Query 048242
Match_columns 430
No_of_seqs 140 out of 1249
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 13:13:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rix_A Luciferase, luciferin 4 100.0 4.4E-61 1.5E-65 477.8 37.8 399 1-430 1-416 (550)
2 1v25_A Long-chain-fatty-acid-C 100.0 5.8E-61 2E-65 475.8 38.2 390 17-430 15-412 (541)
3 3g7s_A Long-chain-fatty-acid-- 100.0 5.4E-60 1.8E-64 469.9 38.4 378 14-427 13-408 (549)
4 3ni2_A 4-coumarate:COA ligase; 100.0 8.7E-60 3E-64 467.1 39.7 381 19-430 21-411 (536)
5 3o83_A Peptide arylation enzym 100.0 2.8E-59 9.5E-64 464.1 37.5 380 17-430 27-416 (544)
6 3r44_A Fatty acyl COA syntheta 100.0 2E-59 6.7E-64 462.3 34.3 378 15-430 11-390 (517)
7 1mdb_A 2,3-dihydroxybenzoate-A 100.0 6.2E-59 2.1E-63 461.1 37.9 377 17-430 22-407 (539)
8 3ivr_A Putative long-chain-fat 100.0 7.1E-59 2.4E-63 458.1 37.2 372 16-430 2-375 (509)
9 2d1s_A Luciferase, luciferin 4 100.0 6.1E-58 2.1E-62 454.6 40.2 378 20-430 25-418 (548)
10 3etc_A AMP-binding protein; ad 100.0 1.9E-57 6.6E-62 453.2 40.9 377 20-430 55-452 (580)
11 4fuq_A Malonyl COA synthetase; 100.0 6.3E-58 2.2E-62 450.1 36.7 365 24-428 4-373 (503)
12 3t5a_A Long-chain-fatty-acid-- 100.0 9E-59 3.1E-63 454.6 29.8 387 8-428 12-446 (480)
13 3fce_A D-alanine--poly(phospho 100.0 1.7E-57 6E-62 448.5 36.1 364 20-427 1-370 (512)
14 2v7b_A Benzoate-coenzyme A lig 100.0 3.4E-57 1.2E-61 448.2 38.0 379 19-430 23-406 (529)
15 3e7w_A D-alanine--poly(phospho 100.0 1.4E-57 4.6E-62 449.0 34.2 363 20-427 1-369 (511)
16 1amu_A GRSA, gramicidin synthe 100.0 4.9E-57 1.7E-61 449.0 38.4 358 19-428 38-398 (563)
17 4dg8_A PA1221; ANL superfamily 100.0 2.5E-57 8.6E-62 454.9 35.4 359 16-428 23-386 (620)
18 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.4E-56 4.8E-61 441.0 38.3 360 20-430 2-379 (504)
19 4gr5_A Non-ribosomal peptide s 100.0 2.9E-57 1E-61 452.1 33.5 359 18-428 73-435 (570)
20 3c5e_A Acyl-coenzyme A synthet 100.0 1.8E-56 6.3E-61 445.5 38.9 375 20-430 38-433 (570)
21 3rg2_A Enterobactin synthase c 100.0 2.1E-56 7.2E-61 449.8 39.0 375 16-428 23-408 (617)
22 3l8c_A D-alanine--poly(phospho 100.0 5.6E-56 1.9E-60 438.8 37.7 365 18-427 2-373 (521)
23 3tsy_A Fusion protein 4-coumar 100.0 2.8E-56 9.6E-61 471.1 36.9 387 19-430 60-458 (979)
24 1pg4_A Acetyl-COA synthetase; 100.0 4.9E-56 1.7E-60 449.0 36.3 384 20-427 76-488 (652)
25 1ry2_A Acetyl-coenzyme A synth 100.0 2.7E-55 9.3E-60 443.8 39.1 385 20-427 82-497 (663)
26 3ipl_A 2-succinylbenzoate--COA 100.0 2.9E-55 9.9E-60 431.6 32.0 368 20-430 1-375 (501)
27 3kxw_A Saframycin MX1 syntheta 100.0 1.7E-55 5.8E-60 442.1 30.2 380 17-429 8-426 (590)
28 3ite_A SIDN siderophore synthe 100.0 3E-54 1E-58 430.2 30.9 369 14-430 14-402 (562)
29 3gqw_A Fatty acid AMP ligase; 100.0 3.3E-53 1.1E-57 424.5 34.9 380 16-430 17-439 (576)
30 2vsq_A Surfactin synthetase su 100.0 1.1E-53 3.7E-58 462.1 30.2 371 9-427 453-828 (1304)
31 3nyq_A Malonyl-COA ligase; A/B 100.0 2.1E-54 7.3E-59 425.0 18.5 355 18-430 20-382 (505)
32 3hgu_A EHPF; phenazine, antibi 100.0 1.1E-31 3.6E-36 253.4 14.0 216 192-428 88-342 (369)
33 4gs5_A Acyl-COA synthetase (AM 100.0 6E-31 2E-35 246.3 13.1 196 194-418 36-231 (358)
34 3qov_A Phenylacetate-coenzyme 100.0 3.3E-29 1.1E-33 241.6 17.6 204 191-410 81-291 (436)
35 2y27_A Phenylacetate-coenzyme 100.0 4.8E-29 1.6E-33 240.6 18.5 204 191-410 86-296 (437)
36 2y4o_A Phenylacetate-coenzyme 100.0 8.9E-29 3E-33 239.2 17.7 204 191-410 88-298 (443)
37 2y27_A Phenylacetate-coenzyme 93.5 0.55 1.9E-05 44.2 11.4 90 44-134 108-199 (437)
38 2y4o_A Phenylacetate-coenzyme 93.2 0.68 2.3E-05 43.7 11.4 90 44-134 110-201 (443)
39 3qov_A Phenylacetate-coenzyme 93.1 0.7 2.4E-05 43.5 11.3 91 44-135 104-196 (436)
40 3hgu_A EHPF; phenazine, antibi 84.8 3.3 0.00011 37.7 8.7 86 44-131 109-219 (369)
41 3ipl_A 2-succinylbenzoate--COA 84.8 8.9 0.0003 36.5 12.0 97 33-133 161-267 (501)
42 3kxw_A Saframycin MX1 syntheta 84.0 7.4 0.00025 37.9 11.3 97 33-132 165-275 (590)
43 1mdb_A 2,3-dihydroxybenzoate-A 82.6 14 0.00049 35.5 12.6 98 33-134 180-289 (539)
44 2d1s_A Luciferase, luciferin 4 82.3 6.5 0.00022 38.0 10.0 96 35-132 192-298 (548)
45 3ivr_A Putative long-chain-fat 81.7 13 0.00043 35.5 11.8 94 193-296 19-116 (509)
46 3o83_A Peptide arylation enzym 81.5 13 0.00045 35.8 11.8 96 34-133 190-297 (544)
47 3r44_A Fatty acyl COA syntheta 80.2 13 0.00043 35.7 11.2 85 44-133 188-274 (517)
48 1v25_A Long-chain-fatty-acid-C 79.9 22 0.00076 34.1 12.9 85 212-297 45-133 (541)
49 3rix_A Luciferase, luciferin 4 79.9 11 0.00037 36.5 10.6 85 213-298 49-137 (550)
50 3tbh_A O-acetyl serine sulfhyd 79.0 19 0.00064 32.3 11.2 66 61-126 61-127 (334)
51 3fce_A D-alanine--poly(phospho 77.2 10 0.00035 36.2 9.4 84 44-130 162-248 (512)
52 3g7s_A Long-chain-fatty-acid-- 76.4 28 0.00096 33.5 12.4 103 193-297 32-138 (549)
53 4gs5_A Acyl-COA synthetase (AM 76.2 14 0.00046 33.5 9.5 93 33-131 35-137 (358)
54 3ni2_A 4-coumarate:COA ligase; 76.0 20 0.00069 34.4 11.3 96 193-296 35-134 (536)
55 3c5e_A Acyl-coenzyme A synthet 74.9 36 0.0012 33.0 12.7 101 193-298 56-161 (570)
56 3e7w_A D-alanine--poly(phospho 73.5 13 0.00046 35.4 9.2 85 44-131 161-248 (511)
57 3rg2_A Enterobactin synthase c 73.0 42 0.0014 32.8 12.9 97 34-134 183-291 (617)
58 3t5a_A Long-chain-fatty-acid-- 72.1 41 0.0014 31.4 12.3 105 193-299 37-148 (480)
59 3vc3_A Beta-cyanoalnine syntha 72.0 38 0.0013 30.4 11.3 71 56-126 72-142 (344)
60 1t5h_X 4-chlorobenzoyl COA lig 71.6 43 0.0015 31.7 12.3 84 213-297 28-117 (504)
61 3ezx_A MMCP 1, monomethylamine 70.8 24 0.00082 29.3 9.0 89 238-330 95-195 (215)
62 1amu_A GRSA, gramicidin synthe 70.5 40 0.0014 32.5 11.9 84 213-297 63-150 (563)
63 1ry2_A Acetyl-coenzyme A synth 70.4 44 0.0015 33.1 12.4 96 193-292 95-195 (663)
64 1pg4_A Acetyl-COA synthetase; 70.4 43 0.0015 33.1 12.3 94 194-291 90-187 (652)
65 3gqw_A Fatty acid AMP ligase; 68.3 33 0.0011 33.1 10.9 97 34-132 175-285 (576)
66 3etc_A AMP-binding protein; ad 66.8 47 0.0016 32.2 11.6 94 193-291 69-166 (580)
67 2v7b_A Benzoate-coenzyme A lig 66.5 29 0.001 33.1 10.0 83 213-296 47-133 (529)
68 3nyq_A Malonyl-COA ligase; A/B 64.2 47 0.0016 31.5 10.8 95 33-132 153-258 (505)
69 3tsy_A Fusion protein 4-coumar 63.1 27 0.00092 36.5 9.5 94 193-294 74-171 (979)
70 4gr5_A Non-ribosomal peptide s 61.4 65 0.0022 31.1 11.4 91 193-293 88-182 (570)
71 1z7w_A Cysteine synthase; tran 61.2 82 0.0028 27.8 11.2 65 62-126 57-122 (322)
72 4fuq_A Malonyl COA synthetase; 59.8 44 0.0015 31.7 9.7 79 214-293 28-110 (503)
73 2q3b_A Cysteine synthase A; py 59.5 91 0.0031 27.3 11.3 64 62-126 58-122 (313)
74 4aec_A Cysteine synthase, mito 59.0 88 0.003 29.0 11.1 63 63-125 166-229 (430)
75 2egu_A Cysteine synthase; O-ac 57.4 98 0.0033 27.0 11.1 64 62-126 56-120 (308)
76 4dg8_A PA1221; ANL superfamily 55.1 42 0.0014 33.0 8.8 96 33-132 162-268 (620)
77 4eez_A Alcohol dehydrogenase 1 53.7 40 0.0014 30.1 7.9 79 44-125 135-216 (348)
78 3l6b_A Serine racemase; pyrido 50.9 50 0.0017 29.6 7.9 55 74-128 79-133 (346)
79 3l8c_A D-alanine--poly(phospho 48.5 69 0.0024 30.4 9.1 78 213-291 28-109 (521)
80 3ite_A SIDN siderophore synthe 47.5 53 0.0018 31.6 8.2 86 44-129 193-284 (562)
81 3dwg_A Cysteine synthase B; su 47.2 1.5E+02 0.0051 26.1 10.9 64 62-126 64-128 (325)
82 4b2g_A GH3-1 auxin conjugating 44.4 5.3 0.00018 39.0 0.3 31 192-222 96-127 (609)
83 1y7l_A O-acetylserine sulfhydr 43.7 1.7E+02 0.0056 25.6 11.2 64 62-126 53-117 (316)
84 2pqm_A Cysteine synthase; OASS 43.6 1.8E+02 0.006 25.9 10.6 64 62-126 69-133 (343)
85 3jv7_A ADH-A; dehydrogenase, n 42.7 1.5E+02 0.005 26.2 9.9 78 46-126 143-225 (345)
86 3s2e_A Zinc-containing alcohol 42.1 85 0.0029 27.8 8.1 78 44-125 138-218 (340)
87 1o58_A O-acetylserine sulfhydr 41.3 1.8E+02 0.0061 25.3 10.8 62 62-126 58-120 (303)
88 4h27_A L-serine dehydratase/L- 38.5 86 0.0029 28.3 7.5 57 73-129 95-151 (364)
89 3tqh_A Quinone oxidoreductase; 37.8 91 0.0031 27.3 7.5 77 44-125 124-204 (321)
90 3two_A Mannitol dehydrogenase; 37.8 96 0.0033 27.5 7.8 75 44-122 148-225 (348)
91 4d9i_A Diaminopropionate ammon 37.3 2.4E+02 0.0082 25.6 10.9 58 73-130 114-171 (398)
92 3ist_A Glutamate racemase; str 36.9 92 0.0031 26.7 7.0 56 24-83 19-80 (269)
93 1h2b_A Alcohol dehydrogenase; 36.6 2.3E+02 0.0078 25.2 11.2 80 44-126 153-240 (359)
94 1zsy_A Mitochondrial 2-enoyl t 36.6 1.1E+02 0.0038 27.3 8.0 80 44-124 138-223 (357)
95 4epl_A Jasmonic acid-amido syn 35.8 15 0.0005 35.7 1.9 31 192-222 95-126 (581)
96 3fpc_A NADP-dependent alcohol 35.2 97 0.0033 27.6 7.4 78 44-125 138-219 (352)
97 2v03_A Cysteine synthase B; py 34.5 2.3E+02 0.0078 24.5 11.1 64 62-126 52-116 (303)
98 3ijw_A Aminoglycoside N3-acety 34.4 67 0.0023 27.6 5.6 24 56-79 18-41 (268)
99 2rkb_A Serine dehydratase-like 34.3 1.2E+02 0.004 26.6 7.6 56 74-129 57-112 (318)
100 4eql_A 4-substituted benzoates 34.2 17 0.00059 35.3 2.2 31 192-222 90-121 (581)
101 1uuf_A YAHK, zinc-type alcohol 34.1 1.1E+02 0.0037 27.6 7.5 78 44-125 165-246 (369)
102 3ss7_X D-serine dehydratase; t 33.8 2.9E+02 0.0099 25.6 12.0 65 72-136 161-225 (442)
103 1ve1_A O-acetylserine sulfhydr 33.3 2.4E+02 0.0081 24.4 11.1 65 62-126 51-117 (304)
104 2cf5_A Atccad5, CAD, cinnamyl 33.3 1.1E+02 0.0039 27.2 7.5 80 44-126 151-234 (357)
105 2jtq_A Phage shock protein E; 33.1 97 0.0033 20.6 5.5 46 44-96 22-67 (85)
106 3ju7_A Putative PLP-dependent 32.6 1.1E+02 0.0038 27.5 7.3 56 65-123 73-135 (377)
107 3dzz_A Putative pyridoxal 5'-p 32.6 2.6E+02 0.0089 24.7 10.3 55 67-124 106-167 (391)
108 4h1h_A LMO1638 protein; MCCF-l 31.7 1.1E+02 0.0038 27.1 6.9 60 66-125 8-86 (327)
109 1y80_A Predicted cobalamin bin 31.5 1.8E+02 0.0061 23.6 7.8 87 238-327 91-186 (210)
110 4ej6_A Putative zinc-binding d 31.3 1.2E+02 0.004 27.3 7.2 60 61-124 174-234 (370)
111 1p5j_A L-serine dehydratase; l 31.2 1.4E+02 0.0046 27.1 7.6 57 73-129 95-151 (372)
112 3aey_A Threonine synthase; PLP 31.1 1.4E+02 0.0046 26.7 7.6 57 73-129 79-136 (351)
113 2jwk_A Protein TOLR; periplasm 30.8 87 0.003 20.2 4.8 28 26-53 36-63 (74)
114 1pl8_A Human sorbitol dehydrog 30.6 1.3E+02 0.0046 26.7 7.5 77 44-125 144-224 (356)
115 2zsj_A Threonine synthase; PLP 30.1 1.5E+02 0.0052 26.4 7.7 57 73-129 81-138 (352)
116 1eg5_A Aminotransferase; PLP-d 29.8 1.9E+02 0.0066 25.4 8.6 16 324-339 305-320 (384)
117 1yqd_A Sinapyl alcohol dehydro 29.2 2E+02 0.0068 25.7 8.4 62 61-125 178-240 (366)
118 2d1f_A Threonine synthase; ami 29.0 1.7E+02 0.0057 26.3 7.8 57 73-129 87-144 (360)
119 4a2c_A Galactitol-1-phosphate 28.1 2.2E+02 0.0074 25.0 8.4 63 60-126 151-214 (346)
120 2nyg_A YOKD protein; PFAM02522 27.7 1E+02 0.0035 26.5 5.7 23 56-78 16-38 (273)
121 1gu7_A Enoyl-[acyl-carrier-pro 26.9 1.5E+02 0.0051 26.4 7.1 80 45-125 138-224 (364)
122 3tla_A MCCF; serine protease, 26.9 1.5E+02 0.005 26.9 6.9 60 66-125 39-117 (371)
123 1kol_A Formaldehyde dehydrogen 26.8 1.8E+02 0.0063 26.2 7.8 56 62-121 178-234 (398)
124 3ri6_A O-acetylhomoserine sulf 26.7 2.2E+02 0.0076 26.2 8.4 58 74-131 100-160 (430)
125 3krt_A Crotonyl COA reductase; 26.7 1.9E+02 0.0067 26.7 8.1 77 44-124 197-280 (456)
126 2duw_A Putative COA-binding pr 26.6 1.1E+02 0.0038 23.2 5.3 9 34-42 13-21 (145)
127 1e3j_A NADP(H)-dependent ketos 26.6 1.8E+02 0.006 25.8 7.5 76 44-124 141-219 (352)
128 3goh_A Alcohol dehydrogenase, 26.5 1.7E+02 0.0059 25.3 7.4 74 44-122 114-190 (315)
129 1o69_A Aminotransferase; struc 26.5 2.5E+02 0.0084 25.2 8.7 56 66-124 68-129 (394)
130 3pc3_A CG1753, isoform A; CBS, 26.2 2.6E+02 0.0089 26.6 9.0 62 63-125 105-167 (527)
131 3b8x_A WBDK, pyridoxamine 5-ph 26.1 3.5E+02 0.012 24.0 10.0 55 66-124 76-135 (390)
132 3mfq_A TROA, high-affinity zin 26.1 1.4E+02 0.0048 25.7 6.5 84 48-133 138-228 (282)
133 1p0f_A NADP-dependent alcohol 26.1 2E+02 0.007 25.6 7.9 58 64-125 186-244 (373)
134 4b7c_A Probable oxidoreductase 26.0 2.1E+02 0.0073 25.0 7.9 59 63-124 143-202 (336)
135 3uog_A Alcohol dehydrogenase; 26.0 3.4E+02 0.012 24.0 9.4 76 44-123 160-239 (363)
136 1rjw_A ADH-HT, alcohol dehydro 25.7 2.1E+02 0.007 25.2 7.8 76 44-123 136-214 (339)
137 3d1p_A Putative thiosulfate su 25.7 1.1E+02 0.0038 22.7 5.2 80 16-96 21-117 (139)
138 1y81_A Conserved hypothetical 25.7 1.3E+02 0.0045 22.5 5.5 48 71-119 71-118 (138)
139 3sr3_A Microcin immunity prote 25.3 1.8E+02 0.0062 25.8 7.1 60 66-125 9-87 (336)
140 3gi1_A LBP, laminin-binding pr 24.9 2.5E+02 0.0085 24.2 7.9 84 48-135 156-246 (286)
141 3hh8_A Metal ABC transporter s 24.9 1.8E+02 0.0061 25.2 7.0 83 48-132 158-247 (294)
142 1y80_A Predicted cobalamin bin 24.7 2.1E+02 0.0071 23.2 7.0 54 72-125 90-147 (210)
143 3op7_A Aminotransferase class 24.5 3.1E+02 0.011 24.1 8.9 54 67-124 102-161 (375)
144 3uhf_A Glutamate racemase; str 24.4 1.4E+02 0.0047 25.7 6.0 56 24-83 38-99 (274)
145 2h6e_A ADH-4, D-arabinose 1-de 24.1 1.8E+02 0.0062 25.6 7.1 54 66-123 168-222 (344)
146 2i2x_B MTAC, methyltransferase 24.1 2.4E+02 0.0082 23.8 7.5 90 234-328 122-220 (258)
147 3ujp_A Mn transporter subunit; 24.0 1.4E+02 0.0046 26.2 6.0 81 48-130 165-252 (307)
148 1j0a_A 1-aminocyclopropane-1-c 24.0 3.6E+02 0.012 23.5 9.3 57 71-127 71-129 (325)
149 4e5s_A MCCFLIKE protein (BA_56 23.9 1.9E+02 0.0064 25.7 6.9 60 66-125 8-86 (331)
150 1mdo_A ARNB aminotransferase; 23.8 2.1E+02 0.0073 25.4 7.7 18 324-341 313-330 (393)
151 1wxi_A NH(3)-dependent NAD(+) 23.6 3.3E+02 0.011 23.2 8.3 78 45-125 16-111 (275)
152 1toa_A Tromp-1, protein (perip 23.6 1.5E+02 0.0053 25.9 6.3 84 49-134 173-263 (313)
153 4dq6_A Putative pyridoxal phos 23.5 3.8E+02 0.013 23.6 9.7 51 68-123 112-170 (391)
154 4dup_A Quinone oxidoreductase; 23.5 2.8E+02 0.0095 24.5 8.2 78 44-125 138-220 (353)
155 2dph_A Formaldehyde dismutase; 23.4 2.3E+02 0.008 25.6 7.8 55 61-119 177-232 (398)
156 1jbq_A B, cystathionine beta-s 23.4 3.4E+02 0.012 25.1 8.8 61 64-125 154-215 (435)
157 1e3i_A Alcohol dehydrogenase, 23.0 2.4E+02 0.0081 25.2 7.8 78 44-125 166-248 (376)
158 3sma_A FRBF; N-acetyl transfer 22.9 60 0.0021 28.1 3.3 28 44-78 20-47 (286)
159 1xvl_A Mn transporter, MNTC pr 22.9 1.5E+02 0.0052 26.1 6.1 84 49-134 180-270 (321)
160 1ofu_X SULA, hypothetical prot 22.8 2.3E+02 0.0077 20.7 6.6 42 59-100 47-88 (119)
161 3uko_A Alcohol dehydrogenase c 22.8 2.1E+02 0.0072 25.6 7.4 78 44-125 164-246 (378)
162 1f8f_A Benzyl alcohol dehydrog 22.7 2.7E+02 0.0092 24.8 8.1 58 64-125 185-243 (371)
163 2yxb_A Coenzyme B12-dependent 22.7 2.7E+02 0.0091 21.5 8.6 112 219-335 2-122 (161)
164 1piw_A Hypothetical zinc-type 22.3 2.1E+02 0.0071 25.4 7.2 78 44-125 151-231 (360)
165 2d59_A Hypothetical protein PH 22.3 1.4E+02 0.0049 22.5 5.2 10 34-43 22-31 (144)
166 3a2k_A TRNA(Ile)-lysidine synt 22.2 3.3E+02 0.011 25.3 8.7 69 57-125 4-86 (464)
167 1c7n_A Cystalysin; transferase 21.9 4E+02 0.014 23.6 9.2 25 205-229 241-266 (399)
168 2cvh_A DNA repair and recombin 21.8 1.8E+02 0.0062 23.2 6.2 50 66-116 16-69 (220)
169 1jvb_A NAD(H)-dependent alcoho 21.6 2.9E+02 0.01 24.3 8.0 78 44-124 142-223 (347)
170 3a2b_A Serine palmitoyltransfe 21.5 4E+02 0.014 23.6 9.1 54 67-124 124-180 (398)
171 3acd_A Hypoxanthine-guanine ph 21.3 1.5E+02 0.0053 23.5 5.3 44 44-88 12-55 (181)
172 3ip1_A Alcohol dehydrogenase, 21.2 1.9E+02 0.0066 26.2 6.8 56 66-125 210-266 (404)
173 3gms_A Putative NADPH:quinone 21.1 2.6E+02 0.009 24.5 7.5 78 44-125 115-197 (340)
174 2e7j_A SEP-tRNA:Cys-tRNA synth 21.1 3.7E+02 0.012 23.4 8.6 53 68-123 91-153 (371)
175 3ht4_A Aluminum resistance pro 21.0 3.9E+02 0.013 24.5 8.9 58 67-125 104-173 (431)
176 2vsq_A Surfactin synthetase su 21.0 3.8E+02 0.013 28.9 9.9 79 214-293 489-571 (1304)
177 2o1e_A YCDH; alpha-beta protei 20.9 2.3E+02 0.0078 24.8 6.9 62 72-135 191-257 (312)
178 1cdo_A Alcohol dehydrogenase; 20.9 3E+02 0.01 24.5 8.0 78 44-125 163-245 (374)
179 4eb5_A Probable cysteine desul 20.9 1.6E+02 0.0055 26.0 6.2 16 324-339 302-317 (382)
180 1vj0_A Alcohol dehydrogenase, 20.5 3.7E+02 0.013 24.0 8.5 78 44-125 166-248 (380)
181 2jhf_A Alcohol dehydrogenase E 20.4 2.9E+02 0.0099 24.6 7.7 78 44-125 162-244 (374)
182 3isl_A Purine catabolism prote 20.4 3.1E+02 0.01 24.5 8.1 68 55-124 72-143 (416)
183 2e18_A NH(3)-dependent NAD(+) 20.2 1.8E+02 0.0063 24.4 6.0 70 54-126 9-84 (257)
184 4a0s_A Octenoyl-COA reductase/ 20.2 2.7E+02 0.0092 25.6 7.7 77 44-124 189-272 (447)
185 1v71_A Serine racemase, hypoth 20.2 2.5E+02 0.0084 24.6 7.0 53 75-127 78-130 (323)
186 4dvj_A Putative zinc-dependent 20.2 3E+02 0.01 24.5 7.7 80 44-126 137-226 (363)
187 3qwb_A Probable quinone oxidor 20.1 4.3E+02 0.015 22.9 9.5 56 66-125 145-201 (334)
188 2fzw_A Alcohol dehydrogenase c 20.0 2.6E+02 0.0091 24.8 7.4 78 44-125 161-243 (373)
189 3iau_A Threonine deaminase; py 20.0 3E+02 0.01 24.6 7.7 55 75-129 112-166 (366)
No 1
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=4.4e-61 Score=477.84 Aligned_cols=399 Identities=18% Similarity=0.230 Sum_probs=333.7
Q ss_pred CCCCCCCCcCCCCCCCCCCCCHHHHHHHHHhhCCCcceEE---E--CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEE
Q 048242 1 MEPQNDIDDLPKNPANFTALTPLWFLERAATVHPTRKSVV---Y--ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSV 75 (430)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~a~~---~--~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 75 (430)
||+...+..........+..|+.++|.+.++++|+++|++ + .++++||+||.++++++|+.|.++|+++||+|++
T Consensus 1 ~e~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 80 (550)
T 3rix_A 1 MEDAKNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVV 80 (550)
T ss_dssp --CGGGSEECCCCSSCCCCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred CCcccceeeCCCCCCCcccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 5666666666677778888999999999999999999976 3 3589999999999999999999999999999999
Q ss_pred EcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEec
Q 048242 76 LSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIG 155 (430)
Q Consensus 76 ~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 155 (430)
+++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++.+....+.......+ ....++.++
T Consensus 81 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 153 (550)
T 3rix_A 81 CSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLP-------IIQKIIIMD 153 (550)
T ss_dssp ECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCT-------TCCEEEETT
T ss_pred EcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCC-------CcceEEEEc
Confidence 9999999999999999999999999999999999999999999999999988887777665554 456666665
Q ss_pred CCCCCCCcccccccCCccchhhhhhcCCCC------CCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh
Q 048242 156 DETCDRAPLEYALSKGVTEYEKLLETGDPE------FAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL 229 (430)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~ 229 (430)
.... ..+...+.+++...... ........++++++|+|||||||.||||+++|+++...+.+...
T Consensus 154 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~ 224 (550)
T 3rix_A 154 SKTD---------YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARD 224 (550)
T ss_dssp CSSC---------BTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTC
T ss_pred CCcc---------ccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhh
Confidence 4321 12334555554432221 11112234578999999999999999999999999888777665
Q ss_pred h---cCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCC
Q 048242 230 T---WGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTI 306 (430)
Q Consensus 230 ~---~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~ 306 (430)
. +++..++++++.+|++|.+++...+.+++.|+++++.+.+++..+++.|+++++|+++++|+++..+.+.......
T Consensus 225 ~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 304 (550)
T 3rix_A 225 PIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKY 304 (550)
T ss_dssp TTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGS
T ss_pred hhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcccccc
Confidence 5 4678899999999999999999888899999999999999999999999999999999999999999998766666
Q ss_pred CCCCceeEEeecCCCCCHHHHHHHH-hcCcE-EEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccce
Q 048242 307 LPLPHVVNVNTGGSPPPPPILLAMS-QKGFR-VTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGL 384 (430)
Q Consensus 307 ~~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~-v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ 384 (430)
+ +++||.+++||+++++++.++++ .++.. +++.||+||+++.++.+...+ ...+++|+|++++ ++
T Consensus 305 ~-l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-----------~~~~~vG~~~~~~-~~ 371 (550)
T 3rix_A 305 D-LSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD-----------DKPGAVGKVVPFF-EA 371 (550)
T ss_dssp C-CTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTC-----------CCTTEEEEECTTC-EE
T ss_pred C-cccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCC-----------CCCCCcccccCCc-EE
Confidence 6 89999999999999999999998 56765 899999999987776654321 2447899999999 99
Q ss_pred EEeeCCCCCCCCCCCCceeEEEEecCcccccccCCcccchHhh-hCC
Q 048242 385 DVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF-ANG 430 (430)
Q Consensus 385 ~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f-~dg 430 (430)
+|+|++++++++.| +.|||+|+|++++.|||++|++|++.| .||
T Consensus 372 ~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g 416 (550)
T 3rix_A 372 KVVDLDTGKTLGVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDG 416 (550)
T ss_dssp EEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTS
T ss_pred EEEeCCCCcCCCCC--CCeEEEEeCCCcchhhcCChhhhhhhcCCCC
Confidence 99998879999998 899999999999999999999999998 454
No 2
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=5.8e-61 Score=475.83 Aligned_cols=390 Identities=30% Similarity=0.448 Sum_probs=322.3
Q ss_pred CCCCCHHHHHHHHHhhCCCcceEEE----CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhh
Q 048242 17 FTALTPLWFLERAATVHPTRKSVVY----ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPM 92 (430)
Q Consensus 17 ~~~~t~~~~l~~~~~~~p~~~a~~~----~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 92 (430)
..+.++.++|++.++.+|+++|+++ .++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||++
T Consensus 15 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 94 (541)
T 1v25_A 15 DEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPG 94 (541)
T ss_dssp CCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHh
Confidence 3457899999999999999999994 458999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCc
Q 048242 93 TGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGV 172 (430)
Q Consensus 93 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (430)
+|++++|++|.++.+++.++++.++++++|++.+....+.......+ ....++.+++... .+.
T Consensus 95 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~----------~~~ 157 (541)
T 1v25_A 95 MGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK-------TVQHFVVMDEKAP----------EGY 157 (541)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCS-------SCCEEEESSSCCC----------TTC
T ss_pred cCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCC-------CccEEEEecCCCC----------ccc
Confidence 99999999999999999999999999999999887665554432221 3445555543210 123
Q ss_pred cchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHH--HhhcCCCCCCEEEeccCchhhhh
Q 048242 173 TEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNV--VLTWGMKEGAVYLWTLPIFHGNG 250 (430)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~--~~~~~~~~~~~~~~~~pl~h~~g 250 (430)
..+.+.+...... ....++++++|+|||||||.||||+++|+++....... ...++++.+|++++.+|++|.++
T Consensus 158 ~~~~~~~~~~~~~----~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 233 (541)
T 1v25_A 158 LAYEEALGEEADP----VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNA 233 (541)
T ss_dssp EEHHHHCCSCCCC----CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHH
T ss_pred ccHHHHhhccCCc----ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhH
Confidence 4455554433221 23467899999999999999999999999998776653 34567889999999999999999
Q ss_pred hHHHHHHHhhcceEEEeCC-CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHH
Q 048242 251 WCFTWSLAALCGTSVMLRQ-ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLA 329 (430)
Q Consensus 251 l~~~~~~l~~g~~~v~~~~-~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~ 329 (430)
+...+.+++.|+++++.+. +++..+++.++++++|+++++|+++..+.+.......+ +++||.+++||+++++++.++
T Consensus 234 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gG~~l~~~~~~~ 312 (541)
T 1v25_A 234 WCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHR-LKTLRRLVVGGSAAPRSLIAR 312 (541)
T ss_dssp HTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCC-CSSCCEEEECSSCCCHHHHHH
T ss_pred HHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCc-chhccEEEECCCCCCHHHHHH
Confidence 9878888999999999864 79999999999999999999999999998764433344 899999999999999999999
Q ss_pred HHhcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEec
Q 048242 330 MSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRG 409 (430)
Q Consensus 330 ~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g 409 (430)
++.+|+++++.||+||+++.++.+.....+.....+......+++|+|++++ +++|+|++ +++++.++++.|||+|+|
T Consensus 313 ~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~~-g~~~~~~~~~~GEl~v~g 390 (541)
T 1v25_A 313 FERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADEE-GRPVPKDGKALGEVQLKG 390 (541)
T ss_dssp HHHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTC-EEEEECTT-SCBCCSSSCCCEEEEEES
T ss_pred HHHhCCceeecccccccccceecccccccccccCccccccccCCCCCcCCCc-EEEEECCC-CCCCCCCCCcceEEEEeC
Confidence 9778999999999999987776654332222222222234568999999999 99999988 899986433689999999
Q ss_pred CcccccccCCcccchHhhh-CC
Q 048242 410 NMVMKGYLKNPKANEEAFA-NG 430 (430)
Q Consensus 410 ~~v~~gY~~~~~~t~~~f~-dg 430 (430)
++++.|||++|++|+++|. ||
T Consensus 391 ~~v~~GY~~~p~~t~~~f~~~g 412 (541)
T 1v25_A 391 PWITGGYYGNEEATRSALTPDG 412 (541)
T ss_dssp TTSBSSCBTCHHHHHTTBCTTS
T ss_pred cchhccccCChhhhhhhccCCC
Confidence 9999999999999999995 54
No 3
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=5.4e-60 Score=469.94 Aligned_cols=378 Identities=20% Similarity=0.285 Sum_probs=325.3
Q ss_pred CCCCCCCCHHHHHHHHHhhCCCcceEEECC--------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHH
Q 048242 14 PANFTALTPLWFLERAATVHPTRKSVVYES--------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYE 85 (430)
Q Consensus 14 ~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~--------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~ 85 (430)
....+..++.++|+++++++|+++|+++.+ +++||+||.++++++|+.|.+.|+++||+|+++++|++++++
T Consensus 13 ~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~ 92 (549)
T 3g7s_A 13 SLYYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVM 92 (549)
T ss_dssp CCCCCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred CCCcCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH
Confidence 345678899999999999999999999977 899999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCccc
Q 048242 86 VHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLE 165 (430)
Q Consensus 86 ~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (430)
++|||+++|++++|++|.++.+++.++++.++++++|++......+....... ....++.++..
T Consensus 93 ~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-------- 156 (549)
T 3g7s_A 93 TIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--------GVERVFVVGGE-------- 156 (549)
T ss_dssp HHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--------CCCEEEEETCS--------
T ss_pred HHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--------CCcEEEEeCCC--------
Confidence 99999999999999999999999999999999999999998877665543322 23445544421
Q ss_pred ccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCc
Q 048242 166 YALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPI 245 (430)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl 245 (430)
...+.+................++++++|+|||||||.||||+++|+++.+.+.+....+++..+|++++.+|+
T Consensus 157 ------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~ 230 (549)
T 3g7s_A 157 ------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPM 230 (549)
T ss_dssp ------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCT
T ss_pred ------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcH
Confidence 23555655544433222222334899999999999999999999999999999988888999999999999999
Q ss_pred hhhhhhHHHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCC--CCCCCceeEEeecCCCCC
Q 048242 246 FHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDT--ILPLPHVVNVNTGGSPPP 323 (430)
Q Consensus 246 ~h~~gl~~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~--~~~l~~lr~v~~~G~~l~ 323 (430)
+|.+++...+.++..|+++++.+.+++..+++.|+++++|+++++|+++..+.+...... .+ +++||.+++||++++
T Consensus 231 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~~~~gg~~l~ 309 (549)
T 3g7s_A 231 FHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYD-WSYLKVFATGAWPVA 309 (549)
T ss_dssp TSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCC-CTTCCEEEEESSCCC
T ss_pred HHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCC-ccceeEEEeCCccCC
Confidence 999999888888899999999999999999999999999999999999999987543322 34 899999999999999
Q ss_pred HHHHHHHHh-----cC---cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCC
Q 048242 324 PPILLAMSQ-----KG---FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPI 395 (430)
Q Consensus 324 ~~~~~~~~~-----~~---~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~ 395 (430)
+++.+++++ ++ +++++.||+||++++++.+... .....+++|+|++++ +++|+|+++++++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~----------~~~~~~~~G~p~~~~-~~~i~d~~~g~~~ 378 (549)
T 3g7s_A 310 PALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPL----------RLDKSTTQGVPMSDI-ELKVISLEDGREL 378 (549)
T ss_dssp HHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGG----------GGGGTTSCCEECTTC-EEEEECSSSCCEE
T ss_pred HHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCcc----------ccCcCCCccccCCCC-EEEEEeCCCCcCC
Confidence 999999984 45 8999999999998877654321 123558899999999 9999996669999
Q ss_pred CCCCCceeEEEEecCcccccccCCcccchHhh
Q 048242 396 PADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 396 ~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f 427 (430)
+.| +.|||+|+|++++.|||++|++|+++|
T Consensus 379 ~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f 408 (549)
T 3g7s_A 379 GVG--ESGEIVIRGPNIFKGYWKREKENQECW 408 (549)
T ss_dssp CTT--CCEEEEEESTTSCSEETTCTTGGGTSE
T ss_pred CCC--CceEEEEECcchhhhhCCChhhhhhhh
Confidence 999 899999999999999999999999998
No 4
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=8.7e-60 Score=467.09 Aligned_cols=381 Identities=20% Similarity=0.323 Sum_probs=324.3
Q ss_pred CCCHHHHHHHHHhhCCCcceEEEC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYE--SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
..++.++|.+.++++|+++|+++. ++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 21 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav 100 (536)
T 3ni2_A 21 NLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAI 100 (536)
T ss_dssp SCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred CCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCE
Confidence 478999999999999999999985 589999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchh
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYE 176 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (430)
++|++|.++.+++.++++.++++++|++......+........ ..++.++... .+...+.
T Consensus 101 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-----------~~~~~~~ 160 (536)
T 3ni2_A 101 ITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD---------VKVMCVDSAP-----------DGCLHFS 160 (536)
T ss_dssp EEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHT---------CEEEESSCCC-----------TTCEETH
T ss_pred EeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcC---------ceEEEecCCC-----------CCccCHH
Confidence 9999999999999999999999999999988777666544322 3444444321 2234555
Q ss_pred hhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh----hcCCCCCCEEEeccCchhhhhhH
Q 048242 177 KLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL----TWGMKEGAVYLWTLPIFHGNGWC 252 (430)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~~~~~pl~h~~gl~ 252 (430)
++........ ......++++++|+|||||||.||||+++|+++.+.+..... .+.+..+|++++.+|++|.+++.
T Consensus 161 ~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~ 239 (536)
T 3ni2_A 161 ELTQADENEA-PQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALN 239 (536)
T ss_dssp HHHTSCGGGC-CCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHH
T ss_pred HHhhcccccc-ccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHH
Confidence 5554332221 223457899999999999999999999999999888776543 34678899999999999999986
Q ss_pred -HHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH
Q 048242 253 -FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS 331 (430)
Q Consensus 253 -~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~ 331 (430)
.++.++..|+++++.+.+++..+++.++++++|+++++|+++..+.+.......+ +++||.+++||+++++++.++++
T Consensus 240 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gGe~l~~~~~~~~~ 318 (536)
T 3ni2_A 240 SIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHD-LSSLRMIKSGGAPLGKELEDTVR 318 (536)
T ss_dssp HTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSC-CTTCCEEEEESSCCCHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCC-CccceEEEECCCCCCHHHHHHHH
Confidence 4677888999999999999999999999999999999999999999987766666 99999999999999999999998
Q ss_pred -hc-CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEec
Q 048242 332 -QK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRG 409 (430)
Q Consensus 332 -~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g 409 (430)
.+ ++++++.||+||+++.++.+..... .......+++|+|++++ +++|+|++++++++.| +.|||+|+|
T Consensus 319 ~~~~~~~l~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g 389 (536)
T 3ni2_A 319 AKFPQARLGQGYGMTEAGPVLAMCLAFAK------EPFDIKPGACGTVVRNA-EMKIVDPETGASLPRN--QPGEICIRG 389 (536)
T ss_dssp HHCTTSEEEEEEECGGGSSEEEECGGGSS------SCCCCCTTCCCEECSSC-EEEEECTTTCCBCCTT--CCEEEEEES
T ss_pred HHCCCCCccccccccccchhhhcccccCC------ccccCCCCCeeEeCCCc-EEEEEeCCCCcCCCCC--CccEEEEeC
Confidence 56 8999999999999877665432110 01112457899999999 9999998879999998 899999999
Q ss_pred CcccccccCCcccchHhh-hCC
Q 048242 410 NMVMKGYLKNPKANEEAF-ANG 430 (430)
Q Consensus 410 ~~v~~gY~~~~~~t~~~f-~dg 430 (430)
++++.|||++|++|++.| .||
T Consensus 390 ~~v~~GY~~~p~~t~~~~~~~g 411 (536)
T 3ni2_A 390 DQIMKGYLNDPEATSRTIDKEG 411 (536)
T ss_dssp TTSCSEETTCHHHHHHHBCTTS
T ss_pred cccchhhcCChhHHHhhccCCC
Confidence 999999999999999998 343
No 5
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=2.8e-59 Score=464.08 Aligned_cols=380 Identities=16% Similarity=0.232 Sum_probs=319.0
Q ss_pred CCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 17 FTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 17 ~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
+...++.++|+++++++|+++|+++.++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|++
T Consensus 27 ~~~~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav 106 (544)
T 3o83_A 27 WIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVV 106 (544)
T ss_dssp CCCCCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred CCCCCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccH-----HHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCC
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYF-----ALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKG 171 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (430)
++|++|.++.+++.++++.++++++|++.... ........... ....++.+++...
T Consensus 107 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 107 VLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNL-------SPEIILMLNHQAT------------ 167 (544)
T ss_dssp EEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTC-------CCSEEEEETCCTT------------
T ss_pred EecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhccc-------CcceEEEecCCcc------------
Confidence 99999999999999999999999999987653 22222222221 3344555443211
Q ss_pred ccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhh
Q 048242 172 VTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGW 251 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl 251 (430)
...+.+................++++++|+|||||||.||||+++|+++.+.+.+....+++..+|++++.+|++|.+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 247 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFML 247 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHH
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeec
Confidence 12233333332222222234568999999999999999999999999999999999889999999999999999999988
Q ss_pred H--HHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHH
Q 048242 252 C--FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLA 329 (430)
Q Consensus 252 ~--~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~ 329 (430)
. .++.++..|+++++.+.+++..+++.++++++|+++++|+++..+++.......+ +++||.+++||+++++++.++
T Consensus 248 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~i~~gG~~l~~~~~~~ 326 (544)
T 3o83_A 248 SSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQ-IQSLKLLQVGGASFPESLARQ 326 (544)
T ss_dssp HSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHH-HTTCCEEEEESSCCCHHHHTH
T ss_pred chHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcccc-CCcceEEEEcCCCCCHHHHHH
Confidence 7 3778888999999999999999999999999999999999999999876555555 899999999999999999999
Q ss_pred HH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCcc-ccccceEEeeCCCCCCCCCCCCceeEEEE
Q 048242 330 MS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKC-MCLEGLDVLDTKTNQPIPADGKTIGEVVM 407 (430)
Q Consensus 330 ~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~-~~~~~~~v~d~~~~~~~~~~~~~~Gel~v 407 (430)
++ .+++++++.||+||++..+.... ........++|+|+ +++ +++|+|++ +++++.| ++|||+|
T Consensus 327 ~~~~~~~~~~~~YG~TE~~~~~~~~~----------~~~~~~~~~~G~p~~~~~-~~~i~d~~-~~~~~~g--~~GEl~v 392 (544)
T 3o83_A 327 VPEVLNCKLQQVFGMAEGLVNYTRLD----------DSDEQIFTTQGRPISSDD-EIKIVDEQ-YREVPEG--EIGMLAT 392 (544)
T ss_dssp HHHHHCSEEEEEEECTTSCEEECCTT----------SCHHHHHHCCCEESCTTC-EEEEECTT-SCBCCTT--CCEEEEE
T ss_pred HHHHhCCcEEeeeccccccceeecCC----------CchhhccCCCceecCCCc-EEEEECCC-CCCCCCC--CeeEEEE
Confidence 98 56999999999999875443321 11223457899996 788 89999977 9999999 8999999
Q ss_pred ecCcccccccCCcccchHhh-hCC
Q 048242 408 RGNMVMKGYLKNPKANEEAF-ANG 430 (430)
Q Consensus 408 ~g~~v~~gY~~~~~~t~~~f-~dg 430 (430)
+|++++.|||++|++|+++| .||
T Consensus 393 ~g~~v~~GY~~~~~~t~~~f~~~g 416 (544)
T 3o83_A 393 RGPYTFCGYYQSPEHNSQVFDEDN 416 (544)
T ss_dssp ECTTSCSCCTTCHHHHHHHBCTTC
T ss_pred ecCCcchhhcCChhhhhhhCCCCC
Confidence 99999999999999999999 454
No 6
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=2e-59 Score=462.35 Aligned_cols=378 Identities=24% Similarity=0.295 Sum_probs=319.0
Q ss_pred CCCCCCCHHHHHHHHHhhCCCcceEEECCe--eeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhh
Q 048242 15 ANFTALTPLWFLERAATVHPTRKSVVYESK--HYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPM 92 (430)
Q Consensus 15 ~~~~~~t~~~~l~~~~~~~p~~~a~~~~~~--~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 92 (430)
......++.++|++.++.+|+++|+++.+. ++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||++
T Consensus 11 ~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 90 (517)
T 3r44_A 11 DDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAK 90 (517)
T ss_dssp -CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CcccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHH
Confidence 345677999999999999999999999765 999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCc
Q 048242 93 TGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGV 172 (430)
Q Consensus 93 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (430)
+|++++|++|.++.+++.++++.++++++|++.+....+........ ....++.+.. .
T Consensus 91 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~---------------~ 148 (517)
T 3r44_A 91 LGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQAD-------PPGTVTDWIG---------------A 148 (517)
T ss_dssp HTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSS-------CCTTCCEEEE---------------H
T ss_pred hCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccC-------CccEEEEccC---------------c
Confidence 99999999999999999999999999999999887776655543222 1111111111 0
Q ss_pred cchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhH
Q 048242 173 TEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWC 252 (430)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~ 252 (430)
..+.+.+....... ......++++++|+|||||||.||||+++|+++.+.+.+....++++.+|++++.+|++|.+++.
T Consensus 149 ~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~ 227 (517)
T 3r44_A 149 DSLAERLRSAAADE-PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALT 227 (517)
T ss_dssp HHHHHHHHHCCCCC-CCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHH
T ss_pred ccHHHHhhccCcCC-CCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHH
Confidence 22333333322221 22345789999999999999999999999999999999888889999999999999999999998
Q ss_pred HHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHh
Q 048242 253 FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQ 332 (430)
Q Consensus 253 ~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~ 332 (430)
..+.+++.|+++++.+.+++..+++.+.++++|+++++|++++.+.+.......+ +++||.+++||+++++++.+++++
T Consensus 228 ~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~i~~gGe~l~~~~~~~~~~ 306 (517)
T 3r44_A 228 TVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELD-APDFRYFITGGAPMPEALIKIYAA 306 (517)
T ss_dssp HHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCC-CTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCC-CCcccEEEECCCCCCHHHHHHHHh
Confidence 7666666999999999999999999999999999999999999998876544455 899999999999999999999997
Q ss_pred cCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcc
Q 048242 333 KGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMV 412 (430)
Q Consensus 333 ~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v 412 (430)
.++++++.||+||+++.++..... ......+++|+|.+++ +++|+|++ +++++.| .|||+|+|+++
T Consensus 307 ~~~~~~~~YG~TE~~~~~~~~~~~---------~~~~~~~~~G~~~~~~-~~~i~d~~-~~~~~~g---~GEl~v~g~~v 372 (517)
T 3r44_A 307 KNIEVVQGYALTESCGGGTLLLSE---------DALRKAGSAGRATMFT-DVAVRGDD-GVIREHG---EGEVVIKSDIL 372 (517)
T ss_dssp TTCEEEEEEECGGGTTCEEEECGG---------GTTTTTTCCBEECTTE-EEEEECTT-SCEESSE---EEEEEEEETTS
T ss_pred cCCcEEEeecccccccceeecCCc---------cccccCCCCCcCCCCe-EEEEECCC-CCCCCCC---CeEEEEeCcch
Confidence 799999999999998776654322 1123458899999999 99999987 8888875 69999999999
Q ss_pred cccccCCcccchHhhhCC
Q 048242 413 MKGYLKNPKANEEAFANG 430 (430)
Q Consensus 413 ~~gY~~~~~~t~~~f~dg 430 (430)
+.|||++|++|+++|.+|
T Consensus 373 ~~GY~~~p~~t~~~f~~g 390 (517)
T 3r44_A 373 LKEYWNRPEATRDAFDNG 390 (517)
T ss_dssp CSEETTCHHHHHHTEETT
T ss_pred hhhhCCChhhhHhhhcCC
Confidence 999999999999999765
No 7
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=6.2e-59 Score=461.10 Aligned_cols=377 Identities=20% Similarity=0.226 Sum_probs=314.3
Q ss_pred CCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 17 FTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 17 ~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
+...++.++|+++++++|+++|+++.++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 22 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 101 (539)
T 1mdb_A 22 WAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101 (539)
T ss_dssp SCSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred ccCCCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccH-----HHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCC
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYF-----ALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKG 171 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (430)
++|++|.++.+++.++++.++++++|++.+.. ..+.......+ ....++..++..
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLP-------TLKNIIVAGEAE------------- 161 (539)
T ss_dssp EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCT-------TCCCEEEESCCT-------------
T ss_pred EecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCC-------CccEEEEcCCcc-------------
Confidence 99999999999999999999999999987532 22233322222 334444443211
Q ss_pred ccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhh
Q 048242 172 VTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGW 251 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl 251 (430)
.+.++...... ........++++++|+|||||||.||||+++|+++.+.+.+....++++.+|++++.+|++|.+++
T Consensus 162 --~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 238 (539)
T 1mdb_A 162 --EFLPLEDLHTE-PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPL 238 (539)
T ss_dssp --TSEEGGGCCCC-CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHH
T ss_pred --chhhhhhcccc-ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchh
Confidence 11122211111 111134567899999999999999999999999999998888888899999999999999999998
Q ss_pred H--HHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHH
Q 048242 252 C--FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLA 329 (430)
Q Consensus 252 ~--~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~ 329 (430)
. .++.+++.|+++++.+.+++..+++.|+++++|+++++|+++..+.+.......+ +++||.+++||+++++++.++
T Consensus 239 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~~~~gG~~l~~~~~~~ 317 (539)
T 1mdb_A 239 SSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDD-LSSLQVLQVGGAKFSAEAARR 317 (539)
T ss_dssp HSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCC-CTTCCEEEEESSCCCHHHHTT
T ss_pred hHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCC-ccceeEEEEcCCCCCHHHHHH
Confidence 7 4788899999999999999999999999999999999999999998765444445 899999999999999999999
Q ss_pred HH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEe
Q 048242 330 MS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMR 408 (430)
Q Consensus 330 ~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~ 408 (430)
++ .+++++++.||+||++..+... . .......+++|+|+++..+++|+|++ +++++.| +.|||+|+
T Consensus 318 ~~~~~~~~~~~~YG~TE~~~~~~~~--~--------~~~~~~~~~~G~p~~~~~~~~i~d~~-~~~~~~g--~~GEl~v~ 384 (539)
T 1mdb_A 318 VKAVFGCTLQQVFGMAEGLVNYTRL--D--------DPEEIIVNTQGKPMSPYDESRVWDDH-DRDVKPG--ETGHLLTR 384 (539)
T ss_dssp HHHHTCSEEEEEEECTTSCEEECCT--T--------SCHHHHHHCCCEESSTTCEEEEECTT-SCBCCTT--CCEEEEEE
T ss_pred HHHHhCCcEEEEEcCCCCcccccCC--C--------CcHHhcCCCCCcccCCCceEEEECCC-CCCCcCC--CcceEEee
Confidence 98 5799999999999965332211 1 11123457899999764369999987 9999998 89999999
Q ss_pred cCcccccccCCcccchHhh-hCC
Q 048242 409 GNMVMKGYLKNPKANEEAF-ANG 430 (430)
Q Consensus 409 g~~v~~gY~~~~~~t~~~f-~dg 430 (430)
|++++.|||++|++|+++| .||
T Consensus 385 g~~v~~GY~~~~~~t~~~f~~~g 407 (539)
T 1mdb_A 385 GPYTIRGYYKAEEHNAASFTEDG 407 (539)
T ss_dssp CTTSCSSCTTCHHHHHHHBCTTS
T ss_pred CcccchhhcCChhhhhhhccCCC
Confidence 9999999999999999999 454
No 8
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=7.1e-59 Score=458.07 Aligned_cols=372 Identities=24% Similarity=0.374 Sum_probs=316.1
Q ss_pred CCCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC
Q 048242 16 NFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA 95 (430)
Q Consensus 16 ~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 95 (430)
.+...|+.++|+++++++|+++|+++.++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|+
T Consensus 2 s~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 81 (509)
T 3ivr_A 2 SLHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGA 81 (509)
T ss_dssp CTTCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred CCCcCCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccch
Q 048242 96 VLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEY 175 (430)
Q Consensus 96 ~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (430)
+++|++|.++.+++.++++.++++++|++.+....+........ ....++.+++.. ..+
T Consensus 82 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--------------~~~ 140 (509)
T 3ivr_A 82 ILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLG-------GVKKAYAIGDGS--------------GPF 140 (509)
T ss_dssp EEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCS-------SCCEEEESSCCC--------------SSC
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccC-------CceEEEEcCCCC--------------cCh
Confidence 99999999999999999999999999999887665444332222 445555554421 122
Q ss_pred hhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHH
Q 048242 176 EKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTW 255 (430)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~ 255 (430)
.++...............++++++|+|||||||.||+|+++|+++.+.+.+....++++.+|++++.+|++|.+++...+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~ 220 (509)
T 3ivr_A 141 APFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLML 220 (509)
T ss_dssp EEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHH
T ss_pred hhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHH
Confidence 22222111122222456789999999999999999999999999999999998999999999999999999999999888
Q ss_pred HHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hc-
Q 048242 256 SLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QK- 333 (430)
Q Consensus 256 ~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~- 333 (430)
.+++.|++.++...+++..+++.++++++|+++++|+++..+++... ..+ +++||.++.+|++ ++.++++ .+
T Consensus 221 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~-l~~lr~~~~~g~~---~~~~~~~~~~~ 294 (509)
T 3ivr_A 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--PAQ-LASLRAVTGLDTP---ETIERFEATCP 294 (509)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC--GGG-GTTCCEEEEECCH---HHHHHHHHHCT
T ss_pred HHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc--ccc-hhhhheecccCCh---HHHHHHHHhcC
Confidence 87778888888878999999999999999999999999999998762 233 8899999999987 7777777 55
Q ss_pred CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCccc
Q 048242 334 GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVM 413 (430)
Q Consensus 334 ~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~ 413 (430)
++++++.||+||++++++.+...+ ...++|+|++++ +++|+|++ +++++.| ++|||+|+|++++
T Consensus 295 ~~~~~~~YG~TE~~~~~~~~~~~~------------~~~~~G~p~~~~-~~~i~d~~-~~~~~~g--~~GEl~v~g~~~~ 358 (509)
T 3ivr_A 295 NATFWATFGQSETSGLSTFAPYRD------------RPKSAGRPLFWR-TVAVVDAE-DRPLPPG--EVGEIVLRGPTVF 358 (509)
T ss_dssp TCEEEEEEEEGGGTEEEEEEEGGG------------STTSCCEECTTC-EEEEECTT-SCBCCTT--CCEEEEEESTTSC
T ss_pred CCeEEcccCccccccccccCcccc------------CCCcccccCCCc-EEEEECCC-CCCCCCC--CceEEEEecCCcc
Confidence 999999999999988777654321 224599999999 99999998 9999999 8999999999999
Q ss_pred ccccCCcccchHhhhCC
Q 048242 414 KGYLKNPKANEEAFANG 430 (430)
Q Consensus 414 ~gY~~~~~~t~~~f~dg 430 (430)
.|||++|++|+++|.||
T Consensus 359 ~gY~~~~~~t~~~f~~g 375 (509)
T 3ivr_A 359 KGYWNNAAATQHAFRNG 375 (509)
T ss_dssp CEETTCHHHHHHHTGGG
T ss_pred ccccCCHHHhHHHhhcC
Confidence 99999999999999764
No 9
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=6.1e-58 Score=454.60 Aligned_cols=378 Identities=17% Similarity=0.210 Sum_probs=316.1
Q ss_pred CCHHH-HHHHHHhhCCCcceEEE--CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 20 LTPLW-FLERAATVHPTRKSVVY--ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 20 ~t~~~-~l~~~~~~~p~~~a~~~--~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
.++.+ ++.+.++++ +++|+++ .++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav 103 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence 47888 888888889 9999998 4689999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchh
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYE 176 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (430)
++|++|.++.+++.++++.++++++|++.+....+.......+ ....++.+++... ..+...+.
T Consensus 104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---------~~~~~~~~ 167 (548)
T 2d1s_A 104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVT-------TIKTIVILDSKVD---------YRGYQCLD 167 (548)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHST-------TCCEEEETTCSSC---------BTTBCBHH
T ss_pred EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCC-------CCCEEEEeCCccc---------ccccccHH
Confidence 9999999999999999999999999999987766655443322 2345555543210 01233466
Q ss_pred hhhhcCCCCCCCCCCC------CCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhh---cCCCCCCEEEeccCchh
Q 048242 177 KLLETGDPEFAWKPPR------DEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLT---WGMKEGAVYLWTLPIFH 247 (430)
Q Consensus 177 ~~~~~~~~~~~~~~~~------~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~pl~h 247 (430)
+++............. .++++++|+|||||||.||+|+++|+++.+.+.+.... ++++.+|++++.+|++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 247 (548)
T 2d1s_A 168 TFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHH 247 (548)
T ss_dssp HHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTS
T ss_pred HHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHH
Confidence 6554432110000111 23899999999999999999999999999888877766 67889999999999999
Q ss_pred hhhhHH-HHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHH
Q 048242 248 GNGWCF-TWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPI 326 (430)
Q Consensus 248 ~~gl~~-~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~ 326 (430)
.+++.. ++.++ .|+++++.+.+++..+++.|+++++|+++++|++++.+.+.......+ +++||.+++||+++++++
T Consensus 248 ~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gG~~l~~~~ 325 (548)
T 2d1s_A 248 GFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYD-LSNLVEIASGGAPLSKEV 325 (548)
T ss_dssp HHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSC-CTTCCEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccccccc-ccceeEEEEcCccCCHHH
Confidence 999886 45555 999999999899999999999999999999999999999876555555 899999999999999999
Q ss_pred HHHHH-hc-CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeE
Q 048242 327 LLAMS-QK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGE 404 (430)
Q Consensus 327 ~~~~~-~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Ge 404 (430)
.++++ .+ ++++++.||+||+++.++.+... ....+++|+|++++ +++|+|++++++++.| +.||
T Consensus 326 ~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GE 391 (548)
T 2d1s_A 326 GEAVARRFNLPGVRQGYGLTETTSAIIITPEG-----------DDKPGASGKVVPLF-KAKVIDLDTKKSLGPN--RRGE 391 (548)
T ss_dssp HHHHHHHTTCSCCEEEEECGGGSSEEEECCTT-----------CCCTTCCBEECTTC-EEEEECTTTCCBCCTT--CCEE
T ss_pred HHHHHHHcCCCceeeccccccccceeeecCcc-----------cCCCCCCCccCCCc-eEEEEeCCcCccCCCC--CCeE
Confidence 99998 56 78899999999998766653211 12347899999999 9999997669999998 8999
Q ss_pred EEEecCcccccccCCcccchHhh-hCC
Q 048242 405 VVMRGNMVMKGYLKNPKANEEAF-ANG 430 (430)
Q Consensus 405 l~v~g~~v~~gY~~~~~~t~~~f-~dg 430 (430)
|+|+|++++.|||++|++|++.| .||
T Consensus 392 l~v~g~~v~~GY~~~~~~t~~~f~~~g 418 (548)
T 2d1s_A 392 VCVKGPMLMKGYVNNPEATKELIDEEG 418 (548)
T ss_dssp EEEESTTSCSEETTCHHHHHHHBCTTS
T ss_pred EEECCHHHhhhhcCChHHhhhcccCCc
Confidence 99999999999999999999999 444
No 10
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.9e-57 Score=453.22 Aligned_cols=377 Identities=15% Similarity=0.185 Sum_probs=317.7
Q ss_pred CCH-HHHHHHHHhhCCCcceEEEC-----CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhc
Q 048242 20 LTP-LWFLERAATVHPTRKSVVYE-----SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMT 93 (430)
Q Consensus 20 ~t~-~~~l~~~~~~~p~~~a~~~~-----~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~ 93 (430)
.++ .++|++.++.+|+++|+++. ++++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++
T Consensus 55 ~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~ 134 (580)
T 3etc_A 55 FNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKL 134 (580)
T ss_dssp CCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhC
Confidence 344 49999999999999999972 378999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeccccCChhhHHHHHhhcCceEEEeccccH--HHHHHHHHHhhccCCCCCCC-CeEEEecCCCCCCCcccccccC
Q 048242 94 GAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYF--ALAEEALKIMEGKSEGLFKP-PVLIVIGDETCDRAPLEYALSK 170 (430)
Q Consensus 94 G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 170 (430)
|++++|++|.++.+++.++++.++++++|++.+.. ..+.......+ .. ..++.++... ..
T Consensus 135 Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~----------~~ 197 (580)
T 3etc_A 135 GAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECG-------DIPLKKAKVGGDV----------LE 197 (580)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHC-------SCCCEEEEESSSC----------CT
T ss_pred CEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCC-------CcceEEEEeCCcc----------cc
Confidence 99999999999999999999999999999988754 55555554443 33 4455554321 23
Q ss_pred CccchhhhhhcCCCCCCCC---CCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchh
Q 048242 171 GVTEYEKLLETGDPEFAWK---PPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFH 247 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h 247 (430)
++..+.+.+.........+ ....++|+++|+|||||||.||+|.++|.++...+.......++..++++++..|++|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (580)
T 3etc_A 198 GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGW 277 (580)
T ss_dssp TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTS
T ss_pred ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHH
Confidence 4566766665544432221 2457899999999999999999999999999888777777778899999999999999
Q ss_pred hhhhHH-HHHHHhhcceEEEe--CCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCH
Q 048242 248 GNGWCF-TWSLAALCGTSVML--RQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPP 324 (430)
Q Consensus 248 ~~gl~~-~~~~l~~g~~~v~~--~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~ 324 (430)
..+++. ++.++..|+++++. ..+++..+++.|+++++|+++++|++++.+.+... ...+ +++||.+++||+++++
T Consensus 278 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~-l~~lr~i~~gGe~l~~ 355 (580)
T 3etc_A 278 GKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL-SHYN-FSTLKYAVVAGEPLNP 355 (580)
T ss_dssp THHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC----C-CTTCCEEEECSSCCCH
T ss_pred HHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhccc-ccCC-CccceEEEEccCCCCH
Confidence 888774 67778888888887 57899999999999999999999999999998633 3344 8999999999999999
Q ss_pred HHHHHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCcee
Q 048242 325 PILLAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIG 403 (430)
Q Consensus 325 ~~~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~G 403 (430)
++.++|+ .+|+++++.||+||+++.++..... ..+.+++|+|++++ +++|+|++ +++++.| +.|
T Consensus 356 ~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~p~~~~-~v~ivd~~-g~~~~~g--~~G 420 (580)
T 3etc_A 356 EVFNRFLEFTGIKLMEGFGQTETVVTIATFPWM-----------EPKPGSIGKPTPGY-KIELMDRD-GRLCEVG--EEG 420 (580)
T ss_dssp HHHHHHHHHHSCCCEEEECCTTSSCCEECCTTS-----------CCCTTCCBEECTTC-EEEEECTT-SCBCCTT--CCE
T ss_pred HHHHHHHHHhCCeEecccccccccceeecCCCC-----------CCCCCccccCCCCC-EEEEECCC-CCCCCCC--Cce
Confidence 9999998 5699999999999997665543321 12458899999999 99999998 9999999 899
Q ss_pred EEEEec-----CcccccccCCcccchHhhhCC
Q 048242 404 EVVMRG-----NMVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 404 el~v~g-----~~v~~gY~~~~~~t~~~f~dg 430 (430)
||+|+| ++++.|||++|++|++.|.||
T Consensus 421 El~v~~~~g~~~~~~~gY~~~p~~t~~~f~~g 452 (580)
T 3etc_A 421 EIVINTMEGKPVGLFVHYGKDPERTEETWHDG 452 (580)
T ss_dssp EEEEECTTCCCTTCCCEETTCHHHHHHHEETT
T ss_pred EEEEecCCCCCCeeeccccCCHhHHHhhcCCC
Confidence 999997 789999999999999999765
No 11
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=6.3e-58 Score=450.07 Aligned_cols=365 Identities=19% Similarity=0.235 Sum_probs=307.7
Q ss_pred HHHHHHHhhCCCcceEE---ECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeec
Q 048242 24 WFLERAATVHPTRKSVV---YESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCI 100 (430)
Q Consensus 24 ~~l~~~~~~~p~~~a~~---~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l 100 (430)
++|++.++++|+++++. +.++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 47889999999999888 356899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhhh
Q 048242 101 NFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLE 180 (430)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (430)
+|.++.+++.++++.++++++|++.+....+........ ..++.++... ...+.+...
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-------------~~~~~~~~~ 141 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG---------ATVETLGPDG-------------RGSLTDAAA 141 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHT---------CEEEECCTTS-------------CSHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcC---------ceEEEecCCc-------------ccccchhhh
Confidence 999999999999999999999999876655544443332 2333333221 011222221
Q ss_pred cCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhH-HHHHHHh
Q 048242 181 TGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWC-FTWSLAA 259 (430)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~-~~~~~l~ 259 (430)
..... .......++++++|+|||||||.||||+++|+++.+.+.+....++++.+|++++.+|++|.+|+. ..+.+++
T Consensus 142 ~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~ 220 (503)
T 4fuq_A 142 GASEA-FATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLF 220 (503)
T ss_dssp TSCSC-CCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHH
T ss_pred cCCCC-cCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHH
Confidence 11111 122345689999999999999999999999999999999998899999999999999999999976 4677888
Q ss_pred hcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hcCcEEE
Q 048242 260 LCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QKGFRVT 338 (430)
Q Consensus 260 ~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~v~ 338 (430)
.|+++++.+.+++..+++.++ ++|+++++|+++..++......... +++||.+++||+++++++.++|+ .++++++
T Consensus 221 ~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~ 297 (503)
T 4fuq_A 221 ARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKET-TGHMRLFISGSAPLLADTHREWSAKTGHAVL 297 (503)
T ss_dssp TTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTT-TTTCCEEEECSSCCCHHHHHHHHHHHSCCEE
T ss_pred hCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccc-hhhcEEEEECCCCCCHHHHHHHHHHhCCCcc
Confidence 999999999999999999998 8999999999999999987766666 89999999999999999999998 5699999
Q ss_pred eeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccC
Q 048242 339 HVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLK 418 (430)
Q Consensus 339 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~ 418 (430)
+.||+||++..++..... ....+++|+|++++ +++|+|++++++++.| ++|||+|+|++++.|||+
T Consensus 298 ~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~ 363 (503)
T 4fuq_A 298 ERYGMTETNMNTSNPYDG-----------DRVPGAVGPALPGV-SARVTDPETGKELPRG--DIGMIEVKGPNVFKGYWR 363 (503)
T ss_dssp ECCEETTTEECBCCCSSS-----------CCCTTEEEEBCTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCCCBTT
T ss_pred ceEcccccCcccccCCCC-----------CCcCCccccCCCCe-EEEEEECCCCCCCcCC--CceEEEEECCchhhhhcC
Confidence 999999998665432111 12347899999999 9999997779999999 899999999999999999
Q ss_pred CcccchHhhh
Q 048242 419 NPKANEEAFA 428 (430)
Q Consensus 419 ~~~~t~~~f~ 428 (430)
+|++|+++|.
T Consensus 364 ~~~~t~~~f~ 373 (503)
T 4fuq_A 364 MPEKTKSEFR 373 (503)
T ss_dssp CHHHHHHTBC
T ss_pred ChhhhHhhhC
Confidence 9999999995
No 12
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=9e-59 Score=454.64 Aligned_cols=387 Identities=17% Similarity=0.189 Sum_probs=299.2
Q ss_pred CcCCCCCCCCCCCCHHHHHHHHHhhCCCcceEEECC---------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcC
Q 048242 8 DDLPKNPANFTALTPLWFLERAATVHPTRKSVVYES---------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSP 78 (430)
Q Consensus 8 ~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~---------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ 78 (430)
+..++....++..++.++|++.++++|+++|+++.+ +++||+||.++++++|+.|.++|+ +||+|+|+++
T Consensus 12 ~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~ 90 (480)
T 3t5a_A 12 SGLVPRGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAP 90 (480)
T ss_dssp ------------CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECC
T ss_pred CCCCcccCCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcC
Confidence 455667778889999999999999999999999865 899999999999999999999996 9999999999
Q ss_pred CchhHHHHHHHhhhcCCeeeeccc---cCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEec
Q 048242 79 NVPAMYEVHFGVPMTGAVLNCINF---RLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIG 155 (430)
Q Consensus 79 n~~~~~~~~lA~~~~G~~~~~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 155 (430)
|++++++++|||+++|++++|+++ .++.+++.++++.++++++|++.+....+.......... ....++.++
T Consensus 91 n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 165 (480)
T 3t5a_A 91 QGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGE-----SPPSIIEVD 165 (480)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC-----------CCEEEEGG
T ss_pred CcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccc-----cccceeEec
Confidence 999999999999999999999999 788999999999999999999988766554432111100 112233322
Q ss_pred CCCCCCCcccccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCC
Q 048242 156 DETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKE 235 (430)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~ 235 (430)
... .............++++++|+|||||||.||||+++|+++.+.+.+....+.+..
T Consensus 166 ~~~----------------------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 223 (480)
T 3t5a_A 166 LLD----------------------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADT 223 (480)
T ss_dssp GSC----------------------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTT
T ss_pred ccc----------------------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhcccc
Confidence 211 0011111123456789999999999999999999999999999888888888777
Q ss_pred ------CCEEEeccCchhhhhhH-HHHHHHhhcceEEEeCCC----CHHHHHHHHHhhCceEEeeccHHHHHHHcC----
Q 048242 236 ------GAVYLWTLPIFHGNGWC-FTWSLAALCGTSVMLRQA----SAKAIYKAIAEHGVTNFCAAPIVLNSIVNA---- 300 (430)
Q Consensus 236 ------~~~~~~~~pl~h~~gl~-~~~~~l~~g~~~v~~~~~----~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~---- 300 (430)
+|++++.+|++|.+|+. .++.+++.|+++++.+.+ ++..+++.++++++| +..+|+++..++..
T Consensus 224 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~ 302 (480)
T 3t5a_A 224 DGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTD 302 (480)
T ss_dssp TTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCT
T ss_pred ccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCc
Confidence 99999999999999977 578888999999998753 899999999999999 88899988888753
Q ss_pred CCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hcC------cEEEeeecCccccccccccccCCCCCCC--Chhh-----
Q 048242 301 PPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QKG------FRVTHVYGLSEINGPATVCAWNPNWDSL--PFEA----- 366 (430)
Q Consensus 301 ~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~~------~~v~~~YG~tE~~~~~~~~~~~~~~~~~--~~~~----- 366 (430)
......+ +++||.+++||+++++++.++++ .++ +.+++.||+||+++.++........... ....
T Consensus 303 ~~~~~~~-l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 381 (480)
T 3t5a_A 303 DDMAGRD-LGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGH 381 (480)
T ss_dssp GGGTTCC-CTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTB
T ss_pred ccccccc-hhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCc
Confidence 2223344 89999999999999999999998 543 4699999999998877765443211100 0000
Q ss_pred -------hhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccCCcccchHhhh
Q 048242 367 -------QARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 367 -------~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~ 428 (430)
......++|+|++ + +++|+|++++++++.| ++|||+|+|++++.|||++|++|+++|.
T Consensus 382 ~~~~~~~~~~~~~~~G~p~~-~-~~~ivd~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~ 446 (480)
T 3t5a_A 382 AKPCAGGGATSLISYMLPRS-P-IVRIVDSDTCIECPDG--TVGEIWVHGDNVANGYWQKPDESERTFG 446 (480)
T ss_dssp CCCCCSSSCEEEECEECCSS-S-EEEEEETTTTEECCTT--BCEEEEEESTTSCCCBTTBHHHHHHHHC
T ss_pred eeecCCCCcceeeecCcccC-C-EEEEEcCCCCcCCCCC--CEEEEEEeCCccccccccCcchhHHHHh
Confidence 0234568999999 8 9999999888999999 9999999999999999999999999994
No 13
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.7e-57 Score=448.48 Aligned_cols=364 Identities=18% Similarity=0.206 Sum_probs=307.6
Q ss_pred CCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeee
Q 048242 20 LTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNC 99 (430)
Q Consensus 20 ~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 99 (430)
+++.++|++.++++|+++|+++.++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp 80 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP 80 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhh
Q 048242 100 INFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLL 179 (430)
Q Consensus 100 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (430)
++|.++.+++.++++.+++++++++..... . .....+... ..+.+..
T Consensus 81 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~---------~-------~~~~~~~~~-----------------~~~~~~~ 127 (512)
T 3fce_A 81 VDLSIPADRVQRIAENSGAKLLLSATAVTV---------T-------DLPVRIVSE-----------------DNLKDIF 127 (512)
T ss_dssp EETTSCHHHHHHHHHHSCCCEEEESSCCCS---------S-------CCSSEEEET-----------------HHHHHHH
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEecCcccc---------c-------ccccceech-----------------hhhhhhc
Confidence 999999999999999999999999754210 0 111111000 0111111
Q ss_pred hc-CCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHH
Q 048242 180 ET-GDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258 (430)
Q Consensus 180 ~~-~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l 258 (430)
.. ............++++++|+|||||||.||+|+++|+++.+.+.+....+++..+|++++.+|++|.+++...+.++
T Consensus 128 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 207 (512)
T 3fce_A 128 FTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSL 207 (512)
T ss_dssp HHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHH
T ss_pred ccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHH
Confidence 11 11111122345678999999999999999999999999999999888899999999999999999999998899999
Q ss_pred hhcceEEEeCC---CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hc-
Q 048242 259 ALCGTSVMLRQ---ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QK- 333 (430)
Q Consensus 259 ~~g~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~- 333 (430)
+.|+++++.+. +++..+++.++++++|+++++|+++..++........+ +++||.+++||+++++++.++++ .+
T Consensus 208 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~~G~~l~~~~~~~~~~~~~ 286 (512)
T 3fce_A 208 VTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESM-LPNMKTFLFCGEVLPNEVARKLIERFP 286 (512)
T ss_dssp HTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTT-STTCCEEEECSSCCCHHHHHHHHHHCT
T ss_pred hCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchh-CccccEEEEecCcCCHHHHHHHHHHCC
Confidence 99999999976 68999999999999999999999999999887666666 89999999999999999999998 56
Q ss_pred CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCccc
Q 048242 334 GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVM 413 (430)
Q Consensus 334 ~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~ 413 (430)
++++++.||+||+++.++.....+ .........++|+|.+++ +++|+|++ +++++.| +.|||+|+|++++
T Consensus 287 ~~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~v~ 356 (512)
T 3fce_A 287 KATIMNTYGPTEATVAVTGIHVTE------EVLDQYKSLPVGYCKSDC-RLLIMKED-GTIAPDG--EKGEIVIVGPSVS 356 (512)
T ss_dssp TCEEEEEECCGGGSSCSEEEECCH------HHHHHCSSCCCEEECTTC-EEEEECSS-SCBCCTT--SCEEEEEESTTSC
T ss_pred CCEEEeCcccChhhhheeeEEecc------ccccccCCCccccccCCc-EEEEECCC-CCCCCCC--CeEEEEEeccccC
Confidence 899999999999988776544321 111223457899999999 99999987 9999998 8999999999999
Q ss_pred ccccCCcccchHhh
Q 048242 414 KGYLKNPKANEEAF 427 (430)
Q Consensus 414 ~gY~~~~~~t~~~f 427 (430)
.|||++|++|++.|
T Consensus 357 ~GY~~~~~~t~~~f 370 (512)
T 3fce_A 357 VGYLGSPELTEKAF 370 (512)
T ss_dssp SCBTTCHHHHHHHE
T ss_pred hhhcCCchhhhhcc
Confidence 99999999999998
No 14
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=3.4e-57 Score=448.21 Aligned_cols=379 Identities=18% Similarity=0.242 Sum_probs=307.1
Q ss_pred CCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeee
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLN 98 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~ 98 (430)
..++.++|++.++ +|+++|+++.++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|++++
T Consensus 23 ~~~~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 101 (529)
T 2v7b_A 23 FNFAAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPV 101 (529)
T ss_dssp CCHHHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEE
T ss_pred eeHHHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEE
Confidence 3458899999999 999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCC-CeEEEecCCCCCCCcccccccCCccchhh
Q 048242 99 CINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKP-PVLIVIGDETCDRAPLEYALSKGVTEYEK 177 (430)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (430)
|++|.++.+++.++++.++++++|++.+....+........ .. ..++.++..... ......+.+
T Consensus 102 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~--------~~~~~~~~~ 166 (529)
T 2v7b_A 102 VANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAE-------HDGCQLIVSQPRESE--------PRLAPLFEE 166 (529)
T ss_dssp ECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC----------CCEEEEECC--------------CCCBHHH
T ss_pred ecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhcc-------ccCceEEEecccccc--------cccccchhh
Confidence 99999999999999999999999999887665544432111 22 344444432100 011224555
Q ss_pred hhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHH-HHHHHHHHhhcCCCCCCEEEeccCchhhhhhHH-HH
Q 048242 178 LLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAA-YLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCF-TW 255 (430)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l-~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~-~~ 255 (430)
++....... ......++++++|+|||||||.||+|+++|+++ .+........+++..+|++++.+|++|.+++.. ++
T Consensus 167 ~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~ 245 (529)
T 2v7b_A 167 LIDAAAPAA-KAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLT 245 (529)
T ss_dssp HHHTSCCCS-SCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTH
T ss_pred hhccCCCcc-cccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHH
Confidence 554322221 123456799999999999999999999999999 666555555678889999999999999999875 56
Q ss_pred HHHhhcceEEEe-CCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hc
Q 048242 256 SLAALCGTSVML-RQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QK 333 (430)
Q Consensus 256 ~~l~~g~~~v~~-~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~ 333 (430)
.++..|+++++. +.+++..+++.+.++++|+++++|+++..++......... ..+||.+++||+++++++.++++ .+
T Consensus 246 ~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gGe~l~~~~~~~~~~~~ 324 (529)
T 2v7b_A 246 FPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARA-DVAIRICTSAGEALPREIGERFTAHF 324 (529)
T ss_dssp HHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGG-GCCCCEEEECSSCCCHHHHHHHHHHH
T ss_pred HHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccccccc-CCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 788899999988 6789999999999999999999999999999876544331 23899999999999999999998 56
Q ss_pred CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCccc
Q 048242 334 GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVM 413 (430)
Q Consensus 334 ~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~ 413 (430)
++++++.||+||+++.++.+.... ...+++|+|++++ +++|+|++ +++++.| ++|||+|+|++++
T Consensus 325 g~~i~~~YG~TE~~~~~~~~~~~~-----------~~~~~~G~p~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~~~ 389 (529)
T 2v7b_A 325 GCEILDGIGSTEMLHIFLSNRAGA-----------VEYGTTGRPVPGY-EIELRDEA-GHAVPDG--EVGDLYIKGPSAA 389 (529)
T ss_dssp SCCEEEEEECTTTSSEEEECCTTC-----------CCTTSCCEECTTC-EEEEECTT-SCBCCTT--SCEEEEEECTTCC
T ss_pred CCceeeeEchhhcCceeeccccCC-----------CccCCcccCCCCC-EEEEECCC-CCCCCCC--CccEEEEecCCcc
Confidence 999999999999976655432211 2347899999999 99999987 9999998 8999999999999
Q ss_pred ccccCCcccchHhhhCC
Q 048242 414 KGYLKNPKANEEAFANG 430 (430)
Q Consensus 414 ~gY~~~~~~t~~~f~dg 430 (430)
.|||++++.|++.|.||
T Consensus 390 ~gY~~~~~~t~~~f~~~ 406 (529)
T 2v7b_A 390 VMYWNNREKSRATFLGE 406 (529)
T ss_dssp CCBTTCHHHHHHHEETT
T ss_pred cccCCChHHHHHhhhcC
Confidence 99999999999998654
No 15
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.4e-57 Score=448.98 Aligned_cols=363 Identities=20% Similarity=0.255 Sum_probs=312.1
Q ss_pred CCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHc-CCCCCCeEEEEcCCchhHHHHHHHhhhcCCeee
Q 048242 20 LTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQL-SIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLN 98 (430)
Q Consensus 20 ~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~ 98 (430)
+++.++|+++++++|+++|+++.++++||+||.++++++|+.|.++ |.++|++|+++++|++++++++|||+++|++++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 80 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI 80 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence 4789999999999999999999999999999999999999999975 888999999999999999999999999999999
Q ss_pred eccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhh
Q 048242 99 CINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKL 178 (430)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (430)
|++|.++.+++.++++.++++++|++...... ... .......+.++
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~----------------~~~------------------~~~~~~~~~~~ 126 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELLIHAAGLSID----------------AVG------------------QQIQTVSAEEL 126 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEEEESSSCCTT----------------CCC------------------CSSCEEEHHHH
T ss_pred ecCCCChHHHHHHHHHhCCCCEEEecccccch----------------hcc------------------cccceecHhhh
Confidence 99999999999999999999999996542100 000 00111233444
Q ss_pred hhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHH
Q 048242 179 LETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l 258 (430)
...............++++++|+|||||||.||+|+++|+++.+.+.+....+++..+|++++.+|++|.+++...+.++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 206 (511)
T 3e7w_A 127 LENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCL 206 (511)
T ss_dssp HTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHH
T ss_pred hccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHH
Confidence 43332222222345678999999999999999999999999999999988899999999999999999999998889999
Q ss_pred hhcceEEEeCC---CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hc-
Q 048242 259 ALCGTSVMLRQ---ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QK- 333 (430)
Q Consensus 259 ~~g~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~- 333 (430)
..|+++++.+. +++..+++.++++++|+++++|+++..++......... ++++|.++++|+++++++.++++ .+
T Consensus 207 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~~G~~l~~~~~~~~~~~~~ 285 (511)
T 3e7w_A 207 QSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDL-LPHADTFMFCGEVLPVSVAKALLERFP 285 (511)
T ss_dssp HTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTT-CTTCCEEEECSSCCCHHHHHHHHHHCT
T ss_pred hcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccccc-CCcccEEEEecCCCCHHHHHHHHHHCC
Confidence 99999999875 68999999999999999999999999999887666666 89999999999999999999998 56
Q ss_pred CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCccc
Q 048242 334 GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVM 413 (430)
Q Consensus 334 ~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~ 413 (430)
++++++.||+||+++.++.+.... .........++|+|++++ +++|+|++ +++++.| +.|||+|+|++++
T Consensus 286 ~~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~v~ 355 (511)
T 3e7w_A 286 KAKIFNTYGPTEATVAVTSVEITN------DVISRSESLPVGFAKPDM-NIFIMDEE-GQPLPEG--EKGEIVIAGPSVS 355 (511)
T ss_dssp TCEEEECCCCGGGSSCSEEEEECH------HHHTTCSSCCCBEECTTC-EEEEECTT-SCBCCTT--CCEEEEEESTTSC
T ss_pred CcEEEeCcccchheeeeeEEeccc------cccccCCcCCCcceeCCC-EEEEECCC-CCCCCCC--CceEEEEecCccC
Confidence 899999999999988776554321 111112346799999999 99999988 9999998 8999999999999
Q ss_pred ccccCCcccchHhh
Q 048242 414 KGYLKNPKANEEAF 427 (430)
Q Consensus 414 ~gY~~~~~~t~~~f 427 (430)
.|||++|++|++.|
T Consensus 356 ~GY~~~~~~t~~~f 369 (511)
T 3e7w_A 356 RGYLGEPELTEKAF 369 (511)
T ss_dssp CCBTTCHHHHHHHE
T ss_pred hhhCCCcccchhhh
Confidence 99999999999998
No 16
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=4.9e-57 Score=449.04 Aligned_cols=358 Identities=16% Similarity=0.203 Sum_probs=299.9
Q ss_pred CCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeee
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLN 98 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~ 98 (430)
..++.++|++.++++|+++|+++.++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|++++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 117 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYV 117 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhh
Q 048242 99 CINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKL 178 (430)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (430)
|++|.++.+++.++++.++++++|++.+....+.. .. ....+..++....
T Consensus 118 pl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~----~~-------~~~~~~~~~~~~~------------------- 167 (563)
T 1amu_A 118 PIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN----IQ-------FNGQVEIFEEDTI------------------- 167 (563)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT----SC-------CCSEEEECCCSTT-------------------
T ss_pred EeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhh----cc-------ccCceeeecchhh-------------------
Confidence 99999999999999999999999999876443221 00 1122322221100
Q ss_pred hhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHH
Q 048242 179 LETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l 258 (430)
... .......+..++++++|+|||||||.||||+++|+++.+.+.+....++++.+|++++..|++|..++...+.++
T Consensus 168 -~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 245 (563)
T 1amu_A 168 -KIR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMAL 245 (563)
T ss_dssp -TTS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHH
T ss_pred -ccc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHH
Confidence 000 011111234678999999999999999999999999998888888888999999999999999999988888899
Q ss_pred hhcceEEEeCC---CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHhcCc
Q 048242 259 ALCGTSVMLRQ---ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGF 335 (430)
Q Consensus 259 ~~g~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~ 335 (430)
+.|+++++.+. +++..+++.++++++|+++++|+++..+... . +++||.+++||+++++++.+++++. +
T Consensus 246 ~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~-~~~lr~~~~gG~~l~~~~~~~~~~~-~ 317 (563)
T 1amu_A 246 LTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------R-ILSIQTLITAGSATSPSLVNKWKEK-V 317 (563)
T ss_dssp TTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------T-CCSCSEEEEESSCCCHHHHHHHTTT-S
T ss_pred HCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------c-cccccEEEEEEecCCHHHHHHHHhC-C
Confidence 99999999875 6899999999999999999999998877532 2 7899999999999999999999863 8
Q ss_pred EEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCccccc
Q 048242 336 RVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKG 415 (430)
Q Consensus 336 ~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~g 415 (430)
++++.||+||+++.++.+...+.. .....++|+|++++ +++|+|++ +++++.| +.|||+|+|++++.|
T Consensus 318 ~~~~~YG~TE~~~~~~~~~~~~~~--------~~~~~~vG~p~~~~-~v~i~d~~-~~~~~~g--~~GEl~v~g~~v~~G 385 (563)
T 1amu_A 318 TYINAYGPTETTICATTWVATKET--------IGHSVPIGAPIQNT-QIYIVDEN-LQLKSVG--EAGELCIGGEGLARG 385 (563)
T ss_dssp EEEEEECCGGGSSCSEEEECCSSC--------CCSSCCCBEECTTE-EEEEECTT-SCBCCTT--CEEEEEEEETTCCCE
T ss_pred eEEEEECcCHHhHhheeeeccccc--------CCCCCcccceeCCC-EEEEECCC-cCCCCCC--CcEEEEEechhhChh
Confidence 999999999998776655432210 11346899999999 99999987 9999998 899999999999999
Q ss_pred ccCCcccchHhhh
Q 048242 416 YLKNPKANEEAFA 428 (430)
Q Consensus 416 Y~~~~~~t~~~f~ 428 (430)
||++|++|+++|.
T Consensus 386 Y~~~pe~t~~~f~ 398 (563)
T 1amu_A 386 YWKRPELTSQKFV 398 (563)
T ss_dssp ETTCHHHHHHHEE
T ss_pred hCCCchhhhhhcc
Confidence 9999999999994
No 17
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=2.5e-57 Score=454.88 Aligned_cols=359 Identities=16% Similarity=0.188 Sum_probs=302.2
Q ss_pred CCCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC
Q 048242 16 NFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA 95 (430)
Q Consensus 16 ~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 95 (430)
.....++.++|+++++++|+++|+++.++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|+
T Consensus 23 ~~~~~tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa 102 (620)
T 4dg8_A 23 LYAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGH 102 (620)
T ss_dssp GGGSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCC
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccch
Q 048242 96 VLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEY 175 (430)
Q Consensus 96 ~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (430)
+++|++|.++.+++.++++.+++++++++....... .....+.+...
T Consensus 103 ~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~---------------~~~~~~~~~~~------------------ 149 (620)
T 4dg8_A 103 HYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA---------------NGLPCVPVRHL------------------ 149 (620)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC---------------TTSCEEEGGGC------------------
T ss_pred EEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc---------------cCCceeeeccC------------------
Confidence 999999999999999999999999999765321100 00011111000
Q ss_pred hhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHH
Q 048242 176 EKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTW 255 (430)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~ 255 (430)
. ............++++++|+|||||||.||||+++|+++.+.+.+ ...+++..+++++...|++|..++..++
T Consensus 150 ----~-~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~ 223 (620)
T 4dg8_A 150 ----P-AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIW 223 (620)
T ss_dssp ----C-CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHH
T ss_pred ----C-cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHH
Confidence 0 001111112346899999999999999999999999999776655 4567888999999999999999999999
Q ss_pred HHHhhcceEEEeC--CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-h
Q 048242 256 SLAALCGTSVMLR--QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-Q 332 (430)
Q Consensus 256 ~~l~~g~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~ 332 (430)
.+++.|+++++.+ .+++..+++.|+++++|+++++|++++.+.+... .. +++||.+++||+++++++.+++. .
T Consensus 224 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~---~~-l~~lr~v~~gGe~l~~~~~~~~~~~ 299 (620)
T 4dg8_A 224 GALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP---DC-LGGLRQLLTGGDILSVPHVRRALLR 299 (620)
T ss_dssp HHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG---GG-GTTCSEEEEESSCCCHHHHHHHHHH
T ss_pred HHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh---hh-CCCccEEEEEeCcCCHHHHHHHHHh
Confidence 9999999999974 5899999999999999999999999999987533 23 88999999999999998888886 4
Q ss_pred c-CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCC-CCCCCCceeEEEEecC
Q 048242 333 K-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQP-IPADGKTIGEVVMRGN 410 (430)
Q Consensus 333 ~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~-~~~~~~~~Gel~v~g~ 410 (430)
+ ++++++.||+||+++.++.+.... ........++|+|++++ +++|+|++ +++ ++.| ++|||+|+|+
T Consensus 300 ~~~~~l~n~YG~TE~~~~~~~~~~~~-------~~~~~~~~~iG~p~~~~-~~~i~d~~-~~~~~~~g--~~GEl~i~G~ 368 (620)
T 4dg8_A 300 HPRLHLVNGYGPTENTTFTCCHVVTD-------DDLEEDDIPIGKAIAGT-AVLLLDEH-GQEIAEPD--RAGEIVAFGA 368 (620)
T ss_dssp CTTCEEEEEECCGGGCSCSEEEECCT-------GGGGSSSCCCBEECTTE-EEEEECTT-SCBCCSSS--CCEEEEEEET
T ss_pred CCCeEEEeeEchhhhhhheEEEeccc-------cccCCCCCCceecccCc-EEEEECcc-CCCCCCCC--CceEEEEecc
Confidence 4 899999999999987776554321 22223457899999999 99999998 665 7777 8999999999
Q ss_pred cccccccCCcccchHhhh
Q 048242 411 MVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 411 ~v~~gY~~~~~~t~~~f~ 428 (430)
++++|||++|++|+++|.
T Consensus 369 ~v~~GY~~~p~~t~~~f~ 386 (620)
T 4dg8_A 369 GLAQGYRNDAARTRASFV 386 (620)
T ss_dssp TCCSEETTCHHHHHHHEE
T ss_pred ccccccCCChhhhhhhhc
Confidence 999999999999999994
No 18
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.4e-56 Score=440.96 Aligned_cols=360 Identities=22% Similarity=0.285 Sum_probs=299.2
Q ss_pred CCHHHHHHHHHhhCCCcceEEEC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCee
Q 048242 20 LTPLWFLERAATVHPTRKSVVYE--SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVL 97 (430)
Q Consensus 20 ~t~~~~l~~~~~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 97 (430)
.++.++|+++++++|+++|+++. ++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 57999999999999999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCChhhHHHHHhhcCceEEEe--ccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccch
Q 048242 98 NCINFRLNPLNVAIILGHAEAALVFV--DQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEY 175 (430)
Q Consensus 98 ~~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (430)
+|++|.++.+++.++++.++++++++ +.+....+. .... . ..++.++
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~-------~-~~~~~~~-------------------- 130 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIF---QSGS-------G-ARIIFLG-------------------- 130 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHH---HHCC-------C-CEEEEGG--------------------
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhh---hccc-------c-ceeEEec--------------------
Confidence 99999999999999999999999999 665433221 1111 1 1122221
Q ss_pred hhhhhcC----CCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCC--CCCCEEEeccCchhhh
Q 048242 176 EKLLETG----DPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGM--KEGAVYLWTLPIFHGN 249 (430)
Q Consensus 176 ~~~~~~~----~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~--~~~~~~~~~~pl~h~~ 249 (430)
++.... ...........++++++|+|||||||.||||+++|+++.+.+.+....+++ ..++++++.+|++|.+
T Consensus 131 -~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 209 (504)
T 1t5h_X 131 -DLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVV 209 (504)
T ss_dssp -GTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHH
T ss_pred -chhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcc
Confidence 111110 000111133567899999999999999999999999999888888777888 8899999999999999
Q ss_pred hhH-HHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCC--CCCCCCCceeEEeecCCCCCHHH
Q 048242 250 GWC-FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE--DTILPLPHVVNVNTGGSPPPPPI 326 (430)
Q Consensus 250 gl~-~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~--~~~~~l~~lr~v~~~G~~l~~~~ 326 (430)
++. .++.++..|+++++.+.+++..+++.|+++++|+++++|++++.+.+.... ...+ +++||.+++||+++++++
T Consensus 210 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-l~~lr~~~~gG~~l~~~~ 288 (504)
T 1t5h_X 210 GFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK-LDSLRHVTFAGATMPDAV 288 (504)
T ss_dssp HHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCC-CTTCCEEEECCTTCCHHH
T ss_pred hHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccccccc-CccccEEEEcCCcCCHHH
Confidence 985 578888999999999999999999999999999999999999999876422 2334 899999999999999999
Q ss_pred HHHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCC---CCCCCCCCce
Q 048242 327 LLAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTN---QPIPADGKTI 402 (430)
Q Consensus 327 ~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~---~~~~~~~~~~ 402 (430)
.++++ .++.++++.||+||++ .+.... . ...+++|+|.+++ +++|+|++ + ++++.| +.
T Consensus 289 ~~~~~~~~~~~~~~~YG~TE~~-~~~~~~-~------------~~~~~~g~p~~~~-~~~i~~~~-~~~~~~~~~g--~~ 350 (504)
T 1t5h_X 289 LETVHQHLPGEKVNIYGTTEAM-NSLYMR-Q------------PKTGTEMAPGFFS-EVRIVRIG-GGVDEIVANG--EE 350 (504)
T ss_dssp HHHHHHHCCSEEEEEEEETTTE-EEEEEE-S------------CSSSSEEBCCTTC-CEEEECTT-SCTTCBCCTT--CC
T ss_pred HHHHHHhcCcceeeeecccccc-cccccc-C------------CCCCccccCCCCC-ceeEEecc-CCCCCcCCCC--Cc
Confidence 99998 5699999999999993 222211 1 1347899999999 99999987 6 899988 89
Q ss_pred eEEEEe-cCcccccccCCcccchHhhhCC
Q 048242 403 GEVVMR-GNMVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 403 Gel~v~-g~~v~~gY~~~~~~t~~~f~dg 430 (430)
|||+|+ |++++.|||++|++|+++|.||
T Consensus 351 GEl~v~gg~~~~~GY~~~~~~t~~~f~~g 379 (504)
T 1t5h_X 351 GELIVAASDSAFVGYLNQPQATAEKLQDG 379 (504)
T ss_dssp EEEEEECCTTSCCCBTTCHHHHHHHEETT
T ss_pred ceEEEeCCceeeceecCCchhhhhhhcCC
Confidence 999999 9999999999999999999765
No 19
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=2.9e-57 Score=452.07 Aligned_cols=359 Identities=22% Similarity=0.254 Sum_probs=302.3
Q ss_pred CCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCee
Q 048242 18 TALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVL 97 (430)
Q Consensus 18 ~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 97 (430)
...++.++|+++++++|+++|+++.++++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|+++
T Consensus 73 ~~~~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 152 (570)
T 4gr5_A 73 AGACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGY 152 (570)
T ss_dssp CSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred ccCCHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhh
Q 048242 98 NCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEK 177 (430)
Q Consensus 98 ~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (430)
+|++|.++.+++.++++.++++++|++.+....+ .....+.+.+..
T Consensus 153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~---------------~~~~~~~~~~~~------------------- 198 (570)
T 4gr5_A 153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL---------------TGTTTLYVEDEA------------------- 198 (570)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS---------------CSSEEEECCC---------------------
T ss_pred EEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc---------------cCCcceeeeccc-------------------
Confidence 9999999999999999999999999987542210 111112111110
Q ss_pred hhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHH
Q 048242 178 LLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSL 257 (430)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~ 257 (430)
..............++++++|+|||||||.||||+++|+++.+.+.. ...++++.+|++++.+|++|..+...++.+
T Consensus 199 --~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 275 (570)
T 4gr5_A 199 --ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGA 275 (570)
T ss_dssp -------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHH
T ss_pred --cccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHH
Confidence 00011111123456899999999999999999999999999766544 445678899999999999988777778889
Q ss_pred HhhcceEEEeC--CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hc-
Q 048242 258 AALCGTSVMLR--QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QK- 333 (430)
Q Consensus 258 l~~g~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~- 333 (430)
++.|+++++.+ .+++..+++.|+++++|+++++|+++..+.+.... . +++||.+++||+++++++.++++ .+
T Consensus 276 l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---~-~~~lr~~~~gG~~l~~~~~~~~~~~~~ 351 (570)
T 4gr5_A 276 LLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE---A-FEGVRYAITGGEPASVPHVAKARRDHP 351 (570)
T ss_dssp HTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG---G-GTTCSEEEEESSCCCHHHHHHHHHHCT
T ss_pred HhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh---h-CCCceEEEEecccCCHHHHHHHHHhCC
Confidence 99999999986 47899999999999999999999999999976532 3 88999999999999999999888 55
Q ss_pred CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCccc
Q 048242 334 GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVM 413 (430)
Q Consensus 334 ~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~ 413 (430)
++++++.||+||++++++.+.... ........++|+|++++ +++|+|++ +++++.| ++|||+|+|++++
T Consensus 352 ~~~l~~~YG~TE~~~~~~~~~~~~-------~~~~~~~~~iG~p~~~~-~v~i~d~~-~~~~~~G--~~GEl~v~g~~v~ 420 (570)
T 4gr5_A 352 ALRLGNGYGPAESMGFTTHHAVVA-------GDLSGTALPIGVPLAGK-RAYVLDDD-LKPAANG--ALGELYVAGAGLA 420 (570)
T ss_dssp TCEEEEEECCGGGCSCSEEEECCG-------GGTTSSSCCCBEECTTE-EEEEECTT-SCBCCTT--CEEEEEEEETTCC
T ss_pred CcEEEEeechhhheeeeeeeeecc-------cccCCCccccceeeCCC-EEEEECCC-CCCCCCC--CcEEEEEeecccc
Confidence 899999999999988776554321 11123346799999999 99999988 9999998 9999999999999
Q ss_pred ccccCCcccchHhhh
Q 048242 414 KGYLKNPKANEEAFA 428 (430)
Q Consensus 414 ~gY~~~~~~t~~~f~ 428 (430)
.|||+++++|+++|.
T Consensus 421 ~GY~~~~~~t~~~f~ 435 (570)
T 4gr5_A 421 HGYVSRPALTAERFV 435 (570)
T ss_dssp CEETTCHHHHHHHEE
T ss_pred hhcCCCchhhhcccc
Confidence 999999999999983
No 20
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.8e-56 Score=445.54 Aligned_cols=375 Identities=17% Similarity=0.238 Sum_probs=311.5
Q ss_pred CCHHHHHHHHHhh-----CCCcceEEEC-----CeeeeHHHHHHHHHHHHHHHHHc-CCCCCCeEEEEcCCchhHHHHHH
Q 048242 20 LTPLWFLERAATV-----HPTRKSVVYE-----SKHYTWQQTYQRCRRLASALSQL-SIGPGTAVSVLSPNVPAMYEVHF 88 (430)
Q Consensus 20 ~t~~~~l~~~~~~-----~p~~~a~~~~-----~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~~~~~~~l 88 (430)
.++.++|++.++. +|+++|+++. ++++||+||.++++++|+.|.+. |+++||+|+|+++|++++++++|
T Consensus 38 ~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~l 117 (570)
T 3c5e_A 38 NFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVIL 117 (570)
T ss_dssp CHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHH
T ss_pred cHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3567899999998 9999999972 37899999999999999999998 99999999999999999999999
Q ss_pred HhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccc
Q 048242 89 GVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYAL 168 (430)
Q Consensus 89 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (430)
||+++|++++|++|.++.+++.++++.++++++|++.+....+.......+ ....++.+++...
T Consensus 118 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~--------- 181 (570)
T 3c5e_A 118 GCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECP-------SLRIKLLVSEKSC--------- 181 (570)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCT-------TCCEEEEESSSCC---------
T ss_pred HHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCC-------ceeEEEEecccCc---------
Confidence 999999999999999999999999999999999999887665554332222 3445555554211
Q ss_pred cCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHH-HHHHHHhhcCCCCCCEEEeccCchh
Q 048242 169 SKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYL-MSLNVVLTWGMKEGAVYLWTLPIFH 247 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~-~~~~~~~~~~~~~~~~~~~~~pl~h 247 (430)
.+...+.+++........ .....++++++|+|||||||.||||+++|+.+.. ..... ..+++..+|++++..|++|
T Consensus 182 -~~~~~~~~~~~~~~~~~~-~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~ 258 (570)
T 3c5e_A 182 -DGWLNFKKLLNEASTTHH-CVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQASDIMWTISDTGW 258 (570)
T ss_dssp -TTSEEHHHHHHHSCSCCC-CCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCTTCEEEECCCTTS
T ss_pred -cccccHHHHhhccccccc-ccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCCCceEEEcCchHH
Confidence 123456665544332211 1345678999999999999999999999994332 33444 6678899999999999999
Q ss_pred hhhhH-HHHHHHhhcceEEEeC--CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCH
Q 048242 248 GNGWC-FTWSLAALCGTSVMLR--QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPP 324 (430)
Q Consensus 248 ~~gl~-~~~~~l~~g~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~ 324 (430)
.+++. .++.++..|+++++.+ .+++..+++.|+++++|+++++|++++.+.+.. ....+ +++||.+++||+++++
T Consensus 259 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~-~~~lr~i~~gGe~l~~ 336 (570)
T 3c5e_A 259 ILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYK-FPHLQNCVTVGESLLP 336 (570)
T ss_dssp HHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCC-CTTCCEEEEESSCCCH
T ss_pred HHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccc-cccceEEEEcCCcCCH
Confidence 99987 5778888999999986 689999999999999999999999999999873 22334 8999999999999999
Q ss_pred HHHHHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCcee
Q 048242 325 PILLAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIG 403 (430)
Q Consensus 325 ~~~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~G 403 (430)
++.++++ .+++++++.||+||++..++..... ....+++|+|++++ +++|+|++ +++++.| +.|
T Consensus 337 ~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~~-~v~i~d~~-g~~~~~G--~~G 401 (570)
T 3c5e_A 337 ETLENWRAQTGLDIRESYGQTETGLTCMVSKTM-----------KIKPGYMGTAASCY-DVQIIDDK-GNVLPPG--TEG 401 (570)
T ss_dssp HHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS-----------CCCTTCCCEECTTC-CEEEECTT-SCBCCTT--CCE
T ss_pred HHHHHHHHHhCCchhhccchhhcccceecCccc-----------ccCCCcccccCCCc-eEEEECCC-CCCCCCC--CCC
Confidence 9999998 5799999999999998655443211 12347899999999 99999988 9999998 899
Q ss_pred EEEEe-----cCcccccccCCcccchHhhhCC
Q 048242 404 EVVMR-----GNMVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 404 el~v~-----g~~v~~gY~~~~~~t~~~f~dg 430 (430)
||+|+ |++++.|||++|++|.+.|.||
T Consensus 402 El~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~ 433 (570)
T 3c5e_A 402 DIGIRVKPIRPIGIFSGYVDNPDKTAANIRGD 433 (570)
T ss_dssp EEEEECSSBCCTTCCCEETTCHHHHHHTEETT
T ss_pred eeEEeccCCCCchhhccccCChhHhhhhhcCC
Confidence 99999 9999999999999999998654
No 21
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=2.1e-56 Score=449.77 Aligned_cols=375 Identities=20% Similarity=0.263 Sum_probs=314.6
Q ss_pred CCCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC
Q 048242 16 NFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA 95 (430)
Q Consensus 16 ~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 95 (430)
.+...++.++|+++++ |+++|+++.++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|+
T Consensus 23 ~~~~~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~ 100 (617)
T 3rg2_A 23 YWQDLPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGV 100 (617)
T ss_dssp SCCCCCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTC
T ss_pred CCCcCCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCe
Confidence 3557889999999887 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChhhHHHHHhhcCceEEEeccccH-----HHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccC
Q 048242 96 VLNCINFRLNPLNVAIILGHAEAALVFVDQQYF-----ALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSK 170 (430)
Q Consensus 96 ~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (430)
+++|++|.++.+++.++++.+++++++++.+.. ........... ....+...++..
T Consensus 101 ~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~------------ 161 (617)
T 3rg2_A 101 APVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHS-------SIRVVQLLNDSG------------ 161 (617)
T ss_dssp EEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHST-------TCCEEEEETCCS------------
T ss_pred EEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCC-------ccceeeeccccc------------
Confidence 999999999999999999999999999987653 22333333222 334444444321
Q ss_pred CccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhh
Q 048242 171 GVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNG 250 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~g 250 (430)
...+.+......... ...+..++++++|+|||||||.||||+++|+++.+.+.+....+++..++++++.+|++|.++
T Consensus 162 -~~~~~~~~~~~~~~~-~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 239 (617)
T 3rg2_A 162 -EHNLQDAINHPAEDF-TATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYA 239 (617)
T ss_dssp -TTBHHHHHHSCCSSC-CCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHH
T ss_pred -ccchhhhhccccccc-CCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhh
Confidence 123333333322221 123456789999999999999999999999999999999988999999999999999999988
Q ss_pred hH--HHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCC--CCCCCCceeEEeecCCCCCHHH
Q 048242 251 WC--FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPED--TILPLPHVVNVNTGGSPPPPPI 326 (430)
Q Consensus 251 l~--~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~--~~~~l~~lr~v~~~G~~l~~~~ 326 (430)
+. ..+.+++.|+++++.+.+++..+++.++++++|+++++|+++..+.+..... ..+ +++||.+++||+++++++
T Consensus 240 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-l~~lr~i~~gGe~l~~~~ 318 (617)
T 3rg2_A 240 MSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQ-LASLKLLQVGGARLSATL 318 (617)
T ss_dssp HHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTT-TTTCCEEEEESSCCCHHH
T ss_pred hhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccccc-CCCccEEEEcCCcCCHHH
Confidence 77 4888899999999999899999999999999999999999999988643222 124 899999999999999999
Q ss_pred HHHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCcc-ccccceEEeeCCCCCCCCCCCCceeE
Q 048242 327 LLAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKC-MCLEGLDVLDTKTNQPIPADGKTIGE 404 (430)
Q Consensus 327 ~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~-~~~~~~~v~d~~~~~~~~~~~~~~Ge 404 (430)
.+++. .+++++++.||+||++..++.... .......++|+|+ +++ +++|+|++ +++++.| ++||
T Consensus 319 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~----------~~~~~~~~~G~p~~~~~-~~~i~d~~-~~~~p~G--~~GE 384 (617)
T 3rg2_A 319 AARIPAEIGCQLQQVFGMAEGLVNYTRLDD----------SAEKIIHTQGYPMCPDD-EVWVADAE-GNPLPQG--EVGR 384 (617)
T ss_dssp HHHHHHHTCSEEEEEEEETTEEEEECCTTS----------CHHHHHHCCCEESCTTC-EEEEECTT-SCBCCTT--CCEE
T ss_pred HHHHHHHhCCcEEEEeccCcceeecccCCC----------cccccccCCCccCCCCc-eEEEECCC-CCCCCCC--CceE
Confidence 99998 669999999999998755443211 1123456899997 677 89999987 9999999 8999
Q ss_pred EEEecCcccccccCCcccchHhhh
Q 048242 405 VVMRGNMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 405 l~v~g~~v~~gY~~~~~~t~~~f~ 428 (430)
|+|+|+++++|||++|++|+++|.
T Consensus 385 l~i~G~~v~~GY~~~p~~t~~~f~ 408 (617)
T 3rg2_A 385 LMTRGPYTFRGYYKSPQHNASAFD 408 (617)
T ss_dssp EEEECSSSCSCCTTCHHHHHHHBC
T ss_pred EEecCccccchhcCChhhhhhccC
Confidence 999999999999999999999993
No 22
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=5.6e-56 Score=438.83 Aligned_cols=365 Identities=17% Similarity=0.185 Sum_probs=305.9
Q ss_pred CCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCee
Q 048242 18 TALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVL 97 (430)
Q Consensus 18 ~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 97 (430)
...++.++|++.++++|+++|+.+.++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 81 (521)
T 3l8c_A 2 SLKDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAY 81 (521)
T ss_dssp CCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCE
T ss_pred cHHHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhh
Q 048242 98 NCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEK 177 (430)
Q Consensus 98 ~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (430)
+|++|.++.+++.++++.++++++|++.+....+ ....++.+. .+.+
T Consensus 82 vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~---------------~~~~~~~~~------------------~~~~ 128 (521)
T 3l8c_A 82 IPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI---------------EGISLVSLS------------------EIES 128 (521)
T ss_dssp EEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC---------------TTSEEEEHH------------------HHHH
T ss_pred EecCccccHHHHHHHHHhCCCCEEEecCcccccc---------------ccCcccchh------------------hhhh
Confidence 9999999999999999999999999987542100 001111110 0111
Q ss_pred hhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhh--cCCCCCCEEEeccCchhhhhhHHHH
Q 048242 178 LLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLT--WGMKEGAVYLWTLPIFHGNGWCFTW 255 (430)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~--~~~~~~~~~~~~~pl~h~~gl~~~~ 255 (430)
......+ ........++++++|+|||||||.||+|+++|+++.+.+.+.... +++..++++++..|++|..++...+
T Consensus 129 ~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 207 (521)
T 3l8c_A 129 AKLAEMP-YERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWA 207 (521)
T ss_dssp HHHHTCC-CCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHH
T ss_pred cccccCC-cccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHH
Confidence 1111111 111234578999999999999999999999999999887777665 6778999999999999999988888
Q ss_pred HHHhhcceEEEeCCC---CHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-
Q 048242 256 SLAALCGTSVMLRQA---SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS- 331 (430)
Q Consensus 256 ~~l~~g~~~v~~~~~---~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~- 331 (430)
.++..|+++++.+.+ ++..+++.+.++++|+++++|+++..+.........+ +++||.+++||+++++++.+++.
T Consensus 208 ~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~l~~~~~~~~~~ 286 (521)
T 3l8c_A 208 PTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAK-MPALTHFYFDGEELTVSTARKLFE 286 (521)
T ss_dssp HHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTT-CTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcccccc-CccceEEEEecccCCHHHHHHHHH
Confidence 889999999998754 8999999999999999999999999998877665566 89999999999999999999998
Q ss_pred hc-CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecC
Q 048242 332 QK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGN 410 (430)
Q Consensus 332 ~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~ 410 (430)
.+ ++++++.||+||+++.++.+.... .........++|+|++++ +++|+|++ +++++.| +.|||+|+|+
T Consensus 287 ~~~~~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~~~~~vG~p~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~ 356 (521)
T 3l8c_A 287 RFPSAKIINAYGPTEATVALSAIEITR------EMVDNYTRLPIGYPKPDS-PTYIIDED-GKELSSG--EQGEIIVTGP 356 (521)
T ss_dssp HCTTCEEEEEECCGGGSSCSEEEEECH------HHHHHCSSCEEEEECTTS-CEEEECTT-SCBCCTT--CCEEEEEEST
T ss_pred HCCCceEEeCcCccHHhhhhceeeccc------ccccCCCccccccccCCC-EEEEECCC-cCCCCCC--CceEEEeccc
Confidence 55 899999999999988776654321 111222446899999999 99999987 9999998 8999999999
Q ss_pred cccccccCCcccchHhh
Q 048242 411 MVMKGYLKNPKANEEAF 427 (430)
Q Consensus 411 ~v~~gY~~~~~~t~~~f 427 (430)
+++.|||++|++|++.|
T Consensus 357 ~v~~GY~~~~~~t~~~f 373 (521)
T 3l8c_A 357 AVSKGYLNNPEKTAEAF 373 (521)
T ss_dssp TSCSCBTTCHHHHHHHE
T ss_pred ccChhhcCCchHhhccC
Confidence 99999999999999998
No 23
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2.8e-56 Score=471.05 Aligned_cols=387 Identities=19% Similarity=0.286 Sum_probs=323.8
Q ss_pred CCCHHHHHHHHHhhCCCcceEEEC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYE--SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
..++.++|++.++++|+++|+++. ++++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|++
T Consensus 60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~ 139 (979)
T 3tsy_A 60 HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT 139 (979)
T ss_dssp TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence 579999999999999999999996 689999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchh
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYE 176 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (430)
++|++|.++++++.++++.++++++|++.+....+...... ....++.+++.... ....+...+.
T Consensus 140 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~------~~~~~~~~~~ 204 (979)
T 3tsy_A 140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND---------DGVVIVCIDDNESV------PIPEGCLRFT 204 (979)
T ss_dssp EEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHT---------SCCEEEECCCCTTS------CCCTTEEEGG
T ss_pred EEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhc---------CCceEEEeCCcccc------cCCcccccHH
Confidence 99999999999999999999999999998776555444321 22345555432111 1122334555
Q ss_pred hhhhcCCCC--CCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh----hcCCCCCCEEEeccCchhhhh
Q 048242 177 KLLETGDPE--FAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL----TWGMKEGAVYLWTLPIFHGNG 250 (430)
Q Consensus 177 ~~~~~~~~~--~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~~~~~pl~h~~g 250 (430)
++....... ........++++++|+|||||||.||||+++|+++.+.+..... .+.+..+|++++.+|++|.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 284 (979)
T 3tsy_A 205 ELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYA 284 (979)
T ss_dssp GTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHH
T ss_pred HHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHH
Confidence 554433221 11223467899999999999999999999999999888776554 346788999999999999999
Q ss_pred hH-HHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHH
Q 048242 251 WC-FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLA 329 (430)
Q Consensus 251 l~-~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~ 329 (430)
+. .++.++..|+++++.+.+++..+++.|+++++|+++++|+++..+.+.......+ +++||.+++||+++++++.++
T Consensus 285 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~~~~gg~~l~~~~~~~ 363 (979)
T 3tsy_A 285 LNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYD-LSSIRVVKSGAAPLGKELEDA 363 (979)
T ss_dssp HHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSC-CTTCCEEEESSCCCCSSHHHH
T ss_pred HHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCC-ccceEEEEEcCCCCCHHHHHH
Confidence 86 4677888999999999999999999999999999999999999999887766666 999999999999999999999
Q ss_pred HH-hc-CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEE
Q 048242 330 MS-QK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVM 407 (430)
Q Consensus 330 ~~-~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v 407 (430)
++ .+ ++++++.||+||+++.++.+..... .......+++|+|++++ +++|+|++++++++.| ++|||+|
T Consensus 364 ~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i 434 (979)
T 3tsy_A 364 VNAKFPNAKLGQGYGMTEAGPVLAMSLGFAK------EPFPVKSGACGTVVRNA-EMKIVDPDTGDSLSRN--QPGEICI 434 (979)
T ss_dssp HHHHCTTCEEEECEECGGGCSEEEECGGGSS------SCCCCCTTCCCEECSSC-EEEEECTTSCCBCCTT--CCEEEEE
T ss_pred HHHHCCCCeEEeeechhhhhHHHHhCCCCCC------CccccCCCCcCcccCCc-EEEEEeCCCCCCCCCC--CccEEEE
Confidence 98 56 8999999999999877665422110 01112447899999999 9999998889999998 8999999
Q ss_pred ecCcccccccCCcccchHhh-hCC
Q 048242 408 RGNMVMKGYLKNPKANEEAF-ANG 430 (430)
Q Consensus 408 ~g~~v~~gY~~~~~~t~~~f-~dg 430 (430)
+|++++.|||++|++|++.| .||
T Consensus 435 ~g~~v~~GY~~~p~~t~~~f~~~g 458 (979)
T 3tsy_A 435 RGHQIMKGYLNNPAATAETIDKDG 458 (979)
T ss_dssp ESTTSCSEETTCHHHHHHHBCTTS
T ss_pred ECCCccccccCChhhhhhhccCCC
Confidence 99999999999999999999 443
No 24
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=4.9e-56 Score=449.04 Aligned_cols=384 Identities=18% Similarity=0.219 Sum_probs=312.8
Q ss_pred CCHHHHHHHHHhhCCCcceEEE------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhc
Q 048242 20 LTPLWFLERAATVHPTRKSVVY------ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMT 93 (430)
Q Consensus 20 ~t~~~~l~~~~~~~p~~~a~~~------~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~ 93 (430)
.++.++|+++++.+|+++|+++ .++++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++
T Consensus 76 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 155 (652)
T 1pg4_A 76 NLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARI 155 (652)
T ss_dssp CHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHc
Confidence 3577889999999999999998 2378999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeccccCChhhHHHHHhhcCceEEEeccccH---------HHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcc
Q 048242 94 GAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYF---------ALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPL 164 (430)
Q Consensus 94 G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 164 (430)
|++++|++|.++++++.++++.++++++|+++... ..+.+...... ......++.++.......
T Consensus 156 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~vi~~~~~~~~~~-- 228 (652)
T 1pg4_A 156 GAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPN-----VTSVEHVIVLKRTGSDID-- 228 (652)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTT-----CCSCCEEEEECSSCCCCC--
T ss_pred CcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCC-----cCCCCEEEEEeCCCCccc--
Confidence 99999999999999999999999999999987542 22332221110 012355666654321100
Q ss_pred cccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHH-HHHhhcCCCCCCEEEecc
Q 048242 165 EYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSL-NVVLTWGMKEGAVYLWTL 243 (430)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 243 (430)
........|.+++....... ......++++++|+|||||||+||||+++|.++...+. .....++++.+|++++..
T Consensus 229 --~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~ 305 (652)
T 1pg4_A 229 --WQEGRDLWWRDLIEKASPEH-QPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTA 305 (652)
T ss_dssp --CCBTTEEEHHHHHTTSCSCC-CCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECS
T ss_pred --ccCCCceeHHHHHhhcCCCC-CccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEcc
Confidence 01112345777665433221 12345678999999999999999999999999876654 445567899999999999
Q ss_pred Cchhhhhh-HHHHHHHhhcceEEEeCC----CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCC--CCCCCCCCceeEEe
Q 048242 244 PIFHGNGW-CFTWSLAALCGTSVMLRQ----ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPP--EDTILPLPHVVNVN 316 (430)
Q Consensus 244 pl~h~~gl-~~~~~~l~~g~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~--~~~~~~l~~lr~v~ 316 (430)
|++|++|+ ..++.+++.|+++++.+. +++..+++.|+++++|+++++|++++.+.+... ....+ +++||.++
T Consensus 306 ~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~sLr~i~ 384 (652)
T 1pg4_A 306 DVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTD-RSSLRILG 384 (652)
T ss_dssp CTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCC-CTTCCEEE
T ss_pred CCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCC-cCceEEEE
Confidence 99999998 457889999999999864 589999999999999999999999999998654 23345 89999999
Q ss_pred ecCCCCCHHHHHHHH-hcC---cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCC
Q 048242 317 TGGSPPPPPILLAMS-QKG---FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTN 392 (430)
Q Consensus 317 ~~G~~l~~~~~~~~~-~~~---~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~ 392 (430)
+||+++++++.++++ .+| +++++.||+||+++.++...... ...+.+++|+|++++ +++|+|++ |
T Consensus 385 ~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~---------~~~~~~s~G~p~~g~-~v~i~d~~-g 453 (652)
T 1pg4_A 385 SVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA---------IELKAGSATRPFFGV-QPALVDNE-G 453 (652)
T ss_dssp EESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTT---------CCBCTTCCBSBCTTC-CEEEECTT-C
T ss_pred EecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCC---------cCccCCccccCcCCC-eEEEECCC-C
Confidence 999999999999998 567 89999999999987766543211 112458999999999 99999988 9
Q ss_pred CCCCCCCCceeEEEEec--CcccccccCCcccchHhh
Q 048242 393 QPIPADGKTIGEVVMRG--NMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 393 ~~~~~~~~~~Gel~v~g--~~v~~gY~~~~~~t~~~f 427 (430)
++++.| +.|||+|+| |+++.|||+|++.+.+.|
T Consensus 454 ~~v~~g--~~GEl~i~g~~p~~~~gY~~~~e~~~~~~ 488 (652)
T 1pg4_A 454 HPQEGA--TEGNLVITDSWPGQARTLFGDHERFEQTY 488 (652)
T ss_dssp CBCCSS--EEEEEEECSCCTTCCCEETTCHHHHHHHH
T ss_pred CCcCCC--ceEEEEEccCCCchhhhhcCCHHHHHhhh
Confidence 999988 899999999 799999999999988776
No 25
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=2.7e-55 Score=443.80 Aligned_cols=385 Identities=16% Similarity=0.200 Sum_probs=312.4
Q ss_pred CCHHHHHHHHHhhCCCcceEEE------CCeeeeHHHHHHHHHHHHHHHH-HcCCCCCCeEEEEcCCchhHHHHHHHhhh
Q 048242 20 LTPLWFLERAATVHPTRKSVVY------ESKHYTWQQTYQRCRRLASALS-QLSIGPGTAVSVLSPNVPAMYEVHFGVPM 92 (430)
Q Consensus 20 ~t~~~~l~~~~~~~p~~~a~~~------~~~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 92 (430)
.++.++|+++++.+|+++|+++ ..+++||+||.++++++|+.|. ++|+++||+|+|+++|++++++++|||++
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~ 161 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR 161 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 4678899999999999999998 2478999999999999999999 99999999999999999999999999999
Q ss_pred cCCeeeeccccCChhhHHHHHhhcCceEEEeccccHH---------HHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCc
Q 048242 93 TGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFA---------LAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAP 163 (430)
Q Consensus 93 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (430)
+|++++|++|.++.+++.+++++++++++|+++.... .+.+.....+ ....++.++........
T Consensus 162 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~vi~~~~~~~~~~~ 234 (663)
T 1ry2_A 162 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETP-------GVRHVLVYRKTNNPSVA 234 (663)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCT-------TCCEEEEECSSCCSSCC
T ss_pred cCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCC-------CCceEEEEecCCCCccc
Confidence 9999999999999999999999999999999876421 2222211111 34566666543210000
Q ss_pred ccccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHH-HHHhhcCCCCCCEEEec
Q 048242 164 LEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSL-NVVLTWGMKEGAVYLWT 242 (430)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~~~~~~~ 242 (430)
........|.+++...... .......++++++|+|||||||+||||+++|.++...+. .....+++..+|++++.
T Consensus 235 ---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~ 310 (663)
T 1ry2_A 235 ---FHAPRDLDWATEKKKYKTY-YPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTA 310 (663)
T ss_dssp ---CCSSSEEEHHHHHTTSCSC-CCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEEC
T ss_pred ---cCCCccccHHHHHhhcCCC-CCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEc
Confidence 0112234566666543322 122345679999999999999999999999999876654 44556789999999999
Q ss_pred cCchhhhhhH-HHHHHHhhcceEEEeCC----CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCC--CCCCCCCceeEE
Q 048242 243 LPIFHGNGWC-FTWSLAALCGTSVMLRQ----ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE--DTILPLPHVVNV 315 (430)
Q Consensus 243 ~pl~h~~gl~-~~~~~l~~g~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~--~~~~~l~~lr~v 315 (430)
.|++|+.|.. .++.+++.|+++++++. +++..+++.|+++++|+++++|++++.+.+.... ...+ +++||.+
T Consensus 311 ~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~-l~sLr~i 389 (663)
T 1ry2_A 311 GDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHS-LKSLRCL 389 (663)
T ss_dssp SCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCC-CTTCCEE
T ss_pred CCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCC-cCceEEE
Confidence 9999999984 57888999999999864 5899999999999999999999999999886542 2345 8999999
Q ss_pred eecCCCCCHHHHHHHH-hcC---cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCC
Q 048242 316 NTGGSPPPPPILLAMS-QKG---FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKT 391 (430)
Q Consensus 316 ~~~G~~l~~~~~~~~~-~~~---~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~ 391 (430)
+++|+++++++.++++ .+| +++++.||+||+++.++.+..... ...+.+++|+|++++ +++|+|+++
T Consensus 390 ~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~--------~~~~~gs~G~p~~g~-~v~i~d~~~ 460 (663)
T 1ry2_A 390 GSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGV--------TPMKPGSASFPFFGI-DAVVLDPNT 460 (663)
T ss_dssp EECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTC--------CCCCTTCCCEECTTC-CEEEECSSS
T ss_pred EEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCC--------cccCCCccccCcCCC-eEEEEcCCC
Confidence 9999999999999998 567 899999999999877665432110 012458999999999 999999945
Q ss_pred CCCCCC-CCCceeEEEEec--CcccccccCCcccchHhh
Q 048242 392 NQPIPA-DGKTIGEVVMRG--NMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 392 ~~~~~~-~~~~~Gel~v~g--~~v~~gY~~~~~~t~~~f 427 (430)
|++++. | +.|||+++| |+++.|||+|++++.+.|
T Consensus 461 g~~v~~~g--~~Gel~i~g~~p~~~~gy~~~~~~~~~~~ 497 (663)
T 1ry2_A 461 GEELNTSH--AEGVLAVKAAWPSFARTIWKNHDRYLDTY 497 (663)
T ss_dssp TTCEECSS--CEEEEEESSCCTTSCCEETTCHHHHHHHH
T ss_pred CCcCCCCC--cceEEEEecCCCchhcccccChHHHHHhh
Confidence 999988 6 899999999 589999999999998887
No 26
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.9e-55 Score=431.63 Aligned_cols=368 Identities=17% Similarity=0.219 Sum_probs=295.6
Q ss_pred CCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeee
Q 048242 20 LTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNC 99 (430)
Q Consensus 20 ~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 99 (430)
+|+.++|+++++++|+++|+++.++++||+||.++++++|+.|.++ +||+|+++++|++++++++|||+++|++++|
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 77 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAM 77 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence 3677899999999999999999999999999999999999999986 8999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCc---ccccccCCccc--
Q 048242 100 INFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAP---LEYALSKGVTE-- 174 (430)
Q Consensus 100 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~-- 174 (430)
++|.++.+++.++++.++++++|++.+..... ..++...+....... ...........
T Consensus 78 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (501)
T 3ipl_A 78 INTRLTPNEMTNQMRSIDVQLIFCTLPLELRG-----------------FQIVSLDDIEFAGRDITTNGLLDNTMGIQYD 140 (501)
T ss_dssp CCTTSCHHHHHHHHHHTTCCEEEESSCCCCTT-----------------SEEEETTC-----------------------
T ss_pred cCccCCHHHHHHHHHhcCCCEEEEcccccccc-----------------ccccccccceeeeeecccccccccccccccc
Confidence 99999999999999999999999987643211 111111000000000 00000000000
Q ss_pred --hhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhH
Q 048242 175 --YEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWC 252 (430)
Q Consensus 175 --~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~ 252 (430)
...................++++++|+|||||||.||+|+++|+++.+.+.+....+++..+|++++.+|++|.+|+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~ 220 (501)
T 3ipl_A 141 TSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLS 220 (501)
T ss_dssp ---------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHH
T ss_pred cchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHH
Confidence 001111111111112345789999999999999999999999999999999888889999999999999999999999
Q ss_pred HHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHh
Q 048242 253 FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQ 332 (430)
Q Consensus 253 ~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~ 332 (430)
.++.+++.|+++++.+.+++..+++.++++++|+++++|++++.+.+..... ..+||.+++||+++++++.+++++
T Consensus 221 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----~~~lr~i~~gG~~l~~~~~~~~~~ 296 (501)
T 3ipl_A 221 VLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHE----PYNLQKILLGGAKLSATMIETALQ 296 (501)
T ss_dssp HHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCS----CTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCC----cCcccEEEEeCCCCCHHHHHHHHH
Confidence 9889999999999999999999999999999999999999999999876443 338999999999999999999998
Q ss_pred cCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcc
Q 048242 333 KGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMV 412 (430)
Q Consensus 333 ~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v 412 (430)
+++++++.||+||+++.++... ........+++|+|++++ +++|+|++ .+ +.|||+|+|+++
T Consensus 297 ~~~~~~~~YG~TE~~~~~~~~~---------~~~~~~~~~~~G~p~~~~-~~~i~d~~------~~--~~GEl~v~g~~~ 358 (501)
T 3ipl_A 297 YNLPIYNSFGMTETCSQFLTAT---------PEMLHARPDTVGMPSANV-DVKIKNPN------KE--GHGELMIKGANV 358 (501)
T ss_dssp TTCCEEEEEEEGGGTEEEEEEC---------HHHHHHCTTCCBEECTTC-EEEEESCC------SS--CCEEEEEESTTS
T ss_pred hCCCEeccccccccccceeecC---------ccccccCCCCCCCCCCCc-EEEEecCC------CC--CccEEEEeccch
Confidence 8999999999999976655432 222334568899999999 99999986 23 679999999999
Q ss_pred cccccCCcccchHhhhCC
Q 048242 413 MKGYLKNPKANEEAFANG 430 (430)
Q Consensus 413 ~~gY~~~~~~t~~~f~dg 430 (430)
+.|||++++.|.+ |.||
T Consensus 359 ~~gY~~~~~~t~~-~~~g 375 (501)
T 3ipl_A 359 MNGYLYPTDLTGT-FENG 375 (501)
T ss_dssp CSCCSBSTTCCCS-EETT
T ss_pred hhhhCcChhhcch-hcCC
Confidence 9999999999876 6554
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.7e-55 Score=442.12 Aligned_cols=380 Identities=18% Similarity=0.160 Sum_probs=305.9
Q ss_pred CCCCCHHHHHHHHHhhCCCcceEEEC----CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhh
Q 048242 17 FTALTPLWFLERAATVHPTRKSVVYE----SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPM 92 (430)
Q Consensus 17 ~~~~t~~~~l~~~~~~~p~~~a~~~~----~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 92 (430)
....++.++|++.++.+|+++|+++. ++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~ 87 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLY 87 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHH
Confidence 45679999999999999999999874 48999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccC---ChhhHHHHHhhcCceEEEeccccHHHHHHHH-HHhhccCCCCCCCCeEEEecCCCCCCCcccccc
Q 048242 93 TGAVLNCINFRL---NPLNVAIILGHAEAALVFVDQQYFALAEEAL-KIMEGKSEGLFKPPVLIVIGDETCDRAPLEYAL 168 (430)
Q Consensus 93 ~G~~~~~l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (430)
+|++++|++|.. +.+++.++++.+++++++++.+....+.... ...+ ....+..+..
T Consensus 88 ~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~------------ 148 (590)
T 3kxw_A 88 AGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNP-------KFLKIPAIAL------------ 148 (590)
T ss_dssp TTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CC-------EETTEEEEEG------------
T ss_pred hCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcc-------cccccceeec------------
Confidence 999999999987 4578999999999999999887554433221 1100 0011111110
Q ss_pred cCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhh
Q 048242 169 SKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHG 248 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~ 248 (430)
++.... ...........++++++|+|||||||.||||+++|+++.+.+.+....+++..+|++++.+|++|.
T Consensus 149 -------~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~ 220 (590)
T 3kxw_A 149 -------ESIELN-RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHD 220 (590)
T ss_dssp -------GGCCGG-GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSH
T ss_pred -------hhcccc-ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcc
Confidence 000000 001111234568899999999999999999999999999999999899999999999999999999
Q ss_pred hhhHH-HHHHHhhcceEEEeCCC----CHHHHHHHHHhhCceEEeeccHHHHHHHcCC---CCCCCCCCCceeEEeecCC
Q 048242 249 NGWCF-TWSLAALCGTSVMLRQA----SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAP---PEDTILPLPHVVNVNTGGS 320 (430)
Q Consensus 249 ~gl~~-~~~~l~~g~~~v~~~~~----~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~---~~~~~~~l~~lr~v~~~G~ 320 (430)
+|+.. ++.+++.|+++++.+.+ ++..+++.|+++++|++.++|.++..+.+.. .....+ +++||.+++||+
T Consensus 221 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~-l~~lr~~~~gg~ 299 (590)
T 3kxw_A 221 MGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLD-LSSWVTAFNGAE 299 (590)
T ss_dssp HHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCC-CTTCCEEEECSS
T ss_pred hhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCC-chhhHHHhhCCC
Confidence 99886 78888899999998765 8899999999999999999999999988752 223344 899999999999
Q ss_pred CCCHHHHHHHH-hc------CcEEEeeecCccccccccccccCCCCCC----------------CChhhhhhhccccCCc
Q 048242 321 PPPPPILLAMS-QK------GFRVTHVYGLSEINGPATVCAWNPNWDS----------------LPFEAQARLNARQGVK 377 (430)
Q Consensus 321 ~l~~~~~~~~~-~~------~~~v~~~YG~tE~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~vG~~ 377 (430)
++++++.++++ .+ +.++++.||+||+++.++.+.....+.. ...........++|+|
T Consensus 300 ~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p 379 (590)
T 3kxw_A 300 PVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNP 379 (590)
T ss_dssp CCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEE
T ss_pred CCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCC
Confidence 99999999998 44 3469999999999887776543211100 0001122345789999
Q ss_pred cccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccCCcccchHhhhC
Q 048242 378 CMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFAN 429 (430)
Q Consensus 378 ~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~d 429 (430)
+++ ++|+|++++++++.| ++|||+|+|++++.|||++|++|+++|.+
T Consensus 380 ~~~---v~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~f~~ 426 (590)
T 3kxw_A 380 IQE---VKIIDPDTLIPCDFD--QVGEIWVQSNSVAKGYWNQPEETRHAFAG 426 (590)
T ss_dssp SSE---EEEECTTTCCBCCTT--BCEEEEEESTTSCCCBTTCHHHHHHHHCB
T ss_pred CCC---eEEEcCCCCcCCCCC--CEEEEEEeCCcccccccCChhHHHHHHhc
Confidence 996 678999889999998 89999999999999999999999999953
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=3e-54 Score=430.19 Aligned_cols=369 Identities=22% Similarity=0.225 Sum_probs=296.3
Q ss_pred CCCCCCCCHHHHHHHHHhhCCCcceEEECC----------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhH
Q 048242 14 PANFTALTPLWFLERAATVHPTRKSVVYES----------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAM 83 (430)
Q Consensus 14 ~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~----------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~ 83 (430)
.......++.++|+++++++|+++|+++.+ +++||+||.++++++|+.|.+.|+ +||+|+++++|++++
T Consensus 14 ~~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~ 92 (562)
T 3ite_A 14 AQYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA 92 (562)
T ss_dssp ----CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH
T ss_pred eeecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH
Confidence 344567899999999999999999999743 789999999999999999999999 799999999999999
Q ss_pred HHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCc
Q 048242 84 YEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAP 163 (430)
Q Consensus 84 ~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (430)
++++|||+++|++++|++|.++.+++.++++.++++++|++.+...... ......++...
T Consensus 93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~~~-------- 152 (562)
T 3ite_A 93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------------LPPETKVLDTK-------- 152 (562)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------------CCTTCEEEETT--------
T ss_pred HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------------cCccceeeccc--------
Confidence 9999999999999999999999999999999999999999865432110 00111122111
Q ss_pred ccccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhh--------cCCCC
Q 048242 164 LEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLT--------WGMKE 235 (430)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~--------~~~~~ 235 (430)
...+.+.+....... ......++++++|+|||||||.||||+++|+++.+.+...... +.+..
T Consensus 153 --------~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~ 223 (562)
T 3ite_A 153 --------NQSFIENLSTQDTSD-ILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGG 223 (562)
T ss_dssp --------CHHHHHHHHHSCCSC-CCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTT
T ss_pred --------chhhhhhcccccccc-cccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCc
Confidence 112223222222221 1134567889999999999999999999999998877655443 34678
Q ss_pred CCEEEeccCchhhhhhHHHHHHHhhcceEEEeCCCC-HHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeE
Q 048242 236 GAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQAS-AKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVN 314 (430)
Q Consensus 236 ~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~~~~-~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~ 314 (430)
.+++++..|++|..++...+.++..|+++++.+.+. +..+.+.++++++|+++++|++++.+.... .+ +++||.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~----~~-~~~lr~ 298 (562)
T 3ite_A 224 VGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVP----ED-APHLVY 298 (562)
T ss_dssp TCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCG----GG-STTCCE
T ss_pred CceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCc----cc-cCceEE
Confidence 899999999999988888888999999998886543 567889999999999999999998875443 23 889999
Q ss_pred EeecCCCCCHHHHHHHHh-cCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCC
Q 048242 315 VNTGGSPPPPPILLAMSQ-KGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQ 393 (430)
Q Consensus 315 v~~~G~~l~~~~~~~~~~-~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~ 393 (430)
+++||+++++++.+++++ +++++++.||+||+++.++.....+. ....++|+|++++ +++|+|+++++
T Consensus 299 ~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~----------~~~~~~G~p~~~~-~~~i~d~~~~~ 367 (562)
T 3ite_A 299 LGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPD----------SDTRCIGHPLGDS-VAHVLAPGSNE 367 (562)
T ss_dssp EEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTT----------SCTTEEEEECTTC-EEEEECTTSSC
T ss_pred EEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCC----------CCCccccccCCCC-eEEEEeCCCCC
Confidence 999999999999999984 59999999999999877766543321 2346899999999 99999988799
Q ss_pred CCCCCCCceeEEEEecCcccccccCCcccchHhhhCC
Q 048242 394 PIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 394 ~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~dg 430 (430)
+++.| +.|||+|+|++++.|||++|++|...|.||
T Consensus 368 ~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g 402 (562)
T 3ite_A 368 HVKKG--MAGELVIEGSLVANGYLNRPDAKGFCDING 402 (562)
T ss_dssp BCCTT--SCEEEEEESTTSCCEESSCTTCCSEEEETT
T ss_pred CCCCC--CceEEEEeccccchhhCCCccccccccCCC
Confidence 99998 899999999999999999999988666543
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=3.3e-53 Score=424.52 Aligned_cols=380 Identities=17% Similarity=0.163 Sum_probs=304.4
Q ss_pred CCCCCCHHHHHHHHHhhCCCcceEEEC---CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhh
Q 048242 16 NFTALTPLWFLERAATVHPTRKSVVYE---SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPM 92 (430)
Q Consensus 16 ~~~~~t~~~~l~~~~~~~p~~~a~~~~---~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 92 (430)
.....++.++|++.++.+|+++++... ++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||++
T Consensus 17 ~~~~~tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 96 (576)
T 3gqw_A 17 YADFPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQY 96 (576)
T ss_dssp CSCCSSHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 344669999999999999998888653 38999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccCC-------hhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCccc
Q 048242 93 TGAVLNCINFRLN-------PLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLE 165 (430)
Q Consensus 93 ~G~~~~~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (430)
+|++++|+++.++ .+++.++++.+++++++++.+....+........ ...++..
T Consensus 97 ~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~--------~~~~~~~----------- 157 (576)
T 3gqw_A 97 AGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNP--------ELHVLSH----------- 157 (576)
T ss_dssp TTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCT--------TCEEEEH-----------
T ss_pred hCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCC--------cceecch-----------
Confidence 9999999999998 7899999999999999999887665554322111 1111110
Q ss_pred ccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhh-cCCCCCCEEEeccC
Q 048242 166 YALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLT-WGMKEGAVYLWTLP 244 (430)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~-~~~~~~~~~~~~~p 244 (430)
.+.+.. ...........++++++|+|||||||.||||+++|+++.+.+.+.... +++..+|++++.+|
T Consensus 158 --------~~~~~~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p 226 (576)
T 3gqw_A 158 --------AWFKAL---PEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLP 226 (576)
T ss_dssp --------HHHHTS---CCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCC
T ss_pred --------hhhhcc---cccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCC
Confidence 011111 111111233467899999999999999999999999999888877654 78999999999999
Q ss_pred chhhhhhHH-HHHHHhhcceEEEeCC----CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCC---CCCCCCCceeEEe
Q 048242 245 IFHGNGWCF-TWSLAALCGTSVMLRQ----ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE---DTILPLPHVVNVN 316 (430)
Q Consensus 245 l~h~~gl~~-~~~~l~~g~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~---~~~~~l~~lr~v~ 316 (430)
++|.+|+.. ++.++..|+++++.+. +++..+++.++++++|+++++|.+++.+.+.... ...+ +++||.++
T Consensus 227 ~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~-l~~lr~~~ 305 (576)
T 3gqw_A 227 FYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELD-LSCWRVAG 305 (576)
T ss_dssp TTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCC-CTTCCEEE
T ss_pred ccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCC-hhhhHhhh
Confidence 999999875 5666777888887763 6889999999999999999999999888765322 2234 89999999
Q ss_pred ecCCCCCHHHHHHHH-hc------CcEEEeeecCccccccccccccCCCCCCCCh-----------------hhhhhhcc
Q 048242 317 TGGSPPPPPILLAMS-QK------GFRVTHVYGLSEINGPATVCAWNPNWDSLPF-----------------EAQARLNA 372 (430)
Q Consensus 317 ~~G~~l~~~~~~~~~-~~------~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 372 (430)
+||+++++++.++++ .+ +.++++.||+||+++.++.+........... ........
T Consensus 306 ~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 385 (576)
T 3gqw_A 306 IGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFV 385 (576)
T ss_dssp ECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEE
T ss_pred ccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCcccee
Confidence 999999999999998 44 6889999999999887776543221100000 00001224
Q ss_pred ccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccCCcccchHhhhCC
Q 048242 373 RQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 373 ~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~dg 430 (430)
++|+|++++ +++|+|++ +++++.| ++|||+|+|+++++|||++++.+.+.|.||
T Consensus 386 ~~G~p~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g 439 (576)
T 3gqw_A 386 NCGKALPEH-GIEIRNEA-GMPVAER--VVGHICISGPSLMSGYFGDQVSQDEIAATG 439 (576)
T ss_dssp BCCEECTTC-EEEEECTT-SCBCCTT--BCEEEEEESTTSCCCBTTCHHHHHHHHHHS
T ss_pred ecCCcCCCC-eEEEECCC-CCCCCCC--CeEEEEEeCccccccccCCccccccccCCC
Confidence 899999999 99999977 9999998 999999999999999999999988877654
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.1e-53 Score=462.10 Aligned_cols=371 Identities=18% Similarity=0.205 Sum_probs=308.6
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHH
Q 048242 9 DLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHF 88 (430)
Q Consensus 9 ~~~~~~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 88 (430)
.++......+..++.++|+++++++|+++|+++.++++||+||.++++++|+.|.+.|+++|++|+|+++|++++++++|
T Consensus 453 ~~~~~~~~~~~~~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~l 532 (1304)
T 2vsq_A 453 GLNPPAQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGIL 532 (1304)
T ss_dssp TTSCCCCCCCCCCHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHH
T ss_pred hcCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHH
Confidence 34444455556899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccc
Q 048242 89 GVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYAL 168 (430)
Q Consensus 89 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (430)
||+++|++++|++|.++.+++.++++.+++++++++.+....+.. .......+.+++..
T Consensus 533 ailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----------~~~~~~~~~~~~~~---------- 591 (1304)
T 2vsq_A 533 GVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----------LPYTGTTLFIDDQT---------- 591 (1304)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----------CCCCSEEEESSCGG----------
T ss_pred HHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----------cCCCCcEEEecccc----------
Confidence 999999999999999999999999999999999998754321110 00112233322210
Q ss_pred cCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhh
Q 048242 169 SKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHG 248 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~ 248 (430)
.+ .. ..........++++++|+|||||||+||||+++|+++.+. .+....++++.+|+++...|++|.
T Consensus 592 -----~~----~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd 659 (1304)
T 2vsq_A 592 -----RF----EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFD 659 (1304)
T ss_dssp -----GG----GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTST
T ss_pred -----cc----cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHH
Confidence 00 00 1111123456889999999999999999999999999865 455566788899999999999999
Q ss_pred hhhHHHHHHHhhcceEEEeCC---CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHH
Q 048242 249 NGWCFTWSLAALCGTSVMLRQ---ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPP 325 (430)
Q Consensus 249 ~gl~~~~~~l~~g~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~ 325 (430)
.+...++.+++.|+++++.+. +++..+.+.|.++++|+++++|++++.+..... .. +++||.+++||++++++
T Consensus 660 ~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~---~~-~~~lr~~~~gGe~l~~~ 735 (1304)
T 2vsq_A 660 AFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE---DW-MKGLRCILFGGERASVP 735 (1304)
T ss_dssp HHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS---HH-HHTCSEEEEESSCCCHH
T ss_pred HHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch---hc-CCCccEEEEecCCCCHH
Confidence 888889999999999999864 689999999999999999999999999986532 22 67999999999999999
Q ss_pred HHHHHH-hc-CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCcee
Q 048242 326 ILLAMS-QK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIG 403 (430)
Q Consensus 326 ~~~~~~-~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~G 403 (430)
+.+++. .+ +++++|.||+||+++.++.+...... ......++|+|++++ +++|+|++ +++++.| ++|
T Consensus 736 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~-------~~~~~~~iG~p~~~~-~~~i~d~~-~~~~p~G--~~G 804 (1304)
T 2vsq_A 736 HVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLP-------DSISSLPIGKPISNA-SVYILNEQ-SQLQPFG--AVG 804 (1304)
T ss_dssp HHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCC-------SSCSSCCCBEECTTE-EEEEECTT-SCBCCTT--CCE
T ss_pred HHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcc-------ccCCCCCCceeeCCC-EEEEECCC-cCCCCCC--Cce
Confidence 999997 44 57899999999998877765432210 011336899999999 99999988 9999999 899
Q ss_pred EEEEecCcccccccCCcccchHhh
Q 048242 404 EVVMRGNMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 404 el~v~g~~v~~gY~~~~~~t~~~f 427 (430)
||+|+|+++++||||+|++|+++|
T Consensus 805 El~i~G~~v~~GY~~~p~~T~~~f 828 (1304)
T 2vsq_A 805 ELCISGMGVSKGYVNRADLTKEKF 828 (1304)
T ss_dssp EEEEEETTCCCCBTTCHHHHHHHE
T ss_pred EEEEeccccCccccCCcccchhhh
Confidence 999999999999999999999999
No 31
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=2.1e-54 Score=424.96 Aligned_cols=355 Identities=21% Similarity=0.257 Sum_probs=286.8
Q ss_pred CCCCHHHHHHHHHhhCCC-cceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 18 TALTPLWFLERAATVHPT-RKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 18 ~~~t~~~~l~~~~~~~p~-~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
+..++.++|.++++++|+ ++|+++.++++||+||.++++++|+.|. .|++|+++++|++++++++|||+++|++
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~ 94 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVA 94 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCC
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 456788889888999887 9999999999999999999999998874 3789999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchh
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYE 176 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (430)
++|++|.++.+++.++++.++++++|++.+.... ... .....+.++..
T Consensus 95 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~-----~~~--------~~~~~~~~~~~------------------- 142 (505)
T 3nyq_A 95 AVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP-----PAL--------GALERVDVDVR------------------- 142 (505)
T ss_dssp EEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC-----GGG--------TTSEEEECCTT-------------------
T ss_pred EEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc-----hhh--------ccccccccccc-------------------
Confidence 9999999999999999999999999998642100 000 01111111110
Q ss_pred hhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhH-HHH
Q 048242 177 KLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWC-FTW 255 (430)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~-~~~ 255 (430)
...........++++++|+|||||||.||||+++|+++.+.+.+....++++.+|++++.+|++|.+|+. .++
T Consensus 143 ------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 216 (505)
T 3nyq_A 143 ------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGIL 216 (505)
T ss_dssp ------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTH
T ss_pred ------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHH
Confidence 0011111345678999999999999999999999999999999988899999999999999999999987 478
Q ss_pred HHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCC---CCCCCCceeEEeecCCCCCHHHHHHHH-
Q 048242 256 SLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPED---TILPLPHVVNVNTGGSPPPPPILLAMS- 331 (430)
Q Consensus 256 ~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~---~~~~l~~lr~v~~~G~~l~~~~~~~~~- 331 (430)
.++..|+++++.+.+++..+++.+ ++++|+++++|+++..+.+..... ... ++++|.+++||+++++++.++++
T Consensus 217 ~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~-l~~lr~i~~gg~~l~~~~~~~~~~ 294 (505)
T 3nyq_A 217 GPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKA-LAGARLLVSGSAALPVHDHERIAA 294 (505)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHH-HHHCSEEEECSSCCCHHHHHHHHH
T ss_pred HHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcc-cccceEEEECCCCCCHHHHHHHHH
Confidence 889999999999999999999999 889999999999999998743211 122 67899999999999999999998
Q ss_pred hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCC-CCCceeEEEEecC
Q 048242 332 QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPA-DGKTIGEVVMRGN 410 (430)
Q Consensus 332 ~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~-~~~~~Gel~v~g~ 410 (430)
.+++++++.||+||+++.++..... ....+++|+|++++ +++|+|++ +++++. .++++|||+|+|+
T Consensus 295 ~~~~~~~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~~-~~~i~d~~-g~~~~~~~~g~~GEl~v~g~ 361 (505)
T 3nyq_A 295 ATGRRVIERYGMTETLMNTSVRADG-----------EPRAGTVGVPLPGV-ELRLVEED-GTPIAALDGESVGEIQVRGP 361 (505)
T ss_dssp HHSCCCEEEEEETTTEEEEECCTTS-----------CCCTTCCCEECTTC-EEEEC------CCCCCCSCCCEEEEEEST
T ss_pred hcCCeeecccchhhcccccccCCCC-----------CCCCCCcccCCCCC-EEEEECCC-CCCcccCCCCceEEEEEecC
Confidence 5699999999999998665543221 12347899999999 99999998 888876 1128999999999
Q ss_pred cccccccCCcccchHhhh-CC
Q 048242 411 MVMKGYLKNPKANEEAFA-NG 430 (430)
Q Consensus 411 ~v~~gY~~~~~~t~~~f~-dg 430 (430)
+++.|||++|++|+++|. ||
T Consensus 362 ~v~~GY~~~~~~t~~~f~~~g 382 (505)
T 3nyq_A 362 NLFTEYLNRPDATAAAFTEDG 382 (505)
T ss_dssp TSCCEETTCHHHHHHTBCTTS
T ss_pred chhhhhCCChhHhhhhhcCCC
Confidence 999999999999999994 44
No 32
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=1.1e-31 Score=253.37 Aligned_cols=216 Identities=13% Similarity=0.089 Sum_probs=177.5
Q ss_pred CCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHH---hhcCCCCCCEEEeccCc-hhhhhhHHHHHHHhhcceEEEe
Q 048242 192 RDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVV---LTWGMKEGAVYLWTLPI-FHGNGWCFTWSLAALCGTSVML 267 (430)
Q Consensus 192 ~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~~~~~pl-~h~~gl~~~~~~l~~g~~~v~~ 267 (430)
..++++++|+|||||||.||+|+++|+++...+.+.. ..+++..+|++++.+|+ +|..|+...+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 4678999999999999999999999999988877543 45577899999999999 99999998888888888 6666
Q ss_pred CCCCHH-----------------------HHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCH
Q 048242 268 RQASAK-----------------------AIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPP 324 (430)
Q Consensus 268 ~~~~~~-----------------------~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~ 324 (430)
..+++. .+++.|+++++|+++++|+++..+++.......+ +++||.+++||+++++
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~-~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQM-KQSLAQITLGGTELNL 245 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHH-HHHCSEEEEESSCCCH
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccc-cCCeeEEEECCccCCH
Confidence 677877 8888999999999999999999998874322233 6899999999999999
Q ss_pred HHHHHHH-hc--CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCc------cccccceEEeeCCCCCCC
Q 048242 325 PILLAMS-QK--GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVK------CMCLEGLDVLDTKTNQPI 395 (430)
Q Consensus 325 ~~~~~~~-~~--~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~------~~~~~~~~v~d~~~~~~~ 395 (430)
++.++++ +. ++++++.||+||+++++..+. ..++|++ .+++ +++|+|+++++++
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~----------------~~~~G~~~~~~~~~~~~-~v~ivD~~~g~~v 308 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSLL----------------ITSESQQVIYDSFSPFI-TYDVVDSITAQTV 308 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECC----------------BCTTCSSCEEECCTTTE-EEEEECTTTCSBC
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceeccc----------------cccCCCcccccCCCCCe-EEEEECCCCCcCC
Confidence 9999998 65 899999999999976654321 0248999 9999 9999999669999
Q ss_pred CCCCCceeEEEEecC---cccccccCCcccchHhhh
Q 048242 396 PADGKTIGEVVMRGN---MVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 396 ~~~~~~~Gel~v~g~---~v~~gY~~~~~~t~~~f~ 428 (430)
+.| ++|||+|++. .++.+|+..+..++....
T Consensus 309 p~G--~~GEl~vt~l~~~~~l~ry~tgD~~~~~~~~ 342 (369)
T 3hgu_A 309 EYG--ERGNVIVTHLSPWAFYPRVAERDTAIRLPGV 342 (369)
T ss_dssp CTT--CEEEEEEEEEETTEEEEEEEEEEEEEEECCS
T ss_pred CCC--CceEEEEEEcCcccccccccCCceEEEecCC
Confidence 999 9999999983 346788877776654443
No 33
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.97 E-value=6e-31 Score=246.33 Aligned_cols=196 Identities=16% Similarity=0.098 Sum_probs=169.4
Q ss_pred CCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeCCCCHH
Q 048242 194 EWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQASAK 273 (430)
Q Consensus 194 ~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~~~~~~ 273 (430)
.+++++|+|||||||.||||++||+++.+.+.+....++++.+|++++++|++|++|+..++.+++.|+++++.+.. .
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~--~ 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT--A 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--S
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--c
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999988642 1
Q ss_pred HHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHhcCcEEEeeecCcccccccccc
Q 048242 274 AIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVC 353 (430)
Q Consensus 274 ~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~ 353 (430)
..++.|+++++|+++++|+++..+++...... + +++||.+++||+++++++.++++++++++++.||+||+++.++..
T Consensus 114 ~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~-~-l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~ 191 (358)
T 4gs5_A 114 NPLAGLDHADFDFVAMVPMQLQSILENSATSG-Q-VDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALK 191 (358)
T ss_dssp CTTTTCSSCCCSEEEECHHHHHHHHHCTTTGG-G-GGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEE
T ss_pred cHHHHHHHhCCeEEEcChHHHHHhhccccccc-c-CCcceEEEEcccCCCchheecccccCceEEeccccccccceeecc
Confidence 23567899999999999999999998765433 4 899999999999999999999999999999999999998877765
Q ss_pred ccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccC
Q 048242 354 AWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLK 418 (430)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~ 418 (430)
.... ...+.+|.+.|++ ++.+. +.|||+++|+.+..|||.
T Consensus 192 ~~~~-----------~~~g~~~~~~pgv-~~~~~-------------~~Gel~~~g~~~~~g~~~ 231 (358)
T 4gs5_A 192 ALNG-----------PEASELYVFLPGI-QYGVD-------------ERGCLHISGAVTNGQTVQ 231 (358)
T ss_dssp ECSS-----------TTCCSCEEECTTC-EEEEC-------------TTSEEEEESGGGTTCCEE
T ss_pred cccc-----------cccceeeccCCCe-EEEec-------------CcCceEEecccccCccee
Confidence 4332 2347789999998 67652 349999999988877774
No 34
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.96 E-value=3.3e-29 Score=241.63 Aligned_cols=204 Identities=19% Similarity=0.242 Sum_probs=167.0
Q ss_pred CCCC-CCeeEEEeCCCCCCCCceEEechHHHHHHHHHH---HhhcCCCCCCEEEeccCchhhhhhH-HHHHHHhhcceEE
Q 048242 191 PRDE-WQSIALGYTSGTTANPKGVLVSHRAAYLMSLNV---VLTWGMKEGAVYLWTLPIFHGNGWC-FTWSLAALCGTSV 265 (430)
Q Consensus 191 ~~~~-~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~---~~~~~~~~~~~~~~~~pl~h~~gl~-~~~~~l~~g~~~v 265 (430)
..++ +++++++|||||||.||+|+++|+++.+.+... ...+++..+|++++..|+.|..+.. ..+.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 899999999999999999999999997766554 3345889999999999986655544 6777888999999
Q ss_pred EeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCC-CCCceeEEeecCCCCCHHHHHHHH-hcCcEEEeeecC
Q 048242 266 MLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTIL-PLPHVVNVNTGGSPPPPPILLAMS-QKGFRVTHVYGL 343 (430)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~-~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~v~~~YG~ 343 (430)
+.+.+++..+++.|+++++|+++++|+++..+.+.......+ .+++||.+++||+++++++.++++ .+|+++++.||+
T Consensus 161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~ 240 (436)
T 3qov_A 161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGM 240 (436)
T ss_dssp CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEE
T ss_pred eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcc
Confidence 988889999999999999999999999999998763322211 168999999999999999999998 559999999999
Q ss_pred ccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecC
Q 048242 344 SEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGN 410 (430)
Q Consensus 344 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~ 410 (430)
||+++.++..... .....|.+.+++ +++|+|++++++++.| +.|||+|+|.
T Consensus 241 TE~~~~~~~~~~~-------------~~~g~~~~~~~~-~v~i~d~~~g~~~~~g--~~Gel~v~~~ 291 (436)
T 3qov_A 241 TEMNGPGVAFECQ-------------EQNGMHFWEDCY-LVEIIDPETGEPVPEG--EIGELVLTTL 291 (436)
T ss_dssp GGGTEEEEEEECT-------------TCSSEEECTTTE-EEEEECTTTCSBCSTT--CCEEEEEEES
T ss_pred hhhcCCeeEEecC-------------CCCeeEEccCce-EEEEEECCCCCCCCCC--CceEEEEecc
Confidence 9996553322211 012356777899 8999997779999998 8999999985
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.96 E-value=4.8e-29 Score=240.60 Aligned_cols=204 Identities=16% Similarity=0.149 Sum_probs=167.7
Q ss_pred CCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHH---hhcCCCCCCEEEeccCc-hhhhhhHHHHHHHhhcceEEE
Q 048242 191 PRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVV---LTWGMKEGAVYLWTLPI-FHGNGWCFTWSLAALCGTSVM 266 (430)
Q Consensus 191 ~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~~~~~pl-~h~~gl~~~~~~l~~g~~~v~ 266 (430)
...++++++++|||||||.||+|+++|+++...+.... ..++++.+|++++.+|+ +|..++...+.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34678999999999999999999999999876654333 35778899999999998 788888888888899999998
Q ss_pred eCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCC-CCCceeEEeecCCCCCHHHHHHHH-hcCcEEEeeecCc
Q 048242 267 LRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTIL-PLPHVVNVNTGGSPPPPPILLAMS-QKGFRVTHVYGLS 344 (430)
Q Consensus 267 ~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~-~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~v~~~YG~t 344 (430)
.+.+++..+++.|+++++|+++++|+++..+.+.......+ .+++||.+++||+++++++.++++ .+|+++++.||+|
T Consensus 166 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~T 245 (437)
T 2y27_A 166 FGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLS 245 (437)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEET
T ss_pred CCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCch
Confidence 88889999999999999999999999999998754322222 047999999999999999999998 5699999999999
Q ss_pred ccccc-ccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecC
Q 048242 345 EINGP-ATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGN 410 (430)
Q Consensus 345 E~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~ 410 (430)
|+++. ++..... ....++.+.+++ .++|+|++++++++.| +.|||+|+|.
T Consensus 246 E~~g~~~~~~~~~-------------~~~g~~~~~~~~-~~~i~d~~~g~~~~~g--~~Gel~v~~~ 296 (437)
T 2y27_A 246 EVMGPGVASECVE-------------TKDGPTIWEDHF-YPEIIDPETGEVLPDG--ELGELVFTSL 296 (437)
T ss_dssp TTTEEEEEECCTT-------------TCSSCEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES
T ss_pred hhcCCeeEEecCC-------------CCCceeEccCce-EEEEEcCCCCCCCCCC--CccEEEEecC
Confidence 98543 3332211 001255667888 8999998879999998 8999999984
No 36
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.96 E-value=8.9e-29 Score=239.16 Aligned_cols=204 Identities=15% Similarity=0.152 Sum_probs=167.0
Q ss_pred CCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHH---hhcCCCCCCEEEeccCc-hhhhhhHHHHHHHhhcceEEE
Q 048242 191 PRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVV---LTWGMKEGAVYLWTLPI-FHGNGWCFTWSLAALCGTSVM 266 (430)
Q Consensus 191 ~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~~~~~pl-~h~~gl~~~~~~l~~g~~~v~ 266 (430)
...++++++++|||||||.||+|+++|+++........ ..+++..+|++++..|+ +|..++...+.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34678999999999999999999999999876554433 35788999999999998 677777778888899999999
Q ss_pred eCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCC-CCCceeEEeecCCCCCHHHHHHHH-hcCcEEEeeecCc
Q 048242 267 LRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTIL-PLPHVVNVNTGGSPPPPPILLAMS-QKGFRVTHVYGLS 344 (430)
Q Consensus 267 ~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~-~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~v~~~YG~t 344 (430)
.+.+++..+++.|+++++|+++++|+++..+.+.......+ .+++||.+++||+++++++.++++ .+|+++++.||+|
T Consensus 168 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~T 247 (443)
T 2y4o_A 168 MSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLS 247 (443)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEET
T ss_pred CCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCch
Confidence 88889999999999999999999999999998754322222 047999999999999999999998 5699999999999
Q ss_pred ccccc-ccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecC
Q 048242 345 EINGP-ATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGN 410 (430)
Q Consensus 345 E~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~ 410 (430)
|+++. ++..... .....+.+.+++ .++|+|++++++++.| +.|||+|+|.
T Consensus 248 E~~g~~~~~~~~~-------------~~~g~~~~~~~~-~~~i~d~~~g~~~~~G--~~Gel~v~~~ 298 (443)
T 2y4o_A 248 EVMGPGVACECVE-------------TKDGPVIWEDHF-YPEIIDPVTGEVLPDG--SQGELVFTSL 298 (443)
T ss_dssp TTTEEEEEEECTT-------------TCCSEEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES
T ss_pred hhcCCeEEeccCC-------------CCCceEEccCCe-EEEEEcCCCCCCCCCC--CceEEEEeCC
Confidence 98543 3322211 001245566888 8999998779999998 8999999984
No 37
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=93.52 E-value=0.55 Score=44.19 Aligned_cols=90 Identities=12% Similarity=0.104 Sum_probs=72.9
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCc--hhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEE
Q 048242 44 KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNV--PAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALV 121 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~--~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~v 121 (430)
..+|.+.+...+..++..+...|+.++|++...++.+ ...+...++++..|+.++++++ .+++.+...+++.++.++
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 186 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDII 186 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEE
Confidence 5689999998888888888788999999999888853 3445567888999999887765 478889999999999999
Q ss_pred EeccccHHHHHHH
Q 048242 122 FVDQQYFALAEEA 134 (430)
Q Consensus 122 i~~~~~~~~~~~~ 134 (430)
+.....+..+.+.
T Consensus 187 ~~~Ps~~~~l~~~ 199 (437)
T 2y27_A 187 MVTPSYMLSIADE 199 (437)
T ss_dssp EECHHHHHHHHHH
T ss_pred EECHHHHHHHHHH
Confidence 9988777655543
No 38
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=93.18 E-value=0.68 Score=43.67 Aligned_cols=90 Identities=12% Similarity=0.131 Sum_probs=72.9
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCc--hhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEE
Q 048242 44 KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNV--PAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALV 121 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~--~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~v 121 (430)
..+|.+.+...+..++..+...|+.++|++...++-+ ...+...++++..|+.++++++. .++.+...+++.++.++
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEE
Confidence 5689999998888888888788999999999888753 34455678888999998887654 78888999999999999
Q ss_pred EeccccHHHHHHH
Q 048242 122 FVDQQYFALAEEA 134 (430)
Q Consensus 122 i~~~~~~~~~~~~ 134 (430)
+.....+..+.+.
T Consensus 189 ~~~Ps~~~~l~~~ 201 (443)
T 2y4o_A 189 LVTPSYMLNLIDE 201 (443)
T ss_dssp EECHHHHHHHHHH
T ss_pred EECHHHHHHHHHH
Confidence 9888776655443
No 39
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=93.07 E-value=0.7 Score=43.48 Aligned_cols=91 Identities=10% Similarity=-0.001 Sum_probs=74.2
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCc--hhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEE
Q 048242 44 KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNV--PAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALV 121 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~--~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~v 121 (430)
..+|.+.+...+..++..+...++.++|++..+++-+ ...+..+++++..|+.+++.++. .++.+...+++.++.++
T Consensus 104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEE
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEE
Confidence 5799999999898888888888999999999888743 34455778889999998887644 67888999999999999
Q ss_pred EeccccHHHHHHHH
Q 048242 122 FVDQQYFALAEEAL 135 (430)
Q Consensus 122 i~~~~~~~~~~~~~ 135 (430)
+.....+..+.+..
T Consensus 183 ~~~P~~~~~l~~~~ 196 (436)
T 3qov_A 183 HAIPSYAIRLAEVF 196 (436)
T ss_dssp ECCHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHH
Confidence 99888776655443
No 40
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=84.77 E-value=3.3 Score=37.71 Aligned_cols=86 Identities=10% Similarity=-0.033 Sum_probs=63.2
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCch--hHHHHHHHhhhcCCeeeeccccCChh--------------
Q 048242 44 KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVP--AMYEVHFGVPMTGAVLNCINFRLNPL-------------- 107 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~~~l~~~~~~~-------------- 107 (430)
..+|.+.+...+..++..+...|+.++|++..++|-+. -.+...++++..|+.+++.. ..+.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhh
Confidence 56899999888887777777789999999998887622 33444555688899655543 2333
Q ss_pred ---------hHHHHHhhcCceEEEeccccHHHH
Q 048242 108 ---------NVAIILGHAEAALVFVDQQYFALA 131 (430)
Q Consensus 108 ---------~l~~~l~~~~~~~vi~~~~~~~~~ 131 (430)
.+...+++.++.+++.....+..+
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 219 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL 219 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 666688999999999887765544
No 41
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=84.76 E-value=8.9 Score=36.51 Aligned_cols=97 Identities=9% Similarity=0.108 Sum_probs=72.0
Q ss_pred CCCcceEEECC---------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhH-HHHHHHhhhcCCeeeeccc
Q 048242 33 HPTRKSVVYES---------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAM-YEVHFGVPMTGAVLNCINF 102 (430)
Q Consensus 33 ~p~~~a~~~~~---------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~~~l~~ 102 (430)
.++.+|++... ..+|++.+...+..+... .++.++|++...+|-...+ +..+++++..|+..+..+
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 236 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES---LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD- 236 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH---TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh---hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence 45667766521 679999988776665543 4889999988887765432 445678888999888775
Q ss_pred cCChhhHHHHHhhcCceEEEeccccHHHHHH
Q 048242 103 RLNPLNVAIILGHAEAALVFVDQQYFALAEE 133 (430)
Q Consensus 103 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 133 (430)
..+++.+...+++.++.+++.....+..+..
T Consensus 237 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 267 (501)
T 3ipl_A 237 KFNAEQILTMIKNERITHISLVPQTLNWLMQ 267 (501)
T ss_dssp SCCHHHHHHHHHHSCCCEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCcEEEchHHHHHHHHh
Confidence 5678899999999999999998876665443
No 42
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=83.97 E-value=7.4 Score=37.95 Aligned_cols=97 Identities=8% Similarity=-0.005 Sum_probs=71.2
Q ss_pred CCCcceEEECC---------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHH--HHHHhhhcCCeeeecc
Q 048242 33 HPTRKSVVYES---------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYE--VHFGVPMTGAVLNCIN 101 (430)
Q Consensus 33 ~p~~~a~~~~~---------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~--~~lA~~~~G~~~~~l~ 101 (430)
.++.+|++... ..+|.+.+...+...+.. .++.++|++..++|-...+-. .+++.+..|+..+..+
T Consensus 165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 241 (590)
T 3kxw_A 165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTS---FHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS 241 (590)
T ss_dssp CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHh---hCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence 45667776522 679999998877666553 488999999988887655433 3788888999988876
Q ss_pred ccC---ChhhHHHHHhhcCceEEEeccccHHHHH
Q 048242 102 FRL---NPLNVAIILGHAEAALVFVDQQYFALAE 132 (430)
Q Consensus 102 ~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 132 (430)
+.. .+..+...+++.++.++......+..+.
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 275 (590)
T 3kxw_A 242 PFSFLQNPLSWLKHITKYKATISGSPNFAYDYCV 275 (590)
T ss_dssp HHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHH
Confidence 542 6778888999999999887766555443
No 43
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=82.64 E-value=14 Score=35.48 Aligned_cols=98 Identities=9% Similarity=0.003 Sum_probs=71.8
Q ss_pred CCCcceEEEC---------CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhH--HH-HHHHhhhcCCeeeec
Q 048242 33 HPTRKSVVYE---------SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAM--YE-VHFGVPMTGAVLNCI 100 (430)
Q Consensus 33 ~p~~~a~~~~---------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~--~~-~~lA~~~~G~~~~~l 100 (430)
.|+.+|++.. +..+|.+.+...+...... .++.++|++...+|-...+ .. .+++.+..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 4566666642 1679999888776655543 3788999988888765433 22 478888999998876
Q ss_pred cccCChhhHHHHHhhcCceEEEeccccHHHHHHH
Q 048242 101 NFRLNPLNVAIILGHAEAALVFVDQQYFALAEEA 134 (430)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 134 (430)
+ ...+..+...+++.++.+++.....+..+.+.
T Consensus 257 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 289 (539)
T 1mdb_A 257 P-SPSPDDAFPLIEREKVTITALVPPLAMVWMDA 289 (539)
T ss_dssp S-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhC
Confidence 4 56788899999999999999988776655443
No 44
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=82.35 E-value=6.5 Score=38.05 Aligned_cols=96 Identities=14% Similarity=0.179 Sum_probs=70.0
Q ss_pred CcceEEEC---------CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhH--HHHHHHhhhcCCeeeecccc
Q 048242 35 TRKSVVYE---------SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAM--YEVHFGVPMTGAVLNCINFR 103 (430)
Q Consensus 35 ~~~a~~~~---------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~--~~~~lA~~~~G~~~~~l~~~ 103 (430)
+.+|++.. ...+|.+.+...+......+...++.++|++..++|-...+ ...+++.+ .|+..+..+ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 66777753 26799999887766655443335788999988887765433 33456777 999888775 5
Q ss_pred CChhhHHHHHhhcCceEEEeccccHHHHH
Q 048242 104 LNPLNVAIILGHAEAALVFVDQQYFALAE 132 (430)
Q Consensus 104 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 132 (430)
..++.+...+++.++.+++.....+..+.
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 298 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAILN 298 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 67888999999999999999887665443
No 45
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=81.71 E-value=13 Score=35.52 Aligned_cols=94 Identities=11% Similarity=-0.013 Sum_probs=69.2
Q ss_pred CCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhh---cCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC-
Q 048242 193 DEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLT---WGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR- 268 (430)
Q Consensus 193 ~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~- 268 (430)
.|+.+|++. .+..+|++.+...+..+... .++..+|++...++... -.+...++++..|+..+.++
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCS-EMIELIGAVALIGAILLPVNY 88 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH-HHHHHHHHHHHhCCEEEecCC
Confidence 355667654 12578999887666555443 47889999988888643 23445677777888888885
Q ss_pred CCCHHHHHHHHHhhCceEEeeccHHHHH
Q 048242 269 QASAKAIYKAIAEHGVTNFCAAPIVLNS 296 (430)
Q Consensus 269 ~~~~~~~~~~l~~~~vt~~~~~p~~l~~ 296 (430)
.....++...+++.++..++..+.....
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 4688899999999999999998876655
No 46
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=81.47 E-value=13 Score=35.83 Aligned_cols=96 Identities=15% Similarity=0.071 Sum_probs=70.8
Q ss_pred CCcceEEECC---------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHH---HHHHhhhcCCeeeecc
Q 048242 34 PTRKSVVYES---------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYE---VHFGVPMTGAVLNCIN 101 (430)
Q Consensus 34 p~~~a~~~~~---------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~---~~lA~~~~G~~~~~l~ 101 (430)
++.+|++... ..+|.+.+...+...+.. .++.++|++...+|-...+-. .+++.+..|+.++..+
T Consensus 190 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~ 266 (544)
T 3o83_A 190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP 266 (544)
T ss_dssp TTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred ccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC
Confidence 4566766421 679999988777666554 488999999888876544322 4788888999888764
Q ss_pred ccCChhhHHHHHhhcCceEEEeccccHHHHHH
Q 048242 102 FRLNPLNVAIILGHAEAALVFVDQQYFALAEE 133 (430)
Q Consensus 102 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 133 (430)
...+..+...+++.++.+++.....+..+.+
T Consensus 267 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 297 (544)
T 3o83_A 267 -NPEPLNCFSIIQRHQVNMASLVPSAVIMWLE 297 (544)
T ss_dssp -SCCHHHHHHHHHHHTCCEEEECHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHCCCEEEechHHHHHHHh
Confidence 4578888899999999999998876655433
No 47
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=80.19 E-value=13 Score=35.66 Aligned_cols=85 Identities=11% Similarity=0.049 Sum_probs=64.5
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHH--HHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEE
Q 048242 44 KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYE--VHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALV 121 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~--~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~v 121 (430)
..+|.+.+...+..++..+ ++.++|++...+|-...+-. .+++++ .|+..+.. +...+..+...+++.++.++
T Consensus 188 V~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~-~~~~~~~~~~~i~~~~~t~~ 262 (517)
T 3r44_A 188 VVHTHESVHSAASSWASTI---DVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM-PQFDATKVWSLIVEERVCIG 262 (517)
T ss_dssp EEEEHHHHHHHHHHHHHHS---CCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-SSCCHHHHHHHHHHTTCCEE
T ss_pred eeeeHHHHHHHHHHHHHhc---CCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-CCCCHHHHHHHHHHhCCeEE
Confidence 6799999888777665544 88999999888887654332 345555 88888766 46788889999999999999
Q ss_pred EeccccHHHHHH
Q 048242 122 FVDQQYFALAEE 133 (430)
Q Consensus 122 i~~~~~~~~~~~ 133 (430)
......+..+..
T Consensus 263 ~~~P~~~~~l~~ 274 (517)
T 3r44_A 263 GAVPAILNFMRQ 274 (517)
T ss_dssp EECHHHHHHHHH
T ss_pred EeHHHHHHHHHh
Confidence 998877665544
No 48
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=79.93 E-value=22 Score=34.13 Aligned_cols=85 Identities=9% Similarity=-0.041 Sum_probs=63.8
Q ss_pred eEEechHHHHHHHHHHHh---hcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC-CCCHHHHHHHHHhhCceEE
Q 048242 212 GVLVSHRAAYLMSLNVVL---TWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR-QASAKAIYKAIAEHGVTNF 287 (430)
Q Consensus 212 ~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~-~~~~~~~~~~l~~~~vt~~ 287 (430)
...+|+..+...+..+.. ..++..+|++...++... -.+...++++..|+..+.+. .....++...+++.++.++
T Consensus 45 ~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~v 123 (541)
T 1v25_A 45 VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHF-RHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVL 123 (541)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH-HHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEE
Confidence 457899988766554443 457889999988888643 23445677777888888875 5678899999999999999
Q ss_pred eeccHHHHHH
Q 048242 288 CAAPIVLNSI 297 (430)
Q Consensus 288 ~~~p~~l~~l 297 (430)
+..+.....+
T Consensus 124 i~~~~~~~~~ 133 (541)
T 1v25_A 124 LFDPNLLPLV 133 (541)
T ss_dssp EECGGGHHHH
T ss_pred EEChhHHHHH
Confidence 9988765544
No 49
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=79.93 E-value=11 Score=36.48 Aligned_cols=85 Identities=8% Similarity=-0.002 Sum_probs=64.4
Q ss_pred EEechHHHHHHHHHHHh---hcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC-CCCHHHHHHHHHhhCceEEe
Q 048242 213 VLVSHRAAYLMSLNVVL---TWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR-QASAKAIYKAIAEHGVTNFC 288 (430)
Q Consensus 213 v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~-~~~~~~~~~~l~~~~vt~~~ 288 (430)
..+|++.+...+..+.. ..++..+|++...++... -.+...++++..|+..+.+. .....++...+++.++.+++
T Consensus 49 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi 127 (550)
T 3rix_A 49 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL-QFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF 127 (550)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCT-TTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcc-cHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEE
Confidence 46899988766554444 348899999988888643 33456677778898888875 57889999999999999999
Q ss_pred eccHHHHHHH
Q 048242 289 AAPIVLNSIV 298 (430)
Q Consensus 289 ~~p~~l~~l~ 298 (430)
..+..+..+.
T Consensus 128 ~~~~~~~~~~ 137 (550)
T 3rix_A 128 VSKKGLQKIL 137 (550)
T ss_dssp ECGGGHHHHH
T ss_pred EcHHHHHHHH
Confidence 8887665543
No 50
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=78.97 E-value=19 Score=32.26 Aligned_cols=66 Identities=12% Similarity=0.032 Sum_probs=51.7
Q ss_pred HHHHcC-CCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccc
Q 048242 61 ALSQLS-IGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQ 126 (430)
Q Consensus 61 ~L~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 126 (430)
.+.+.| +++|+.|.+....+..-..+.++|.+.|.-++.+-|...+......++..++++++++..
T Consensus 61 ~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 344555 488888766667788888888999999998877777766667788899999999999864
No 51
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=77.21 E-value=10 Score=36.24 Aligned_cols=84 Identities=11% Similarity=0.105 Sum_probs=64.3
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhH-HHHHHHhhhcCCeeeecccc--CChhhHHHHHhhcCceE
Q 048242 44 KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAM-YEVHFGVPMTGAVLNCINFR--LNPLNVAIILGHAEAAL 120 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~~~l~~~--~~~~~l~~~l~~~~~~~ 120 (430)
..+|++.+...+...... .++.++|++..++|-+..+ +..+++.+..|+..+.+++. ..+..+...+++.++.+
T Consensus 162 v~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 238 (512)
T 3fce_A 162 VQITYNCLVSFTKWAVED---FNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQV 238 (512)
T ss_dssp EEEEHHHHHHHHHHHHHH---TTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCE
T ss_pred EEEehHHHHHHHHHHHHh---cCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcE
Confidence 679999888766555443 4889999999888865433 45678888999998887653 56788899999999999
Q ss_pred EEeccccHHH
Q 048242 121 VFVDQQYFAL 130 (430)
Q Consensus 121 vi~~~~~~~~ 130 (430)
++.....+..
T Consensus 239 ~~~~P~~~~~ 248 (512)
T 3fce_A 239 WTSTPSFAEM 248 (512)
T ss_dssp EEECHHHHHH
T ss_pred EEecHHHHHH
Confidence 9988766543
No 52
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=76.41 E-value=28 Score=33.49 Aligned_cols=103 Identities=7% Similarity=0.014 Sum_probs=70.7
Q ss_pred CCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh---hcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC-
Q 048242 193 DEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL---TWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR- 268 (430)
Q Consensus 193 ~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~- 268 (430)
.++.++++....+..+ -..-.+|++.|...+..+.. ..++..+|++...++... -.+...++++..|+..+.++
T Consensus 32 ~p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl~~ 109 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSI-DYVMTIYALWRVAATPVPINP 109 (549)
T ss_dssp HTTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH-HHHHHHHHHHHhCCEEEccCC
Confidence 3556777654321111 11246888888666554443 447889999988888643 23445677778888888885
Q ss_pred CCCHHHHHHHHHhhCceEEeeccHHHHHH
Q 048242 269 QASAKAIYKAIAEHGVTNFCAAPIVLNSI 297 (430)
Q Consensus 269 ~~~~~~~~~~l~~~~vt~~~~~p~~l~~l 297 (430)
.....++...+++.++..++..+.....+
T Consensus 110 ~~~~~~l~~il~~~~~~~~i~~~~~~~~~ 138 (549)
T 3g7s_A 110 MYKSFELEHILNDSEATTLVVHSMLYENF 138 (549)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred CCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 57788999999999999999887665544
No 53
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=76.18 E-value=14 Score=33.51 Aligned_cols=93 Identities=19% Similarity=0.041 Sum_probs=63.3
Q ss_pred CCCcceEEEC---------CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchh-HHHHHHHhhhcCCeeeeccc
Q 048242 33 HPTRKSVVYE---------SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPA-MYEVHFGVPMTGAVLNCINF 102 (430)
Q Consensus 33 ~p~~~a~~~~---------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~~~l~~ 102 (430)
+++.+|++.. ...+|++.+...+..++.. .+++++|++..++|-.-. .+..++..+..|+..+...+
T Consensus 35 ~~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~ 111 (358)
T 4gs5_A 35 LGGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEP 111 (358)
T ss_dssp HHTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECC
T ss_pred CCCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCc
Confidence 3456666642 1679999988777665544 488999999888876543 34455666777888777665
Q ss_pred cCChhhHHHHHhhcCceEEEeccccHHHH
Q 048242 103 RLNPLNVAIILGHAEAALVFVDQQYFALA 131 (430)
Q Consensus 103 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 131 (430)
.... ...+++.++..+......+..+
T Consensus 112 ~~~~---~~~i~~~~~t~~~~~P~~l~~l 137 (358)
T 4gs5_A 112 TANP---LAGLDHADFDFVAMVPMQLQSI 137 (358)
T ss_dssp CSCT---TTTCSSCCCSEEEECHHHHHHH
T ss_pred cccH---HHHHHHhCCeEEEcChHHHHHh
Confidence 4333 3457888999988877655544
No 54
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=75.99 E-value=20 Score=34.37 Aligned_cols=96 Identities=8% Similarity=-0.008 Sum_probs=68.2
Q ss_pred CCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh---hcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC-
Q 048242 193 DEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL---TWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR- 268 (430)
Q Consensus 193 ~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~- 268 (430)
.++.++++... +| -.+|++.+...+..+.. ..++..+|++...++... -.+...++++..|+..+.++
T Consensus 35 ~p~~~a~~~~~---~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~-~~~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLINGA---NG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSP-EFVLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH-HHHHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEECC---CC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH-HHHHHHHHHHHhCCEEeccCC
Confidence 45667765422 22 46899988666554443 457899999988888643 23445677778888888875
Q ss_pred CCCHHHHHHHHHhhCceEEeeccHHHHH
Q 048242 269 QASAKAIYKAIAEHGVTNFCAAPIVLNS 296 (430)
Q Consensus 269 ~~~~~~~~~~l~~~~vt~~~~~p~~l~~ 296 (430)
.....++...+++.++..++..+.....
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 134 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEK 134 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHH
Confidence 5678899999999999999987755443
No 55
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=74.88 E-value=36 Score=32.99 Aligned_cols=101 Identities=12% Similarity=0.015 Sum_probs=70.2
Q ss_pred CCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh---hc-CCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC
Q 048242 193 DEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL---TW-GMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR 268 (430)
Q Consensus 193 ~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~---~~-~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~ 268 (430)
.++.++++.... .| ....+|++.+...+..+.. .. +++.+|++...++... -.+...++++..|+..+.++
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Ga~~vpl~ 130 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP-EWWLVILGCIRAGLIFMPGT 130 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH-HHHHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH-HHHHHHHHHHHcCeEEEecC
Confidence 455677665321 11 2457899988666554443 33 7889999988888643 22445677777888888875
Q ss_pred -CCCHHHHHHHHHhhCceEEeeccHHHHHHH
Q 048242 269 -QASAKAIYKAIAEHGVTNFCAAPIVLNSIV 298 (430)
Q Consensus 269 -~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~ 298 (430)
.....++...+++.++..++..+.....+.
T Consensus 131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 161 (570)
T 3c5e_A 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEVD 161 (570)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEETTTHHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEechHHHHHHH
Confidence 467889999999999999998777665543
No 56
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=73.52 E-value=13 Score=35.37 Aligned_cols=85 Identities=8% Similarity=0.081 Sum_probs=64.4
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhH-HHHHHHhhhcCCeeeecccc--CChhhHHHHHhhcCceE
Q 048242 44 KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAM-YEVHFGVPMTGAVLNCINFR--LNPLNVAIILGHAEAAL 120 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~~~l~~~--~~~~~l~~~l~~~~~~~ 120 (430)
..+|.+.+...+..++.. .++.++|++..++|-+..+ +..+++++..|+..+.++.. ..+..+...+++.++.+
T Consensus 161 V~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 237 (511)
T 3e7w_A 161 VQISAANLQSFTDWICAD---FPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNV 237 (511)
T ss_dssp EEEEHHHHHHHHHHHHHH---STTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSE
T ss_pred EEEcHHHHHHHHHHHHHh---cCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcE
Confidence 679999888776655443 4788999998888866433 45578889999988877553 56778889999999999
Q ss_pred EEeccccHHHH
Q 048242 121 VFVDQQYFALA 131 (430)
Q Consensus 121 vi~~~~~~~~~ 131 (430)
++.....+..+
T Consensus 238 ~~~~P~~~~~l 248 (511)
T 3e7w_A 238 WTSTPSFVQMC 248 (511)
T ss_dssp EEECHHHHHHH
T ss_pred EEecHHHHHHH
Confidence 99887665543
No 57
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=73.01 E-value=42 Score=32.84 Aligned_cols=97 Identities=12% Similarity=0.036 Sum_probs=70.6
Q ss_pred CCcceEEEC---------CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchh--HHH-HHHHhhhcCCeeeecc
Q 048242 34 PTRKSVVYE---------SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPA--MYE-VHFGVPMTGAVLNCIN 101 (430)
Q Consensus 34 p~~~a~~~~---------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~--~~~-~~lA~~~~G~~~~~l~ 101 (430)
++.+|++.. +..+|.+.+...+......+ ++.++|++..++|-... ... .+++.+..|+..+..+
T Consensus 183 ~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~---~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~ 259 (617)
T 3rg2_A 183 ADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC---QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA 259 (617)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS
T ss_pred CCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc---CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC
Confidence 456666642 26799998887776655544 78899999988885443 332 4788888899888765
Q ss_pred ccCChhhHHHHHhhcCceEEEeccccHHHHHHH
Q 048242 102 FRLNPLNVAIILGHAEAALVFVDQQYFALAEEA 134 (430)
Q Consensus 102 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 134 (430)
...+..+...+++.++.++......+..+.+.
T Consensus 260 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 291 (617)
T 3rg2_A 260 -DPSATLCFPLIEKHQVNVTALVPPAVSLWLQA 291 (617)
T ss_dssp -SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHh
Confidence 45777888899999999999988776655443
No 58
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=72.11 E-value=41 Score=31.44 Aligned_cols=105 Identities=10% Similarity=0.029 Sum_probs=71.0
Q ss_pred CCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhc---CCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeCC
Q 048242 193 DEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTW---GMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQ 269 (430)
Q Consensus 193 ~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~~ 269 (430)
.++.+|++.........-....+|++.+...+..+...+ +. .+|++...++... -.+...++++..|+..+.+..
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~-e~~~~~lA~~~~G~v~vpl~~ 114 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGL-EYVVAFLGALQAGRIAVPLSV 114 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcH-HHHHHHHHHHHhCcEEEeeCC
Confidence 456677765432111111346899999877666555443 54 7888888877643 234456777788888888753
Q ss_pred ----CCHHHHHHHHHhhCceEEeeccHHHHHHHc
Q 048242 270 ----ASAKAIYKAIAEHGVTNFCAAPIVLNSIVN 299 (430)
Q Consensus 270 ----~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~ 299 (430)
....++...+++.++..++..+.....+..
T Consensus 115 ~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 115 PQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 456889999999999999998877666543
No 59
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=72.01 E-value=38 Score=30.39 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccc
Q 048242 56 RRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQ 126 (430)
Q Consensus 56 ~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 126 (430)
+.+.+...+.-+++|.+..+....+..-+.+.++|.+.|.-+..+-|...+......++..++++++++..
T Consensus 72 ~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 72 AMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 33433333334678876677888888889999999999998888888888888889999999999999754
No 60
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=71.59 E-value=43 Score=31.69 Aligned_cols=84 Identities=13% Similarity=0.059 Sum_probs=60.9
Q ss_pred EEechHHHHHHHHHHHh---hcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC-CCCHHHHHHHHHhhCceEEe
Q 048242 213 VLVSHRAAYLMSLNVVL---TWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR-QASAKAIYKAIAEHGVTNFC 288 (430)
Q Consensus 213 v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~-~~~~~~~~~~l~~~~vt~~~ 288 (430)
..+|++.+...+..+.. ..++..+|++...++.... .+...++++..|+..+.++ .....++...+++.++..++
T Consensus 28 ~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i 106 (504)
T 1t5h_X 28 LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD-VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAV 106 (504)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEE
T ss_pred ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEE
Confidence 57899988766554443 3578899999888886432 3445677778898888885 46788999999999999998
Q ss_pred e--ccHHHHHH
Q 048242 289 A--APIVLNSI 297 (430)
Q Consensus 289 ~--~p~~l~~l 297 (430)
. .+.....+
T Consensus 107 ~~~~~~~~~~~ 117 (504)
T 1t5h_X 107 IAVGRQVADAI 117 (504)
T ss_dssp ECC--CHHHHH
T ss_pred Eecchhhhhhh
Confidence 8 66555444
No 61
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=70.85 E-value=24 Score=29.25 Aligned_cols=89 Identities=13% Similarity=0.120 Sum_probs=53.7
Q ss_pred EEEeccCc-hhhhhhHHHHHHHh-hcceEEEe-CCCCHHHHHHHHHhhCceEEee--cc----HH--HHHHHcCCCCCCC
Q 048242 238 VYLWTLPI-FHGNGWCFTWSLAA-LCGTSVML-RQASAKAIYKAIAEHGVTNFCA--AP----IV--LNSIVNAPPEDTI 306 (430)
Q Consensus 238 ~~~~~~pl-~h~~gl~~~~~~l~-~g~~~v~~-~~~~~~~~~~~l~~~~vt~~~~--~p----~~--l~~l~~~~~~~~~ 306 (430)
+++.+.+- .|..|....-..+. .|-.++.. ....++.+.+.+.++++..+.. +- ++ +..+.+..+...
T Consensus 95 vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~- 173 (215)
T 3ezx_A 95 AITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEK- 173 (215)
T ss_dssp EEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTT-
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcC-
Confidence 34444443 68888886555554 45555555 3568899999999999987776 22 21 233332222111
Q ss_pred CCC-CceeEEeecCCCCCHHHHHHH
Q 048242 307 LPL-PHVVNVNTGGSPPPPPILLAM 330 (430)
Q Consensus 307 ~~l-~~lr~v~~~G~~l~~~~~~~~ 330 (430)
+ ..++ +++||.+++++..+++
T Consensus 174 --~~~~v~-v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 174 --LRDSVK-CMFGGAPVSDKWIEEI 195 (215)
T ss_dssp --CGGGSE-EEEESSSCCHHHHHHH
T ss_pred --CCCCCE-EEEECCCCCHHHHHHh
Confidence 1 1334 6788999998765543
No 62
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=70.48 E-value=40 Score=32.55 Aligned_cols=84 Identities=6% Similarity=-0.011 Sum_probs=62.5
Q ss_pred EEechHHHHHHHHHHHh---hcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC-CCCHHHHHHHHHhhCceEEe
Q 048242 213 VLVSHRAAYLMSLNVVL---TWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR-QASAKAIYKAIAEHGVTNFC 288 (430)
Q Consensus 213 v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~-~~~~~~~~~~l~~~~vt~~~ 288 (430)
-.+|++.+...+..+.. ..+++.+|++...++... -.+...++++..|+..+.++ .....++...+++.++..++
T Consensus 63 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li 141 (563)
T 1amu_A 63 EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSI-DLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLL 141 (563)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEE
Confidence 36899988766554443 357889999988888643 23445677777888888875 46788999999999999999
Q ss_pred eccHHHHHH
Q 048242 289 AAPIVLNSI 297 (430)
Q Consensus 289 ~~p~~l~~l 297 (430)
..+.....+
T Consensus 142 ~~~~~~~~~ 150 (563)
T 1amu_A 142 TQKHLVHLI 150 (563)
T ss_dssp ECGGGHHHH
T ss_pred EcCchhhhh
Confidence 887655443
No 63
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=70.39 E-value=44 Score=33.10 Aligned_cols=96 Identities=7% Similarity=0.069 Sum_probs=68.3
Q ss_pred CCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHH---h-hcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC
Q 048242 193 DEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVV---L-TWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR 268 (430)
Q Consensus 193 ~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~---~-~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~ 268 (430)
.++.+|++.... ..| ....+|++.|...+..+. . ..+++++|++...+|..- -.+...++++..|+..+.+.
T Consensus 95 ~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~-e~v~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVP-EAIITLLAISRIGAIHSVVF 170 (663)
T ss_dssp CTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSH-HHHHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH-HHHHHHHHHHHcCCEEEeeC
Confidence 456677765422 122 235689998866555433 3 567889999999998743 23446777778888888774
Q ss_pred -CCCHHHHHHHHHhhCceEEeeccH
Q 048242 269 -QASAKAIYKAIAEHGVTNFCAAPI 292 (430)
Q Consensus 269 -~~~~~~~~~~l~~~~vt~~~~~p~ 292 (430)
.+.+..+...+.+.++.++++.+.
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCHHHHHHHHHhcCCeEEEEccc
Confidence 688999999999999999987653
No 64
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=70.39 E-value=43 Score=33.08 Aligned_cols=94 Identities=14% Similarity=0.062 Sum_probs=67.2
Q ss_pred CCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh---hcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC-C
Q 048242 194 EWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL---TWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR-Q 269 (430)
Q Consensus 194 ~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~-~ 269 (430)
++.+|++.... .+| ....+|+..|...+..+.. ..+++++|++...+|..-. .+...++++..|+..+.+. .
T Consensus 90 pd~~Al~~~~~-~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e-~vva~lA~~~~Gav~vpl~~~ 165 (652)
T 1pg4_A 90 GDRTAIIWEGD-DTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPE-AAVAMLACARIGAVHSVIFGG 165 (652)
T ss_dssp TTSEEEEEECS-STT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECCTT
T ss_pred CCceEEEEEcC-CCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHcCcEEEecCCC
Confidence 45677764321 112 3467899988766554443 4588999999999887432 3446677778888888774 6
Q ss_pred CCHHHHHHHHHhhCceEEeecc
Q 048242 270 ASAKAIYKAIAEHGVTNFCAAP 291 (430)
Q Consensus 270 ~~~~~~~~~l~~~~vt~~~~~p 291 (430)
+.+.++...+++.++.+++...
T Consensus 166 ~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 166 FSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp SCHHHHHHHHHHHTCSEEEEES
T ss_pred CCHHHHHHHHHhcCCCEEEEcC
Confidence 7899999999999999988754
No 65
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=68.32 E-value=33 Score=33.08 Aligned_cols=97 Identities=11% Similarity=0.166 Sum_probs=69.1
Q ss_pred CCcceEEECC---------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhH--HHHHHHhhhcCCeeeeccc
Q 048242 34 PTRKSVVYES---------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAM--YEVHFGVPMTGAVLNCINF 102 (430)
Q Consensus 34 p~~~a~~~~~---------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~--~~~~lA~~~~G~~~~~l~~ 102 (430)
|+.+|++... ..+|.+.+...+..+... ..++.++|++..++|-...+ ...+++.+..|+.++.+.+
T Consensus 175 ~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~ 252 (576)
T 3gqw_A 175 PNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD--GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRT 252 (576)
T ss_dssp TTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT--TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCH
T ss_pred CCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc--ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcch
Confidence 5677777632 679999887665544322 25789999998888766543 4456777888888777654
Q ss_pred ---cCChhhHHHHHhhcCceEEEeccccHHHHH
Q 048242 103 ---RLNPLNVAIILGHAEAALVFVDQQYFALAE 132 (430)
Q Consensus 103 ---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 132 (430)
...+..+...+++.++.+++.....+..+.
T Consensus 253 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 285 (576)
T 3gqw_A 253 QDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQ 285 (576)
T ss_dssp HHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHH
T ss_pred hHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHH
Confidence 246778889999999999998876655443
No 66
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=66.80 E-value=47 Score=32.22 Aligned_cols=94 Identities=13% Similarity=0.099 Sum_probs=67.4
Q ss_pred CCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh---hcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC-
Q 048242 193 DEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL---TWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR- 268 (430)
Q Consensus 193 ~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~- 268 (430)
.++.+|++.... .| ....+|.+.|...+..+.. ..+++++|++...++.... .+...++++..|+..+.+.
T Consensus 69 ~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e-~~~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYD-FWYCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTH-HHHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH-HHHHHHHHHhCCEEEEeCCc
Confidence 567788776432 11 3467899988666554443 4588999999988886432 3445667777888888775
Q ss_pred CCCHHHHHHHHHhhCceEEeecc
Q 048242 269 QASAKAIYKAIAEHGVTNFCAAP 291 (430)
Q Consensus 269 ~~~~~~~~~~l~~~~vt~~~~~p 291 (430)
.....++...+++.++.+++..+
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEES
T ss_pred cCCHHHHHHHHHhcCCCEEEEec
Confidence 57889999999999999988754
No 67
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=66.48 E-value=29 Score=33.10 Aligned_cols=83 Identities=6% Similarity=-0.139 Sum_probs=61.3
Q ss_pred EEechHHHHHHHHHHHh---hcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC-CCCHHHHHHHHHhhCceEEe
Q 048242 213 VLVSHRAAYLMSLNVVL---TWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR-QASAKAIYKAIAEHGVTNFC 288 (430)
Q Consensus 213 v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~-~~~~~~~~~~l~~~~vt~~~ 288 (430)
..+|+..+...+..+.. ..+++.+|++...++.... .+...++++..|+..+.++ ...+.++...+++.++..++
T Consensus 47 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 125 (529)
T 2v7b_A 47 GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVA-LPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVI 125 (529)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTH-HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEE
T ss_pred CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEE
Confidence 35899988766554443 4578899999888886432 3445677778888888775 46788999999999999998
Q ss_pred eccHHHHH
Q 048242 289 AAPIVLNS 296 (430)
Q Consensus 289 ~~p~~l~~ 296 (430)
..+.....
T Consensus 126 ~~~~~~~~ 133 (529)
T 2v7b_A 126 ASGALVQN 133 (529)
T ss_dssp EEGGGHHH
T ss_pred echhhhhH
Confidence 87765443
No 68
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=64.19 E-value=47 Score=31.50 Aligned_cols=95 Identities=13% Similarity=0.050 Sum_probs=67.5
Q ss_pred CCCcceEEEC---------CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchh--HHHHHHHhhhcCCeeeecc
Q 048242 33 HPTRKSVVYE---------SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPA--MYEVHFGVPMTGAVLNCIN 101 (430)
Q Consensus 33 ~p~~~a~~~~---------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~~~l~ 101 (430)
.++.+|++.. ...+|.+.+...+..++..+ ++.++|++...+|-... ++..+++.+..|+.++...
T Consensus 153 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~ 229 (505)
T 3nyq_A 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG 229 (505)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS
T ss_pred CCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 4556666642 16799999988887766655 78889988887775433 2345788889999988764
Q ss_pred ccCChhhHHHHHhhcCceEEEeccccHHHHH
Q 048242 102 FRLNPLNVAIILGHAEAALVFVDQQYFALAE 132 (430)
Q Consensus 102 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 132 (430)
...+..+...+ +.++.+++.....+..+.
T Consensus 230 -~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~ 258 (505)
T 3nyq_A 230 -RFSTEGAAREL-NDGATMLFGVPTMYHRIA 258 (505)
T ss_dssp -SCCHHHHHHHH-TTTCCEEEECHHHHHHHH
T ss_pred -CCChHHHHHHH-hhCCeEEEehHHHHHHHH
Confidence 56666677777 678899888777665443
No 69
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=63.12 E-value=27 Score=36.51 Aligned_cols=94 Identities=11% Similarity=0.010 Sum_probs=68.3
Q ss_pred CCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh---hcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC-
Q 048242 193 DEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL---TWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR- 268 (430)
Q Consensus 193 ~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~- 268 (430)
.++.++++... + +..+|+..+...+..+.. ..++.++|++...++... -.+...+.++..|+..+.++
T Consensus 74 ~pd~~Al~~~~---~----~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~-e~~v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLINGP---T----GHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCP-EFVLSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEETT---T----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCH-HHHHHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEECC---C----CcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCH-HHHHHHHHHHHcCCEEEeeCC
Confidence 46677776422 2 246899988666554443 457899999998888643 33446677778899888885
Q ss_pred CCCHHHHHHHHHhhCceEEeeccHHH
Q 048242 269 QASAKAIYKAIAEHGVTNFCAAPIVL 294 (430)
Q Consensus 269 ~~~~~~~~~~l~~~~vt~~~~~p~~l 294 (430)
...+.++...+++.++.+++..+...
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHH
Confidence 57889999999999999999876544
No 70
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=61.36 E-value=65 Score=31.05 Aligned_cols=91 Identities=11% Similarity=-0.024 Sum_probs=65.3
Q ss_pred CCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh---hcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC-
Q 048242 193 DEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL---TWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR- 268 (430)
Q Consensus 193 ~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~- 268 (430)
.++.++++.. .-.+|++.+...+..+.. ..++..+|++...++.... .+...++++..|+..+.+.
T Consensus 88 ~pd~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl~~ 157 (570)
T 4gr5_A 88 APDAVALLHE---------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFD-MVVALLAVLKAGGGYTMLDP 157 (570)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEECC---------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHHCCEEEEcCC
Confidence 4556666531 236899988666554443 4578899999888886432 2445677778888888885
Q ss_pred CCCHHHHHHHHHhhCceEEeeccHH
Q 048242 269 QASAKAIYKAIAEHGVTNFCAAPIV 293 (430)
Q Consensus 269 ~~~~~~~~~~l~~~~vt~~~~~p~~ 293 (430)
.....++...+++.++..++.....
T Consensus 158 ~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 158 QFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred CChHHHHHHHHHhcCCCEEEecchh
Confidence 4678899999999999999876654
No 71
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=61.23 E-value=82 Score=27.77 Aligned_cols=65 Identities=20% Similarity=0.124 Sum_probs=48.3
Q ss_pred HHHcC-CCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccc
Q 048242 62 LSQLS-IGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQ 126 (430)
Q Consensus 62 L~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 126 (430)
+.+.| +++|....+....+..-..+.++|.+.|.-++.+-|...+......++..++++++++.+
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 34555 456654445566777778888888899998877767666666778899999999999864
No 72
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=59.80 E-value=44 Score=31.65 Aligned_cols=79 Identities=10% Similarity=-0.020 Sum_probs=59.8
Q ss_pred EechHHHHHHHHHHHh---hcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC-CCCHHHHHHHHHhhCceEEee
Q 048242 214 LVSHRAAYLMSLNVVL---TWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR-QASAKAIYKAIAEHGVTNFCA 289 (430)
Q Consensus 214 ~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~-~~~~~~~~~~l~~~~vt~~~~ 289 (430)
.+|++.|...+..+.. ..++..+|++...++... -.+...++++..|+..+.++ .....++...+++.++.+++.
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSV-EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH-HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 5899988766554443 347889999988888643 23445677778888888885 467889999999999999988
Q ss_pred ccHH
Q 048242 290 APIV 293 (430)
Q Consensus 290 ~p~~ 293 (430)
.+..
T Consensus 107 ~~~~ 110 (503)
T 4fuq_A 107 DPSK 110 (503)
T ss_dssp CGGG
T ss_pred Cchh
Confidence 7653
No 73
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=59.48 E-value=91 Score=27.30 Aligned_cols=64 Identities=13% Similarity=0.043 Sum_probs=46.8
Q ss_pred HHHcCC-CCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccc
Q 048242 62 LSQLSI-GPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQ 126 (430)
Q Consensus 62 L~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 126 (430)
+.+.|. ++|+.|+. ...+..-..+.++|.+.|.-++.+-|...+..-...++..++++++++.+
T Consensus 58 a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 58 AEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 344553 66665544 66667777778888899988777766665666777889999999999864
No 74
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=59.04 E-value=88 Score=29.04 Aligned_cols=63 Identities=21% Similarity=0.152 Sum_probs=50.0
Q ss_pred HHcCC-CCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEecc
Q 048242 63 SQLSI-GPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQ 125 (430)
Q Consensus 63 ~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~ 125 (430)
.++|. ++|....+....+..-..+.+++.+.|.-++.+-|...+......++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 45564 6775556666778888888889999999888777777777778889999999999975
No 75
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=57.44 E-value=98 Score=27.02 Aligned_cols=64 Identities=13% Similarity=0.031 Sum_probs=46.6
Q ss_pred HHHcCC-CCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccc
Q 048242 62 LSQLSI-GPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQ 126 (430)
Q Consensus 62 L~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 126 (430)
+.+.|. ++|+.|+ ....+-.-..+.++|.+.|.-++.+-|...+..-...++..++++++++.+
T Consensus 56 a~~~g~~~~g~~vv-~assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 56 AEKAGKLKPGDTIV-EPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHTTCCCTTCEEE-EECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEE-EeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 344453 6666544 366677777888888899988777666655566677889999999999864
No 76
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=55.09 E-value=42 Score=32.95 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=68.2
Q ss_pred CCCcceEEEC---------CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhH-HHHHHHhhhcCCeeeecc-
Q 048242 33 HPTRKSVVYE---------SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAM-YEVHFGVPMTGAVLNCIN- 101 (430)
Q Consensus 33 ~p~~~a~~~~---------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~~~l~- 101 (430)
.|+.+|++.. +..+|.+.+...+.. ....++.++|++..+.+-+.+. +..+++.+..|+..+..+
T Consensus 162 ~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 237 (620)
T 4dg8_A 162 AADQIAYINFSSGTTGRPKAIACTHAGITRLCLG----QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL 237 (620)
T ss_dssp CTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS----CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS
T ss_pred CCCCeEEEEECCCccccCeEEEEchHHHHHHHHH----HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCcc
Confidence 3566676642 167898887544322 2234788999999888776543 445788888998877663
Q ss_pred ccCChhhHHHHHhhcCceEEEeccccHHHHH
Q 048242 102 FRLNPLNVAIILGHAEAALVFVDQQYFALAE 132 (430)
Q Consensus 102 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 132 (430)
....+..+...+++.++.+++.....+..+.
T Consensus 238 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~ 268 (620)
T 4dg8_A 238 GPLDPGVLRQLIGERGADSAWLTASLFNTLV 268 (620)
T ss_dssp SSCCHHHHHHHHHTTCCCEEEEEHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCcEEEccHHHHHHHH
Confidence 2567888999999999999998877665543
No 77
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=53.70 E-value=40 Score=30.06 Aligned_cols=79 Identities=8% Similarity=0.053 Sum_probs=53.2
Q ss_pred eeeeHHHHHHHHHHHH---HHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceE
Q 048242 44 KHYTWQQTYQRCRRLA---SALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAAL 120 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la---~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ 120 (430)
..+++.+......... +.|...++++|++|+|+...+.-.+++++|....|+.++-+... + +-..+.++.+++.
T Consensus 135 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~-~r~~~~~~~Ga~~ 211 (348)
T 4eez_A 135 DGLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--Q-DKLNLAKKIGADV 211 (348)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--H-HHHHHHHHTTCSE
T ss_pred CCCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--H-HHhhhhhhcCCeE
Confidence 3567777654433322 23445589999999999887777777888777777777666533 3 3345677888888
Q ss_pred EEecc
Q 048242 121 VFVDQ 125 (430)
Q Consensus 121 vi~~~ 125 (430)
++...
T Consensus 212 ~i~~~ 216 (348)
T 4eez_A 212 TINSG 216 (348)
T ss_dssp EEEC-
T ss_pred EEeCC
Confidence 87654
No 78
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=50.86 E-value=50 Score=29.63 Aligned_cols=55 Identities=9% Similarity=0.057 Sum_probs=42.8
Q ss_pred EEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccH
Q 048242 74 SVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYF 128 (430)
Q Consensus 74 ~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 128 (430)
.+....+..-..+.++|.+.|.-++.+-|...+......++..++++++++..+.
T Consensus 79 vv~~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~~ 133 (346)
T 3l6b_A 79 VVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDE 133 (346)
T ss_dssp EEEECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSHH
T ss_pred EEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHH
Confidence 3444567777888888999998877777776777778889999999999987643
No 79
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=48.52 E-value=69 Score=30.35 Aligned_cols=78 Identities=8% Similarity=-0.130 Sum_probs=57.7
Q ss_pred EEechHHHHHHHHHHHh---hcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC-CCCHHHHHHHHHhhCceEEe
Q 048242 213 VLVSHRAAYLMSLNVVL---TWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR-QASAKAIYKAIAEHGVTNFC 288 (430)
Q Consensus 213 v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~-~~~~~~~~~~l~~~~vt~~~ 288 (430)
-.+|+..+...+..+.. ..++..+|++...++... -.+...++++..|+..+.+. .....++...+++.++..++
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~-~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii 106 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTY-DMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLII 106 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSH-HHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEE
T ss_pred CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEE
Confidence 35799988766555443 457888998888877643 23445677778888888774 57889999999999999988
Q ss_pred ecc
Q 048242 289 AAP 291 (430)
Q Consensus 289 ~~p 291 (430)
...
T Consensus 107 ~~~ 109 (521)
T 3l8c_A 107 AIE 109 (521)
T ss_dssp ESS
T ss_pred ecC
Confidence 654
No 80
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=47.54 E-value=53 Score=31.57 Aligned_cols=86 Identities=6% Similarity=-0.111 Sum_probs=62.2
Q ss_pred eeeeHHHHHHHHHHHHHHHH-----HcCCCCCCeEEEEcCCchhH-HHHHHHhhhcCCeeeeccccCChhhHHHHHhhcC
Q 048242 44 KHYTWQQTYQRCRRLASALS-----QLSIGPGTAVSVLSPNVPAM-YEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAE 117 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~-----~~gv~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~ 117 (430)
..+|.+.+...+..++..+. ...+...+++....+..... +..++..+..|+..+........+.+...+++.+
T Consensus 193 V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~ 272 (562)
T 3ite_A 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELG 272 (562)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTT
T ss_pred EEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcC
Confidence 57999999988888777664 23566778777776655433 4446777888988776655444567888899999
Q ss_pred ceEEEeccccHH
Q 048242 118 AALVFVDQQYFA 129 (430)
Q Consensus 118 ~~~vi~~~~~~~ 129 (430)
+.+++.....+.
T Consensus 273 ~t~~~~~P~~l~ 284 (562)
T 3ite_A 273 VTHAGIVPSLLD 284 (562)
T ss_dssp CCEEEECHHHHH
T ss_pred CCEEEcCHHHHh
Confidence 999988776443
No 81
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=47.24 E-value=1.5e+02 Score=26.12 Aligned_cols=64 Identities=13% Similarity=0.187 Sum_probs=48.1
Q ss_pred HHHcC-CCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccc
Q 048242 62 LSQLS-IGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQ 126 (430)
Q Consensus 62 L~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 126 (430)
+.+.| +++++.|+. ...+..-..+.+++.+.|.-++.+-|...+......++..++++++++..
T Consensus 64 a~~~g~l~~~~~vv~-aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 64 AEADGLLRPGATILE-PTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHHcCCCCCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34445 466776544 45677778888888999988877777766677788899999999999863
No 82
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=44.41 E-value=5.3 Score=39.05 Aligned_cols=31 Identities=13% Similarity=-0.041 Sum_probs=25.6
Q ss_pred CCCCCeeEEEeCCCCC-CCCceEEechHHHHH
Q 048242 192 RDEWQSIALGYTSGTT-ANPKGVLVSHRAAYL 222 (430)
Q Consensus 192 ~~~~~~~~i~~TSGtt-G~pK~v~~t~~~l~~ 222 (430)
..++.+..+..||||| |+||-+.+|.+.+-.
T Consensus 96 l~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 96 LSAHPISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp SCSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 3566778899999999 789999999987643
No 83
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=43.71 E-value=1.7e+02 Score=25.62 Aligned_cols=64 Identities=11% Similarity=0.043 Sum_probs=46.7
Q ss_pred HHHcCC-CCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccc
Q 048242 62 LSQLSI-GPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQ 126 (430)
Q Consensus 62 L~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 126 (430)
+.+.|. ++|+.| +....+..-..+.++|.+.|.-++.+-|...+......++..++++++++.+
T Consensus 53 a~~~g~~~~~~~v-v~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 53 AEKDGTLTKGKEI-VDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHTTSSCTTCEE-EESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEE-EEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 344554 566554 4445677777788888899988777666656666778899999999999875
No 84
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=43.58 E-value=1.8e+02 Score=25.89 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=46.2
Q ss_pred HHHcC-CCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccc
Q 048242 62 LSQLS-IGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQ 126 (430)
Q Consensus 62 L~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 126 (430)
+.+.| +++|+.|+.. ..+-.-..+.++|.+.|.-++.+-|...+......++..++++++++.+
T Consensus 69 a~~~g~~~~g~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 69 AIKDGRLKPGMEIIES-TSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHHHTSSCTTCEEEEE-CSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 33445 4677655444 4566677777888889988777766666666778899999999999864
No 85
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=42.74 E-value=1.5e+02 Score=26.22 Aligned_cols=78 Identities=10% Similarity=0.060 Sum_probs=50.8
Q ss_pred eeHHHHHHHHHH---HHHHHHHc--CCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceE
Q 048242 46 YTWQQTYQRCRR---LASALSQL--SIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAAL 120 (430)
Q Consensus 46 ~Ty~el~~~~~~---la~~L~~~--gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ 120 (430)
+++.+....... .-+.|.+. ++++|++|+|......-.+++++|-..-|+.++.++.. .+ -..++++.+++.
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~--~~-~~~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLD--DD-RLALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESC--HH-HHHHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC--HH-HHHHHHHcCCCE
Confidence 788776544332 22344443 78999999999876667777777776646666655432 33 344667888888
Q ss_pred EEeccc
Q 048242 121 VFVDQQ 126 (430)
Q Consensus 121 vi~~~~ 126 (430)
++...+
T Consensus 220 ~i~~~~ 225 (345)
T 3jv7_A 220 AVKSGA 225 (345)
T ss_dssp EEECST
T ss_pred EEcCCC
Confidence 876554
No 86
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=42.13 E-value=85 Score=27.77 Aligned_cols=78 Identities=9% Similarity=0.077 Sum_probs=50.6
Q ss_pred eeeeHHHHHHHHHH---HHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceE
Q 048242 44 KHYTWQQTYQRCRR---LASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAAL 120 (430)
Q Consensus 44 ~~~Ty~el~~~~~~---la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ 120 (430)
..+++.+....... .-+.|...++++|++|+|....+.-.+++++|-. .|+.++.+.. +++. ...+++.+++.
T Consensus 138 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~-~Ga~Vi~~~~--~~~~-~~~~~~lGa~~ 213 (340)
T 3s2e_A 138 DKVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARA-MGLRVAAVDI--DDAK-LNLARRLGAEV 213 (340)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHHH-TTCEEEEEES--CHHH-HHHHHHTTCSE
T ss_pred CCCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeC--CHHH-HHHHHHcCCCE
Confidence 45777776533222 1234455589999999998876667777777764 5887666543 3333 34567888888
Q ss_pred EEecc
Q 048242 121 VFVDQ 125 (430)
Q Consensus 121 vi~~~ 125 (430)
++...
T Consensus 214 ~i~~~ 218 (340)
T 3s2e_A 214 AVNAR 218 (340)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 87654
No 87
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=41.25 E-value=1.8e+02 Score=25.27 Aligned_cols=62 Identities=11% Similarity=-0.016 Sum_probs=44.0
Q ss_pred HHHcCC-CCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccc
Q 048242 62 LSQLSI-GPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQ 126 (430)
Q Consensus 62 L~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 126 (430)
+.+.|. +++ .+....+..-..+.+++.+.|.-++.+-|...+..-...++..++++++++.+
T Consensus 58 a~~~g~~~~~---vv~aSsGN~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 120 (303)
T 1o58_A 58 AEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGE 120 (303)
T ss_dssp HHHTTCCTTC---EEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCC---EEEECchHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 344454 344 33456666677777888899987777666655666777899999999999864
No 88
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=38.51 E-value=86 Score=28.28 Aligned_cols=57 Identities=14% Similarity=-0.007 Sum_probs=44.3
Q ss_pred EEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHH
Q 048242 73 VSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFA 129 (430)
Q Consensus 73 V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 129 (430)
..+....+..-..+.++|.+.|.-++.+-|...+......++..++++++++..+.+
T Consensus 95 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~~ 151 (364)
T 4h27_A 95 HFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGELLDE 151 (364)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECSSTTH
T ss_pred EEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECCCHHH
Confidence 344555577778888888999988877777777777888899999999999875443
No 89
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=37.84 E-value=91 Score=27.31 Aligned_cols=77 Identities=14% Similarity=0.102 Sum_probs=49.1
Q ss_pred eeeeHHHHHHHHHHH--H-HHHHHcCCCCCCeEEEEc-CCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCce
Q 048242 44 KHYTWQQTYQRCRRL--A-SALSQLSIGPGTAVSVLS-PNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAA 119 (430)
Q Consensus 44 ~~~Ty~el~~~~~~l--a-~~L~~~gv~~g~~V~i~~-~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~ 119 (430)
..+++.+........ | +.|...++++|++|+|.. ....-.+++++|- ..|+.++.+. +.++ ..++++.+++
T Consensus 124 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~ 198 (321)
T 3tqh_A 124 EKLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAE 198 (321)
T ss_dssp TTSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCS
T ss_pred CCCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCC
Confidence 457777766543331 2 334456899999999996 5556666666665 5688766553 3444 5567778888
Q ss_pred EEEecc
Q 048242 120 LVFVDQ 125 (430)
Q Consensus 120 ~vi~~~ 125 (430)
.++...
T Consensus 199 ~~i~~~ 204 (321)
T 3tqh_A 199 QCINYH 204 (321)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 776543
No 90
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=37.80 E-value=96 Score=27.55 Aligned_cols=75 Identities=15% Similarity=0.019 Sum_probs=47.8
Q ss_pred eeeeHHHHHHHHHHH---HHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceE
Q 048242 44 KHYTWQQTYQRCRRL---ASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAAL 120 (430)
Q Consensus 44 ~~~Ty~el~~~~~~l---a~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ 120 (430)
..+++.+........ -+.|.+.++++|++|+|....+.-.+++++|- ..|+.++.+... ++.+ ..+++.+++.
T Consensus 148 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~--~~~~-~~~~~lGa~~ 223 (348)
T 3two_A 148 KNAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARN--EHKK-QDALSMGVKH 223 (348)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSS--STTH-HHHHHTTCSE
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCC--HHHH-HHHHhcCCCe
Confidence 457777765332221 23455668999999999987556666666665 468876665433 3333 3556788887
Q ss_pred EE
Q 048242 121 VF 122 (430)
Q Consensus 121 vi 122 (430)
++
T Consensus 224 v~ 225 (348)
T 3two_A 224 FY 225 (348)
T ss_dssp EE
T ss_pred ec
Confidence 77
No 91
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=37.30 E-value=2.4e+02 Score=25.64 Aligned_cols=58 Identities=9% Similarity=-0.077 Sum_probs=45.3
Q ss_pred EEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHH
Q 048242 73 VSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFAL 130 (430)
Q Consensus 73 V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 130 (430)
..+....+..-..+.++|.+.|.-++.+-|...+......++..++++++++..+.+.
T Consensus 114 ~vv~aSsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~~a 171 (398)
T 4d9i_A 114 TFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDDT 171 (398)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSSCHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECCCHHHH
Confidence 3444667777788888899999988777777777777888999999999998755443
No 92
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=36.88 E-value=92 Score=26.73 Aligned_cols=56 Identities=9% Similarity=0.035 Sum_probs=42.2
Q ss_pred HHHHHHHhhCCCcceEEECC------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhH
Q 048242 24 WFLERAATVHPTRKSVVYES------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAM 83 (430)
Q Consensus 24 ~~l~~~~~~~p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~ 83 (430)
.++.+..+..|+...+.+.| ...|..++.+++.+.+..|.+.|++ ..++.-|+...
T Consensus 19 tv~~~i~~~lP~~~~iy~~D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~~----~IVIACNTa~~ 80 (269)
T 3ist_A 19 TVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIK----MLVIACNTATA 80 (269)
T ss_dssp HHHHHHHHHCTTCCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHHHHTTCS----EEEECCHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCCCccH
Confidence 45666777889987777654 6789999999999999999998763 44455555554
No 93
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=36.61 E-value=2.3e+02 Score=25.18 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=51.2
Q ss_pred eeeeHHHHH---HHHHH---HHHHHHH--cCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhh
Q 048242 44 KHYTWQQTY---QRCRR---LASALSQ--LSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGH 115 (430)
Q Consensus 44 ~~~Ty~el~---~~~~~---la~~L~~--~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~ 115 (430)
..+++.+.. -.... .-+.|.+ .++++|++|+|......-.+++++|-...|+.++-+.. +++. ...+++
T Consensus 153 ~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~-~~~~~~ 229 (359)
T 1h2b_A 153 KDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEK-LKLAER 229 (359)
T ss_dssp TTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHH-HHHHHH
T ss_pred CCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHH-HHHHHH
Confidence 457777765 22111 1234455 68999999999988666777777776544886665543 2333 445678
Q ss_pred cCceEEEeccc
Q 048242 116 AEAALVFVDQQ 126 (430)
Q Consensus 116 ~~~~~vi~~~~ 126 (430)
.+++.++...+
T Consensus 230 lGa~~vi~~~~ 240 (359)
T 1h2b_A 230 LGADHVVDARR 240 (359)
T ss_dssp TTCSEEEETTS
T ss_pred hCCCEEEeccc
Confidence 89988876544
No 94
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=36.57 E-value=1.1e+02 Score=27.27 Aligned_cols=80 Identities=14% Similarity=0.046 Sum_probs=49.6
Q ss_pred eeeeHHHHHHHH--HHHH-HHHHH-cCCCCCCeEEEEcC-CchhHHHHHHHhhhcCCeee-eccccCChhhHHHHHhhcC
Q 048242 44 KHYTWQQTYQRC--RRLA-SALSQ-LSIGPGTAVSVLSP-NVPAMYEVHFGVPMTGAVLN-CINFRLNPLNVAIILGHAE 117 (430)
Q Consensus 44 ~~~Ty~el~~~~--~~la-~~L~~-~gv~~g~~V~i~~~-n~~~~~~~~lA~~~~G~~~~-~l~~~~~~~~l~~~l~~~~ 117 (430)
..+++.+..... -..| +.|.+ .++++|++|+|... .+.-.+++++|-. .|+..+ ........++....+++.+
T Consensus 138 ~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~-~Ga~vi~~~~~~~~~~~~~~~~~~lG 216 (357)
T 1zsy_A 138 SDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAA-LGLRTINVVRDRPDIQKLSDRLKSLG 216 (357)
T ss_dssp SSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHH-HTCEEEEEECCCSCHHHHHHHHHHTT
T ss_pred CCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHH-cCCEEEEEecCccchHHHHHHHHhcC
Confidence 357777765431 1222 23444 48999999999987 4566666676654 687544 3333333344556678889
Q ss_pred ceEEEec
Q 048242 118 AALVFVD 124 (430)
Q Consensus 118 ~~~vi~~ 124 (430)
++.++..
T Consensus 217 a~~vi~~ 223 (357)
T 1zsy_A 217 AEHVITE 223 (357)
T ss_dssp CSEEEEH
T ss_pred CcEEEec
Confidence 8888753
No 95
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=35.82 E-value=15 Score=35.73 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=25.2
Q ss_pred CCCCCeeEEEeCCCCC-CCCceEEechHHHHH
Q 048242 192 RDEWQSIALGYTSGTT-ANPKGVLVSHRAAYL 222 (430)
Q Consensus 192 ~~~~~~~~i~~TSGtt-G~pK~v~~t~~~l~~ 222 (430)
..++.+.....||||| |++|-+..|.+.+-.
T Consensus 95 L~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 95 LTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred cCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 4566677888999999 779999999987643
No 96
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=35.24 E-value=97 Score=27.57 Aligned_cols=78 Identities=14% Similarity=0.024 Sum_probs=49.3
Q ss_pred eeeeHHHHHHHHHHH---HHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC-eeeeccccCChhhHHHHHhhcCce
Q 048242 44 KHYTWQQTYQRCRRL---ASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA-VLNCINFRLNPLNVAIILGHAEAA 119 (430)
Q Consensus 44 ~~~Ty~el~~~~~~l---a~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~-~~~~l~~~~~~~~l~~~l~~~~~~ 119 (430)
..+++.+.......+ .+.+...++++|++|+|+..-..-.+++++|- ..|+ .++.++.. ++-..++++.+++
T Consensus 138 ~~~~~~~aa~~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~~Vi~~~~~---~~~~~~~~~lGa~ 213 (352)
T 3fpc_A 138 KEIPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGAN-HLGAGRIFAVGSR---KHCCDIALEYGAT 213 (352)
T ss_dssp TTSCHHHHTTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHH-TTTCSSEEEECCC---HHHHHHHHHHTCC
T ss_pred CCCCHHHHhhccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCcEEEEECCC---HHHHHHHHHhCCc
Confidence 457777765332211 23345668999999999986556666666665 5687 45555432 3334567788888
Q ss_pred EEEecc
Q 048242 120 LVFVDQ 125 (430)
Q Consensus 120 ~vi~~~ 125 (430)
.++...
T Consensus 214 ~vi~~~ 219 (352)
T 3fpc_A 214 DIINYK 219 (352)
T ss_dssp EEECGG
T ss_pred eEEcCC
Confidence 877643
No 97
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=34.47 E-value=2.3e+02 Score=24.55 Aligned_cols=64 Identities=11% Similarity=0.079 Sum_probs=46.5
Q ss_pred HHHcC-CCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccc
Q 048242 62 LSQLS-IGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQ 126 (430)
Q Consensus 62 L~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 126 (430)
+.+.| +++|+.|+.. ..+-.-..+.+++.+.|.-++.+-|...+......++..++++++++.+
T Consensus 52 a~~~g~~~~g~~vv~~-ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 116 (303)
T 2v03_A 52 AEKRGEIKPGDVLIEA-TSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKE 116 (303)
T ss_dssp HHHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHcCCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 33445 3667655444 4566677777888899998877777666666778899999999999863
No 98
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=34.37 E-value=67 Score=27.57 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcCC
Q 048242 56 RRLASALSQLSIGPGTAVSVLSPN 79 (430)
Q Consensus 56 ~~la~~L~~~gv~~g~~V~i~~~n 79 (430)
+.+.+.|.++||++||.|.+...=
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl 41 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSL 41 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECT
T ss_pred HHHHHHHHHcCCCCCCEEEEEech
Confidence 567888999999999999988653
No 99
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=34.33 E-value=1.2e+02 Score=26.63 Aligned_cols=56 Identities=14% Similarity=0.032 Sum_probs=42.3
Q ss_pred EEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHH
Q 048242 74 SVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFA 129 (430)
Q Consensus 74 ~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 129 (430)
.+....+..-..+.++|.+.|.-++.+-|...+......++..++++++++..+.+
T Consensus 57 vv~~ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~~~ 112 (318)
T 2rkb_A 57 LVCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDE 112 (318)
T ss_dssp EEECCCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSSHHH
T ss_pred EEEECCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhcCCEEEEECCCHHH
Confidence 34445577777778888899988777767666667778889999999998875433
No 100
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=34.24 E-value=17 Score=35.29 Aligned_cols=31 Identities=13% Similarity=-0.013 Sum_probs=25.0
Q ss_pred CCCCCeeEEEeCCCCC-CCCceEEechHHHHH
Q 048242 192 RDEWQSIALGYTSGTT-ANPKGVLVSHRAAYL 222 (430)
Q Consensus 192 ~~~~~~~~i~~TSGtt-G~pK~v~~t~~~l~~ 222 (430)
..++.+.+..-||||| |++|-+.+|.+.+-.
T Consensus 90 L~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~ 121 (581)
T 4eql_A 90 ISARTITGFLLSSGTSGGAQKMMPWNNKYLDN 121 (581)
T ss_dssp TCSSCCCEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCccccccCHHHHHH
Confidence 3456677888999999 679999999997633
No 101
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=34.05 E-value=1.1e+02 Score=27.56 Aligned_cols=78 Identities=14% Similarity=0.052 Sum_probs=47.8
Q ss_pred ee-eeHHHHHHHHHHH---HHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCce
Q 048242 44 KH-YTWQQTYQRCRRL---ASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAA 119 (430)
Q Consensus 44 ~~-~Ty~el~~~~~~l---a~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~ 119 (430)
.. +++.+........ -+.|.+.++++|++|+|....+.-.+++++|-. .|+.++.+.. +++.+. .+++.+++
T Consensus 165 ~~~ls~~~aa~l~~~~~tA~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~-~Ga~Vi~~~~--~~~~~~-~a~~lGa~ 240 (369)
T 1uuf_A 165 HPQEQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHA-MGAHVVAFTT--SEAKRE-AAKALGAD 240 (369)
T ss_dssp SCGGGHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHH-TTCEEEEEES--SGGGHH-HHHHHTCS
T ss_pred CCCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEeC--CHHHHH-HHHHcCCc
Confidence 45 7777754322111 234555689999999999876666777777654 5877555543 333333 44567887
Q ss_pred EEEecc
Q 048242 120 LVFVDQ 125 (430)
Q Consensus 120 ~vi~~~ 125 (430)
.++...
T Consensus 241 ~vi~~~ 246 (369)
T 1uuf_A 241 EVVNSR 246 (369)
T ss_dssp EEEETT
T ss_pred EEeccc
Confidence 776543
No 102
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=33.79 E-value=2.9e+02 Score=25.57 Aligned_cols=65 Identities=12% Similarity=-0.066 Sum_probs=48.9
Q ss_pred eEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHH
Q 048242 72 AVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALK 136 (430)
Q Consensus 72 ~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~ 136 (430)
...+....+..-..+-+++.+.|.-++.+-|...+..-...++..++++++++..+.+....+.+
T Consensus 161 ~~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~~~~~a~~~a~~ 225 (442)
T 3ss7_X 161 YSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAVEEGRK 225 (442)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESSCHHHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHH
Confidence 35666777788888888899999887777676666777888999999999998765444443333
No 103
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=33.33 E-value=2.4e+02 Score=24.41 Aligned_cols=65 Identities=17% Similarity=0.073 Sum_probs=46.4
Q ss_pred HHHcC-CCCCCe-EEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccc
Q 048242 62 LSQLS-IGPGTA-VSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQ 126 (430)
Q Consensus 62 L~~~g-v~~g~~-V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 126 (430)
+.+.| +++|+. ..+....+-.-..+.+++.+.|.-++.+-|...+..-...++..++++++++.+
T Consensus 51 a~~~g~~~~g~~~~vv~assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 51 AEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHTTSCCTTSCCEEEESCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHcCCCCCCCccEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 33444 466661 334456667777778888899988777666655666777899999999999865
No 104
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=33.26 E-value=1.1e+02 Score=27.18 Aligned_cols=80 Identities=15% Similarity=0.068 Sum_probs=49.7
Q ss_pred eeeeHHHHHHHHHHH---HHHHHHcCCC-CCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCce
Q 048242 44 KHYTWQQTYQRCRRL---ASALSQLSIG-PGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAA 119 (430)
Q Consensus 44 ~~~Ty~el~~~~~~l---a~~L~~~gv~-~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~ 119 (430)
..+++.+........ -+.|.+.+++ +|++|+|......-..++++|-. .|+.++.+... ++.+....++.+++
T Consensus 151 ~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~~--~~~~~~~~~~lGa~ 227 (357)
T 2cf5_A 151 EGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSS--NKKREEALQDLGAD 227 (357)
T ss_dssp SSCCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESS--TTHHHHHHTTSCCS
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC--hHHHHHHHHHcCCc
Confidence 457777654322111 1334556888 99999999876666777777664 58866555433 44444444578888
Q ss_pred EEEeccc
Q 048242 120 LVFVDQQ 126 (430)
Q Consensus 120 ~vi~~~~ 126 (430)
.++...+
T Consensus 228 ~vi~~~~ 234 (357)
T 2cf5_A 228 DYVIGSD 234 (357)
T ss_dssp CEEETTC
T ss_pred eeecccc
Confidence 7776543
No 105
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=33.07 E-value=97 Score=20.57 Aligned_cols=46 Identities=9% Similarity=-0.005 Sum_probs=31.4
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 44 KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
..+.+.++.+. +.+.+..+++.|.++|.++.....+...+...|..
T Consensus 22 ~~ip~~~l~~~-------~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKER-------IATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHHH-------HHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHHH-------HHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 56677766543 33446677788888888887776666667777753
No 106
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=32.59 E-value=1.1e+02 Score=27.55 Aligned_cols=56 Identities=14% Similarity=0.066 Sum_probs=28.1
Q ss_pred cCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeecccc-----CChhhHHHHHhhcC--ceEEEe
Q 048242 65 LSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFR-----LNPLNVAIILGHAE--AALVFV 123 (430)
Q Consensus 65 ~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~-----~~~~~l~~~l~~~~--~~~vi~ 123 (430)
.++++||.|.+-.+.... ..-++...|+.++.++.+ ...+.+...+..-+ .++|+.
T Consensus 73 l~~~~Gd~Vi~~~~~~~~---~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 73 KKRKKGKYALMPSFTFPA---TPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HSCTTCCEEEEESSSCTH---HHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred cCCCCcCEEEECCCCcHH---HHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 356677776655443332 223445566665544322 24555666553333 555553
No 107
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=32.57 E-value=2.6e+02 Score=24.68 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=33.9
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeecccc-------CChhhHHHHHhhcCceEEEec
Q 048242 67 IGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFR-------LNPLNVAIILGHAEAALVFVD 124 (430)
Q Consensus 67 v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~-------~~~~~l~~~l~~~~~~~vi~~ 124 (430)
+++||.|.+..+.... ...++...|+.++.++.. ...+.+...++..++++|+..
T Consensus 106 ~~~gd~vl~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~ 167 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNM---FYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC 167 (391)
T ss_dssp SCTTCEEEECSSCCHH---HHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCCeEEECCCCcHH---HHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE
Confidence 3577776665544333 333455667766665442 567788888876677777653
No 108
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=31.73 E-value=1.1e+02 Score=27.10 Aligned_cols=60 Identities=8% Similarity=0.143 Sum_probs=36.5
Q ss_pred CCCCCCeEEEEcCCch------hHHHHHHHhh-hcCCeeeeccc------------cCChhhHHHHHhhcCceEEEecc
Q 048242 66 SIGPGTAVSVLSPNVP------AMYEVHFGVP-MTGAVLNCINF------------RLNPLNVAIILGHAEAALVFVDQ 125 (430)
Q Consensus 66 gv~~g~~V~i~~~n~~------~~~~~~lA~~-~~G~~~~~l~~------------~~~~~~l~~~l~~~~~~~vi~~~ 125 (430)
-+++||+|+|+.|.+. +.+-.....+ ..|..++.-.. ...++++...+..-.++.|++..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 4789999999998853 2222222222 34655543221 11245678888888889999863
No 109
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=31.51 E-value=1.8e+02 Score=23.57 Aligned_cols=87 Identities=16% Similarity=0.087 Sum_probs=51.6
Q ss_pred EEEeccCc-hhhhhhHHHHHHHh-hcceEEEeC-CCCHHHHHHHHHhhCceEEeecc------HHHHHHHcCCCCCCCCC
Q 048242 238 VYLWTLPI-FHGNGWCFTWSLAA-LCGTSVMLR-QASAKAIYKAIAEHGVTNFCAAP------IVLNSIVNAPPEDTILP 308 (430)
Q Consensus 238 ~~~~~~pl-~h~~gl~~~~~~l~-~g~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~p------~~l~~l~~~~~~~~~~~ 308 (430)
+++.+.+- .|..|....-..+. .|-.++.+. ...++.+.+.++++++..+..+- ..+..+++..+....
T Consensus 91 vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~~~-- 168 (210)
T 1y80_A 91 IVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALIAAGL-- 168 (210)
T ss_dssp EEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHHHTTC--
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHhcCC--
Confidence 44444443 78888776555554 455555554 45789999999999998886532 233444333221110
Q ss_pred CCceeEEeecCCCCCHHHH
Q 048242 309 LPHVVNVNTGGSPPPPPIL 327 (430)
Q Consensus 309 l~~lr~v~~~G~~l~~~~~ 327 (430)
.+.++ +++||...+++..
T Consensus 169 ~~~~~-v~vGG~~~~~~~~ 186 (210)
T 1y80_A 169 RDRVK-VIVGGAPLSQDFA 186 (210)
T ss_dssp GGGCE-EEEESTTCCHHHH
T ss_pred CCCCe-EEEECCCCCHHHH
Confidence 12344 6677888886654
No 110
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=31.28 E-value=1.2e+02 Score=27.32 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=39.5
Q ss_pred HHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC-eeeeccccCChhhHHHHHhhcCceEEEec
Q 048242 61 ALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA-VLNCINFRLNPLNVAIILGHAEAALVFVD 124 (430)
Q Consensus 61 ~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~-~~~~l~~~~~~~~l~~~l~~~~~~~vi~~ 124 (430)
.|...++++|++|+|......-.+++++|- ..|+ .++.+... ++ -..++++.+++.++..
T Consensus 174 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~--~~-~~~~a~~lGa~~vi~~ 234 (370)
T 4ej6_A 174 GVDLSGIKAGSTVAILGGGVIGLLTVQLAR-LAGATTVILSTRQ--AT-KRRLAEEVGATATVDP 234 (370)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSC--HH-HHHHHHHHTCSEEECT
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECCC--HH-HHHHHHHcCCCEEECC
Confidence 345568999999999987555666666665 5687 55555432 33 3446677788777653
No 111
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Probab=31.23 E-value=1.4e+02 Score=27.06 Aligned_cols=57 Identities=14% Similarity=-0.033 Sum_probs=43.1
Q ss_pred EEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHH
Q 048242 73 VSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFA 129 (430)
Q Consensus 73 V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 129 (430)
..+....+..-..+.++|.+.|.-++.+-|...+......++..++++++++..+.+
T Consensus 95 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~ 151 (372)
T 1p5j_A 95 HFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELLDE 151 (372)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSCHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhcCCEEEEECCCHHH
Confidence 344445577777778888999988877777666677788899999999999875433
No 112
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Probab=31.15 E-value=1.4e+02 Score=26.71 Aligned_cols=57 Identities=9% Similarity=-0.113 Sum_probs=41.4
Q ss_pred EEEEcCCchhHHHHHHHhhhcCCeeeeccccC-ChhhHHHHHhhcCceEEEeccccHH
Q 048242 73 VSVLSPNVPAMYEVHFGVPMTGAVLNCINFRL-NPLNVAIILGHAEAALVFVDQQYFA 129 (430)
Q Consensus 73 V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~-~~~~l~~~l~~~~~~~vi~~~~~~~ 129 (430)
..+....+..-..+.+++.+.|.-++.+-|.. .+..-...++..++++++++.++.+
T Consensus 79 ~vv~~SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~V~~v~~~~~~ 136 (351)
T 3aey_A 79 AVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNFDD 136 (351)
T ss_dssp EEEESCSSHHHHHHHHHHHHHTSEEEEEEETTCSCHHHHHHHHHTTCEEEEEESCHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHcCCEEEEECCCHHH
Confidence 34445566666767788899999877766654 5556667889999999999876433
No 113
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=30.81 E-value=87 Score=20.20 Aligned_cols=28 Identities=7% Similarity=0.039 Sum_probs=13.0
Q ss_pred HHHHHhhCCCcceEEECCeeeeHHHHHH
Q 048242 26 LERAATVHPTRKSVVYESKHYTWQQTYQ 53 (430)
Q Consensus 26 l~~~~~~~p~~~a~~~~~~~~Ty~el~~ 53 (430)
+......+|+.+.++..++..+|+.+.+
T Consensus 36 l~~~~~~~~~~~V~I~aD~~~~y~~vv~ 63 (74)
T 2jwk_A 36 SRQEFDKDNNTLFLVGGAKEVPYEEVIK 63 (74)
T ss_dssp HHHHHHHCTTCCEEEEECTTSCHHHHHH
T ss_pred HHHHHhhCCCceEEEEcCCCCCHHHHHH
Confidence 3333344444444444455555544443
No 114
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=30.64 E-value=1.3e+02 Score=26.67 Aligned_cols=77 Identities=16% Similarity=0.077 Sum_probs=47.8
Q ss_pred eeeeHHHHHHHHHHHH---HHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC-eeeeccccCChhhHHHHHhhcCce
Q 048242 44 KHYTWQQTYQRCRRLA---SALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA-VLNCINFRLNPLNVAIILGHAEAA 119 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la---~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~-~~~~l~~~~~~~~l~~~l~~~~~~ 119 (430)
..+++.+..-. .-++ +.|...++++|++|+|....+.-..++++|- ..|+ .++.+... .+ -..++++.+++
T Consensus 144 ~~l~~~~aa~~-~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~--~~-~~~~a~~lGa~ 218 (356)
T 1pl8_A 144 DNVTFEEGALI-EPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAK-AMGAAQVVVTDLS--AT-RLSKAKEIGAD 218 (356)
T ss_dssp TTSCHHHHHHH-HHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEESC--HH-HHHHHHHTTCS
T ss_pred CCCCHHHHHhh-chHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECCC--HH-HHHHHHHhCCC
Confidence 45777775432 2222 2334458999999999987556777777765 4587 55555432 33 33456778888
Q ss_pred EEEecc
Q 048242 120 LVFVDQ 125 (430)
Q Consensus 120 ~vi~~~ 125 (430)
.++...
T Consensus 219 ~vi~~~ 224 (356)
T 1pl8_A 219 LVLQIS 224 (356)
T ss_dssp EEEECS
T ss_pred EEEcCc
Confidence 776543
No 115
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}
Probab=30.11 E-value=1.5e+02 Score=26.42 Aligned_cols=57 Identities=4% Similarity=-0.146 Sum_probs=41.5
Q ss_pred EEEEcCCchhHHHHHHHhhhcCCeeeeccccC-ChhhHHHHHhhcCceEEEeccccHH
Q 048242 73 VSVLSPNVPAMYEVHFGVPMTGAVLNCINFRL-NPLNVAIILGHAEAALVFVDQQYFA 129 (430)
Q Consensus 73 V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~-~~~~l~~~l~~~~~~~vi~~~~~~~ 129 (430)
..+....+..-..+.+++.+.|.-++.+-|.. .+..-...++..++++++++.++.+
T Consensus 81 ~vv~~SsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~~~~~ 138 (352)
T 2zsj_A 81 AVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQGTFDD 138 (352)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHHHTTCEEEEESSCHHH
T ss_pred EEEEeCCchHHHHHHHHHHhcCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECCCHHH
Confidence 34445566666767788899998877766654 5556667899999999999875433
No 116
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=29.80 E-value=1.9e+02 Score=25.43 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=9.4
Q ss_pred HHHHHHHHhcCcEEEe
Q 048242 324 PPILLAMSQKGFRVTH 339 (430)
Q Consensus 324 ~~~~~~~~~~~~~v~~ 339 (430)
.++.+.+.+.|+.+..
T Consensus 305 ~~~~~~l~~~gi~v~~ 320 (384)
T 1eg5_A 305 STLQNLLSGYGIYVST 320 (384)
T ss_dssp HHHHHHHHHTTEECBC
T ss_pred HHHHHHHhhCCeEEec
Confidence 4566666666666544
No 117
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=29.17 E-value=2e+02 Score=25.67 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=41.9
Q ss_pred HHHHcCCC-CCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEecc
Q 048242 61 ALSQLSIG-PGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQ 125 (430)
Q Consensus 61 ~L~~~gv~-~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~ 125 (430)
.|.+.+++ +|++|+|.....+-..++++|- ..|+.++.+.. +.+.+....++.+++.++...
T Consensus 178 al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~-~~Ga~Vi~~~~--~~~~~~~~~~~lGa~~v~~~~ 240 (366)
T 1yqd_A 178 PLKYFGLDEPGKHIGIVGLGGLGHVAVKFAK-AFGSKVTVIST--SPSKKEEALKNFGADSFLVSR 240 (366)
T ss_dssp HHHHTTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEES--CGGGHHHHHHTSCCSEEEETT
T ss_pred HHHhcCcCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHHHHHHhcCCceEEecc
Confidence 44556888 9999999987566666666665 46876555543 345555555578888776544
No 118
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Probab=29.03 E-value=1.7e+02 Score=26.27 Aligned_cols=57 Identities=5% Similarity=-0.086 Sum_probs=41.7
Q ss_pred EEEEcCCchhHHHHHHHhhhcCCeeeeccccC-ChhhHHHHHhhcCceEEEeccccHH
Q 048242 73 VSVLSPNVPAMYEVHFGVPMTGAVLNCINFRL-NPLNVAIILGHAEAALVFVDQQYFA 129 (430)
Q Consensus 73 V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~-~~~~l~~~l~~~~~~~vi~~~~~~~ 129 (430)
..+....+..-..+.++|.+.|.-++.+-|.. .+..-...++..++++++++.++.+
T Consensus 87 ~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~~~~~ 144 (360)
T 2d1f_A 87 AVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNFDD 144 (360)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCEEEEEECSSCCCHHHHHHHHHTTCEEEEBSSCHHH
T ss_pred EEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHcCCEEEEECCCHHH
Confidence 34444566666767788899999887777765 5566677899999999999876433
No 119
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=28.06 E-value=2.2e+02 Score=25.02 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=41.0
Q ss_pred HHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe-eeeccccCChhhHHHHHhhcCceEEEeccc
Q 048242 60 SALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV-LNCINFRLNPLNVAIILGHAEAALVFVDQQ 126 (430)
Q Consensus 60 ~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~-~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 126 (430)
+.+...++++|++|++...-+.-.+++++|.. .|+. ++.++.. ++-..++++.+++.++...+
T Consensus 151 ~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~-~G~~~vi~~~~~---~~k~~~a~~lGa~~~i~~~~ 214 (346)
T 4a2c_A 151 HAFHLAQGCENKNVIIIGAGTIGLLAIQCAVA-LGAKSVTAIDIS---SEKLALAKSFGAMQTFNSSE 214 (346)
T ss_dssp HHHHHTTCCTTSEEEEECCSHHHHHHHHHHHH-TTCSEEEEEESC---HHHHHHHHHTTCSEEEETTT
T ss_pred HHHHHhccCCCCEEEEECCCCcchHHHHHHHH-cCCcEEEEEech---HHHHHHHHHcCCeEEEeCCC
Confidence 34456689999999999876666666665554 5554 3444322 33355678889988886553
No 120
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=27.74 E-value=1e+02 Score=26.53 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCCCCCCeEEEEcC
Q 048242 56 RRLASALSQLSIGPGTAVSVLSP 78 (430)
Q Consensus 56 ~~la~~L~~~gv~~g~~V~i~~~ 78 (430)
+.|.+.|.++||++||.|.+...
T Consensus 16 ~~L~~~L~~LGI~~Gd~llVHsS 38 (273)
T 2nyg_A 16 QSITEDLKALGLKKGMTVLVHSS 38 (273)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEEC
T ss_pred HHHHHHHHHcCCCCCCEEEEEec
Confidence 35777888999999999998864
No 121
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=26.92 E-value=1.5e+02 Score=26.42 Aligned_cols=80 Identities=15% Similarity=0.044 Sum_probs=49.4
Q ss_pred eeeHHHHHHHH--HHHH-HHHHHc-CCCCC-CeEEEEcC-CchhHHHHHHHhhhcCCeeeeccccCCh-hhHHHHHhhcC
Q 048242 45 HYTWQQTYQRC--RRLA-SALSQL-SIGPG-TAVSVLSP-NVPAMYEVHFGVPMTGAVLNCINFRLNP-LNVAIILGHAE 117 (430)
Q Consensus 45 ~~Ty~el~~~~--~~la-~~L~~~-gv~~g-~~V~i~~~-n~~~~~~~~lA~~~~G~~~~~l~~~~~~-~~l~~~l~~~~ 117 (430)
.+++.+..... -..| +.|.+. ++++| ++|+|... ...-.+++++|- ..|+.++.+...... .+....+++.+
T Consensus 138 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lG 216 (364)
T 1gu7_A 138 GLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGK-LLNFNSISVIRDRPNLDEVVASLKELG 216 (364)
T ss_dssp CCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHH-HHTCEEEEEECCCTTHHHHHHHHHHHT
T ss_pred CCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHH-HCCCEEEEEecCccccHHHHHHHHhcC
Confidence 57887755432 1222 234443 89999 99999987 556667777766 468866555432222 23345567888
Q ss_pred ceEEEecc
Q 048242 118 AALVFVDQ 125 (430)
Q Consensus 118 ~~~vi~~~ 125 (430)
++.++...
T Consensus 217 a~~vi~~~ 224 (364)
T 1gu7_A 217 ATQVITED 224 (364)
T ss_dssp CSEEEEHH
T ss_pred CeEEEecC
Confidence 88887643
No 122
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=26.86 E-value=1.5e+02 Score=26.88 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=37.5
Q ss_pred CCCCCCeEEEEcCCchh------HHHHHHHhh-hcCCeeeeccc------------cCChhhHHHHHhhcCceEEEecc
Q 048242 66 SIGPGTAVSVLSPNVPA------MYEVHFGVP-MTGAVLNCINF------------RLNPLNVAIILGHAEAALVFVDQ 125 (430)
Q Consensus 66 gv~~g~~V~i~~~n~~~------~~~~~lA~~-~~G~~~~~l~~------------~~~~~~l~~~l~~~~~~~vi~~~ 125 (430)
-+++||+|+|+.|.+.- .+-.-...+ ..|..++.-+. ....+++...+..-.++.|+|..
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 68899999999998742 222223333 35766553321 11235677777778888898853
No 123
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=26.84 E-value=1.8e+02 Score=26.25 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=36.5
Q ss_pred HHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC-eeeeccccCChhhHHHHHhhcCceEE
Q 048242 62 LSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA-VLNCINFRLNPLNVAIILGHAEAALV 121 (430)
Q Consensus 62 L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~-~~~~l~~~~~~~~l~~~l~~~~~~~v 121 (430)
|...++++|++|+|...-+.-.+++++|-. .|+ .++.++. +.+. ..++++.+++++
T Consensus 178 l~~~~~~~g~~VlV~GaG~vG~~aiqlAk~-~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~i 234 (398)
T 1kol_A 178 AVTAGVGPGSTVYVAGAGPVGLAAAASARL-LGAAVVIVGDL--NPAR-LAHAKAQGFEIA 234 (398)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEEES--CHHH-HHHHHHTTCEEE
T ss_pred HHHcCCCCCCEEEEECCcHHHHHHHHHHHH-CCCCeEEEEcC--CHHH-HHHHHHcCCcEE
Confidence 345689999999999865556666776654 587 4554433 2333 445677888743
No 124
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=26.74 E-value=2.2e+02 Score=26.16 Aligned_cols=58 Identities=10% Similarity=-0.056 Sum_probs=32.2
Q ss_pred EEEcCCchhHHH-HHHHhhhcCCeeeeccccCChh--hHHHHHhhcCceEEEeccccHHHH
Q 048242 74 SVLSPNVPAMYE-VHFGVPMTGAVLNCINFRLNPL--NVAIILGHAEAALVFVDQQYFALA 131 (430)
Q Consensus 74 ~i~~~n~~~~~~-~~lA~~~~G~~~~~l~~~~~~~--~l~~~l~~~~~~~vi~~~~~~~~~ 131 (430)
+++..++.+.+. ++.++.+.|-.++.-++.+... .+...++..+.++++++.+..+.+
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l 160 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAV 160 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHH
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHH
Confidence 455566665544 3445566665555555555432 222356777888888776544333
No 125
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=26.67 E-value=1.9e+02 Score=26.75 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=47.7
Q ss_pred eeeeHHHHHHHHHHHHH---HHHH---cCCCCCCeEEEEcCC-chhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhc
Q 048242 44 KHYTWQQTYQRCRRLAS---ALSQ---LSIGPGTAVSVLSPN-VPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHA 116 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~---~L~~---~gv~~g~~V~i~~~n-~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~ 116 (430)
..+++.+.......... .|.+ .++++|++|+|.... .+-.+++++|. ..|+.++.+.. +++. ...+++.
T Consensus 197 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak-~~Ga~vi~~~~--~~~~-~~~~~~l 272 (456)
T 3krt_A 197 DHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFAL-AGGANPICVVS--SPQK-AEICRAM 272 (456)
T ss_dssp TTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEES--SHHH-HHHHHHH
T ss_pred CCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHH-HcCCeEEEEEC--CHHH-HHHHHhh
Confidence 45788776533222222 2322 478999999999874 45555555554 56887666652 3444 3456778
Q ss_pred CceEEEec
Q 048242 117 EAALVFVD 124 (430)
Q Consensus 117 ~~~~vi~~ 124 (430)
+++.++..
T Consensus 273 Ga~~vi~~ 280 (456)
T 3krt_A 273 GAEAIIDR 280 (456)
T ss_dssp TCCEEEET
T ss_pred CCcEEEec
Confidence 88887754
No 126
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=26.64 E-value=1.1e+02 Score=23.19 Aligned_cols=9 Identities=11% Similarity=-0.001 Sum_probs=6.3
Q ss_pred CCcceEEEC
Q 048242 34 PTRKSVVYE 42 (430)
Q Consensus 34 p~~~a~~~~ 42 (430)
|.++|++..
T Consensus 13 p~~IavIGa 21 (145)
T 2duw_A 13 TRTIALVGA 21 (145)
T ss_dssp CCCEEEESC
T ss_pred CCEEEEECc
Confidence 677777764
No 127
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=26.60 E-value=1.8e+02 Score=25.83 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=46.3
Q ss_pred eeeeHHHHHHHHHHHH---HHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceE
Q 048242 44 KHYTWQQTYQRCRRLA---SALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAAL 120 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la---~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ 120 (430)
..+++.+.... .-++ +.|...++++|++|+|....+.-..++++|- ..|+.++.+.. +++. ...+++.+++.
T Consensus 141 ~~~~~~~aa~~-~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~-~~~~~~lGa~~ 215 (352)
T 1e3j_A 141 DNVSLEEGALL-EPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAK-AYGAFVVCTAR--SPRR-LEVAKNCGADV 215 (352)
T ss_dssp TTSCHHHHHTH-HHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEES--CHHH-HHHHHHTTCSE
T ss_pred CCCCHHHHHhh-chHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEcC--CHHH-HHHHHHhCCCE
Confidence 45777765432 2222 2344458999999999987556667777665 45876444432 3333 34556778877
Q ss_pred EEec
Q 048242 121 VFVD 124 (430)
Q Consensus 121 vi~~ 124 (430)
++..
T Consensus 216 ~~~~ 219 (352)
T 1e3j_A 216 TLVV 219 (352)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 6653
No 128
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=26.51 E-value=1.7e+02 Score=25.32 Aligned_cols=74 Identities=8% Similarity=0.117 Sum_probs=48.6
Q ss_pred eeeeHHHHHHHHHHHH---HHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceE
Q 048242 44 KHYTWQQTYQRCRRLA---SALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAAL 120 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la---~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ 120 (430)
..+++.+.......++ +.|...++++|++|+|+...+.-.+++++|- ..|+.++.+. +++.+ ..+++.+++.
T Consensus 114 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak-~~Ga~Vi~~~---~~~~~-~~~~~lGa~~ 188 (315)
T 3goh_A 114 DNLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLN-NAGYVVDLVS---ASLSQ-ALAAKRGVRH 188 (315)
T ss_dssp TTSCHHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHH-HHTCEEEEEC---SSCCH-HHHHHHTEEE
T ss_pred CCCCHHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEE---ChhhH-HHHHHcCCCE
Confidence 4678888754333333 2333448999999999988556666666665 4688776665 33333 3457788888
Q ss_pred EE
Q 048242 121 VF 122 (430)
Q Consensus 121 vi 122 (430)
++
T Consensus 189 v~ 190 (315)
T 3goh_A 189 LY 190 (315)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 129
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=26.48 E-value=2.5e+02 Score=25.15 Aligned_cols=56 Identities=9% Similarity=0.003 Sum_probs=29.7
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeecccc----CChhhHHHHHhhc--CceEEEec
Q 048242 66 SIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFR----LNPLNVAIILGHA--EAALVFVD 124 (430)
Q Consensus 66 gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~----~~~~~l~~~l~~~--~~~~vi~~ 124 (430)
++++||.|.+..+....+.. ++...|+.++.++.. ...+.+...++.. ++++|+..
T Consensus 68 ~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~ 129 (394)
T 1o69_A 68 GVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILT 129 (394)
T ss_dssp TCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEE
T ss_pred CCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEE
Confidence 45677776666555444332 223356665555432 3456666666543 45555543
No 130
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=26.19 E-value=2.6e+02 Score=26.56 Aligned_cols=62 Identities=8% Similarity=0.008 Sum_probs=47.8
Q ss_pred HHcC-CCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEecc
Q 048242 63 SQLS-IGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQ 125 (430)
Q Consensus 63 ~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~ 125 (430)
.+.| +++|+.|+ ....+..-..+.++|.+.|.-++.+-|...+..-...++..+++++++..
T Consensus 105 ~~~g~~~~g~~vv-~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 105 EEQGLLKPGYTII-EPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp HHHTCCCTTCEEE-EECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHcCCCCCCCEEE-EeCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 3445 57777664 45667777888889999999888777776667778889999999999875
No 131
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=26.09 E-value=3.5e+02 Score=24.01 Aligned_cols=55 Identities=5% Similarity=0.123 Sum_probs=32.4
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeecccc-----CChhhHHHHHhhcCceEEEec
Q 048242 66 SIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFR-----LNPLNVAIILGHAEAALVFVD 124 (430)
Q Consensus 66 gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~-----~~~~~l~~~l~~~~~~~vi~~ 124 (430)
++++||.|.+..+..... ..++...|+.++.++.+ ...+.+...++. ++++|++.
T Consensus 76 ~~~~g~~Vi~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 135 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTT---YYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILTV 135 (390)
T ss_dssp SCCTTCEEEEESSSCHHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEEE
Confidence 577888877765544333 33455677766555432 245667766654 56666653
No 132
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=26.09 E-value=1.4e+02 Score=25.69 Aligned_cols=84 Identities=5% Similarity=0.021 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHc--CCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccc--cCChh---hHHHHHhhcCceE
Q 048242 48 WQQTYQRCRRLASALSQL--SIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINF--RLNPL---NVAIILGHAEAAL 120 (430)
Q Consensus 48 y~el~~~~~~la~~L~~~--gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~--~~~~~---~l~~~l~~~~~~~ 120 (430)
++.+..+..++-..+.+. .+..+.++.+.......++.--+++-..|.. -+++ .-++. ++...+++.++++
T Consensus 138 ~~~~~~~L~~ld~~~~~~l~~~~~~~~~~vt~H~af~Y~~~~yGl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~ 215 (282)
T 3mfq_A 138 TEKYQAQLDDLHAWVEKELSVIPKESRYLVTPHDAFNYFAASYDFTLYAPQ--GVSTDSEVANSDMIETVNLIIDHNIKA 215 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGCEEECSSSCCHHHHHHTTCEEECSS--CSSSCSCCCHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccCcEEEEECchHHHHHHHCCCeEeccc--ccCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 344444555555555432 4444557777777778888888887776632 2333 22444 4555667889999
Q ss_pred EEeccccHHHHHH
Q 048242 121 VFVDQQYFALAEE 133 (430)
Q Consensus 121 vi~~~~~~~~~~~ 133 (430)
||++........+
T Consensus 216 if~e~~~~~~~~~ 228 (282)
T 3mfq_A 216 IFTESTTNPERMK 228 (282)
T ss_dssp EECBTTSCTHHHH
T ss_pred EEEeCCCChHHHH
Confidence 9998766554333
No 133
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=26.08 E-value=2e+02 Score=25.63 Aligned_cols=58 Identities=10% Similarity=-0.003 Sum_probs=38.7
Q ss_pred HcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC-eeeeccccCChhhHHHHHhhcCceEEEecc
Q 048242 64 QLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA-VLNCINFRLNPLNVAIILGHAEAALVFVDQ 125 (430)
Q Consensus 64 ~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~-~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~ 125 (430)
..++++|++|+|+..-+.-.+++++|- ..|+ .++.+... ++. ..++++.+++.++...
T Consensus 186 ~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~--~~~-~~~a~~lGa~~vi~~~ 244 (373)
T 1p0f_A 186 TAKVTPGSTCAVFGLGGVGFSAIVGCK-AAGASRIIGVGTH--KDK-FPKAIELGATECLNPK 244 (373)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECSC--GGG-HHHHHHTTCSEEECGG
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEECCC--HHH-HHHHHHcCCcEEEecc
Confidence 348999999999986556667777765 4587 45555432 333 3345678888877544
No 134
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=26.02 E-value=2.1e+02 Score=25.00 Aligned_cols=59 Identities=7% Similarity=-0.062 Sum_probs=39.7
Q ss_pred HHcCCCCCCeEEEEcCC-chhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEec
Q 048242 63 SQLSIGPGTAVSVLSPN-VPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVD 124 (430)
Q Consensus 63 ~~~gv~~g~~V~i~~~n-~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~ 124 (430)
...++++|++|+|.... ++-..++.+|. ..|+.++.+.. +++.+....++.+++.++..
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~-~~Ga~Vi~~~~--~~~~~~~~~~~~g~~~~~~~ 202 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIAR-LKGCRVVGIAG--GAEKCRFLVEELGFDGAIDY 202 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEES--SHHHHHHHHHTTCCSEEEET
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHHHHHHHcCCCEEEEC
Confidence 34489999999999884 45555555554 67887665543 34555555478888877654
No 135
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=26.00 E-value=3.4e+02 Score=24.02 Aligned_cols=76 Identities=16% Similarity=-0.015 Sum_probs=48.4
Q ss_pred eeeeHHHHHHHHHHH--H-HHH-HHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCce
Q 048242 44 KHYTWQQTYQRCRRL--A-SAL-SQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAA 119 (430)
Q Consensus 44 ~~~Ty~el~~~~~~l--a-~~L-~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~ 119 (430)
..+++.+........ | +.| ...++++|++|+|....+.-..++++|- ..|+.++.+.. +.+.+ ..+++.+++
T Consensus 160 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~-~~~~~lGa~ 235 (363)
T 3uog_A 160 KSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAK-ATGAEVIVTSS--SREKL-DRAFALGAD 235 (363)
T ss_dssp TTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHH-HTTCEEEEEES--CHHHH-HHHHHHTCS
T ss_pred CCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEec--CchhH-HHHHHcCCC
Confidence 567888776433222 2 233 2458999999999985445666666655 56887666543 33333 346778888
Q ss_pred EEEe
Q 048242 120 LVFV 123 (430)
Q Consensus 120 ~vi~ 123 (430)
.++.
T Consensus 236 ~vi~ 239 (363)
T 3uog_A 236 HGIN 239 (363)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 8876
No 136
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=25.71 E-value=2.1e+02 Score=25.20 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=46.0
Q ss_pred eeeeHHHHHHHHHH---HHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceE
Q 048242 44 KHYTWQQTYQRCRR---LASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAAL 120 (430)
Q Consensus 44 ~~~Ty~el~~~~~~---la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ 120 (430)
..+++.+....... .-+.|.+.++++|++|+|....++-..++++|. ..|+.++.+.. +++.+. .+++.+++.
T Consensus 136 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~~~~~a~-~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~ 211 (339)
T 1rjw_A 136 DNLSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAK-AMGLNVVAVDI--GDEKLE-LAKELGADL 211 (339)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHHHTCCTTCEEEEECCSTTHHHHHHHHH-HTTCEEEEECS--CHHHHH-HHHHTTCSE
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEeC--CHHHHH-HHHHCCCCE
Confidence 35677664322211 123344558999999999988666667777665 45876665543 333333 455677776
Q ss_pred EEe
Q 048242 121 VFV 123 (430)
Q Consensus 121 vi~ 123 (430)
++.
T Consensus 212 ~~d 214 (339)
T 1rjw_A 212 VVN 214 (339)
T ss_dssp EEC
T ss_pred Eec
Confidence 654
No 137
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=25.71 E-value=1.1e+02 Score=22.71 Aligned_cols=80 Identities=6% Similarity=-0.075 Sum_probs=48.2
Q ss_pred CCCCCCHHHHHHHHHhhCCCcceEEECC-------------eeeeHHHHHHHH----HHHHHHHHHcCCCCCCeEEEEcC
Q 048242 16 NFTALTPLWFLERAATVHPTRKSVVYES-------------KHYTWQQTYQRC----RRLASALSQLSIGPGTAVSVLSP 78 (430)
Q Consensus 16 ~~~~~t~~~~l~~~~~~~p~~~a~~~~~-------------~~~Ty~el~~~~----~~la~~L~~~gv~~g~~V~i~~~ 78 (430)
.....+..++.... +.......+++-. ..+.+.++.+.. ..+...+...++.++..|.++|.
T Consensus 21 ~~~~is~~el~~~l-~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ivvyC~ 99 (139)
T 3d1p_A 21 NIQSYSFEDMKRIV-GKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFEKQIGIPKPDSAKELIFYCA 99 (139)
T ss_dssp CCEECCHHHHHHHH-HHTCTTEEEEECSCHHHHHHCCCTTCEECCTTTCTTGGGSCHHHHHHHHSSCCCCTTSEEEEECS
T ss_pred CcceecHHHHHHHH-hCCCCCeEEEECcCHHHHhCCCCCCcEEcCHHHhhhhccCCHHHHHHHHhccCCCCCCeEEEECC
Confidence 34455666665433 3222345666632 456666654332 24444454457778889999999
Q ss_pred CchhHHHHHHHhhhcCCe
Q 048242 79 NVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 79 n~~~~~~~~lA~~~~G~~ 96 (430)
.+.....+...+...|..
T Consensus 100 ~G~rs~~aa~~L~~~G~~ 117 (139)
T 3d1p_A 100 SGKRGGEAQKVASSHGYS 117 (139)
T ss_dssp SSHHHHHHHHHHHTTTCC
T ss_pred CCchHHHHHHHHHHcCCC
Confidence 988777777777777763
No 138
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=25.66 E-value=1.3e+02 Score=22.51 Aligned_cols=48 Identities=10% Similarity=0.004 Sum_probs=24.5
Q ss_pred CeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCce
Q 048242 71 TAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAA 119 (430)
Q Consensus 71 ~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~ 119 (430)
|.|.++.| .....-++..|...|.-.+.+.+....+++....++.+.+
T Consensus 71 Dlvii~vp-~~~v~~v~~~~~~~g~~~i~~~~~~~~~~l~~~a~~~Gi~ 118 (138)
T 1y81_A 71 DVIVFVVP-PKVGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVE 118 (138)
T ss_dssp CEEEECSC-HHHHHHHHHHHHHTTCCEEEECTTSCCHHHHHHHHHHTCE
T ss_pred CEEEEEeC-HHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHCCCE
Confidence 55555555 3333333444555555445454444455556666655555
No 139
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=25.32 E-value=1.8e+02 Score=25.83 Aligned_cols=60 Identities=12% Similarity=0.190 Sum_probs=36.5
Q ss_pred CCCCCCeEEEEcCCchh------HHHHHHHhh-hcCCeeeeccc------------cCChhhHHHHHhhcCceEEEecc
Q 048242 66 SIGPGTAVSVLSPNVPA------MYEVHFGVP-MTGAVLNCINF------------RLNPLNVAIILGHAEAALVFVDQ 125 (430)
Q Consensus 66 gv~~g~~V~i~~~n~~~------~~~~~lA~~-~~G~~~~~l~~------------~~~~~~l~~~l~~~~~~~vi~~~ 125 (430)
-+++||+|+|+.|.+.- .+-.-...+ ..|..++.-.. ....+++...+..-.++.|+|..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999998842 222223333 34666553211 11235677777778888888853
No 140
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=24.91 E-value=2.5e+02 Score=24.16 Aligned_cols=84 Identities=12% Similarity=0.144 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHc--CCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccc--cCChh---hHHHHHhhcCceE
Q 048242 48 WQQTYQRCRRLASALSQL--SIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINF--RLNPL---NVAIILGHAEAAL 120 (430)
Q Consensus 48 y~el~~~~~~la~~L~~~--gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~--~~~~~---~l~~~l~~~~~~~ 120 (430)
++.+..+..++-..+.+. .+ ++. ..+...+...++.--+++-..|.. -++| .-++. ++...+++.++++
T Consensus 156 ~~~~~~~L~~Ld~~~~~~l~~~-~~~-~~v~~H~af~Yf~~~yGl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~ 231 (286)
T 3gi1_A 156 AKAFKKEAEQLTEEYTQKFKKV-RSK-TFVTQHTAFSYLAKRFGLKQLGIS--GISPEQEPSPRQLKEIQDFVKEYNVKT 231 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-SCC-EEEEEESCCHHHHHHTTCEEEEEE--CSCC---CCHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCC-EEEEECCchHHHHHHCCCeEeecc--ccCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 344444444444444432 33 343 445556678888888877766522 2333 23343 4566678889999
Q ss_pred EEeccccHHHHHHHH
Q 048242 121 VFVDQQYFALAEEAL 135 (430)
Q Consensus 121 vi~~~~~~~~~~~~~ 135 (430)
||++........+.+
T Consensus 232 if~e~~~~~~~~~~l 246 (286)
T 3gi1_A 232 IFAEDNVNPKIAHAI 246 (286)
T ss_dssp EEECTTSCTHHHHHH
T ss_pred EEEeCCCChHHHHHH
Confidence 999987655444433
No 141
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=24.87 E-value=1.8e+02 Score=25.21 Aligned_cols=83 Identities=16% Similarity=0.124 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHc--CCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeecccc--CChh---hHHHHHhhcCceE
Q 048242 48 WQQTYQRCRRLASALSQL--SIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFR--LNPL---NVAIILGHAEAAL 120 (430)
Q Consensus 48 y~el~~~~~~la~~L~~~--gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~--~~~~---~l~~~l~~~~~~~ 120 (430)
++++..+..++-..+.+. .++.+.+..+...+...++.--+++-..+. .-+++. -++. ++...+++.++++
T Consensus 158 ~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yf~~~yGl~~~~~--~~~~~~~eps~~~l~~l~~~ik~~~v~~ 235 (294)
T 3hh8_A 158 LKAYVAKLEKLDKEAKSKFDAIAENKKLIVTSEGCFKYFSKAYGVPSAYI--WEINTEEEGTPDQISSLIEKLKVIKPSA 235 (294)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSCGGGCCEEEEESCCHHHHHHHTCCEEEE--ESSCCSCCCCHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccCcEEEEECChHHHHHHHcCCceeec--cccCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 344445555555555543 333333555556668888888888875542 223332 2343 4666677889999
Q ss_pred EEeccccHHHHH
Q 048242 121 VFVDQQYFALAE 132 (430)
Q Consensus 121 vi~~~~~~~~~~ 132 (430)
||++........
T Consensus 236 if~e~~~~~~~~ 247 (294)
T 3hh8_A 236 LFVESSVDRRPM 247 (294)
T ss_dssp EEEETTSCSHHH
T ss_pred EEEeCCCCcHHH
Confidence 999876554433
No 142
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=24.71 E-value=2.1e+02 Score=23.16 Aligned_cols=54 Identities=7% Similarity=0.018 Sum_probs=40.3
Q ss_pred eEEEEcCC----chhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEecc
Q 048242 72 AVSVLSPN----VPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQ 125 (430)
Q Consensus 72 ~V~i~~~n----~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~ 125 (430)
+|.+.+.. .+-..++...+-..|.-++.+....+.+++...+++.++++|..+.
T Consensus 90 ~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~ 147 (210)
T 1y80_A 90 KIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSA 147 (210)
T ss_dssp EEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEEC
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 55555433 2344444445557799999999999999999999999999999765
No 143
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=24.53 E-value=3.1e+02 Score=24.07 Aligned_cols=54 Identities=17% Similarity=0.256 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeecccc------CChhhHHHHHhhcCceEEEec
Q 048242 67 IGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFR------LNPLNVAIILGHAEAALVFVD 124 (430)
Q Consensus 67 v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~------~~~~~l~~~l~~~~~~~vi~~ 124 (430)
+++||.|++..+.-..+. -++...|+.+++++.. ...+.+...++. ++++|++.
T Consensus 102 ~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 161 (375)
T 3op7_A 102 IEPGDHVISLYPTYQQLY---DIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRP-TTKMICIN 161 (375)
T ss_dssp CCTTCEEEEEESSCTHHH---HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT-TCCEEEEE
T ss_pred cCCCCEEEEeCCCchhHH---HHHHHcCCEEEEEeccccCCCCCCHHHHHHhhcc-CCeEEEEc
Confidence 568888877766554433 2345567766555432 356677777653 66666654
No 144
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=24.41 E-value=1.4e+02 Score=25.71 Aligned_cols=56 Identities=11% Similarity=0.103 Sum_probs=40.9
Q ss_pred HHHHHHHhhCCCcceEEECC------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhH
Q 048242 24 WFLERAATVHPTRKSVVYES------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAM 83 (430)
Q Consensus 24 ~~l~~~~~~~p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~ 83 (430)
..+....+.-|....+...| ..-++.++.+++.+.+..|.+.|++ ..++.-|+...
T Consensus 38 tv~~~i~~~lP~e~~iy~~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d----~IVIACNTa~~ 99 (274)
T 3uhf_A 38 SVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQID----MLIIACNTASA 99 (274)
T ss_dssp HHHHHHHHTTCCSEEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCS----EEEECCHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCCChhH
Confidence 45666667788877776654 4789999999999999999887763 44555555443
No 145
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=24.15 E-value=1.8e+02 Score=25.60 Aligned_cols=54 Identities=13% Similarity=-0.008 Sum_probs=36.7
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHhhhc-CCeeeeccccCChhhHHHHHhhcCceEEEe
Q 048242 66 SIGPGTAVSVLSPNVPAMYEVHFGVPMT-GAVLNCINFRLNPLNVAIILGHAEAALVFV 123 (430)
Q Consensus 66 gv~~g~~V~i~~~n~~~~~~~~lA~~~~-G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~ 123 (430)
++ +|++|+|+...+.-.+++++|-... |+.++.+.. +++. ...+++.+++.++.
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~--~~~~-~~~~~~lGa~~vi~ 222 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISR--SKKH-RDFALELGADYVSE 222 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECS--CHHH-HHHHHHHTCSEEEC
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeC--CHHH-HHHHHHhCCCEEec
Confidence 78 9999999988666777777776543 776555543 3333 34456678877764
No 146
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=24.13 E-value=2.4e+02 Score=23.78 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCCCEEEeccCc-hhhhhhHHHHHHHhhcceEEEe--CCCCHHHHHHHHHhhCceEEeecc------HHHHHHHcCCCCC
Q 048242 234 KEGAVYLWTLPI-FHGNGWCFTWSLAALCGTSVML--RQASAKAIYKAIAEHGVTNFCAAP------IVLNSIVNAPPED 304 (430)
Q Consensus 234 ~~~~~~~~~~pl-~h~~gl~~~~~~l~~g~~~v~~--~~~~~~~~~~~l~~~~vt~~~~~p------~~l~~l~~~~~~~ 304 (430)
....+++.+.+- .|..|...+-..+...|.-++. ....++.+.+.+.++++..+..+- ..+..+++..+..
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~ 201 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLEN 201 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHhc
Q ss_pred CCCCCCceeEEeecCCCCCHHHHH
Q 048242 305 TILPLPHVVNVNTGGSPPPPPILL 328 (430)
Q Consensus 305 ~~~~l~~lr~v~~~G~~l~~~~~~ 328 (430)
... .+ +++||..++++..+
T Consensus 202 ~~~-~~----v~vGG~~~~~~~~~ 220 (258)
T 2i2x_B 202 GIK-IP----FACGGGAVNQDFVS 220 (258)
T ss_dssp TCC-CC----EEEESTTCCHHHHH
T ss_pred CCC-Cc----EEEECccCCHHHHH
No 147
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=24.01 E-value=1.4e+02 Score=26.24 Aligned_cols=81 Identities=10% Similarity=0.032 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHc--CCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccC--Chh---hHHHHHhhcCceE
Q 048242 48 WQQTYQRCRRLASALSQL--SIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRL--NPL---NVAIILGHAEAAL 120 (430)
Q Consensus 48 y~el~~~~~~la~~L~~~--gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~--~~~---~l~~~l~~~~~~~ 120 (430)
++.+..+..++-..+.+. .+....+..+...+...++.--+++-..+. ..+++.. ++. ++...+++.++++
T Consensus 165 a~~~~~~L~~Ld~~~~~~l~~~p~~~~~~v~~H~af~Yfa~~yGl~~~~~--~~i~~~~ePs~~~l~~l~~~ik~~~v~~ 242 (307)
T 3ujp_A 165 AAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLARDYGMEEIYM--WPINAEQQFTPKQVQTVIEEVKTNNVPT 242 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCGGGCEEEEEESTTHHHHHHTTCEEEEE--ESSCCSSCCCHHHHHHHHHHHHTTTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCEEEEECchHHHHHHHCCCcEEEe--eccCCCCCCCHHHHHHHHHHHHhcCCcE
Confidence 344444555555555442 343344556666667888888777775532 2344432 333 5666678889999
Q ss_pred EEeccccHHH
Q 048242 121 VFVDQQYFAL 130 (430)
Q Consensus 121 vi~~~~~~~~ 130 (430)
||++.....+
T Consensus 243 If~e~~~~~k 252 (307)
T 3ujp_A 243 IFCESTVSDK 252 (307)
T ss_dssp EEEETTSCSH
T ss_pred EEEeCCCChH
Confidence 9998765543
No 148
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=24.00 E-value=3.6e+02 Score=23.50 Aligned_cols=57 Identities=5% Similarity=-0.115 Sum_probs=44.3
Q ss_pred CeEEEE-cCCchhHHHHHHHhhhcCCeeeeccccCC-hhhHHHHHhhcCceEEEecccc
Q 048242 71 TAVSVL-SPNVPAMYEVHFGVPMTGAVLNCINFRLN-PLNVAIILGHAEAALVFVDQQY 127 (430)
Q Consensus 71 ~~V~i~-~~n~~~~~~~~lA~~~~G~~~~~l~~~~~-~~~l~~~l~~~~~~~vi~~~~~ 127 (430)
+.|+.. ...+.....+.++|.+.|.-+..+-|... +..-...++..++++++++...
T Consensus 71 ~~vv~~G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~v~~~~~~~ 129 (325)
T 1j0a_A 71 DVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKD 129 (325)
T ss_dssp SEEEEECCTTCHHHHHHHHHHHHTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESCCS
T ss_pred CEEEEcCCcchHHHHHHHHHHHHhCCcEEEEECCCCCCCchHHHHHHCCCEEEEeCcch
Confidence 355544 36777888889999999988777666655 6677788999999999998765
No 149
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=23.89 E-value=1.9e+02 Score=25.68 Aligned_cols=60 Identities=8% Similarity=0.104 Sum_probs=35.2
Q ss_pred CCCCCCeEEEEcCCchh------HHHHHHHhhh-cCCeeeeccc------------cCChhhHHHHHhhcCceEEEecc
Q 048242 66 SIGPGTAVSVLSPNVPA------MYEVHFGVPM-TGAVLNCINF------------RLNPLNVAIILGHAEAALVFVDQ 125 (430)
Q Consensus 66 gv~~g~~V~i~~~n~~~------~~~~~lA~~~-~G~~~~~l~~------------~~~~~~l~~~l~~~~~~~vi~~~ 125 (430)
-+++||+|+|+.|.+.- .+-.....++ .|..++.-+. ....+++...+..-.++.|+|..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999988752 2222232332 4655553221 11235677777777788888753
No 150
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=23.80 E-value=2.1e+02 Score=25.36 Aligned_cols=18 Identities=11% Similarity=0.333 Sum_probs=11.0
Q ss_pred HHHHHHHHhcCcEEEeee
Q 048242 324 PPILLAMSQKGFRVTHVY 341 (430)
Q Consensus 324 ~~~~~~~~~~~~~v~~~Y 341 (430)
.++.+.+.+.|+.+..+|
T Consensus 313 ~~l~~~l~~~gi~v~~~~ 330 (393)
T 1mdo_A 313 DALMASLKTKGIGTGLHF 330 (393)
T ss_dssp HHHHHHHHHTTBCCBCCC
T ss_pred HHHHHHHHhCCCCccccc
Confidence 456666666677665544
No 151
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=23.63 E-value=3.3e+02 Score=23.24 Aligned_cols=78 Identities=8% Similarity=-0.032 Sum_probs=45.2
Q ss_pred eeeHHH-HHHHHHHHHHHHHHcC-CCCCCeEEEEcCCchhHHHHHHHhhhcC-------------Ceeeecc--ccCChh
Q 048242 45 HYTWQQ-TYQRCRRLASALSQLS-IGPGTAVSVLSPNVPAMYEVHFGVPMTG-------------AVLNCIN--FRLNPL 107 (430)
Q Consensus 45 ~~Ty~e-l~~~~~~la~~L~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G-------------~~~~~l~--~~~~~~ 107 (430)
.+++.+ +...+..+...+.+.| . ..|++-+.-++++.++..-|.+++ .+.+.++ +..+.+
T Consensus 16 ~~~~~~~i~~~~~~L~~~l~~~g~~---~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~av~~~~~~~~~~~ 92 (275)
T 1wxi_A 16 QINAEEEIRRSVDFLKSYLQTYPFI---KSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQADEQ 92 (275)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHSTTC---CEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSSCTTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCC---CCEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEEEEeCCCCccCHH
Confidence 356654 4455666666776666 4 368888899998866553333331 2233333 222345
Q ss_pred hHHHHHhhcCc-eEEEecc
Q 048242 108 NVAIILGHAEA-ALVFVDQ 125 (430)
Q Consensus 108 ~l~~~l~~~~~-~~vi~~~ 125 (430)
+...+.+..++ ...+.+-
T Consensus 93 dA~~va~~lgi~~~~~i~i 111 (275)
T 1wxi_A 93 DCQDAIAFIQPDRVLTVNI 111 (275)
T ss_dssp HHHHHHHHHCCSEEEECCC
T ss_pred HHHHHHHHcCCCeEEEEec
Confidence 66777777887 6666553
No 152
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=23.57 E-value=1.5e+02 Score=25.94 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHc--CCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccc--cCChh---hHHHHHhhcCceEE
Q 048242 49 QQTYQRCRRLASALSQL--SIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINF--RLNPL---NVAIILGHAEAALV 121 (430)
Q Consensus 49 ~el~~~~~~la~~L~~~--gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~--~~~~~---~l~~~l~~~~~~~v 121 (430)
+++..+..++-..+.+. .++...+..+...+...++.--+++-..|. .-+++ .-++. ++...+++.++++|
T Consensus 173 ~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yfa~~yGl~~~~~--~~~~~~~eps~~~l~~l~~~ik~~~v~~I 250 (313)
T 1toa_A 173 QAYQQQLDKLDAYVRRKAQSLPAERRVLVTAHDAFGYFSRAYGFEVKGL--QGVSTASEASAHDMQELAAFIAQRKLPAI 250 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCGGGCEEEEEESCCHHHHHHHTCEEEEE--ECSSCSSCCCHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccCCEEEEECCcHHHHHHHCCCeEEEe--eccCCCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 33444444444444332 344334555666667888888888876553 22333 33444 45556678899999
Q ss_pred EeccccHHHHHHH
Q 048242 122 FVDQQYFALAEEA 134 (430)
Q Consensus 122 i~~~~~~~~~~~~ 134 (430)
|++........+.
T Consensus 251 f~e~~~~~~~~~~ 263 (313)
T 1toa_A 251 FIESSIPHKNVEA 263 (313)
T ss_dssp EEETTSCTHHHHH
T ss_pred EEeCCCChHHHHH
Confidence 9988765544333
No 153
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=23.49 E-value=3.8e+02 Score=23.56 Aligned_cols=51 Identities=8% Similarity=0.083 Sum_probs=27.9
Q ss_pred CCCCeEEEEcCCchhHHHHHHHhhhcCCeeeecccc--------CChhhHHHHHhhcCceEEEe
Q 048242 68 GPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFR--------LNPLNVAIILGHAEAALVFV 123 (430)
Q Consensus 68 ~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~--------~~~~~l~~~l~~~~~~~vi~ 123 (430)
++||.|++..+.-..+ ..++...|+.++.++.. ...+.+...++. +++|++
T Consensus 112 ~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~v~i 170 (391)
T 4dq6_A 112 KANDKIMIQEPVYSPF---NSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD--VKLFIL 170 (391)
T ss_dssp CTTCEEEECSSCCTHH---HHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT--EEEEEE
T ss_pred CCCCEEEEcCCCCHHH---HHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc--CCEEEE
Confidence 4667666554443332 23444566666555433 356677777766 565554
No 154
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}
Probab=23.48 E-value=2.8e+02 Score=24.51 Aligned_cols=78 Identities=10% Similarity=-0.025 Sum_probs=47.9
Q ss_pred eeeeHHHHHHHHHHHHHH---H-HHcCCCCCCeEEEEcCC-chhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCc
Q 048242 44 KHYTWQQTYQRCRRLASA---L-SQLSIGPGTAVSVLSPN-VPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEA 118 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~~---L-~~~gv~~g~~V~i~~~n-~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~ 118 (430)
..+++.+.......++.. | ...++++|++|+|.... ++-..++.+|. ..|+.++.+.. +++.+ ..+++.++
T Consensus 138 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~-~~Ga~Vi~~~~--~~~~~-~~~~~lGa 213 (353)
T 4dup_A 138 KGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLAR-AFGAEVYATAG--STGKC-EACERLGA 213 (353)
T ss_dssp TTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEES--SHHHH-HHHHHHTC
T ss_pred CCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHH-HcCCEEEEEeC--CHHHH-HHHHhcCC
Confidence 457888876444433333 3 23489999999999554 45555555554 66887666543 23333 45566788
Q ss_pred eEEEecc
Q 048242 119 ALVFVDQ 125 (430)
Q Consensus 119 ~~vi~~~ 125 (430)
+.++...
T Consensus 214 ~~~~~~~ 220 (353)
T 4dup_A 214 KRGINYR 220 (353)
T ss_dssp SEEEETT
T ss_pred CEEEeCC
Confidence 8777543
No 155
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=23.41 E-value=2.3e+02 Score=25.57 Aligned_cols=55 Identities=16% Similarity=0.130 Sum_probs=36.7
Q ss_pred HHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC-eeeeccccCChhhHHHHHhhcCce
Q 048242 61 ALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA-VLNCINFRLNPLNVAIILGHAEAA 119 (430)
Q Consensus 61 ~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~-~~~~l~~~~~~~~l~~~l~~~~~~ 119 (430)
.|...++++|++|+|+...+.-.+++++|-. .|+ .++.+.. +++.+ ..+++.++.
T Consensus 177 al~~~~~~~g~~VlV~GaG~vG~~aiqlak~-~Ga~~Vi~~~~--~~~~~-~~a~~lGa~ 232 (398)
T 2dph_A 177 GCVSAGVKPGSHVYIAGAGPVGRCAAAGARL-LGAACVIVGDQ--NPERL-KLLSDAGFE 232 (398)
T ss_dssp HHHHTTCCTTCEEEEECCSHHHHHHHHHHHH-HTCSEEEEEES--CHHHH-HHHHTTTCE
T ss_pred HHHHcCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEEcC--CHHHH-HHHHHcCCc
Confidence 3445689999999999875556777777654 587 5555543 23333 456778886
No 156
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*
Probab=23.37 E-value=3.4e+02 Score=25.08 Aligned_cols=61 Identities=10% Similarity=0.019 Sum_probs=44.5
Q ss_pred HcC-CCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEecc
Q 048242 64 QLS-IGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQ 125 (430)
Q Consensus 64 ~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~ 125 (430)
+.| +++|+.|+ ....+-.-+.+.+++.+.|.-++.+-|...+..-...++..++++++++.
T Consensus 154 ~~G~l~~g~tVV-~aSsGN~G~AlA~aaa~~Gi~~~IvmP~~~s~~k~~~l~~~GAeVv~v~~ 215 (435)
T 1jbq_A 154 RDGTLKPGDTII-EPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPT 215 (435)
T ss_dssp HHTCSCTTCEEE-EECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC
T ss_pred HcCCCCCCCEEE-EeCCCHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhCCCEEEEecC
Confidence 345 46676543 34556666777788889998877776666666677889999999999874
No 157
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=23.00 E-value=2.4e+02 Score=25.21 Aligned_cols=78 Identities=12% Similarity=0.044 Sum_probs=47.6
Q ss_pred eeeeHHHHHHHHHHHHH---HHH-HcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC-eeeeccccCChhhHHHHHhhcCc
Q 048242 44 KHYTWQQTYQRCRRLAS---ALS-QLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA-VLNCINFRLNPLNVAIILGHAEA 118 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~---~L~-~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~-~~~~l~~~~~~~~l~~~l~~~~~ 118 (430)
..+++.+.......++. .+. ..++++|++|+|+..-.+-.+++++|-. .|+ .++.+... ++.+ ..+++.++
T Consensus 166 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~-~Ga~~Vi~~~~~--~~~~-~~a~~lGa 241 (376)
T 1e3i_A 166 DEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKI-AGASRIIAIDIN--GEKF-PKAKALGA 241 (376)
T ss_dssp TTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEECSC--GGGH-HHHHHTTC
T ss_pred CCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCC--HHHH-HHHHHhCC
Confidence 45788775544322222 232 3589999999999865566666776654 587 45555432 3333 34567888
Q ss_pred eEEEecc
Q 048242 119 ALVFVDQ 125 (430)
Q Consensus 119 ~~vi~~~ 125 (430)
+.++...
T Consensus 242 ~~vi~~~ 248 (376)
T 1e3i_A 242 TDCLNPR 248 (376)
T ss_dssp SEEECGG
T ss_pred cEEEccc
Confidence 8777544
No 158
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=22.89 E-value=60 Score=28.15 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=21.4
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcC
Q 048242 44 KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSP 78 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ 78 (430)
+.+|-.+ +.+.|.++||++||.|.+...
T Consensus 20 ~~~T~~~-------L~~~L~~LGI~~Gd~llVHsS 47 (286)
T 3sma_A 20 ELVTRDR-------LASDLAALGVRPGGVLLVHAS 47 (286)
T ss_dssp CEECHHH-------HHHHHHHHTCCTTCEEEEEEC
T ss_pred CCcCHHH-------HHHHHHHcCCCCCCEEEEEec
Confidence 4566554 566788899999999998854
No 159
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=22.86 E-value=1.5e+02 Score=26.12 Aligned_cols=84 Identities=10% Similarity=0.073 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHc--CCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeecccc--CChh---hHHHHHhhcCceEE
Q 048242 49 QQTYQRCRRLASALSQL--SIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFR--LNPL---NVAIILGHAEAALV 121 (430)
Q Consensus 49 ~el~~~~~~la~~L~~~--gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~--~~~~---~l~~~l~~~~~~~v 121 (430)
+.+..+..++-..+.+. .+....+..+...+...++.--+++-..|. ..+++. -++. ++...+++.++++|
T Consensus 180 ~~~~~~L~~Ld~~~~~~l~~~~~~~r~~v~~H~af~Yfa~~yGL~~~~~--~~~~~~~eps~~~l~~l~~~ik~~~v~~I 257 (321)
T 1xvl_A 180 AVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLARDYGMEEIYM--WPINAEQQFTPKQVQTVIEEVKTNNVPTI 257 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGCEEEEEESTTHHHHHHTTCEEEEE--ESSSSSCSCCHHHHHHHHHHHHTTTCSEE
T ss_pred HHHHHHHHHHHHHHHHHHhhCcccCCEEEEECchHHHHHHHCCCeEEEe--eccCCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 34444444444444432 333233455566667888888888776552 334433 3343 45566788899999
Q ss_pred EeccccHHHHHHH
Q 048242 122 FVDQQYFALAEEA 134 (430)
Q Consensus 122 i~~~~~~~~~~~~ 134 (430)
|++........+.
T Consensus 258 f~e~~~~~~~~~~ 270 (321)
T 1xvl_A 258 FCESTVSDKGQKQ 270 (321)
T ss_dssp EEETTSCSHHHHH
T ss_pred EEeCCCChHHHHH
Confidence 9988765544333
No 160
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=22.85 E-value=2.3e+02 Score=20.72 Aligned_cols=42 Identities=7% Similarity=0.040 Sum_probs=26.1
Q ss_pred HHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeec
Q 048242 59 ASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCI 100 (430)
Q Consensus 59 a~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l 100 (430)
+.+|.+.|+.+...+.+...+..+.+.++-=++++|...+.|
T Consensus 47 ~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl 88 (119)
T 1ofu_X 47 HEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVV 88 (119)
T ss_dssp HHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEE
Confidence 455666677666555555556667777777777776654444
No 161
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=22.79 E-value=2.1e+02 Score=25.61 Aligned_cols=78 Identities=9% Similarity=0.048 Sum_probs=49.1
Q ss_pred eeeeHHHHHHHHHHHHH---HH-HHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC-eeeeccccCChhhHHHHHhhcCc
Q 048242 44 KHYTWQQTYQRCRRLAS---AL-SQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA-VLNCINFRLNPLNVAIILGHAEA 118 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~---~L-~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~-~~~~l~~~~~~~~l~~~l~~~~~ 118 (430)
..+++.+.......+.. .+ ...++++|++|+|+..-.+-.+++++|- ..|+ .++.+... ++. ..++++.++
T Consensus 164 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~-~~Ga~~Vi~~~~~--~~~-~~~a~~lGa 239 (378)
T 3uko_A 164 PTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAK-TAGASRIIGIDID--SKK-YETAKKFGV 239 (378)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHH-HHTCSCEEEECSC--TTH-HHHHHTTTC
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCC--HHH-HHHHHHcCC
Confidence 45788776554322222 23 3358999999999987556666666665 5687 56655433 233 336778898
Q ss_pred eEEEecc
Q 048242 119 ALVFVDQ 125 (430)
Q Consensus 119 ~~vi~~~ 125 (430)
+.++...
T Consensus 240 ~~vi~~~ 246 (378)
T 3uko_A 240 NEFVNPK 246 (378)
T ss_dssp CEEECGG
T ss_pred cEEEccc
Confidence 8877654
No 162
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=22.73 E-value=2.7e+02 Score=24.78 Aligned_cols=58 Identities=10% Similarity=0.149 Sum_probs=38.3
Q ss_pred HcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC-eeeeccccCChhhHHHHHhhcCceEEEecc
Q 048242 64 QLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA-VLNCINFRLNPLNVAIILGHAEAALVFVDQ 125 (430)
Q Consensus 64 ~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~-~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~ 125 (430)
..++++|++|+|+...+.-..++++|-. .|+ .++.+... ++. ..++++.+++.++...
T Consensus 185 ~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~~Vi~~~~~--~~~-~~~a~~lGa~~vi~~~ 243 (371)
T 1f8f_A 185 ALKVTPASSFVTWGAGAVGLSALLAAKV-CGASIIIAVDIV--ESR-LELAKQLGATHVINSK 243 (371)
T ss_dssp TTCCCTTCEEEEESCSHHHHHHHHHHHH-HTCSEEEEEESC--HHH-HHHHHHHTCSEEEETT
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEECCC--HHH-HHHHHHcCCCEEecCC
Confidence 4589999999999865556666776654 587 45555432 333 3455777888777643
No 163
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=22.68 E-value=2.7e+02 Score=21.48 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEeccCc-hhhhhhHHHHHHHhhcceEEEe--CCCCHHHHHHHHHhhCceEEeecc----
Q 048242 219 AAYLMSLNVVLTWGMKEGAVYLWTLPI-FHGNGWCFTWSLAALCGTSVML--RQASAKAIYKAIAEHGVTNFCAAP---- 291 (430)
Q Consensus 219 ~l~~~~~~~~~~~~~~~~~~~~~~~pl-~h~~gl~~~~~~l~~g~~~v~~--~~~~~~~~~~~l~~~~vt~~~~~p---- 291 (430)
..+..+......-.-....+++.+.+- .|..|...+-..+...+--|+. ....++.+.+.+.++++.++..+-
T Consensus 2 ~~l~~l~~~~~~~~~~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~ 81 (161)
T 2yxb_A 2 SSLQSTRERVLGTPRRRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGA 81 (161)
T ss_dssp --------------CCSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSSC
T ss_pred ccHHHHHHHHHhhcCCCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeechh
Q ss_pred --HHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHhcCc
Q 048242 292 --IVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGF 335 (430)
Q Consensus 292 --~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~ 335 (430)
..+..+.+..+... +..++.++-| ++..+....+++.|+
T Consensus 82 ~~~~~~~~i~~L~~~g---~~~i~v~vGG--~~~~~~~~~l~~~G~ 122 (161)
T 2yxb_A 82 HLHLMKRLMAKLRELG---ADDIPVVLGG--TIPIPDLEPLRSLGI 122 (161)
T ss_dssp HHHHHHHHHHHHHHTT---CTTSCEEEEE--CCCHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHhcC---CCCCEEEEeC--CCchhcHHHHHHCCC
No 164
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Probab=22.35 E-value=2.1e+02 Score=25.43 Aligned_cols=78 Identities=13% Similarity=-0.001 Sum_probs=47.5
Q ss_pred eeeeHHHHHHHHHH---HHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceE
Q 048242 44 KHYTWQQTYQRCRR---LASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAAL 120 (430)
Q Consensus 44 ~~~Ty~el~~~~~~---la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ 120 (430)
..+++.+....... .-+.|.+.++++|++|+|+...+.-..++++|-. .|+.++.+... ++.+ ..+++.+++.
T Consensus 151 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~~~qlak~-~Ga~Vi~~~~~--~~~~-~~~~~lGa~~ 226 (360)
T 1piw_A 151 ENIPSHLAAPLLCGGLTVYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKA-MGAETYVISRS--SRKR-EDAMKMGADH 226 (360)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHHTTCSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESS--STTH-HHHHHHTCSE
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEcCC--HHHH-HHHHHcCCCE
Confidence 45777765422211 1234445689999999999885566677776654 68776555433 2222 3345577877
Q ss_pred EEecc
Q 048242 121 VFVDQ 125 (430)
Q Consensus 121 vi~~~ 125 (430)
++...
T Consensus 227 v~~~~ 231 (360)
T 1piw_A 227 YIATL 231 (360)
T ss_dssp EEEGG
T ss_pred EEcCc
Confidence 77543
No 165
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=22.32 E-value=1.4e+02 Score=22.50 Aligned_cols=10 Identities=20% Similarity=0.072 Sum_probs=7.3
Q ss_pred CCcceEEECC
Q 048242 34 PTRKSVVYES 43 (430)
Q Consensus 34 p~~~a~~~~~ 43 (430)
|.++|++..+
T Consensus 22 p~~iaVVGas 31 (144)
T 2d59_A 22 YKKIALVGAS 31 (144)
T ss_dssp CCEEEEETCC
T ss_pred CCEEEEEccC
Confidence 7788888643
No 166
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=22.17 E-value=3.3e+02 Score=25.32 Aligned_cols=69 Identities=9% Similarity=-0.014 Sum_probs=49.6
Q ss_pred HHHHHHHHcC-CCCCCeEEEEcCCchhHHHHHHHhhh----cC--CeeeeccccCC-h------hhHHHHHhhcCceEEE
Q 048242 57 RLASALSQLS-IGPGTAVSVLSPNVPAMYEVHFGVPM----TG--AVLNCINFRLN-P------LNVAIILGHAEAALVF 122 (430)
Q Consensus 57 ~la~~L~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~----~G--~~~~~l~~~~~-~------~~l~~~l~~~~~~~vi 122 (430)
++.+.+.+.+ +.++++|++.+.-+.++.+++..+.. .| ..++.++..+. . +.+..+.+..+..+.+
T Consensus 4 kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v 83 (464)
T 3a2k_A 4 KVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCET 83 (464)
T ss_dssp HHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEE
Confidence 4556666655 57889999999999999888777765 34 55667777665 2 3466777888888877
Q ss_pred ecc
Q 048242 123 VDQ 125 (430)
Q Consensus 123 ~~~ 125 (430)
.+-
T Consensus 84 ~~~ 86 (464)
T 3a2k_A 84 AQI 86 (464)
T ss_dssp EEC
T ss_pred EEe
Confidence 643
No 167
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=21.88 E-value=4e+02 Score=23.58 Aligned_cols=25 Identities=0% Similarity=-0.263 Sum_probs=14.7
Q ss_pred CCCCCCceEEech-HHHHHHHHHHHh
Q 048242 205 GTTANPKGVLVSH-RAAYLMSLNVVL 229 (430)
Q Consensus 205 GttG~pK~v~~t~-~~l~~~~~~~~~ 229 (430)
|..|.+-|.++.. +.+...+.....
T Consensus 241 ~~~G~r~G~~~~~~~~~~~~l~~~~~ 266 (399)
T 1c7n_A 241 NIAGMGMSNIIIKNPDIRERFTKSRD 266 (399)
T ss_dssp TCGGGCCEEEECCCHHHHHHHHHHHH
T ss_pred cccchheEEEEECCHHHHHHHHHHHh
Confidence 3356667877765 556666554433
No 168
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=21.77 E-value=1.8e+02 Score=23.24 Aligned_cols=50 Identities=14% Similarity=0.330 Sum_probs=34.2
Q ss_pred CCCCCCeEEEEcCCch--hHHHHHHHhhhcCCeeeeccccC--ChhhHHHHHhhc
Q 048242 66 SIGPGTAVSVLSPNVP--AMYEVHFGVPMTGAVLNCINFRL--NPLNVAIILGHA 116 (430)
Q Consensus 66 gv~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~~~l~~~~--~~~~l~~~l~~~ 116 (430)
|+.+|+.++|+.+++. ..++..++. ..|..++.++... +...+..+.+..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~~~~~~~~~~~~~~~ 69 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEGGFSPERLVQMAETR 69 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSCCCCHHHHHHHHHTT
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999986 455555555 6666666665544 666666655443
No 169
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*
Probab=21.62 E-value=2.9e+02 Score=24.26 Aligned_cols=78 Identities=15% Similarity=0.137 Sum_probs=46.6
Q ss_pred eeeeHHHHHHHHHH---HHHHHHHcCCCCCCeEEEEcCC-chhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCce
Q 048242 44 KHYTWQQTYQRCRR---LASALSQLSIGPGTAVSVLSPN-VPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAA 119 (430)
Q Consensus 44 ~~~Ty~el~~~~~~---la~~L~~~gv~~g~~V~i~~~n-~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~ 119 (430)
..+++.+....... .-+.|.+.++++|++|+|.... ++-..++.++....|+.++.+..+ ++.+ ..+++.+++
T Consensus 142 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~--~~~~-~~~~~~g~~ 218 (347)
T 1jvb_A 142 RRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR--EEAV-EAAKRAGAD 218 (347)
T ss_dssp SSSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS--HHHH-HHHHHHTCS
T ss_pred CCCCHHHcccchhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCC--HHHH-HHHHHhCCC
Confidence 45677665422221 1233445689999999999887 566666666664438876655432 3333 334566777
Q ss_pred EEEec
Q 048242 120 LVFVD 124 (430)
Q Consensus 120 ~vi~~ 124 (430)
.++..
T Consensus 219 ~~~~~ 223 (347)
T 1jvb_A 219 YVINA 223 (347)
T ss_dssp EEEET
T ss_pred EEecC
Confidence 66643
No 170
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=21.53 E-value=4e+02 Score=23.62 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=29.7
Q ss_pred CCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhc---CceEEEec
Q 048242 67 IGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHA---EAALVFVD 124 (430)
Q Consensus 67 v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~---~~~~vi~~ 124 (430)
+++||.|.+..+....+ .-++...|+.+++++. ...+.+...++.. ++++|++.
T Consensus 124 ~~~gd~V~~~~p~~~~~---~~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~ 180 (398)
T 3a2b_A 124 MGRNDYILLDERDHASI---IDGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTD 180 (398)
T ss_dssp SCTTCEEEEETTCCHHH---HHHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEE
T ss_pred hCCCCEEEECCccCHHH---HHHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEe
Confidence 35667666665544333 2234445666666643 4556666666654 55666654
No 171
>3acd_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 3acc_A* 3acb_A*
Probab=21.32 E-value=1.5e+02 Score=23.48 Aligned_cols=44 Identities=9% Similarity=0.054 Sum_probs=29.3
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHH
Q 048242 44 KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHF 88 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 88 (430)
.-+|..|+.+++.++|+.+.+.- +..+.|.+...++--.++..|
T Consensus 12 vlis~~~I~~~i~rlA~eI~e~~-~~~~~vlvgIl~Gg~~fa~~L 55 (181)
T 3acd_A 12 VQISAEAIKKRVEELGGEIARDY-QGKTPHLICVLNGAFIFMADL 55 (181)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHT-TTCCCEEEEEETTTHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHHHHHHh-CCCCcEEEEEecCcHHHHHHH
Confidence 45899999999999999998752 223345555555544444444
No 172
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=21.20 E-value=1.9e+02 Score=26.22 Aligned_cols=56 Identities=18% Similarity=0.069 Sum_probs=38.7
Q ss_pred CCCCCCeEEEEcCCchhHHHHHHHhhhcCC-eeeeccccCChhhHHHHHhhcCceEEEecc
Q 048242 66 SIGPGTAVSVLSPNVPAMYEVHFGVPMTGA-VLNCINFRLNPLNVAIILGHAEAALVFVDQ 125 (430)
Q Consensus 66 gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~-~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~ 125 (430)
++++|++|+|+.....-.+++++|- ..|+ .++.+... + +-..++++.+++.++...
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~--~-~~~~~~~~lGa~~vi~~~ 266 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILK-HAGASKVILSEPS--E-VRRNLAKELGADHVIDPT 266 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSC--H-HHHHHHHHHTCSEEECTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECCC--H-HHHHHHHHcCCCEEEcCC
Confidence 7999999999987556667777765 5688 55555432 3 334466778888887543
No 173
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}
Probab=21.12 E-value=2.6e+02 Score=24.46 Aligned_cols=78 Identities=10% Similarity=-0.099 Sum_probs=47.9
Q ss_pred eeeeHHHHHH---HHHHHHHHH-HHcCCCCCCeEEEEcCC-chhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCc
Q 048242 44 KHYTWQQTYQ---RCRRLASAL-SQLSIGPGTAVSVLSPN-VPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEA 118 (430)
Q Consensus 44 ~~~Ty~el~~---~~~~la~~L-~~~gv~~g~~V~i~~~n-~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~ 118 (430)
..+++.+... ..-.....+ ...++++|++|+|.... ++-..++.+|. ..|+.++.+..+. +.+ ..+++.++
T Consensus 115 ~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~-~~Ga~Vi~~~~~~--~~~-~~~~~lga 190 (340)
T 3gms_A 115 DSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQ-ILNFRLIAVTRNN--KHT-EELLRLGA 190 (340)
T ss_dssp TTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEESSS--TTH-HHHHHHTC
T ss_pred CCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHH-HcCCEEEEEeCCH--HHH-HHHHhCCC
Confidence 4578877652 111222233 34589999999999877 56666666665 5688777665432 222 34455778
Q ss_pred eEEEecc
Q 048242 119 ALVFVDQ 125 (430)
Q Consensus 119 ~~vi~~~ 125 (430)
+.++...
T Consensus 191 ~~~~~~~ 197 (340)
T 3gms_A 191 AYVIDTS 197 (340)
T ss_dssp SEEEETT
T ss_pred cEEEeCC
Confidence 8777543
No 174
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=21.08 E-value=3.7e+02 Score=23.44 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=24.8
Q ss_pred CCCCeEEEEcCCchhHHHHHHHhhhcCCeeeecc--cc----CChhhHHHHHhh----cCceEEEe
Q 048242 68 GPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCIN--FR----LNPLNVAIILGH----AEAALVFV 123 (430)
Q Consensus 68 ~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~--~~----~~~~~l~~~l~~----~~~~~vi~ 123 (430)
++||.|++.-+....... ++...|+.++.++ .+ ...+.+...+++ -++++|++
T Consensus 91 ~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~ 153 (371)
T 2e7j_A 91 KKDAWVVMDENCHYSSYV---AAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALI 153 (371)
T ss_dssp CTTCEEEEETTCCHHHHH---HHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEE
T ss_pred CCCCEEEEccCcchHHHH---HHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEE
Confidence 456666555443332222 2445565555444 21 244556665553 24455544
No 175
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=21.05 E-value=3.9e+02 Score=24.48 Aligned_cols=58 Identities=10% Similarity=0.153 Sum_probs=33.9
Q ss_pred CCCCCeEEEEc-CCchhHHHHH-------HHhhhcCCeeeecccc----CChhhHHHHHhhcCceEEEecc
Q 048242 67 IGPGTAVSVLS-PNVPAMYEVH-------FGVPMTGAVLNCINFR----LNPLNVAIILGHAEAALVFVDQ 125 (430)
Q Consensus 67 v~~g~~V~i~~-~n~~~~~~~~-------lA~~~~G~~~~~l~~~----~~~~~l~~~l~~~~~~~vi~~~ 125 (430)
+++||.|.+.- +.-..+...+ -.+...|+.+..++.+ ...+.+...++. ++++|+++.
T Consensus 104 ~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~-~tk~V~i~~ 173 (431)
T 3ht4_A 104 LRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHS-NTKMIGIQR 173 (431)
T ss_dssp CCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCT-TEEEEEEEC
T ss_pred CCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCC-CCeEEEEEC
Confidence 67899877665 3322222111 1223467777776553 456777777764 678888763
No 176
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=20.96 E-value=3.8e+02 Score=28.91 Aligned_cols=79 Identities=9% Similarity=-0.047 Sum_probs=58.1
Q ss_pred EechHHHHHHHHHHHh---hcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC-CCCHHHHHHHHHhhCceEEee
Q 048242 214 LVSHRAAYLMSLNVVL---TWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR-QASAKAIYKAIAEHGVTNFCA 289 (430)
Q Consensus 214 ~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~-~~~~~~~~~~l~~~~vt~~~~ 289 (430)
.+|++.|...+..+.. ..+++.++++..+++-.. -.++.+++.+..|+..+.++ .....++...+++.++.++..
T Consensus 489 ~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~-~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~ 567 (1304)
T 2vsq_A 489 TLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSL-ELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLT 567 (1304)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSH-HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEE
T ss_pred eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCH-HHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEE
Confidence 5899888666554443 357889999988888643 22445677777888888886 456788889999999999887
Q ss_pred ccHH
Q 048242 290 APIV 293 (430)
Q Consensus 290 ~p~~ 293 (430)
.+..
T Consensus 568 ~~~~ 571 (1304)
T 2vsq_A 568 HQEM 571 (1304)
T ss_dssp CSTT
T ss_pred Ccch
Confidence 6654
No 177
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=20.95 E-value=2.3e+02 Score=24.79 Aligned_cols=62 Identities=3% Similarity=0.057 Sum_probs=39.0
Q ss_pred eEEEEcCCchhHHHHHHHhhhcCCeeeeccc--cCChhh---HHHHHhhcCceEEEeccccHHHHHHHH
Q 048242 72 AVSVLSPNVPAMYEVHFGVPMTGAVLNCINF--RLNPLN---VAIILGHAEAALVFVDQQYFALAEEAL 135 (430)
Q Consensus 72 ~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~--~~~~~~---l~~~l~~~~~~~vi~~~~~~~~~~~~~ 135 (430)
+..+...+...++.--+++-..|.. -+++ .-++.+ +...+++.++++||++........+.+
T Consensus 191 ~~~v~~H~af~Yfa~~yGl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~i 257 (312)
T 2o1e_A 191 KEFITQHTAFGYLAKEYGLKQVPIA--GLSPDQEPSAASLAKLKTYAKEHNVKVIYFEEIASSKVADTL 257 (312)
T ss_dssp CEEEESSCTTHHHHHHTTCEEEECS--SCCSSSCCCHHHHHHHHHHTTSSCCCEEECSSCCCHHHHHHH
T ss_pred CEEEEECCchHHHHHHCCCeEEEee--ccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHH
Confidence 4455666678888777777665432 2232 334444 555567789999999987766544443
No 178
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=20.95 E-value=3e+02 Score=24.49 Aligned_cols=78 Identities=13% Similarity=0.071 Sum_probs=47.3
Q ss_pred eeeeHHHHHHHHHHHHH---HHH-HcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC-eeeeccccCChhhHHHHHhhcCc
Q 048242 44 KHYTWQQTYQRCRRLAS---ALS-QLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA-VLNCINFRLNPLNVAIILGHAEA 118 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~---~L~-~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~-~~~~l~~~~~~~~l~~~l~~~~~ 118 (430)
..+++.+.......++. .+. ..++++|++|+|....+.-..++++|-. .|+ .++.+.. +++.+ ..+++.++
T Consensus 163 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~-~Ga~~Vi~~~~--~~~~~-~~~~~lGa 238 (374)
T 1cdo_A 163 PSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHS-AGAKRIIAVDL--NPDKF-EKAKVFGA 238 (374)
T ss_dssp TTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEECS--CGGGH-HHHHHTTC
T ss_pred CCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEEcC--CHHHH-HHHHHhCC
Confidence 45777775544322222 232 3589999999999865566666666654 587 4555543 23333 34567888
Q ss_pred eEEEecc
Q 048242 119 ALVFVDQ 125 (430)
Q Consensus 119 ~~vi~~~ 125 (430)
+.++...
T Consensus 239 ~~vi~~~ 245 (374)
T 1cdo_A 239 TDFVNPN 245 (374)
T ss_dssp CEEECGG
T ss_pred ceEEecc
Confidence 8777543
No 179
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=20.85 E-value=1.6e+02 Score=26.00 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=8.9
Q ss_pred HHHHHHHHhcCcEEEe
Q 048242 324 PPILLAMSQKGFRVTH 339 (430)
Q Consensus 324 ~~~~~~~~~~~~~v~~ 339 (430)
.++.+.+.+.|+.+..
T Consensus 302 ~~~~~~l~~~gi~v~~ 317 (382)
T 4eb5_A 302 ESIVLSLDMAGIQAST 317 (382)
T ss_dssp HHHHHHHHHHTCBCBC
T ss_pred HHHHHHHHHCCEEEec
Confidence 3556666555665543
No 180
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1
Probab=20.51 E-value=3.7e+02 Score=24.02 Aligned_cols=78 Identities=14% Similarity=0.066 Sum_probs=46.7
Q ss_pred eeeeHHHHHHHHHHHH---HHHHHcC-CCCCCeEEEEcCCchhHHHHHHHhhhcCC-eeeeccccCChhhHHHHHhhcCc
Q 048242 44 KHYTWQQTYQRCRRLA---SALSQLS-IGPGTAVSVLSPNVPAMYEVHFGVPMTGA-VLNCINFRLNPLNVAIILGHAEA 118 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la---~~L~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~-~~~~l~~~~~~~~l~~~l~~~~~ 118 (430)
..+++.+.......++ +.|...+ +++|++|+|....+.-..++++|- ..|+ .++.+.. +++. ...+++.++
T Consensus 166 ~~l~~~~~Aa~~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~--~~~~-~~~~~~lGa 241 (380)
T 1vj0_A 166 EKDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIAR-SLGAENVIVIAG--SPNR-LKLAEEIGA 241 (380)
T ss_dssp TTSCHHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHH-HTTBSEEEEEES--CHHH-HHHHHHTTC
T ss_pred CCCChHHhHhhhcHHHHHHHHHHhcCCCCCCCEEEEECcCHHHHHHHHHHH-HcCCceEEEEcC--CHHH-HHHHHHcCC
Confidence 4577763332322222 2344457 999999999995556666666665 4584 5555543 2333 445667888
Q ss_pred eEEEecc
Q 048242 119 ALVFVDQ 125 (430)
Q Consensus 119 ~~vi~~~ 125 (430)
+.++...
T Consensus 242 ~~vi~~~ 248 (380)
T 1vj0_A 242 DLTLNRR 248 (380)
T ss_dssp SEEEETT
T ss_pred cEEEecc
Confidence 8877643
No 181
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=20.40 E-value=2.9e+02 Score=24.62 Aligned_cols=78 Identities=8% Similarity=-0.011 Sum_probs=47.1
Q ss_pred eeeeHHHHHHHHHHHHH---HHH-HcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC-eeeeccccCChhhHHHHHhhcCc
Q 048242 44 KHYTWQQTYQRCRRLAS---ALS-QLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA-VLNCINFRLNPLNVAIILGHAEA 118 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~---~L~-~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~-~~~~l~~~~~~~~l~~~l~~~~~ 118 (430)
..+++.+.......++. .|. ..++++|++|+|....+.-..++++|-. .|+ .++.+... ++.+ ..+++.++
T Consensus 162 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~-~Ga~~Vi~~~~~--~~~~-~~~~~lGa 237 (374)
T 2jhf_A 162 AASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKA-AGAARIIGVDIN--KDKF-AKAKEVGA 237 (374)
T ss_dssp TTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEECSC--GGGH-HHHHHTTC
T ss_pred CCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCC--HHHH-HHHHHhCC
Confidence 45777775544322222 233 3589999999999865566666776654 587 45555432 3333 34567788
Q ss_pred eEEEecc
Q 048242 119 ALVFVDQ 125 (430)
Q Consensus 119 ~~vi~~~ 125 (430)
+.++...
T Consensus 238 ~~vi~~~ 244 (374)
T 2jhf_A 238 TECVNPQ 244 (374)
T ss_dssp SEEECGG
T ss_pred ceEeccc
Confidence 8777543
No 182
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=20.39 E-value=3.1e+02 Score=24.47 Aligned_cols=68 Identities=12% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeecccc----CChhhHHHHHhhcCceEEEec
Q 048242 55 CRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFR----LNPLNVAIILGHAEAALVFVD 124 (430)
Q Consensus 55 ~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~----~~~~~l~~~l~~~~~~~vi~~ 124 (430)
...+...+... +++||.|.+..+...... ..-++...|+.++.++.. ...+.+...+++.++++|+..
T Consensus 72 t~al~~~~~~l-~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~ 143 (416)
T 3isl_A 72 RAGIEAVLASV-IEPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMV 143 (416)
T ss_dssp HHHHHHHHHHH-CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHHh-cCCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEE
No 183
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=20.23 E-value=1.8e+02 Score=24.42 Aligned_cols=70 Identities=6% Similarity=-0.028 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcC----CeeeeccccCC--hhhHHHHHhhcCceEEEeccc
Q 048242 54 RCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTG----AVLNCINFRLN--PLNVAIILGHAEAALVFVDQQ 126 (430)
Q Consensus 54 ~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G----~~~~~l~~~~~--~~~l~~~l~~~~~~~vi~~~~ 126 (430)
..+++..+|.+. .++.|++.+.-+.++.++..-+.+++ ...+.++...+ .+....+.+..++++.+.+-+
T Consensus 9 ~~~~l~~~i~~~---~~~~vvv~lSGGiDSs~~~~l~~~~~g~~~v~av~~~~~~~~~~~~a~~~a~~lgi~~~~i~i~ 84 (257)
T 2e18_A 9 VIERILEFIREK---GNNGVVIGISGGVDSATVAYLATKALGKEKVLGLIMPYFENKDVEDAKLVAEKLGIGYKVINIK 84 (257)
T ss_dssp HHHHHHHHHHHH---CTTCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCSSCSTHHHHHHHHHHHHTCEEEECCCH
T ss_pred HHHHHHHHHHHh---CCCcEEEEecCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCchHHHHHHHHHHHhCCCEEEEECh
Confidence 344556666665 34578899999999977665555553 23344443332 334566667788887776543
No 184
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A
Probab=20.23 E-value=2.7e+02 Score=25.62 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=47.7
Q ss_pred eeeeHHHHHHHHHHHHH---HHH---HcCCCCCCeEEEEcC-CchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhc
Q 048242 44 KHYTWQQTYQRCRRLAS---ALS---QLSIGPGTAVSVLSP-NVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHA 116 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~---~L~---~~gv~~g~~V~i~~~-n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~ 116 (430)
..+++.+........+. .|. ..++++|++|+|... ..+-..++++|. ..|+.++.+.. +.+.+ ..+++.
T Consensus 189 ~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~-~~Ga~vi~~~~--~~~~~-~~~~~l 264 (447)
T 4a0s_A 189 AHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVK-NGGGIPVAVVS--SAQKE-AAVRAL 264 (447)
T ss_dssp TTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEES--SHHHH-HHHHHT
T ss_pred CCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHH-HcCCEEEEEeC--CHHHH-HHHHhc
Confidence 45788776644333222 232 258999999999987 455556555555 57887666642 34443 445778
Q ss_pred CceEEEec
Q 048242 117 EAALVFVD 124 (430)
Q Consensus 117 ~~~~vi~~ 124 (430)
+++.++..
T Consensus 265 Ga~~~i~~ 272 (447)
T 4a0s_A 265 GCDLVINR 272 (447)
T ss_dssp TCCCEEEH
T ss_pred CCCEEEec
Confidence 88777653
No 185
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A*
Probab=20.23 E-value=2.5e+02 Score=24.59 Aligned_cols=53 Identities=8% Similarity=-0.038 Sum_probs=41.0
Q ss_pred EEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEecccc
Q 048242 75 VLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQY 127 (430)
Q Consensus 75 i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~ 127 (430)
+....+.....+.++|.+.|.-++.+-|...+......++..++++++++...
T Consensus 78 v~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~ 130 (323)
T 1v71_A 78 LTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRYK 130 (323)
T ss_dssp EECCSSHHHHHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEEECTTT
T ss_pred EEeCCCcHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHcCCEEEEECCCH
Confidence 33456777777888888999887776666666667888999999999998654
No 186
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=20.18 E-value=3e+02 Score=24.49 Aligned_cols=80 Identities=15% Similarity=0.117 Sum_probs=51.4
Q ss_pred eeeeHHHHHHHHHH--HHH-HHH-HcCCC-----CCCeEEEEc-CCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHH
Q 048242 44 KHYTWQQTYQRCRR--LAS-ALS-QLSIG-----PGTAVSVLS-PNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIIL 113 (430)
Q Consensus 44 ~~~Ty~el~~~~~~--la~-~L~-~~gv~-----~g~~V~i~~-~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l 113 (430)
..+++.+....... .|. .|. ..+++ +|++|+|.. ....-.+++++|-...|+.++.+... ++ -..++
T Consensus 137 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~--~~-~~~~~ 213 (363)
T 4dvj_A 137 KTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASR--PE-TQEWV 213 (363)
T ss_dssp TTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSS--HH-HHHHH
T ss_pred CCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCC--HH-HHHHH
Confidence 45777776544332 222 222 34777 899999998 56677788888776667776666543 33 34456
Q ss_pred hhcCceEEEeccc
Q 048242 114 GHAEAALVFVDQQ 126 (430)
Q Consensus 114 ~~~~~~~vi~~~~ 126 (430)
++.+++.++...+
T Consensus 214 ~~lGad~vi~~~~ 226 (363)
T 4dvj_A 214 KSLGAHHVIDHSK 226 (363)
T ss_dssp HHTTCSEEECTTS
T ss_pred HHcCCCEEEeCCC
Confidence 7789988886554
No 187
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=20.07 E-value=4.3e+02 Score=22.92 Aligned_cols=56 Identities=13% Similarity=0.064 Sum_probs=38.1
Q ss_pred CCCCCCeEEEEcCC-chhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEecc
Q 048242 66 SIGPGTAVSVLSPN-VPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQ 125 (430)
Q Consensus 66 gv~~g~~V~i~~~n-~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~ 125 (430)
++++|++|+|.... ++-..++++|. ..|+.++.+.. +.+.+. .+++.+++.++...
T Consensus 145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~-~~Ga~Vi~~~~--~~~~~~-~~~~~ga~~~~~~~ 201 (334)
T 3qwb_A 145 HVKKGDYVLLFAAAGGVGLILNQLLK-MKGAHTIAVAS--TDEKLK-IAKEYGAEYLINAS 201 (334)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHH-HTTCEEEEEES--SHHHHH-HHHHTTCSEEEETT
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHH-HHHHcCCcEEEeCC
Confidence 89999999999854 55556555554 57887766654 344444 66778888777643
No 188
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=20.04 E-value=2.6e+02 Score=24.84 Aligned_cols=78 Identities=10% Similarity=0.009 Sum_probs=47.3
Q ss_pred eeeeHHHHHHHHHHHHH---HHH-HcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC-eeeeccccCChhhHHHHHhhcCc
Q 048242 44 KHYTWQQTYQRCRRLAS---ALS-QLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA-VLNCINFRLNPLNVAIILGHAEA 118 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~---~L~-~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~-~~~~l~~~~~~~~l~~~l~~~~~ 118 (430)
..+++.+.......++. .|. ..++++|++|+|....+.-.+++++|-. .|+ .++.+... ++.+ ..+++.++
T Consensus 161 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~-~Ga~~Vi~~~~~--~~~~-~~~~~lGa 236 (373)
T 2fzw_A 161 PLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKV-AGASRIIGVDIN--KDKF-ARAKEFGA 236 (373)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHH-HTCSEEEEECSC--GGGH-HHHHHHTC
T ss_pred CCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCC--HHHH-HHHHHcCC
Confidence 45778775544322222 233 3489999999999875666777777654 587 45555432 3333 34567788
Q ss_pred eEEEecc
Q 048242 119 ALVFVDQ 125 (430)
Q Consensus 119 ~~vi~~~ 125 (430)
+.++...
T Consensus 237 ~~vi~~~ 243 (373)
T 2fzw_A 237 TECINPQ 243 (373)
T ss_dssp SEEECGG
T ss_pred ceEeccc
Confidence 7777543
No 189
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum}
Probab=20.01 E-value=3e+02 Score=24.56 Aligned_cols=55 Identities=7% Similarity=-0.028 Sum_probs=41.7
Q ss_pred EEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHH
Q 048242 75 VLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFA 129 (430)
Q Consensus 75 i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 129 (430)
+....+-.-..+.++|.+.|.-++.+-|...+......++..++++++++..+.+
T Consensus 112 v~assGN~g~a~A~aa~~~G~~~~iv~P~~~~~~k~~~~~~~GA~V~~v~~~~~~ 166 (366)
T 3iau_A 112 ITASAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFDE 166 (366)
T ss_dssp EEECSSHHHHHHHHHHHHTTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSSHHH
T ss_pred EEeCCCHHHHHHHHHHHHhCCceEEEeCCCCCHHHHHHHHHCCCeEEEECcCHHH
Confidence 3445567777777888899988877777766667778889999999999865433
Done!