BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048240
         (664 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9P2D7|DYH1_HUMAN Dynein heavy chain 1, axonemal OS=Homo sapiens GN=DNAH1 PE=2 SV=4
          Length = 4330

 Score = 37.4 bits (85), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 305  RFLSFGSVVVALSFFHLN-VEKHGFDNFDVRVTYILIFG--AICLDTIALFMLVFSDRTF 361
            + + F S++++L  FH N +E+H F      + Y    G   IC+  + +F+  + D  +
Sbjct: 3875 KVMEFKSLLLSLCLFHGNALERHKFGPLGFNIPYEFTDGDLRICISQLKMFLDEYDDIPY 3934

Query: 362  AALKKTEHESKSSGR 376
              LK T  E    GR
Sbjct: 3935 KVLKYTAGEINYGGR 3949


>sp|Q9LQL2|PTR14_ARATH Nitrate transporter 1.5 OS=Arabidopsis thaliana GN=NRT1.5 PE=1 SV=2
          Length = 614

 Score = 34.7 bits (78), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 47  MIMLIWSAYLLADWAANFA--VGLIGDTHRDNQASKPEKSDLLAFWAPFLLLHLGG--PD 102
           + M  +S YL+A     +   +  +G    D +  K   S +  F   +L L+LG    +
Sbjct: 155 ITMFYFSIYLIALGYGGYQPNIATLGADQFDEEHPKEGYSKIAFFSYFYLALNLGSLFSN 214

Query: 103 TITAFALEDNELWIRHFFGFVFQAIAAVYIFLLSLPGNKLFIPT 146
           TI  +  ED  +W   F+     AI  + +FL+  P  + F PT
Sbjct: 215 TILGY-FEDEGMWALGFWASTGSAIIGLILFLVGTPRYRYFKPT 257


>sp|P47308|PTF3A_MYCGE PTS system fructose-specific EIIABC component OS=Mycoplasma
           genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
           GN=fruA PE=4 SV=1
          Length = 680

 Score = 34.7 bits (78), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 251 DIIFSFRERDESRHFFYGRKPEEAYRIIEVELNLFYETFYTKV-EVIRSAAGYIMRFLSF 309
           D ++   +  + +      KP    ++ E E    +  F+ ++   I S   Y++ F+ F
Sbjct: 256 DEVYELIKNQKGKQLANSAKPTNQTQLAESEGEFNFNNFHKRIYRAILSGVSYMLPFVVF 315

Query: 310 GSVVVALSFF 319
           G +++ALSF 
Sbjct: 316 GGILIALSFL 325


>sp|P0ADA1|TESA_ECOLI Acyl-CoA thioesterase I OS=Escherichia coli (strain K12) GN=tesA
           PE=1 SV=1
          Length = 208

 Score = 32.7 bits (73), Expect = 9.0,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 20/135 (14%)

Query: 23  LFSLFLQTILILFAPFRKSTANRLMIM-------------LIWSAYLLADWAANFAV--- 66
           +F   L  + ++   FR + A+ L+I+               W A L   W +  +V   
Sbjct: 7   VFRWHLPFLFLVLLTFRAAAADTLLILGDSLSAGYRMSASAAWPALLNDKWQSKTSVVNA 66

Query: 67  GLIGDTHRDNQASKPEKSDLLAFWAP-FLLLHLGGPDTITAFALEDNELWIRHFFGFVFQ 125
            + GDT +   A  P    LL    P ++L+ LGG D +  F  +  E  +R     V  
Sbjct: 67  SISGDTSQQGLARLPA---LLKQHQPRWVLVELGGNDGLRGFQPQQTEQTLRQILQDVKA 123

Query: 126 AIAAVYIFLLSLPGN 140
           A A   +  + LP N
Sbjct: 124 ANAEPLLMQIRLPAN 138


>sp|P0ADA2|TESA_ECOL6 Acyl-CoA thioesterase I OS=Escherichia coli O6:H1 (strain CFT073 /
           ATCC 700928 / UPEC) GN=tesA PE=3 SV=1
          Length = 208

 Score = 32.7 bits (73), Expect = 9.0,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 20/135 (14%)

Query: 23  LFSLFLQTILILFAPFRKSTANRLMIM-------------LIWSAYLLADWAANFAV--- 66
           +F   L  + ++   FR + A+ L+I+               W A L   W +  +V   
Sbjct: 7   VFRWHLPFLFLVLLTFRAAAADTLLILGDSLSAGYRMSASAAWPALLNDKWQSKTSVVNA 66

Query: 67  GLIGDTHRDNQASKPEKSDLLAFWAP-FLLLHLGGPDTITAFALEDNELWIRHFFGFVFQ 125
            + GDT +   A  P    LL    P ++L+ LGG D +  F  +  E  +R     V  
Sbjct: 67  SISGDTSQQGLARLPA---LLKQHQPRWVLVELGGNDGLRGFQPQQTEQTLRQILQDVKA 123

Query: 126 AIAAVYIFLLSLPGN 140
           A A   +  + LP N
Sbjct: 124 ANAEPLLMQIRLPAN 138


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.139    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 242,472,763
Number of Sequences: 539616
Number of extensions: 9938952
Number of successful extensions: 27223
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 27222
Number of HSP's gapped (non-prelim): 10
length of query: 664
length of database: 191,569,459
effective HSP length: 124
effective length of query: 540
effective length of database: 124,657,075
effective search space: 67314820500
effective search space used: 67314820500
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 65 (29.6 bits)