BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048242
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 135/415 (32%), Positives = 188/415 (45%), Gaps = 36/415 (8%)
Query: 23 LW-FLERAATVHPTRKSVVY-----ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVL 76
LW FLERAA + RK VV E T+ + YQR RRL L L +G G V+ L
Sbjct: 20 LWDFLERAAALF-GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATL 78
Query: 77 SPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALK 136
N E +F VP GAVL+ N RL+P +A IL HAE ++ D L EA++
Sbjct: 79 GFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLV-EAIR 137
Query: 137 IMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQ 196
G K V+ DE L Y E L E DP + P E
Sbjct: 138 -------GELKTVQHFVVMDEKAPEGYLAYE--------EALGEEADP---VRVP--ERA 177
Query: 197 SIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWG--MKEGAVYLWTLPIFHGNGWCFT 254
+ + YT+GTT PKGV+ SHRA L SL L G + E V L +P+FH N WC
Sbjct: 178 ACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLP 237
Query: 255 WSLAALCGTSVML--RQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHV 312
++ A L G +L + ++ + GVT P V ++ + E T L +
Sbjct: 238 YA-ATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADY-LESTGHRLKTL 295
Query: 313 VNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNA 372
+ GGS P ++ + G V YGL+E + + +SL E + L A
Sbjct: 296 RRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKA 355
Query: 373 RQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
+ G+ + L V D + +P+P DGK +GEV ++G + GY N +A A
Sbjct: 356 KTGLPIPLVR-LRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSAL 408
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 98/406 (24%), Positives = 161/406 (39%), Gaps = 45/406 (11%)
Query: 27 ERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEV 86
R A + P R + + + T + R RLAS L + + G V++LS N M E+
Sbjct: 13 RRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIEL 72
Query: 87 HFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLF 146
V + GA+L +N+RLN +A +LG ++V Y + L + G +
Sbjct: 73 IGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAY- 131
Query: 147 KPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGT 206
IGD + AP + S T + PEF + +T+
Sbjct: 132 ------AIGDGSGPFAPFKDLASD--TPFSA------PEFGAA------DGFVIIHTAAV 171
Query: 207 TANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVM 266
P+G L+S + ++V W + E V L LP+FH G +L G SV+
Sbjct: 172 GGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVI 231
Query: 267 LRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPI 326
+ + I H VT +L +I++ + L V ++T P
Sbjct: 232 AAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLDT------PET 285
Query: 327 LLAMSQKGFRVTH--VYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGL 384
+ T +G SE +G +T + R + + + +
Sbjct: 286 IERFEATCPNATFWATFGQSETSGLSTFAPY-------------RDRPKSAGRPLFWRTV 332
Query: 385 DVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
V+D + ++P+P +GE+V+RG V KGY N A + AF NG
Sbjct: 333 AVVDAE-DRPLPP--GEVGEIVLRGPTVFKGYWNNAAATQHAFRNG 375
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 109/412 (26%), Positives = 173/412 (41%), Gaps = 46/412 (11%)
Query: 24 WFLERAATVHPTRKSVVYESK--HYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVP 81
W L + ATV P ++ V S T+ Q R A L+ L I G V++L PN
Sbjct: 6 WMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSV 65
Query: 82 AMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGK 141
+ +G GAV IN RL V+ IL + + +V Y A + + + +
Sbjct: 66 EFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVI----YGAPSAPVIDAIRAQ 121
Query: 142 SEGLFKPPVLIV--IGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIA 199
++ PP + IG ++ E+L E A + D+ ++
Sbjct: 122 AD----PPGTVTDWIGADSL---------------AERLRSAAADEPAVECGGDD--NLF 160
Query: 200 LGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAA 259
+ YTSGTT +PKGV+ +H + + + + T ++ L LP+FH T +A
Sbjct: 161 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALT-TVIFSA 219
Query: 260 LCGTSVM-LRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTG 318
+ G +++ + Q A ++ I E V A P +LN + PE L P TG
Sbjct: 220 MRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILN-FMRQVPEFAELDAPDFRYFITG 278
Query: 319 GSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKC 378
G+P P ++ + K V Y L+E G T+ L E R G
Sbjct: 279 GAPMPEALIKIYAAKNIEVVQGYALTESCGGGTL---------LLSEDALRKAGSAGRAT 329
Query: 379 MCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
M DV + I G+ GEVV++ ++++K Y P+A +AF NG
Sbjct: 330 MF---TDVAVRGDDGVIREHGE--GEVVIKSDILLKEYWNRPEATRDAFDNG 376
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 109/412 (26%), Positives = 173/412 (41%), Gaps = 46/412 (11%)
Query: 24 WFLERAATVHPTRKSVVYESK--HYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVP 81
W L + ATV P ++ V S T+ Q R A L+ L I G V++L PN
Sbjct: 20 WMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSV 79
Query: 82 AMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGK 141
+ +G GAV IN RL V+ IL + + +V Y A + + + +
Sbjct: 80 EFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVI----YGAPSAPVIDAIRAQ 135
Query: 142 SEGLFKPPVLIV--IGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIA 199
++ PP + IG ++ E+L E A + D+ ++
Sbjct: 136 AD----PPGTVTDWIGADSL---------------AERLRSAAADEPAVECGGDD--NLF 174
Query: 200 LGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAA 259
+ YTSGTT +PKGV+ +H + + + + T ++ L LP+FH T +A
Sbjct: 175 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALT-TVIFSA 233
Query: 260 LCGTSVM-LRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTG 318
+ G +++ + Q A ++ I E V A P +LN + PE L P TG
Sbjct: 234 MRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILN-FMRQVPEFAELDAPDFRYFITG 292
Query: 319 GSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKC 378
G+P P ++ + K V Y L+E G T+ L E R G
Sbjct: 293 GAPMPEALIKIYAAKNIEVVQGYALTESCGGGTL---------LLSEDALRKAGSAGRAT 343
Query: 379 MCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
M DV + I G+ GEVV++ ++++K Y P+A +AF NG
Sbjct: 344 MF---TDVAVRGDDGVIREHGE--GEVVIKSDILLKEYWNRPEATRDAFDNG 390
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 96/394 (24%), Positives = 165/394 (41%), Gaps = 56/394 (14%)
Query: 46 YTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLN 105
YT+ RR+AS L+++ I G + + P+ P G GA++ N
Sbjct: 50 YTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFST 109
Query: 106 PLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLE 165
P +A + A L+ Y+ K+ + E K V+ V D AP
Sbjct: 110 PAELAKHAKASRAKLLITQACYYE------KVKDFARESDVK--VMCV------DSAP-- 153
Query: 166 YALSKGVTEYEKLLETGD---PEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHR---- 218
G + +L + + P+ P +AL Y+SGTT PKGV+++H+
Sbjct: 154 ----DGCLHFSELTQADENEAPQVDISPD----DVVALPYSSGTTGLPKGVMLTHKGLIT 205
Query: 219 --AAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSV-----MLRQAS 271
A + N L + ++ V L LP+FH + + LCG V ++ +
Sbjct: 206 SVAQQVDGDNPNLYFHSED--VILCVLPMFH----IYALNSIMLCGLRVGAPILIMPKFE 259
Query: 272 AKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS 331
++ I ++ V+ P V+ SI +P D L + + +GG+P + +
Sbjct: 260 IGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDK-HDLSSLRMIKSGGAPLGKELEDTVR 318
Query: 332 QK--GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDT 389
K R+ YG++E GP V A + PF+ + G E + ++D
Sbjct: 319 AKFPQARLGQGYGMTE-AGP--VLAMCLAFAKEPFDIKP---GACGTVVRNAE-MKIVDP 371
Query: 390 KTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKAN 423
+T +P + GE+ +RG+ +MKGYL +P+A
Sbjct: 372 ETGASLPRNQP--GEICIRGDQIMKGYLNDPEAT 403
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 93/403 (23%), Positives = 165/403 (40%), Gaps = 58/403 (14%)
Query: 46 YTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLN 105
YT+ + R++A+ +L + V +L PN P GA N
Sbjct: 89 YTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFT 148
Query: 106 PLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGD-------ET 158
P +A + L+ + +Y + +K ++ +G+ V++ I D E
Sbjct: 149 PAEIAKQAKASNTKLIITEARYV----DKIKPLQ-NDDGV----VIVCIDDNESVPIPEG 199
Query: 159 CDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHR 218
C R L++ TE +++++ + P D +AL Y+SGTT PKGV+++H+
Sbjct: 200 CLRFT---ELTQSTTEASEVIDSVEIS-----PDD---VVALPYSSGTTGLPKGVMLTHK 248
Query: 219 ------AAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSV-----ML 267
A + N L + + V L LP+FH + + LCG V ++
Sbjct: 249 GLVTSVAQQVDGENPNLYFHSDD--VILCVLPMFH----IYALNSIMLCGLRVGAAILIM 302
Query: 268 RQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPIL 327
+ + + I VT P ++ +I + E L + V +G +P +
Sbjct: 303 PKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSS-ETEKYDLSSIRVVKSGAAPLGKELE 361
Query: 328 LAMSQK--GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLD 385
A++ K ++ YG++E GP + + P ++ A + + M + D
Sbjct: 362 DAVNAKFPNAKLGQGYGMTEA-GPVLAMSLGFAKEPFPVKSGACGTVVRNAE-MKIVDPD 419
Query: 386 VLDT-KTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
D+ NQP GE+ +RG+ +MKGYL NP A E
Sbjct: 420 TGDSLSRNQP--------GEICIRGHQIMKGYLNNPAATAETI 454
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 193 DEWQSIALGY-TSGTTANPKGVLVSHR---AAYLMSLNVVLTWGMKEGAVYLWTLPIFHG 248
D + +AL +SG+T PKGV ++H + + + + + G L +P HG
Sbjct: 189 DRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHG 248
Query: 249 NGWCFTWSLAALCGTSV-MLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTIL 307
G FT +CG V ML + + K + ++ TN P L +I+N
Sbjct: 249 FGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVP-TLFAILNKSELLNKY 306
Query: 308 PLPHVVNVNTGGSPPPPPILLAMSQK----GFRVTHVYGLSEINGPATVCAWNPNWDSLP 363
L ++V + +GG+P + A++++ G R YGL+E + P D P
Sbjct: 307 DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVR--QGYGLTETTSAIII---TPEGDDKP 361
Query: 364 FEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKAN 423
+ K + L V+D T + + + + GEV ++G M+MKGY+ NP+A
Sbjct: 362 GASG---------KVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEAT 410
Query: 424 EE 425
+E
Sbjct: 411 KE 412
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 102/424 (24%), Positives = 167/424 (39%), Gaps = 69/424 (16%)
Query: 25 FLERAATVHPTRKSVVYESK--HYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPA 82
L RAAT P ++ ++ T + R +A+ L + P V+V++PN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 83 MYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAE--AALVFVDQQYFALAEEALKIMEG 140
+ + GAV +N RL +A ++ E AA++ V +Q +A+ + G
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQ---VADAIFQSGSG 123
Query: 141 KSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIAL 200
+I +GD D P Y G P P R+ Q +
Sbjct: 124 AR--------IIFLGDLVRDGEPYSY---------------GPP--IEDPQREPAQPAFI 158
Query: 201 GYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGA--VYLWTLPIFHGNGWCFTWSLA 258
YTSGTT PK ++ RAA L + G++ G V L +P++H G+ F +A
Sbjct: 159 FYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF-FAVLVA 217
Query: 259 ALC--GTSVMLRQASAKAIYKAIAEHGVTNFCAAPI-VLNSIVNAPPEDTILPLPHVVNV 315
AL GT V++ + + + + VT+ A P + A + L L + +V
Sbjct: 218 ALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHV 277
Query: 316 NTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLP---------FEA 366
G+ P +L + Q H+ G ++NG T A N + P F +
Sbjct: 278 TFAGATMPDAVLETVHQ------HLPG-EKVNGYGTTEAMNSLYMRQPKTGTEMAPGFFS 330
Query: 367 QARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEA 426
+ R+ G G+D I A+G+ +V + GYL P+A E
Sbjct: 331 EVRIVRIGG-------GVD--------EIVANGEEGELIVAASDSAFVGYLNQPQATAEK 375
Query: 427 FANG 430
+G
Sbjct: 376 LQDG 379
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 193 DEWQSIALGY-TSGTTANPKGVLVSHR---AAYLMSLNVVLTWGMKEGAVYLWTLPIFHG 248
D + +AL +SG+T PKGV ++H + + + + + G L +P HG
Sbjct: 189 DRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHG 248
Query: 249 NGWCFTWSLAALCGTSV-MLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTIL 307
G FT +CG V ML + + K + ++ T+ P L +I+N
Sbjct: 249 FGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVP-TLFAILNKSELLNKY 306
Query: 308 PLPHVVNVNTGGSPPPPPILLAMSQK----GFRVTHVYGLSEINGPATVCAWNPNWDSLP 363
L ++V + +GG+P + A++++ G R YGL+E + P D P
Sbjct: 307 DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVR--QGYGLTETTSAIII---TPEGDDKP 361
Query: 364 FEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKAN 423
+ K + L V+D T + + + + GEV ++G M+MKGY+ NP+A
Sbjct: 362 GASG---------KVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEAT 410
Query: 424 EE 425
+E
Sbjct: 411 KE 412
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 193 DEWQSIALGY-TSGTTANPKGVLVSHR---AAYLMSLNVVLTWGMKEGAVYLWTLPIFHG 248
D + +AL +SG+T PKGV ++H + + + + + G L +P HG
Sbjct: 189 DRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHG 248
Query: 249 NGWCFTWSLAALCGTSV-MLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTIL 307
G FT +CG V ML + + K + ++ T+ P L +I+N
Sbjct: 249 FGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVP-TLFAILNKSELLNKY 306
Query: 308 PLPHVVNVNTGGSPPPPPILLAMSQK----GFRVTHVYGLSEINGPATVCAWNPNWDSLP 363
L ++V + +GG+P + A++++ G R YGL+E + P D P
Sbjct: 307 DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVR--QGYGLTETTSAIII---TPEGDDKP 361
Query: 364 FEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKAN 423
+ K + L V+D T + + + + GEV ++G M+MKGY+ NP+A
Sbjct: 362 GASG---------KVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEAT 410
Query: 424 EE 425
+E
Sbjct: 411 KE 412
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 102/423 (24%), Positives = 168/423 (39%), Gaps = 67/423 (15%)
Query: 25 FLERAATVHPTRKSVVYESK--HYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPA 82
L RAAT P ++ ++ T + R +A+ L + P V+V++PN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 83 MYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAE--AALVFVDQQYFALAEEALKIMEG 140
+ + GAV +N RL +A ++ E AA++ V +Q +A+ + G
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQ---VADAIFQSGSG 123
Query: 141 KSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIAL 200
+I +GD D P Y G P P R+ Q +
Sbjct: 124 AR--------IIFLGDLVRDGEPYSY---------------GPP--IEDPQREPAQPAFI 158
Query: 201 GYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGA--VYLWTLPIFHGNGWCFTWSLA 258
YTSGTT PK ++ RAA L + G++ G V L +P++H G+ F +A
Sbjct: 159 FYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF-FAVLVA 217
Query: 259 ALC--GTSVMLRQASAKAIYKAIAEHGVTNFCAAPI-VLNSIVNAPPEDTILPLPHVVNV 315
AL GT V++ + + + + VT+ A P + A + L L + +V
Sbjct: 218 ALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHV 277
Query: 316 NTGGSPPPPPILLAMSQK--GFRVTHVYGLSE------INGPATVCAWNPNWDSLPFEAQ 367
G+ P +L + Q G +V ++YG +E + P T P F ++
Sbjct: 278 TFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQPKTGTEMAPG-----FFSE 331
Query: 368 ARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
R+ G G+D I A+G+ +V + GYL P+A E
Sbjct: 332 VRIVRIGG-------GVD--------EIVANGEEGELIVAASDSAFVGYLNQPEATAEKL 376
Query: 428 ANG 430
+G
Sbjct: 377 QDG 379
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 102/423 (24%), Positives = 168/423 (39%), Gaps = 67/423 (15%)
Query: 25 FLERAATVHPTRKSVVYESK--HYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPA 82
L RAAT P ++ ++ T + R +A+ L + P V+V++PN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 83 MYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAE--AALVFVDQQYFALAEEALKIMEG 140
+ + GAV +N RL +A ++ E AA++ V +Q +A+ + G
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQ---VADAIFQSGSG 123
Query: 141 KSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIAL 200
+I +GD D P Y G P P R+ Q +
Sbjct: 124 AR--------IIFLGDLVRDGEPYSY---------------GPP--IEDPQREPAQPAFI 158
Query: 201 GYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGA--VYLWTLPIFHGNGWCFTWSLA 258
YTSGTT PK ++ RAA L + G++ G V L +P++H G+ F +A
Sbjct: 159 FYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF-FAVLVA 217
Query: 259 ALC--GTSVMLRQASAKAIYKAIAEHGVTNFCAAPI-VLNSIVNAPPEDTILPLPHVVNV 315
AL GT V++ + + + + VT+ A P + A + L L + +V
Sbjct: 218 ALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHV 277
Query: 316 NTGGSPPPPPILLAMSQK--GFRVTHVYGLSE------INGPATVCAWNPNWDSLPFEAQ 367
G+ P +L + Q G +V ++YG +E + P T P F ++
Sbjct: 278 TFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQPKTGTEMAPG-----FFSE 331
Query: 368 ARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
R+ G G+D I A+G+ +V + GYL P+A E
Sbjct: 332 VRIVRIGG-------GVD--------EIVANGEEGELIVAASDSAFVGYLNQPQATAEKL 376
Query: 428 ANG 430
+G
Sbjct: 377 QDG 379
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 102/423 (24%), Positives = 168/423 (39%), Gaps = 67/423 (15%)
Query: 25 FLERAATVHPTRKSVVYESK--HYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPA 82
L RAAT P ++ ++ T + R +A+ L + P V+V++PN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 83 MYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAE--AALVFVDQQYFALAEEALKIMEG 140
+ + GAV +N RL +A ++ E AA++ V +Q +A+ + G
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQ---VADAIFQSGSG 123
Query: 141 KSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIAL 200
+I +GD D P Y G P P R+ Q +
Sbjct: 124 AR--------IIFLGDLVRDGEPYSY---------------GPP--IEDPQREPAQPAFI 158
Query: 201 GYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGA--VYLWTLPIFHGNGWCFTWSLA 258
YTSGTT PK ++ RAA L + G++ G V L +P++H G+ F +A
Sbjct: 159 FYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF-FAVLVA 217
Query: 259 ALC--GTSVMLRQASAKAIYKAIAEHGVTNFCAAPI-VLNSIVNAPPEDTILPLPHVVNV 315
AL GT V++ + + + + VT+ A P + A + L L + +V
Sbjct: 218 ALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHV 277
Query: 316 NTGGSPPPPPILLAMSQK--GFRVTHVYGLSE------INGPATVCAWNPNWDSLPFEAQ 367
G+ P +L + Q G +V ++YG +E + P T P F ++
Sbjct: 278 TFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQPKTGTEMAPG-----FFSE 331
Query: 368 ARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
R+ G G+D I A+G+ +V + GYL P+A E
Sbjct: 332 VRIVRIGG-------GVD--------EIVANGEEGELIVAASDSAFVGYLNQPQATAEKL 376
Query: 428 ANG 430
+G
Sbjct: 377 QDG 379
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 101/424 (23%), Positives = 166/424 (39%), Gaps = 69/424 (16%)
Query: 25 FLERAATVHPTRKSVVYESK--HYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPA 82
L RAAT P ++ ++ T + R +A+ L + P V+V++PN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 83 MYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAE--AALVFVDQQYFALAEEALKIMEG 140
+ + GAV +N RL +A ++ E AA++ V +Q +A+ + G
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQ---VADAIFQSGSG 123
Query: 141 KSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIAL 200
+I +GD D P Y G P P R+ Q +
Sbjct: 124 AR--------IIFLGDLVRDGEPYSY---------------GPP--IEDPQREPAQPAFI 158
Query: 201 GYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGA--VYLWTLPIFHGNGWCFTWSLA 258
YTSGTT PK ++ RAA L + G++ G V L +P++H G+ F +A
Sbjct: 159 FYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF-FAVLVA 217
Query: 259 ALC--GTSVMLRQASAKAIYKAIAEHGVTNFCAAPI-VLNSIVNAPPEDTILPLPHVVNV 315
AL GT V++ + + + + VT+ A P + A + L L + +V
Sbjct: 218 ALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHV 277
Query: 316 NTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLP---------FEA 366
G+ P +L + Q H+ G ++N T A N + P F +
Sbjct: 278 TFAGATMPDAVLETVHQ------HLPG-EKVNAYGTTEAMNSLYMRQPKTGTEMAPGFFS 330
Query: 367 QARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEA 426
+ R+ G G+D I A+G+ +V + GYL P+A E
Sbjct: 331 EVRIVRIGG-------GVD--------EIVANGEEGELIVAASDSAFVGYLNQPQATAEK 375
Query: 427 FANG 430
+G
Sbjct: 376 LQDG 379
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 86/398 (21%), Positives = 168/398 (42%), Gaps = 64/398 (16%)
Query: 47 TWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVL--------- 97
T+ + ++ RLA A+ + + + V S N + F +P+ GA+
Sbjct: 57 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSEN-----SLQFFMPVLGALFIGVAVAPAN 111
Query: 98 NCINFR--LNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVL--IV 153
+C N R LN +N++ + +VFV ++ ++ L + + K P++ I+
Sbjct: 112 DCYNERELLNSMNIS------QPTVVFVSKKGL---QKILNVQK-------KLPIIQKII 155
Query: 154 IGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPR-DEWQSIALGY-TSGTTANPK 211
I D D + ++ VT + L G E+ + P D ++IAL +SG+T PK
Sbjct: 156 IMDSKTDYQGFQ-SMYTFVTSH---LPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPK 211
Query: 212 GVLVSHRA---AYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR 268
GV + HRA + + + + + L +P HG G T V++
Sbjct: 212 GVALPHRALAVRFSHARDPIFGNQIAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMY 271
Query: 269 QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILL 328
+ + +++ ++ + + P + + + + D L ++ + +GG+P +
Sbjct: 272 RFEEELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDK-YDLSNLHEIASGGAPLSKEVGE 330
Query: 329 AMSQK----GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGL 384
A++++ G R YGL+E + P D P K +
Sbjct: 331 AVAKRFHLPGIR--QGYGLTETTSAILIT---PKGDDKPGAVG---------KVVPFFEA 376
Query: 385 DVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKA 422
V+D T + + + + GE+ +RG M+M GY+ NP+A
Sbjct: 377 KVVDLDTGKTLGVNQR--GELSVRGPMIMSGYVNNPEA 412
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 89/399 (22%), Positives = 171/399 (42%), Gaps = 66/399 (16%)
Query: 47 TWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVL--------- 97
T+ + ++ RLA A+ + + + V S N + F +P+ GA+
Sbjct: 52 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSEN-----SLQFFMPVLGALFIGVAVAPAN 106
Query: 98 NCINFR--LNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVL--IV 153
+ N R LN +N++ + +VFV ++ ++ L + + K P++ I+
Sbjct: 107 DIYNERELLNSMNIS------QPTVVFVSKKGL---QKILNVQK-------KLPIIQKII 150
Query: 154 IGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPR-DEWQSIALGY-TSGTTANPK 211
I D D + ++ VT + L G E+ + P D ++IAL +SG+T PK
Sbjct: 151 IMDSKTDYQGFQ-SMYTFVTSH---LPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPK 206
Query: 212 GVLVSHRAA---YLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR 268
GV + HR A + + + + + L +P HG G FT +CG V+L
Sbjct: 207 GVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGM-FTTLGYLICGFRVVLM 265
Query: 269 QASAKAIY-KAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPIL 327
+ ++ +++ ++ + + P + + + D L ++ + +GG+P +
Sbjct: 266 YRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK-YDLSNLHEIASGGAPLSKEVG 324
Query: 328 LAMSQK----GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEG 383
A++++ G R YGL+E + P D P K +
Sbjct: 325 EAVAKRFHLPGIR--QGYGLTETTSAILIT---PEGDDKPGAVG---------KVVPFFE 370
Query: 384 LDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKA 422
V+D T + + + + GE+ +RG M+M GY+ NP+A
Sbjct: 371 AKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVNNPEA 407
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 100/417 (23%), Positives = 164/417 (39%), Gaps = 57/417 (13%)
Query: 26 LERAATVHPTRKSVVYESK--HYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAM 83
L RAAT P ++ ++ T + R +A+ L + P V+V++PN +
Sbjct: 8 LRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV 67
Query: 84 YEVHFGVPMTGAVLNCINFRLNPLNVAIIL--GHAEAALVFVDQQYFALAEEALKIMEGK 141
+ GAV +N RL +A ++ G AA++ V +Q +A+ + G
Sbjct: 68 VIAILALHRLGAVPALLNPRLKSAELAELIKRGEXTAAVIAVGRQ---VADAIFQSGSGA 124
Query: 142 SEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALG 201
+I +GD D P Y G P P R+ Q +
Sbjct: 125 R--------IIFLGDLVRDGEPYSY---------------GPP--IEDPQREPAQPAFIF 159
Query: 202 YTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGA--VYLWTLPIFHGNGWCFTWSLAA 259
YTSGTT PK ++ RAA L G++ G V L P++H G+ F +AA
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGRHNVVLGLXPLYHVVGF-FAVLVAA 218
Query: 260 LC--GTSVMLRQASAKAIYKAIAEHGVTNFCAAPI-VLNSIVNAPPEDTILPLPHVVNVN 316
L GT V++ + + + + VT+ A P + A + L L + +V
Sbjct: 219 LALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVT 278
Query: 317 TGGSPPPPPILLAMSQK--GFRVTHVYGLSEINGPATVCAWNPNWDSLP-FEAQARLNAR 373
G+ P +L + Q G +V ++YG +E + P F ++ R+
Sbjct: 279 FAGATXPDAVLETVHQHLPGEKV-NIYGTTEAXNSLYXRQPKTGTEXAPGFFSEVRIVRI 337
Query: 374 QGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
G G+D I A+G+ +V + GYL P+A E +G
Sbjct: 338 GG-------GVD--------EIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDG 379
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 89/399 (22%), Positives = 171/399 (42%), Gaps = 66/399 (16%)
Query: 47 TWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVL--------- 97
T+ + ++ RLA A+ + + + V S N + F +P+ GA+
Sbjct: 57 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSEN-----SLQFFMPVLGALFIGVAVAPAN 111
Query: 98 NCINFR--LNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVL--IV 153
+ N R LN +N++ + +VFV ++ ++ L + + K P++ I+
Sbjct: 112 DIYNERELLNSMNIS------QPTVVFVSKKGL---QKILNVQK-------KLPIIQKII 155
Query: 154 IGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPR-DEWQSIALGY-TSGTTANPK 211
I D D + ++ VT + L G E+ + P D ++IAL +SG+T PK
Sbjct: 156 IMDSKTDYQGFQ-SMYTFVTSH---LPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPK 211
Query: 212 GVLVSHRAA---YLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR 268
GV + HR A + + + + + L +P HG G FT +CG V+L
Sbjct: 212 GVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGM-FTTLGYLICGFRVVLM 270
Query: 269 QASAKAIY-KAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPIL 327
+ ++ +++ ++ + + P + + + D L ++ + +GG+P +
Sbjct: 271 YRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK-YDLSNLHEIASGGAPLSKEVG 329
Query: 328 LAMSQK----GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEG 383
A++++ G R YGL+E + P D P K +
Sbjct: 330 EAVAKRFHLPGIR--QGYGLTETTSAILIT---PEGDDKPGAVG---------KVVPFFE 375
Query: 384 LDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKA 422
V+D T + + + + GE+ +RG M+M GY+ NP+A
Sbjct: 376 AKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVNNPEA 412
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 89/399 (22%), Positives = 171/399 (42%), Gaps = 66/399 (16%)
Query: 47 TWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVL--------- 97
T+ + ++ RLA A+ + + + V S N + F +P+ GA+
Sbjct: 52 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSEN-----SLQFFMPVLGALFIGVAVAPAN 106
Query: 98 NCINFR--LNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVL--IV 153
+ N R LN +N++ + +VFV ++ ++ L + + K P++ I+
Sbjct: 107 DIYNERELLNSMNIS------QPTVVFVSKKGL---QKILNVQK-------KLPIIQKII 150
Query: 154 IGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPR-DEWQSIALGY-TSGTTANPK 211
I D D + ++ VT + L G E+ + P D ++IAL +SG+T PK
Sbjct: 151 IMDSKTDYQGFQ-SMYTFVTSH---LPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPK 206
Query: 212 GVLVSHRAA---YLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR 268
GV + HR A + + + + + L +P HG G FT +CG V+L
Sbjct: 207 GVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGM-FTTLGYLICGFRVVLM 265
Query: 269 QASAKAIY-KAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPIL 327
+ ++ +++ ++ + + P + + + D L ++ + +GG+P +
Sbjct: 266 YRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK-YDLSNLHEIASGGAPLSKEVG 324
Query: 328 LAMSQK----GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEG 383
A++++ G R YGL+E + P D P K +
Sbjct: 325 EAVAKRFHLPGIR--QGYGLTETTSAILIT---PEGDDKPGAVG---------KVVPFFE 370
Query: 384 LDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKA 422
V+D T + + + + GE+ +RG M+M GY+ NP+A
Sbjct: 371 AKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVNNPEA 407
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 113/292 (38%), Gaps = 29/292 (9%)
Query: 16 NFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSV 75
NF A +L R + + + ++ T+ + +R RR ASAL L + P + +
Sbjct: 24 NFAA-----YLFRLNETRAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILL 78
Query: 76 LSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEAL 135
+ + A+ G G V N L P + +L H+ A V +AL
Sbjct: 79 VMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQAL 138
Query: 136 KIMEGKSEGLFKPPVLIVIGDETCDR-APLEYALSKGVTEYEKLLETGDPEFAWKPPRDE 194
+ E L ++ E+ R APL L K TG + A+
Sbjct: 139 ESAEHDGCQL-----IVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAF------ 187
Query: 195 WQSIALGYTSGTTANPKGVLVSHRAAY-LMSLNVVLTWGMKEGAVYLWTLPIFH----GN 249
W Y+SG+T PKG + +H Y L G+ E V +F GN
Sbjct: 188 WL-----YSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGN 242
Query: 250 GWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAP 301
G F S+ A +M + +A AI+ + EH T F P + +++ +P
Sbjct: 243 GLTFPLSVGATA--ILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSP 292
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 83/405 (20%), Positives = 169/405 (41%), Gaps = 75/405 (18%)
Query: 47 TWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCI-----N 101
T+ + ++ RLA + + +G ++V S N + F +P+ GA+ + N
Sbjct: 86 TYSEYFEMACRLAETMKRYGLGLQHHIAVCSEN-----SLQFFMPVCGALFIGVGVAPTN 140
Query: 102 FRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVL--IVIGDETC 159
N + L ++ +VF ++ AL+ + G + L P++ IVI D
Sbjct: 141 DIYNERELYNSLSISQPTIVFCSKR-------ALQKILGVQKKL---PIIQKIVILDSRE 190
Query: 160 DR-------APLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKG 212
D + +E L G EY+ + ++ D E A + + +SG+T PKG
Sbjct: 191 DYMGKQSMYSFIESHLPAGFNEYDYIPDSFDRETA---------TALIMNSSGSTGLPKG 241
Query: 213 VLVSHRAAYLMSLNVVLTWGMKEGAVY----------LWTLPIFHGNGWCFTWSLAALCG 262
V ++H+ N+ + + V+ L +P HG G FT CG
Sbjct: 242 VELTHK-------NICVRFSHCRDPVFGNQIIPDTAILTVIPFHHGFGM-FTTLGYLTCG 293
Query: 263 TSVMLRQASAKAIY-KAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSP 321
++L + ++ +++ ++ + + P + + + D L ++ + +GG+P
Sbjct: 294 FRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLVDK-YDLSNLHEIASGGAP 352
Query: 322 PPPPILLAMSQKGFR---VTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKC 378
+ A++++ F+ + YGL+E + + D P K
Sbjct: 353 LAKEVGEAVAKR-FKLPGIRQGYGLTETT--SAIIITPRGRDDKPGACG---------KV 400
Query: 379 MCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKAN 423
+ ++D T + + + + GE+ ++G M+MKGY+ NP+A
Sbjct: 401 VPFFSAKIVDLDTGKTLGVNQR--GELCVKGPMIMKGYVNNPEAT 443
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 94/242 (38%), Gaps = 41/242 (16%)
Query: 202 YTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALC 261
YTSGTT PKG ++ RA + W V + LP+FH +G
Sbjct: 162 YTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRR 221
Query: 262 GTSVM-LRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGS 320
G SV L + S + + + + G T P + + I P D P + G
Sbjct: 222 GGSVRHLGRFSTEGAARELND-GATMLFGVPTMYHRIAETLPAD-----PELAKALAGAR 275
Query: 321 PPPPPILLAMSQ-------------KGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQ 367
+L++ S G RV YG++E T+ + D P
Sbjct: 276 -----LLVSGSAALPVHDHERIAAATGRRVIERYGMTE-----TLMNTSVRADGEP---- 321
Query: 368 ARLNARQGVKCMCLEGLDV-LDTKTNQPIPA-DGKTIGEVVMRGNMVMKGYLKNPKANEE 425
R G + L G+++ L + PI A DG+++GE+ +RG + YL P A
Sbjct: 322 -----RAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAA 376
Query: 426 AF 427
AF
Sbjct: 377 AF 378
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 94/241 (39%), Gaps = 35/241 (14%)
Query: 199 ALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258
A+ YTSGTT KG +SH SL +V W V + LPI+H +G ++
Sbjct: 159 AILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT 218
Query: 259 ALC-GTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNT 317
G+ + L + I A T P ++ + P T H +
Sbjct: 219 LFARGSXIFLPKFDPDKILDLXAR--ATVLXGVPTFYTRLLQS-PRLTKETTGHXRLFIS 275
Query: 318 GGSPPPPPILLAMSQK------GFRVTHVYGLSEINGPATVCAWNP-NWDSLPFEAQARL 370
G +P LLA + + G V YG +E N + NP + D +P
Sbjct: 276 GSAP-----LLADTHREWSAKTGHAVLERYGXTETNXNTS----NPYDGDRVP------- 319
Query: 371 NARQGVKCMCLEGLD--VLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFA 428
G L G+ V D +T + +P IG + ++G V KGY + P+ + F
Sbjct: 320 ----GAVGPALPGVSARVTDPETGKELPR--GDIGXIEVKGPNVFKGYWRXPEKTKSEFR 373
Query: 429 N 429
+
Sbjct: 374 D 374
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 113/287 (39%), Gaps = 17/287 (5%)
Query: 26 LERAATVHPTRKSVVYE------SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPN 79
L+R + R ++++E SKH ++++ ++ R A+ L L I G V++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80 VPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIME 139
VP GAV + I +P VA + + + LV + A ++ + +
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADE-GVRAGRSIPLKK 200
Query: 140 GKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEY-EKLLETGDPEFAWKPPRDEWQSI 198
+ L P V V R + +G + L+E PE + E +
Sbjct: 201 NVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAE-DPL 259
Query: 199 ALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTW--GMKEGAVYLWTLPIFHGNGWCFTWS 256
+ YTSG+T PKGVL + YL+ + G +Y T + G +
Sbjct: 260 FILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLY 318
Query: 257 LAALCGTSVMLRQA-----SAKAIYKAIAEHGVTNFCAAPIVLNSIV 298
CG + ++ + + + + + +H V AP + +++
Sbjct: 319 GPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALM 365
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 157/401 (39%), Gaps = 40/401 (9%)
Query: 38 SVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA-- 95
+V+ + ++++ Q LA +L + I PG V NV +Y F + G
Sbjct: 43 AVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAP 102
Query: 96 VLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALA-EEALKIMEGKSEGLFKPPVLIVI 154
VL + + + LN E AL+ D+Q+ + ++ L + + +L
Sbjct: 103 VLALFSHQRSELNA--YASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDS 160
Query: 155 GDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVL 214
G+ L+ A++ ++ T P P DE L + GTT PK +
Sbjct: 161 GEHN-----LQDAINHPAEDF-----TATPS-----PADEVAYFQL--SGGTTGTPKLIP 203
Query: 215 VSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALC--GTSVMLRQASA 272
+H Y V + YL +P H SL GT V+ SA
Sbjct: 204 RTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSA 263
Query: 273 KAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE-DTILPLPHVVNVNTGGSPPPPPILLAM- 330
+ I +H V P ++ + A E ++ L + + GG+ + +
Sbjct: 264 TLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIP 323
Query: 331 SQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTK 390
++ G ++ V+G++E N+ L A+ ++ QG + + V D +
Sbjct: 324 AEIGCQLQQVFGMAE---------GLVNYTRLDDSAEKIIHT-QGYPMCPDDEVWVADAE 373
Query: 391 TNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF-ANG 430
N P+P +G ++ RG +GY K+P+ N AF ANG
Sbjct: 374 GN-PLPQ--GEVGRLMTRGPYTFRGYYKSPQHNASAFDANG 411
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 113/287 (39%), Gaps = 17/287 (5%)
Query: 26 LERAATVHPTRKSVVYE------SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPN 79
L+R + R ++++E SKH ++++ ++ R A+ L L I G V++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80 VPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIME 139
VP GAV + I +P VA + + + LV + A ++ + +
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE-GVRAGRSIPLKK 200
Query: 140 GKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEY-EKLLETGDPEFAWKPPRDEWQSI 198
+ L P V V R + +G + L+E PE + E +
Sbjct: 201 NVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAE-DPL 259
Query: 199 ALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTW--GMKEGAVYLWTLPIFHGNGWCFTWS 256
+ YTSG+T PKGVL + YL+ + G +Y T + G +
Sbjct: 260 FILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLY 318
Query: 257 LAALCGTSVMLRQA-----SAKAIYKAIAEHGVTNFCAAPIVLNSIV 298
CG + ++ + + + + + +H V AP + +++
Sbjct: 319 GPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALM 365
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 113/287 (39%), Gaps = 17/287 (5%)
Query: 26 LERAATVHPTRKSVVYE------SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPN 79
L+R + R ++++E SKH ++++ ++ R A+ L L I G V++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80 VPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIME 139
VP GAV + I +P VA + + + LV + A ++ + +
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE-GVRAGRSIPLKK 200
Query: 140 GKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEY-EKLLETGDPEFAWKPPRDEWQSI 198
+ L P V V R + +G + L+E PE + E +
Sbjct: 201 NVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAE-DPL 259
Query: 199 ALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTW--GMKEGAVYLWTLPIFHGNGWCFTWS 256
+ YTSG+T PKGVL + YL+ + G +Y T + G +
Sbjct: 260 FILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLY 318
Query: 257 LAALCGTSVMLRQA-----SAKAIYKAIAEHGVTNFCAAPIVLNSIV 298
CG + ++ + + + + + +H V AP + +++
Sbjct: 319 GPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALM 365
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 114/288 (39%), Gaps = 19/288 (6%)
Query: 26 LERAATVHPTRKSVVYE------SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPN 79
L+R + R ++++E SKH ++++ ++ R A+ L L I G V++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80 VPAMYEVHFGVPMTGAVLNCINFRLNPLNVA-IILGHAEAALVFVDQQYFALAEEALKIM 138
VP GAV + I +P VA I+ + ++ D+ A A LK
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGASIPLK-- 199
Query: 139 EGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEY-EKLLETGDPEFAWKPPRDEWQS 197
+ + L P V V R + +G + L+E PE + E
Sbjct: 200 KNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAE-DP 258
Query: 198 IALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTW--GMKEGAVYLWTLPIFHGNGWCFTW 255
+ + YTSG+T PKGVL + YL+ + G +Y T + G +
Sbjct: 259 LFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLL 317
Query: 256 SLAALCGTSVMLRQA-----SAKAIYKAIAEHGVTNFCAAPIVLNSIV 298
CG + ++ + + + + + +H V AP + +++
Sbjct: 318 YGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALM 365
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 113/287 (39%), Gaps = 17/287 (5%)
Query: 26 LERAATVHPTRKSVVYE------SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPN 79
L+R + R ++++E SKH ++++ ++ R A+ L L I G V++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80 VPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIME 139
VP GAV + I +P VA + + + LV + A ++ + +
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE-GVRAGRSIPLKK 200
Query: 140 GKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEY-EKLLETGDPEFAWKPPRDEWQSI 198
+ L P V V R + +G + L+E PE + E +
Sbjct: 201 NVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAE-DPL 259
Query: 199 ALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTW--GMKEGAVYLWTLPIFHGNGWCFTWS 256
+ YTSG+T PKGVL + YL+ + G +Y T + G +
Sbjct: 260 FILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLY 318
Query: 257 LAALCGTSVMLRQA-----SAKAIYKAIAEHGVTNFCAAPIVLNSIV 298
CG + ++ + + + + + +H V AP + +++
Sbjct: 319 GPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALM 365
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 113/287 (39%), Gaps = 17/287 (5%)
Query: 26 LERAATVHPTRKSVVYE------SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPN 79
L+R + R ++++E SKH ++++ ++ R A+ L L I G V++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80 VPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIME 139
VP GAV + I +P VA + + + LV + A ++ + +
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE-GVRAGRSIPLKK 200
Query: 140 GKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEY-EKLLETGDPEFAWKPPRDEWQSI 198
+ L P V V R + +G + L+E PE + E +
Sbjct: 201 NVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAE-DPL 259
Query: 199 ALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTW--GMKEGAVYLWTLPIFHGNGWCFTWS 256
+ YTSG+T PKGVL + YL+ + G +Y T + G +
Sbjct: 260 FILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLY 318
Query: 257 LAALCGTSVMLRQA-----SAKAIYKAIAEHGVTNFCAAPIVLNSIV 298
CG + ++ + + + + + +H V AP + +++
Sbjct: 319 GPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALM 365
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 113/287 (39%), Gaps = 17/287 (5%)
Query: 26 LERAATVHPTRKSVVYE------SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPN 79
L+R + R ++++E SKH ++++ ++ R A+ L L I G V++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80 VPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIME 139
VP GAV + I +P VA + + + LV + A ++ + +
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE-GVRAGRSIPLKK 200
Query: 140 GKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEY-EKLLETGDPEFAWKPPRDEWQSI 198
+ L P V V R + +G + L+E PE + E +
Sbjct: 201 NVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAE-DPL 259
Query: 199 ALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTW--GMKEGAVYLWTLPIFHGNGWCFTWS 256
+ YTSG+T PKGVL + YL+ + G +Y T + G +
Sbjct: 260 FILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLY 318
Query: 257 LAALCGTSVMLRQA-----SAKAIYKAIAEHGVTNFCAAPIVLNSIV 298
CG + ++ + + + + + +H V AP + +++
Sbjct: 319 GPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALM 365
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 101/422 (23%), Positives = 146/422 (34%), Gaps = 86/422 (20%)
Query: 25 FLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMY 84
E A P ++++E+ T+ +R RLA L L + PGT V V
Sbjct: 80 LFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGV--------- 130
Query: 85 EVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQY----FALAEEA----LK 136
+ G M A+L + A +D Q+ AL+ E L
Sbjct: 131 HLERGFDMVVALLAVLK--------------AGGGYTMLDPQFPVERLALSLEDTGAPLL 176
Query: 137 IMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQ 196
+ G + + DE AP L+ GV P D
Sbjct: 177 VTSRPLSGRLTGTTTLYVEDEAASDAPAGN-LATGVG-----------------PED--- 215
Query: 197 SIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGW-CFTW 255
+ +TSG+T PKGV+ HRA L G V+L P+ W F
Sbjct: 216 VACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYA-GFGPDEVFLQCSPV----SWDAFGL 270
Query: 256 SL--AALCGTSVMLRQASAK---AIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLP 310
L A L G +L+ I + +A HGVT + + N +V+ PE
Sbjct: 271 ELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----AFE 326
Query: 311 HVVNVNTGGSPPPPPILLAMSQK--GFRVTHVYGLSEINGPAT---VCAWNPNWDSLPFE 365
V TGG P P + + R+ + YG +E G T V A + + +LP
Sbjct: 327 GVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPI- 385
Query: 366 AQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEE 425
GV VLD PA +GE+ + G + GY+ P E
Sbjct: 386 ---------GVPLAGKRAY-VLDDDLK---PAANGALGELYVAGAGLAHGYVSRPALTAE 432
Query: 426 AF 427
F
Sbjct: 433 RF 434
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 101/422 (23%), Positives = 146/422 (34%), Gaps = 86/422 (20%)
Query: 25 FLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMY 84
E A P ++++E+ T+ +R RLA L L + PGT V V
Sbjct: 80 LFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGV--------- 130
Query: 85 EVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQY----FALAEEA----LK 136
+ G M A+L + A +D Q+ AL+ E L
Sbjct: 131 HLERGFDMVVALLAVLK--------------AGGGYTMLDPQFPVERLALSLEDTGAPLL 176
Query: 137 IMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQ 196
+ G + + DE AP L+ GV P D
Sbjct: 177 VTSRPLSGRLTGTTTLYVEDEAASDAPAGN-LATGVG-----------------PED--- 215
Query: 197 SIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGW-CFTW 255
+ +TSG+T PKGV+ HRA L G V+L P+ W F
Sbjct: 216 VACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYA-GFGPDEVFLQCSPV----SWDAFGL 270
Query: 256 SL--AALCGTSVMLRQASAK---AIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLP 310
L A L G +L+ I + +A HGVT + + N +V+ PE
Sbjct: 271 ELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----AFE 326
Query: 311 HVVNVNTGGSPPPPPILLAMSQK--GFRVTHVYGLSEINGPAT---VCAWNPNWDSLPFE 365
V TGG P P + + R+ + YG +E G T V A + + +LP
Sbjct: 327 GVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPI- 385
Query: 366 AQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEE 425
GV VLD PA +GE+ + G + GY+ P E
Sbjct: 386 ---------GVPLAGKRAY-VLDDDLK---PAANGALGELYVAGAGLAHGYVSRPALTAE 432
Query: 426 AF 427
F
Sbjct: 433 RF 434
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 103/274 (37%), Gaps = 38/274 (13%)
Query: 187 AWKPPRDEWQSIA-LGYTSGTTANPKGVLVSHRAAYLMSLNVVLT--WGMKEGAVYLWTL 243
+W+P + IA L YTSG+T +PKGV VSH L +LN + T E ++ W L
Sbjct: 158 SWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNL-LDNLNKIFTSFHXNDETIIFSW-L 215
Query: 244 PIFHGNGWC------FTWSLAALCGTSVMLRQ---ASAKAI--YKAIAEHGVTNFCAAPI 292
P H G + A+ + Q + K I YKA G NF A
Sbjct: 216 PPHHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLKHITKYKATIS-GSPNF-AYDY 273
Query: 293 VLNSIVNAPPEDTILPLPHVVNVNTGGSP----PPPPILLAMSQKGFRVTHV---YGLSE 345
+ I E L L V G P A + GFR YGL+E
Sbjct: 274 CVKRIREEKKEG--LDLSSWVTAFNGAEPVREETXEHFYQAFKEFGFRKEAFYPCYGLAE 331
Query: 346 INGPATVCAWNPNWDSLPFEAQARLNARQ--------GVKCMCLEGLDVLDTKTNQP--- 394
T ++ +L + + R G + G + + K P
Sbjct: 332 ATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTL 391
Query: 395 IPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFA 428
IP D +GE+ ++ N V KGY P+ AFA
Sbjct: 392 IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFA 425
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 117/311 (37%), Gaps = 61/311 (19%)
Query: 26 LERAATVHPTRKSVVYESKH------YTWQQTYQRCRRLASALS-QLSIGPGTAVSVLSP 78
++R A P +K++++E T+++ + ++A L+ + + G V+V P
Sbjct: 88 VDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMP 147
Query: 79 NVPAMYEVHFGVPMTGAVLNCI--NFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALK 136
VP + GA+ + + F N L I G ++ + D+ + K
Sbjct: 148 MVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVIT-TDE-----SNRGGK 201
Query: 137 IMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRD-EW 195
++E K I D+ P GV +T +P A+ PRD +W
Sbjct: 202 VIETKR-----------IVDDALRETP-------GVRHVLVYRKTNNPSVAFHAPRDLDW 243
Query: 196 QS-------------------IALGYTSGTTANPKGVLVSHRAAYLMS--LNVVLTWGMK 234
+ + L YTSG+T PKGV S A YL+ L + T+
Sbjct: 244 ATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHS-TAGYLLGALLTMRYTFDTH 302
Query: 235 EGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQAS-----AKAIYKAIAEHGVTNFCA 289
+ V+ I G + L G + ++ + + + I EH VT F
Sbjct: 303 QEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYV 362
Query: 290 APIVLNSIVNA 300
AP L + A
Sbjct: 363 APTALRLLKRA 373
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 112/270 (41%), Gaps = 42/270 (15%)
Query: 176 EKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLN--VVLTWGM 233
E+LLE + E ++ + YTSG+T NPKGV +S AA L S + + +
Sbjct: 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQIS--AANLQSFTDWICADFPV 181
Query: 234 KEGAVYLWTLPIFHGNGWCFTWSLAAL-----CGTSVMLRQASA----KAIYKAIAEHGV 284
G ++L P + F S+ L G ++ A K +++ + + G+
Sbjct: 182 SGGKIFLNQAP------FSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGL 235
Query: 285 TNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQK--GFRVTHVYG 342
+ + P + + P L LPH G P + A+ ++ ++ + YG
Sbjct: 236 NVWTSTPSFVQMCLMDPGFSQDL-LPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYG 294
Query: 343 LSEINGPATVCAWNPN----WDSLPFE-AQARLNARQGVKCMCLEGLDVLDTKTNQPIPA 397
+E T + +SLP A+ +N + M EG QP+P
Sbjct: 295 PTEATVAVTSVEITNDVISRSESLPVGFAKPDMN----IFIMDEEG---------QPLPE 341
Query: 398 DGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
K GE+V+ G V +GYL P+ E+AF
Sbjct: 342 GEK--GEIVIAGPSVSRGYLGEPELTEKAF 369
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 92/241 (38%), Gaps = 35/241 (14%)
Query: 199 ALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258
A+ YTSGTT G ++SH SL +V W V + LPI+H +G ++
Sbjct: 159 AILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT 218
Query: 259 ALC-GTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNT 317
G+ + L I +A T P ++ + P T H+ +
Sbjct: 219 LFARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQS-PRLTXETTGHMRLFIS 275
Query: 318 GGSPPPPPILLAMSQK------GFRVTHVYGLSEINGPATVCAWNP-NWDSLPFEAQARL 370
G +P LLA + + G V YG++E N + NP + D +P
Sbjct: 276 GSAP-----LLADTHREWSAXTGHAVLERYGMTETN----MNTSNPYDGDRVP------- 319
Query: 371 NARQGVKCMCLEGLD--VLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFA 428
G L G+ V D +T +P IG + + G V GY + P+ F
Sbjct: 320 ----GAVGPALPGVSARVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFR 373
Query: 429 N 429
+
Sbjct: 374 D 374
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 92/241 (38%), Gaps = 35/241 (14%)
Query: 199 ALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258
A+ YTSGTT G ++SH SL +V W V + LPI+H +G ++
Sbjct: 159 AILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT 218
Query: 259 ALC-GTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNT 317
G+ + L I +A T P ++ + P T H+ +
Sbjct: 219 LFARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQS-PRLTXETTGHMRLFIS 275
Query: 318 GGSPPPPPILLAMSQK------GFRVTHVYGLSEINGPATVCAWNP-NWDSLPFEAQARL 370
G +P LLA + + G V YG++E N + NP + D +P
Sbjct: 276 GSAP-----LLADTHREWSAXTGHAVLERYGMTETN----MNTSNPYDGDRVP------- 319
Query: 371 NARQGVKCMCLEGLD--VLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFA 428
G L G+ V D +T +P IG + + G V GY + P+ F
Sbjct: 320 ----GAVGPALPGVSARVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFR 373
Query: 429 N 429
+
Sbjct: 374 D 374
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 92/241 (38%), Gaps = 35/241 (14%)
Query: 199 ALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258
A+ YTSGTT G ++SH SL +V W V + LPI+H +G ++
Sbjct: 159 AILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT 218
Query: 259 ALC-GTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNT 317
G+ + L I +A T P ++ + P T H+ +
Sbjct: 219 LFARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQS-PRLTXETTGHMRLFIS 275
Query: 318 GGSPPPPPILLAMSQK------GFRVTHVYGLSEINGPATVCAWNP-NWDSLPFEAQARL 370
G +P LLA + + G V YG++E N + NP + D +P
Sbjct: 276 GSAP-----LLADTHREWSAXTGHAVLERYGMTETN----MNTSNPYDGDRVP------- 319
Query: 371 NARQGVKCMCLEGLD--VLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFA 428
G L G+ V D +T +P IG + + G V GY + P+ F
Sbjct: 320 ----GAVGPALPGVSARVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFR 373
Query: 429 N 429
+
Sbjct: 374 D 374
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 84/379 (22%), Positives = 142/379 (37%), Gaps = 44/379 (11%)
Query: 56 RRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGH 115
++LAS +S+ + G V V PN + + A IN + IL
Sbjct: 63 KKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILND 122
Query: 116 AEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEY 175
+EA + V + E K PVL G E + + V
Sbjct: 123 SEATTLVVHSXLY----ENFK------------PVLEKTGVERV------FVVGGEVNSL 160
Query: 176 EKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKE 235
++ ++G +F E + YT GTT PKGV ++H +L + + G+
Sbjct: 161 SEVXDSGSEDFENVKVNPEEDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGLSH 220
Query: 236 GAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLN 295
+ P FH + + V+ + + + + I ++ T A P LN
Sbjct: 221 XDTIVGCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALN 280
Query: 296 SIVNA-PPEDTILPLPHVVNVNTGGSPPPPPI---LLAMSQKG-----FRVTHVYGLSEI 346
+VN + ++ TG P P + LL ++ + R ++G +E
Sbjct: 281 VLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEA 340
Query: 347 NGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVV 406
T NP P + QGV +E L V+ + + + G++ GE+V
Sbjct: 341 CPXVTT---NP-----PLRLDK--STTQGVPXSDIE-LKVISLEDGRELGV-GES-GEIV 387
Query: 407 MRGNMVMKGYLKNPKANEE 425
+RG + KGY K K N+E
Sbjct: 388 IRGPNIFKGYWKREKENQE 406
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 91/236 (38%), Gaps = 44/236 (18%)
Query: 25 FLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMY 84
L A + R ++ + H+++++ R RLA+ +L I V V PN+ +
Sbjct: 30 LLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF 89
Query: 85 EVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEG 144
EV F + FRL L V + H + + + + AE A I+ G
Sbjct: 90 EVIFAL-----------FRLGALPVFALPSHRSSEITY----FCEFAEAAAYIIPDAYSG 134
Query: 145 L----------FKPPVL--IVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPR 192
K P L I++ E + PLE ++ V KL E + A+
Sbjct: 135 FDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPV----KLPEVKSSDVAF---- 186
Query: 193 DEWQSIALGYTSGTTANPKGVLVSHRA-AYLMSLNVVLTWGMKEGAVYLWTLPIFH 247
L + G+T K + +H Y + +V + W + VYL LP+ H
Sbjct: 187 -------LQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCW-LDHSTVYLAALPMAH 234
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 90/236 (38%), Gaps = 44/236 (18%)
Query: 25 FLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMY 84
L A + R ++ + H+++++ R RLA+ +L I V V PN+ +
Sbjct: 30 LLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF 89
Query: 85 EVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEG 144
EV F + FRL L V + H + + + + AE A I+ G
Sbjct: 90 EVIFAL-----------FRLGALPVFALPSHRSSEITY----FCEFAEAAAYIIPDAYSG 134
Query: 145 L----------FKPPVL--IVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPR 192
K P L I++ E + PLE ++ V KL E + A+
Sbjct: 135 FDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPV----KLPEVKSSDVAF---- 186
Query: 193 DEWQSIALGYTSGTTANPKGVLVSHRA-AYLMSLNVVLTWGMKEGAVYLWTLPIFH 247
L + G+T K + +H Y + +V + W + VYL LP H
Sbjct: 187 -------LQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCW-LDHSTVYLAALPXAH 234
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 100/450 (22%), Positives = 164/450 (36%), Gaps = 89/450 (19%)
Query: 12 KNPANFTALTP-LWFLERAATVHPTRKSV------VYESKHYTWQQTYQRCRRLASALSQ 64
K A +T+ P ++E A HP K+V + K T TY++ A+ ++
Sbjct: 11 KVSAQYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVAN 70
Query: 65 LSIGP---GTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALV 121
L I G A++V + + G+ +G I L + +L + AA
Sbjct: 71 LIIHASLHGRAIAVSLDRSLIAFAIIVGIXKSGNTYVPIEAGLPNDRKSFLLRDSRAAXA 130
Query: 122 FVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLET 181
FV F +G+ PP V+ +T +++ +E ++ +T
Sbjct: 131 FVCDNNF--------------DGVELPPETKVL--DTKNQSFIENLSTQ---------DT 165
Query: 182 GDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLW 241
D + D + L YTSG+T PKGV VS S WG G V
Sbjct: 166 SDILNNYPENLDAY----LLYTSGSTGTPKGVRVSRHNLSSFSD----AWGKLIGNVAPK 217
Query: 242 TLPI---------------FHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTN 286
+L + H W LC + R + + + E GVT+
Sbjct: 218 SLELGGVGKFLCLASRAFDVHIGEXFLAWRFG-LCAVTGE-RLSXLDDLPRTFRELGVTH 275
Query: 287 FCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPIL-LAMSQKGFRVTHVYGLSE 345
P +L+ PED PH+V + GG P + S + +VYG +E
Sbjct: 276 AGIVPSLLDQ-TGLVPEDA----PHLVYLGVGGEKXTPRTQQIWSSSDRVALVNVYGPTE 330
Query: 346 INGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTI--- 402
+ + P+ D+ +C+ G + D+ + P + +
Sbjct: 331 VTIGCSAGRILPDSDT---------------RCI---GHPLGDSVAHVLAPGSNEHVKKG 372
Query: 403 --GEVVMRGNMVMKGYLKNPKANEEAFANG 430
GE+V+ G++V GYL P A NG
Sbjct: 373 XAGELVIEGSLVANGYLNRPDAKGFCDING 402
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 82/206 (39%), Gaps = 35/206 (16%)
Query: 14 PANFTALTPL--WFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGT 71
PA PL WF E A +P ++ Y + ++++ + R+A L + G G+
Sbjct: 457 PAQAHETKPLTYWFKE-AVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGS 515
Query: 72 AVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALA 131
V++ + + GV GA ++ +L ++ +L + AA + Q+
Sbjct: 516 VVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQE----- 570
Query: 132 EEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPP 191
M+ ++ L + I D+ T +E+ + DP A P
Sbjct: 571 ------MKEQAAELPYTGTTLFIDDQ---------------TRFEE--QASDPATAIDPN 607
Query: 192 RDEWQSIALGYTSGTTANPKGVLVSH 217
+ + YTSGTT PKG + +H
Sbjct: 608 DPAY----IMYTSGTTGKPKGNITTH 629
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 105/260 (40%), Gaps = 36/260 (13%)
Query: 181 TGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYL 240
T +PE A K ++ + YTSG+T NPKGV +++ + V + ++ G V+L
Sbjct: 134 TPNPEHAVKGD----ENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFL 189
Query: 241 WTLPIFHGNGWCFTWSLAALCGTSVMLRQ---ASAKAIYKAIAEHGVTNFCAAPIVLN-S 296
P + GT + + A K ++ ++ + + + + P
Sbjct: 190 NQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249
Query: 297 IVNAPPEDTILPLPHVVNVNT---GGSPPPPPILLAMSQKGFRVT--HVYGLSE----IN 347
++ A +++LP N+ T G P + + ++ + T + YG +E +
Sbjct: 250 LMEASFSESMLP-----NMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVT 304
Query: 348 GPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVM 407
G + SLP C +L K + I DG+ GE+V+
Sbjct: 305 GIHVTEEVLDQYKSLPV-------------GYCKSDCRLLIMKEDGTIAPDGEK-GEIVI 350
Query: 408 RGNMVMKGYLKNPKANEEAF 427
G V GYL +P+ E+AF
Sbjct: 351 VGPSVSVGYLGSPELTEKAF 370
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 105/260 (40%), Gaps = 36/260 (13%)
Query: 181 TGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYL 240
T +PE A K ++ + YTSG+T NPKGV +++ + V + ++ G V+L
Sbjct: 134 TPNPEHAVKGD----ENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFL 189
Query: 241 WTLPIFHGNGWCFTWSLAALCGTSVMLRQ---ASAKAIYKAIAEHGVTNFCAAPIVLN-S 296
P + GT + + A K ++ ++ + + + + P
Sbjct: 190 NQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249
Query: 297 IVNAPPEDTILPLPHVVNVNT---GGSPPPPPILLAMSQKGFRVT--HVYGLSE----IN 347
++ A +++LP N+ T G P + + ++ + T + YG +E +
Sbjct: 250 LMEASFSESMLP-----NMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVT 304
Query: 348 GPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVM 407
G + SLP C +L K + I DG+ GE+V+
Sbjct: 305 GIHVTEEVLDQYKSLPV-------------GYCKSDCRLLIMKEDGTIAPDGEK-GEIVI 350
Query: 408 RGNMVMKGYLKNPKANEEAF 427
G V GYL +P+ E+AF
Sbjct: 351 VGPSVSVGYLGSPELTEKAF 370
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 25/233 (10%)
Query: 199 ALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258
++ +TSGTT K V + R Y ++ + G +L LPI+H +G
Sbjct: 167 SIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAV 226
Query: 259 ALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPH-VVNVNT 317
T ++ + +A+ I I +T+ P LN ++ L P+ + +
Sbjct: 227 IEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQG-----LHEPYNLQKILL 281
Query: 318 GGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVK 377
GG+ ++ Q + + +G++E C+ L+AR
Sbjct: 282 GGAKLSATMIETALQYNLPIYNSFGMTE------TCS------QFLTATPEMLHARPDTV 329
Query: 378 CMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
M +DV K P + + GE++++G VM GYL P F NG
Sbjct: 330 GMPSANVDV---KIKNP---NKEGHGELMIKGANVMNGYLY-PTDLTGTFENG 375
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 99/252 (39%), Gaps = 56/252 (22%)
Query: 202 YTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAV------YLWTLPIFHGNGWCFTW 255
+TSGTT PKGV +SH L+S W +++ A + P + + W
Sbjct: 152 FTSGTTGQPKGVQISHDN--LLSFT---NWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYW 206
Query: 256 S-LAALCGTSVMLRQ---ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPH 311
+ AL GT L + A K ++ IA+ V + + P + + +P
Sbjct: 207 APTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTP-SFADMAMLSDDFCQAKMPA 265
Query: 312 VVNVNTGGSPPPPPILLAMSQKGF------RVTHVYGLSEINGPATVCAWNPNWDSLPFE 365
+ + G + ++ ++K F ++ + YG P E
Sbjct: 266 LTHFYFDGEE----LTVSTARKLFERFPSAKIINAYG--------------------PTE 301
Query: 366 AQARLNARQGVKCMC--LEGLDVLDTKTNQP---IPADGKTI-----GEVVMRGNMVMKG 415
A L+A + + M L + K + P I DGK + GE+++ G V KG
Sbjct: 302 ATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKG 361
Query: 416 YLKNPKANEEAF 427
YL NP+ EAF
Sbjct: 362 YLNNPEKTAEAF 373
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 200 LGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMK--EGAVYLWTLPIFHGNG 250
L YTSG+T P+GV+++HR +L + G+K G + LP +H G
Sbjct: 180 LQYTSGSTRFPRGVIITHREV-XANLRAISHDGIKLRPGDRCVSWLPFYHDXG 231
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 193 DEWQSIA-LGYTSGTTANPKGVLVSHRAAY-----LMSLNVVLTWGM--KEGAVYLWTLP 244
DE+ S A L YTSG+T P GV++SH+ LMS T G+ A+ W LP
Sbjct: 180 DEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSW-LP 238
Query: 245 IFHGNG 250
+H G
Sbjct: 239 FYHDMG 244
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 98/244 (40%), Gaps = 49/244 (20%)
Query: 202 YTSGTTANPKGVLVSHRAA------YLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTW 255
YTSGTT NPKG ++ H+ + SLNV ++ + + F + W
Sbjct: 189 YTSGTTGNPKGTMLEHKGISNLKVFFENSLNVT-----EKDRIGQFASISFDASVWEMFM 243
Query: 256 SLAALCGTSVMLRQASAKAIY--KAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVV 313
+L ++L+ + + I + +T P +V+ PE IL + ++
Sbjct: 244 ALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPP---TYVVHLDPE-RILSIQTLI 299
Query: 314 NVNTGGSPPPPPILLAMSQKGFRVTHV--YGLSEINGPATVCA--WNPNWD----SLPFE 365
T GS P ++ +K VT++ YG +E T+CA W + S+P
Sbjct: 300 ---TAGSATSPSLVNKWKEK---VTYINAYGPTE----TTICATTWVATKETIGHSVPIG 349
Query: 366 AQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEE 425
A ++ + N + + G+ GE+ + G + +GY K P+ +
Sbjct: 350 A-------------PIQNTQIYIVDENLQLKSVGEA-GELCIGGEGLARGYWKRPELTSQ 395
Query: 426 AFAN 429
F +
Sbjct: 396 KFVD 399
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 93/242 (38%), Gaps = 37/242 (15%)
Query: 202 YTSGTTANPKGVLVSHR--AAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFT----W 255
YTSGTT NPKGV V H A L V + + W L FH + F+ W
Sbjct: 182 YTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDD----RWLL--FHSLSFDFSVWEIW 235
Query: 256 SLAALCGTSVMLRQASAKA---IYKAIAEHGVTNFCAAPIVLNSIVNAPPED--TILPLP 310
+ V+L +A+ I + GVT P ++ A + L
Sbjct: 236 GAFSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLALTEAAVRGGRDVSGLR 295
Query: 311 HVVNVNTGGSPPPPPILLAMSQKGF-----RVTHVYGLSEINGPATVCAWNPNWDSLPFE 365
+V+ GG P+L + K F R+ + YG++E T + +
Sbjct: 296 YVI---FGGEKLTAPMLRPWA-KAFGLDRPRLVNGYGITETTVFTTFEEITEAYLAQDAS 351
Query: 366 AQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEE 425
R G + + +G DV A G+T GE+ + G + +GYL+ P+ E
Sbjct: 352 IIGRALPSFGTRVVGDDGRDV----------APGET-GELWLSGAQLAEGYLRRPELTAE 400
Query: 426 AF 427
F
Sbjct: 401 KF 402
>pdb|1LLA|A Chain A, Crystal Structure Of Deoxygenated Limulus Polyphemus
Subunit Ii Hemocyanin At 2.18 Angstroms Resolution:
Clues For A Mechanism For Allosteric Regulation
pdb|1NOL|A Chain A, Oxygenated Hemocyanin (Subunit Type Ii)
Length = 628
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 116 AEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKG 171
A+ A FV++ FA A E + +GL+ PPV + D+ A + A K
Sbjct: 77 AKEARTFVNEGLFAFAAEVAVLHRDDCKGLYVPPVQEIFPDKFIPSAAINEAFKKA 132
>pdb|1LL1|A Chain A, Hydroxo Bridge Met Form Hemocyanin From Limulus
Length = 628
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 116 AEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKG 171
A+ A FV++ FA A E + +GL+ PPV + D+ A + A K
Sbjct: 77 AKEARTFVNEGLFAFAAEVAVLHRDDCKGLYVPPVQEIFPDKFIPSAAINEAFKKA 132
>pdb|1OXY|A Chain A, Crystallographic Analysis Of Oxygenated And Deoxygenated
States Of Arthropod Hemocyanin Shows Unusual Differences
Length = 628
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 116 AEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKG 171
A+ A FV++ FA A E + +GL+ PPV + D+ A + A K
Sbjct: 77 AKEARTFVNEGLFAFAAEVAVLHRDDCKGLYVPPVQEIFPDKFIPSAAINEAFKKA 132
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 26 LERAATV----HPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVP 81
L R TV HP +++ + ++ + + LA+ L++ +G G V PNV
Sbjct: 32 LTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVA 91
Query: 82 AMYEVHFGVPMTGAVL 97
Y V F + G V+
Sbjct: 92 EFYIVFFALLKAGVVV 107
>pdb|4AB5|A Chain A, Regulatory Domain Structure Of Nmb2055 (Metr) A Lysr
Family Regulator From N. Meningitidis
pdb|4AB5|B Chain B, Regulatory Domain Structure Of Nmb2055 (Metr) A Lysr
Family Regulator From N. Meningitidis
Length = 222
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 186 FAWKPP-----RDEWQSIALGYTSGTTANPKGVLVSHRA 219
F W P R W + L SG A+P G+L+ HRA
Sbjct: 20 FDWLXPAXGEFRPXWPQVELDIVSGFQADPVGLLLQHRA 58
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 22/159 (13%)
Query: 155 GDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRD---EWQSIALGY-TSGTTANP 210
GD +A + + +G ++ K LE P F +P + + + I L Y +SGT P
Sbjct: 182 GDIPLKKAKVGGDVLEGWIDFRKELEESSPIFE-RPTGEVSTKNEDICLVYFSSGTAGFP 240
Query: 211 KGVLVSHRAAYLMSLNVVLT---WGMKEGAVYLWTLPIFHGNGW--CFTWSLAA--LCGT 263
K +V H Y L +LT W E +T+ +GW C L + G
Sbjct: 241 K--MVEHDNTY--PLGHILTAKYWQNVEDDGLHYTVA---DSGWGKCVWGKLYGQWIAGC 293
Query: 264 SVML---RQASAKAIYKAIAEHGVTNFCAAPIVLNSIVN 299
+V + + AK + + +++GVT FCA P + ++
Sbjct: 294 AVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIK 332
>pdb|4AB6|A Chain A, Regulatory Domain Structure Of Nmb2055 (Metr), C103s C106s
Mutant, A Lysr Family Regulator From N. Meningitidis
pdb|4AB6|B Chain B, Regulatory Domain Structure Of Nmb2055 (Metr), C103s C106s
Mutant, A Lysr Family Regulator From N. Meningitidis
Length = 222
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 33/142 (23%)
Query: 186 FAWKPP-----RDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYL 240
F W P R W + L SG A+P G+L+ HRA +++ K+ +
Sbjct: 20 FDWLMPAMGEFRPMWPQVELDIVSGFQADPVGLLLQHRADL-----AIVSEAEKQNGISF 74
Query: 241 WTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNA 300
L F + + +C L +AK ++ A +F +++
Sbjct: 75 QPL---------FAYEMVGICAPDHPL---AAKNVWTA------EDFIG-----ETLITY 111
Query: 301 PPEDTILPLPHVVNVNTGGSPP 322
P D +L LP + + +PP
Sbjct: 112 PVPDEMLDLPKKILIPKNINPP 133
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 193 DEWQSIA-LGYTSGTTANPKGVLVSHR 218
DE+ S A L YTSG+T P GV+ SH+
Sbjct: 180 DEYPSTAYLQYTSGSTRTPAGVVXSHQ 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,665,686
Number of Sequences: 62578
Number of extensions: 568189
Number of successful extensions: 1323
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1207
Number of HSP's gapped (non-prelim): 90
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)