Query 048240
Match_columns 664
No_of_seqs 157 out of 579
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 13:11:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048240.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048240hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1st6a3 a.24.9.1 (A:253-371) V 23.3 45 0.0033 26.9 4.8 73 513-592 32-106 (119)
2 d3bp8c1 d.95.1.1 (C:13-87) Glu 21.8 18 0.0013 26.9 1.7 17 91-107 2-18 (75)
3 d1jb0m_ f.23.19.1 (M:) Subunit 10.6 50 0.0036 19.5 1.3 15 473-487 16-30 (31)
4 d2p06a1 a.204.1.3 (A:1-84) Hyp 9.7 51 0.0037 23.3 1.3 16 498-513 64-79 (84)
5 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 6.6 1.6E+02 0.011 20.3 2.8 20 586-605 12-33 (59)
6 d1st6a5 a.24.9.1 (A:489-646) V 5.9 1.8E+02 0.013 24.2 3.4 29 514-544 17-45 (158)
7 d1c99a_ f.17.1.1 (A:) F1F0 ATP 4.0 3.6E+02 0.026 19.5 3.5 33 36-68 38-70 (79)
8 d2axtt1 f.23.34.1 (T:1-30) Pho 3.8 2.5E+02 0.019 16.0 1.8 10 334-343 3-12 (30)
9 d1q90l_ f.23.24.1 (L:) PetL su 3.8 3.4E+02 0.025 15.6 2.5 14 334-347 4-18 (32)
10 d1st6a4 a.24.9.1 (A:372-488) V 3.5 4.3E+02 0.031 20.6 3.8 70 514-592 25-97 (117)
No 1
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=23.31 E-value=45 Score=26.89 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=43.3
Q ss_pred hhCCCCcccccccchhHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHhcccCCCCc--ccccCCCCchhhHHHHHHHHHH
Q 048240 513 ITQSGLMSAVAGIGKIRFRDTCAEAKRFFKSKNVTSDKNIKDACDEILSVNTFAEP--AEVKGDRSKSLLFEATMLAKQL 590 (664)
Q Consensus 513 ~~~P~MLP~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~g~~~~~vl~~g~~La~~L 590 (664)
...|...|+ |.++.-.+..+++++++=..+...........|+.|-.+-..... ...+|+ -.+|..||+++
T Consensus 32 L~dP~~~~g--g~Ge~AiR~il~earkva~~~~~~~r~~Il~~c~ei~~lt~qLadLr~~G~G~-----sPeA~~lA~qi 104 (119)
T d1st6a3 32 LRDPNAPPG--DAGEQAIRQILDEAGKAGELCAGKERREILGTCKTLGQMTDQLADLRARGQGA-----TPMAMQKAQQV 104 (119)
T ss_dssp HHSTTSCST--TTTHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHHHTTTTCCC-----CHHHHHHHHHH
T ss_pred HHCcCCCCC--CccHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHH
Confidence 358999988 888998999999999887766433322233455554322111000 112333 23677788777
Q ss_pred hc
Q 048240 591 KK 592 (664)
Q Consensus 591 ~~ 592 (664)
-+
T Consensus 105 ~~ 106 (119)
T d1st6a3 105 SQ 106 (119)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 2
>d3bp8c1 d.95.1.1 (C:13-87) Glucose permease domain IIB {Escherichia coli [TaxId: 562]}
Probab=21.83 E-value=18 Score=26.92 Aligned_cols=17 Identities=41% Similarity=0.735 Sum_probs=14.1
Q ss_pred HHHHHHhhcCCCccccc
Q 048240 91 APFLLLHLGGPDTITAF 107 (664)
Q Consensus 91 ApfLLlHLGG~DtITAy 107 (664)
|+-++-+|||.|||+..
T Consensus 2 A~~ii~~lGG~~NI~~~ 18 (75)
T d3bp8c1 2 APALVAAFGGKENITNL 18 (75)
T ss_dssp HHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHhCCHHHHHHH
Confidence 56678899999999875
No 3
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=10.62 E-value=50 Score=19.50 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=11.3
Q ss_pred chhhhHHHHHhhhhc
Q 048240 473 FDKSLLLWHIATELL 487 (664)
Q Consensus 473 f~~sILiWHIATdic 487 (664)
.-..||.|.+||+++
T Consensus 16 l~pg~lafrlately 30 (31)
T d1jb0m_ 16 LLPAVLAFRLSTELY 30 (31)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 346788888888875
No 4
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=9.70 E-value=51 Score=23.27 Aligned_cols=16 Identities=13% Similarity=0.249 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 048240 498 KEFSRLLSDYMLYLLI 513 (664)
Q Consensus 498 ~~~~~~LSnYmmYLl~ 513 (664)
+..--...|+||||--
T Consensus 64 rdelldvanfcmylwg 79 (84)
T d2p06a1 64 RDELLDVANFCMYLWG 79 (84)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444557899999853
No 5
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.62 E-value=1.6e+02 Score=20.35 Aligned_cols=20 Identities=20% Similarity=0.527 Sum_probs=12.8
Q ss_pred HHHHHhcCCh--hhHHHHHHHH
Q 048240 586 LAKQLKKLDQ--KSKWKLISKM 605 (664)
Q Consensus 586 La~~L~~~~~--~~~W~~ia~v 605 (664)
|.+.|...+. .+||+.|++.
T Consensus 12 le~Al~~~P~gt~~RW~~IA~~ 33 (59)
T d2cqqa1 12 LTRSMVKFPGGTPGRWEKIAHE 33 (59)
T ss_dssp HHHHHHHSCTTCTTHHHHHHHH
T ss_pred HHHHHHHCCCCCcHHHHHHHHH
Confidence 3444555443 3799999986
No 6
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=5.93 E-value=1.8e+02 Score=24.24 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=23.5
Q ss_pred hCCCCcccccccchhHHHHHHHHHHHHHhhc
Q 048240 514 TQSGLMSAVAGIGKIRFRDTCAEAKRFFKSK 544 (664)
Q Consensus 514 ~~P~MLP~~~~~~~~~~~~t~~~~~~~~~~~ 544 (664)
.+|...|+ |.++.-.+...++++++=..+
T Consensus 17 ~~P~~~~~--glGe~Air~iv~earrvA~~~ 45 (158)
T d1st6a5 17 DNPTVDDR--GVGQAAIRGLVAEGRRLANVM 45 (158)
T ss_dssp HSCCCCCC--SCSHHHHHHHHHHHHHHHHTS
T ss_pred HCcCCCCC--cccHHHHHHHHHHHHHHHHhc
Confidence 58999988 788888888999988875544
No 7
>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]}
Probab=3.98 E-value=3.6e+02 Score=19.54 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=28.2
Q ss_pred cCcccCchhhHHHHHHHHHHhhhhhHHHHHhhh
Q 048240 36 APFRKSTANRLMIMLIWSAYLLADWAANFAVGL 68 (664)
Q Consensus 36 ~~~Rrr~~~~~lr~~lWlAYl~ad~va~yaLG~ 68 (664)
+.-|+-...+.++.-..+.-.+.|++++|++..
T Consensus 38 ~~ARqPE~~~~l~~~m~ig~al~Ea~~i~~lvi 70 (79)
T d1c99a_ 38 GAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGL 70 (79)
T ss_dssp HHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCchHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888889999999999999999999853
No 8
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.83 E-value=2.5e+02 Score=15.96 Aligned_cols=10 Identities=40% Similarity=1.009 Sum_probs=6.8
Q ss_pred hHHHHHHHHH
Q 048240 334 RVTYILIFGA 343 (664)
Q Consensus 334 ~ITyvLl~ga 343 (664)
.|||+++..-
T Consensus 3 ~i~yv~ifac 12 (30)
T d2axtt1 3 TITYVFIFAC 12 (30)
T ss_dssp HHHHHHHHHH
T ss_pred eeehHHHHHH
Confidence 4788876543
No 9
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.82 E-value=3.4e+02 Score=15.59 Aligned_cols=14 Identities=29% Similarity=0.752 Sum_probs=8.2
Q ss_pred hHHHH-HHHHHHHHH
Q 048240 334 RVTYI-LIFGAICLD 347 (664)
Q Consensus 334 ~ITyv-Ll~gai~lE 347 (664)
+++|+ |++|++.+-
T Consensus 4 i~syvglligal~~t 18 (32)
T d1q90l_ 4 ITSYVGLLIGALVFT 18 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 45565 666766543
No 10
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=3.54 E-value=4.3e+02 Score=20.63 Aligned_cols=70 Identities=23% Similarity=0.217 Sum_probs=37.4
Q ss_pred hCCCCcccccccchhHHHHHHHHHHHHHhhcCCC-CCcchHHHHHHHhcccCCCCc--ccccCCCCchhhHHHHHHHHHH
Q 048240 514 TQSGLMSAVAGIGKIRFRDTCAEAKRFFKSKNVT-SDKNIKDACDEILSVNTFAEP--AEVKGDRSKSLLFEATMLAKQL 590 (664)
Q Consensus 514 ~~P~MLP~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~--~~~~g~~~~~vl~~g~~La~~L 590 (664)
..|.- .|.++.-.+...++++++=..+... ....-...|+.|-.+-..... ...+|+ -.+|..||+++
T Consensus 25 ~nP~~----gg~Ge~AiR~il~earkva~~~~~P~~r~~il~lc~ei~~lt~qLadLr~~GkG~-----sPeA~~lA~qi 95 (117)
T d1st6a4 25 ADPNG----GSEGEEHIRGIMSEARKVAELCEEPKERDDILRSLGEISALTAKLSDLRRHGKGD-----SPEARALAKQI 95 (117)
T ss_dssp TCCSC----CSSTHHHHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHHHHHHHSCCS-----SHHHHHHHHHH
T ss_pred HCCCC----CChhHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CHHHHHHHHHH
Confidence 46752 3678888888999998877776432 212223345554322111000 112333 23677777777
Q ss_pred hc
Q 048240 591 KK 592 (664)
Q Consensus 591 ~~ 592 (664)
-+
T Consensus 96 ~~ 97 (117)
T d1st6a4 96 AT 97 (117)
T ss_dssp HH
T ss_pred HH
Confidence 53
Done!