Query 048240
Match_columns 664
No_of_seqs 157 out of 579
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 13:11:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048240.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048240hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_v 60S acidic ribosomal pr 26.8 22 0.00075 30.7 1.3 19 91-109 5-23 (113)
2 2lbf_B 60S acidic ribosomal pr 22.4 33 0.0011 27.0 1.4 18 91-108 6-23 (70)
3 3izc_v 60S acidic ribosomal pr 19.7 35 0.0012 29.0 1.2 18 91-109 5-22 (106)
4 3bp3_A Glucose-specific phosph 8.3 1.2E+02 0.004 24.4 1.1 17 91-107 7-23 (82)
5 1qey_A MNT-C, protein (regulat 7.8 2E+02 0.0067 18.6 1.7 16 408-423 11-26 (31)
6 1iba_A Glucose permease; phosp 6.9 1.7E+02 0.0057 24.6 1.4 17 91-107 16-32 (101)
7 2lx0_A Membrane fusion protein 6.9 2.6E+02 0.0089 17.5 1.9 9 597-605 4-12 (32)
8 2p06_A Hypothetical protein AF 6.2 2.6E+02 0.0089 22.3 2.1 18 497-514 84-101 (114)
9 3dt5_A Uncharacterized protein 5.2 2.2E+02 0.0074 23.4 1.1 22 98-119 77-98 (135)
10 3dwa_A SUBB, subtilase cytotox 4.7 1.4E+02 0.0048 25.8 -0.4 26 99-126 39-64 (126)
No 1
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=26.75 E-value=22 Score=30.72 Aligned_cols=19 Identities=37% Similarity=0.436 Sum_probs=16.4
Q ss_pred HHHHHHhhcCCCccccccc
Q 048240 91 APFLLLHLGGPDTITAFAL 109 (664)
Q Consensus 91 ApfLLlHLGG~DtITAysl 109 (664)
|..||+||||..+||+-.|
T Consensus 5 aAylL~~l~G~~~ptad~I 23 (113)
T 3iz5_v 5 AAYLLAYLSGNASPSAEDL 23 (113)
T ss_dssp HHHHHHHHHTCCCCTTTTH
T ss_pred HHHHHHHHcCCCCCCHHHH
Confidence 5679999999999998654
No 2
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=22.39 E-value=33 Score=26.95 Aligned_cols=18 Identities=39% Similarity=0.554 Sum_probs=14.8
Q ss_pred HHHHHHhhcCCCcccccc
Q 048240 91 APFLLLHLGGPDTITAFA 108 (664)
Q Consensus 91 ApfLLlHLGG~DtITAys 108 (664)
+..||+|+||..+||+=.
T Consensus 6 yA~Lll~~~g~~~~ta~~ 23 (70)
T 2lbf_B 6 ASYLLAALGGNSSPSAKD 23 (70)
T ss_dssp HHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHhCCCCCCCHHH
Confidence 457999999999998754
No 3
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=19.73 E-value=35 Score=29.04 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=15.2
Q ss_pred HHHHHHhhcCCCccccccc
Q 048240 91 APFLLLHLGGPDTITAFAL 109 (664)
Q Consensus 91 ApfLLlHLGG~DtITAysl 109 (664)
|..||+|+||.+ ||+=.|
T Consensus 5 aAyLL~~~gG~e-~tad~I 22 (106)
T 3izc_v 5 AAYLLLNAAGNT-PDATKI 22 (106)
T ss_dssp HHHHHHHHHTCC-CTTTTH
T ss_pred HHHHHHHhcCCC-CCHHHH
Confidence 567999999999 998654
No 4
>3bp3_A Glucose-specific phosphotransferase enzyme IIB component; transcription regulation, inner membrane, kinase, membrane, phosphoprotein; 1.65A {Escherichia coli} PDB: 1o2f_B 3bp8_C
Probab=8.31 E-value=1.2e+02 Score=24.37 Aligned_cols=17 Identities=41% Similarity=0.735 Sum_probs=14.0
Q ss_pred HHHHHHhhcCCCccccc
Q 048240 91 APFLLLHLGGPDTITAF 107 (664)
Q Consensus 91 ApfLLlHLGG~DtITAy 107 (664)
|.-++-.|||.|||...
T Consensus 7 a~~ii~~lGG~~NI~~v 23 (82)
T 3bp3_A 7 APALVAAFGGKENITNL 23 (82)
T ss_dssp HHHHHHHTTCGGGEEEE
T ss_pred HHHHHHHhCCHHHHhhh
Confidence 55688899999999874
No 5
>1qey_A MNT-C, protein (regulatory protein MNT); oligomerization, transcriptional control, P22 MNT repressor, gene regulation; NMR {Enterobacteria phage P22} SCOP: h.2.1.1
Probab=7.77 E-value=2e+02 Score=18.61 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=13.3
Q ss_pred ccHhHHHHHHHHHHhc
Q 048240 408 LSLGLWSFIFDELKKK 423 (664)
Q Consensus 408 v~~~~k~~i~~~l~~~ 423 (664)
+++.+|+.+|+.|++.
T Consensus 11 qse~vKk~vfdtLk~~ 26 (31)
T 1qey_A 11 QSELVKKMVFDTLKDL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5778999999999863
No 6
>1iba_A Glucose permease; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane, inner membrane, phoshphotransferase; NMR {Escherichia coli} SCOP: d.95.1.1
Probab=6.93 E-value=1.7e+02 Score=24.59 Aligned_cols=17 Identities=41% Similarity=0.735 Sum_probs=14.9
Q ss_pred HHHHHHhhcCCCccccc
Q 048240 91 APFLLLHLGGPDTITAF 107 (664)
Q Consensus 91 ApfLLlHLGG~DtITAy 107 (664)
|.-++-.|||.|||+..
T Consensus 16 A~~Ii~alGG~eNI~~v 32 (101)
T 1iba_A 16 APALVAAFGGKENITNL 32 (101)
T ss_dssp HHHHTHHHHTCTTCSBC
T ss_pred HHHHHHHhCCHHHHhhh
Confidence 66789999999999984
No 7
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=6.89 E-value=2.6e+02 Score=17.53 Aligned_cols=9 Identities=22% Similarity=0.866 Sum_probs=6.5
Q ss_pred hHHHHHHHH
Q 048240 597 SKWKLISKM 605 (664)
Q Consensus 597 ~~W~~ia~v 605 (664)
.-||+|++.
T Consensus 4 tiweviagl 12 (32)
T 2lx0_A 4 TIWEVIAGL 12 (32)
T ss_dssp SSHHHHHHH
T ss_pred hHHHHHHHH
Confidence 358888875
No 8
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=6.15 E-value=2.6e+02 Score=22.32 Aligned_cols=18 Identities=11% Similarity=0.150 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 048240 497 DKEFSRLLSDYMLYLLIT 514 (664)
Q Consensus 497 ~~~~~~~LSnYmmYLl~~ 514 (664)
.+..--...|+||||--.
T Consensus 84 lrdelldvanfcmylwgk 101 (114)
T 2p06_A 84 LRDELLDVANFCMYLWGK 101 (114)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344455678999999643
No 9
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=5.22 E-value=2.2e+02 Score=23.40 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.0
Q ss_pred hcCCCccccccccchHHHHHHH
Q 048240 98 LGGPDTITAFALEDNELWIRHF 119 (664)
Q Consensus 98 LGG~DtITAysleDn~LW~Rhl 119 (664)
..|.-+-|-|+-||.++|+..+
T Consensus 77 iagsanwtfyakedfeqwkeal 98 (135)
T 3dt5_A 77 IAGSANWTFYAKEDFEQWKEAL 98 (135)
T ss_dssp CTTCSSEEESSHHHHHHHHHHH
T ss_pred hccccceeEEeHhhHHHHHHHH
Confidence 4678888999999999999865
No 10
>3dwa_A SUBB, subtilase cytotoxin, subunit B; HET: 1PE; 2.08A {Escherichia coli} PDB: 3dwp_A* 3dwq_A*
Probab=4.66 E-value=1.4e+02 Score=25.83 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=0.0
Q ss_pred cCCCccccccccchHHHHHHHHHHHHHH
Q 048240 99 GGPDTITAFALEDNELWIRHFFGFVFQA 126 (664)
Q Consensus 99 GG~DtITAysleDn~LW~Rhll~l~~Qv 126 (664)
|| +++|.++.|+.-|++++-+++-|+
T Consensus 39 G~--~v~aCaV~~~s~~~~~Fd~~~~~A 64 (126)
T 3dwa_A 39 GS--SISACSMKNSSVWGASFSTLYNQA 64 (126)
T ss_dssp CC--EEEEEEETTCSSSGGGHHHHHHHH
T ss_pred CC--ceeEEEEeccccccccHHHHHHHh
Done!