BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048240
(664 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IVN|A Chain A, E.Coli Thioesterase IPROTEASE ILYSOPHOSPHOLIASE L1
pdb|1U8U|A Chain A, E. Coli Thioesterase IPROTEASE ILYSOPHOSPHOLIASE L1 IN
COMPLEXED With Octanoic Acid
Length = 190
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 9/115 (7%)
Query: 30 TILILFAPFRKSTANRLMIMLIWSAYLLADWAANFAV---GLIGDTHRDNQASKPEKSDL 86
T+LIL S R+ W A L W + +V + GDT + A P L
Sbjct: 3 TLLILGDSL--SAGYRMSASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPA---L 57
Query: 87 LAFWAP-FLLLHLGGPDTITAFALEDNELWIRHFFGFVFQAIAAVYIFLLSLPGN 140
L P ++L+ LGG D + F + E +R V A A + + LP N
Sbjct: 58 LKQHQPRWVLVELGGNDGLRGFQPQQTEQTLRQILQDVKAANAEPLLMQIRLPAN 112
>pdb|1J00|A Chain A, E. Coli Thioesterase I/protease I/lysophospholipase L1 In
Complexed With Diethyl Phosphono Moiety
Length = 190
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 7/104 (6%)
Query: 41 STANRLMIMLIWSAYLLADWAANFAV---GLIGDTHRDNQASKPEKSDLLAFWAP-FLLL 96
S R+ W A L W + +V + GDT + A P LL P ++L+
Sbjct: 12 SAGYRMSASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPA---LLKQHQPRWVLV 68
Query: 97 HLGGPDTITAFALEDNELWIRHFFGFVFQAIAAVYIFLLSLPGN 140
LGG D + F + E +R V A A + + LP N
Sbjct: 69 ELGGNDGLRGFQPQQTEQTLRQILQDVKAANAEPLLMQIRLPAN 112
>pdb|1LA2|A Chain A, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|B Chain B, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|C Chain C, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|D Chain D, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
Length = 533
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 11/61 (18%)
Query: 439 TRGDWIFEADSENVCNENFKSVRNDLKPYIAENAFDKSLLLWHIATELLYNTDEAVDNDK 498
TRG W + + +R D++ + ENA DK ++LW TE V++
Sbjct: 213 TRGKWT-----------HLQRIRRDIQNFKEENALDKVIVLWTANTERYVEVSPGVNDTX 261
Query: 499 E 499
E
Sbjct: 262 E 262
>pdb|1JKF|A Chain A, Holo 1l-Myo-Inositol-1-Phosphate Synthase
pdb|1JKF|B Chain B, Holo 1l-Myo-Inositol-1-Phosphate Synthase
pdb|1JKI|A Chain A, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2- Deoxy-Glucitol-6-Phosphate
pdb|1JKI|B Chain B, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2- Deoxy-Glucitol-6-Phosphate
pdb|1P1F|A Chain A, Crystal Structure Of Apo 1l-Myo-Inositol 1-Phosphate
Synthase
pdb|1P1F|B Chain B, Crystal Structure Of Apo 1l-Myo-Inositol 1-Phosphate
Synthase
pdb|1P1H|A Chain A, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|B Chain B, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|C Chain C, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|D Chain D, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1I|A Chain A, Crystal Structure Of The Nad+-Bound 1l-Myo-Inositol
1-Phosphate Synthase
pdb|1P1I|B Chain B, Crystal Structure Of The Nad+-Bound 1l-Myo-Inositol
1-Phosphate Synthase
pdb|1P1J|A Chain A, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh
pdb|1P1J|B Chain B, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh
pdb|1P1K|A Chain A, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh In The Presence Of Edta
pdb|1P1K|B Chain B, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh In The Presence Of Edta
pdb|1RM0|A Chain A, Crystal Structure Of Myo-Inositol 1-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With Nad+ And
2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate
pdb|1RM0|B Chain B, Crystal Structure Of Myo-Inositol 1-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With Nad+ And
2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate
Length = 533
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 11/61 (18%)
Query: 439 TRGDWIFEADSENVCNENFKSVRNDLKPYIAENAFDKSLLLWHIATELLYNTDEAVDNDK 498
TRG W + + +R D++ + ENA DK ++LW TE V++
Sbjct: 213 TRGKWT-----------HLQRIRRDIQNFKEENALDKVIVLWTANTERYVEVSPGVNDTM 261
Query: 499 E 499
E
Sbjct: 262 E 262
>pdb|2WYX|A Chain A, Neutron Structure Of A Class A Beta-Lactamase Toho-1
E166a R274n R276n Triple Mutant
Length = 256
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 94 LLLHLGGPDTITAFA 108
L+ HLGGPD +TAFA
Sbjct: 109 LIAHLGGPDKVTAFA 123
>pdb|4BD0|A Chain A, X-ray Structure Of A Perdeuterated Toho-1 R274n R276n
Double Mutant Beta-lactamase In Complex With A Fully
Deuterated Boronic Acid (bzb)
Length = 261
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 94 LLLHLGGPDTITAFA 108
L+ HLGGPD +TAFA
Sbjct: 111 LIAHLGGPDKVTAFA 125
>pdb|2ZQ8|A Chain A, Apo Structure Of Class A Beta-Lactamase Toho-1 R274nR276N
Double Mutant
Length = 262
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 94 LLLHLGGPDTITAFA 108
L+ HLGGPD +TAFA
Sbjct: 112 LIAHLGGPDKVTAFA 126
>pdb|4BD1|A Chain A, Neutron Structure Of A Perdeuterated Toho-1 R274n R276n
Double Mutant Beta-lactamase In Complex With A Fully
Deuterated Boronic Acid (bzb)
Length = 261
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 94 LLLHLGGPDTITAFA 108
L+ HLGGPD +TAFA
Sbjct: 111 LIAHLGGPDKVTAFA 125
>pdb|1WE4|A Chain A, Crystal Structure Of Class A Beta-Lactamase Toho-1 G238c
Mutant
Length = 262
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 94 LLLHLGGPDTITAFA 108
L+ HLGGPD +TAFA
Sbjct: 112 LIAHLGGPDKVTAFA 126
>pdb|1IYS|A Chain A, Crystal Structure Of Class A Beta-Lactamase Toho-1
Length = 262
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 94 LLLHLGGPDTITAFA 108
L+ HLGGPD +TAFA
Sbjct: 112 LIAHLGGPDKVTAFA 126
>pdb|2XR0|A Chain A, Room Temperature X-Ray Structure Of The Perdeuterated
Toho-1 R274n R276n Double Mutant Beta-Lactamase
Length = 260
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 94 LLLHLGGPDTITAFA 108
L+ HLGGPD +TAFA
Sbjct: 110 LIAHLGGPDKVTAFA 124
>pdb|2XQZ|A Chain A, Neutron Structure Of The Perdeuterated Toho-1 R274n R276n
Double Mutant Beta-Lactamase
Length = 260
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 94 LLLHLGGPDTITAFA 108
L+ HLGGPD +TAFA
Sbjct: 110 LIAHLGGPDKVTAFA 124
>pdb|1IYO|A Chain A, Toho-1 Beta-Lactamase In Complex With Cefotaxime
pdb|1IYP|A Chain A, Toho-1 Beta-Lactamase In Complex With Cephalothin
pdb|1IYQ|A Chain A, Toho-1 Beta-Lactamase In Complex With Benzylpenicillin
pdb|1BZA|A Chain A, Beta-Lactamase Toho-1 From Escherichia Coli Tuh12191
Length = 262
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 94 LLLHLGGPDTITAFA 108
L+ HLGGPD +TAFA
Sbjct: 112 LIAHLGGPDKVTAFA 126
>pdb|2ZQ7|A Chain A, Apo Structure Of Class A Beta-Lactamase Toho-1
E166aR274NR276N TRIPLE MUTANT
pdb|2ZQ9|A Chain A, Cephalothin Acyl-Intermediate Structure Of Class A Beta-
Lactamase Toho-1 E166aR274NR276N TRIPLE MUTANT
pdb|2ZQA|A Chain A, Cefotaxime Acyl-Intermediate Structure Of Class A
Beta-Lacta Toho-1 E166aR274NR276N TRIPLE MUTANT
pdb|2ZQC|A Chain A, Aztreonam Acyl-Intermediate Structure Of Class A
Beta-Lactam Toho-1 E166aR274NR276N TRIPLE MUTANT
pdb|2ZQD|A Chain A, Ceftazidime Acyl-Intermediate Structure Of Class A
Beta-Lact Toho-1 E166aR274NR276N TRIPLE MUTANT
Length = 262
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 94 LLLHLGGPDTITAFA 108
L+ HLGGPD +TAFA
Sbjct: 112 LIAHLGGPDKVTAFA 126
>pdb|1OHC|A Chain A, Structure Of The Proline Directed Phosphatase Cdc14
pdb|1OHD|A Chain A, Structure Of Cdc14 In Complex With Tungstate
Length = 348
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 266 FYGRKPEEAYRIIEVELNLFYETFYT--KVEVIRSAAGYIMRFLSFGSVVVALSFFHLNV 323
+ GR PEEAYRI+ +F ET Y + S YI F +V A+ + LN
Sbjct: 105 YLGRTPEEAYRIL-----IFGETSYIPFRDAAYGSCNFYITLLDCFHAVKKAMQYGFLNF 159
Query: 324 EKHGFDNFD 332
D ++
Sbjct: 160 NSFNLDEYE 168
>pdb|1OHE|A Chain A, Structure Of Cdc14b Phosphatase With A Peptide Ligand
Length = 348
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 266 FYGRKPEEAYRIIEVELNLFYETFYT--KVEVIRSAAGYIMRFLSFGSVVVALSFFHLNV 323
+ GR PEEAYRI+ +F ET Y + S YI F +V A+ + LN
Sbjct: 105 YLGRTPEEAYRIL-----IFGETSYIPFRDAAYGSCNFYITLLDCFHAVKKAMQYGFLNF 159
Query: 324 EKHGFDNFD 332
D ++
Sbjct: 160 NSFNLDEYE 168
>pdb|2VD3|A Chain A, The Structure Of Histidine Inhibited Hisg From
Methanobacterium Thermoautotrophicum
pdb|2VD3|B Chain B, The Structure Of Histidine Inhibited Hisg From
Methanobacterium Thermoautotrophicum
Length = 289
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Query: 268 GRKPEEAYRIIE---------VELNLFYETFYTKVEVIRSAAGYIMRFLSFGSVVVALSF 318
GR E A R++E V LF +T + ++EV+ S A I F++ G+ + ++
Sbjct: 13 GRISEPAIRLLENAGVGLKDTVNRKLFSKTQHPQIEVMFSRAADIPEFVADGAADLGITG 72
Query: 319 FHLNVEKHGFDNFDVRVTYILIFGAICL 346
+ L VE+ DV + L +G L
Sbjct: 73 YDLIVER----GSDVEILEDLKYGRASL 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,347,102
Number of Sequences: 62578
Number of extensions: 779273
Number of successful extensions: 2203
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2191
Number of HSP's gapped (non-prelim): 22
length of query: 664
length of database: 14,973,337
effective HSP length: 105
effective length of query: 559
effective length of database: 8,402,647
effective search space: 4697079673
effective search space used: 4697079673
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)