BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048244
         (413 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ASY|A Chain A, Solution Structure Of Ydhr Protein From Escherichia Coli
 pdb|2ASY|B Chain B, Solution Structure Of Ydhr Protein From Escherichia Coli
          Length = 123

 Score = 29.3 bits (64), Expect = 3.7,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 11/77 (14%)

Query: 282 LATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVI------NTAPSIFLF---- 331
           +ATLL   F++  P GD +A  L  +  S+    G +W V       + A  I+LF    
Sbjct: 23  MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEK 82

Query: 332 -ALVQVTVHLAIILGLG 347
            AL  +  H A +  LG
Sbjct: 83  SALAYLEKHTARLKNLG 99


>pdb|2HIQ|A Chain A, Crystal Structure Of Jw1657 From Escherichia Coli
 pdb|2HIQ|B Chain B, Crystal Structure Of Jw1657 From Escherichia Coli
          Length = 113

 Score = 28.1 bits (61), Expect = 8.7,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 11/76 (14%)

Query: 283 ATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVI------NTAPSIFLF----- 331
           ATLL   F++  P GD +A  L  +  S+    G +W V       + A  I+LF     
Sbjct: 9   ATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKS 68

Query: 332 ALVQVTVHLAIILGLG 347
           AL  +  H A +  LG
Sbjct: 69  ALAYLEKHTARLKNLG 84


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,409,420
Number of Sequences: 62578
Number of extensions: 382309
Number of successful extensions: 884
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 8
length of query: 413
length of database: 14,973,337
effective HSP length: 101
effective length of query: 312
effective length of database: 8,652,959
effective search space: 2699723208
effective search space used: 2699723208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)