BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048244
         (413 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O31634|YJCL_BACSU Uncharacterized membrane protein YjcL OS=Bacillus subtilis (strain
           168) GN=yjcL PE=4 SV=1
          Length = 396

 Score =  169 bits (428), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/393 (30%), Positives = 194/393 (49%), Gaps = 27/393 (6%)

Query: 38  NPIISPNDHWGTWTALLVTGA--FGLWSEKTKLGSMVSAALVSTLLGLAASNLGIIPYEA 95
           + +IS +D W  W  + V  A   GL  ++ K  S VS A+++    +  +N+G++P E+
Sbjct: 2   HSLISSDDVWVLWGFIAVWAAVSIGL-EQRFKWASAVSGAIIALAGAMVFTNVGVLPVES 60

Query: 96  KAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRS 155
             Y     +++PL+IPLLLF+ ++R+I + +  LL  FL+ SV T +G+++AF L+    
Sbjct: 61  PVYDTVWSYVVPLAIPLLLFQINVRQIFKESRRLLFIFLISSVGTVLGSILAFFLLKQHI 120

Query: 156 LGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFMILFTL-- 213
              D  KI      SYIGG +N+ A++         ++A V ADN + A+ F IL ++  
Sbjct: 121 PYLD--KIGGMISASYIGGGVNFAAMAAKFETPGEYVSATVVADNFMMALLFFILISIPA 178

Query: 214 ------------ASKIPPEASPANGTE-VDKESNSEDKTPVLQTATALAISFVICKTATY 260
                         K+  + +  N  E   K  +   K        A A+  V  K + Y
Sbjct: 179 LKWFQRHYAMPFEEKVKADGNSGNSAESYWKRKDISLKDIAFNAGAAFALVAVSMKVSGY 238

Query: 261 LSNLF------GIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGA 314
             ++F      G  G     +T++ V++  L P+ F  L  + + L   L+ +FF V+G 
Sbjct: 239 FKSIFSHPLLTGTLGDQYLVLTSLTVLIIFLFPRFFERLNGSQE-LGTFLIYLFFVVIGI 297

Query: 315 SGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGM 374
              +  ++  AP I LF  +    +LA+ L  GKLF   L+ +L+A NA VGGPTTA  M
Sbjct: 298 PADLRLIVTNAPLILLFVFIIAISNLAVSLAAGKLFRVRLEEILLAVNATVGGPTTAAAM 357

Query: 375 ATTKGWGSLVVPGILAGIFGISMATFLGLGFGT 407
           A  KGW  LV P +L G  G  +  ++G   G 
Sbjct: 358 AIAKGWRELVAPIMLVGTLGYLIGNYVGTFMGN 390


>sp|P32660|ATC5_YEAST Phospholipid-transporting ATPase DNF1 OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=DNF1 PE=1 SV=2
          Length = 1571

 Score = 33.5 bits (75), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 206 YFMILFTLASKIPPEASPANGTEVDKESNSEDKTPVLQTATALAISFVICKTATYLSNLF 265
           +FM+   L   +  EA+P N  ++D ++ S D+  ++ TA  +  SFV       +  + 
Sbjct: 769 HFMLALALCHSVLVEANPDNPKKLDLKAQSPDEAALVATARDVGFSFVGKTKKGLIIEMQ 828

Query: 266 GIQ 268
           GIQ
Sbjct: 829 GIQ 831


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.138    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,855,263
Number of Sequences: 539616
Number of extensions: 5486125
Number of successful extensions: 16214
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 16133
Number of HSP's gapped (non-prelim): 179
length of query: 413
length of database: 191,569,459
effective HSP length: 120
effective length of query: 293
effective length of database: 126,815,539
effective search space: 37156952927
effective search space used: 37156952927
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)