHc----CCCcEEEecch
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANKF----GFPRFVFYGMN 58 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l----gIP~i~~~~~~ 58 (395)
...+.+++. +||+||.|..++ -+..+++.+ .+|+++++...
T Consensus 72 ~al~~~~~~-~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~~ 118 (249)
T 3q9s_A 72 NGLIKARED-HPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTARD 118 (249)
T ss_dssp HHHHHHHHS-CCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEESCC
T ss_pred HHHHHHhcC-CCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEECCC
Confidence 334455666 899999998766 444555443 58888876654
No 150
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=29.46 E-value=1.1e+02 Score=26.74 Aligned_cols=40 Identities=18% Similarity=0.439 Sum_probs=30.5
Q ss_pred CCCeeEEEecccccCCHHHHHHHHHHHHh--CCCcEEEEEcC
Q 048238 191 GSSVMYVAFGSQAEISAQQLKEIATGLEQ--SKVNFLWVIRK 230 (395)
Q Consensus 191 ~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~--~~~~~i~~~~~ 230 (395)
++.+++|++||......+.+..+.+.+++ .+..|-|....
T Consensus 9 ~~aillv~hGS~~~~~~~~~~~~~~~l~~~~~~~~V~~af~~ 50 (269)
T 2xvy_A 9 KTGILLVAFGTSVEEARPALDKMGDRVRAAHPDIPVRWAYTA 50 (269)
T ss_dssp CEEEEEEECCCCCTTTTHHHHHHHHHHHHHCTTSCEEEEESC
T ss_pred CceEEEEeCCCCcHHHHHHHHHHHHHHHHHCCCCeEEeehhh
Confidence 35799999999876666688888888875 45778887653
No 151
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=29.26 E-value=2.4e+02 Score=23.12 Aligned_cols=148 Identities=11% Similarity=0.116 Sum_probs=75.7
Q ss_pred CCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCHHHHhcccCccceeec
Q 048238 192 SSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQKEILWHESVQGFLSH 271 (395)
Q Consensus 192 ~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~Ith 271 (395)
++.|-|-+||.+ +....++....|+..+..+-..+-+. ...|+.+.+..+. .....++.||.-
T Consensus 12 ~~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~ev~V~Sa-HR~p~~~~~~~~~--------------a~~~g~~ViIa~ 74 (174)
T 3kuu_A 12 GVKIAIVMGSKS--DWATMQFAADVLTTLNVPFHVEVVSA-HRTPDRLFSFAEQ--------------AEANGLHVIIAG 74 (174)
T ss_dssp CCCEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCT-TTCHHHHHHHHHH--------------TTTTTCSEEEEE
T ss_pred CCcEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEcc-cCCHHHHHHHHHH--------------HHhCCCcEEEEE
Confidence 456777788876 45677788888888887765444332 2344433221100 001112337777
Q ss_pred CCchhHHHHH---hcCCcEEeccCCCch--hHHH-HHHhh--hhceEEEeeccCCCCcCccCHHHHHHHHHHHhCCChhH
Q 048238 272 CGWNSALESI---CAGVPILAWPIMADQ--PLNA-RMVTE--EIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGEKGE 343 (395)
Q Consensus 272 gG~~s~~Ea~---~~GvP~i~~P~~~DQ--~~na-~~v~~--~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~ 343 (395)
.|...-+-++ ..-+|+|.+|...-. -..+ .-+.+ . |+.+..-.. ++.+.++...++..|-. +.|+
T Consensus 75 AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlS~vqmP~-GvPVatV~I--~~a~~~nAa~lAa~ILa-~~d~--- 147 (174)
T 3kuu_A 75 NGGAAHLPGMLAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPR-GIPVGTLAI--GKAGAANAALLAAQILA-LHDT--- 147 (174)
T ss_dssp EESSCCHHHHHHHTCSSCEEEEEECCTTTTTHHHHHHHHTCCT-TSCCEECCS--SHHHHHHHHHHHHHHHH-TTCH---
T ss_pred CChhhhhHHHHHhccCCCEEEeeCCCCCCCCHHHHHHhhhCCC-CCeeEEEEe--CCccchHHHHHHHHHHc-CCCH---
Confidence 7654333332 245899999984321 1222 12222 2 542222110 00022445555554433 3566
Q ss_pred HHHHHHHHHHHHHHHhhhhC
Q 048238 344 KARTKVKELSEIARKAMEEE 363 (395)
Q Consensus 344 ~~~~~a~~l~~~~~~~~~~~ 363 (395)
.++++.+.+++..++.+.+.
T Consensus 148 ~l~~kl~~~r~~~~~~v~~~ 167 (174)
T 3kuu_A 148 ELAGRLAHWRQSQTDDVLDN 167 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 68888888887777655444
No 152
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=29.09 E-value=63 Score=26.80 Aligned_cols=42 Identities=7% Similarity=-0.022 Sum_probs=27.7
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHHc-----CCCcEEEecchH
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANKF-----GFPRFVFYGMNN 59 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~~~ 59 (395)
...+.+++. +||+||.|..++ -+..+++.+ .+|+++++....
T Consensus 37 ~a~~~~~~~-~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~ 85 (225)
T 1kgs_A 37 EGMYMALNE-PFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALSD 85 (225)
T ss_dssp HHHHHHHHS-CCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSCH
T ss_pred HHHHHHhcC-CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 344555666 899999998765 344444332 688888876543
No 153
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=29.00 E-value=48 Score=28.56 Aligned_cols=35 Identities=6% Similarity=0.085 Sum_probs=23.4
Q ss_pred HHHhcCCCccEEEECCchh--hHHHHHHHcCCCcEEEe
Q 048238 20 RALESLPHVSFMVSDGFLW--WTLDSANKFGFPRFVFY 55 (395)
Q Consensus 20 ~~l~~~~kpD~vI~D~~~~--~~~~~A~~lgIP~i~~~ 55 (395)
|.|.+. +||+||+..... -...--++.|||++.+.
T Consensus 53 E~i~~l-~PDlIi~~~~~~~~~~~~~L~~~gipvv~~~ 89 (255)
T 3md9_A 53 EGILAM-KPTMLLVSELAQPSLVLTQIASSGVNVVTVP 89 (255)
T ss_dssp HHHHTT-CCSEEEEETTCSCHHHHHHHHHTTCEEEEEC
T ss_pred HHHHcc-CCCEEEEcCCcCchhHHHHHHHcCCcEEEeC
Confidence 334455 899999887543 22334467899999874
No 154
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=28.92 E-value=42 Score=25.33 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCCccEEEECCchh--hHHHHHHH-------cCCCcEEEecc
Q 048238 16 PHFERALESLPHVSFMVSDGFLW--WTLDSANK-------FGFPRFVFYGM 57 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~-------lgIP~i~~~~~ 57 (395)
....+.+++. +||+||.|..+. -+..+++. -++|.++++..
T Consensus 36 ~~a~~~~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 85 (140)
T 3n53_A 36 KEALEQIDHH-HPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSS 85 (140)
T ss_dssp HHHHHHHHHH-CCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC
T ss_pred HHHHHHHhcC-CCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecC
Confidence 3444556666 899999998654 23333322 35787777554
No 155
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=28.82 E-value=65 Score=29.76 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=25.8
Q ss_pred CCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcC
Q 048238 192 SSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRK 230 (395)
Q Consensus 192 ~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~ 230 (395)
..+++++.|+.+-. .-...++++|.+.|+.|.+.++.
T Consensus 21 ~rIl~~~~~~~GHv--~p~l~La~~L~~~Gh~V~v~~~~ 57 (415)
T 3rsc_A 21 AHLLIVNVASHGLI--LPTLTVVTELVRRGHRVSYVTAG 57 (415)
T ss_dssp CEEEEECCSCHHHH--GGGHHHHHHHHHTTCEEEEEECG
T ss_pred CEEEEEeCCCcccc--ccHHHHHHHHHHCCCEEEEEeCH
Confidence 35777777765321 22456888898899999888854
No 156
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=28.55 E-value=82 Score=24.04 Aligned_cols=32 Identities=13% Similarity=0.022 Sum_probs=21.9
Q ss_pred CccEEEECCchh--hHHHHHHHc-------CCCcEEEecch
Q 048238 27 HVSFMVSDGFLW--WTLDSANKF-------GFPRFVFYGMN 58 (395)
Q Consensus 27 kpD~vI~D~~~~--~~~~~A~~l-------gIP~i~~~~~~ 58 (395)
+||+||.|..++ -+..+++.+ .+|.++++...
T Consensus 61 ~~dlillD~~lp~~~g~~l~~~l~~~~~~~~~piiils~~~ 101 (149)
T 1i3c_A 61 RPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSH 101 (149)
T ss_dssp CCSEEEECSCCSSSCHHHHHHHHHHCTTTTTSCEEEEESCC
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHhCcCcCCCeEEEEECCC
Confidence 799999998765 344444332 57888876654
No 157
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: YES; 1.60A {Streptomyces avermitilis}
Probab=28.53 E-value=74 Score=27.60 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=28.6
Q ss_pred HHHHHHHHhcC-CCccEEEECCchh-------hHHHHHHHcCCCcEEEe
Q 048238 15 QPHFERALESL-PHVSFMVSDGFLW-------WTLDSANKFGFPRFVFY 55 (395)
Q Consensus 15 ~~~l~~~l~~~-~kpD~vI~D~~~~-------~~~~~A~~lgIP~i~~~ 55 (395)
.|.+.+++++. .+||++++|..-. -+..+.-.+++|+|..-
T Consensus 94 ~P~ll~al~~L~~~PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVA 142 (237)
T 3goc_A 94 IPTVLAALDALPCPPGLIVCDGYGVAHPRRFGLASHLGVLTGLPTIGVA 142 (237)
T ss_dssp HHHHHHHHHTSSSCCSEEEEESCSSCSTTSCCHHHHHHHHHCSCEEEEE
T ss_pred HHHHHHHHHhcCCCCCEEEEeCceeecCCCcchhheeeeecCCCEEeee
Confidence 46677777765 4799999996432 33445667889988763
No 158
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=28.48 E-value=70 Score=22.69 Aligned_cols=41 Identities=15% Similarity=-0.059 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCCccEEEECCchh--hHHHHHHH-------cCCCcEEEecc
Q 048238 16 PHFERALESLPHVSFMVSDGFLW--WTLDSANK-------FGFPRFVFYGM 57 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~-------lgIP~i~~~~~ 57 (395)
....+.+++. +||+||.|.... -+..+.+. -++|+++++..
T Consensus 35 ~~~~~~l~~~-~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 35 STALDQLDLL-QPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp HHHHHHHHHH-CCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESS
T ss_pred HHHHHHHHhc-CCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCC
Confidence 3444555666 899999997654 33333322 35888877654
No 159
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=28.44 E-value=49 Score=25.44 Aligned_cols=42 Identities=5% Similarity=-0.157 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCccEEEECCchh--hHHHHHHHc-----CCCcEEEecch
Q 048238 16 PHFERALESLPHVSFMVSDGFLW--WTLDSANKF-----GFPRFVFYGMN 58 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~~ 58 (395)
....+.+++. +||+||.|..+. -+..+.+.+ .+|+++++...
T Consensus 51 ~~a~~~l~~~-~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 99 (152)
T 3eul_A 51 AAALELIKAH-LPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHD 99 (152)
T ss_dssp HHHHHHHHHH-CCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred HHHHHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccC
Confidence 3445556666 899999998654 344444332 57777776554
No 160
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=28.43 E-value=81 Score=23.32 Aligned_cols=42 Identities=10% Similarity=-0.137 Sum_probs=27.4
Q ss_pred HHHHHHHhc-------CCCccEEEECCchh--hHHHHHHH-------cCCCcEEEecch
Q 048238 16 PHFERALES-------LPHVSFMVSDGFLW--WTLDSANK-------FGFPRFVFYGMN 58 (395)
Q Consensus 16 ~~l~~~l~~-------~~kpD~vI~D~~~~--~~~~~A~~-------lgIP~i~~~~~~ 58 (395)
....+.+++ . +||+||.|..+. .+..+.+. -++|+++++...
T Consensus 38 ~~a~~~l~~~~~~~~~~-~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 38 MEAMAYLRQEGEYANAS-RPDLILLXLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp HHHHHHHTTCGGGGSCC-CCSEEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCC
T ss_pred HHHHHHHHcccccccCC-CCcEEEEecCCCcccHHHHHHHHHcCcccccccEEEEecCC
Confidence 444555665 5 899999998665 44444433 358888887654
No 161
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=28.33 E-value=2.4e+02 Score=22.84 Aligned_cols=146 Identities=10% Similarity=0.102 Sum_probs=72.9
Q ss_pred CCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCHHHHhcccCccceeec
Q 048238 192 SSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQKEILWHESVQGFLSH 271 (395)
Q Consensus 192 ~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~Ith 271 (395)
++.|-|-+||.+ +....++....|+..|..+-..+-+. ...|+.+.+..+ =.....++.+|.-
T Consensus 3 ~~~V~Iimgs~S--D~~v~~~a~~~l~~~gi~~ev~V~Sa-HR~p~~~~~~~~--------------~a~~~g~~ViIa~ 65 (163)
T 3ors_A 3 AMKVAVIMGSSS--DWKIMQESCNMLDYFEIPYEKQVVSA-HRTPKMMVQFAS--------------EARERGINIIIAG 65 (163)
T ss_dssp CCCEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECCT-TTSHHHHHHHHH--------------HTTTTTCCEEEEE
T ss_pred CCeEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEECC-cCCHHHHHHHHH--------------HHHhCCCcEEEEE
Confidence 456777788876 55677788888888887764444332 234443322110 0011112237777
Q ss_pred CCchhHHHHH---hcCCcEEeccCCCch--hHHHH-HHhhh-hceEEEeeccCCCCcCccCHHHHHHHHHHHhCCChhHH
Q 048238 272 CGWNSALESI---CAGVPILAWPIMADQ--PLNAR-MVTEE-IKVALRVETCDGSVRGFVKWQGLEKTVRELMGGEKGEK 344 (395)
Q Consensus 272 gG~~s~~Ea~---~~GvP~i~~P~~~DQ--~~na~-~v~~~-lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 344 (395)
.|...-+-++ ..-.|+|.+|..... -..+. -+.+. -|+.+..-.- ++.+..++..++..|-. +.|+ .
T Consensus 66 AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlS~vqmp~GvPVatV~I--~~a~~~nAa~lAa~Il~-~~d~---~ 139 (163)
T 3ors_A 66 AGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAI--GAAGAKNAGILAARMLS-IQNP---S 139 (163)
T ss_dssp EESSCCHHHHHHHHCSSCEEEEEECCTTTTTHHHHHHHHTCCTTSCCEECCS--THHHHHHHHHHHHHHHH-TTCT---H
T ss_pred CCchhhhHHHHHhccCCCEEEeeCCCCCCCCHHHHHHHhhCCCCCceEEEEc--CCcccHHHHHHHHHHHh-CCCH---H
Confidence 6654333222 356899999984331 12221 12221 0442222110 00023455555554433 3566 6
Q ss_pred HHHHHHHHHHHHHHhh
Q 048238 345 ARTKVKELSEIARKAM 360 (395)
Q Consensus 345 ~~~~a~~l~~~~~~~~ 360 (395)
++++.+.+++..++.+
T Consensus 140 l~~kl~~~r~~~~~~v 155 (163)
T 3ors_A 140 LVEKLNQYESSLIQKV 155 (163)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777666443
No 162
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=27.88 E-value=43 Score=31.52 Aligned_cols=35 Identities=20% Similarity=0.461 Sum_probs=27.2
Q ss_pred HHHHhcccCccceeecCCchhHHHHHhc----CC-cEEeccC
Q 048238 256 QKEILWHESVQGFLSHCGWNSALESICA----GV-PILAWPI 292 (395)
Q Consensus 256 q~~ll~~~~~~~~IthgG~~s~~Ea~~~----Gv-P~i~~P~ 292 (395)
...+-..+++ +|+-||=||+..++.. ++ |++++..
T Consensus 108 ~~~~~~~~Dl--VIvlGGDGTlL~aa~~~~~~~vpPiLGIN~ 147 (388)
T 3afo_A 108 EQDIVNRTDL--LVTLGGDGTILHGVSMFGNTQVPPVLAFAL 147 (388)
T ss_dssp HHHHHHHCSE--EEEEESHHHHHHHHHTTTTSCCCCEEEEEC
T ss_pred hhhcccCCCE--EEEEeCcHHHHHHHHHhcccCCCeEEEEEC
Confidence 4445566788 9999999999999653 67 7998864
No 163
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=27.39 E-value=54 Score=31.51 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCccEEEECCchhhHHHHHHHcCCCcEEE
Q 048238 15 QPHFERALESLPHVSFMVSDGFLWWTLDSANKFGFPRFVF 54 (395)
Q Consensus 15 ~~~l~~~l~~~~kpD~vI~D~~~~~~~~~A~~lgIP~i~~ 54 (395)
...+++++++. +||++|.+.. ...+|+++|||++.+
T Consensus 374 ~~~l~~~i~~~-~pDl~ig~~~---~~~~a~k~gip~~~~ 409 (458)
T 1mio_B 374 FFDVHQWIKNE-GVDLLISNTY---GKFIAREENIPFVRF 409 (458)
T ss_dssp HHHHHHHHHHS-CCSEEEESGG---GHHHHHHHTCCEEEC
T ss_pred HHHHHHHHHhc-CCCEEEeCcc---hHHHHHHcCCCEEEe
Confidence 45677888888 9999998873 466899999999855
No 164
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=27.39 E-value=70 Score=26.67 Aligned_cols=40 Identities=13% Similarity=-0.021 Sum_probs=25.8
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHHc-----CCCcEEEecc
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANKF-----GFPRFVFYGM 57 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~ 57 (395)
...+.+++. +||+||.|..++ -+..+++.+ ++|+++++..
T Consensus 42 ~a~~~~~~~-~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~ 88 (233)
T 1ys7_A 42 EALRSATEN-RPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSAR 88 (233)
T ss_dssp HHHHHHHHS-CCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECC
T ss_pred HHHHHHHhC-CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEcC
Confidence 344555666 899999998765 344444332 6888777553
No 165
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=27.00 E-value=89 Score=26.82 Aligned_cols=76 Identities=12% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHhcccCccceeecCCchhHHHHHhcCCcEEeccC-----------------------CCchhHHHHHHhhhhceEEEe
Q 048238 257 KEILWHESVQGFLSHCGWNSALESICAGVPILAWPI-----------------------MADQPLNARMVTEEIKVALRV 313 (395)
Q Consensus 257 ~~ll~~~~~~~~IthgG~~s~~Ea~~~GvP~i~~P~-----------------------~~DQ~~na~~v~~~lg~g~~~ 313 (395)
...+....+..+|+.||........ .++|+|-++. +......+..+.+.+|+-+..
T Consensus 56 ~~~~~~~~~dVIISRGgta~~Lr~~-~~iPVV~I~vs~~Dil~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~ 134 (225)
T 2pju_A 56 RKKLANERCDAIIAAGSNGAYLKSR-LSVPVILIKPSGYDVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQ 134 (225)
T ss_dssp HHHTTTSCCSEEEEEHHHHHHHHTT-CSSCEEEECCCHHHHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEE
T ss_pred HHHHhcCCCeEEEeCChHHHHHHhh-CCCCEEEecCCHHHHHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCceEE
Q ss_pred eccCCCCcCccCHHHHHHHHHHHhCCC
Q 048238 314 ETCDGSVRGFVKWQGLEKTVRELMGGE 340 (395)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~i~~~l~~~ 340 (395)
. .--+.+++...|+++..+.
T Consensus 135 ~-------~~~~~ee~~~~i~~l~~~G 154 (225)
T 2pju_A 135 R-------SYITEEDARGQINELKANG 154 (225)
T ss_dssp E-------EESSHHHHHHHHHHHHHTT
T ss_pred E-------EeCCHHHHHHHHHHHHHCC
No 166
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=26.93 E-value=56 Score=25.10 Aligned_cols=41 Identities=17% Similarity=0.067 Sum_probs=22.1
Q ss_pred HHHHHHHhc-CCCccEEEECCchh--hHHHHHHHc-----CCCcEEEecc
Q 048238 16 PHFERALES-LPHVSFMVSDGFLW--WTLDSANKF-----GFPRFVFYGM 57 (395)
Q Consensus 16 ~~l~~~l~~-~~kpD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~ 57 (395)
....+.+++ . +||+||.|..+. .+..+.+.+ ++|+++++..
T Consensus 39 ~~a~~~l~~~~-~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~ 87 (154)
T 2qsj_A 39 SDALAFLEADN-TVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALISGE 87 (154)
T ss_dssp HHHHHHHHTTC-CCSEEEECC------CHHHHHHHHHHCTTSEEEEC---
T ss_pred HHHHHHHhccC-CCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEEEEeCC
Confidence 445556666 6 899999998654 333334332 5777776544
No 167
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=26.61 E-value=89 Score=26.02 Aligned_cols=36 Identities=17% Similarity=0.097 Sum_probs=27.8
Q ss_pred HHhcCCCccEEEECCchhhHHHHHHHcCCCcEEEecchHH
Q 048238 21 ALESLPHVSFMVSDGFLWWTLDSANKFGFPRFVFYGMNNY 60 (395)
Q Consensus 21 ~l~~~~kpD~vI~D~~~~~~~~~A~~lgIP~i~~~~~~~~ 60 (395)
.+++. .+|+||.|. .+..+|+++|+|.+.+.+..-.
T Consensus 137 ~l~~~-G~~vvVG~~---~~~~~A~~~Gl~~vli~sg~eS 172 (196)
T 2q5c_A 137 KVKTE-NIKIVVSGK---TVTDEAIKQGLYGETINSGEES 172 (196)
T ss_dssp HHHHT-TCCEEEECH---HHHHHHHHTTCEEEECCCCHHH
T ss_pred HHHHC-CCeEEECCH---HHHHHHHHcCCcEEEEecCHHH
Confidence 33444 899999987 3467899999999999875443
No 168
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=26.55 E-value=54 Score=25.27 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=25.1
Q ss_pred HHHhcCCCccEEEECCchh--hHHHHHHHc-----CCCcEEEecchH
Q 048238 20 RALESLPHVSFMVSDGFLW--WTLDSANKF-----GFPRFVFYGMNN 59 (395)
Q Consensus 20 ~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~~~ 59 (395)
+.+++. +||+||.|..+. .+..+.+.+ ++|+++++....
T Consensus 41 ~~l~~~-~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~ 86 (155)
T 1qkk_A 41 AGLSAD-FAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGD 86 (155)
T ss_dssp HTCCTT-CCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGG
T ss_pred HHHHhC-CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 333444 899999998654 344444332 689888876544
No 169
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=26.37 E-value=91 Score=23.39 Aligned_cols=39 Identities=10% Similarity=-0.031 Sum_probs=24.3
Q ss_pred HHHHHHhc-CCCccEEEECCchh---hHHHHHHH----cCCCcEEEec
Q 048238 17 HFERALES-LPHVSFMVSDGFLW---WTLDSANK----FGFPRFVFYG 56 (395)
Q Consensus 17 ~l~~~l~~-~~kpD~vI~D~~~~---~~~~~A~~----lgIP~i~~~~ 56 (395)
...+.+++ . +||+||.|..++ -+..+++. -.+|+++++.
T Consensus 40 ~a~~~l~~~~-~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~ 86 (140)
T 3h5i_A 40 AAVEKVSGGW-YPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTA 86 (140)
T ss_dssp HHHHHHHTTC-CCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEES
T ss_pred HHHHHHhcCC-CCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEEC
Confidence 33444554 5 899999998653 34444433 4688777755
No 170
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=26.24 E-value=97 Score=28.01 Aligned_cols=94 Identities=13% Similarity=0.124 Sum_probs=51.6
Q ss_pred eeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCHHHHhcccCccceeecCC
Q 048238 194 VMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQKEILWHESVQGFLSHCG 273 (395)
Q Consensus 194 vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~IthgG 273 (395)
+..|..|++.. ..+.++ ..+..++.+++....+..+.+.+....-++-...|....++|..+++-+++-..-
T Consensus 5 vgiiG~G~~~~-------~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp 76 (337)
T 3ip3_A 5 ICVIGSSGHFR-------YALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTV 76 (337)
T ss_dssp EEEECSSSCHH-------HHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSS
T ss_pred EEEEccchhHH-------HHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence 55666666642 233334 5566777777653212222333322112322234556788998765544554333
Q ss_pred ch----hHHHHHhcCCcEEe-ccCCCc
Q 048238 274 WN----SALESICAGVPILA-WPIMAD 295 (395)
Q Consensus 274 ~~----s~~Ea~~~GvP~i~-~P~~~D 295 (395)
.. -+.+|+.+|++++| -|+..+
T Consensus 77 ~~~H~~~~~~al~aGkhVl~EKPla~~ 103 (337)
T 3ip3_A 77 FSLNGKILLEALERKIHAFVEKPIATT 103 (337)
T ss_dssp HHHHHHHHHHHHHTTCEEEECSSSCSS
T ss_pred cchHHHHHHHHHHCCCcEEEeCCCCCC
Confidence 33 37788999999886 377653
No 171
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=26.15 E-value=52 Score=29.60 Aligned_cols=38 Identities=11% Similarity=0.126 Sum_probs=23.8
Q ss_pred HHHHHHhcCCCccEEEECCchh-hHHHHHHHcCCCcEEEec
Q 048238 17 HFERALESLPHVSFMVSDGFLW-WTLDSANKFGFPRFVFYG 56 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~-~~~~~A~~lgIP~i~~~~ 56 (395)
.+++++ .. +||+||...... -...--++.|||++.+..
T Consensus 76 n~E~i~-~l-~PDlIi~~~~~~~~~~~~L~~~Gipvv~~~~ 114 (326)
T 3psh_A 76 NIESLL-AL-KPDVVFVTNYAPSEMIKQISDVNIPVVAISL 114 (326)
T ss_dssp CHHHHH-HT-CCSEEEEETTCCHHHHHHHHTTTCCEEEECS
T ss_pred CHHHHH-cc-CCCEEEEeCCCChHHHHHHHHcCCCEEEEec
Confidence 344444 45 899999875432 223334678999998754
No 172
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=25.77 E-value=66 Score=23.18 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=24.7
Q ss_pred HHhcCCCccEEEECCchh--hHHHHHHHc----CCCcEEEecchH
Q 048238 21 ALESLPHVSFMVSDGFLW--WTLDSANKF----GFPRFVFYGMNN 59 (395)
Q Consensus 21 ~l~~~~kpD~vI~D~~~~--~~~~~A~~l----gIP~i~~~~~~~ 59 (395)
.+.+. +||+||.|..++ -+..+++.+ .+|.++++....
T Consensus 40 ~~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~ 83 (121)
T 1zh2_A 40 EAATR-KPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSE 83 (121)
T ss_dssp HHHHH-CCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCCS
T ss_pred HHhcC-CCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEECCCC
Confidence 34444 799999998665 345555443 578887766543
No 173
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=25.70 E-value=1e+02 Score=21.66 Aligned_cols=47 Identities=26% Similarity=0.256 Sum_probs=32.0
Q ss_pred cCCcEEeccCCCchhH-HHH--HHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHh
Q 048238 283 AGVPILAWPIMADQPL-NAR--MVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELM 337 (395)
Q Consensus 283 ~GvP~i~~P~~~DQ~~-na~--~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l 337 (395)
.|+|.+++--.+.|.. |-. ...+. |+..-+-+ ..+++++.+.+++.|
T Consensus 50 ngkplvvfvngasqndvnefqneakke-gvsydvlk-------stdpeeltqrvrefl 99 (112)
T 2lnd_A 50 NGKPLVVFVNGASQNDVNEFQNEAKKE-GVSYDVLK-------STDPEELTQRVREFL 99 (112)
T ss_dssp CCSCEEEEECSCCHHHHHHHHHHHHHH-TCEEEEEE-------CCCHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcccccHHHHHHHHHhc-Ccchhhhc-------cCCHHHHHHHHHHHH
Confidence 6889888777666644 332 22244 77776663 568899999888877
No 174
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=25.61 E-value=56 Score=27.33 Aligned_cols=29 Identities=10% Similarity=0.240 Sum_probs=23.7
Q ss_pred ccceeecCCchhHHHHHhcCCcEEeccCCC
Q 048238 265 VQGFLSHCGWNSALESICAGVPILAWPIMA 294 (395)
Q Consensus 265 ~~~~IthgG~~s~~Ea~~~GvP~i~~P~~~ 294 (395)
...+|++||........ .++|+|-+|..+
T Consensus 52 ~dVIISRGgta~~lr~~-~~iPVV~I~~s~ 80 (196)
T 2q5c_A 52 VDAIISRGATSDYIKKS-VSIPSISIKVTR 80 (196)
T ss_dssp CSEEEEEHHHHHHHHTT-CSSCEEEECCCH
T ss_pred CeEEEECChHHHHHHHh-CCCCEEEEcCCH
Confidence 33499999998888875 689999999853
No 175
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=25.43 E-value=92 Score=23.33 Aligned_cols=30 Identities=13% Similarity=-0.080 Sum_probs=20.2
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHHc
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANKF 47 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l 47 (395)
...+.+++. +||+||.|..+. -+..+++.+
T Consensus 46 ~al~~l~~~-~~dlvi~d~~l~~~~g~~~~~~l 77 (143)
T 2qv0_A 46 DVLKFLQHN-KVDAIFLDINIPSLDGVLLAQNI 77 (143)
T ss_dssp HHHHHHHHC-CCSEEEECSSCSSSCHHHHHHHH
T ss_pred HHHHHHHhC-CCCEEEEecCCCCCCHHHHHHHH
Confidence 344556666 899999998665 455556554
No 176
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=25.19 E-value=59 Score=24.38 Aligned_cols=38 Identities=5% Similarity=0.002 Sum_probs=24.9
Q ss_pred HHHHHHhc-CCCccEEEECCchh--hHHHHHHHc-----CCCcEEEe
Q 048238 17 HFERALES-LPHVSFMVSDGFLW--WTLDSANKF-----GFPRFVFY 55 (395)
Q Consensus 17 ~l~~~l~~-~~kpD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~ 55 (395)
...+.+++ . +||+||.|..+. -+..+.+.+ .+|.++++
T Consensus 50 ~al~~l~~~~-~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 50 AFFQHRSQLS-TCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp HHHHTGGGGG-SCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEE
T ss_pred HHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 33445555 6 899999998665 455555544 47777765
No 177
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=25.06 E-value=83 Score=23.46 Aligned_cols=42 Identities=7% Similarity=-0.003 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCccEEEECCchh--hHHHHHHH-------cCCCcEEEecch
Q 048238 16 PHFERALESLPHVSFMVSDGFLW--WTLDSANK-------FGFPRFVFYGMN 58 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~-------lgIP~i~~~~~~ 58 (395)
....+.+++. +||+||.|.... .+..+++. -.+|+++++...
T Consensus 44 ~~a~~~l~~~-~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 94 (143)
T 3cnb_A 44 FDAGDLLHTV-KPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGAL 94 (143)
T ss_dssp HHHHHHHHHT-CCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSC
T ss_pred HHHHHHHHhc-CCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCC
Confidence 3445566666 899999998654 34444433 246777776554
No 178
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=25.06 E-value=1.3e+02 Score=27.47 Aligned_cols=36 Identities=14% Similarity=0.294 Sum_probs=24.2
Q ss_pred CeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcC
Q 048238 193 SVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRK 230 (395)
Q Consensus 193 ~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~ 230 (395)
.+++++.|+.+-. .....++++|.+.|+.+.+.++.
T Consensus 22 rIl~~~~~~~Gh~--~~~~~la~~L~~~GheV~v~~~~ 57 (412)
T 3otg_A 22 RVLFASLGTHGHT--YPLLPLATAARAAGHEVTFATGE 57 (412)
T ss_dssp EEEEECCSSHHHH--GGGHHHHHHHHHTTCEEEEEECG
T ss_pred EEEEEcCCCcccH--HHHHHHHHHHHHCCCEEEEEccH
Confidence 5667765544321 22456888898899999888764
No 179
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=25.06 E-value=66 Score=27.43 Aligned_cols=42 Identities=5% Similarity=0.002 Sum_probs=27.8
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHHc-----CCCcEEEecchH
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANKF-----GFPRFVFYGMNN 59 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~~~ 59 (395)
...+.+++. +||+||.|..++ -+..+++.+ .+|.++++....
T Consensus 58 ~al~~~~~~-~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~ 106 (250)
T 3r0j_A 58 QALDRARET-RPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLTARDS 106 (250)
T ss_dssp HHHHHHHHH-CCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEECSTT
T ss_pred HHHHHHHhC-CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 344555565 899999998765 355555432 588888876543
No 180
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=24.94 E-value=46 Score=32.51 Aligned_cols=36 Identities=8% Similarity=0.119 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCccEEEECCchhhHHHHHHHcCCCcEEE
Q 048238 15 QPHFERALESLPHVSFMVSDGFLWWTLDSANKFGFPRFVF 54 (395)
Q Consensus 15 ~~~l~~~l~~~~kpD~vI~D~~~~~~~~~A~~lgIP~i~~ 54 (395)
...+++++++. +||++|.+. ....+|+++|||++.+
T Consensus 361 ~~el~~~i~~~-~pDl~ig~~---~~r~~a~k~gip~~~i 396 (511)
T 2xdq_B 361 HTVVGDAIARV-EPAAIFGTQ---MERHVGKRLNIPCGVI 396 (511)
T ss_dssp HHHHHHHHHHH-CCSEEEECH---HHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHHhc-CCCEEEecc---chHHHHHhcCCCeEec
Confidence 44778888888 999999765 4566889999999865
No 181
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=24.93 E-value=63 Score=27.79 Aligned_cols=36 Identities=14% Similarity=-0.113 Sum_probs=22.8
Q ss_pred HHHHHhcCCCccEEEECCchh--hHHHHHHHcCCCcEEEe
Q 048238 18 FERALESLPHVSFMVSDGFLW--WTLDSANKFGFPRFVFY 55 (395)
Q Consensus 18 l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~lgIP~i~~~ 55 (395)
++++ ... +||+||+..... -...--++.|||++.+.
T Consensus 52 ~E~i-~~l-~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~ 89 (256)
T 2r7a_A 52 SEGI-LSL-RPDSVITWQDAGPQIVLDQLRAQKVNVVTLP 89 (256)
T ss_dssp HHHH-HTT-CCSEEEEETTCSCHHHHHHHHHTTCEEEEEC
T ss_pred HHHH-Hcc-CCCEEEEcCCCCCHHHHHHHHHcCCcEEEec
Confidence 4444 445 899999865422 22333467899998774
No 182
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=24.76 E-value=49 Score=29.03 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=24.8
Q ss_pred HHHHhcCCCccEEEE----------CCchhhHHH---HHHHcCCCcEEEecc
Q 048238 19 ERALESLPHVSFMVS----------DGFLWWTLD---SANKFGFPRFVFYGM 57 (395)
Q Consensus 19 ~~~l~~~~kpD~vI~----------D~~~~~~~~---~A~~lgIP~i~~~~~ 57 (395)
..++.+. +||+||+ |.+++.... -|..+|||.|.++..
T Consensus 78 ~~l~~~~-~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~ 128 (251)
T 2phj_A 78 RVILEEK-KPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSAF 128 (251)
T ss_dssp HTTTTTC-CCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHhcCCC-CCCEEEECCcCCCcCCCCCccchHHHHHHHHHHcCCCeEEEEcC
Confidence 3344434 8999997 444443333 446689999999763
No 183
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=24.70 E-value=61 Score=26.75 Aligned_cols=41 Identities=22% Similarity=0.073 Sum_probs=26.5
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHHc-----CCCcEEEecch
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANKF-----GFPRFVFYGMN 58 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~~ 58 (395)
...+.+++. +||+||.|..++ -+..+++.+ .+|.++++...
T Consensus 42 ~al~~~~~~-~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ls~~~ 89 (215)
T 1a04_A 42 QGIELAESL-DPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSN 89 (215)
T ss_dssp HHHHHHHHH-CCSEEEEETTSTTSCHHHHHHHHHHSCCCSEEEEEECCC
T ss_pred HHHHHHHhc-CCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEECCC
Confidence 334455565 899999998765 455555433 57777776553
No 184
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=24.67 E-value=2.5e+02 Score=21.82 Aligned_cols=114 Identities=11% Similarity=0.035 Sum_probs=53.5
Q ss_pred hHHHHHhhhccCCCCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCC--CccchhHHHHhcCCCeEEecCCC
Q 048238 178 PAWIRWLDRKLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAE--SELGDGFEERVKGRGLVVRDWVN 255 (395)
Q Consensus 178 ~~l~~~l~~~~~~~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p 255 (395)
..+..++.+. +++.+|..|.... ..-..++..|.+.|++ +|.+.+.. .++ .++.+..-
T Consensus 4 ~~l~~ll~~p----~~IavIGas~~~g---~~G~~~~~~L~~~G~~-v~~vnp~~~g~~i----------~G~~~~~s-- 63 (145)
T 2duw_A 4 NDIAGILTST----RTIALVGASDKPD---RPSYRVMKYLLDQGYH-VIPVSPKVAGKTL----------LGQQGYAT-- 63 (145)
T ss_dssp CSHHHHHHHC----CCEEEESCCSCTT---SHHHHHHHHHHHHTCC-EEEECSSSTTSEE----------TTEECCSS--
T ss_pred HHHHHHHhCC----CEEEEECcCCCCC---ChHHHHHHHHHHCCCE-EEEeCCccccccc----------CCeeccCC--
Confidence 4466777543 6788887643211 1112445556666777 66665532 111 13322211
Q ss_pred HHHHhcccCccceeecCCc--hhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEE
Q 048238 256 QKEILWHESVQGFLSHCGW--NSALESICAGVPILAWPIMADQPLNARMVTEEIKVALR 312 (395)
Q Consensus 256 q~~ll~~~~~~~~IthgG~--~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~ 312 (395)
-.++-..+|+..+.+.... ..+.|++..|+..+++-....+..-++.+.+. |+-+.
T Consensus 64 l~el~~~~Dlvii~vp~~~v~~v~~~~~~~g~~~i~i~~~~~~~~l~~~a~~~-Gi~~i 121 (145)
T 2duw_A 64 LADVPEKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWLQLGVINEQAAVLAREA-GLSVV 121 (145)
T ss_dssp TTTCSSCCSEEECCSCSTHHHHHHHHHHHHTCCEEECCTTCCCHHHHHHHHTT-TCEEE
T ss_pred HHHcCCCCCEEEEEeCHHHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHc-CCEEE
Confidence 2233334555323222211 22334566787766554334444445555455 65543
No 185
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=24.63 E-value=93 Score=23.43 Aligned_cols=64 Identities=5% Similarity=-0.044 Sum_probs=39.9
Q ss_pred cccCccceeecCCchh---------HHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHH
Q 048238 261 WHESVQGFLSHCGWNS---------ALESICAGVPILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEK 331 (395)
Q Consensus 261 ~~~~~~~~IthgG~~s---------~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~ 331 (395)
..+++ +|..+|..| +-.|...|+|++++=-.+.+.. -..+.+. +..+ - ..+.+.|.+
T Consensus 37 ~~~~~--vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~~-P~~l~~~-a~~i--V--------~Wn~~~I~~ 102 (111)
T 1eiw_A 37 EDADA--VIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLENV-PPELEAV-SSEV--V--------GWNPHCIRD 102 (111)
T ss_dssp SSCSE--EEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSCC-CTTHHHH-CSEE--E--------CSCHHHHHH
T ss_pred ccCCE--EEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCcC-CHHHHhh-Ccee--c--------cCCHHHHHH
Confidence 45566 888888877 5567789999996644443311 1113233 3222 2 257899999
Q ss_pred HHHHHhC
Q 048238 332 TVRELMG 338 (395)
Q Consensus 332 ~i~~~l~ 338 (395)
+|+..+.
T Consensus 103 aI~~~~~ 109 (111)
T 1eiw_A 103 ALEDALD 109 (111)
T ss_dssp HHHHHHC
T ss_pred HHHhccC
Confidence 9988753
No 186
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=24.56 E-value=46 Score=24.97 Aligned_cols=41 Identities=12% Similarity=-0.002 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCccEEEECCchh--hHHHHHHHc-----CCCcEEEecc
Q 048238 16 PHFERALESLPHVSFMVSDGFLW--WTLDSANKF-----GFPRFVFYGM 57 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~ 57 (395)
....+.+++. +||+||.|..+. -+..+++.+ .+|.++++..
T Consensus 41 ~~a~~~l~~~-~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 88 (137)
T 3hdg_A 41 EEGERLFGLH-APDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISAF 88 (137)
T ss_dssp HHHHHHHHHH-CCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCCC
T ss_pred HHHHHHHhcc-CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEecC
Confidence 3445556666 899999998655 344444332 4676666544
No 187
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=24.56 E-value=1.1e+02 Score=22.99 Aligned_cols=33 Identities=9% Similarity=-0.063 Sum_probs=22.7
Q ss_pred CCCccEEEECCchh--hHHHHHHH-------cCCCcEEEecch
Q 048238 25 LPHVSFMVSDGFLW--WTLDSANK-------FGFPRFVFYGMN 58 (395)
Q Consensus 25 ~~kpD~vI~D~~~~--~~~~~A~~-------lgIP~i~~~~~~ 58 (395)
. +||+||.|..+. -+..+.+. -.+|+++++...
T Consensus 61 ~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~ 102 (149)
T 1k66_A 61 P-RPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSS 102 (149)
T ss_dssp C-CCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCC
T ss_pred C-CCcEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCC
Confidence 5 899999998665 44555543 357888876654
No 188
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=24.47 E-value=47 Score=32.62 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCccEEEECCchhhHHHHHHHcCCCcEEE
Q 048238 15 QPHFERALESLPHVSFMVSDGFLWWTLDSANKFGFPRFVF 54 (395)
Q Consensus 15 ~~~l~~~l~~~~kpD~vI~D~~~~~~~~~A~~lgIP~i~~ 54 (395)
...+++++++. +||++|.+. ....+|+++|||++.+
T Consensus 338 ~~el~~~i~~~-~pDL~ig~~---~~~~~a~~~giP~~~i 373 (525)
T 3aek_B 338 YLEVEKAIEAA-APELILGTQ---MERNIAKKLGLPCAVI 373 (525)
T ss_dssp HHHHHHHHHHH-CCSEEEECH---HHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHhhc-CCCEEEecc---hhHHHHHHcCCCEEEe
Confidence 45677888888 999999765 4566889999999864
No 189
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=24.38 E-value=74 Score=31.21 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCccEEEECCchhhHHHHHHHc-------CCCcEEE
Q 048238 15 QPHFERALESLPHVSFMVSDGFLWWTLDSANKF-------GFPRFVF 54 (395)
Q Consensus 15 ~~~l~~~l~~~~kpD~vI~D~~~~~~~~~A~~l-------gIP~i~~ 54 (395)
...+++.+++. +||++|....- ..+|+++ |||++..
T Consensus 427 ~~~l~~~i~~~-~pDLlig~s~~---k~~a~~~~~~~~~~giP~iri 469 (523)
T 3u7q_B 427 LWHLRSLVFTD-KPDFMIGNSYG---KFIQRDTLHKGKEFEVPLIRI 469 (523)
T ss_dssp HHHHHHHHHHT-CCSEEEECTTH---HHHHHHHHHHCGGGCCCEEEC
T ss_pred HHHHHHHHHhc-CCCEEEECccH---HHHHHHhhcccccCCCceEEe
Confidence 56778888888 99999998743 3466666 9998854
No 190
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=24.14 E-value=72 Score=26.58 Aligned_cols=42 Identities=10% Similarity=0.050 Sum_probs=27.7
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHH----cCCCcEEEecchH
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANK----FGFPRFVFYGMNN 59 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~----lgIP~i~~~~~~~ 59 (395)
...+.+++. +||+||.|..++ -+..+++. -.+|.++++....
T Consensus 39 ~al~~~~~~-~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt~~~~ 86 (230)
T 2oqr_A 39 AALAEFDRA-GADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 86 (230)
T ss_dssp HHHHHHHHH-CCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEECCHH
T ss_pred HHHHHHhcc-CCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEeCCCc
Confidence 344455565 899999998665 34444433 3789888876654
No 191
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=24.08 E-value=1.4e+02 Score=25.37 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=32.3
Q ss_pred chHHHHHhhhccCCCCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEE
Q 048238 177 KPAWIRWLDRKLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLW 226 (395)
Q Consensus 177 ~~~l~~~l~~~~~~~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~ 226 (395)
.+.+.+|+.. ...+++|-.|+...........+.++|++.|..+..
T Consensus 21 ~~~l~~~~~~----~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~ 66 (229)
T 1fy2_A 21 LPLIANQLNG----RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTG 66 (229)
T ss_dssp HHHHHHHHTT----CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEE
T ss_pred HHHHHHHhcC----CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 4557777754 367999988875333446778888999988876543
No 192
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=23.98 E-value=88 Score=26.63 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=23.3
Q ss_pred HHHHHhcCCCccEEEECCch--hhHHHHHHHcCCCcEEEecc
Q 048238 18 FERALESLPHVSFMVSDGFL--WWTLDSANKFGFPRFVFYGM 57 (395)
Q Consensus 18 l~~~l~~~~kpD~vI~D~~~--~~~~~~A~~lgIP~i~~~~~ 57 (395)
++++ ... +||+||+.... .-...--++.|||++.+...
T Consensus 50 ~E~i-~~l-~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~~~ 89 (245)
T 1n2z_A 50 LERI-VAL-KPDLVIAWRGGNAERQVDQLASLGIKVMWVDAT 89 (245)
T ss_dssp HHHH-HHT-CCSEEEECTTTSCHHHHHHHHHHTCCEEECCCC
T ss_pred HHHH-hcc-CCCEEEEeCCCCcHHHHHHHHHCCCcEEEeCCC
Confidence 3444 445 89999985321 12333446789999877543
No 193
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=23.90 E-value=2.2e+02 Score=22.89 Aligned_cols=85 Identities=11% Similarity=-0.008 Sum_probs=48.7
Q ss_pred CCCeeEEEecccccCC-HHHHHHHHHHHHhCCCcEEEEEcCCCCcc--chhHHHHhcCCCeEEecCCCHHHHhcccCccc
Q 048238 191 GSSVMYVAFGSQAEIS-AQQLKEIATGLEQSKVNFLWVIRKAESEL--GDGFEERVKGRGLVVRDWVNQKEILWHESVQG 267 (395)
Q Consensus 191 ~~~vv~vs~Gs~~~~~-~~~~~~l~~~l~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~ 267 (395)
-++++|++..=..... .....++.+.|++.|..+++ +..... ...+ |--....+..+++..
T Consensus 9 ~~~~~y~a~~~F~~~e~~~~~~~l~~~l~~~G~~v~~---P~~~~~~~~~~i-------------~~~d~~~i~~aD~vV 72 (161)
T 2f62_A 9 MRKIYIAGPAVFNPDMGASYYNKVRELLKKENVMPLI---PTDNEATEALDI-------------RQKNIQMIKDCDAVI 72 (161)
T ss_dssp CCEEEEESGGGGSTTTTHHHHHHHHHHHHTTTCEEEC---TTTTCCSSHHHH-------------HHHHHHHHHHCSEEE
T ss_pred hhceEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEC---CCccCcchHHHH-------------HHHHHHHHHhCCEEE
Confidence 3566665433334455 67788888899888876433 211000 0110 001234666677733
Q ss_pred ee-e-----cCCchhHHHH---HhcCCcEEecc
Q 048238 268 FL-S-----HCGWNSALES---ICAGVPILAWP 291 (395)
Q Consensus 268 ~I-t-----hgG~~s~~Ea---~~~GvP~i~~P 291 (395)
.+ + -.-.||..|. .+.|||++++-
T Consensus 73 A~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~ 105 (161)
T 2f62_A 73 ADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFT 105 (161)
T ss_dssp EECCCCSSSSCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred EEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 33 2 3457899996 77999999874
No 194
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=23.89 E-value=77 Score=23.73 Aligned_cols=40 Identities=10% Similarity=0.027 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCCccEEEECCchh--hHHHHHHHc-------CCCcEEEec
Q 048238 16 PHFERALESLPHVSFMVSDGFLW--WTLDSANKF-------GFPRFVFYG 56 (395)
Q Consensus 16 ~~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-------gIP~i~~~~ 56 (395)
....+.+++. +||+||.|..+. .+..+.+.+ .+|+++++.
T Consensus 41 ~~a~~~l~~~-~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~ 89 (142)
T 3cg4_A 41 GQCIDLLKKG-FSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTA 89 (142)
T ss_dssp HHHHHHHHTC-CCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEEC
T ss_pred HHHHHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEEC
Confidence 4455566666 899999997654 344444332 356665544
No 195
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=23.78 E-value=1e+02 Score=22.98 Aligned_cols=42 Identities=12% Similarity=0.085 Sum_probs=26.6
Q ss_pred HHHHHHHhc------CCCccEEEECCchh--hHHHHHHHc-------CCCcEEEecch
Q 048238 16 PHFERALES------LPHVSFMVSDGFLW--WTLDSANKF-------GFPRFVFYGMN 58 (395)
Q Consensus 16 ~~l~~~l~~------~~kpD~vI~D~~~~--~~~~~A~~l-------gIP~i~~~~~~ 58 (395)
....+.+++ . +||+||.|.... .+..+++.+ .+|+++++...
T Consensus 43 ~~a~~~l~~~~~~~~~-~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~ 99 (143)
T 2qvg_A 43 NQALDMLYGRNKENKI-HPKLILLDINIPKMNGIEFLKELRDDSSFTDIEVFVLTAAY 99 (143)
T ss_dssp HHHHHHHHTCTTCCCC-CCSEEEEETTCTTSCHHHHHHHHTTSGGGTTCEEEEEESCC
T ss_pred HHHHHHHHhcccccCC-CCCEEEEecCCCCCCHHHHHHHHHcCccccCCcEEEEeCCC
Confidence 344455654 5 899999998655 445555442 57777776543
No 196
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=23.46 E-value=68 Score=28.29 Aligned_cols=42 Identities=5% Similarity=-0.012 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCCccEEEECCchh------hHHHHHHHcCCCcEEEecc
Q 048238 15 QPHFERALESLPHVSFMVSDGFLW------WTLDSANKFGFPRFVFYGM 57 (395)
Q Consensus 15 ~~~l~~~l~~~~kpD~vI~D~~~~------~~~~~A~~lgIP~i~~~~~ 57 (395)
..-|.+++++. +||+||+-.-.. .+..+|..||+|.+...+.
T Consensus 101 a~~La~~i~~~-~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~~ 148 (264)
T 1o97_C 101 GRILTEVIKKE-APDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVAD 148 (264)
T ss_dssp HHHHHHHHHHH-CCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHHhc-CCCEEEEcCCccCCchhhHHHHHHHHhCCCcccceEE
Confidence 34566677777 899999876442 7788999999999988653
No 197
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=23.37 E-value=1.6e+02 Score=24.27 Aligned_cols=30 Identities=10% Similarity=0.175 Sum_probs=22.3
Q ss_pred CCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEE
Q 048238 192 SSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWV 227 (395)
Q Consensus 192 ~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~ 227 (395)
++++.|-+|+.. +..+..+|++.|..+.++
T Consensus 3 ~~I~iiD~g~~n------~~si~~al~~~G~~~~v~ 32 (211)
T 4gud_A 3 QNVVIIDTGCAN------ISSVKFAIERLGYAVTIS 32 (211)
T ss_dssp CCEEEECCCCTT------HHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEECCCCh------HHHHHHHHHHCCCEEEEE
Confidence 468888888763 356778889999887764
No 198
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=23.02 E-value=1.4e+02 Score=27.29 Aligned_cols=73 Identities=8% Similarity=0.101 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCHHHHhcccCccceeecCCchhHHHHHh--
Q 048238 205 ISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQKEILWHESVQGFLSHCGWNSALESIC-- 282 (395)
Q Consensus 205 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~IthgG~~s~~Ea~~-- 282 (395)
.+.+....|.+++.....+.||.+.+.+. -.++.++++...+-++|.. ||-++..+.++-+++
T Consensus 62 ~d~~Ra~dL~~a~~Dp~i~aI~~~rGG~g-------------~~rlL~~lD~~~i~~~PK~--~~GySDiTaL~~al~~~ 126 (331)
T 4e5s_A 62 SISSRVQDLHEAFRDPNVKAILTTLGGYN-------------SNGLLKYLDYDLIRENPKF--FCGYSDITALNNAIYTK 126 (331)
T ss_dssp CHHHHHHHHHHHHHCTTEEEEEESCCCSC-------------GGGGGGGCCHHHHHTSCCE--EEECGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcccccc-------------HHHHHhhcChhHHHhCCeE--EEEecchHHHHHHHHHh
Confidence 34577888999999888898888766411 1223344554555555655 777777777777766
Q ss_pred cCCcEEeccC
Q 048238 283 AGVPILAWPI 292 (395)
Q Consensus 283 ~GvP~i~~P~ 292 (395)
.|+.-+.-|.
T Consensus 127 ~G~~t~hGp~ 136 (331)
T 4e5s_A 127 TGLVTYSGPH 136 (331)
T ss_dssp HCBCEEECCC
T ss_pred hCCcEEEccc
Confidence 4777666665
No 199
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=22.79 E-value=71 Score=29.57 Aligned_cols=41 Identities=17% Similarity=0.124 Sum_probs=26.3
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHHc-----CCCcEEEecch
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANKF-----GFPRFVFYGMN 58 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~~ 58 (395)
...+.+++. +||+||.|..++ -+..+++.+ .+|.|+++...
T Consensus 40 ~al~~~~~~-~~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~lt~~~ 87 (394)
T 3eq2_A 40 QGLQIFESE-QPDLVICDLRMPQIDGLELIRRIRQTASETPIIVLSGAG 87 (394)
T ss_dssp HHHHHHHHS-CCSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEEC---C
T ss_pred HHHHHHhhC-CCCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEEEEcCC
Confidence 334555666 899999998776 455555543 58888776653
No 200
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=22.75 E-value=5.7e+02 Score=26.59 Aligned_cols=80 Identities=11% Similarity=0.071 Sum_probs=45.0
Q ss_pred eeecCCchhHHHHHhcC-C--c--EEeccCCCchhHHHHHHhhhhceEEEeeccCCCCcCccCHHHHHHHHHHHhCCChh
Q 048238 268 FLSHCGWNSALESICAG-V--P--ILAWPIMADQPLNARMVTEEIKVALRVETCDGSVRGFVKWQGLEKTVRELMGGEKG 342 (395)
Q Consensus 268 ~IthgG~~s~~Ea~~~G-v--P--~i~~P~~~DQ~~na~~v~~~lg~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 342 (395)
|+.||--+.+.|.++.. . | ++.+|-+++--.-...+ .+ -.++++.|.+++.+++....+
T Consensus 727 ~~~gGlgsaV~ell~~r~~~~~l~v~G~~d~G~tgtp~eLl-~~---------------~gld~~~Iv~~a~~~l~~~~~ 790 (845)
T 3ahc_A 727 FAYHSYAQDVRGLIYDRPNHDNFHVVGYKEQGSTTTPFDMV-RV---------------NDMDRYALQAAALKLIDADKY 790 (845)
T ss_dssp EEESSCHHHHHHHTTTSTTGGGEEEECCCSCCCSCCHHHHH-HT---------------TTCSHHHHHHHHHHHHHTTTT
T ss_pred eeecCcHHHHHHHHHhCCCCceEEEEeccCCCCCCCHHHHH-HH---------------hCcCHHHHHHHHHHHcchhhH
Confidence 45677777777877765 3 3 33444433222222222 22 357889999998888863334
Q ss_pred HHHHHHHHHHHHHHHHhhhhC
Q 048238 343 EKARTKVKELSEIARKAMEEE 363 (395)
Q Consensus 343 ~~~~~~a~~l~~~~~~~~~~~ 363 (395)
..+++..+......++.+.+.
T Consensus 791 ~~~~~~~~~~~~~~~~~~~~~ 811 (845)
T 3ahc_A 791 ADKIDELNAFRKKAFQFAVDN 811 (845)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555544555
No 201
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=22.71 E-value=62 Score=27.33 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=24.9
Q ss_pred HHHHhcCCCccEEEECCchh--hHHHHHHHc----CCCcEEEecc
Q 048238 19 ERALESLPHVSFMVSDGFLW--WTLDSANKF----GFPRFVFYGM 57 (395)
Q Consensus 19 ~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l----gIP~i~~~~~ 57 (395)
.+.+++. +||+||.|..++ -+..+++.+ ++|+++++..
T Consensus 42 l~~l~~~-~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt~~ 85 (238)
T 2gwr_A 42 LTAVREL-RPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTAK 85 (238)
T ss_dssp HHHHHHH-CCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEEET
T ss_pred HHHHHhC-CCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEeCC
Confidence 3445555 899999998665 344444433 6888877654
No 202
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=22.27 E-value=3.4e+02 Score=24.34 Aligned_cols=63 Identities=14% Similarity=0.080 Sum_probs=38.5
Q ss_pred CCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeE-EecCCCHHHHhcccCcccee
Q 048238 191 GSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLV-VRDWVNQKEILWHESVQGFL 269 (395)
Q Consensus 191 ~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pq~~ll~~~~~~~~I 269 (395)
.+.+-.|.+|.++ ..+++.+...|.+++..-... ... .++. ........++++.+|+ ++
T Consensus 139 g~tvGIiG~G~IG-------~~vA~~l~~~G~~V~~~dr~~-~~~----------~~~~~~~~~~~l~ell~~aDi--V~ 198 (315)
T 3pp8_A 139 EFSVGIMGAGVLG-------AKVAESLQAWGFPLRCWSRSR-KSW----------PGVESYVGREELRAFLNQTRV--LI 198 (315)
T ss_dssp TCCEEEECCSHHH-------HHHHHHHHTTTCCEEEEESSC-CCC----------TTCEEEESHHHHHHHHHTCSE--EE
T ss_pred CCEEEEEeeCHHH-------HHHHHHHHHCCCEEEEEcCCc-hhh----------hhhhhhcccCCHHHHHhhCCE--EE
Confidence 4678899999998 566777777888865433221 111 1111 1112235668888888 88
Q ss_pred ecCC
Q 048238 270 SHCG 273 (395)
Q Consensus 270 thgG 273 (395)
.|+-
T Consensus 199 l~~P 202 (315)
T 3pp8_A 199 NLLP 202 (315)
T ss_dssp ECCC
T ss_pred EecC
Confidence 8874
No 203
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=22.14 E-value=1.2e+02 Score=24.53 Aligned_cols=89 Identities=15% Similarity=0.076 Sum_probs=47.5
Q ss_pred HHHHhhhccCCCCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCHHHH
Q 048238 180 WIRWLDRKLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQKEI 259 (395)
Q Consensus 180 l~~~l~~~~~~~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~l 259 (395)
+.+.+.+. +.+.+++.|+... ....+...|...+.++....... ..+. .+...
T Consensus 32 ~~~~i~~a----~~I~i~G~G~S~~----~a~~~~~~l~~~g~~~~~~~~~~-----~~~~--------------~~~~~ 84 (187)
T 3sho_A 32 AVEAICRA----DHVIVVGMGFSAA----VAVFLGHGLNSLGIRTTVLTEGG-----STLT--------------ITLAN 84 (187)
T ss_dssp HHHHHHHC----SEEEEECCGGGHH----HHHHHHHHHHHTTCCEEEECCCT-----HHHH--------------HHHHT
T ss_pred HHHHHHhC----CEEEEEecCchHH----HHHHHHHHHHhcCCCEEEecCCc-----hhHH--------------HHHhc
Confidence 34445443 5666666676542 33344555556777766554211 1111 01222
Q ss_pred hcccCccceeecCCch-hHH----HHHhcCCcEEeccCCCc
Q 048238 260 LWHESVQGFLSHCGWN-SAL----ESICAGVPILAWPIMAD 295 (395)
Q Consensus 260 l~~~~~~~~IthgG~~-s~~----Ea~~~GvP~i~~P~~~D 295 (395)
+...++..+|++.|.+ .+. .+-..|.|+|++--..+
T Consensus 85 ~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~ 125 (187)
T 3sho_A 85 LRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSV 125 (187)
T ss_dssp CCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3344555599999965 222 33457999998854433
No 204
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=22.11 E-value=2.4e+02 Score=27.75 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=22.8
Q ss_pred ccceeecCC------chhHHHHHhcCCcEEecc
Q 048238 265 VQGFLSHCG------WNSALESICAGVPILAWP 291 (395)
Q Consensus 265 ~~~~IthgG------~~s~~Ea~~~GvP~i~~P 291 (395)
.+++++|.| .+.+.||.+.++|+|++-
T Consensus 69 ~~v~~~tsGpG~~N~~~gl~~A~~~~vPll~It 101 (590)
T 1v5e_A 69 LGVTVGSGGPGASHLINGLYDAAMDNIPVVAIL 101 (590)
T ss_dssp CCEEEECTTHHHHTTHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEeCcChHHHHHHHHHHHHHhcCCCEEEEc
Confidence 445999998 678999999999999874
No 205
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=22.02 E-value=82 Score=27.60 Aligned_cols=36 Identities=11% Similarity=0.023 Sum_probs=23.0
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHHcCCCcEEE
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANKFGFPRFVF 54 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~lgIP~i~~ 54 (395)
.+++ |... +||+||+..... -...--++.|||++.+
T Consensus 51 n~E~-i~~l-~PDLIi~~~~~~~~~~~~~L~~~gipvv~~ 88 (283)
T 2r79_A 51 AAEG-VLAL-RPDILIGTEEMGPPPVLKQLEGAGVRVETL 88 (283)
T ss_dssp CHHH-HHTT-CCSEEEECTTCCCHHHHHHHHHTTCCEEEC
T ss_pred CHHH-HHhc-CCCEEEEeCccCcHHHHHHHHHcCCcEEEe
Confidence 3444 4455 899999875321 2333446789998876
No 206
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=21.78 E-value=53 Score=24.09 Aligned_cols=32 Identities=6% Similarity=0.002 Sum_probs=21.5
Q ss_pred CccEEEECCchh--hHHHHHHH-------cCCCcEEEecch
Q 048238 27 HVSFMVSDGFLW--WTLDSANK-------FGFPRFVFYGMN 58 (395)
Q Consensus 27 kpD~vI~D~~~~--~~~~~A~~-------lgIP~i~~~~~~ 58 (395)
+||+||.|..++ -+..+.+. -++|.++++...
T Consensus 46 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 86 (127)
T 2jba_A 46 WPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARG 86 (127)
T ss_dssp CCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEETT
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEeCCC
Confidence 799999998665 34444433 257888776654
No 207
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=21.75 E-value=1.1e+02 Score=27.06 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=25.9
Q ss_pred HHHHHhcCCCccEEEECCchh---hHHHHHH----HcCCCcEEEecc
Q 048238 18 FERALESLPHVSFMVSDGFLW---WTLDSAN----KFGFPRFVFYGM 57 (395)
Q Consensus 18 l~~~l~~~~kpD~vI~D~~~~---~~~~~A~----~lgIP~i~~~~~ 57 (395)
..+.+++. +||+||.|..++ -|..+++ ...+|.|+++..
T Consensus 197 Al~~~~~~-~~dlvl~D~~MPd~mdG~e~~~~ir~~~~~piI~lT~~ 242 (286)
T 3n0r_A 197 ALEAVTRR-TPGLVLADIQLADGSSGIDAVKDILGRMDVPVIFITAF 242 (286)
T ss_dssp HHHHHHHC-CCSEEEEESCCTTSCCTTTTTHHHHHHTTCCEEEEESC
T ss_pred HHHHHHhC-CCCEEEEcCCCCCCCCHHHHHHHHHhcCCCCEEEEeCC
Confidence 33455666 899999999877 2333332 227999888764
No 208
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} PDB: 3kb6_A*
Probab=21.74 E-value=2e+02 Score=26.21 Aligned_cols=64 Identities=13% Similarity=0.120 Sum_probs=40.4
Q ss_pred CCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCHHHHhcccCccceee
Q 048238 191 GSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQKEILWHESVQGFLS 270 (395)
Q Consensus 191 ~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~It 270 (395)
.+.+..|.+|.++ ..+++.+...|.+++. +... ...... ..++ .+++..++++.+|+ ++.
T Consensus 141 g~tvgIiG~G~IG-------~~vA~~l~~~G~~V~~-~d~~---~~~~~~----~~g~---~~~~l~ell~~aDv--V~l 200 (334)
T 2pi1_A 141 RLTLGVIGTGRIG-------SRVAMYGLAFGMKVLC-YDVV---KREDLK----EKGC---VYTSLDELLKESDV--ISL 200 (334)
T ss_dssp GSEEEEECCSHHH-------HHHHHHHHHTTCEEEE-ECSS---CCHHHH----HTTC---EECCHHHHHHHCSE--EEE
T ss_pred CceEEEECcCHHH-------HHHHHHHHHCcCEEEE-ECCC---cchhhH----hcCc---eecCHHHHHhhCCE--EEE
Confidence 3678899999998 4566777777888653 3321 111111 1233 34557789999999 888
Q ss_pred cCCc
Q 048238 271 HCGW 274 (395)
Q Consensus 271 hgG~ 274 (395)
|+-.
T Consensus 201 ~~P~ 204 (334)
T 2pi1_A 201 HVPY 204 (334)
T ss_dssp CCCC
T ss_pred eCCC
Confidence 8743
No 209
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=21.68 E-value=2.2e+02 Score=23.62 Aligned_cols=140 Identities=10% Similarity=0.066 Sum_probs=75.3
Q ss_pred CCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCcc--chhHHHHhcCCCeEEecC-----CCHHHHhcccC
Q 048238 192 SSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESEL--GDGFEERVKGRGLVVRDW-----VNQKEILWHES 264 (395)
Q Consensus 192 ~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-----~pq~~ll~~~~ 264 (395)
+.+++.-.||+.... ..++++.|.+.|+.+-.+.......+ +..+ +... .+++..-| +.+.++...+|
T Consensus 9 k~IllgvTGs~aa~k---~~~l~~~L~~~g~~V~vv~T~~A~~fi~~~~~-~~l~-~~v~~~~~~~~~~~~hi~l~~~aD 83 (194)
T 1p3y_1 9 KKLLIGICGSISSVG---ISSYLLYFKSFFKEIRVVMTKTAEDLIPAHTV-SYFC-DHVYSEHGENGKRHSHVEIGRWAD 83 (194)
T ss_dssp CEEEEEECSCGGGGG---THHHHHHHTTTSSEEEEEECHHHHHHSCHHHH-GGGS-SEEECTTCSSSCCCCHHHHHHHCS
T ss_pred CEEEEEEECHHHHHH---HHHHHHHHHHCCCEEEEEEchhHHHHHHHHHH-HHhc-CCEeccccccCCCcCcccccccCC
Confidence 456666677775432 34455666666777655554321111 1111 1122 22332223 33555555555
Q ss_pred ccceeecCCchhHHHH-------------HhcCCcEEeccCCC----ch---hHHHHHHhhhhceEEEeeccCC------
Q 048238 265 VQGFLSHCGWNSALES-------------ICAGVPILAWPIMA----DQ---PLNARMVTEEIKVALRVETCDG------ 318 (395)
Q Consensus 265 ~~~~IthgG~~s~~Ea-------------~~~GvP~i~~P~~~----DQ---~~na~~v~~~lg~g~~~~~~~~------ 318 (395)
+ .+|.-|-+||+.-. +..++|+++.|-.. .. ..|...+.+. |+=+ +....+
T Consensus 84 ~-~vIaPaTanTlAKiA~GiaDnLlt~~a~a~~~pvvl~Pamn~~m~~~p~~~~Nl~~L~~~-G~~i-v~p~~g~~f~la 160 (194)
T 1p3y_1 84 I-YCIIPATANILGQTANGVAMNLVATTVLAHPHNTIFFPNMNDLMWNKTVVSRNIEQLRKD-GHIV-IEPVEIMAFEIA 160 (194)
T ss_dssp E-EEEEEECHHHHHHHHTTCCSSHHHHHHHHSSSCCEEEECCCHHHHTCHHHHHHHHHHHHH-TCEE-CCCBCCC-----
T ss_pred E-EEEeCCCHHHHHHHHhhccCCHHHHHHHHcCCCEEEEECCChhhcCCHHHHHHHHHHHHC-CCEE-ECCCCCcccccc
Confidence 3 47777887766543 55789999999632 22 4577778665 8743 332111
Q ss_pred ----CC-cCccCHHHHHHHHHHHhCC
Q 048238 319 ----SV-RGFVKWQGLEKTVRELMGG 339 (395)
Q Consensus 319 ----~~-~~~~~~~~l~~~i~~~l~~ 339 (395)
+. ..-.+.++|.+.+.+.+.+
T Consensus 161 cg~~g~~g~~~~~~~iv~~v~~~l~~ 186 (194)
T 1p3y_1 161 TGTRKPNRGLITPDKALLAIEKGFKE 186 (194)
T ss_dssp -------CBCCCHHHHHHHHHHHCC-
T ss_pred cCCcCcCCCCCCHHHHHHHHHHHhcc
Confidence 01 1224678888888877754
No 210
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=21.63 E-value=54 Score=27.53 Aligned_cols=40 Identities=8% Similarity=0.000 Sum_probs=25.6
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHHc-----CCCcEEEecc
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANKF-----GFPRFVFYGM 57 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l-----gIP~i~~~~~ 57 (395)
...+.+++. +||+||.|..++ .+..+++.+ .+|.++++..
T Consensus 38 ~al~~l~~~-~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~ 84 (225)
T 3c3w_A 38 EAMARVPAA-RPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLILTSY 84 (225)
T ss_dssp HHHHHHHHH-CCSEEEECSEETTEEHHHHHHHHHHHCTTCEEEEGGGS
T ss_pred HHHHHHhhc-CCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEECC
Confidence 344455565 899999998765 455555433 5777766554
No 211
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=21.38 E-value=2.8e+02 Score=21.32 Aligned_cols=115 Identities=7% Similarity=0.034 Sum_probs=56.6
Q ss_pred chHHHHHhhhccCCCCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCC--CCccchhHHHHhcCCCeEEecCC
Q 048238 177 KPAWIRWLDRKLDEGSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKA--ESELGDGFEERVKGRGLVVRDWV 254 (395)
Q Consensus 177 ~~~l~~~l~~~~~~~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 254 (395)
+.++.+++++ +++++.|..+... ...-..+++.|.+.|++ +|-+.+. ..++ .++.+..-
T Consensus 3 ~~~l~~ll~~----p~~vaVvGas~~~---g~~G~~~~~~l~~~G~~-v~~vnp~~~~~~i----------~G~~~~~s- 63 (140)
T 1iuk_A 3 DQELRAYLSQ----AKTIAVLGAHKDP---SRPAHYVPRYLREQGYR-VLPVNPRFQGEEL----------FGEEAVAS- 63 (140)
T ss_dssp HHHHHHHHHH----CCEEEEETCCSST---TSHHHHHHHHHHHTTCE-EEEECGGGTTSEE----------TTEECBSS-
T ss_pred HHHHHHHHcC----CCEEEEECCCCCC---CChHHHHHHHHHHCCCE-EEEeCCCcccCcC----------CCEEecCC-
Confidence 4567777743 3678887553321 11223455567778887 6666542 1111 12222211
Q ss_pred CHHHHhcccCccceeecCC--chhHHHHHhcCCcEEeccCCCchhHHHHHHhhhhceEEE
Q 048238 255 NQKEILWHESVQGFLSHCG--WNSALESICAGVPILAWPIMADQPLNARMVTEEIKVALR 312 (395)
Q Consensus 255 pq~~ll~~~~~~~~IthgG--~~s~~Ea~~~GvP~i~~P~~~DQ~~na~~v~~~lg~g~~ 312 (395)
-.++-...|+..+....- ...+-|+...|+..+++-....|..-++.+.+. |+-+.
T Consensus 64 -l~el~~~vDlavi~vp~~~~~~v~~~~~~~gi~~i~~~~g~~~~~~~~~a~~~-Gir~v 121 (140)
T 1iuk_A 64 -LLDLKEPVDILDVFRPPSALMDHLPEVLALRPGLVWLQSGIRHPEFEKALKEA-GIPVV 121 (140)
T ss_dssp -GGGCCSCCSEEEECSCHHHHTTTHHHHHHHCCSCEEECTTCCCHHHHHHHHHT-TCCEE
T ss_pred -HHHCCCCCCEEEEEeCHHHHHHHHHHHHHcCCCEEEEcCCcCHHHHHHHHHHc-CCEEE
Confidence 122222444422222221 123457778888876554444555555556555 66543
No 212
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}
Probab=21.31 E-value=2.2e+02 Score=27.29 Aligned_cols=30 Identities=13% Similarity=0.106 Sum_probs=21.6
Q ss_pred hcccCccceeecCCchhHHHHHh------------cCCcEEec
Q 048238 260 LWHESVQGFLSHCGWNSALESIC------------AGVPILAW 290 (395)
Q Consensus 260 l~~~~~~~~IthgG~~s~~Ea~~------------~GvP~i~~ 290 (395)
+..++ ..++--||.||+-|.+. +++|++.+
T Consensus 243 v~~SD-AfIaLPGG~GTLeELfEaLT~~QLg~~k~~~kPVVLl 284 (460)
T 3bq9_A 243 VRCAH-GIVIFPGGAGTAEELLYLLGILMHPDNQRQSLPVILT 284 (460)
T ss_dssp HHHCS-EEEECSCSHHHHHHHHHHHHHHTSGGGTTCCCCEEEE
T ss_pred HHhCC-EEEEcCCCcchHHHHHHHHHHHhhccccCCCCCEEEE
Confidence 33444 45777888999988732 58999988
No 213
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=21.25 E-value=2.8e+02 Score=26.14 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=40.2
Q ss_pred CCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCHHHHhcccCccceee
Q 048238 191 GSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQKEILWHESVQGFLS 270 (395)
Q Consensus 191 ~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~It 270 (395)
.+.+-+|.+|.++ ..++..+...|.+++.- ... ..... .+. .......++++.+|+ ++.
T Consensus 156 gktvGIIGlG~IG-------~~vA~~l~~~G~~V~~y-d~~-~~~~~--------~~~--~~~~sl~ell~~aDv--V~l 214 (416)
T 3k5p_A 156 GKTLGIVGYGNIG-------SQVGNLAESLGMTVRYY-DTS-DKLQY--------GNV--KPAASLDELLKTSDV--VSL 214 (416)
T ss_dssp TCEEEEECCSHHH-------HHHHHHHHHTTCEEEEE-CTT-CCCCB--------TTB--EECSSHHHHHHHCSE--EEE
T ss_pred CCEEEEEeeCHHH-------HHHHHHHHHCCCEEEEE-CCc-chhcc--------cCc--EecCCHHHHHhhCCE--EEE
Confidence 4678899999998 45666677778886543 321 01110 121 123457789999999 999
Q ss_pred cCCch
Q 048238 271 HCGWN 275 (395)
Q Consensus 271 hgG~~ 275 (395)
|+-.+
T Consensus 215 hvPlt 219 (416)
T 3k5p_A 215 HVPSS 219 (416)
T ss_dssp CCCC-
T ss_pred eCCCC
Confidence 88653
No 214
>3ip0_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; alpha beta, ATP-binding, folate biosynthesis, nucleotide-binding; HET: APC HHR HHS; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1hka_A 1eqm_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 1q0n_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A 1kbr_A 1hq2_A* ...
Probab=21.14 E-value=1.2e+02 Score=24.44 Aligned_cols=28 Identities=25% Similarity=0.359 Sum_probs=21.2
Q ss_pred eeEEEecccccCCHHHHHHHHHHHHhCC
Q 048238 194 VMYVAFGSQAEISAQQLKEIATGLEQSK 221 (395)
Q Consensus 194 vv~vs~Gs~~~~~~~~~~~l~~~l~~~~ 221 (395)
+.|+++||...-+...+...+..|.+..
T Consensus 2 iAyi~lGSNlGd~~~~l~~A~~~L~~~~ 29 (158)
T 3ip0_A 2 VAYIAIGSNLASPLEQVNAALKALGDIP 29 (158)
T ss_dssp EEEEEEEECSSCHHHHHHHHHHHHHTST
T ss_pred EEEEEEecchhhHHHHHHHHHHHHHcCC
Confidence 5799999997655677777777887643
No 215
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=20.83 E-value=59 Score=28.88 Aligned_cols=33 Identities=12% Similarity=0.035 Sum_probs=26.3
Q ss_pred HHhcccCccceeecCCchhHHHHHh----cCCcEEeccC
Q 048238 258 EILWHESVQGFLSHCGWNSALESIC----AGVPILAWPI 292 (395)
Q Consensus 258 ~ll~~~~~~~~IthgG~~s~~Ea~~----~GvP~i~~P~ 292 (395)
..-...++ +|+-||=||+.+++. .++|++.++.
T Consensus 59 ~~~~~~D~--vi~~GGDGT~l~a~~~~~~~~~P~lGI~~ 95 (292)
T 2an1_A 59 EIGQQADL--AVVVGGDGNMLGAARTLARYDINVIGINR 95 (292)
T ss_dssp HHHHHCSE--EEECSCHHHHHHHHHHHTTSSCEEEEBCS
T ss_pred hcccCCCE--EEEEcCcHHHHHHHHHhhcCCCCEEEEEC
Confidence 34445677 999999999999975 3789999974
No 216
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}
Probab=20.74 E-value=2.2e+02 Score=25.74 Aligned_cols=64 Identities=11% Similarity=0.157 Sum_probs=38.9
Q ss_pred CCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCHHHHhcccCccceee
Q 048238 191 GSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQKEILWHESVQGFLS 270 (395)
Q Consensus 191 ~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~It 270 (395)
++.+-+|.+|.++ ..+++.+...|.+++..-... ... ..+ .. ........++++.+|+ ++.
T Consensus 137 gktvGIiGlG~IG-------~~vA~~l~~~G~~V~~~dr~~-~~~-~~~------~~--~~~~~~l~ell~~aDv--V~l 197 (324)
T 3evt_A 137 GQQLLIYGTGQIG-------QSLAAKASALGMHVIGVNTTG-HPA-DHF------HE--TVAFTATADALATANF--IVN 197 (324)
T ss_dssp TCEEEEECCSHHH-------HHHHHHHHHTTCEEEEEESSC-CCC-TTC------SE--EEEGGGCHHHHHHCSE--EEE
T ss_pred CCeEEEECcCHHH-------HHHHHHHHhCCCEEEEECCCc-chh-HhH------hh--ccccCCHHHHHhhCCE--EEE
Confidence 4678899999998 456677777888865433221 111 100 01 1123345678888998 888
Q ss_pred cCC
Q 048238 271 HCG 273 (395)
Q Consensus 271 hgG 273 (395)
|+-
T Consensus 198 ~lP 200 (324)
T 3evt_A 198 ALP 200 (324)
T ss_dssp CCC
T ss_pred cCC
Confidence 874
No 217
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=20.56 E-value=85 Score=27.52 Aligned_cols=42 Identities=12% Similarity=0.057 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCCccEEEECCchh------hHHHHHHHcCCCcEEEecc
Q 048238 15 QPHFERALESLPHVSFMVSDGFLW------WTLDSANKFGFPRFVFYGM 57 (395)
Q Consensus 15 ~~~l~~~l~~~~kpD~vI~D~~~~------~~~~~A~~lgIP~i~~~~~ 57 (395)
..-+.+++++. +||+||+-.-.. .+..+|..||+|.+.....
T Consensus 105 A~~La~~i~~~-~~dlVl~G~~s~d~d~~~v~p~lA~~L~~~~vt~v~~ 152 (255)
T 1efv_B 105 ARVLAKLAEKE-KVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQ 152 (255)
T ss_dssp HHHHHHHHHHH-TCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHHhc-CCCEEEEeCcccCCchhhHHHHHHHHhCCCcccceEE
Confidence 34556666666 899999876442 7788999999999988653
No 218
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=20.30 E-value=4.3e+02 Score=23.70 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=58.0
Q ss_pred CeeEEEecccccCCHHHHHHHHHHHHhC-CCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCHHHHhcccCccceeec
Q 048238 193 SVMYVAFGSQAEISAQQLKEIATGLEQS-KVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQKEILWHESVQGFLSH 271 (395)
Q Consensus 193 ~vv~vs~Gs~~~~~~~~~~~l~~~l~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~Ith 271 (395)
++.+|..|.++ ...+.++... +..++.++... .+....+.++. ++. .+....+++..+++.+++.-
T Consensus 7 ~vgiiG~G~~g-------~~~~~~l~~~~~~~lvav~d~~-~~~~~~~~~~~---g~~--~~~~~~~~l~~~~~D~V~i~ 73 (354)
T 3db2_A 7 GVAAIGLGRWA-------YVMADAYTKSEKLKLVTCYSRT-EDKREKFGKRY---NCA--GDATMEALLAREDVEMVIIT 73 (354)
T ss_dssp EEEEECCSHHH-------HHHHHHHTTCSSEEEEEEECSS-HHHHHHHHHHH---TCC--CCSSHHHHHHCSSCCEEEEC
T ss_pred eEEEEccCHHH-------HHHHHHHHhCCCcEEEEEECCC-HHHHHHHHHHc---CCC--CcCCHHHHhcCCCCCEEEEe
Confidence 57788888775 2356666665 56766666542 11111222221 222 24566788865444334432
Q ss_pred CC----chhHHHHHhcCCcEEe-ccCCC--chhHHH-HHHhhhhceEEEeec
Q 048238 272 CG----WNSALESICAGVPILA-WPIMA--DQPLNA-RMVTEEIKVALRVET 315 (395)
Q Consensus 272 gG----~~s~~Ea~~~GvP~i~-~P~~~--DQ~~na-~~v~~~lg~g~~~~~ 315 (395)
-- ...+.+++.+|++++| -|+.. ++..-. +.+.+. |+-+.+..
T Consensus 74 tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~-~~~~~v~~ 124 (354)
T 3db2_A 74 VPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKET-GVKFLCGH 124 (354)
T ss_dssp SCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHH-CCCEEEEC
T ss_pred CChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHc-CCeEEEee
Confidence 22 3456778999999886 37643 333322 233333 66665553
No 219
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=20.11 E-value=1e+02 Score=25.13 Aligned_cols=42 Identities=14% Similarity=0.031 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHH----cCCCcEEEecchH
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANK----FGFPRFVFYGMNN 59 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~----lgIP~i~~~~~~~ 59 (395)
...+.+++. +||+||.|..++ -+..+++. ...|+++++....
T Consensus 49 ~al~~~~~~-~~dlvi~D~~~p~~~g~~~~~~l~~~~~~pii~lt~~~~ 96 (205)
T 1s8n_A 49 EAVELAELH-KPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTAFSQ 96 (205)
T ss_dssp HHHHHHHHH-CCSEEEEESSCSSSCHHHHHHHHHHTTCSCEEEEEEGGG
T ss_pred HHHHHHhhc-CCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEecCCC
Confidence 334455565 899999998765 44444433 3467777765543
No 220
>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}
Probab=20.09 E-value=2.6e+02 Score=25.78 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=42.1
Q ss_pred CCCeeEEEecccccCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccchhHHHHhcCCCeEEecCCCHHHHhcccCccceee
Q 048238 191 GSSVMYVAFGSQAEISAQQLKEIATGLEQSKVNFLWVIRKAESELGDGFEERVKGRGLVVRDWVNQKEILWHESVQGFLS 270 (395)
Q Consensus 191 ~~~vv~vs~Gs~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pq~~ll~~~~~~~~It 270 (395)
.+.+-+|.+|.++ ..+++.+...|.+++. +... ...... ...++. +....++++.+|+ ++.
T Consensus 176 gktvGIIGlG~IG-------~~vA~~l~~fG~~V~~-~d~~---~~~~~~---~~~g~~---~~~l~ell~~aDv--V~l 236 (365)
T 4hy3_A 176 GSEIGIVGFGDLG-------KALRRVLSGFRARIRV-FDPW---LPRSML---EENGVE---PASLEDVLTKSDF--IFV 236 (365)
T ss_dssp SSEEEEECCSHHH-------HHHHHHHTTSCCEEEE-ECSS---SCHHHH---HHTTCE---ECCHHHHHHSCSE--EEE
T ss_pred CCEEEEecCCccc-------HHHHHhhhhCCCEEEE-ECCC---CCHHHH---hhcCee---eCCHHHHHhcCCE--EEE
Confidence 4678899999998 5667777778888654 3331 111111 112332 3567889999999 888
Q ss_pred cCCch
Q 048238 271 HCGWN 275 (395)
Q Consensus 271 hgG~~ 275 (395)
|+-.+
T Consensus 237 ~~Plt 241 (365)
T 4hy3_A 237 VAAVT 241 (365)
T ss_dssp CSCSS
T ss_pred cCcCC
Confidence 87543
No 221
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=20.08 E-value=93 Score=22.86 Aligned_cols=40 Identities=10% Similarity=0.019 Sum_probs=23.7
Q ss_pred HHHHHHhcCCCccEEEECCchh--hHHHHHHHc------CCCcEEEecc
Q 048238 17 HFERALESLPHVSFMVSDGFLW--WTLDSANKF------GFPRFVFYGM 57 (395)
Q Consensus 17 ~l~~~l~~~~kpD~vI~D~~~~--~~~~~A~~l------gIP~i~~~~~ 57 (395)
...+.+++. +||+||.|..++ -+..+.+.+ .+|.++++..
T Consensus 39 ~a~~~~~~~-~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ii~ls~~ 86 (130)
T 1dz3_A 39 DCLQMLEEK-RPDILLLDIIMPHLDGLAVLERIRAGFEHQPNVIMLTAF 86 (130)
T ss_dssp HHHHHHHHH-CCSEEEEESCCSSSCHHHHHHHHHHHCSSCCEEEEEEET
T ss_pred HHHHHHhcC-CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCcEEEEecC
Confidence 344455565 899999998765 344444322 3556655544
No 222
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=20.07 E-value=46 Score=31.02 Aligned_cols=30 Identities=17% Similarity=0.177 Sum_probs=24.4
Q ss_pred HhcccCccceeecCCchhHHHHHh----cCCcEEec
Q 048238 259 ILWHESVQGFLSHCGWNSALESIC----AGVPILAW 290 (395)
Q Consensus 259 ll~~~~~~~~IthgG~~s~~Ea~~----~GvP~i~~ 290 (395)
+-..+|+ +|+=||=||++.+.. .++|++.+
T Consensus 105 ~~~~~Dl--vI~lGGDGT~L~aa~~~~~~~~PvlGi 138 (365)
T 3pfn_A 105 ISNQIDF--IICLGGDGTLLYASSLFQGSVPPVMAF 138 (365)
T ss_dssp CTTTCSE--EEEESSTTHHHHHHHHCSSSCCCEEEE
T ss_pred cccCCCE--EEEEcChHHHHHHHHHhccCCCCEEEE
Confidence 3456777 999999999999976 35888877
No 223
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=20.00 E-value=1.6e+02 Score=21.46 Aligned_cols=39 Identities=18% Similarity=0.042 Sum_probs=22.9
Q ss_pred HHHHhcCCCccEEEECCchh---hHHHHHHHc-----CCCcEEEecc
Q 048238 19 ERALESLPHVSFMVSDGFLW---WTLDSANKF-----GFPRFVFYGM 57 (395)
Q Consensus 19 ~~~l~~~~kpD~vI~D~~~~---~~~~~A~~l-----gIP~i~~~~~ 57 (395)
.+.+++..+||+||.|..+. .+..+++.+ .+|+++++..
T Consensus 42 ~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~ 88 (132)
T 2rdm_A 42 IEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGH 88 (132)
T ss_dssp HHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESS
T ss_pred HHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCC
Confidence 33444322699999997553 244444332 5788877654
Done!