Query 048244
Match_columns 413
No_of_seqs 145 out of 307
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 07:43:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05684 DUF819: Protein of un 100.0 2.6E-86 5.6E-91 673.7 41.2 358 51-413 1-378 (378)
2 COG5505 Predicted integral mem 100.0 5.3E-78 1.1E-82 581.2 34.6 358 45-409 4-381 (384)
3 PF03390 2HCT: 2-hydroxycarbox 100.0 4.3E-25 9.4E-30 225.0 34.7 349 43-398 27-407 (414)
4 COG3493 CitS Na+/citrate sympo 99.9 1.3E-22 2.7E-27 202.2 31.0 356 43-405 44-433 (438)
5 TIGR00783 ccs citrate carrier 99.8 4.1E-18 8.9E-23 171.0 25.0 305 85-397 3-339 (347)
6 PF03616 Glt_symporter: Sodium 98.6 0.00016 3.4E-09 74.4 31.3 304 49-361 8-342 (368)
7 TIGR00210 gltS sodium--glutama 98.1 0.014 3.1E-07 60.7 32.9 305 45-364 4-342 (398)
8 TIGR00210 gltS sodium--glutama 98.0 0.00025 5.4E-09 73.6 17.9 169 243-412 4-185 (398)
9 PF03616 Glt_symporter: Sodium 97.9 0.0005 1.1E-08 70.7 17.9 168 243-412 4-185 (368)
10 COG0786 GltS Na+/glutamate sym 97.8 0.021 4.6E-07 58.9 26.7 292 56-360 17-342 (404)
11 PF03601 Cons_hypoth698: Conse 97.8 0.0024 5.3E-08 64.1 19.5 158 53-215 6-167 (305)
12 COG2855 Predicted membrane pro 97.8 0.0085 1.8E-07 60.7 22.6 264 54-326 17-309 (334)
13 TIGR00698 conserved hypothetic 97.6 0.012 2.6E-07 59.9 21.9 162 49-217 6-175 (335)
14 PRK03659 glutathione-regulated 97.4 0.29 6.3E-06 53.6 35.9 87 299-386 265-352 (601)
15 PRK03562 glutathione-regulated 97.3 0.38 8.3E-06 52.9 32.8 62 299-360 268-329 (621)
16 COG0786 GltS Na+/glutamate sym 97.2 0.012 2.5E-07 60.8 15.4 170 242-412 5-186 (404)
17 COG0475 KefB Kef-type K+ trans 97.1 0.51 1.1E-05 49.1 34.4 316 45-378 6-352 (397)
18 PRK05326 potassium/proton anti 96.8 0.33 7.1E-06 52.6 23.7 296 46-365 7-341 (562)
19 PF05145 AmoA: Putative ammoni 96.6 0.96 2.1E-05 45.7 25.7 234 129-384 53-289 (318)
20 PRK10669 putative cation:proto 96.3 2.1 4.5E-05 46.3 32.0 89 300-389 277-366 (558)
21 PLN03159 cation/H(+) antiporte 96.1 3.8 8.2E-05 46.8 28.9 59 301-360 324-385 (832)
22 TIGR00932 2a37 transporter, mo 96.0 0.85 1.8E-05 44.4 18.7 145 60-214 8-159 (273)
23 TIGR00783 ccs citrate carrier 95.9 0.14 3E-06 52.4 13.0 108 71-181 203-317 (347)
24 COG3180 AbrB Putative ammonia 95.8 2.7 5.9E-05 43.2 29.2 304 48-383 9-321 (352)
25 PF03390 2HCT: 2-hydroxycarbox 95.0 0.3 6.6E-06 51.1 12.3 117 60-182 262-385 (414)
26 PF03601 Cons_hypoth698: Conse 94.4 0.64 1.4E-05 46.9 12.6 81 299-379 56-138 (305)
27 PRK12460 2-keto-3-deoxyglucona 94.4 2.2 4.8E-05 43.2 16.1 75 304-378 197-274 (312)
28 TIGR00698 conserved hypothetic 94.3 0.44 9.5E-06 48.7 11.2 81 70-150 249-330 (335)
29 PF00999 Na_H_Exchanger: Sodiu 93.8 0.0029 6.3E-08 64.2 -5.7 289 63-365 15-332 (380)
30 PRK12460 2-keto-3-deoxyglucona 93.7 0.75 1.6E-05 46.5 11.4 144 60-213 155-302 (312)
31 COG2855 Predicted membrane pro 93.7 0.6 1.3E-05 47.6 10.7 78 69-146 250-328 (334)
32 PF06826 Asp-Al_Ex: Predicted 93.0 0.89 1.9E-05 42.0 10.0 104 298-407 53-161 (169)
33 TIGR00841 bass bile acid trans 92.1 13 0.00029 36.7 27.2 260 99-407 4-277 (286)
34 COG3493 CitS Na+/citrate sympo 90.0 8.9 0.00019 40.0 14.2 147 29-184 248-406 (438)
35 TIGR03802 Asp_Ala_antiprt aspa 90.0 3.2 6.8E-05 45.3 11.8 107 299-409 448-558 (562)
36 PF05145 AmoA: Putative ammoni 85.7 43 0.00093 33.9 18.7 153 45-210 152-309 (318)
37 COG0679 Predicted permeases [G 85.6 42 0.00091 33.6 25.4 285 72-399 9-300 (311)
38 TIGR00844 c_cpa1 na(+)/h(+) an 85.0 17 0.00037 41.4 13.9 93 58-151 24-125 (810)
39 PF03547 Mem_trans: Membrane t 83.7 53 0.0011 33.3 26.3 134 72-212 6-143 (385)
40 PRK04972 putative transporter; 83.6 6.3 0.00014 43.0 9.7 108 298-409 442-553 (558)
41 TIGR01625 YidE_YbjL_dupl AspT/ 82.2 6.7 0.00015 35.7 7.8 79 298-379 53-136 (154)
42 TIGR00831 a_cpa1 Na+/H+ antipo 81.3 85 0.0018 33.9 17.4 128 52-190 6-136 (525)
43 PRK10669 putative cation:proto 80.0 54 0.0012 35.5 15.2 108 101-214 277-387 (558)
44 PRK03818 putative transporter; 79.3 23 0.0005 38.6 12.1 95 299-402 433-534 (552)
45 PF03956 DUF340: Membrane prot 77.9 9.5 0.00021 35.9 7.6 75 76-152 2-81 (191)
46 TIGR00946 2a69 he Auxin Efflux 77.3 75 0.0016 31.7 14.4 135 73-212 182-318 (321)
47 PRK04972 putative transporter; 77.3 14 0.00031 40.3 9.8 103 299-404 60-172 (558)
48 COG2985 Predicted permease [Ge 76.3 23 0.00049 38.2 10.5 105 298-408 427-537 (544)
49 PRK09903 putative transporter 76.2 87 0.0019 31.2 29.2 53 72-124 9-63 (314)
50 PRK03818 putative transporter; 74.6 18 0.0004 39.4 9.7 77 299-378 61-140 (552)
51 PRK04288 antiholin-like protei 73.8 92 0.002 30.4 16.2 109 246-355 11-123 (232)
52 COG1346 LrgB Putative effector 72.6 98 0.0021 30.2 16.1 152 245-401 8-167 (230)
53 TIGR03802 Asp_Ala_antiprt aspa 72.6 23 0.00049 38.8 9.9 40 51-90 13-53 (562)
54 TIGR00946 2a69 he Auxin Efflux 70.6 1.2E+02 0.0026 30.2 28.4 99 299-397 211-311 (321)
55 PF05684 DUF819: Protein of un 70.2 1.4E+02 0.0031 31.0 17.6 148 44-202 206-360 (378)
56 TIGR03082 Gneg_AbrB_dup membra 69.6 85 0.0018 28.2 13.4 75 309-386 57-134 (156)
57 TIGR00659 conserved hypothetic 64.9 1.4E+02 0.0031 29.0 15.8 110 244-355 4-117 (226)
58 PF03956 DUF340: Membrane prot 64.3 32 0.0007 32.4 7.8 75 298-386 23-102 (191)
59 PRK05274 2-keto-3-deoxyglucona 59.7 20 0.00043 36.6 5.9 106 304-412 204-314 (326)
60 PRK05274 2-keto-3-deoxyglucona 58.5 34 0.00073 35.0 7.3 76 62-140 164-239 (326)
61 COG4651 RosB Kef-type K+ trans 58.3 29 0.00063 35.5 6.6 71 300-370 277-349 (408)
62 TIGR00808 malonate_madM malona 57.3 1.6E+02 0.0035 28.5 11.0 161 48-215 16-188 (254)
63 COG0385 Predicted Na+-dependen 55.4 2.5E+02 0.0054 28.8 25.3 74 331-407 224-306 (319)
64 TIGR01109 Na_pump_decarbB sodi 54.5 2.6E+02 0.0057 28.8 21.9 271 53-352 5-295 (354)
65 PLN03159 cation/H(+) antiporte 53.8 3E+02 0.0066 31.7 14.7 110 98-213 320-435 (832)
66 TIGR03082 Gneg_AbrB_dup membra 51.3 1.8E+02 0.004 26.1 18.2 76 123-202 69-144 (156)
67 PRK10711 hypothetical protein; 50.6 2.5E+02 0.0054 27.4 15.0 137 251-400 12-164 (231)
68 COG2431 Predicted membrane pro 46.9 2.5E+02 0.0055 28.3 11.0 71 74-152 112-188 (297)
69 COG2985 Predicted permease [Ge 45.3 2.4E+02 0.0051 30.7 11.1 113 63-186 23-142 (544)
70 TIGR00771 DcuC c4-dicarboxylat 44.8 3.8E+02 0.0083 27.9 13.3 33 185-217 131-164 (388)
71 PF04172 LrgB: LrgB-like famil 42.4 3.2E+02 0.0069 26.3 12.6 100 254-355 4-107 (215)
72 COG1346 LrgB Putative effector 42.4 3.4E+02 0.0073 26.5 14.5 78 63-144 25-108 (230)
73 COG0679 Predicted permeases [G 42.2 3.6E+02 0.0079 26.9 14.9 103 299-405 35-146 (311)
74 PRK05326 potassium/proton anti 38.0 5.6E+02 0.012 27.8 13.5 78 298-377 60-138 (562)
75 PF06826 Asp-Al_Ex: Predicted 36.6 3.4E+02 0.0074 25.0 14.2 120 54-187 3-136 (169)
76 COG5486 Predicted metal-bindin 36.1 80 0.0017 31.2 5.6 67 14-80 194-271 (283)
77 PF06197 DUF998: Protein of un 36.0 3.1E+02 0.0068 24.4 11.7 47 49-96 48-94 (184)
78 PF03806 ABG_transport: AbgT p 34.9 6.3E+02 0.014 27.5 18.6 63 114-178 99-172 (502)
79 PRK03562 glutathione-regulated 33.1 7.1E+02 0.015 27.6 13.6 59 299-357 58-116 (621)
80 COG2978 AbgT Putative p-aminob 32.9 1.4E+02 0.0031 32.1 7.2 64 114-179 110-184 (516)
81 TIGR03136 malonate_biotin Na+- 32.1 1.7E+02 0.0037 30.7 7.4 83 307-396 110-194 (399)
82 KOG1650 Predicted K+/H+-antipo 32.0 8.3E+02 0.018 28.0 15.4 202 11-222 201-429 (769)
83 PF06166 DUF979: Protein of un 30.3 1.8E+02 0.0038 29.6 7.0 59 75-133 101-160 (308)
84 PF03977 OAD_beta: Na+-transpo 30.0 6.5E+02 0.014 26.2 23.4 270 47-351 2-294 (360)
85 PRK03659 glutathione-regulated 27.9 8.4E+02 0.018 26.8 17.6 105 101-212 266-374 (601)
86 TIGR00793 kdgT 2-keto-3-deoxyg 27.2 3.2E+02 0.007 27.9 8.3 61 303-363 201-263 (314)
87 PRK09903 putative transporter 26.7 6.4E+02 0.014 25.0 15.1 134 73-213 173-309 (314)
88 KOG3195 Uncharacterized membra 26.1 49 0.0011 31.4 2.2 42 73-129 46-87 (213)
89 COG1301 GltP Na+/H+-dicarboxyl 25.2 3.5E+02 0.0075 28.7 8.6 137 70-214 11-157 (415)
90 PF03977 OAD_beta: Na+-transpo 25.1 2.8E+02 0.0062 28.7 7.6 73 308-386 75-150 (360)
91 TIGR01625 YidE_YbjL_dupl AspT/ 24.1 5.4E+02 0.012 23.3 10.3 102 72-186 21-136 (154)
92 PRK02983 lysS lysyl-tRNA synth 22.7 9.6E+02 0.021 28.8 12.4 42 30-71 39-81 (1094)
93 PF06699 PIG-F: GPI biosynthes 20.9 3.2E+02 0.0069 25.8 6.6 79 74-152 65-158 (190)
No 1
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=100.00 E-value=2.6e-86 Score=673.71 Aligned_cols=358 Identities=43% Similarity=0.702 Sum_probs=322.4
Q ss_pred HHHHHHHHHHHH-Hhhcccc--cchhHHHHHHHHHHHHhhCCCC--CCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 048244 51 TALLVTGAFGLW-SEKTKLG--SMVSAALVSTLLGLAASNLGII--PYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQS 125 (413)
Q Consensus 51 a~l~~~~a~~~~-~~k~~~~--~~l~~~vl~~l~~~~lsn~gli--p~~s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~ 125 (413)
++++.++++++| |||++|+ |++|++++||+++++++|+|++ |.++|+||.+|+|++|++|||+|+++|+||++|+
T Consensus 1 a~l~~~~a~~~~le~~~~~~~f~~l~~~vl~~~~~~~lsnlgli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~ 80 (378)
T PF05684_consen 1 AVLLGIAALGFWLEQKTKWGFFKYLPGAVLCYLLGMLLSNLGLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRL 80 (378)
T ss_pred CHHHHHHHHHHHHhcchhhhhHhhcCHHHHHHHHHHHHHHCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHh
Confidence 468889999999 8999999 9999999999999999999999 8899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHhhhccccccccHHHHHHHhCCChHHHHHHHHHHHHHHHH
Q 048244 126 TGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAI 205 (413)
Q Consensus 126 ~~~~L~~F~~gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~~~~~~aa~~aaDnv~~~~ 205 (413)
+||++.+|++|++||++|++++|++++ +.++||.||++||++|||||||+||+||+|++++|++.+++++++||+++++
T Consensus 81 g~~~l~~F~~~~~g~viG~~va~~l~~-~~l~~~~wk~ag~l~gsyiGGs~N~~Av~~al~~~~~~~~a~~aaDnv~~~~ 159 (378)
T PF05684_consen 81 GGRLLLAFLIGAVGTVIGAVVAFLLFG-GFLGPEGWKIAGMLAGSYIGGSVNFVAVAEALGVSDSLFAAALAADNVVMAL 159 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccchHHHHHHHHHhcccCchhHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997 4479999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccc---CCCCCCCC----CC--Cccccc-cCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcc-----cCC
Q 048244 206 YFMILFTLASK---IPPEASPA----NG--TEVDKE-SNSEDKTPVLQTATALAISFVICKTATYLSNLFGI-----QGG 270 (413)
Q Consensus 206 ~~~~L~~l~~~---~~~~~~~~----~~--~~~~~~-~~~~~~i~~~~~~~~lava~~i~~~~~~la~~l~~-----~~~ 270 (413)
||+++++++++ ++++.+.. ++ ++.+++ ++++++.+..|++..+++++.++.+++.++++++. .+.
T Consensus 160 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~a~~v~~~s~~la~~l~~~~~~~~~~ 239 (378)
T PF05684_consen 160 WFAFLLALPPFARKFDRWTKADTSSIEALEEEIEAEEAEWARKPISQDLAFLLAVAFAVVALSHALAAWLPPLFAGISSS 239 (378)
T ss_pred HHHHHHHHhhhhHHhhhccCCCccccchhhhhhhhhhhccccCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999872 33333211 11 111111 11222334489999999999999999999998843 456
Q ss_pred chhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhcccchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 048244 271 SLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLF 350 (413)
Q Consensus 271 ~l~~itt~~vilat~~p~~~~~l~~~~~~lg~~ll~iffavIGa~~~l~~~i~~ap~l~l~~~i~l~iH~~~~l~~gkLf 350 (413)
.++++++.++.+++.+|+..++++++ +++|++++|+||++||+++|+.++++ +|.+++|+++++.+|++++++++|+|
T Consensus 240 ~~~il~~tt~~l~~~~~~~~~~l~g~-~~lg~~lly~ffa~IGa~a~i~~l~~-ap~~~l~~~i~l~iH~~l~l~~~kl~ 317 (378)
T PF05684_consen 240 TWLILTVTTLGLATSFPPFRKLLRGA-SELGTFLLYLFFAVIGASADISELLD-APSLFLFGFIILAIHLLLMLILGKLF 317 (378)
T ss_pred HHHHHHHHHHHHHHhccchhhcCCch-HHHHHHHHHHHHHHHccccCHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888999999999888887666 57999999999999999999999887 99999999999999999999999999
Q ss_pred ccchhHHHHHhhccCCCcchHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 048244 351 HFDLKLLLIASNANVGGPTTACGMATTKGWGSLVVPGILAGIFGISMATFLGLGFGTTVLKHL 413 (413)
Q Consensus 351 k~~l~~~~iAS~AnIGGpaTA~a~Aaa~~w~~Lv~pgvL~GvlGyaiGtylGi~v~~~ll~~~ 413 (413)
|+|++|++||||||||||+|||+||++|| |+|++||+++|++||++|||+|+.+++ ++|+|
T Consensus 318 k~~l~~~~vAS~AnIGGpaTA~a~A~a~~-~~Lv~pgvL~gvlGyaiGty~G~~va~-~l~~~ 378 (378)
T PF05684_consen 318 KIDLFELLVASNANIGGPATAPAVAAAKG-PSLVPPGVLMGVLGYAIGTYLGLAVAQ-LLKML 378 (378)
T ss_pred CCCHHHHHHHhhcccCCcchHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHH-HHHhC
Confidence 99999999999999999999999999999 999999999999999999999999999 57664
No 2
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=100.00 E-value=5.3e-78 Score=581.20 Aligned_cols=358 Identities=31% Similarity=0.505 Sum_probs=322.3
Q ss_pred ChHHHHHHHHHHHHHHHH-HhhcccccchhHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 048244 45 DHWGTWTALLVTGAFGLW-SEKTKLGSMVSAALVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIV 123 (413)
Q Consensus 45 ~~~~~~a~l~~~~a~~~~-~~k~~~~~~l~~~vl~~l~~~~lsn~glip~~s~~y~~v~~~llPlaI~LlLl~~Dlr~i~ 123 (413)
|-|..|+++..+++..+| |||.||+.++|+++++|+.+|.++|+|+.|.+||+||.+|+|++|++||+||+|||+||+.
T Consensus 4 ngf~~~~fl~~~aa~~i~lE~~~kwk~~Vpa~v~iy~gamff~t~Glfs~~S~~y~~v~n~llpamI~lmLlqcd~Rki~ 83 (384)
T COG5505 4 NGFVLWGFLAVWAAVSIGLEQRFKWKSAVPAAVIIYAGAMFFTTVGLFSVESPVYDTVWNYLLPAMIPLMLLQCDVRKIF 83 (384)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHhhcccccccCcHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 349999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHhhhccccccccHHHHHHHhCCChHHHHHHHHHHHHHH
Q 048244 124 QSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVIT 203 (413)
Q Consensus 124 k~~~~~L~~F~~gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~~~~~~aa~~aaDnv~~ 203 (413)
|+|||++..|+++++++++|++++|.+++ ..++ |.||..||+.|||+|||+||+||++++++|++.+++++++|++++
T Consensus 84 Klg~rll~ifli~sv~~vlGfIl~yp~~k-sf~g-d~Wka~gmi~gSytGGSaNmAAmqaaLeVP~~~fsatlaaDtv~y 161 (384)
T COG5505 84 KLGRRLLFIFLISSVGTVLGFILAYPLLK-SFIG-DLWKAGGMISGSYTGGSANMAAMQAALEVPGEYFSATLAADTVMY 161 (384)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHh-hhcc-hHHhhhhheeeeeeCCcchHHHHHhhhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999996 3344 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc---cCCCCCCCC--------CCCccccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcc--c--
Q 048244 204 AIYFMILFTLAS---KIPPEASPA--------NGTEVDKESNSEDKTPVLQTATALAISFVICKTATYLSNLFGI--Q-- 268 (413)
Q Consensus 204 ~~~~~~L~~l~~---~~~~~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~lava~~i~~~~~~la~~l~~--~-- 268 (413)
++|+++++.+++ |++++++.. ++...+|+++++|+++..|.+..+++++.+.+++..+++.++. +
T Consensus 162 Sll~~lli~iVpy~~kw~~~tkpdesKL~A~~~e~a~~e~ywKrkp~Sl~D~afl~Gislav~AVa~~Is~~l~~~s~gl 241 (384)
T COG5505 162 SLLFFLLISIVPYKWKWRHYTKPDESKLKADGNEGASAESYWKRKPISLKDIAFLAGISLAVVAVAMKISGYLKSISHGL 241 (384)
T ss_pred HHHHHHHHHHHHHHHHHhhccCccHHHHhhhhhhhhhhhhhhhcCCccHHHHHHHhhHHHHHHHHHHHHHhhcccccccc
Confidence 999999999975 333333311 1222345566777899999999999999999999999988773 1
Q ss_pred ----CCchhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhcccchHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 048244 269 ----GGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIIL 344 (413)
Q Consensus 269 ----~~~l~~itt~~vilat~~p~~~~~l~~~~~~lg~~ll~iffavIGa~~~l~~~i~~ap~l~l~~~i~l~iH~~~~l 344 (413)
+.....+++++..+..+.| ++|+++++ ++|++++|.|+++|+.++|++.+. ++|.+++++++++..|..+++
T Consensus 242 ~~~~gt~t~v~vsi~gLi~aLtP--f~~lpgs~-elgtv~lY~~v~vias~Ad~~~i~-taP~~i~~gf~il~~h~~v~f 317 (384)
T COG5505 242 LTGLGTQTLVLVSITGLIIALTP--FERLPGSQ-ELGTVLLYLFVVVIASPADLRLIV-TAPLIILFGFIILISHLAVSF 317 (384)
T ss_pred ccccceeeehHHHHHHHHHHhCc--cccCCchh-hhhHHHHHHHHHHhccchhHHHHH-hhhHHHHHHHHHHHHHHHHHH
Confidence 2233445556565656565 99999986 599999999999999999999964 599999999999999999999
Q ss_pred HHHHHhccchhHHHHHhhccCCCcchHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048244 345 GLGKLFHFDLKLLLIASNANVGGPTTACGMATTKGWGSLVVPGILAGIFGISMATFLGLGFGTTV 409 (413)
Q Consensus 345 ~~gkLfk~~l~~~~iAS~AnIGGpaTA~a~Aaa~~w~~Lv~pgvL~GvlGyaiGtylGi~v~~~l 409 (413)
.++|+||.|++|+.+||+||||||+|||+||.||| |+|++||++||++||.+|||.|+.+|+++
T Consensus 318 ~~~KlF~~dL~~i~~AslAniGG~~sAp~~A~A~n-r~lv~~gvlmg~lG~~iGn~fG~~~g~il 381 (384)
T COG5505 318 AAGKLFRVDLEEILLASLANIGGPTSAPAMAIAKN-RELVAPGVLMGTLGYLIGNYFGTFMGNIL 381 (384)
T ss_pred HHHHHHHhHHHHHHHHHHhccCCccchhHHHhhcC-chhcchHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999998 99999999999999999999999999963
No 3
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=99.95 E-value=4.3e-25 Score=224.97 Aligned_cols=349 Identities=17% Similarity=0.210 Sum_probs=289.6
Q ss_pred CCChHHHHHHHHHHHHHHHH-Hhhccc-ccchh-HHHHHHHHHHHHhhCCCCCCC-----ChHHH--HHHHHHHHHHHHH
Q 048244 43 PNDHWGTWTALLVTGAFGLW-SEKTKL-GSMVS-AALVSTLLGLAASNLGIIPYE-----AKAYA--VFLEFLLPLSIPL 112 (413)
Q Consensus 43 ~~~~~~~~a~l~~~~a~~~~-~~k~~~-~~~l~-~~vl~~l~~~~lsn~glip~~-----s~~y~--~v~~~llPlaI~L 112 (413)
|+|..+-+++++..+.+..| .+|.|+ ++|+| ++++|++.+..+.++|++|++ +..++ .+.++++...|.-
T Consensus 27 p~~m~g~~a~~~v~G~~l~~IG~riPi~k~yiGGg~il~~f~ps~Lv~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~G 106 (414)
T PF03390_consen 27 PTDMIGGFAVMMVLGFLLGEIGDRIPILKDYIGGGAILCIFVPSALVYFGLIPESVVEAVTNFMKGSNFLYFFIAALIVG 106 (414)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhhChhhhccCChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCChHHHHHHHHHHh
Confidence 68999999999999999655 999997 57698 679999999999999999985 23333 5778999999999
Q ss_pred HHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHhhhccccccccH--HHHHH----HhC
Q 048244 113 LLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINY--VAISE----ALG 186 (413)
Q Consensus 113 lLl~~Dlr~i~k~~~~~L~~F~~gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~--vAv~~----al~ 186 (413)
..|++|.|-++|..-|+++..+.|.++.++.+.+...+++ .+.++..-.++-+.+||+++- +.++| ++|
T Consensus 107 SILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G-----~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g 181 (414)
T PF03390_consen 107 SILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFG-----YSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAEALG 181 (414)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHhhhcCCCccccHhHHHHHHHHHhC
Confidence 9999999999999999999999999988777777777764 345678888999999999987 55555 677
Q ss_pred CCh-HHHHHHHHHHHHHHHHHHHHHHH----hcccCCCCCCCC----CCC-ccccccCCCCCCChHHHHHHHHHHHHHHH
Q 048244 187 VSP-SVLAAGVAADNVITAIYFMILFT----LASKIPPEASPA----NGT-EVDKESNSEDKTPVLQTATALAISFVICK 256 (413)
Q Consensus 187 ~~~-~~~aa~~aaDnv~~~~~~~~L~~----l~~~~~~~~~~~----~~~-~~~~~~~~~~~i~~~~~~~~lava~~i~~ 256 (413)
.++ +.++..+.+ ..+.++.-++... +.+|.|+++.+. +++ +.+++++++++++..+++..+.++.....
T Consensus 182 ~~~~~~~s~~ipa-~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~~~~g~Gllla~~~y~ 260 (414)
T PF03390_consen 182 QDAEEYFSQLIPA-LTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDFSDMGAGLLLACSFYI 260 (414)
T ss_pred CCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccccccccccCCCCCHHHHHHHHHHHHHHHH
Confidence 776 455555444 5555555555544 467888887743 112 22333445557888899999999999999
Q ss_pred HHHHHHHhhcccCCchhHHHHHHHHHHHhhhhhhhccc-cchhHHHHHHHHHHHHHHhcc-cchHHHHhh-hhHHHHHHH
Q 048244 257 TATYLSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLA-PAGDTLALVLMQVFFSVVGAS-GSIWNVINT-APSIFLFAL 333 (413)
Q Consensus 257 ~~~~la~~l~~~~~~l~~itt~~vilat~~p~~~~~l~-~~~~~lg~~ll~iffavIGa~-~~l~~~i~~-ap~l~l~~~ 333 (413)
++..+++.++.+...+.++.+..+-.....|+.+++-. ..++.+...+.+.+++.+|.. .|+.++++. .|.+++.++
T Consensus 261 ~G~ll~~~i~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~ 340 (414)
T PF03390_consen 261 LGVLLSKLIGIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVL 340 (414)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHH
Confidence 99999999888888888888888888999998876542 244678889999999999988 999998776 799999999
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHH---hhccCCCcchHHHHhhccCCCCchHHHHHHHHHHHHHH
Q 048244 334 VQVTVHLAIILGLGKLFHFDLKLLLIA---SNANVGGPTTACGMATTKGWGSLVVPGILAGIFGISMA 398 (413)
Q Consensus 334 i~l~iH~~~~l~~gkLfk~~l~~~~iA---S~AnIGGpaTA~a~Aaa~~w~~Lv~pgvL~GvlGyaiG 398 (413)
..+....+.-+.+||++|+++-|.+|+ |++|.||..+-+++.+|+| .+|+|.+++.-++|+++=
T Consensus 341 ~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~R-M~LmpFAQIstRiGGAi~ 407 (414)
T PF03390_consen 341 ATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAANR-MELMPFAQISTRIGGAIM 407 (414)
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehhhh-cccccHHHHHHhhhhHHH
Confidence 999999999999999999999999988 8999999999999999997 999999999999999873
No 4
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=99.92 E-value=1.3e-22 Score=202.18 Aligned_cols=356 Identities=16% Similarity=0.222 Sum_probs=282.6
Q ss_pred CCChHHHHHHHHHHHHH-HHHHhhcccc-cchh-HHHHHHHHHHHHhhCCCCCCC-----ChHHH--HHHHHHHHHHHHH
Q 048244 43 PNDHWGTWTALLVTGAF-GLWSEKTKLG-SMVS-AALVSTLLGLAASNLGIIPYE-----AKAYA--VFLEFLLPLSIPL 112 (413)
Q Consensus 43 ~~~~~~~~a~l~~~~a~-~~~~~k~~~~-~~l~-~~vl~~l~~~~lsn~glip~~-----s~~y~--~v~~~llPlaI~L 112 (413)
|.|..+-+++++.++.+ ++..||.|+. |++| +++++++.+..+..+|++|.+ +..|+ .+.+++++..|.-
T Consensus 44 P~~mlg~favm~vlG~llg~IG~riPI~nk~iGG~aIl~~fvaa~~v~~~llp~~~i~avt~fm~~snFL~fyIA~LI~G 123 (438)
T COG3493 44 PSDMLGGFAVMFVLGALLGEIGKRIPIVNKYIGGGAILALFVAAYLVFYNLLPSNVIKAVTNFMGKSNFLDFYIAALIVG 123 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcccCcchhhccCCchHHHHHHHHHHHHhccCCHHHHHHHHHHhcCCChHHHHHHHHHHh
Confidence 67899999999988888 6669999985 9998 889999999999999999985 45665 6889999999999
Q ss_pred HHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHhhhccccccccH--HHHHH----HhC
Q 048244 113 LLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINY--VAISE----ALG 186 (413)
Q Consensus 113 lLl~~Dlr~i~k~~~~~L~~F~~gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~--vAv~~----al~ 186 (413)
..|.+|.|-++|..-|+++..+.|.++..+.+.+...+++. +. -...--++-+.+||+..- +.++| .+|
T Consensus 124 SILgmnRklLIk~~~~~i~~il~g~v~A~~~g~lVG~~~G~---~~--~d~~m~~vlPIM~GG~GaGavPLS~iYs~itg 198 (438)
T COG3493 124 SILGMNRKLLIKSLKRYIPPILAGMVGAAAVGILVGLLFGL---SF--QDTMMYVVLPIMGGGMGAGAVPLSEIYSSITG 198 (438)
T ss_pred hhhhccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC---Ch--HHeeeeEEeeeccCCCCCCcccHHHHHHHHcC
Confidence 99999999999999999999999999988888887788752 21 124455777889998765 67777 457
Q ss_pred CChH-HHHHHHHHHHHHHHHHHHHHHH----hcccCCCCCCCCC-----C-CccccccCCCCCCChHHHHHHHHHHHHHH
Q 048244 187 VSPS-VLAAGVAADNVITAIYFMILFT----LASKIPPEASPAN-----G-TEVDKESNSEDKTPVLQTATALAISFVIC 255 (413)
Q Consensus 187 ~~~~-~~aa~~aaDnv~~~~~~~~L~~----l~~~~~~~~~~~~-----~-~~~~~~~~~~~~i~~~~~~~~lava~~i~ 255 (413)
.|++ .++..+.+ ..+.+++-++..+ +.+|.|.++.+.+ + ++.+||.+++.+++.++.+..+..+....
T Consensus 199 ~s~~~~~s~lipa-l~igNvfAIi~aall~~iG~K~psltGnG~Lv~~~~~~~~~ee~~~~~k~d~~~~g~G~llA~~lf 277 (438)
T COG3493 199 GSQEEYFSQLIPA-LTIGNVFAIICAALLNKIGKKKPSLTGNGELVRSKSKEATEEELEKEGKLDLKLMGAGMLLACTLF 277 (438)
T ss_pred CCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcccCCCccCCceEEeccccchhhhhhhhccCccHHHHHHHHHHHHHHH
Confidence 7764 55554444 5555655555544 4567888877431 1 11222223334778889999999999889
Q ss_pred HHHHHHHHhhcccCC-chhHHHHHHHHHHHhhhhhhhcccc-chhHHHHHHHHHHHHHHhcc-cchHHHHhh-hhHHHHH
Q 048244 256 KTATYLSNLFGIQGG-SLPGVTAIVVILATLLPKQFSYLAP-AGDTLALVLMQVFFSVVGAS-GSIWNVINT-APSIFLF 331 (413)
Q Consensus 256 ~~~~~la~~l~~~~~-~l~~itt~~vilat~~p~~~~~l~~-~~~~lg~~ll~iffavIGa~-~~l~~~i~~-ap~l~l~ 331 (413)
.++..+.++++.++. .+.++.+..+-.+...|+.+++-+. -++.+.+-+.|.+++.+|.. +|+.++... ++.+++.
T Consensus 278 ~~g~il~kf~~~P~~va~MIil~a~lk~~nlvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~vii 357 (438)
T COG3493 278 MAGGILGKFIGLPGPVAFMIILVAILKAANLVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNVII 357 (438)
T ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccHHHHHHHhchhHHHH
Confidence 999999998744332 3666666667788888877654322 23578999999999999977 999998776 6899999
Q ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHH---hhccCCCcchHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 048244 332 ALVQVTVHLAIILGLGKLFHFDLKLLLIA---SNANVGGPTTACGMATTKGWGSLVVPGILAGIFGISMATFLGLGF 405 (413)
Q Consensus 332 ~~i~l~iH~~~~l~~gkLfk~~l~~~~iA---S~AnIGGpaTA~a~Aaa~~w~~Lv~pgvL~GvlGyaiGtylGi~v 405 (413)
++.++......-+..+|++++++-|.+|. |+||.||..+.++++++.| .+|+|.+++..++|.++=--++..+
T Consensus 358 ~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDvaVLsAa~R-M~LmpFAQiSsRLGGai~li~~~ll 433 (438)
T COG3493 358 ALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVAVLSAADR-MELMPFAQISSRLGGAITLIIASLL 433 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchHHhhhcch-hccccHHHHHhhcCchhhhHHHHHH
Confidence 99999999999999999999999998886 7999999999999999997 9999999999999999865555443
No 5
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=99.82 E-value=4.1e-18 Score=170.99 Aligned_cols=305 Identities=16% Similarity=0.138 Sum_probs=228.6
Q ss_pred HhhCCCCCCC-----ChHHH--HHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 048244 85 ASNLGIIPYE-----AKAYA--VFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLG 157 (413)
Q Consensus 85 lsn~glip~~-----s~~y~--~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~~F~~gsvgtviG~~va~~l~~~~~lg 157 (413)
+.++|++|++ +..++ .+.++++...|.-..|++|.|-++|..-|+++..++|.++.++.+.....+++
T Consensus 3 lv~~~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G----- 77 (347)
T TIGR00783 3 LVFYNILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFG----- 77 (347)
T ss_pred EEEeCCCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----
Confidence 4578899974 23333 57789999999999999999999999999999999999988888877777764
Q ss_pred cchHHHHHHhhhccccccccH--HHHHH----HhCCChH-HHHHHHHHHHHHHHHHHHHHHH----hcccCCCCCCCCC-
Q 048244 158 TDSWKIASAFMGSYIGGSINY--VAISE----ALGVSPS-VLAAGVAADNVITAIYFMILFT----LASKIPPEASPAN- 225 (413)
Q Consensus 158 ~~~wkiag~l~gsyiGGs~N~--vAv~~----al~~~~~-~~aa~~aaDnv~~~~~~~~L~~----l~~~~~~~~~~~~- 225 (413)
-+.+...-.++-+.+||+++- +++++ .+|.+++ .++..+.+ ..+.++.-++... +.+|+|+++.+.+
T Consensus 78 ~~~~~~~~~i~lPIm~GG~GaGavPLS~~Y~~~~g~~~~~~~s~~ip~-~~igni~AIi~agll~~lG~~~p~ltG~G~L 156 (347)
T TIGR00783 78 LGFDHSLMYIVMPIMAGGVGAGIVPLSIIYSAITGRSSEEIFSQLIPA-VIIGNIFAIICAGLLSRIGKKRPKLNGHGEL 156 (347)
T ss_pred CCHhHhhheeeehhcCCCcccchhhHHHHHHHHhCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCCcCCCceE
Confidence 233456777888999999887 56665 5677764 55555444 5555555555544 4567888876331
Q ss_pred --C--Ccc-ccccCC-CCCCChHHHHHHHHHHHHHHHHHHHHHHhhc-ccCCchhHHHHHHHHHHHhhhhhhhcc-ccch
Q 048244 226 --G--TEV-DKESNS-EDKTPVLQTATALAISFVICKTATYLSNLFG-IQGGSLPGVTAIVVILATLLPKQFSYL-APAG 297 (413)
Q Consensus 226 --~--~~~-~~~~~~-~~~i~~~~~~~~lava~~i~~~~~~la~~l~-~~~~~l~~itt~~vilat~~p~~~~~l-~~~~ 297 (413)
. ++. ++++++ +.+++..+++..+.++.....++..++ .++ .+...+.++....+-.....|+..++- +..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~g~Gl~~a~~~y~~g~l~~-~~~~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~ 235 (347)
T TIGR00783 157 VRSEKREDAEKAKEITEIKIDVKLMGSGVLFAVALFMAGGLLK-SFPGIPAYAFMILIAAALKAFGLVPKEIEEGAKMLS 235 (347)
T ss_pred eecCCcchhhhccccccCCCCHHHHHHHHHHHHHHHHHHHHHH-hcccCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1 111 111111 125677888988888888888887775 443 244445555555555666677665432 2233
Q ss_pred hHHHHHHHHHHHHHHhcc-cchHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH---hhccCCCcchHH
Q 048244 298 DTLALVLMQVFFSVVGAS-GSIWNVINTA-PSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIA---SNANVGGPTTAC 372 (413)
Q Consensus 298 ~~lg~~ll~iffavIGa~-~~l~~~i~~a-p~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~iA---S~AnIGGpaTA~ 372 (413)
+.+-..+++..++.+|.. .|..++++.- |.+++.++..+....+..+++||++|+++-|.+|+ |++|.||..+.+
T Consensus 236 ~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~lvGKllG~YPiE~aItagLC~~~~GGtGDva 315 (347)
T TIGR00783 236 QFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVA 315 (347)
T ss_pred HHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcee
Confidence 456667778888989976 8999987764 99999999999999999999999999999999987 899999999999
Q ss_pred HHhhccCCCCchHHHHHHHHHHHHH
Q 048244 373 GMATTKGWGSLVVPGILAGIFGISM 397 (413)
Q Consensus 373 a~Aaa~~w~~Lv~pgvL~GvlGyai 397 (413)
++.+++| .+|+|.+++..++|+++
T Consensus 316 vLsAa~R-M~LmpfAQIstRiGGAi 339 (347)
T TIGR00783 316 VLSASNR-MNLIPFAQISTRLGGAI 339 (347)
T ss_pred eeehhhh-cccccHHHHHHHhhhHH
Confidence 9999997 99999999999999976
No 6
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=98.60 E-value=0.00016 Score=74.44 Aligned_cols=304 Identities=13% Similarity=0.163 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHHH-Hhhcccc--cchhHHHHHHHHHHHH----hhCCCCCC--CChHHHHHHHHHHHHHHHHHHHHhhH
Q 048244 49 TWTALLVTGAFGLW-SEKTKLG--SMVSAALVSTLLGLAA----SNLGIIPY--EAKAYAVFLEFLLPLSIPLLLFRADL 119 (413)
Q Consensus 49 ~~a~l~~~~a~~~~-~~k~~~~--~~l~~~vl~~l~~~~l----sn~glip~--~s~~y~~v~~~llPlaI~LlLl~~Dl 119 (413)
.++.....--++.| .+|.|+- -++|.+++.=++++++ .+.+.++- +...++. ++=.--.-+-++.++
T Consensus 8 tl~la~ilLliG~~Lr~ki~~lqk~~IPasvIgGli~~il~~~l~~~~~~~~~f~~~l~~~----lm~~fF~~igL~~~~ 83 (368)
T PF03616_consen 8 TLALASILLLIGKFLRAKIPFLQKLFIPASVIGGLIFAILPLILGGFGGISISFDTSLQDF----LMIIFFTTIGLGASL 83 (368)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHccCCchHHHHHHHHHHHHHHHhcCceEEEechhHHHH----HHHHHHHHHhhccch
Confidence 34444445556777 7777874 3466666555554443 44555443 3333332 222222234568898
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHhhh--ccccccccHHHHHHHh----CCChH-HH
Q 048244 120 RRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMG--SYIGGSINYVAISEAL----GVSPS-VL 192 (413)
Q Consensus 120 r~i~k~~~~~L~~F~~gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~g--syiGGs~N~vAv~~al----~~~~~-~~ 192 (413)
|++.|.+++...-...+.+-..+=..++..+-+.-.+.| ..|.++| ++.||=-+-.|.++.+ |.++. .+
T Consensus 84 ~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p----~~Gll~Gsi~f~GGhGTAaa~g~~fe~~~G~~~a~~v 159 (368)
T PF03616_consen 84 KLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDP----LFGLLAGSIGFTGGHGTAAAFGPTFEELYGWEGATSV 159 (368)
T ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc----hHHHHhccccccCCccHHHHHHHHHHHhcChhhhHHH
Confidence 888776655554444444333333333332211001223 3566655 7999988888888654 44432 22
Q ss_pred HHHHHHHHHHHHHHHH--HHHHhcccCCCCCCCCCCC------ccccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q 048244 193 AAGVAADNVITAIYFM--ILFTLASKIPPEASPANGT------EVDKESNSEDKTPVLQTATALAISFVICKTATYLSNL 264 (413)
Q Consensus 193 aa~~aaDnv~~~~~~~--~L~~l~~~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~lava~~i~~~~~~la~~ 264 (413)
+.+.|.==++...-.. +.-.+.||.+...++++++ +.+++++++++++..+....+++=..++.++..++++
T Consensus 160 g~a~AT~Glv~G~liGgpi~~~lirk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~i~~l~~i~i~~~~G~~i~~~ 239 (368)
T PF03616_consen 160 GMAAATFGLVVGGLIGGPIANWLIRKGKLKPKKEPDELKEYLRKGEERPSAGRPITSSSLIEHLALILIAIGLGYIISAL 239 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211111111110 1111234433211111111 1111222233555555555555555566677788777
Q ss_pred hcccCCchhHHHHHHHHHHHhhh---hhh--hccccc-hhHHHHHHHHHHHHHHhcccchHHHHhhhhHHHHHHHHH-HH
Q 048244 265 FGIQGGSLPGVTAIVVILATLLP---KQF--SYLAPA-GDTLALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQ-VT 337 (413)
Q Consensus 265 l~~~~~~l~~itt~~vilat~~p---~~~--~~l~~~-~~~lg~~ll~iffavIGa~~~l~~~i~~ap~l~l~~~i~-l~ 337 (413)
+...+..+|. ..+..+.+-.+. ++. .++... -+.++...+.+|.+.-=++-++.++.+-+..+++...++ +.
T Consensus 240 l~~~~~~lP~-f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~ 318 (368)
T PF03616_consen 240 LKKIGLTLPL-FVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTIL 318 (368)
T ss_pred HHHcCcCCch-HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 6544444443 222233322222 122 223222 257888887777655547889999876654444443444 33
Q ss_pred HHHHHHHHHHHHhccchhHHHHHh
Q 048244 338 VHLAIILGLGKLFHFDLKLLLIAS 361 (413)
Q Consensus 338 iH~~~~l~~gkLfk~~l~~~~iAS 361 (413)
.-....+..-|+++=|+|...+++
T Consensus 319 ~~~f~~fv~fr~~gkdydaavm~~ 342 (368)
T PF03616_consen 319 MVLFAYFVTFRVMGKDYDAAVMSA 342 (368)
T ss_pred HHHHHHHHhhhhhCCChhHHHHhh
Confidence 444455677799999997777654
No 7
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=98.13 E-value=0.014 Score=60.74 Aligned_cols=305 Identities=18% Similarity=0.145 Sum_probs=151.9
Q ss_pred ChHHHHHHHHHHHHHHHH-Hhhcccc--cchhHHHHHHHHHH----HHhhCCC--CCCCChHHHHHHHHHHHHHHHHHHH
Q 048244 45 DHWGTWTALLVTGAFGLW-SEKTKLG--SMVSAALVSTLLGL----AASNLGI--IPYEAKAYAVFLEFLLPLSIPLLLF 115 (413)
Q Consensus 45 ~~~~~~a~l~~~~a~~~~-~~k~~~~--~~l~~~vl~~l~~~----~lsn~gl--ip~~s~~y~~v~~~llPlaI~LlLl 115 (413)
|.+...++....-.++.| .+|.|+- -.+|.+|+.=++++ ++-+.+. ++.+++..+ .++-.--.-+-+
T Consensus 4 ~~~~t~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~~~~~~~~~~fd~~l~~----~lm~~fFatigL 79 (398)
T TIGR00210 4 DIYATLVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLIYKIFGTEVNFDFSLRD----PLMLIFFTTIGL 79 (398)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhccEEEEcChhHHH----HHHHHHHHHhhh
Confidence 344445555556666777 7777763 33566655544432 2223222 334444443 332222223345
Q ss_pred HhhHHHHHHhhhHHHHHHHHHHHHHH-----HHHHHHHHHhcccccCcchHHHHHHhh--hccccccccHHHHHHHh---
Q 048244 116 RADLRRIVQSTGILLLAFLLGSVATT-----VGTLVAFLLVPMRSLGTDSWKIASAFM--GSYIGGSINYVAISEAL--- 185 (413)
Q Consensus 116 ~~Dlr~i~k~~~~~L~~F~~gsvgtv-----iG~~va~~l~~~~~lg~~~wkiag~l~--gsyiGGs~N~vAv~~al--- 185 (413)
+.++|+++|. +|.+..|+.-+.... +|..++. +++ +.| .+|+++ -|..||=-.-.|+++.+
T Consensus 80 ga~~~~l~~g-g~~l~~~~~~~~~l~~~Qn~vGv~la~-~~g---l~P----~~Gll~gsi~~~GGHGTAaA~g~~f~e~ 150 (398)
T TIGR00210 80 SANFKSLLKG-GKPLLIFLATAVGFLVIQNAVGIGMAS-LLG---QAP----LMGLLAGSITLSGGHGTGAAWSPVFYDN 150 (398)
T ss_pred cCChHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC---CCh----HHHHHhhCccCCCCCcHHHHHHHHHHHH
Confidence 7899997764 555555554443332 3333331 222 233 678875 68999998888888865
Q ss_pred -CCChH-HHHHHHHHHHHHHHHHHHHH--HHhcccCCCCCC-CCCCCcc--ccccCC-CCCCChHHHHHHHHHHHHHHHH
Q 048244 186 -GVSPS-VLAAGVAADNVITAIYFMIL--FTLASKIPPEAS-PANGTEV--DKESNS-EDKTPVLQTATALAISFVICKT 257 (413)
Q Consensus 186 -~~~~~-~~aa~~aaDnv~~~~~~~~L--~~l~~~~~~~~~-~~~~~~~--~~~~~~-~~~i~~~~~~~~lava~~i~~~ 257 (413)
|.++. .++.+.|.==++...-...- -++.||.+...+ +.++++. +.++++ +++.+..+....+++-...+.+
T Consensus 151 ~G~~~a~~lgla~AT~GLv~g~liGgpi~~~lirk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~i~iai~i 230 (398)
T TIGR00210 151 YGFRNATEIAIACATFGLVFGGIIGGPVAKFLIIRNKLEPNCENDTKDVTIGFERPQDNRQITYNSLIETIALIAVCLLV 230 (398)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccccccccccccccccCHHHHHHHHHHHHHHHHH
Confidence 45542 33332222111111111111 011233322111 1111111 111111 2234444444444444555666
Q ss_pred HHHHHHhhcccCCchh---HHHHHHHHHHHhhhhhhh--cc-ccchhHHHHHHHHHHHHHHhcccchHHHHhhhhHHHHH
Q 048244 258 ATYLSNLFGIQGGSLP---GVTAIVVILATLLPKQFS--YL-APAGDTLALVLMQVFFSVVGASGSIWNVINTAPSIFLF 331 (413)
Q Consensus 258 ~~~la~~l~~~~~~l~---~itt~~vilat~~p~~~~--~l-~~~~~~lg~~ll~iffavIGa~~~l~~~i~~ap~l~l~ 331 (413)
+..+.+.+...+..+| ......+++=...+ +.+ ++ ...-+.++...+-+|.+.-=++-+++++.+.+..+++.
T Consensus 231 G~~i~~~l~~~~~~lP~fv~am~~giiirni~~-~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Pllii 309 (398)
T TIGR00210 231 GYELNDLVAKTALMLPTFVWCLFVGVILRNPLS-FKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGPIALI 309 (398)
T ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHH-HhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 7777766543223333 22233333333222 221 22 12336788888888877665889999987777777777
Q ss_pred HHHHHHHHHHHH-HHHHHHhccchhHHHHHhhcc
Q 048244 332 ALVQVTVHLAII-LGLGKLFHFDLKLLLIASNAN 364 (413)
Q Consensus 332 ~~i~l~iH~~~~-l~~gkLfk~~l~~~~iAS~An 364 (413)
...++....++. +..-|.++=| .|-+|=|-..
T Consensus 310 l~~q~i~~~l~~~fv~fr~mg~~-ydaaV~~ag~ 342 (398)
T TIGR00210 310 LLVQVMFMALYAIFVTFRLMGKD-YDAAVLCAGH 342 (398)
T ss_pred HHHHHHHHHHHHHHHhHHhccch-HHHHHHhccc
Confidence 777777777544 5666889888 4555533333
No 8
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=98.04 E-value=0.00025 Score=73.65 Aligned_cols=169 Identities=17% Similarity=0.278 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-cCCchhHHH---HHHHHHHHhhhhhhh-ccccchhHHHHHHHHHHHHHHhcccc
Q 048244 243 QTATALAISFVICKTATYLSNLFGI-QGGSLPGVT---AIVVILATLLPKQFS-YLAPAGDTLALVLMQVFFSVVGASGS 317 (413)
Q Consensus 243 ~~~~~lava~~i~~~~~~la~~l~~-~~~~l~~it---t~~vilat~~p~~~~-~l~~~~~~lg~~ll~iffavIGa~~~ 317 (413)
|.-..++++.....+|+++-+..+. +...+|.-- .+..++....|.... ..+-. +.+-..+|.+||+++|..++
T Consensus 4 ~~~~t~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~~~~~~~~~~fd-~~l~~~lm~~fFatigLga~ 82 (398)
T TIGR00210 4 DIYATLVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLIYKIFGTEVNFD-FSLRDPLMLIFFTTIGLSAN 82 (398)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhccEEEEcC-hhHHHHHHHHHHHHhhhcCC
Confidence 3445666777777888888776653 334444311 111011222233221 12222 34667889999999999999
Q ss_pred hHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHhccchhHHHH-HhhccCCCcchHHHHhhcc----CCCCchHHHHH
Q 048244 318 IWNVINTAPSIFLFALV---QVTVHLAIILGLGKLFHFDLKLLLI-ASNANVGGPTTACGMATTK----GWGSLVVPGIL 389 (413)
Q Consensus 318 l~~~i~~ap~l~l~~~i---~l~iH~~~~l~~gkLfk~~l~~~~i-AS~AnIGGpaTA~a~Aaa~----~w~~Lv~pgvL 389 (413)
++.+-+.++.++.+..+ .....-++-..+++++++|+..=+. .|..=.||..||++++..+ ||++-...|+-
T Consensus 83 ~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la~~~gl~P~~Gll~gsi~~~GGHGTAaA~g~~f~e~~G~~~a~~lgla 162 (398)
T TIGR00210 83 FKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMASLLGQAPLMGLLAGSITLSGGHGTGAAWSPVFYDNYGFRNATEIAIA 162 (398)
T ss_pred hHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCccCCCCCcHHHHHHHHHHHHcCchhHHHHHHH
Confidence 99865545555444433 6666666777788999999888777 5999999999999998754 89999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 048244 390 AGIFGISMATFLGLGFGTTVLKH 412 (413)
Q Consensus 390 ~GvlGyaiGtylGi~v~~~ll~~ 412 (413)
++++|...|.-+|.-+++++.||
T Consensus 163 ~AT~GLv~g~liGgpi~~~lirk 185 (398)
T TIGR00210 163 CATFGLVFGGIIGGPVAKFLIIR 185 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999988775
No 9
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.95 E-value=0.0005 Score=70.73 Aligned_cols=168 Identities=23% Similarity=0.349 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-cCCchhHHH---HHHHHHHHhhhhhhhc--cccchhHHHHHHHHHHHHHHhccc
Q 048244 243 QTATALAISFVICKTATYLSNLFGI-QGGSLPGVT---AIVVILATLLPKQFSY--LAPAGDTLALVLMQVFFSVVGASG 316 (413)
Q Consensus 243 ~~~~~lava~~i~~~~~~la~~l~~-~~~~l~~it---t~~vilat~~p~~~~~--l~~~~~~lg~~ll~iffavIGa~~ 316 (413)
|.-..++++.....+|+++-+..+. +.+.+|.-- .+..++.+ ....... ++-. ..+-..+|.+||+++|..+
T Consensus 4 ~~~~tl~la~ilLliG~~Lr~ki~~lqk~~IPasvIgGli~~il~~-~l~~~~~~~~~f~-~~l~~~lm~~fF~~igL~~ 81 (368)
T PF03616_consen 4 DALQTLALASILLLIGKFLRAKIPFLQKLFIPASVIGGLIFAILPL-ILGGFGGISISFD-TSLQDFLMIIFFTTIGLGA 81 (368)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHccCCchHHHHHHHHHHHH-HHHhcCceEEEec-hhHHHHHHHHHHHHHhhcc
Confidence 4445666667777778887766554 233333311 11111111 1122222 2222 2477889999999999999
Q ss_pred chHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH-hhccCCCcchHHHHhh----ccCCCCchHHHH
Q 048244 317 SIWNVINTAP---SIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIA-SNANVGGPTTACGMAT----TKGWGSLVVPGI 388 (413)
Q Consensus 317 ~l~~~i~~ap---~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~iA-S~AnIGGpaTA~a~Aa----a~~w~~Lv~pgv 388 (413)
+.+..-+... .+..++.......-++=+.++++++.|+..=.++ |..=.||+.||++++. .+||++-...|+
T Consensus 82 ~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGTAaa~g~~fe~~~G~~~a~~vg~ 161 (368)
T PF03616_consen 82 SLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGTAAAFGPTFEELYGWEGATSVGM 161 (368)
T ss_pred chhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccHHHHHHHHHHHhcChhhhHHHHH
Confidence 9888644333 3444444456666667778899999997766555 8899999999999985 459999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 048244 389 LAGIFGISMATFLGLGFGTTVLKH 412 (413)
Q Consensus 389 L~GvlGyaiGtylGi~v~~~ll~~ 412 (413)
-.+++|-..|..+|.-+++++.||
T Consensus 162 a~AT~Glv~G~liGgpi~~~lirk 185 (368)
T PF03616_consen 162 AAATFGLVVGGLIGGPIANWLIRK 185 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999998886
No 10
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.82 E-value=0.021 Score=58.85 Aligned_cols=292 Identities=18% Similarity=0.219 Sum_probs=151.2
Q ss_pred HHHHHHH-Hhhccccc-------chhHHHHHHHHHHHHhhCCC-CCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Q 048244 56 TGAFGLW-SEKTKLGS-------MVSAALVSTLLGLAASNLGI-IPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQST 126 (413)
Q Consensus 56 ~~a~~~~-~~k~~~~~-------~l~~~vl~~l~~~~lsn~gl-ip~~s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~ 126 (413)
.-.+|-+ .||.|+-+ .+++.+..++...+....++ +..+.+..|. ++-.--.-+=+++|+++.+|-|
T Consensus 17 llllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~~~~fd~~l~~~----fmliFFttiglsa~~~~lkkgG 92 (404)
T COG0786 17 LLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGVSLNFDTSLQDV----FMLIFFATIGLSASFKLLKKGG 92 (404)
T ss_pred HHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceEEEeCCcccccH----HHHHHHHHhccccchhHHHhcC
Confidence 3344555 77777742 24555556655555544433 1123333331 1111112233689999887665
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHhhh--ccccccccHHHHHHHhCCChHHHHHHHHHHHHHHH
Q 048244 127 GILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMG--SYIGGSINYVAISEALGVSPSVLAAGVAADNVITA 204 (413)
Q Consensus 127 ~~~L~~F~~gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~g--syiGGs~N~vAv~~al~~~~~~~aa~~aaDnv~~~ 204 (413)
+++..-...+..=.+..=+++--+.+ .++-|- ..|+++| |..||=-|-+|.++.++-.. +-.+.|.-+.+
T Consensus 93 k~l~if~~~a~~l~~~Qn~igi~la~--~lgidp--l~gllagsIsl~GGHGtaAA~~~~f~~~G----~~~A~~va~A~ 164 (404)
T COG0786 93 KKLAIFLATAAGLAVLQNFIGIGLAK--LLGLDP--LIGLLAGSISLVGGHGTAAAWGPTFEDLG----AEGATEVAMAS 164 (404)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HcCccH--HHHHHhcceeecCCCchHHHHHHHHHhcC----CcchHHHHHHH
Confidence 55444444444433444444444432 123232 5788886 67899999999998664331 11111111222
Q ss_pred HHHHHHHHh------c----ccC--CCCCCCCC-CCcccc---ccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 048244 205 IYFMILFTL------A----SKI--PPEASPAN-GTEVDK---ESNSEDKTPVLQTATALAISFVICKTATYLSNLFGIQ 268 (413)
Q Consensus 205 ~~~~~L~~l------~----~~~--~~~~~~~~-~~~~~~---~~~~~~~i~~~~~~~~lava~~i~~~~~~la~~l~~~ 268 (413)
.-+...+.. + +|. ++.+.+.+ ++..+. .+.++++++...+...+++-.....++..+.++++..
T Consensus 165 ATfGlv~GgliGgpva~~li~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~i~i~~~vG~~i~~~l~~~ 244 (404)
T COG0786 165 ATFGLVAGGLIGGPVARWLIKKNKLKPDPTKDPDDDLVDVAFEGPKSTRLITAEPLIETLAIIAICLAVGKIINQLLKSL 244 (404)
T ss_pred HHHHHHHhHhcCcHHHHHHHHhcCCCCCCCCCchhhcchhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 222222211 1 122 11111111 111111 1222334444444444555555667788888888765
Q ss_pred CCchhH---HHHHHHHHHHhhhhhhhccc---cchhHHHHHHHHHHHHHHhcccchHHHHhhh-hHHHHHHHHHHHHHHH
Q 048244 269 GGSLPG---VTAIVVILATLLPKQFSYLA---PAGDTLALVLMQVFFSVVGASGSIWNVINTA-PSIFLFALVQVTVHLA 341 (413)
Q Consensus 269 ~~~l~~---itt~~vilat~~p~~~~~l~---~~~~~lg~~ll~iffavIGa~~~l~~~i~~a-p~l~l~~~i~l~iH~~ 341 (413)
+..+|. .....+++-.... ..++-+ ...+.+|+.-+-+|.+.-=+|-.+.++.+-+ |.+.++..-.+...+.
T Consensus 245 ~~~lP~fv~~lfvgiIvrni~~-~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~lpl~viL~vQ~i~m~lf 323 (404)
T COG0786 245 GLALPLFVMCLFVGVILRNILD-LLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLALPLLVILAVQTIVMALF 323 (404)
T ss_pred cccccHHHHHHHHHHHHHhHHH-HhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 555544 4445555544442 222211 2236788888888877655778888875444 5555555444555555
Q ss_pred HHHHHHHHhccchhHHHHH
Q 048244 342 IILGLGKLFHFDLKLLLIA 360 (413)
Q Consensus 342 ~~l~~gkLfk~~l~~~~iA 360 (413)
..+..-|+++=|+++..++
T Consensus 324 a~fvtfr~mG~~YdAaV~~ 342 (404)
T COG0786 324 AIFVTFRLMGKNYDAAVLA 342 (404)
T ss_pred HHHHHHHHhCcchhHHHHh
Confidence 6677889999999998885
No 11
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=97.80 E-value=0.0024 Score=64.13 Aligned_cols=158 Identities=19% Similarity=0.140 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHhhcc-cccchhHHHHHHHHHHHHhh-CCCCCC-CChHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHH
Q 048244 53 LLVTGAFGLWSEKTK-LGSMVSAALVSTLLGLAASN-LGIIPY-EAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGIL 129 (413)
Q Consensus 53 l~~~~a~~~~~~k~~-~~~~l~~~vl~~l~~~~lsn-~glip~-~s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~ 129 (413)
.+.++.++.+.++.+ ....+++.++++++|++++| .--.|. -.|--++..+++++..|.++=++.++.++.+.|.+.
T Consensus 6 ~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~~ 85 (305)
T PF03601_consen 6 CFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGWKG 85 (305)
T ss_pred HHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCccH
Confidence 344555566666655 45789999999999999999 333333 235556777899999999999999999999999976
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhcccccCcchHHHHHHhhhccccccccHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Q 048244 130 LLAFLLGSVATTVGTL-VAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFM 208 (413)
Q Consensus 130 L~~F~~gsvgtviG~~-va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~~~~~~aa~~aaDnv~~~~~~~ 208 (413)
+..-.+....+..-+. ++...++ +.++.- .=.=+|+=|-|..=-.|++...+.+||..+++++.=+++..+-+.
T Consensus 86 ~~~~~~~v~~~~~~~~~lg~r~~~---l~~~~~--~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~ 160 (305)
T PF03601_consen 86 LLIIIIVVILTFLLTYWLGRRLFG---LDRKLA--ILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMF 160 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC---CCHHHH--HHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHH
Confidence 5554444443333222 2224443 223221 122356788888888999999999999888888886777777766
Q ss_pred HHHHhcc
Q 048244 209 ILFTLAS 215 (413)
Q Consensus 209 ~L~~l~~ 215 (413)
++-.+.+
T Consensus 161 ~~P~l~~ 167 (305)
T PF03601_consen 161 LYPLLGH 167 (305)
T ss_pred HHHHHHH
Confidence 6655554
No 12
>COG2855 Predicted membrane protein [Function unknown]
Probab=97.76 E-value=0.0085 Score=60.68 Aligned_cols=264 Identities=19% Similarity=0.170 Sum_probs=162.2
Q ss_pred HHHHHHHHHHhhcccccc--hhHHHHHHHHHHHHhhCCCCCCC-ChHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHH
Q 048244 54 LVTGAFGLWSEKTKLGSM--VSAALVSTLLGLAASNLGIIPYE-AKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILL 130 (413)
Q Consensus 54 ~~~~a~~~~~~k~~~~~~--l~~~vl~~l~~~~lsn~glip~~-s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L 130 (413)
..++.+.++..|..+... +|+.++++++|+++.++.-.|.+ ++--++-..++++..|.|+=++.++.++...|.+.+
T Consensus 17 ~~ia~~a~~l~~~~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v 96 (334)
T COG2855 17 ALIAGLAMLLGAFFFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSGV 96 (334)
T ss_pred HHHHHHHHHHhchHHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccHH
Confidence 334555666788777544 66999999999999977766643 455568899999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCcchHHHH-HHhhhccccccccHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Q 048244 131 LAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIA-SAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFMI 209 (413)
Q Consensus 131 ~~F~~gsvgtviG~~va~~l~~~~~lg~~~wkia-g~l~gsyiGGs~N~vAv~~al~~~~~~~aa~~aaDnv~~~~~~~~ 209 (413)
..-.....++.+-+.....++++ . ||.+ =.=+|+=|=|..--+|++...+-+|+..+.+++.=+++..+-+..
T Consensus 97 ~~~~~~l~~t~~~~~~lg~~lgl---d---~~~a~Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~ll 170 (334)
T COG2855 97 LIIAITLSSTFLFAYFLGKLLGL---D---KKLALLIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLL 170 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC---C---HHHHHHHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHH
Confidence 77777666666655544445532 1 3322 123467777777788888899999999999999888888877766
Q ss_pred HHHhcccC--CCCCC--C--CCCCcccc-----ccCCCC--CC-ChHHHHHHHHHHHHHHHHHHHHHHhhcc---cC---
Q 048244 210 LFTLASKI--PPEAS--P--ANGTEVDK-----ESNSED--KT-PVLQTATALAISFVICKTATYLSNLFGI---QG--- 269 (413)
Q Consensus 210 L~~l~~~~--~~~~~--~--~~~~~~~~-----~~~~~~--~i-~~~~~~~~lava~~i~~~~~~la~~l~~---~~--- 269 (413)
.-.+.+.. +++.- . ...+|... +..+++ +. +..-+.-.+.++-....++-...+.-.. .+
T Consensus 171 yP~l~~~l~l~~~~~GifaG~TvHeVaqVvaAg~~~~~~a~~~A~ivKl~RV~mLaPv~l~ls~~~~~~~~~~~~~~~~~ 250 (334)
T COG2855 171 YPLLYPLLGLSPEQFGIFAGSTVHEVAQVVAAGGAIGPEAANTATIVKLIRVLMLAPVLLILSLILRRQSGAGSGSKGLK 250 (334)
T ss_pred HHHHHHHhCCCcchheeeechhHHHHHHHHHhcccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCC
Confidence 65554321 11111 0 00011100 011110 10 1111222333444444445555432211 11
Q ss_pred --CchhHHHHHHHHHHHhh---hhhhhccccchhHHHHHHHHHHHHHHhcccchHHHHhhhh
Q 048244 270 --GSLPGVTAIVVILATLL---PKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAP 326 (413)
Q Consensus 270 --~~l~~itt~~vilat~~---p~~~~~l~~~~~~lg~~ll~iffavIGa~~~l~~~i~~ap 326 (413)
-.|.++-++.+...+.+ |..+-+ ...++.++++-.=++.+|.+.|++++.+.++
T Consensus 251 ~~iPwFi~gFl~~a~lnS~~~iP~~~~~---~~~~lst~ll~~aMaAlGL~t~i~~l~~~G~ 309 (334)
T COG2855 251 ITIPWFILGFLLVALLNSLGLIPAEVVS---ALVTLSTFLLAMAMAALGLTTHIKALKKAGG 309 (334)
T ss_pred CCCCHHHHHHHHHHHHHhcccCcHHHHH---HHHHHHHHHHHHHHHHhccccCHHHHHHcCc
Confidence 12333444444444433 222111 1136788888888999999999999988765
No 13
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.64 E-value=0.012 Score=59.90 Aligned_cols=162 Identities=18% Similarity=0.118 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHhhccc-cc-chhHHHHHHHHHHHHhhCC--CCCCC-ChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 048244 49 TWTALLVTGAFGLWSEKTKL-GS-MVSAALVSTLLGLAASNLG--IIPYE-AKAYAVFLEFLLPLSIPLLLFRADLRRIV 123 (413)
Q Consensus 49 ~~a~l~~~~a~~~~~~k~~~-~~-~l~~~vl~~l~~~~lsn~g--lip~~-s~~y~~v~~~llPlaI~LlLl~~Dlr~i~ 123 (413)
-+.+.+.++.++.+..+++. .+ -+|+.++++++|++++|.- -.|.. .|=-++..+.++-..|.|+=++.+++++.
T Consensus 6 G~~l~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~ 85 (335)
T TIGR00698 6 GLLQMALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIA 85 (335)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHH
Confidence 34455556666777666654 33 3899999999999999942 12222 33346788999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHH-HHHHHhcccccCcchHHHHHHh--hhccccccccHHHHHHHhCCChHHHHHHHHHHH
Q 048244 124 QSTGILLLAFLLGSVATTVGTL-VAFLLVPMRSLGTDSWKIASAF--MGSYIGGSINYVAISEALGVSPSVLAAGVAADN 200 (413)
Q Consensus 124 k~~~~~L~~F~~gsvgtviG~~-va~~l~~~~~lg~~~wkiag~l--~gsyiGGs~N~vAv~~al~~~~~~~aa~~aaDn 200 (413)
+.|.+.+..-....++++..+. ++-..++ +.++ .+.+ +|+=|=|..=-.|++.+.+.+||..+++++.=+
T Consensus 86 ~~G~~~l~~~~~~v~~~~~~~~~~g~k~l~---l~~~----~~~Lia~GtsICGaSAi~A~a~~i~A~~~~~a~ava~V~ 158 (335)
T TIGR00698 86 DVGPNEIVADTLILTSTFFLTVFLGSSRLK---LDKQ----MSILLGAGSSICGAAAVAAIEPVIKAEKEKVSVAIAIVV 158 (335)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhC---CChh----HHHHHHcchhHHHHHHHHHhccccCCCccceeeeehHHH
Confidence 9999877665555555544322 2223333 2222 2333 345555677778889999999998888888867
Q ss_pred HHHHHHHHHHHHhcccC
Q 048244 201 VITAIYFMILFTLASKI 217 (413)
Q Consensus 201 v~~~~~~~~L~~l~~~~ 217 (413)
++..+-+.++-.+.+..
T Consensus 159 lfgt~am~l~P~l~~~l 175 (335)
T TIGR00698 159 IFGTTGIFLYPSIYHYA 175 (335)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777666665555433
No 14
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.43 E-value=0.29 Score=53.60 Aligned_cols=87 Identities=16% Similarity=0.198 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH-HHhhccCCCcchHHHHhhc
Q 048244 299 TLALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLL-IASNANVGGPTTACGMATT 377 (413)
Q Consensus 299 ~lg~~ll~iffavIGa~~~l~~~i~~ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~-iAS~AnIGGpaTA~a~Aaa 377 (413)
.+..+++=+||..+|++.|+..+.+.-+..+...+..+.+-.+..++.+|.+|.+..+.. ++..=|-+|.-+-.....+
T Consensus 265 pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a 344 (601)
T PRK03659 265 PFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAA 344 (601)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHH
Confidence 445678889999999999998876554455556667788888999999999999987755 4433344454443333434
Q ss_pred cCCCCchHH
Q 048244 378 KGWGSLVVP 386 (413)
Q Consensus 378 ~~w~~Lv~p 386 (413)
.+ ..++.+
T Consensus 345 ~~-~g~i~~ 352 (601)
T PRK03659 345 SS-QRLLQG 352 (601)
T ss_pred Hh-CCCCCH
Confidence 43 444444
No 15
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.33 E-value=0.38 Score=52.90 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Q 048244 299 TLALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIA 360 (413)
Q Consensus 299 ~lg~~ll~iffavIGa~~~l~~~i~~ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~iA 360 (413)
.+..+++=+||..+|++.|+..+.+.-+..+.+.+..+++-.+..+..+|++|.+..+....
T Consensus 268 pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~ 329 (621)
T PRK03562 268 PFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWF 329 (621)
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHH
Confidence 34567788999999999999886554444455556677888899999999999997766554
No 16
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.20 E-value=0.012 Score=60.77 Aligned_cols=170 Identities=22% Similarity=0.249 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-cCCchhHHHHHHHHHHHhhhhhhh----ccccchhHHHHHHHHHHHHHHhccc
Q 048244 242 LQTATALAISFVICKTATYLSNLFGI-QGGSLPGVTAIVVILATLLPKQFS----YLAPAGDTLALVLMQVFFSVVGASG 316 (413)
Q Consensus 242 ~~~~~~lava~~i~~~~~~la~~l~~-~~~~l~~itt~~vilat~~p~~~~----~l~~~~~~lg~~ll~iffavIGa~~ 316 (413)
.|.-..+..+.....+|+++-+..+. ++..+|.--+=-.+.+-..+...+ +++-. ..+=+.+|.+||+++|.++
T Consensus 5 ~n~~~tl~~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~~~~fd-~~l~~~fmliFFttiglsa 83 (404)
T COG0786 5 LNALETLILAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGVSLNFD-TSLQDVFMLIFFATIGLSA 83 (404)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceEEEeCC-cccccHHHHHHHHHhcccc
Confidence 34555666677777788888876654 233333311111112222221111 11111 1356788999999999999
Q ss_pred chHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH-hhccCCCcchHHHHhhcc---CCCCchHHHHH
Q 048244 317 SIWNVINTAP---SIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIA-SNANVGGPTTACGMATTK---GWGSLVVPGIL 389 (413)
Q Consensus 317 ~l~~~i~~ap---~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~iA-S~AnIGGpaTA~a~Aaa~---~w~~Lv~pgvL 389 (413)
|+....+... .++.++.....++-.+-...+|++++|+-.=+.+ |..=.||-.||++.+..+ |-++-.-.|+-
T Consensus 84 ~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaAA~~~~f~~~G~~~A~~va~A 163 (404)
T COG0786 84 SFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAAAWGPTFEDLGAEGATEVAMA 163 (404)
T ss_pred chhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCchHHHHHHHHHhcCCcchHHHHHH
Confidence 9999755443 4455566667777777788999999999888888 999999999999988753 55677889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 048244 390 AGIFGISMATFLGLGFGTTVLKH 412 (413)
Q Consensus 390 ~GvlGyaiGtylGi~v~~~ll~~ 412 (413)
++++|-..|--+|.-++.++.||
T Consensus 164 ~ATfGlv~GgliGgpva~~li~k 186 (404)
T COG0786 164 SATFGLVAGGLIGGPVARWLIKK 186 (404)
T ss_pred HHHHHHHHhHhcCcHHHHHHHHh
Confidence 99999999999999999998865
No 17
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=97.06 E-value=0.51 Score=49.12 Aligned_cols=316 Identities=16% Similarity=0.120 Sum_probs=163.8
Q ss_pred ChHHHHHHHHHHHHHHHH-HhhcccccchhHHHHHHHHHHHHhh--CCCCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Q 048244 45 DHWGTWTALLVTGAFGLW-SEKTKLGSMVSAALVSTLLGLAASN--LGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRR 121 (413)
Q Consensus 45 ~~~~~~a~l~~~~a~~~~-~~k~~~~~~l~~~vl~~l~~~~lsn--~glip~~s~~y~~v~~~llPlaI~LlLl~~Dlr~ 121 (413)
+......+++..+.+.-+ .+|. .+|+++--++.|+++.+ .+.++.+++.-+...+.-+=+.+++.=++.|+++
T Consensus 6 ~~l~~~~iiL~~a~i~~~l~~rl----~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~ 81 (397)
T COG0475 6 LILLQLLILLLVAVILGPLFKRL----GLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLER 81 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc----CCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHH
Confidence 344455555555555434 7774 46777777788888888 4445556677788999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHH----HhcccccCcchHHHHHH-hhhccccccccHHHHHH--HhCCCh-HHHH
Q 048244 122 IVQSTGILLLAFLLGSVATTVGTLVAFL----LVPMRSLGTDSWKIASA-FMGSYIGGSINYVAISE--ALGVSP-SVLA 193 (413)
Q Consensus 122 i~k~~~~~L~~F~~gsvgtviG~~va~~----l~~~~~lg~~~wkiag~-l~gsyiGGs~N~vAv~~--al~~~~-~~~a 193 (413)
++|..++. ++..+.++...-...+.. .++ ++.+..-..|+ ++.|=+| +..--+.| .++.+. +..-
T Consensus 82 l~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~g---~~~~~al~lg~~l~~sS~~--i~~~iL~e~~~~~~~~g~~~l 154 (397)
T COG0475 82 LKKVGRSV--GLGVAQVGLTAPFLLGLLLLLGILG---LSLIAALFLGAALALSSTA--IVLKILMELGLLKTREGQLIL 154 (397)
T ss_pred HHHhchhh--hhhHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHH--HHHHHHHHhccccchHHHHHH
Confidence 99999995 555555544444333321 122 22222222222 2222221 11111112 112222 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCC-C----C-----------CCcc-cc--ccCCCCCCChHHHHHHHHHHHHH
Q 048244 194 AGVAADNVITAIYFMILFTLASKIPPEASP-A----N-----------GTEV-DK--ESNSEDKTPVLQTATALAISFVI 254 (413)
Q Consensus 194 a~~aaDnv~~~~~~~~L~~l~~~~~~~~~~-~----~-----------~~~~-~~--~~~~~~~i~~~~~~~~lava~~i 254 (413)
.....|.+...+.+.+...+.+..+..... . . .... +. ...++.+.+-......+.+.+..
T Consensus 155 ~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~~~~e~~~~~~l~i~l~~ 234 (397)
T COG0475 155 GALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFILFVLLLVLGA 234 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 445556666666666665554211100000 0 0 0000 00 00000000011112222222221
Q ss_pred HHHHHHHHHhhcccCCchhHHHHHHHHHHHhhhhhhhccccchhHHHH-HHHHHHHHHHhcccchHHHHhhhhHHHHHHH
Q 048244 255 CKTATYLSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLAL-VLMQVFFSVVGASGSIWNVINTAPSIFLFAL 333 (413)
Q Consensus 255 ~~~~~~la~~l~~~~~~l~~itt~~vilat~~p~~~~~l~~~~~~lg~-~ll~iffavIGa~~~l~~~i~~ap~l~l~~~ 333 (413)
. ++++..+.+ ...--+...+.++....+ -++++..=+.++. +++=+||..+|++.|+..+.+.-+..+....
T Consensus 235 a----~l~e~~gls--~ilGAFlaGl~ls~~~~~-~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~ 307 (397)
T COG0475 235 A----YLAELLGLS--MILGAFLAGLLLSESEYR-KHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVA 307 (397)
T ss_pred H----HHHHHhChh--HHHHHHHHHHHhcccccc-hHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHH
Confidence 1 122221100 011111122222221111 0234332256788 9999999999999999997655555577777
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHhhccCCCcchHHHHhhcc
Q 048244 334 VQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMATTK 378 (413)
Q Consensus 334 i~l~iH~~~~l~~gkLfk~~l~~~~iAS~AnIGGpaTA~a~Aaa~ 378 (413)
+.+..-.+.....+|++|.+..+..-....-.++...+-++++.-
T Consensus 308 ~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~ 352 (397)
T COG0475 308 LAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIA 352 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhc
Confidence 788888888999999999987776666666666666666655544
No 18
>PRK05326 potassium/proton antiporter; Reviewed
Probab=96.85 E-value=0.33 Score=52.59 Aligned_cols=296 Identities=15% Similarity=0.133 Sum_probs=147.1
Q ss_pred hHHHHHHHHHHHHHH-HHHhhcccccchhHHHHHHHHHHHHhhCCC--CCCC-ChHHHHHHHHHHHHHHHHHHHHhhHHH
Q 048244 46 HWGTWTALLVTGAFG-LWSEKTKLGSMVSAALVSTLLGLAASNLGI--IPYE-AKAYAVFLEFLLPLSIPLLLFRADLRR 121 (413)
Q Consensus 46 ~~~~~a~l~~~~a~~-~~~~k~~~~~~l~~~vl~~l~~~~lsn~gl--ip~~-s~~y~~v~~~llPlaI~LlLl~~Dlr~ 121 (413)
.+...++++..+.+. ...+|. .+|.++.-++.|+++...++ ++.+ .+..+.+.+..++..++..=++.|.|+
T Consensus 7 ~ll~~~~ll~l~~~~~~l~~r~----~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~ 82 (562)
T PRK05326 7 LLLIGALLLLLSILASRLSSRL----GIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSS 82 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHH
Confidence 344555555555553 336664 46777777888888887543 5543 345567777777777777777899999
Q ss_pred HHHhhhHHHHHHHHHHH-HHHHHHHHHHHHhcccccCcchHHHHHHhhhccccccccH--HHHHHHhC--CChHHHHHH-
Q 048244 122 IVQSTGILLLAFLLGSV-ATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINY--VAISEALG--VSPSVLAAG- 195 (413)
Q Consensus 122 i~k~~~~~L~~F~~gsv-gtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~--vAv~~al~--~~~~~~aa~- 195 (413)
++|..++.+..-..|.+ .+++.+..++++++. .|. .+.+.|+-++-+.=- .++=+..+ .+++.-...
T Consensus 83 l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~------~~~-~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~ 155 (562)
T PRK05326 83 FRPALGPALSLATLGVLITAGLTGLFAHWLLGL------DWL-EGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLE 155 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CHH-HHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhh
Confidence 99988886655555544 444445566666642 243 346666666655322 22223445 554322111
Q ss_pred --HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHHHH-------------
Q 048244 196 --VAADNVITAIYFMILFTLASKIPPEASPANGTEVDKESNSEDKTPVLQTATALAISFVICKTATY------------- 260 (413)
Q Consensus 196 --~aaDnv~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~lava~~i~~~~~~------------- 260 (413)
-..|..++.+.+.++..+............ . ..-.......+.++..+.....+
T Consensus 156 ~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~~~~~~ 224 (562)
T PRK05326 156 IESGSNDPMAVFLTITLIELITGGETGLSWGF---L--------LLFLQQFGLGALIGLLGGWLLVQLLNRIALPAEGLY 224 (562)
T ss_pred hhhhcccHHHHHHHHHHHHHHhCCCCcchHHH---H--------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHH
Confidence 123334443333333333211000000000 0 00000111111111111111111
Q ss_pred -------------HHHhhcccCCchhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhcccchHHHHhhhhH
Q 048244 261 -------------LSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAPS 327 (413)
Q Consensus 261 -------------la~~l~~~~~~l~~itt~~vilat~~p~~~~~l~~~~~~lg~~ll~iffavIGa~~~l~~~i~~ap~ 327 (413)
+++.++ .+.+.......+.+.+.-++.-++++...+.+..++.-+||..+|+..|..++.+..+.
T Consensus 225 ~i~~l~~~l~~~~~a~~lg--~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~ 302 (562)
T PRK05326 225 PILVLAGALLIFALTAALG--GSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALP 302 (562)
T ss_pred HHHHHHHHHHHHHHHHHHC--CcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 122221 11222222222222221111111222222456666666789999999998886544333
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhccchhHHHHHhhccC
Q 048244 328 IFLF-ALVQVTVHLAIILGLGKLFHFDLKLLLIASNANV 365 (413)
Q Consensus 328 l~l~-~~i~l~iH~~~~l~~gkLfk~~l~~~~iAS~AnI 365 (413)
.+++ .++.++.-.+..+...+.+|++..|-..-|-++.
T Consensus 303 ~l~i~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~g~ 341 (562)
T PRK05326 303 ALLLALFLILVARPLAVFLSLLPFRFNLREKLFISWVGL 341 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCHhhhheeeeecc
Confidence 3332 2334455566667777889999999988887643
No 19
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=96.61 E-value=0.96 Score=45.75 Aligned_cols=234 Identities=18% Similarity=0.142 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHhhhccccccccHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Q 048244 129 LLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFM 208 (413)
Q Consensus 129 ~L~~F~~gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~~~~~~aa~~aaDnv~~~~~~~ 208 (413)
....+.+.++.+++-..+..+++. | .. .|...-++.++.-||-..+++++|..|.|....+..-..=.+.-..-..
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~l~-r-~~--~~d~~TA~~~~~PGg~s~m~~la~~~gad~~~Va~~q~lRl~~Vv~~vP 128 (318)
T PF05145_consen 53 WWPPMLLLLVVTLLLSLVGAWLLR-R-IS--GLDRATAFFASMPGGLSEMVALAEEYGADTRRVALVQSLRLLLVVLLVP 128 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-H-Hc--CCChhHHHHHcCCccHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHH
Confidence 344455555555555555555542 2 11 1335577899999999999999999999999888887776666655555
Q ss_pred HHHHhcccCCCCCCCCCCCccccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHhhhh
Q 048244 209 ILFTLASKIPPEASPANGTEVDKESNSEDKTPVLQTATALAISFVICKTATYLSNLFGIQGGSLPGVTAIVVILATLLPK 288 (413)
Q Consensus 209 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~lava~~i~~~~~~la~~l~~~~~~l~~itt~~vilat~~p~ 288 (413)
++.......+.. ..++. .+ ...+.+..+....+.++ .++-++.+.+..+...+ .-..+...+.+.+..
T Consensus 129 ~i~~~~~~~~~~----~~~~~--~~-~~~~~~~~~l~~l~~~~----~~g~~l~~~l~iPa~~l-lGpml~~a~~~~~~~ 196 (318)
T PF05145_consen 129 FIASLLGGGNSA----ASEPG--PH-AVPLMSWLWLALLALAA----LAGGLLARRLRIPAPWL-LGPMLVSAILNLFGG 196 (318)
T ss_pred HHHHHhhhcccc----cCCcc--cc-cCCCCCHHHHHHHHHHH----HHHHHHHHHhCCCcHHH-HHHHHHHHHHHHHhC
Confidence 555433211000 00000 00 00113334444443333 33455555554433222 211112222222211
Q ss_pred hhhccccchhHHHHHHHHHHHHHHhcccc---hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhhccC
Q 048244 289 QFSYLAPAGDTLALVLMQVFFSVVGASGS---IWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANV 365 (413)
Q Consensus 289 ~~~~l~~~~~~lg~~ll~iffavIGa~~~---l~~~i~~ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~iAS~AnI 365 (413)
.--.++ +.+-..-..+.=..||..-+ +++.-+..|..++.....+....++-+++.|+.++|+.++.+|+. =
T Consensus 197 ~~~~~P---~~l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~La~a--P 271 (318)
T PF05145_consen 197 PSFSLP---PWLVNAAQVLIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSRLTGIDFLTALLATA--P 271 (318)
T ss_pred CCCCCC---HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhC--C
Confidence 111221 11111111122455665543 444444567777778888888889999999999999999999974 5
Q ss_pred CCcchHHHHhhccCCCCch
Q 048244 366 GGPTTACGMATTKGWGSLV 384 (413)
Q Consensus 366 GGpaTA~a~Aaa~~w~~Lv 384 (413)
||-+.-..+|.+.| -|..
T Consensus 272 GGl~eM~l~A~~l~-~d~~ 289 (318)
T PF05145_consen 272 GGLAEMALIALALG-ADVA 289 (318)
T ss_pred ccHHHHHHHHHHcC-CChH
Confidence 89999999999887 5533
No 20
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.32 E-value=2.1 Score=46.31 Aligned_cols=89 Identities=15% Similarity=0.010 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhcccchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHh-hccCCCcchHHHHhhcc
Q 048244 300 LALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIAS-NANVGGPTTACGMATTK 378 (413)
Q Consensus 300 lg~~ll~iffavIGa~~~l~~~i~~ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~iAS-~AnIGGpaTA~a~Aaa~ 378 (413)
+..+++=+||+.+|++.|+..+.+..+..+.+.++.++.-.+..+..+|.+|.|.++....+ .-|-.|.-+--....++
T Consensus 277 ~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~ 356 (558)
T PRK10669 277 LRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGM 356 (558)
T ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHH
Confidence 45667889999999999999876544444555566677788888899999999988776663 22333443333333444
Q ss_pred CCCCchHHHHH
Q 048244 379 GWGSLVVPGIL 389 (413)
Q Consensus 379 ~w~~Lv~pgvL 389 (413)
+ ..++.+-..
T Consensus 357 ~-~gii~~~~~ 366 (558)
T PRK10669 357 A-LNLLPQAGQ 366 (558)
T ss_pred h-CCCCCHHHH
Confidence 3 444444433
No 21
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=96.05 E-value=3.8 Score=46.82 Aligned_cols=59 Identities=8% Similarity=0.247 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhcccchHHHHhhhhH---HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Q 048244 301 ALVLMQVFFSVVGASGSIWNVINTAPS---IFLFALVQVTVHLAIILGLGKLFHFDLKLLLIA 360 (413)
Q Consensus 301 g~~ll~iffavIGa~~~l~~~i~~ap~---l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~iA 360 (413)
..+|+=+||+.+|+..|+..+ .+... .+++.++.++.-.+..++.+|++|++..+....
T Consensus 324 ~~lflPlFFv~vGl~idl~~l-~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~l 385 (832)
T PLN03159 324 SGLLLPLFFAISGLKTNVTKI-QGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITL 385 (832)
T ss_pred HHHHHHHHHHHhhheeeHHHh-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 457778899999999999875 44322 222233334566778889999999998876553
No 22
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=95.98 E-value=0.85 Score=44.37 Aligned_cols=145 Identities=15% Similarity=0.075 Sum_probs=84.2
Q ss_pred HHHHhhcccccchhHHHHHHHHHHHHhhC--CCCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHH
Q 048244 60 GLWSEKTKLGSMVSAALVSTLLGLAASNL--GIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGS 137 (413)
Q Consensus 60 ~~~~~k~~~~~~l~~~vl~~l~~~~lsn~--glip~~s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~~F~~gs 137 (413)
+...||+ ++|.++.-++.|+++.+. |.+|.+ +..+.+.+.-+...++..=++.|+|+++|..++.+..-..+.
T Consensus 8 ~~l~~~l----~lP~~v~~il~GillGp~~lg~i~~~-~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~ 82 (273)
T TIGR00932 8 VPLSRRL----GIPSVLGYLLAGVLIGPSGLGLISNV-EGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQV 82 (273)
T ss_pred HHHHHHh----CCCHHHHHHHHHHHhCcccccCCCCh-HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 3446664 567777778888888854 556633 455666777777777777778999999999988777766665
Q ss_pred HHH-HHHHHHHHHHhcccccCcchHHHHHHhhhccccccccHHHHHHHhCC---Ch-HHHHHHHHHHHHHHHHHHHHHHH
Q 048244 138 VAT-TVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGV---SP-SVLAAGVAADNVITAIYFMILFT 212 (413)
Q Consensus 138 vgt-viG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~---~~-~~~aa~~aaDnv~~~~~~~~L~~ 212 (413)
+.+ ++-+....+.++.. -++.+-.+.+++.|-.+-.. .+-+.++. +. +..-.....|.+.+.+.+.+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~--~~~~~~lg~~ls~Ts~~v~~---~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~ 157 (273)
T TIGR00932 83 LVPGVLLGLLLGHLLGLA--LGAAVVIGIILALSSTAVVV---QVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPL 157 (273)
T ss_pred HHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhHHHHHH---HHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 33233233344311 13455556666655332221 12223333 22 23333444677777666666655
Q ss_pred hc
Q 048244 213 LA 214 (413)
Q Consensus 213 l~ 214 (413)
..
T Consensus 158 ~~ 159 (273)
T TIGR00932 158 LA 159 (273)
T ss_pred Hh
Confidence 43
No 23
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=95.89 E-value=0.14 Score=52.45 Aligned_cols=108 Identities=19% Similarity=0.126 Sum_probs=87.1
Q ss_pred chhHHHHHHHHHHHHhhCCCCCCC-----ChHHHHHHHHHHHHHHH-HHHHHhhHHHHHHhh-hHHHHHHHHHHHHHHHH
Q 048244 71 MVSAALVSTLLGLAASNLGIIPYE-----AKAYAVFLEFLLPLSIP-LLLFRADLRRIVQST-GILLLAFLLGSVATTVG 143 (413)
Q Consensus 71 ~l~~~vl~~l~~~~lsn~glip~~-----s~~y~~v~~~llPlaI~-LlLl~~Dlr~i~k~~-~~~L~~F~~gsvgtviG 143 (413)
.+++.+++++++.++..+|++|.+ ...|+++...+.+..++ +=+-..|++++.+.- .+.+..++.+.++.+++
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~ 282 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILG 282 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHH
Confidence 578999999999999999999984 45777777777776555 344558999999866 89999999999999999
Q ss_pred HHHHHHHhcccccCcchHHHHHHhhhccccccccHHHH
Q 048244 144 TLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAI 181 (413)
Q Consensus 144 ~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv 181 (413)
+.+..+++++ -|-.-.+.+.+|-+-+||+-|..-+
T Consensus 283 s~lvGKllG~---YPiE~aItagLC~~~~GGtGDvavL 317 (347)
T TIGR00783 283 GAFLGKLMGM---YPVESAITAGLCNSGMGGTGDVAVL 317 (347)
T ss_pred HHHHHHHhCC---ChHHHHHHHhhhccCCCCCCceeee
Confidence 9888888753 3444557788999999999997533
No 24
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=95.80 E-value=2.7 Score=43.18 Aligned_cols=304 Identities=17% Similarity=0.151 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHHHH-Hhhccc--ccchhHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 048244 48 GTWTALLVTGAFGLW-SEKTKL--GSMVSAALVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQ 124 (413)
Q Consensus 48 ~~~a~l~~~~a~~~~-~~k~~~--~~~l~~~vl~~l~~~~lsn~glip~~s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k 124 (413)
-.|.+.+..++++=| .++..+ +-.+|++.++..+....-+-==+| +.-..+-...+=..|=..+-..++..+
T Consensus 9 ~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~l~~P---~~l~~~~q~ilG~~ig~~~t~s~l~~l-- 83 (352)
T COG3180 9 LQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLTLPLP---RGLFKAGQVILGIMIGASLTPSVLDTL-- 83 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccccccCC---hHHHHHHHHHHHHHHhhhcCHHHHHHH--
Confidence 456666666655333 555444 455664554444333221111122 222222222233333333333333333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHhhhccccccccHHHHHHHhCCChHHHHHHHHHHHHHHH
Q 048244 125 STGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITA 204 (413)
Q Consensus 125 ~~~~~L~~F~~gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~~~~~~aa~~aaDnv~~~ 204 (413)
.+..+.|++-++.|+....+..++++ | .+ .|...-++-|+-=||-.-|..++|.+|.+-...+.+-..-.++-.
T Consensus 84 --~~~w~~~~~v~~~tl~~s~l~g~ll~-r-~~--~~~~~Ta~~gs~PGgas~m~~iA~d~gAd~~~VAl~Q~lRvl~Vv 157 (352)
T COG3180 84 --KSNWPIVLVVLLLTLLSSILLGWLLK-R-FS--ILPGNTAFLGSSPGGASAMVSIAQDYGADLRLVALMQYLRVLFVV 157 (352)
T ss_pred --HHcccHHHHHHHHHHHHHHHHHHHHH-H-hc--CCCcchhhHhcCCchHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 34455566666666655555555543 2 22 122345677888999999999999999999999888777555444
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCccccccCCCCCCChHHH---HHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHH
Q 048244 205 IYFMILFTLASKIPPEASPANGTEVDKESNSEDKTPVLQT---ATALAISFVICKTATYLSNLFGIQGGSLPGVTAIVVI 281 (413)
Q Consensus 205 ~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~lava~~i~~~~~~la~~l~~~~~~l~~itt~~vi 281 (413)
.-..+.. +.... |+.. . +.+++.+.++.|. .....++.. +-.+.+.+..+...+..-..++.+
T Consensus 158 l~vplv~---~~~~~-~~a~-~-----~~~~~i~~~~~~~~~~~~l~~~~~~----~g~l~~~lr~Pa~~ll~~l~l~a~ 223 (352)
T COG3180 158 LLAPLVS---RLFVG-DGAN-G-----SGTPEIWLPPVDWLILLLLILAALL----GGLLGKLLRFPAPTLLGPLLLGAI 223 (352)
T ss_pred HHHHHHH---HHhcC-CCCC-C-----CCCccccCchhhHHHHHHHHHHHHH----HHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3332222 22221 2211 1 0111112222222 222333333 333444443333333332222222
Q ss_pred HHHhhhhhhhccccchhHHHHHHHHHHHHHHhcccchHH---HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Q 048244 282 LATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWN---VINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLL 358 (413)
Q Consensus 282 lat~~p~~~~~l~~~~~~lg~~ll~iffavIGa~~~l~~---~i~~ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~ 358 (413)
.-......+ +++..-..++..+ .-+.||..-|-.. .-+..|..++..+..+.+....-.+++|+.++|+.+..
T Consensus 224 v~~~~~~~~-~lP~wl~~va~~~---iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~ 299 (352)
T COG3180 224 VHFGGGITI-QLPAWLLAVAQAL---IGALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMAGLLSWLTGIDLNTAY 299 (352)
T ss_pred hhcccceee-eCCHHHHHHHHHH---HHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 111110001 2222212233322 2577887755444 34446888888888999999999999999999999999
Q ss_pred HHhhccCCCcchHHHHhhccCCCCc
Q 048244 359 IASNANVGGPTTACGMATTKGWGSL 383 (413)
Q Consensus 359 iAS~AnIGGpaTA~a~Aaa~~w~~L 383 (413)
+| ..=||-.+-+++|.+.| -|-
T Consensus 300 La--~sPGGl~~ma~~A~~l~-ad~ 321 (352)
T COG3180 300 LA--TSPGGLDTMAAIAAALG-ADP 321 (352)
T ss_pred HH--cCCCcHHHHHHHHHHcC-CCh
Confidence 97 34699999999999998 443
No 25
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=95.03 E-value=0.3 Score=51.06 Aligned_cols=117 Identities=17% Similarity=0.175 Sum_probs=87.2
Q ss_pred HHHHhhcccccchhHHHHHHHHHHHHhhCCCCCCC-----ChHHHHHHHHHHHHHHHHHHHH-hhHHHHHH-hhhHHHHH
Q 048244 60 GLWSEKTKLGSMVSAALVSTLLGLAASNLGIIPYE-----AKAYAVFLEFLLPLSIPLLLFR-ADLRRIVQ-STGILLLA 132 (413)
Q Consensus 60 ~~~~~k~~~~~~l~~~vl~~l~~~~lsn~glip~~-----s~~y~~v~~~llPlaI~LlLl~-~Dlr~i~k-~~~~~L~~ 132 (413)
+...+|.- .+++..+.+++.+++.-+|++|.+ .+.|+++.+++.|..+.-.=.. .|++++.+ .++..+..
T Consensus 262 G~ll~~~i---~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~ 338 (414)
T PF03390_consen 262 GVLLSKLI---GIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVI 338 (414)
T ss_pred HHHHHHhc---CCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHH
Confidence 44444443 788999999999999999999984 5789999999888777777666 99999886 45556666
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHhhhccccccccHHHHH
Q 048244 133 FLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAIS 182 (413)
Q Consensus 133 F~~gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~ 182 (413)
-+...++.++|+.+..++++ +-|-.-.+.+.+|-+-+|||-|..-++
T Consensus 339 ~~~~Vl~~~~~a~~vG~l~g---~YPvEsAItaGLC~an~GGtGDvAVLs 385 (414)
T PF03390_consen 339 VLATVLGAVIGAFLVGKLVG---FYPVESAITAGLCMANMGGTGDVAVLS 385 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhC---CChHHHHHHhhhcccCCCCCCcchhee
Confidence 66666666666666666664 235445678889999999999984433
No 26
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=94.41 E-value=0.64 Score=46.87 Aligned_cols=81 Identities=21% Similarity=0.299 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-HHhccchhH-HHHHhhccCCCcchHHHHhh
Q 048244 299 TLALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLG-KLFHFDLKL-LLIASNANVGGPTTACGMAT 376 (413)
Q Consensus 299 ~lg~~ll~iffavIGa~~~l~~~i~~ap~l~l~~~i~l~iH~~~~l~~g-kLfk~~l~~-~~iAS~AnIGGpaTA~a~Aa 376 (413)
.....++..=.+..|++-++.++.+.++.-++...+.+..-..+...++ |+||+|.+. .++++-..|.|.+.+.+++.
T Consensus 56 ~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~ 135 (305)
T PF03601_consen 56 FSSKKLLRLGIVLLGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAP 135 (305)
T ss_pred HHHHHHHHHHHHHHCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcc
Confidence 3345677777888899999999988888667777777777777778888 999999875 56778889999999998888
Q ss_pred ccC
Q 048244 377 TKG 379 (413)
Q Consensus 377 a~~ 379 (413)
..+
T Consensus 136 ~i~ 138 (305)
T PF03601_consen 136 VIK 138 (305)
T ss_pred ccc
Confidence 643
No 27
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=94.36 E-value=2.2 Score=43.15 Aligned_cols=75 Identities=12% Similarity=0.064 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcccchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccchhH-HHHH--hhccCCCcchHHHHhhcc
Q 048244 304 LMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKL-LLIA--SNANVGGPTTACGMATTK 378 (413)
Q Consensus 304 ll~iffavIGa~~~l~~~i~~ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~-~~iA--S~AnIGGpaTA~a~Aaa~ 378 (413)
.+-++-...|+.-|+.++++..+.-++.+++++.+-..+...++|++|.|.+. .+++ +-.+|.||+-.++....+
T Consensus 197 ~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAadP~~ 274 (312)
T PRK12460 197 LIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAADPSL 274 (312)
T ss_pred eHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhchhH
Confidence 55556778899999999988888888899999999999999999999988654 4455 344566665554444444
No 28
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.30 E-value=0.44 Score=48.69 Aligned_cols=81 Identities=17% Similarity=0.130 Sum_probs=67.4
Q ss_pred cchhHHHHHHHHHHHHhhCCCCCCCC-hHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 048244 70 SMVSAALVSTLLGLAASNLGIIPYEA-KAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAF 148 (413)
Q Consensus 70 ~~l~~~vl~~l~~~~lsn~glip~~s-~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~~F~~gsvgtviG~~va~ 148 (413)
..+|--++-|+...++++++.+|++. +.-+.+.++++-+++.-+=++.|+|+++|.|+|.+...++..+-..+++..-.
T Consensus 249 ~~~P~FvlgFl~~~~l~S~~~lp~~~~~~l~~~~~~ll~~AmaaiGl~t~~~~l~~~G~kp~~~g~i~~~~l~~~~~~l~ 328 (335)
T TIGR00698 249 ITIPWFAVLFIGVAIFNSFDLLPGEVVQALVPLDTFLLATAMAALGLTTNVSAVKKAGVKPLFASYAGYLWLVGGGFVLN 328 (335)
T ss_pred CCCChHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999753 34457889999999999999999999999999999888888776666665444
Q ss_pred HH
Q 048244 149 LL 150 (413)
Q Consensus 149 ~l 150 (413)
.+
T Consensus 329 ~~ 330 (335)
T TIGR00698 329 YL 330 (335)
T ss_pred HH
Confidence 43
No 29
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=93.80 E-value=0.0029 Score=64.18 Aligned_cols=289 Identities=12% Similarity=0.104 Sum_probs=37.1
Q ss_pred HhhcccccchhHHHHHHHHHHHHhhCCCC--CCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHH
Q 048244 63 SEKTKLGSMVSAALVSTLLGLAASNLGII--PYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVAT 140 (413)
Q Consensus 63 ~~k~~~~~~l~~~vl~~l~~~~lsn~gli--p~~s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~~F~~gsvgt 140 (413)
.||.+ +|.++.-++.|+++.+.+.- +++.+.++.+.+..++..++..=++.|.|+++|..++.+..-..+.+.+
T Consensus 15 ~~r~~----iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~~~~~ 90 (380)
T PF00999_consen 15 FRRLG----IPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVGFLLP 90 (380)
T ss_dssp -------------------------------------S-SSHHHHS--SSHHHHTTGGGG--------------------
T ss_pred HHHhC----CCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccceeeeh
Confidence 55555 78888888899999988665 4333566777888888888888889999999999888666666655544
Q ss_pred HHH-HHHHH-HHhcccccCcchHHHHHHhhhccccccccHHHHHHHhCCCh---HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 048244 141 TVG-TLVAF-LLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSP---SVLAAGVAADNVITAIYFMILFTLAS 215 (413)
Q Consensus 141 viG-~~va~-~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~~~---~~~aa~~aaDnv~~~~~~~~L~~l~~ 215 (413)
.+. +...+ .++..+.-..+.--.+..++.+-.+-..+... |.-..++ +..-.....|++++.+.+.++....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~~v~~~l~--~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~~~ 168 (380)
T PF00999_consen 91 FILVGFLLSFFLFILGLSWAEALLLGAILSATSPAIVSPVLK--ELGLLPSRLGRLLLSESVINDIIAIILLSILISLAQ 168 (380)
T ss_dssp -----------------------TTHHHHTT--HHHHHHHH---HHHT-SSTTHHHHTTTTTTTTTTTTTTT--------
T ss_pred hhHHHHHHHHhhccchhhhHHHhhhHHhhhcccccchhhhhh--hhhcccccccchhhhhchhhccchhhhhhhhhhhhc
Confidence 333 33332 21110100112222333444444333333221 2223332 22223333444444433333333220
Q ss_pred cCCCCCCCC-CC----------------CccccccCCC-CCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHH
Q 048244 216 KIPPEASPA-NG----------------TEVDKESNSE-DKTPVLQTATALAISFVICKTATYLSNLFGIQGGSLPGVTA 277 (413)
Q Consensus 216 ~~~~~~~~~-~~----------------~~~~~~~~~~-~~i~~~~~~~~lava~~i~~~~~~la~~l~~~~~~l~~itt 277 (413)
.....+... -. ........++ ++.+..+....+++.+..+..++.+ +. +.......
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~----g~--s~~l~af~ 242 (380)
T PF00999_consen 169 ASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGLAEIL----GL--SGILGAFI 242 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccchhcchhhhhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhccccccc----cc--cccceeee
Confidence 000000000 00 0000000000 0111122333444444444444433 21 12222333
Q ss_pred HHHHHHHhhhhhhhccccchhHHH-HHHHHHHHHHHhcccchHHHH--hhhhHHHH-HHHHHHHHHHHHHHHHHHHhccc
Q 048244 278 IVVILATLLPKQFSYLAPAGDTLA-LVLMQVFFSVVGASGSIWNVI--NTAPSIFL-FALVQVTVHLAIILGLGKLFHFD 353 (413)
Q Consensus 278 ~~vilat~~p~~~~~l~~~~~~lg-~~ll~iffavIGa~~~l~~~i--~~ap~l~l-~~~i~l~iH~~~~l~~gkLfk~~ 353 (413)
..+.+. -++.-++++..-+.+. .++.-+||..+|++.|.+.+. .+.+...+ .....+.++.+......|..|.|
T Consensus 243 ~Gl~~~--~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 320 (380)
T PF00999_consen 243 AGLILS--NSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYLASRLFGIP 320 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eehccc--cccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceeehhhhhcccc
Confidence 333333 1222222322223455 788888999999999988864 23333333 33344578999999999999999
Q ss_pred hhHHHHHhhccC
Q 048244 354 LKLLLIASNANV 365 (413)
Q Consensus 354 l~~~~iAS~AnI 365 (413)
.++-..-+-.-.
T Consensus 321 ~~~~~~~~~~~~ 332 (380)
T PF00999_consen 321 WKEALFIGLGML 332 (380)
T ss_dssp --HHHHTTTTSS
T ss_pred cchhHHHHHhhc
Confidence 888777654333
No 30
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=93.72 E-value=0.75 Score=46.48 Aligned_cols=144 Identities=24% Similarity=0.235 Sum_probs=81.9
Q ss_pred HHHHhhcccccchhHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHH
Q 048244 60 GLWSEKTKLGSMVSAALVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVA 139 (413)
Q Consensus 60 ~~~~~k~~~~~~l~~~vl~~l~~~~lsn~glip~~s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~~F~~gsvg 139 (413)
..+..+.++...++ .++.+++|+++.| +.|.-.+..+--.++.+|+.++++=++.|+.++.+.|.+-+.. +.+-
T Consensus 155 a~gLA~ip~~~lv~-lilpILiGmilGN--ld~~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL---~v~v 228 (312)
T PRK12460 155 AAGLANIPIMALVA-ALLPLVLGMILGN--LDPDMRKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILL---GVLV 228 (312)
T ss_pred HHHHhcCChHHHHH-HHHHHHHHHHHhc--cchhhHHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHH---HHHH
Confidence 33466677766655 9999999999999 3332223333334458999999999999999999999775443 3333
Q ss_pred HHHHHHHHHHHhcccccCcchHHHHHHhhhccccccc-cHHHHHH---HhCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 048244 140 TTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSI-NYVAISE---ALGVSPSVLAAGVAADNVITAIYFMILFTL 213 (413)
Q Consensus 140 tviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~-N~vAv~~---al~~~~~~~aa~~aaDnv~~~~~~~~L~~l 213 (413)
+++.....+++- |.++.| +-++.+.+|--|=++ .-.|+++ .+..-.+.-.+-+++-.+++++-..++-..
T Consensus 229 v~~t~~~~~~i~--rllg~~--~~~g~li~stAGnAIcgpAAVaAadP~~~~~~~~Ataqvaa~vivTail~P~~t~~ 302 (312)
T PRK12460 229 TIVTGFFNIFAD--RLVGGT--GIAGAAASSTAGNAVATPLAIAAADPSLAPVAAAATAQVAASVIVTAILTPLLTSW 302 (312)
T ss_pred HHHHHHHHHHHH--HHhCCC--hhHHHHHHHHhhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445543 223322 234555555433221 1123333 222221222222455566777766666554
No 31
>COG2855 Predicted membrane protein [Function unknown]
Probab=93.70 E-value=0.6 Score=47.57 Aligned_cols=78 Identities=27% Similarity=0.340 Sum_probs=66.1
Q ss_pred ccchhHHHHHHHHHHHHhhCCCCCCC-ChHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 048244 69 GSMVSAALVSTLLGLAASNLGIIPYE-AKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLV 146 (413)
Q Consensus 69 ~~~l~~~vl~~l~~~~lsn~glip~~-s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~~F~~gsvgtviG~~v 146 (413)
++.+|--++.++.-+.+++++.+|++ .+.-+...++++-.++.-+=++.|+|++.|.|+|.+..=+++.+..++++..
T Consensus 250 ~~~iPwFi~gFl~~a~lnS~~~iP~~~~~~~~~lst~ll~~aMaAlGL~t~i~~l~~~G~kpl~la~~~~~~l~~~~l~ 328 (334)
T COG2855 250 KITIPWFILGFLLVALLNSLGLIPAEVVSALVTLSTFLLAMAMAALGLTTHIKALKKAGGKPLLLALLLWVFLVVGGLA 328 (334)
T ss_pred CCCCCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHcCccHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999987 4556778889999999999999999999999999888777777766665543
No 32
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=93.03 E-value=0.89 Score=42.01 Aligned_cols=104 Identities=18% Similarity=0.277 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHHHhcc--cchHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHH-HhccchhHHHHHhhccCCCcchHHH
Q 048244 298 DTLALVLMQVFFSVVGAS--GSIWNVINT-APSIFLFALVQVTVHLAIILGLGK-LFHFDLKLLLIASNANVGGPTTACG 373 (413)
Q Consensus 298 ~~lg~~ll~iffavIGa~--~~l~~~i~~-ap~l~l~~~i~l~iH~~~~l~~gk-Lfk~~l~~~~iAS~AnIGGpaTA~a 373 (413)
+.+.++.+.+|.+.+|.+ .++.+-+++ ...+++.++++..+..++.+.++| ++|+|..+. .-.--|+-|+.|+
T Consensus 53 ~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~---~G~~aGa~T~tp~ 129 (169)
T PF06826_consen 53 SFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLIALVIGRYLFKLNPGIA---AGILAGALTSTPA 129 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHccccCcHH
Confidence 567778888899999966 445554554 578888999999999999999998 999996543 3344588888999
Q ss_pred HhhccCC-CCchHHHHHHHHHHHHHHHHHHHHHHH
Q 048244 374 MATTKGW-GSLVVPGILAGIFGISMATFLGLGFGT 407 (413)
Q Consensus 374 ~Aaa~~w-~~Lv~pgvL~GvlGyaiGtylGi~v~~ 407 (413)
++++.+- ++.-.|. =.+||++.-..|...-.
T Consensus 130 L~~A~~~~~~~~~~~---~~vgYa~~Yp~g~i~~i 161 (169)
T PF06826_consen 130 LAAAQEAISDSGIPA---IAVGYAVTYPFGVIGVI 161 (169)
T ss_pred HHHHHHhhhcCCCch---hhhhHHHHHHHHHHHHH
Confidence 9998765 3433343 23566666666655433
No 33
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=92.10 E-value=13 Score=36.74 Aligned_cols=260 Identities=14% Similarity=0.157 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHHH----hhHHHH---HHhhhHHHHHHHHHHHHHHHHHH-HHHHHhccccc-CcchHHHHHHhhh
Q 048244 99 AVFLEFLLPLSIPLLLFR----ADLRRI---VQSTGILLLAFLLGSVATTVGTL-VAFLLVPMRSL-GTDSWKIASAFMG 169 (413)
Q Consensus 99 ~~v~~~llPlaI~LlLl~----~Dlr~i---~k~~~~~L~~F~~gsvgtviG~~-va~~l~~~~~l-g~~~wkiag~l~g 169 (413)
+.+.++.+|. ++++++. .+.+++ .|+-+..+..++. -.+-.+ +++.+. +.+ .++.+.....+.+
T Consensus 4 ~~~~~~~~~~-l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~----~~vi~Plla~~l~--~~~~l~~~~~~glvL~~ 76 (286)
T TIGR00841 4 TNLSTILLIL-LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLA----QYGIMPLTGFLLA--KVFKLPPELAVGVLIVG 76 (286)
T ss_pred hhHHHHHHHH-HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHH----HHHHHHHHHHHHH--HHhCCCHHHHHHHHhee
Confidence 3456788887 6666664 344444 4333333333332 222222 222221 111 2445555555555
Q ss_pred ccccccccHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCccccccCCCCCCChHHHHHHHH
Q 048244 170 SYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFMILFTLASKIPPEASPANGTEVDKESNSEDKTPVLQTATALA 249 (413)
Q Consensus 170 syiGGs~N~vAv~~al~~~~~~~aa~~aaDnv~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~la 249 (413)
.-=+|... .-.++..|-+.+.-+..++.+++.+.+-+.+.+.+-..... + ++-+++..++...+.
T Consensus 77 ~~P~~~~s-~v~t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~~~~------~--------~~~~v~~~~i~~~~~ 141 (286)
T TIGR00841 77 CCPGGTAS-NVFTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAKMWV------D--------GTLVVPYLGIGLSLV 141 (286)
T ss_pred eCCCchHH-HHHHHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc------C--------CCceecHHHHHHHHH
Confidence 55555444 45888889988888888888888888877776655321000 0 001233322222211
Q ss_pred HHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhcccchHHHHhhhhHHH
Q 048244 250 ISFVICKTATYLSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNVINTAPSIF 329 (413)
Q Consensus 250 va~~i~~~~~~la~~l~~~~~~l~~itt~~vilat~~p~~~~~l~~~~~~lg~~ll~iffavIGa~~~l~~~i~~ap~l~ 329 (413)
+=..=..+|..+.. ..|+.-++++.. +.++...+.+...++ ...+...+.++.+...
T Consensus 142 ~v~vPl~lG~~~r~---------------------~~p~~~~~~~~~-~~~s~~~l~liv~~~-~~~~~~~i~~~~~~~~ 198 (286)
T TIGR00841 142 AVLIPVSIGMLVKH---------------------KLPQIAKIILKV-GLISVFLLSVIIAVV-GGINVENLATIGPLLL 198 (286)
T ss_pred HHHHHHHHHHHHHH---------------------HhHHHHHHHHhC-chHHHHHHHHHHHHH-HHhhHHHHHHhhHHHH
Confidence 00000111111111 123222222221 234444433222222 2233333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHH----hhccCCCcchHHHHhhc-cCCCCchHHHHHHHHHHHHHHHHHHHH
Q 048244 330 LFALVQVTVHLAIILGLGKLFHFDLKLLLIA----SNANVGGPTTACGMATT-KGWGSLVVPGILAGIFGISMATFLGLG 404 (413)
Q Consensus 330 l~~~i~l~iH~~~~l~~gkLfk~~l~~~~iA----S~AnIGGpaTA~a~Aaa-~~w~~Lv~pgvL~GvlGyaiGtylGi~ 404 (413)
+.+++...+-..+-...+|++|.|.++.... ++=|.+ .|.++|.. ++ ++...|....+++.+..+..++..
T Consensus 199 ~~~~ll~~~~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~---lal~la~~~f~-~~~a~~~~~~~v~~~~~~~~~a~~ 274 (286)
T TIGR00841 199 LVGILLPLAGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQ---LCSTIAQLSFS-PEVAVPSAIFPLIYALFQLAFALL 274 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHhhheeeeeeeecccHH---HHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555567889999998554433 333444 45555554 56 777888888888887777776655
Q ss_pred HHH
Q 048244 405 FGT 407 (413)
Q Consensus 405 v~~ 407 (413)
...
T Consensus 275 ~~~ 277 (286)
T TIGR00841 275 FLI 277 (286)
T ss_pred HHH
Confidence 443
No 34
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=90.04 E-value=8.9 Score=39.95 Aligned_cols=147 Identities=15% Similarity=0.137 Sum_probs=85.6
Q ss_pred HHHHHhhhhccccCCCChHHHHHHHHHHHHH--HHH-HhhcccccchhHHH-HHHHHHHHHhhCCCCCCC-----ChHHH
Q 048244 29 VVMVRSQLSNPIISPNDHWGTWTALLVTGAF--GLW-SEKTKLGSMVSAAL-VSTLLGLAASNLGIIPYE-----AKAYA 99 (413)
Q Consensus 29 ~~~~~~~~~~~li~~~~~~~~~a~l~~~~a~--~~~-~~k~~~~~~l~~~v-l~~l~~~~lsn~glip~~-----s~~y~ 99 (413)
..+++.++ .+=...|-..---..+++...+ +-. ++.+. +|+++ +-+++.+++...|++|.+ .+.|+
T Consensus 248 ~~~~~ee~-~~~~k~d~~~~g~G~llA~~lf~~g~il~kf~~----~P~~va~MIil~a~lk~~nlvp~~i~~GA~~l~~ 322 (438)
T COG3493 248 KEATEEEL-EKEGKLDLKLMGAGMLLACTLFMAGGILGKFIG----LPGPVAFMIILVAILKAANLVPKEIEEGAKQLSQ 322 (438)
T ss_pred cchhhhhh-hhccCccHHHHHHHHHHHHHHHHHHHHHHHhhc----CCchHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 33455554 3223333333333444444444 222 33331 34444 888899999999999985 46888
Q ss_pred HHHHHHH-HHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhccc--ccCcchHHHHHHhhhccccccc
Q 048244 100 VFLEFLL-PLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMR--SLGTDSWKIASAFMGSYIGGSI 176 (413)
Q Consensus 100 ~v~~~ll-PlaI~LlLl~~Dlr~i~k~~~~~L~~F~~gsvgtviG~~va~~l~~~~--~lg~~~wkiag~l~gsyiGGs~ 176 (413)
++++.+. |++.-+=+.-.|++++.+.- -..+.+=++++++|...+.++.+ + .+-|-.-.+.+-+|=+-.||+-
T Consensus 323 F~sk~~t~~Lm~giGv~ytdl~ev~~al---t~~~vii~~~vVl~~i~~~~f~g-rl~~~YPVEaAI~aglC~a~~GGtG 398 (438)
T COG3493 323 FFSKNLTWPLMAGIGVAYTDLNEVAAAL---TWQNVIIALSVVLGAILGGAFVG-RLMGFYPVEAAITAGLCMANMGGTG 398 (438)
T ss_pred HHHHhhHHHHHHhhhhccccHHHHHHHh---chhHHHHHHHHHHHHHHHHHHHH-HHhcCCchHHHHHHhHHhcCCCCCC
Confidence 7776655 44444445558999987632 23455555555555555555443 1 1335344455557778999999
Q ss_pred cHHHHHHH
Q 048244 177 NYVAISEA 184 (413)
Q Consensus 177 N~vAv~~a 184 (413)
|..-++.+
T Consensus 399 DvaVLsAa 406 (438)
T COG3493 399 DVAVLSAA 406 (438)
T ss_pred chHHhhhc
Confidence 87655543
No 35
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=89.98 E-value=3.2 Score=45.33 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHhcc--cchHHHHhh-hhHHHHHHHHHHHHHHHHHHHHH-HHhccchhHHHHHhhccCCCcchHHHH
Q 048244 299 TLALVLMQVFFSVVGAS--GSIWNVINT-APSIFLFALVQVTVHLAIILGLG-KLFHFDLKLLLIASNANVGGPTTACGM 374 (413)
Q Consensus 299 ~lg~~ll~iffavIGa~--~~l~~~i~~-ap~l~l~~~i~l~iH~~~~l~~g-kLfk~~l~~~~iAS~AnIGGpaTA~a~ 374 (413)
.+..+.+-+|++++|.+ .++.+-+++ +-.+++.++++..+..++.+.++ |+||+|+.. ++-+--|+-|+.|++
T Consensus 448 ~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~G~~aG~~t~t~~l 524 (562)
T TIGR03802 448 LLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILPLIITMLIGKYVLKYDPAL---LLGALAGARTATPAL 524 (562)
T ss_pred HHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HHHHhhccCCCcHHH
Confidence 46667777899999966 345554555 67788888999888888888888 799999763 334445888888888
Q ss_pred hhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048244 375 ATTKGWGSLVVPGILAGIFGISMATFLGLGFGTTV 409 (413)
Q Consensus 375 Aaa~~w~~Lv~pgvL~GvlGyaiGtylGi~v~~~l 409 (413)
+.+.+-.+--.|.+=. ...|.+||.+=+.+++++
T Consensus 525 ~~a~~~~~~~~~~~gY-a~~Yp~~~i~~il~~~~i 558 (562)
T TIGR03802 525 GAVLERAGSSVPALGY-TITYALGNVLLTLLGPLI 558 (562)
T ss_pred HHHHHhcCCCCcccch-HhHHHHHHHHHHHHHHHH
Confidence 8876422111232111 123455555556667643
No 36
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=85.72 E-value=43 Score=33.89 Aligned_cols=153 Identities=19% Similarity=0.192 Sum_probs=83.9
Q ss_pred ChHHHHHHHHHHHHHHHH-Hhhccc--ccchhHHHHHHHHHHHHhhCCCCCCCChHHH-HHHHHHHHHHHHHHHHHhhHH
Q 048244 45 DHWGTWTALLVTGAFGLW-SEKTKL--GSMVSAALVSTLLGLAASNLGIIPYEAKAYA-VFLEFLLPLSIPLLLFRADLR 120 (413)
Q Consensus 45 ~~~~~~a~l~~~~a~~~~-~~k~~~--~~~l~~~vl~~l~~~~lsn~glip~~s~~y~-~v~~~llPlaI~LlLl~~Dlr 120 (413)
..|.....++..+..+-| .+|.|. +..+|+.+. +.+++..+..+.+-|.+- ..-..++=..|=.-.=+.++|
T Consensus 152 ~~~~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~----~a~~~~~~~~~~~~P~~l~~~aqv~iG~~iG~~f~~~~l~ 227 (318)
T PF05145_consen 152 MSWLWLALLALAALAGGLLARRLRIPAPWLLGPMLV----SAILNLFGGPSFSLPPWLVNAAQVLIGASIGSRFTRETLR 227 (318)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH----HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHccccHHHHH
Confidence 345555666666666666 776655 455666554 444444455444444332 222222223332222233334
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHhcccccCcchHHHHHHhhhccccccccHHHHHHHhCCChHHHHHHHHHH
Q 048244 121 RIVQSTGILLLAFLLGSVATTVGTL-VAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAAD 199 (413)
Q Consensus 121 ~i~k~~~~~L~~F~~gsvgtviG~~-va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~~~~~~aa~~aaD 199 (413)
+-+|.+..-+..++..+..+. .++.+-. +.+ +...-++-++==||=..|.++++.+|.+....++.-..=
T Consensus 228 ----~~~~~~~~~l~~~~~~l~~~~~~a~~l~~---~~~--~~~~t~~La~aPGGl~eM~l~A~~l~~d~~~V~~~q~~R 298 (318)
T PF05145_consen 228 ----ELRRLLPPALLSTLLLLALCALFAWLLSR---LTG--IDFLTALLATAPGGLAEMALIALALGADVAFVAAHQVVR 298 (318)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHC--CCHHHHHHHhCCccHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 444444444444443333333 3333321 111 225677888888999999999999999998888887775
Q ss_pred HHHHHHHHHHH
Q 048244 200 NVITAIYFMIL 210 (413)
Q Consensus 200 nv~~~~~~~~L 210 (413)
.+....-...+
T Consensus 299 l~~v~~~~p~~ 309 (318)
T PF05145_consen 299 LLFVLLLAPFI 309 (318)
T ss_pred HHHHHHHHHHH
Confidence 55544444333
No 37
>COG0679 Predicted permeases [General function prediction only]
Probab=85.56 E-value=42 Score=33.63 Aligned_cols=285 Identities=20% Similarity=0.194 Sum_probs=135.7
Q ss_pred hhHHHHHHHHHHHHhhCCCCCCCC--hHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 048244 72 VSAALVSTLLGLAASNLGIIPYEA--KAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFL 149 (413)
Q Consensus 72 l~~~vl~~l~~~~lsn~glip~~s--~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~~F~~gsvgtviG~~va~~ 149 (413)
+-+..+.+++|.++...|.++.++ ..-+.+..+.+|..++-.+-+.|.++. ++-+-....+....+.-..+..+..+
T Consensus 9 vlpi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (311)
T COG0679 9 VLPIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL-ADLGLIVASLVATLLAFFLLALIGRF 87 (311)
T ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447788999999999999999875 577889999999999999999998887 33333333333333333333333333
Q ss_pred HhcccccCcchHHHHHHhhhccccccccHH--HHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCC
Q 048244 150 LVPMRSLGTDSWKIASAFMGSYIGGSINYV--AISEALGVSPSVLAAGVAADNVITAIYFMILFTLASKIPPEASPANGT 227 (413)
Q Consensus 150 l~~~~~lg~~~wkiag~l~gsyiGGs~N~v--Av~~al~~~~~~~aa~~aaDnv~~~~~~~~L~~l~~~~~~~~~~~~~~ 227 (413)
.++ .+..|.. .+......+..++. ++.... ..++-++++...|.+....-+........+.... .+ .
T Consensus 88 ~~~----~~~~~~~--~~~~~~~~~N~g~lg~pi~~~~-~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~---~~-~ 156 (311)
T COG0679 88 LFK----LDKRETV--IFALASAFPNIGFLGLPVALSL-FGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGG---TN-K 156 (311)
T ss_pred Hhc----cchhhHH--HHHHHHHhcccchhhHHHHHHH-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ch-h
Confidence 332 1222322 23333333444443 344432 2234455544444433322222222221110000 00 0
Q ss_pred ccccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHH
Q 048244 228 EVDKESNSEDKTPVLQTATALAISFVICKTATYLSNLFGIQGGSLPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQV 307 (413)
Q Consensus 228 ~~~~~~~~~~~i~~~~~~~~lava~~i~~~~~~la~~l~~~~~~l~~itt~~vilat~~p~~~~~l~~~~~~lg~~ll~i 307 (413)
.....-++--+-|+ ..+..+++... ..+ ..+|- .+. +..+.+.++...+
T Consensus 157 ~~~~~~~~~~~nP~---i~a~i~g~~~~--------~~~---i~lP~------~~~----~~~~~l~~a~~pl------- 205 (311)
T COG0679 157 SLLSVLKKLLTNPL---IIALILGLLLN--------LLG---ISLPA------PLD----TAVDLLASAASPL------- 205 (311)
T ss_pred HHHHHHHHHHhCcH---HHHHHHHHHHH--------HcC---CCCcH------HHH----HHHHHHHHhhhhH-------
Confidence 00000000001111 11121222111 001 01111 000 1122222221122
Q ss_pred HHHHHhcccchHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHhccchhHHHHH-hhccCCCcchHHHHhhc-cCCCCch
Q 048244 308 FFSVVGASGSIWNVINTAPSIFLFALV-QVTVHLAIILGLGKLFHFDLKLLLIA-SNANVGGPTTACGMATT-KGWGSLV 384 (413)
Q Consensus 308 ffavIGa~~~l~~~i~~ap~l~l~~~i-~l~iH~~~~l~~gkLfk~~l~~~~iA-S~AnIGGpaTA~a~Aaa-~~w~~Lv 384 (413)
-+.++|++-+....-+..+.....+.. =+.+|=++.+..+++++++-++.-++ -.+..=-...+-.+|.. .++++++
T Consensus 206 ~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~la 285 (311)
T COG0679 206 ALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLVAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLA 285 (311)
T ss_pred HHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHH
Confidence 245667776653322233333333333 38899999999999999998866444 11122222334456665 4567777
Q ss_pred HHHHHHHHHHHHHHH
Q 048244 385 VPGILAGIFGISMAT 399 (413)
Q Consensus 385 ~pgvL~GvlGyaiGt 399 (413)
.-.+...++--.+-.
T Consensus 286 a~~i~ist~ls~~t~ 300 (311)
T COG0679 286 ASTILLSTLLSLLTL 300 (311)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777666555544
No 38
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=84.98 E-value=17 Score=41.36 Aligned_cols=93 Identities=15% Similarity=0.127 Sum_probs=63.7
Q ss_pred HHHHHHhhcccccchhHHHHHHHHHHHHhhC--CCCCCCC-----h-HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHH
Q 048244 58 AFGLWSEKTKLGSMVSAALVSTLLGLAASNL--GIIPYEA-----K-AYAVFLEFLLPLSIPLLLFRADLRRIVQSTGIL 129 (413)
Q Consensus 58 a~~~~~~k~~~~~~l~~~vl~~l~~~~lsn~--glip~~s-----~-~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~ 129 (413)
.+++..+..++.-++|.++++.++|+++.-. |.+++.. . ... +.+..++..++-.=++.|.+.+.|..+..
T Consensus 24 l~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~le-IteIvL~I~LFa~Gl~L~~~~Lrr~wrsV 102 (810)
T TIGR00844 24 IFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLE-ISRILLCLQVFAVSVELPRKYMLKHWVSV 102 (810)
T ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHhHHHH
Confidence 3344466667778899999999999999875 4454321 1 222 66777777777777888988888877664
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHh
Q 048244 130 LLA-FLLGSVATTVGTLVAFLLV 151 (413)
Q Consensus 130 L~~-F~~gsvgtviG~~va~~l~ 151 (413)
+.. +..-.+++++.+.++++++
T Consensus 103 ~rLl~~~M~lT~livAL~a~~Li 125 (810)
T TIGR00844 103 TMLLVPVMTSGWLVIALFVWILV 125 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 3344556666777777775
No 39
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=83.72 E-value=53 Score=33.26 Aligned_cols=134 Identities=20% Similarity=0.228 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHHHhhCCCCCCCC--hHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 048244 72 VSAALVSTLLGLAASNLGIIPYEA--KAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFL 149 (413)
Q Consensus 72 l~~~vl~~l~~~~lsn~glip~~s--~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~~F~~gsvgtviG~~va~~ 149 (413)
+=+.+++.++|.++...|+++.+. ...+.+..+.+|..++--+-+.|-.+ .-.+....+..+.+.++++..+++.
T Consensus 6 i~~i~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (385)
T PF03547_consen 6 ILPIFLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLE---DLLSLWFIPVFAFIIFILGLLLGFL 82 (385)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchh---hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 336778888999999999999863 46678888999988888888865322 2233445555556666666666666
Q ss_pred HhcccccCcchHHHHHHhhhccccccccH--HHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 048244 150 LVPMRSLGTDSWKIASAFMGSYIGGSINY--VAISEALGVSPSVLAAGVAADNVITAIYFMILFT 212 (413)
Q Consensus 150 l~~~~~lg~~~wkiag~l~gsyiGGs~N~--vAv~~al~~~~~~~aa~~aaDnv~~~~~~~~L~~ 212 (413)
+.+.. -.+..|+..-.++++ -+..++ .++.+++--+ +-.++....|.+....++.+...
T Consensus 83 ~~~~~-~~~~~~~~~~~~~~~--~~N~~~lglpi~~~l~g~-~~~~~~~~~~~~~~i~~~~~~~~ 143 (385)
T PF03547_consen 83 LSRLF-RLPKEWRGVFVLAAS--FGNTGFLGLPILQALFGE-RGVAYAIIFDVVNNIILWSLGYF 143 (385)
T ss_pred HHHhc-CCCcccceEEEeccc--CCcchhhHHHHHHHHhcc-hhhhhehHHHHhhHHHHHHHHHH
Confidence 64311 123334433223322 233333 5566655333 34444444544444444444433
No 40
>PRK04972 putative transporter; Provisional
Probab=83.64 E-value=6.3 Score=43.01 Aligned_cols=108 Identities=21% Similarity=0.216 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHHHHhcc--cchHHHHhh-hhHHHHHHHHHHHHHHHHHHHHH-HHhccchhHHHHHhhccCCCcchHHH
Q 048244 298 DTLALVLMQVFFSVVGAS--GSIWNVINT-APSIFLFALVQVTVHLAIILGLG-KLFHFDLKLLLIASNANVGGPTTACG 373 (413)
Q Consensus 298 ~~lg~~ll~iffavIGa~--~~l~~~i~~-ap~l~l~~~i~l~iH~~~~l~~g-kLfk~~l~~~~iAS~AnIGGpaTA~a 373 (413)
..+-.+-+-+|++++|.+ .++.+-+++ +-.+++.++++..+..++.+.++ |++|+|+.+. .-+--|+-|+.|+
T Consensus 442 ~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~~~~~---~G~~aG~~t~~~~ 518 (558)
T PRK04972 442 NMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRALL---FGAIMGARTCAPA 518 (558)
T ss_pred HHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH---HHHHhCCCCCcHH
Confidence 356666677799999976 345554555 56777888888888888888888 7999998843 3334577788888
Q ss_pred HhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048244 374 MATTKGWGSLVVPGILAGIFGISMATFLGLGFGTTV 409 (413)
Q Consensus 374 ~Aaa~~w~~Lv~pgvL~GvlGyaiGtylGi~v~~~l 409 (413)
++.+.+..+=-.|.+=.+ .-|.++|.+=+.+++++
T Consensus 519 l~~~~~~~~~~~~~~gYa-~~yp~~~il~~l~~~~i 553 (558)
T PRK04972 519 MEIISDTARSNIPALGYA-GTYAIANVLLTLAGTLI 553 (558)
T ss_pred HHHHHhhcCCCCcccccH-hHHHHHHHHHHHHHHHH
Confidence 888755333233332222 34777777777777754
No 41
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=82.21 E-value=6.7 Score=35.71 Aligned_cols=79 Identities=14% Similarity=0.149 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHHhcc--cchHHHHhh-h-hHHHHHHHHH-HHHHHHHHHHHHHHhccchhHHHHHhhccCCCcchHH
Q 048244 298 DTLALVLMQVFFSVVGAS--GSIWNVINT-A-PSIFLFALVQ-VTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTAC 372 (413)
Q Consensus 298 ~~lg~~ll~iffavIGa~--~~l~~~i~~-a-p~l~l~~~i~-l~iH~~~~l~~gkLfk~~l~~~~iAS~AnIGGpaTA~ 372 (413)
+.+..+.+-+|++++|.+ .++.+-+++ . ...+..+.++ +..+.+..+...|+||+|.. .++-+--|.-|+.|
T Consensus 53 ~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~---~~~G~~aGa~T~tp 129 (154)
T TIGR01625 53 LFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVAVALIKLLRINYA---LTAGMLAGATTNTP 129 (154)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH---HHHHHHhccccChH
Confidence 345666677799999976 445555655 3 3455554444 44455566666689999975 33444558889999
Q ss_pred HHhhccC
Q 048244 373 GMATTKG 379 (413)
Q Consensus 373 a~Aaa~~ 379 (413)
+++++.+
T Consensus 130 aL~aa~~ 136 (154)
T TIGR01625 130 ALDAAND 136 (154)
T ss_pred HHHHHHH
Confidence 9988764
No 42
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=81.27 E-value=85 Score=33.95 Aligned_cols=128 Identities=14% Similarity=0.145 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHH
Q 048244 52 ALLVTGAFGLWSEKTKLGSMVSAALVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLL 131 (413)
Q Consensus 52 ~l~~~~a~~~~~~k~~~~~~l~~~vl~~l~~~~lsn~glip~~s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~ 131 (413)
++++..+.....+|+ ++|.++.-++.|++++..+..|.-..--+.+....+|..++.-=++.|.|.++|..+..+.
T Consensus 6 l~~~~~~~~~l~~r~----~lP~~v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~ 81 (525)
T TIGR00831 6 LVMLATAVAVTVKFI----RLPYPIALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIAL 81 (525)
T ss_pred HHHHHHHHHHHhccc----CCCHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 333333334446665 5788888888888888765544311112355567778777777778999999988876554
Q ss_pred HHHHHH-HHHHHHHHHHHHHhcccccCcchHHHHHHhhhcccccccc--HHHHHHHhCCChH
Q 048244 132 AFLLGS-VATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSIN--YVAISEALGVSPS 190 (413)
Q Consensus 132 ~F~~gs-vgtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N--~vAv~~al~~~~~ 190 (413)
.=..++ +.+++++...+++.+ -.|. .+.+.|+-+.-+-- -.++-+..++|+.
T Consensus 82 la~~~vlit~~~v~~~~~~~~~------l~~~-~alllGails~TDpvav~~il~~~~~p~r 136 (525)
T TIGR00831 82 IAFLLVVVTTVVVGFSLNWILG------IPLA-LALILGAVLSPTDAVAVLGTFKSIRAPKK 136 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc------ccHH-HHHHHHHHhCCCCHHHHHHHHhcCCCCHH
Confidence 433443 344444555555432 1242 34444544443322 2344445577764
No 43
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=79.96 E-value=54 Score=35.49 Aligned_cols=108 Identities=12% Similarity=0.125 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHhhhccccccccHHH
Q 048244 101 FLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVA 180 (413)
Q Consensus 101 v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~~F~~gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vA 180 (413)
+.+.++|+.-...=++.|++.+.+...-.+...++..++=.+|+......++. --.+.+.+.-.++. .|-..++-
T Consensus 277 ~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~~~~~~g~--~~~~a~~~gl~l~~---~Gef~lii 351 (558)
T PRK10669 277 LRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFFLVRLFGH--SRRTALTIAASLAQ---IGEFAFIL 351 (558)
T ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--ChhhHHHHHHHHhc---ccchHHHH
Confidence 34667777766667789999988654444444444555556666666666642 12345544333322 35666655
Q ss_pred HHHHhC---CChHHHHHHHHHHHHHHHHHHHHHHHhc
Q 048244 181 ISEALG---VSPSVLAAGVAADNVITAIYFMILFTLA 214 (413)
Q Consensus 181 v~~al~---~~~~~~aa~~aaDnv~~~~~~~~L~~l~ 214 (413)
.+.+++ .+++.++..+.+ .+.+.+....++...
T Consensus 352 ~~~~~~~gii~~~~~~~~v~~-~~~t~~~~P~l~~~~ 387 (558)
T PRK10669 352 AGLGMALNLLPQAGQNLVLAG-AILSIMLNPVLFTLL 387 (558)
T ss_pred HHHHHhCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 444443 346777765555 667777777666553
No 44
>PRK03818 putative transporter; Validated
Probab=79.26 E-value=23 Score=38.65 Aligned_cols=95 Identities=20% Similarity=0.183 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHhcc--cchHHHH-hh-hhHHHHHHHHHHHHHHHHHHHHH-HHhccchhHHHHHhhccCCCcchHHH
Q 048244 299 TLALVLMQVFFSVVGAS--GSIWNVI-NT-APSIFLFALVQVTVHLAIILGLG-KLFHFDLKLLLIASNANVGGPTTACG 373 (413)
Q Consensus 299 ~lg~~ll~iffavIGa~--~~l~~~i-~~-ap~l~l~~~i~l~iH~~~~l~~g-kLfk~~l~~~~iAS~AnIGGpaTA~a 373 (413)
.+-.+-+-+|++++|.+ .++.+-+ ++ ...+++.++++..+..++.+.++ |+||+|+... .. +--|.-|+.|+
T Consensus 433 ~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~G--~~aG~~t~tp~ 509 (552)
T PRK03818 433 ALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVPLLIVGILARMLAKMNYLTL-CG--MLAGSMTDPPA 509 (552)
T ss_pred HHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HH--HHhccCCCcHH
Confidence 45556666799999976 3455543 43 57888888998888888888886 7899997633 23 33477777888
Q ss_pred HhhccCC--CCchHHHHHHHHHHHHHHHHHH
Q 048244 374 MATTKGW--GSLVVPGILAGIFGISMATFLG 402 (413)
Q Consensus 374 ~Aaa~~w--~~Lv~pgvL~GvlGyaiGtylG 402 (413)
++.+.+- ++-. | ..||++.-.+|
T Consensus 510 l~~a~~~~~~~~~-~-----~~gYa~~Yp~~ 534 (552)
T PRK03818 510 LAFANNLHPTSGA-A-----ALSYATVYPLV 534 (552)
T ss_pred HHHHhcccCCCCC-c-----ccchHHHHHHH
Confidence 8876552 2322 2 45665555555
No 45
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=77.89 E-value=9.5 Score=35.94 Aligned_cols=75 Identities=23% Similarity=0.263 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHHHHHHh--h---HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 048244 76 LVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRA--D---LRRIVQSTGILLLAFLLGSVATTVGTLVAFLL 150 (413)
Q Consensus 76 vl~~l~~~~lsn~glip~~s~~y~~v~~~llPlaI~LlLl~~--D---lr~i~k~~~~~L~~F~~gsvgtviG~~va~~l 150 (413)
+.+.+.|.++..+...|. +..|...+|.+.+.+++.=.+. | +|++++.++|.+..=+...+|+++|+.+...+
T Consensus 2 l~~li~Gi~lG~~~~~~~--~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~l 79 (191)
T PF03956_consen 2 LIALILGILLGYFLRPPF--SLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLL 79 (191)
T ss_pred eeeHHHHHHHHHHhcccc--cccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888777772 2337788888777766654442 2 46777899999988888899999999999888
Q ss_pred hc
Q 048244 151 VP 152 (413)
Q Consensus 151 ~~ 152 (413)
++
T Consensus 80 l~ 81 (191)
T PF03956_consen 80 LG 81 (191)
T ss_pred hc
Confidence 85
No 46
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=77.30 E-value=75 Score=31.65 Aligned_cols=135 Identities=16% Similarity=0.101 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHhhCCC-CCCC-ChHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 048244 73 SAALVSTLLGLAASNLGI-IPYE-AKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLL 150 (413)
Q Consensus 73 ~~~vl~~l~~~~lsn~gl-ip~~-s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~~F~~gsvgtviG~~va~~l 150 (413)
.|++++.++|.+++-.|+ +|.- .+.-+.+-+-..|+++..+=.+.+.+++.+..++.... ..+=.++.=.+++.+
T Consensus 182 nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~---~~~klil~P~i~~~~ 258 (321)
T TIGR00946 182 FPPLWAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILA---LIVRFLVQPAVMAGI 258 (321)
T ss_pred CCChHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHH---HHHHHHHHHHHHHHH
Confidence 588999999999999887 3431 44556777788888877777777777765433333222 222222222222222
Q ss_pred hcccccCcchHHHHHHhhhccccccccHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 048244 151 VPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFMILFT 212 (413)
Q Consensus 151 ~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~~~~~~aa~~aaDnv~~~~~~~~L~~ 212 (413)
...-.+.++..+..=..++.=. .+|-..+++.+|.+++.-+.++..-++.+.+-+.+...
T Consensus 259 ~~~~~l~~~~~~~~vl~aa~P~--a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~ 318 (321)
T TIGR00946 259 SKLIGLRGLELSVAILQAALPG--GAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFII 318 (321)
T ss_pred HHHhCCChHHHHHHHHHHcCCh--hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1101133444444433444433 45677889999999998888888877777666555443
No 47
>PRK04972 putative transporter; Provisional
Probab=77.28 E-value=14 Score=40.28 Aligned_cols=103 Identities=24% Similarity=0.330 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHhcc--cchHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhhccCCCcchHHHHh
Q 048244 299 TLALVLMQVFFSVVGAS--GSIWNVINT-APSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMA 375 (413)
Q Consensus 299 ~lg~~ll~iffavIGa~--~~l~~~i~~-ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~iAS~AnIGGpaTA~a~A 375 (413)
.+.++.+.+|+.++|.+ -++.+-++. +-.+.+.++++..+-.++.+.++|+||+|..+ +.-.--|+-|+.|+++
T Consensus 60 ~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~G~~aGa~T~tp~l~ 136 (558)
T PRK04972 60 DALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDIGL---TAGMLAGSMTSTPVLV 136 (558)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HHHHhhccccCcHHHH
Confidence 45677778899999976 345554554 66777788888888888888999999999653 3344447888888888
Q ss_pred hccC--CCCchHHHHHH-----HHHHHHHHHHHHHH
Q 048244 376 TTKG--WGSLVVPGILA-----GIFGISMATFLGLG 404 (413)
Q Consensus 376 aa~~--w~~Lv~pgvL~-----GvlGyaiGtylGi~ 404 (413)
++-. -+.-..+...- -..||++.-.+|+.
T Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~~vgYa~~y~~g~i 172 (558)
T PRK04972 137 GAGDTLRHSGAESRQLSLALDNLSLGYALTYLIGLV 172 (558)
T ss_pred HHHHHHhccCccccchhcccCccchhHHhHHHHHHH
Confidence 7653 11111000000 13688888777773
No 48
>COG2985 Predicted permease [General function prediction only]
Probab=76.33 E-value=23 Score=38.18 Aligned_cols=105 Identities=20% Similarity=0.245 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHHhcc--cchHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHH-HhccchhHHHHHhhccCCCcchHHH
Q 048244 298 DTLALVLMQVFFSVVGAS--GSIWNVIN-TAPSIFLFALVQVTVHLAIILGLGK-LFHFDLKLLLIASNANVGGPTTACG 373 (413)
Q Consensus 298 ~~lg~~ll~iffavIGa~--~~l~~~i~-~ap~l~l~~~i~l~iH~~~~l~~gk-Lfk~~l~~~~iAS~AnIGGpaTA~a 373 (413)
..+-.+.+-+|++++|.+ .++.+-+. ++-.+..+++++-.+-.++.++++| ++|+++.+. |-+-.|+-|.+|+
T Consensus 427 ~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~vp~i~~~llg~~v~kmn~~~l---~G~laGs~T~ppa 503 (544)
T COG2985 427 LALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLVPVIIVFLLGRYVLKMNWLLL---CGALAGSMTDPPA 503 (544)
T ss_pred HHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHH---hhHHhcCCCChHH
Confidence 456666777899999976 55666444 3568889999998888888888885 799998764 6677899999999
Q ss_pred HhhccCC--CCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048244 374 MATTKGW--GSLVVPGILAGIFGISMATFLGLGFGTT 408 (413)
Q Consensus 374 ~Aaa~~w--~~Lv~pgvL~GvlGyaiGtylGi~v~~~ 408 (413)
++.+-+- .+ .|++=.+.- |.+++++=+..+++
T Consensus 504 La~and~~~~~--~~AlgYatv-YPlAm~l~il~~qi 537 (544)
T COG2985 504 LAFANDAARTD--APALGYATT-YPLAMFLMILAAQI 537 (544)
T ss_pred HHHHhhcccCc--chhcccchH-hHHHHHHHHHHHHH
Confidence 9986332 34 443322221 45666666666664
No 49
>PRK09903 putative transporter YfdV; Provisional
Probab=76.19 E-value=87 Score=31.21 Aligned_cols=53 Identities=19% Similarity=0.259 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHhhCCCCCCC--ChHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 048244 72 VSAALVSTLLGLAASNLGIIPYE--AKAYAVFLEFLLPLSIPLLLFRADLRRIVQ 124 (413)
Q Consensus 72 l~~~vl~~l~~~~lsn~glip~~--s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k 124 (413)
+=+..+.+++|.++...|.+|++ ...-+.+....+|..++..+-+.|.+....
T Consensus 9 ilpif~ii~lG~~~~r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~ 63 (314)
T PRK09903 9 LLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFA 63 (314)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 44677888999999999999975 456678999999999999999988766653
No 50
>PRK03818 putative transporter; Validated
Probab=74.58 E-value=18 Score=39.38 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHhccc--chHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhhccCCCcchHHHHh
Q 048244 299 TLALVLMQVFFSVVGASG--SIWNVINT-APSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMA 375 (413)
Q Consensus 299 ~lg~~ll~iffavIGa~~--~l~~~i~~-ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~iAS~AnIGGpaTA~a~A 375 (413)
.+.++.+-+|..++|.++ ++.+-+++ +-.+.+.++++..+-.++.+.+.|+||+|..+ +.-.--|+-|+.|+++
T Consensus 61 ~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~G~~aGa~T~tp~l~ 137 (552)
T PRK03818 61 FIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIPLPV---MLGIFSGAVTNTPALG 137 (552)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HHHHhhccccccHHHH
Confidence 467777888999999763 45454555 55667777777777777788889999999652 3333448888889888
Q ss_pred hcc
Q 048244 376 TTK 378 (413)
Q Consensus 376 aa~ 378 (413)
++.
T Consensus 138 aa~ 140 (552)
T PRK03818 138 AGQ 140 (552)
T ss_pred HHH
Confidence 865
No 51
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=73.83 E-value=92 Score=30.39 Aligned_cols=109 Identities=16% Similarity=0.009 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHhh--hhhhhccccchhHHHHHHHHHHHHHHhcc--cchHHH
Q 048244 246 TALAISFVICKTATYLSNLFGIQGGSLPGVTAIVVILATLL--PKQFSYLAPAGDTLALVLMQVFFSVVGAS--GSIWNV 321 (413)
Q Consensus 246 ~~lava~~i~~~~~~la~~l~~~~~~l~~itt~~vilat~~--p~~~~~l~~~~~~lg~~ll~iffavIGa~--~~l~~~ 321 (413)
+.+.+......+++++.+..+.+..--|.+.+..++++... ..+.+..+.+++ +=++++----+..+.+ .+.+.+
T Consensus 11 ~~l~lTl~~y~~~~~l~~r~~~~~~lnPll~s~~~ii~~L~~~~i~Y~~Y~~g~~-~l~~lLgPAtVALAvPLY~q~~~l 89 (232)
T PRK04288 11 FGILVSLIAFGIGTILFKKSKGFFLFTPLFVAMVLGIAFLKLTGISYEEYNIGGD-IISFFLEPATIAFAIPLYKKRDVL 89 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHhCCCHHHHHhhhH-HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45666777778888888766322223344444433333322 222333322222 2222222222333322 445554
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 048244 322 INTAPSIFLFALVQVTVHLAIILGLGKLFHFDLK 355 (413)
Q Consensus 322 i~~ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l~ 355 (413)
-+....+++-+++-..+.+.....++|+|+.|.+
T Consensus 90 k~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~ 123 (232)
T PRK04288 90 KKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA 123 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH
Confidence 3445677777777788888888999999999965
No 52
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=72.61 E-value=98 Score=30.17 Aligned_cols=152 Identities=20% Similarity=0.160 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHH--HHHhhhhhhhccccchhHHHHHHHHHHHHHHhcc--cchHH
Q 048244 245 ATALAISFVICKTATYLSNLFGIQGGSLPGVTAIVVI--LATLLPKQFSYLAPAGDTLALVLMQVFFSVVGAS--GSIWN 320 (413)
Q Consensus 245 ~~~lava~~i~~~~~~la~~l~~~~~~l~~itt~~vi--lat~~p~~~~~l~~~~~~lg~~ll~iffavIGa~--~~l~~ 320 (413)
-+.+.++.....++.++.+..+.+--. |.+.+..++ +...+..+.+....+++ .=++++.-=-+..+.+ -+.+.
T Consensus 8 ~f~l~lTl~~y~~a~~l~~r~~~~~l~-PlLv~~~~li~~L~~~~i~Y~~Y~~g~~-~i~~lLgPAtVAlAvPLYkq~~~ 85 (230)
T COG1346 8 LFGLLLTLLAYFAAKRLYKRTKSPFLN-PLLVATVLLIAFLLLFGISYEDYMKGGQ-WINFLLGPATVALAVPLYKQRHL 85 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccc-hHHHHHHHHHHHHHHcCCCHHHHhcccH-HHHHHHHHHHHHHhhHHHHHHHH
Confidence 455667777788888888776543222 443333233 33333333444433333 4455554422222222 33444
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhhccCCCcchHHHHhhc--cC-CCCchHH-HHHHHHHHHH
Q 048244 321 VINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMATT--KG-WGSLVVP-GILAGIFGIS 396 (413)
Q Consensus 321 ~i~~ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~iAS~AnIGGpaTA~a~Aaa--~~-w~~Lv~p-gvL~GvlGya 396 (413)
+-+..+.++.-+++--.+.++...+++|+|++|.+ .+.|.+-- -.||+-+|.-+ .| -|++... -++.|++|++
T Consensus 86 ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~--~~~Sl~Pk-SvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gav 162 (230)
T COG1346 86 IKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPE--LILSLLPK-SVTTPIAMEVSESIGGIPALTAVFVILTGILGAV 162 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHhccc-ccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 33346677766777777888888999999999944 44444421 23444444443 33 2444433 3567888888
Q ss_pred HHHHH
Q 048244 397 MATFL 401 (413)
Q Consensus 397 iGtyl 401 (413)
+|..+
T Consensus 163 lg~~l 167 (230)
T COG1346 163 LGPLL 167 (230)
T ss_pred HHHHH
Confidence 88653
No 53
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=72.59 E-value=23 Score=38.76 Aligned_cols=40 Identities=30% Similarity=0.416 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhhccccc-chhHHHHHHHHHHHHhhCCC
Q 048244 51 TALLVTGAFGLWSEKTKLGS-MVSAALVSTLLGLAASNLGI 90 (413)
Q Consensus 51 a~l~~~~a~~~~~~k~~~~~-~l~~~vl~~l~~~~lsn~gl 90 (413)
-.++...++|++.-|.|++. .+|++--+++.+.++..+|.
T Consensus 13 l~lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~ 53 (562)
T TIGR03802 13 IALFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGI 53 (562)
T ss_pred HHHHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCC
Confidence 34666888999988999864 47777788999999999986
No 54
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=70.61 E-value=1.2e+02 Score=30.24 Aligned_cols=99 Identities=18% Similarity=0.107 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH-hhccCCCcchHHHHhhc
Q 048244 299 TLALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIA-SNANVGGPTTACGMATT 377 (413)
Q Consensus 299 ~lg~~ll~iffavIGa~~~l~~~i~~ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~iA-S~AnIGGpaTA~a~Aaa 377 (413)
.+|....-+-+.++|++-+..+.-.+.+......++=+.+|=++.+++.+++++|.++.-+. -+|..==+.++.++|..
T Consensus 211 ~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~ 290 (321)
T TIGR00946 211 ILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVMAGISKLIGLRGLELSVAILQAALPGGAVAAVLATE 290 (321)
T ss_pred HHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHHHHHH
Confidence 45555555556777877666554233355555666678889999999999999987665444 34444444567788888
Q ss_pred cCC-CCchHHHHHHHHHHHHH
Q 048244 378 KGW-GSLVVPGILAGIFGISM 397 (413)
Q Consensus 378 ~~w-~~Lv~pgvL~GvlGyai 397 (413)
+|- ++++.-.+..+++-..+
T Consensus 291 y~~~~~~aa~~v~~sT~ls~~ 311 (321)
T TIGR00946 291 YEVDVELASTAVTLSTVLSLI 311 (321)
T ss_pred hCCCHHHHHHHHHHHHHHHHH
Confidence 774 56666666666554443
No 55
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=70.16 E-value=1.4e+02 Score=31.02 Aligned_cols=148 Identities=21% Similarity=0.131 Sum_probs=80.4
Q ss_pred CChHHHHHHHHHHHHHHHH-Hhhc-cc----ccchhHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 048244 44 NDHWGTWTALLVTGAFGLW-SEKT-KL----GSMVSAALVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRA 117 (413)
Q Consensus 44 ~~~~~~~a~l~~~~a~~~~-~~k~-~~----~~~l~~~vl~~l~~~~lsn~glip~~s~~y~~v~~~llPlaI~LlLl~~ 117 (413)
.|....+++-++..+++.+ .+.. ++ .+..-.+++...++.+.+-....... +--+.+-++++.+-+...=.++
T Consensus 206 ~~l~~~la~a~~v~~~s~~la~~l~~~~~~~~~~~~~il~~tt~~l~~~~~~~~~~l-~g~~~lg~~lly~ffa~IGa~a 284 (378)
T PF05684_consen 206 QDLAFLLAVAFAVVALSHALAAWLPPLFAGISSSTWLILTVTTLGLATSFPPFRKLL-RGASELGTFLLYLFFAVIGASA 284 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhccchhhcC-CchHHHHHHHHHHHHHHHcccc
Confidence 4555566666666777777 4444 22 23333445555555555433332222 2223466777777777777789
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHhcccccCcchHHHHHHhhhccccccccHHHHHHHhCCChHHHHHHH
Q 048244 118 DLRRIVQSTGILLLAFLLGSVATTVGTL-VAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGV 196 (413)
Q Consensus 118 Dlr~i~k~~~~~L~~F~~gsvgtviG~~-va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~~~~~~aa~~ 196 (413)
|++++.+ ++. +..|..-.+.+=+... ....+++. | +.-..-=+=..|||-.--.+++.+.| +++..-++
T Consensus 285 ~i~~l~~-ap~-~~l~~~i~l~iH~~l~l~~~kl~k~----~--l~~~~vAS~AnIGGpaTA~a~A~a~~--~~Lv~pgv 354 (378)
T PF05684_consen 285 DISELLD-APS-LFLFGFIILAIHLLLMLILGKLFKI----D--LFELLVASNANIGGPATAPAVAAAKG--PSLVPPGV 354 (378)
T ss_pred CHHHHHH-hHH-HHHHHHHHHHHHHHHHHHHHHHHCC----C--HHHHHHHhhcccCCcchHHHHHHhcC--CccHHHHH
Confidence 9999998 544 4444433332222222 22234431 1 11112222346899999999999999 45555555
Q ss_pred HHHHHH
Q 048244 197 AADNVI 202 (413)
Q Consensus 197 aaDnv~ 202 (413)
..-++-
T Consensus 355 L~gvlG 360 (378)
T PF05684_consen 355 LMGVLG 360 (378)
T ss_pred HHHHHH
Confidence 443433
No 56
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=69.60 E-value=85 Score=28.22 Aligned_cols=75 Identities=15% Similarity=0.220 Sum_probs=57.2
Q ss_pred HHHHhcccc---hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhhccCCCcchHHHHhhccCCCCchH
Q 048244 309 FSVVGASGS---IWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTACGMATTKGWGSLVV 385 (413)
Q Consensus 309 favIGa~~~---l~~~i~~ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~iAS~AnIGGpaTA~a~Aaa~~w~~Lv~ 385 (413)
=..+|..-+ ++++.+..+..+......+.+....-+.+.|+.++|..+...++ .-||.+.-.++|...| -|...
T Consensus 57 G~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~La~--~PGGl~~m~~~A~~~g-ad~~~ 133 (156)
T TIGR03082 57 GILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDPLTAFLAT--SPGGASEMAALAAELG-ADVAF 133 (156)
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHh--CCchHHHHHHHHHHhC-CCHHH
Confidence 466776644 44444456667777778888888889999999999999999984 5699999999999887 55443
Q ss_pred H
Q 048244 386 P 386 (413)
Q Consensus 386 p 386 (413)
+
T Consensus 134 V 134 (156)
T TIGR03082 134 V 134 (156)
T ss_pred H
Confidence 3
No 57
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=64.88 E-value=1.4e+02 Score=29.00 Aligned_cols=110 Identities=14% Similarity=0.069 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHhh--hhhhhccccchhHHHHHHHHHHHHHHhcc--cchH
Q 048244 244 TATALAISFVICKTATYLSNLFGIQGGSLPGVTAIVVILATLL--PKQFSYLAPAGDTLALVLMQVFFSVVGAS--GSIW 319 (413)
Q Consensus 244 ~~~~lava~~i~~~~~~la~~l~~~~~~l~~itt~~vilat~~--p~~~~~l~~~~~~lg~~ll~iffavIGa~--~~l~ 319 (413)
+-+.+.+.......++++.+..+. ..--|.+++..++++... ..+.++...+++ +=++++----+..+.+ .+.+
T Consensus 4 ~~~~l~lTl~~y~~~~~l~~r~~~-~~lnPvl~~~~~ii~~L~~~~i~Y~~Y~~g~~-~l~~lLgPAtVALAvPLY~~~~ 81 (226)
T TIGR00659 4 IIVSLFLTLLVFFGAKKLYQRFKR-PYLNPLLLTPLVLVGILLLVGIPYESYMLGGG-VINDLLGPAVVALAIPLYKQLP 81 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCC-ccccHHHHHHHHHHHHHHHhCCCHHHHHHhhH-HHHHhhHHHHHHHHHHHHHhHH
Confidence 445566677777778887765542 222344444434333332 112233322222 1222222222223322 4455
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 048244 320 NVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLK 355 (413)
Q Consensus 320 ~~i~~ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l~ 355 (413)
.+-+..+.++.-+.+-..+++.....++|+|++|.+
T Consensus 82 ~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~ 117 (226)
T TIGR00659 82 QIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPE 117 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH
Confidence 544446677777777778888999999999999954
No 58
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=64.26 E-value=32 Score=32.38 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHhccc--c---hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhhccCCCcchHH
Q 048244 298 DTLALVLMQVFFSVVGASG--S---IWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGPTTAC 372 (413)
Q Consensus 298 ~~lg~~ll~iffavIGa~~--~---l~~~i~~ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~iAS~AnIGGpaTA~ 372 (413)
++..+..+|++...+|.+- | ++++-+-.+-.++..+..+...++.-++.+++++.++.|.+
T Consensus 23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll~~~~~~~l-------------- 88 (191)
T PF03956_consen 23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLLGLSLKESL-------------- 88 (191)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH--------------
Confidence 4578888888888888662 2 22333346778888889999999999999999999988754
Q ss_pred HHhhccCCCCchHH
Q 048244 373 GMATTKGWGSLVVP 386 (413)
Q Consensus 373 a~Aaa~~w~~Lv~p 386 (413)
++++.+||=+|-.|
T Consensus 89 av~sG~GwYSlsg~ 102 (191)
T PF03956_consen 89 AVASGFGWYSLSGV 102 (191)
T ss_pred HHHccCcHHHhHHH
Confidence 67889999998765
No 59
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=59.67 E-value=20 Score=36.59 Aligned_cols=106 Identities=13% Similarity=0.103 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcccchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccch----hHHHHHhhccCCCcchHHHHhhccC
Q 048244 304 LMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDL----KLLLIASNANVGGPTTACGMATTKG 379 (413)
Q Consensus 304 ll~iffavIGa~~~l~~~i~~ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l----~~~~iAS~AnIGGpaTA~a~Aaa~~ 379 (413)
++=.+....|..-|++++....+.=++.....+.++..+.....|+|+-+. ...+.++-++|.||+-.++....++
T Consensus 204 lLp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~Rl~~~~~g~~g~a~~ttaG~aic~pAAvaa~~p~~~ 283 (326)
T PRK05274 204 LIPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLADRLIGGGNGVAGAAAGSTAGNAVATPAAVAAADPSFA 283 (326)
T ss_pred EHHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHhheeecCCCcchHHHHHHHHHHHHHHHHHHhhccccc
Confidence 333444558999999998777766666666777777777777889997655 5777888888999887776666654
Q ss_pred -CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 048244 380 -WGSLVVPGILAGIFGISMATFLGLGFGTTVLKH 412 (413)
Q Consensus 380 -w~~Lv~pgvL~GvlGyaiGtylGi~v~~~ll~~ 412 (413)
..+-....+...++ +..++.-.+..++.||
T Consensus 284 ~~~~~at~~VA~~vi---vt~il~P~l~~~~~k~ 314 (326)
T PRK05274 284 PFAPAATAQVAAAVI---VTAILAPILTAWWSKR 314 (326)
T ss_pred cchHhHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 12233333444444 6666666666666665
No 60
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=58.51 E-value=34 Score=34.97 Aligned_cols=76 Identities=20% Similarity=0.089 Sum_probs=52.8
Q ss_pred HHhhcccccchhHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHH
Q 048244 62 WSEKTKLGSMVSAALVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVAT 140 (413)
Q Consensus 62 ~~~k~~~~~~l~~~vl~~l~~~~lsn~glip~~s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~~F~~gsvgt 140 (413)
+..++++...++.. +.+++|+.+.|+ -+.-.+..+.-.++++|..++++=++.|++++.+.|.+-++....-++.+
T Consensus 164 gla~~p~~~li~al-lplliG~~lgnl--~~~l~~~~~~Gi~~lLp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t 239 (326)
T PRK05274 164 GLASFPPPALVGAV-LPLLVGFILGNL--DPELRQFLGKAVPVLIPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVT 239 (326)
T ss_pred CcccCCCchhhHHH-HHHHHHHHHHhH--HHhhHHHhcCCcEEEHHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhcc
Confidence 35667777666655 999999999993 22111222222333999999999999999999999988666655544444
No 61
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=58.33 E-value=29 Score=35.46 Aligned_cols=71 Identities=17% Similarity=0.132 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhcccchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH--hhccCCCcch
Q 048244 300 LALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIA--SNANVGGPTT 370 (413)
Q Consensus 300 lg~~ll~iffavIGa~~~l~~~i~~ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~iA--S~AnIGGpaT 370 (413)
+--.+.-.||..+|+..|-...+++--....--.+++.+.-+.-+.+-|.|+.+..+.+.. |.||||-=+.
T Consensus 277 LrdaFaVlFFvsVGmlf~P~~l~~~pl~vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsf 349 (408)
T COG4651 277 LRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSF 349 (408)
T ss_pred HHHHHHHHHHHHhhhhcCcHHhhcchHHHHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHH
Confidence 3445666789999999998887665545555566777888888889999999999887775 8999996554
No 62
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=57.31 E-value=1.6e+02 Score=28.52 Aligned_cols=161 Identities=20% Similarity=0.257 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhCCCCCC--CChHHHH--HH-------HHHHHHHHHHHHHH
Q 048244 48 GTWTALLVTGAFGLWSEKTKLGSMVSAALVSTLLGLAASNLGIIPY--EAKAYAV--FL-------EFLLPLSIPLLLFR 116 (413)
Q Consensus 48 ~~~a~l~~~~a~~~~~~k~~~~~~l~~~vl~~l~~~~lsn~glip~--~s~~y~~--v~-------~~llPlaI~LlLl~ 116 (413)
.-+++.=...-++.|..|+--+.++.+.-++++++.+++..|-.-+ +.-+-|. +. ..+=-.+|.---+.
T Consensus 16 ~aFa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~gG~~TgG~kGlaDi~lfsGiglmGGaMlRDfAIvaTAf~ 95 (254)
T TIGR00808 16 TAFAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVGGVYTGGEKGLADIAIFGGFGLMGGAMLRDLAIVATAFE 95 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHcccccCCccccchhhhhcchhhhhhHHHHHHHHHHHhhc
Confidence 3344433344446664444334566677788899999999977654 2212220 00 11112466667789
Q ss_pred hhHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHhcccccCcchHHHHHHhhhccccccccHHHHHHHhCCChHHHHHH
Q 048244 117 ADLRRIVQSTGILLLAFLLGSV-ATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAG 195 (413)
Q Consensus 117 ~Dlr~i~k~~~~~L~~F~~gsv-gtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~~~~~~aa~ 195 (413)
+|.++++|.|-.-..+.++|++ ..++|+.+++.. +.+ .+.+-.-.|+=+-+||=|-+. ..++|.|+|..+..
T Consensus 96 v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~af-GY~--DavS~tTIGAGAvTyIVGPVT----GaAiGAsS~ViALS 168 (254)
T TIGR00808 96 VDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAF-GYR--DAVSMTTIGAGAVTYIVGPVT----GAAVGASSEVIALS 168 (254)
T ss_pred CcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHH-cCC--CchhheeeccceEEEEecCcc----chhccCCcchHHHH
Confidence 9999999999776666666654 666777777655 222 111112233334456655543 45678888888888
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 048244 196 VAADNVITAIYFMILFTLAS 215 (413)
Q Consensus 196 ~aaDnv~~~~~~~~L~~l~~ 215 (413)
+++..+=...-|...-..++
T Consensus 169 IA~GlvKai~vMv~TP~~A~ 188 (254)
T TIGR00808 169 IAIGLIKAILVMVGTPLLAK 188 (254)
T ss_pred HHHhHHHHHhheeccHHHHh
Confidence 88866655555544444444
No 63
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=55.42 E-value=2.5e+02 Score=28.77 Aligned_cols=74 Identities=16% Similarity=0.074 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHH----HHHHHHhccchhHH-HHH---hhccCCCcchHHHHhhccCC-CCchHHHHHHHHHHHHHHHHH
Q 048244 331 FALVQVTVHLAII----LGLGKLFHFDLKLL-LIA---SNANVGGPTTACGMATTKGW-GSLVVPGILAGIFGISMATFL 401 (413)
Q Consensus 331 ~~~i~l~iH~~~~----l~~gkLfk~~l~~~-~iA---S~AnIGGpaTA~a~Aaa~~w-~~Lv~pgvL~GvlGyaiGtyl 401 (413)
.+++.+.+|..+. ...+|++|+|.++- .++ ++=| -+.+.+||.++-- +..+.|+.+..++....|..+
T Consensus 224 ~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn---~~lg~alA~~f~~~~~~alP~aif~~~q~~~~a~l 300 (319)
T COG0385 224 LIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQN---LGLGAALAAAFFGNPLMALPLAIFSVWQNMSGAVL 300 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeecccc---HHHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3444455555544 45779999997653 333 3333 3467778887443 789999999999999998887
Q ss_pred HHHHHH
Q 048244 402 GLGFGT 407 (413)
Q Consensus 402 Gi~v~~ 407 (413)
+-..+.
T Consensus 301 a~~~~~ 306 (319)
T COG0385 301 AGLYAR 306 (319)
T ss_pred HHHHHh
Confidence 766554
No 64
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=54.52 E-value=2.6e+02 Score=28.83 Aligned_cols=271 Identities=18% Similarity=0.144 Sum_probs=134.8
Q ss_pred HHHHHHHHHH-HhhcccccchhHHHHHHHHHHHHhhCC-----CCCCC---ChHHH-HHHHHHHHHHHHHHHHH-hhHHH
Q 048244 53 LLVTGAFGLW-SEKTKLGSMVSAALVSTLLGLAASNLG-----IIPYE---AKAYA-VFLEFLLPLSIPLLLFR-ADLRR 121 (413)
Q Consensus 53 l~~~~a~~~~-~~k~~~~~~l~~~vl~~l~~~~lsn~g-----lip~~---s~~y~-~v~~~llPlaI~LlLl~-~Dlr~ 121 (413)
++.++.+-+| .-| +++=|-.++=+-.+++++|.- ....+ .+.|+ .+.+-+.|..|++=.=. .|..-
T Consensus 5 Mi~ig~~LiYLai~---k~~EPlLLiPigfG~il~NiP~~~~g~~~~gg~l~~~~~~gi~~~l~P~LIFlGIGAmtDFgp 81 (354)
T TIGR01109 5 MLLVSLLLLYLAIA---KKFEPLLLIPIGFGGILSNIPEAGLGLTAEGGILALFYKVGIGSGIAPLLIFMGIGALTDFGP 81 (354)
T ss_pred hHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhcCCccccccccCCchHHHHHHHHHhcchHHHHHHHhccHHhhhHH
Confidence 4445555556 333 355677788899999999972 22211 13444 46666777766654322 68877
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccC-cchHHHHHHhhhccccccccHHHHHHHhCCChHHHHHHHHHHH
Q 048244 122 IVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLG-TDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADN 200 (413)
Q Consensus 122 i~k~~~~~L~~F~~gsvgtviG~~va~~l~~~~~lg-~~~wkiag~l~gsyiGGs~N~vAv~~al~~~~~~~aa~~aaDn 200 (413)
++.. ||.++.=..+=+|+.+-.+.+..+ +.. .+ +..-|= +-+-..|||.-.=.++=-+....+++++.-.++
T Consensus 82 llan-P~~~llGaaAQ~GiF~t~~~A~~l-Gf~-~~~~~~~~e--AAsIgIIGgADGPt~If~s~~lap~Llg~IaVA-- 154 (354)
T TIGR01109 82 LLAN-PRTLLLGAAAQFGIFATVFGALTL-NFF-GIISFSLPQ--AAAIGIIGGADGPTAIYLSGKLAPELLAAIAVA-- 154 (354)
T ss_pred HHhC-hHHHHHHHHHHhhHHHHHHHHHHh-CCC-cccccChhh--ceeeeeeccCCCchhhhhHhhhhhHHHHHHHHH--
Confidence 7743 343222222233444433333333 210 00 000111 122346888766666666666667777764433
Q ss_pred HHHHHHHHHHHHhcccCCCCCC--CCCCCc-cccccCCCCCCChH-HHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHH
Q 048244 201 VITAIYFMILFTLASKIPPEAS--PANGTE-VDKESNSEDKTPVL-QTATALAISFVICKTATYLSNLFGIQGGSLPGVT 276 (413)
Q Consensus 201 v~~~~~~~~L~~l~~~~~~~~~--~~~~~~-~~~~~~~~~~i~~~-~~~~~lava~~i~~~~~~la~~l~~~~~~l~~it 276 (413)
...||...-.+ +|+..| .++.|+ ...++ .++++.. .+.+.+.+....+.+ +| .+.|.+.
T Consensus 155 --AYsYMaLvPii---qPpimklLttkkeR~I~M~~--~r~Vsk~eKi~Fpivv~~i~~ll-------~P---~a~pLig 217 (354)
T TIGR01109 155 --AYSYMALVPII---QPPIMKALTSEKERKIRMKQ--LRTVSKREKILFPIVLLLLVALL-------IP---KALPLVG 217 (354)
T ss_pred --HHHHHHHHhcc---cchHHHhhcChHHhccccCC--CCCcCccchhHHHHHHHHHHHHH-------cc---chHHHHH
Confidence 55676555433 344333 111111 11111 1122211 233333332222211 11 1222222
Q ss_pred HHHHHHHHhhhh--hhhcccc-chhHHHHHHHHHHHHHHhcccchHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 048244 277 AIVVILATLLPK--QFSYLAP-AGDTLALVLMQVFFSVVGASGSIWNVINT-APSIFLFALVQVTVHLAIILGLGKLFHF 352 (413)
Q Consensus 277 t~~vilat~~p~--~~~~l~~-~~~~lg~~ll~iffavIGa~~~l~~~i~~-ap~l~l~~~i~l~iH~~~~l~~gkLfk~ 352 (413)
.+ -+-+++.+ ..+|+.. .++++-+....++=.++|++++-..+++. .-.++..+.+-..+....=.+++|++++
T Consensus 218 ~L--m~GnllrEsGv~~rl~~taqn~l~nivTifLGl~vG~~~~A~~fL~~~tl~Il~LG~~Af~~~tagGvl~aklmn~ 295 (354)
T TIGR01109 218 ML--MFGNLMRESGVVERLSKTASNELLNIVTILLGLSVGAKMRADKFLTPQTLGILLLGVVAFAVATAGGVLMAKLMNL 295 (354)
T ss_pred HH--HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22 12222221 1234432 23345555555567788999998888764 5577778888888887777888888653
No 65
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=53.78 E-value=3e+02 Score=31.68 Aligned_cols=110 Identities=15% Similarity=0.245 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHhhhccccc
Q 048244 98 YAVFLEFLLPLSIPLLLFRADLRRIVQSTGI---LLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGG 174 (413)
Q Consensus 98 y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~---~L~~F~~gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGG 174 (413)
-+.+.++++|+-....=++.|++.+. .... .+...+++.++=++|+.++..++++. ..|+..+...+. .-|
T Consensus 320 e~~~~~lflPlFFv~vGl~idl~~l~-~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~--~~eal~lG~lm~---~kG 393 (832)
T PLN03159 320 EDFVSGLLLPLFFAISGLKTNVTKIQ-GPATWGLLVLVIIMASAGKIMGTIIIAFFYTMP--FREGITLGFLMN---TKG 393 (832)
T ss_pred HHHHHHHHHHHHHHHhhheeeHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHh---ccc
Confidence 34667888888888888899998763 2221 22334455667777888777776421 234443322222 225
Q ss_pred cccHHHHHHHhC---CChHHHHHHHHHHHHHHHHHHHHHHHh
Q 048244 175 SINYVAISEALG---VSPSVLAAGVAADNVITAIYFMILFTL 213 (413)
Q Consensus 175 s~N~vAv~~al~---~~~~~~aa~~aaDnv~~~~~~~~L~~l 213 (413)
-.-++...-+++ .+++.++..+.+=.+.+.+.-.++..+
T Consensus 394 ~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~l 435 (832)
T PLN03159 394 LVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVV 435 (832)
T ss_pred HHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 555544433333 346677776544234444444444443
No 66
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=51.34 E-value=1.8e+02 Score=26.05 Aligned_cols=76 Identities=22% Similarity=0.226 Sum_probs=48.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHhhhccccccccHHHHHHHhCCChHHHHHHHHHHHHH
Q 048244 123 VQSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVI 202 (413)
Q Consensus 123 ~k~~~~~L~~F~~gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~~~~~~aa~~aaDnv~ 202 (413)
+++-+|.....+..++.+++-+.+..+++. +..+ |...-++-++-=||-.-|.++++.+|.++...+..-..=.+.
T Consensus 69 l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~-~~~~---~~~~ta~La~~PGGl~~m~~~A~~~gad~~~V~~~q~~Rl~~ 144 (156)
T TIGR03082 69 LAELKRLWPAALLSTVLLLALSALLAWLLA-RLTG---VDPLTAFLATSPGGASEMAALAAELGADVAFVAAMQTLRLLF 144 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHC---CCHHHHHHHhCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 344445555555555555444444433332 2111 234566788899999999999999999998888776664443
No 67
>PRK10711 hypothetical protein; Provisional
Probab=50.58 E-value=2.5e+02 Score=27.39 Aligned_cols=137 Identities=16% Similarity=0.195 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHh--hhhhhhccccchhHHHHHHHHHHHHHHhcc--cchHHHHhhhh
Q 048244 251 SFVICKTATYLSNLFGIQGGSLPGVTAIVVILATL--LPKQFSYLAPAGDTLALVLMQVFFSVVGAS--GSIWNVINTAP 326 (413)
Q Consensus 251 a~~i~~~~~~la~~l~~~~~~l~~itt~~vilat~--~p~~~~~l~~~~~~lg~~ll~iffavIGa~--~~l~~~i~~ap 326 (413)
......+++++.+..+.+ ..-|.+++..++++.. ...+.++...+++.+ ++++----+..+.+ .+...+-+..+
T Consensus 12 Tl~~y~~~~~l~~k~~~~-~l~Pll~s~~~ii~~L~~~~i~Y~~Y~~g~~~l-~~lLgPAtVALAvPLY~q~~~lk~~~~ 89 (231)
T PRK10711 12 TLIVFFAARKLAARFKFP-LLNPLLVAMVVIIPFLLLTGIPYEHYFKGSEVL-NDLLQPAVVALAFPLYEQLHQIRARWK 89 (231)
T ss_pred HHHHHHHHHHHHHHcCCC-cccHHHHHHHHHHHHHHHhCCCHHHHHhccHHH-HhhhhHHHHHHHHHHHHhHHHHHHHHH
Confidence 556667777777655322 2234444333333322 222333333332322 22222222233332 34444333356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHH------------HHHhhccCCCcchHHHHhhccCCCCchHHHHHHHHHH
Q 048244 327 SIFLFALVQVTVHLAIILGLGKLFHFDLKLL------------LIASNANVGGPTTACGMATTKGWGSLVVPGILAGIFG 394 (413)
Q Consensus 327 ~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~------------~iAS~AnIGGpaTA~a~Aaa~~w~~Lv~pgvL~GvlG 394 (413)
.++.-+.+-..+.+.....++|+|++|.+.. ++.-.-++||.++-.+++ -++.|++|
T Consensus 90 ~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl~pkSVTtPIAm~is~~iGG~~sLta~~-----------ViitGi~G 158 (231)
T PRK10711 90 SIISICFIGSVVAMVTGTAVALWMGATPEIAASILPKSVTTPIAMAVGGSIGGIPAISAVC-----------VIFVGILG 158 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhhhhhHHHHHHHHHHhCCcHHHHHHH-----------HHHHHHHH
Confidence 6666666777788888899999999986522 122334567765544332 34556666
Q ss_pred HHHHHH
Q 048244 395 ISMATF 400 (413)
Q Consensus 395 yaiGty 400 (413)
..+|..
T Consensus 159 a~~g~~ 164 (231)
T PRK10711 159 AVFGHT 164 (231)
T ss_pred HHHHHH
Confidence 655543
No 68
>COG2431 Predicted membrane protein [Function unknown]
Probab=46.86 E-value=2.5e+02 Score=28.29 Aligned_cols=71 Identities=24% Similarity=0.277 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhHH------HHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 048244 74 AALVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLR------RIVQSTGILLLAFLLGSVATTVGTLVA 147 (413)
Q Consensus 74 ~~vl~~l~~~~lsn~glip~~s~~y~~v~~~llPlaI~LlLl~~Dlr------~i~k~~~~~L~~F~~gsvgtviG~~va 147 (413)
.++..+..|.+.....-. ++...+|.+.+.+ ++...|+| |-.+..+|.+..=++..++..+|++++
T Consensus 112 ~vl~g~~~G~l~~~~~~~------~~~a~~~~L~~Ll--F~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~ilssliGG~ia 183 (297)
T COG2431 112 VVLLGLALGLLTGSFLNF------PENASEYLLYLLL--FLIGIQLGNSGISLRQVLLNKRGLILAFITLLSSLIGGLIA 183 (297)
T ss_pred HHHHHHHHHHHhcccccC------chhHHHHHHHHHH--HHHHHHhccccchhhhHHhccchHHHHHHHHHHHHHHHHHH
Confidence 344444445444443333 3345555555443 44566776 122355888888888899999999999
Q ss_pred HHHhc
Q 048244 148 FLLVP 152 (413)
Q Consensus 148 ~~l~~ 152 (413)
.++++
T Consensus 184 a~~l~ 188 (297)
T COG2431 184 AFLLD 188 (297)
T ss_pred HHHHh
Confidence 99985
No 69
>COG2985 Predicted permease [General function prediction only]
Probab=45.34 E-value=2.4e+02 Score=30.75 Aligned_cols=113 Identities=21% Similarity=0.260 Sum_probs=64.4
Q ss_pred Hhhcc-cccchh-HHHHHHHHHHHHhhCCC-CCCCChHHHHHHHHHHHHHHHHHHHH----hhHHHHHHhhhHHHHHHHH
Q 048244 63 SEKTK-LGSMVS-AALVSTLLGLAASNLGI-IPYEAKAYAVFLEFLLPLSIPLLLFR----ADLRRIVQSTGILLLAFLL 135 (413)
Q Consensus 63 ~~k~~-~~~~l~-~~vl~~l~~~~lsn~gl-ip~~s~~y~~v~~~llPlaI~LlLl~----~Dlr~i~k~~~~~L~~F~~ 135 (413)
--|.| .+..++ ...-.++.+.++++.|. ++.++-.|+ +-++++..... =|+...+|..++=+.+|.+
T Consensus 23 ~gkIr~fG~gigg~l~g~L~Vgl~l~~~~~~i~~~~l~f~------lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~al 96 (544)
T COG2985 23 FGKIRGFGLGIGGVLFGVLFVGLFLGQYGFTINTDMLHFE------LGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFAL 96 (544)
T ss_pred hceeEEeccccccchhhHhHHHHHhcccccccccchhhhh------hhhhHhhhhhhheecccHhHHHHHhhhHHHHHHH
Confidence 44556 565555 44556788888999888 565655552 22222222222 2444555444444555555
Q ss_pred HHHHHHHHHHHHHHHhcccccCcchHHHHHHhhhccccccccHHHHHHHhC
Q 048244 136 GSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALG 186 (413)
Q Consensus 136 gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~ 186 (413)
-. .+.+..+++.+- +.++-|...++||++|.-+ -+.-+.|.+|++.
T Consensus 97 li--vi~~~~~a~~l~--k~~~~~~~~~~Gm~sGAlT-sTP~L~aa~~~L~ 142 (544)
T COG2985 97 LI--VIAALLLAWVLH--KLFGIDLGLIAGMFSGALT-STPGLGAAQDILR 142 (544)
T ss_pred HH--HHHHHHHHHHHH--hhcCCCHHHhhhhhccccc-CCchhHHHHHHHH
Confidence 44 333333444443 3355566778888888766 3677888888764
No 70
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=44.80 E-value=3.8e+02 Score=27.86 Aligned_cols=33 Identities=9% Similarity=-0.052 Sum_probs=18.0
Q ss_pred hCCChHH-HHHHHHHHHHHHHHHHHHHHHhcccC
Q 048244 185 LGVSPSV-LAAGVAADNVITAIYFMILFTLASKI 217 (413)
Q Consensus 185 l~~~~~~-~aa~~aaDnv~~~~~~~~L~~l~~~~ 217 (413)
+|+|... +-....-=.+...++..+..++.+|.
T Consensus 131 ~~~~~~~~~~~~~ip~~i~~i~~~~~~~~~~~k~ 164 (388)
T TIGR00771 131 VNMSHAPYNFHYMLPGAIGAIILTAIAHFFKQRG 164 (388)
T ss_pred hCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Confidence 5777633 43333333566666666666665553
No 71
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=42.43 E-value=3.2e+02 Score=26.29 Aligned_cols=100 Identities=18% Similarity=0.112 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhcccCCchhHHHHHHHHH--HHhhhhhhhccccchhHHHHHHHHHHHHHHhcc--cchHHHHhhhhHHH
Q 048244 254 ICKTATYLSNLFGIQGGSLPGVTAIVVIL--ATLLPKQFSYLAPAGDTLALVLMQVFFSVVGAS--GSIWNVINTAPSIF 329 (413)
Q Consensus 254 i~~~~~~la~~l~~~~~~l~~itt~~vil--at~~p~~~~~l~~~~~~lg~~ll~iffavIGa~--~~l~~~i~~ap~l~ 329 (413)
....++++.+.++.+- --|.+++..+++ ....+.+.++..++++. =++++----+..+.+ .+.+.+-+....++
T Consensus 4 ~y~~~~~l~~r~~~~~-l~P~l~a~~~ii~~L~~~~i~y~~Y~~gg~~-l~~lLgPatVALAvPLY~~~~~l~~~~~~il 81 (215)
T PF04172_consen 4 AYLIAKWLYKRFKSPF-LNPLLIAIVLIIAFLLLTGIPYEDYMQGGDI-LSFLLGPATVALAVPLYRQRRLLKKNWIPIL 81 (215)
T ss_pred HHHHHHHHHHHcCCCc-ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666554321 233433332222 22233344444443332 233333223333333 34445444566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchh
Q 048244 330 LFALVQVTVHLAIILGLGKLFHFDLK 355 (413)
Q Consensus 330 l~~~i~l~iH~~~~l~~gkLfk~~l~ 355 (413)
.-+.+-..+++.....++|+++.|.+
T Consensus 82 ~~~~~g~~~~~~~~~~l~~~lgl~~~ 107 (215)
T PF04172_consen 82 VGVLVGSLVSIFSAVLLARLLGLSPE 107 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcCHH
Confidence 77777788888889999999999865
No 72
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=42.39 E-value=3.4e+02 Score=26.55 Aligned_cols=78 Identities=26% Similarity=0.243 Sum_probs=44.9
Q ss_pred HhhcccccchhHHHHHHHHHHHHhhCCCCCCC------ChHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHH
Q 048244 63 SEKTKLGSMVSAALVSTLLGLAASNLGIIPYE------AKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLG 136 (413)
Q Consensus 63 ~~k~~~~~~l~~~vl~~l~~~~lsn~glip~~------s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~~F~~g 136 (413)
.||+|+- ++.|.+++.++-..+=...-+|.+ +...+...--.+.+++||. =++++++|.-.+.+..-++|
T Consensus 25 ~~r~~~~-~l~PlLv~~~~li~~L~~~~i~Y~~Y~~g~~~i~~lLgPAtVAlAvPLY---kq~~~ik~~w~~I~~g~~vG 100 (230)
T COG1346 25 YKRTKSP-FLNPLLVATVLLIAFLLLFGISYEDYMKGGQWINFLLGPATVALAVPLY---KQRHLIKRHWKPILAGVLVG 100 (230)
T ss_pred HHhcCCc-ccchHHHHHHHHHHHHHHcCCCHHHHhcccHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 6666643 233666666666665555566653 2333444444555777875 35666666667777766666
Q ss_pred HHHHHHHH
Q 048244 137 SVATTVGT 144 (413)
Q Consensus 137 svgtviG~ 144 (413)
++-.++-+
T Consensus 101 s~~ai~s~ 108 (230)
T COG1346 101 SVVAIISG 108 (230)
T ss_pred HHHHHHHH
Confidence 65444333
No 73
>COG0679 Predicted permeases [General function prediction only]
Probab=42.24 E-value=3.6e+02 Score=26.88 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=68.0
Q ss_pred HHHHHHHHHH-----HHHHhcccchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccchhH----HHHHhhccCCCcc
Q 048244 299 TLALVLMQVF-----FSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKL----LLIASNANVGGPT 369 (413)
Q Consensus 299 ~lg~~ll~if-----favIGa~~~l~~~i~~ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~----~~iAS~AnIGGpa 369 (413)
.+..+..|+. |..+ .+.+.... .+.+.+..+....+..++...+...|++|-|.++ ...+.-.|+|--.
T Consensus 35 ~ls~lv~~~~lP~LlF~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg 112 (311)
T COG0679 35 GLSRLVVYVALPALLFNSI-ATADLSGL-ADLGLIVASLVATLLAFFLLALIGRFLFKLDKRETVIFALASAFPNIGFLG 112 (311)
T ss_pred HHHHHHHHHHhHHHHHHHH-HhCCcchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhcccchhh
Confidence 5777777664 4444 34444443 4567777788888888888888999999999883 3445666665544
Q ss_pred hHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 048244 370 TACGMATTKGWGSLVVPGILAGIFGISMATFLGLGF 405 (413)
Q Consensus 370 TA~a~Aaa~~w~~Lv~pgvL~GvlGyaiGtylGi~v 405 (413)
-|.....+| ++=+...++.-.++..+-+..|...
T Consensus 113 -~pi~~~~~G-~~gl~~~~i~~~~~~~~~~~~g~~~ 146 (311)
T COG0679 113 -LPVALSLFG-EKGLAYAVIFLIIGLFLMFTLGVIL 146 (311)
T ss_pred -HHHHHHHcC-cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999 5555555555555555555555544
No 74
>PRK05326 potassium/proton antiporter; Reviewed
Probab=38.00 E-value=5.6e+02 Score=27.80 Aligned_cols=78 Identities=14% Similarity=0.046 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHHhcccchHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHhccchhHHHHHhhccCCCcchHHHHhh
Q 048244 298 DTLALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAII-LGLGKLFHFDLKLLLIASNANVGGPTTACGMAT 376 (413)
Q Consensus 298 ~~lg~~ll~iffavIGa~~~l~~~i~~ap~l~l~~~i~l~iH~~~~-l~~gkLfk~~l~~~~iAS~AnIGGpaTA~a~Aa 376 (413)
+.++.+.+-+++...|...|.+.+-+.....+..+.+-+.+...++ +....++++|+.+..+ .+.+-++|+++++.+
T Consensus 60 ~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~all--lgai~s~Td~a~v~~ 137 (562)
T PRK05326 60 YLVGNLALAVILFDGGLRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLGLDWLEGLL--LGAIVGSTDAAAVFS 137 (562)
T ss_pred HHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH--HhhhhccCchHHHHH
Confidence 4567777666777889999999976655544555555555554443 4455678888776643 245567777766654
Q ss_pred c
Q 048244 377 T 377 (413)
Q Consensus 377 a 377 (413)
-
T Consensus 138 i 138 (562)
T PRK05326 138 L 138 (562)
T ss_pred H
Confidence 3
No 75
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=36.64 E-value=3.4e+02 Score=24.96 Aligned_cols=120 Identities=20% Similarity=0.221 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhccc-cc-chhHHHHHHHHHHHHhhCC----CCCCCChHHHHHHHHHHHHHHHHHHHHh------hHHH
Q 048244 54 LVTGAFGLWSEKTKL-GS-MVSAALVSTLLGLAASNLG----IIPYEAKAYAVFLEFLLPLSIPLLLFRA------DLRR 121 (413)
Q Consensus 54 ~~~~a~~~~~~k~~~-~~-~l~~~vl~~l~~~~lsn~g----lip~~s~~y~~v~~~llPlaI~LlLl~~------Dlr~ 121 (413)
+...+++.+.-|.|. ++ .+|...=+++.+.+++.++ +. .+.+.-+.++++-+ .+++..+ ++.+
T Consensus 3 fl~i~lG~llG~i~i~~~~~LG~a~G~L~vgL~~G~~~~~~~~~-~~~~~~~~l~~~GL----~lFl~~VGl~aG~~F~~ 77 (169)
T PF06826_consen 3 FLGIALGYLLGRIKIPGGFSLGAAGGVLFVGLILGALGRTGPIF-LPISAPSFLRQLGL----ALFLAAVGLSAGPGFFS 77 (169)
T ss_pred hHHHHHHHHhcceeeccceeccccHHHHHHHHHHHHhhhccCCC-CCccHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 445566777666666 42 2444445555555555553 33 22233344555433 2333333 3333
Q ss_pred HH-HhhhH-HHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHhhhccccccccHHHHHHHhCC
Q 048244 122 IV-QSTGI-LLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGV 187 (413)
Q Consensus 122 i~-k~~~~-~L~~F~~gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~ 187 (413)
-+ |.|-+ .+.++.+..++.++...++.+++++ |.-..+|. +.|+--|-.+++.+.+.
T Consensus 78 ~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l-----~~~~~~G~----~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 78 SLKRGGLKLLLLGVIITLVPLLIALVIGRYLFKL-----NPGIAAGI----LAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHH----HHccccCcHHHHHHHHh
Confidence 33 33323 3444555555555555555555532 22334444 45555566666665555
No 76
>COG5486 Predicted metal-binding integral membrane protein [Function unknown]
Probab=36.14 E-value=80 Score=31.17 Aligned_cols=67 Identities=24% Similarity=0.275 Sum_probs=51.4
Q ss_pred HHHHHhcCCCcccchHHHHHhhhhccccCCCChHHHHHHHHHHHH-----------HHHHHhhcccccchhHHHHHHH
Q 048244 14 LLAFLIGSEGHRNRSVVMVRSQLSNPIISPNDHWGTWTALLVTGA-----------FGLWSEKTKLGSMVSAALVSTL 80 (413)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~a~l~~~~a-----------~~~~~~k~~~~~~l~~~vl~~l 80 (413)
-+.|+.+.-+.|.+..+.+|-.++|-+.--.--|.++.++++.+. +.+.||.+++|+.++.+.-+++
T Consensus 194 Pl~fl~shw~fr~~p~ga~~LGlrhGlyClGCCWALm~llfv~Gvmnl~Wma~ial~vliEK~~~~Gr~~srv~gall 271 (283)
T COG5486 194 PLSFLFSHWRFRAKPVGAFRLGLRHGLYCLGCCWALMLLLFVVGVMNLLWMALIALLVLIEKQTSPGRRLSRVAGALL 271 (283)
T ss_pred hHHHHHHhcCcccCcchhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHH
Confidence 468999999999999999999999998877777888888776443 3334777789988887444433
No 77
>PF06197 DUF998: Protein of unknown function (DUF998); InterPro: IPR009339 This is a family of proteins with no known function.
Probab=36.04 E-value=3.1e+02 Score=24.36 Aligned_cols=47 Identities=26% Similarity=0.358 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhCCCCCCCCh
Q 048244 49 TWTALLVTGAFGLWSEKTKLGSMVSAALVSTLLGLAASNLGIIPYEAK 96 (413)
Q Consensus 49 ~~a~l~~~~a~~~~~~k~~~~~~l~~~vl~~l~~~~lsn~glip~~s~ 96 (413)
+.++++...+.+.+.++.++.++.+..++. +.+..+.-.|++|.+.+
T Consensus 48 ~~g~~~~~~a~~l~~~~~~~~~~~~~~ll~-~~g~~~i~~g~fp~~~~ 94 (184)
T PF06197_consen 48 LSGVLFLAFAVGLFRARRRRLSRWGAVLLA-LAGLGLILVGLFPMDPP 94 (184)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHhhcCCCCCc
Confidence 334444455555554333333444433333 33444555779998654
No 78
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=34.89 E-value=6.3e+02 Score=27.53 Aligned_cols=63 Identities=27% Similarity=0.260 Sum_probs=39.2
Q ss_pred HHHhhHHHHHHhhhHHHHHHHHHHHHHH----------HHHHHHHHHhcccccCcchHH-HHHHhhhccccccccH
Q 048244 114 LFRADLRRIVQSTGILLLAFLLGSVATT----------VGTLVAFLLVPMRSLGTDSWK-IASAFMGSYIGGSINY 178 (413)
Q Consensus 114 Ll~~Dlr~i~k~~~~~L~~F~~gsvgtv----------iG~~va~~l~~~~~lg~~~wk-iag~l~gsyiGGs~N~ 178 (413)
++++=+||..+..+|-+..+.+..+|+. +=-+++..+|. ..|.+-+. ++++++|.--|=|+|+
T Consensus 99 ll~a~~r~~~~~~p~~~vt~~v~f~Gi~sniasDAg~Vvl~PL~a~iF~--~~GRhPlaGi~~afa~vs~GfsAnl 172 (502)
T PF03806_consen 99 LLSALMRKLVLKAPPRLVTPAVVFVGIMSNIASDAGYVVLPPLAAMIFA--AVGRHPLAGIAAAFAGVSGGFSANL 172 (502)
T ss_pred hHHHHHHHHhccCCcchhhHHHHHHHHHhcccccceeEeHHhhHHHHHH--HcCCChHHHHHHHHHHHhcccccee
Confidence 4567788988888887777776665543 22344555552 23433332 4566777777778887
No 79
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=33.10 E-value=7.1e+02 Score=27.57 Aligned_cols=59 Identities=14% Similarity=0.047 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Q 048244 299 TLALVLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLL 357 (413)
Q Consensus 299 ~lg~~ll~iffavIGa~~~l~~~i~~ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~ 357 (413)
.++.+-+-+++..+|...|...+-+.....+..+...+.+-..+....+.+++.++...
T Consensus 58 ~laelGvv~LlF~iGLEl~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~a 116 (621)
T PRK03562 58 HFAEFGVVLMLFVIGLELDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLGLRWQVA 116 (621)
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 34444444567788999999997655666777888888888888888888898876643
No 80
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=32.88 E-value=1.4e+02 Score=32.13 Aligned_cols=64 Identities=25% Similarity=0.279 Sum_probs=41.1
Q ss_pred HHHhhHHHHHHhhhHHHHHHHHHHHHHHHHH----------HHHHHHhcccccCcc-hHHHHHHhhhccccccccHH
Q 048244 114 LFRADLRRIVQSTGILLLAFLLGSVATTVGT----------LVAFLLVPMRSLGTD-SWKIASAFMGSYIGGSINYV 179 (413)
Q Consensus 114 Ll~~Dlr~i~k~~~~~L~~F~~gsvgtviG~----------~va~~l~~~~~lg~~-~wkiag~l~gsyiGGs~N~v 179 (413)
++++=+|+..+..+|-++.|.+..+|.+--. +++..+| ..+|.+ .-.++++++|.=-|=|.|+.
T Consensus 110 ll~alm~~~~~~~pk~llt~~vvfigi~s~~asDaayVVlpPlaAmiF--~a~GRHPlAGlaaafAgvsgGfsanl~ 184 (516)
T COG2978 110 LLSALMRKLLNKVPKRLLTFTVVFIGILSHIASDAAYVVLPPLAAMIF--IALGRHPLAGLAAAFAGVSGGFSANLL 184 (516)
T ss_pred cHHHHHHHHHhhcchHHHhhHHHHHHHHHHHHhhcceeEecchHHHHH--HHhCCCcHHHHHHHHhhcccccccccc
Confidence 4577789999999998888876665544221 1222233 122321 34578888888888888884
No 81
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=32.06 E-value=1.7e+02 Score=30.67 Aligned_cols=83 Identities=18% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHhcccchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhhccCCCc--chHHHHhhccCCCCch
Q 048244 307 VFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFHFDLKLLLIASNANVGGP--TTACGMATTKGWGSLV 384 (413)
Q Consensus 307 iffavIGa~~~l~~~i~~ap~l~l~~~i~l~iH~~~~l~~gkLfk~~l~~~~iAS~AnIGGp--aTA~a~Aaa~~w~~Lv 384 (413)
+.|..||+.+|+.- +-..|..++++...-=.-..+++..+..++++..|. ||.+=|||. +|+--+++-.. |+|.
T Consensus 110 LIFlGIGAMtDFgp-llanP~~~ll~gaaAQ~GiF~t~~~A~~lGF~~~eA--AsIgIIGgADGPTaIf~s~kLA-p~Ll 185 (399)
T TIGR03136 110 ILFFGIGAMSDISF-ILARPWASITVALFAEMGTFATLVIGYYCGLTPGEA--AAVGTIGGADGPMVLFASLILA-KDLF 185 (399)
T ss_pred HHHHhccHHhcchH-HHhChHHHHHHHHHHHhhHHHHHHHHHHcCCCHHHh--hHHhhcccCCccHHHHHHHhhh-hHhH
Q ss_pred HHHHHHHHHHHH
Q 048244 385 VPGILAGIFGIS 396 (413)
Q Consensus 385 ~pgvL~GvlGya 396 (413)
.| .++-.|.
T Consensus 186 g~---IaVAAYs 194 (399)
T TIGR03136 186 VP---ISIIAYL 194 (399)
T ss_pred HH---HHHHHHH
No 82
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=32.02 E-value=8.3e+02 Score=28.02 Aligned_cols=202 Identities=20% Similarity=0.089 Sum_probs=0.0
Q ss_pred hhHHHHHHhcCCCcccchHHHHHhhhhccccCCCChHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH-----
Q 048244 11 GTLLLAFLIGSEGHRNRSVVMVRSQLSNPIISPNDHWGTWTALLVTGAFGLWSEKTKLGSMVSAALVSTLLGLAA----- 85 (413)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~a~l~~~~a~~~~~~k~~~~~~l~~~vl~~l~~~~l----- 85 (413)
+.+.+++..+++.+. |....++.-+..- .|.+......-...-+..+|++-++.++-.-+++.+...+
T Consensus 201 ~ll~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~l~~~~v~~p~~~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~ 273 (769)
T KOG1650|consen 201 ILLALALAFSSELKL-SPLRSVWDLVLVI------GFVLFLFFVVRPLMKWIIKRTPEGKPVSDAYICVTLLGVLASAFL 273 (769)
T ss_pred HHHHHHHHHhccCCC-cchHHHHHHHHHH------HHHHheeeehhhhHHHHhhcCCCCCccccceehhhHHHHHHHHHH
Q ss_pred -------------hhCCC-CCCCCh--------HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 048244 86 -------------SNLGI-IPYEAK--------AYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVG 143 (413)
Q Consensus 86 -------------sn~gl-ip~~s~--------~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~~F~~gsvgtviG 143 (413)
--.|+ +|.+.| .-+.+.++++|+.+...=+++|++++.+ =...........++-.++
T Consensus 274 ~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~ 352 (769)
T KOG1650|consen 274 TDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLS 352 (769)
T ss_pred HHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhcccccCcchHHHHHHhhhccccccccHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 048244 144 TLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFMILFTLASKIPPEAS 222 (413)
Q Consensus 144 ~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~~~~~~aa~~aaDnv~~~~~~~~L~~l~~~~~~~~~ 222 (413)
+...-..+ +-.-.|.=.+...+.-.=+=.=.++..-.+.=..+++.|+.++..=.+.+.+--.++..+.+...+...
T Consensus 353 t~~~sl~~--k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~vl~alv~t~I~~~~l~~~y~p~~~~~~ 429 (769)
T KOG1650|consen 353 TLGTSLYC--KLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVMVLMALVSTFITPPLLMFLYDPTRKYHG 429 (769)
T ss_pred HHHHHHHh--cCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchHHHHHHHHHHHHhhHHHHHHHhcchhhhcCc
No 83
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=30.26 E-value=1.8e+02 Score=29.64 Aligned_cols=59 Identities=10% Similarity=0.166 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhCCCCCC-CChHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHH
Q 048244 75 ALVSTLLGLAASNLGIIPY-EAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAF 133 (413)
Q Consensus 75 ~vl~~l~~~~lsn~glip~-~s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~~F 133 (413)
++++.+.+..+.++.+.++ ++..-..-..-++.+.+.+.+.+...++..+|++|++=..
T Consensus 101 ~v~a~~~a~~~~~l~l~d~~~~tlv~lgig~i~Ali~a~~itk~~~~~~~~e~~Rll~~v 160 (308)
T PF06166_consen 101 PVVAVIGAQLFTKLPLLDPKNGTLVGLGIGAIVALIVALIITKPKPKQPLKESRRLLDQV 160 (308)
T ss_pred HHHHHHHHHHhccccccCCCcchHHHHHHHHHHHHHHHHHHhCCChhhhhHHHHHHHHHh
Confidence 4556666666777766655 4556666777788888888999999999999999976543
No 84
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=29.96 E-value=6.5e+02 Score=26.16 Aligned_cols=270 Identities=16% Similarity=0.192 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHHH-HhhcccccchhHHHHHHHHHHHHhhCCCCCCC------------ChHHH-HHHHHHHHHHHHH
Q 048244 47 WGTWTALLVTGAFGLW-SEKTKLGSMVSAALVSTLLGLAASNLGIIPYE------------AKAYA-VFLEFLLPLSIPL 112 (413)
Q Consensus 47 ~~~~a~l~~~~a~~~~-~~k~~~~~~l~~~vl~~l~~~~lsn~glip~~------------s~~y~-~v~~~llPlaI~L 112 (413)
|+.+ ++...+.+-+| .-| +++=|-.++=+-.++++.|...-... .+.|+ .+.+-+.|..|++
T Consensus 2 w~~~-vMi~vg~~liYLai~---k~~EPlLLlPigfG~il~N~P~~~~~~~~~~~~~~g~l~~~~~~gi~~~l~P~LIF~ 77 (360)
T PF03977_consen 2 WGNI-VMILVGFLLIYLAIK---KKYEPLLLLPIGFGMILVNIPLSGLMDQPVGGGEIGGLQPIYYFGISNGLFPPLIFM 77 (360)
T ss_pred HHHH-HHHHHHHHHHHHHHh---cCccHHHHHHHHHHHHHHhcCchhhcccccccCCCChHHHHHHHhhhcchhhHHHHH
Confidence 4444 45556666666 333 35567778889999999998753211 13443 4666677776665
Q ss_pred HHHH-hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHhhhccccccccHHHHHHHhCCChHH
Q 048244 113 LLFR-ADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSV 191 (413)
Q Consensus 113 lLl~-~Dlr~i~k~~~~~L~~F~~gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~~~~~ 191 (413)
=.=. .|..-++ ..||.++.=..+=+|+..-.+.+..+ +.. . +|.- +-..|||.-.=.++=-+....+++
T Consensus 78 GIGAmtDFgpll-anP~~~llGaaAQ~Gif~t~~~A~~l-Gf~-~-~eAA------sIgIIGgADGPtsIf~s~~LAp~L 147 (360)
T PF03977_consen 78 GIGAMTDFGPLL-ANPKTLLLGAAAQFGIFATFLGAILL-GFT-P-KEAA------SIGIIGGADGPTSIFVSSKLAPHL 147 (360)
T ss_pred HHhHHHhhHHHH-hCHHHHHHHHHHHHhHHHHHHHHHHh-CCC-H-HHhh------HhhhcccCCCcHHHHHHHhhhHHH
Confidence 4432 6887777 34554222222334444444444333 211 1 2211 224678876666666666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCC--CCCCC-ccccccCCCCCCChH-HHHHHHHHHHHHHHHHHHHHHhhcc
Q 048244 192 LAAGVAADNVITAIYFMILFTLASKIPPEAS--PANGT-EVDKESNSEDKTPVL-QTATALAISFVICKTATYLSNLFGI 267 (413)
Q Consensus 192 ~aa~~aaDnv~~~~~~~~L~~l~~~~~~~~~--~~~~~-~~~~~~~~~~~i~~~-~~~~~lava~~i~~~~~~la~~l~~ 267 (413)
++.-.++ ...||...-.+ +|+..| .+++| +...+ +.++++.. .+.+.+.+...++.+ +|
T Consensus 148 lgpIaVa----AYsYMaLvPii---qPpimklLttkkeR~I~M~--~~r~Vsk~ekiiFpivv~~~~~ll-------~P- 210 (360)
T PF03977_consen 148 LGPIAVA----AYSYMALVPII---QPPIMKLLTTKKERKIRMK--QLRPVSKTEKIIFPIVVTILVGLL-------LP- 210 (360)
T ss_pred HHHHHHH----HHHHHHHHhhh---hhHHHHHhcCHHHHhccCC--CCCCCChHHHHHHHHHHHHHHHHH-------cc-
Confidence 7764443 45666555433 233322 11111 11111 12234332 244444433332221 11
Q ss_pred cCCchhHHHHHHHHHHHhhhh--hhhcccc-chhHHHHHHHHHHHHHHhcccchHHHHhh-hhHHHHHHHHHHHHHHHHH
Q 048244 268 QGGSLPGVTAIVVILATLLPK--QFSYLAP-AGDTLALVLMQVFFSVVGASGSIWNVINT-APSIFLFALVQVTVHLAII 343 (413)
Q Consensus 268 ~~~~l~~itt~~vilat~~p~--~~~~l~~-~~~~lg~~ll~iffavIGa~~~l~~~i~~-ap~l~l~~~i~l~iH~~~~ 343 (413)
.+.|.+-.+ -+-+++.+ ..+|+.. .++++-+....++=.++|++++-..+++. .-.++..+.+-..+....=
T Consensus 211 --~a~pLig~L--m~Gnl~rEsgv~~rLs~taqn~l~nivTi~LGl~vGat~~a~~fL~~~tl~I~~LGl~Af~~~tagG 286 (360)
T PF03977_consen 211 --SAAPLIGML--MFGNLLRESGVVERLSKTAQNELMNIVTIFLGLTVGATMTAETFLNPQTLKILVLGLVAFAFSTAGG 286 (360)
T ss_pred --chHHHHHHH--HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhcCHHHHHHHHHHHHHHHHHHhHH
Confidence 122222222 12222221 1234422 23445555555567889999998888774 5577778888888888877
Q ss_pred HHHHHHhc
Q 048244 344 LGLGKLFH 351 (413)
Q Consensus 344 l~~gkLfk 351 (413)
.+++|+++
T Consensus 287 vl~~k~mn 294 (360)
T PF03977_consen 287 VLFAKLMN 294 (360)
T ss_pred HHHHHHHH
Confidence 88888865
No 85
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=27.94 E-value=8.4e+02 Score=26.81 Aligned_cols=105 Identities=15% Similarity=0.149 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHhcccccCcchHHHHHHhhhccccccccHH
Q 048244 101 FLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFL-LGSVATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYV 179 (413)
Q Consensus 101 v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~~F~-~gsvgtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~v 179 (413)
+.+.++|+--...=++.|++.+... +.....+. ...++=.++..+....++.+ ..+.++.... ---+|-..++
T Consensus 266 f~~lll~lFFi~vGm~id~~~l~~~-~~~il~~~~~~l~~K~~~~~~~~~~~g~~--~~~al~~g~~---L~~~Gef~~v 339 (601)
T PRK03659 266 FKGLLLGLFFISVGMALNLGVLYTH-LLWVLISVVVLVAVKGLVLYLLARLYGLR--SSERMQFAGV---LSQGGEFAFV 339 (601)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHH---HhccccHHHH
Confidence 4677888777777778999887754 33322222 22222233333333444311 1233433322 2345777776
Q ss_pred HHHHHhC---CChHHHHHHHHHHHHHHHHHHHHHHH
Q 048244 180 AISEALG---VSPSVLAAGVAADNVITAIYFMILFT 212 (413)
Q Consensus 180 Av~~al~---~~~~~~aa~~aaDnv~~~~~~~~L~~ 212 (413)
-.+.+.+ .+++.++..+++ .+++.+-..++..
T Consensus 340 l~~~a~~~g~i~~~~~~~lv~~-v~ls~~~tP~l~~ 374 (601)
T PRK03659 340 LFSAASSQRLLQGDQMALLLVV-VTLSMMTTPLLMK 374 (601)
T ss_pred HHHHHHhCCCCCHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 5554443 335566665444 4444433444433
No 86
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=27.18 E-value=3.2e+02 Score=27.88 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcccchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHhhc
Q 048244 303 VLMQVFFSVVGASGSIWNVINTAPSIFLFALVQVTVHLAIILGLGKLFH--FDLKLLLIASNA 363 (413)
Q Consensus 303 ~ll~iffavIGa~~~l~~~i~~ap~l~l~~~i~l~iH~~~~l~~gkLfk--~~l~~~~iAS~A 363 (413)
.++-+|-..+|+..|+.++++....=++.++..+.+.....+..-|+++ =...-.+++|.|
T Consensus 201 ~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~~~dr~~~g~~g~aG~A~sstA 263 (314)
T TIGR00793 201 TLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLILADKFIGGGDGTAGIAASSSA 263 (314)
T ss_pred eeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHHhcCCCCchhhHHHHHH
Confidence 4455567789999999999888666666777778888888888888873 223344444444
No 87
>PRK09903 putative transporter YfdV; Provisional
Probab=26.70 E-value=6.4e+02 Score=24.99 Aligned_cols=134 Identities=9% Similarity=0.047 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHhhCCCCCCC--ChHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 048244 73 SAALVSTLLGLAASNLGIIPYE--AKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGILLLAFLLGSVATTVGTLVAFLL 150 (413)
Q Consensus 73 ~~~vl~~l~~~~lsn~glip~~--s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~L~~F~~gsvgtviG~~va~~l 150 (413)
.|++++++.|++++-+|+-.++ .+.-+.+.+-..|+++..+=.+.+.++. |..++. ..+++.=.+..++..+.
T Consensus 173 nP~iia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~-~~~~~~----~~~~~~Kli~~P~i~~~ 247 (314)
T PRK09903 173 EPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKF-EFSAEI----AYNTFLKLILMPLALLL 247 (314)
T ss_pred chHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccHHH----HHHHHHHHHHHHHHHHH
Confidence 3899999999999988873322 3344456666666655444333322222 111221 12222222222322221
Q ss_pred h-cccccCcchHHHHHHhhhccccccccHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 048244 151 V-PMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGVSPSVLAAGVAADNVITAIYFMILFTL 213 (413)
Q Consensus 151 ~-~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~~~~~~aa~~aaDnv~~~~~~~~L~~l 213 (413)
. ..-.+ ++.++....+.+ -+=-.+|-.-+++.+|.+++.-+..++.-++.+.+.+.+..++
T Consensus 248 ~~~~~~l-~~~~~~v~vl~a-a~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l 309 (314)
T PRK09903 248 VGMACHL-NSEHLQMMVLAG-ALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYV 309 (314)
T ss_pred HHHHcCC-CcHHHHHHHHHH-cccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 00113 444554433332 2333467778999999999988888888788877766666554
No 88
>KOG3195 consensus Uncharacterized membrane protein NPD008/CGI-148 [General function prediction only]
Probab=26.10 E-value=49 Score=31.41 Aligned_cols=42 Identities=31% Similarity=0.398 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHH
Q 048244 73 SAALVSTLLGLAASNLGIIPYEAKAYAVFLEFLLPLSIPLLLFRADLRRIVQSTGIL 129 (413)
Q Consensus 73 ~~~vl~~l~~~~lsn~glip~~s~~y~~v~~~llPlaI~LlLl~~Dlr~i~k~~~~~ 129 (413)
+++++.|+++..++| ++..-.-...+|++||.=.++.-+||+
T Consensus 46 ~aAi~~Yil~~~f~n---------------SFi~~fv~ivlLLs~DFW~VKNvtGRl 87 (213)
T KOG3195|consen 46 GAAIVFYILCELFSN---------------SFITQFVVIVLLLSCDFWTVKNVTGRL 87 (213)
T ss_pred hHHHHHHHHHHHHHh---------------hhHHHHHHHHHHHhhhhheeecccccE
Confidence 678888999988887 344445567889999999888888884
No 89
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=25.17 E-value=3.5e+02 Score=28.71 Aligned_cols=137 Identities=24% Similarity=0.389 Sum_probs=76.4
Q ss_pred cchhHHHHHHHHHHHHhhCCCCCCCChHH----HHHHHHHHHHHHHHHHHH----hhHHHHHHhhhHHHHHHHHHH-HHH
Q 048244 70 SMVSAALVSTLLGLAASNLGIIPYEAKAY----AVFLEFLLPLSIPLLLFR----ADLRRIVQSTGILLLAFLLGS-VAT 140 (413)
Q Consensus 70 ~~l~~~vl~~l~~~~lsn~glip~~s~~y----~~v~~~llPlaI~LlLl~----~Dlr~i~k~~~~~L~~F~~gs-vgt 140 (413)
+.+=+.++..++|..+...+-.+.-+|.- +.++-.+.|+.++-+... -|.|+.-|.++|.+.-|.+-+ ++.
T Consensus 11 qv~iglilGi~~Gl~~~~~~~~~~l~plg~~Fi~Likmii~PlVf~tlv~gIa~~~~~k~~gr~g~ktl~yf~~tt~~A~ 90 (415)
T COG1301 11 QVLIGLILGILVGLFLPELGAAIYLKPLGDIFIKLIKMIIIPLVFFTLVLGIASLGDLKKLGRLGGKTLIYFLVTTTLAI 90 (415)
T ss_pred HHHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666666666666554211112333 355556677666665554 478999999999999998776 788
Q ss_pred HHHHHHHHHHhcccccCcchHHHHHHhhhccccccccHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHhc
Q 048244 141 TVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALGV-SPSVLAAGVAADNVITAIYFMILFTLA 214 (413)
Q Consensus 141 viG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~~-~~~~~aa~~aaDnv~~~~~~~~L~~l~ 214 (413)
++|-.++..+-|......+. ....-+..+ ...-.....++ |++.+.+. +=+|+...+.|.+++.++
T Consensus 91 ~iGl~~~~~~~Pg~g~~~~~----~~~~~~~~~---~~~~~~~l~~iiP~ni~~a~-a~g~vLqil~fail~G~a 157 (415)
T COG1301 91 AIGLVVANVLQPGAGINIDP----ATLDTGAES---EVSILDFLLDIIPTNIFGAL-AEGNVLQILFFAILFGLA 157 (415)
T ss_pred HHHHHHHHHcCCCCCCCcCc----cccCCcccc---cchHHHHHHhhcCCChHhHh-cCCChHHHHHHHHHHHHH
Confidence 88888887775421110000 000001110 11123333333 33455532 225788888888888775
No 90
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=25.05 E-value=2.8e+02 Score=28.71 Aligned_cols=73 Identities=22% Similarity=0.261 Sum_probs=50.3
Q ss_pred HHHHHhcccchHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHhccchhHHHHHhhccCCCc--chHHHHhhccCCCCch
Q 048244 308 FFSVVGASGSIWNVINTAPSIFLFALV-QVTVHLAIILGLGKLFHFDLKLLLIASNANVGGP--TTACGMATTKGWGSLV 384 (413)
Q Consensus 308 ffavIGa~~~l~~~i~~ap~l~l~~~i-~l~iH~~~~l~~gkLfk~~l~~~~iAS~AnIGGp--aTA~a~Aaa~~w~~Lv 384 (413)
.|..||+.+|+.-++ ..|..++++.. ++.+- ..+..+.+++++..|. ||.+=|||. +|+--+++-.. |+|.
T Consensus 75 IF~GIGAmtDFgpll-anP~~~llGaaAQ~Gif--~t~~~A~~lGf~~~eA--AsIgIIGgADGPtsIf~s~~LA-p~Ll 148 (360)
T PF03977_consen 75 IFMGIGAMTDFGPLL-ANPKTLLLGAAAQFGIF--ATFLGAILLGFTPKEA--ASIGIIGGADGPTSIFVSSKLA-PHLL 148 (360)
T ss_pred HHHHHhHHHhhHHHH-hCHHHHHHHHHHHHhHH--HHHHHHHHhCCCHHHh--hHhhhcccCCCcHHHHHHHhhh-HHHH
Confidence 378999999999976 46666555543 33332 4567788889999886 577777763 45555566665 7777
Q ss_pred HH
Q 048244 385 VP 386 (413)
Q Consensus 385 ~p 386 (413)
.|
T Consensus 149 gp 150 (360)
T PF03977_consen 149 GP 150 (360)
T ss_pred HH
Confidence 66
No 91
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=24.09 E-value=5.4e+02 Score=23.29 Aligned_cols=102 Identities=21% Similarity=0.213 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHHhhCCCC-C----CCChHHHHHHHHHHHHHHHHHHHHhhH------HHHHHhhh---HHHHHHHHHH
Q 048244 72 VSAALVSTLLGLAASNLGII-P----YEAKAYAVFLEFLLPLSIPLLLFRADL------RRIVQSTG---ILLLAFLLGS 137 (413)
Q Consensus 72 l~~~vl~~l~~~~lsn~gli-p----~~s~~y~~v~~~llPlaI~LlLl~~Dl------r~i~k~~~---~~L~~F~~gs 137 (413)
+|..-=+++.+.++++++-. | .+.+.-+.++++- +.+++..+-+ -+-+|+.+ +.....++..
T Consensus 21 LG~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~G----L~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~ 96 (154)
T TIGR01625 21 LGNAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFG----LMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITV 96 (154)
T ss_pred ecccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHH
Confidence 45455667788888888742 1 1223344455533 3333333322 23344433 3333333333
Q ss_pred HHHHHHHHHHHHHhcccccCcchHHHHHHhhhccccccccHHHHHHHhC
Q 048244 138 VATTVGTLVAFLLVPMRSLGTDSWKIASAFMGSYIGGSINYVAISEALG 186 (413)
Q Consensus 138 vgtviG~~va~~l~~~~~lg~~~wkiag~l~gsyiGGs~N~vAv~~al~ 186 (413)
+...+...+..+++++ +....+|++ .|.-.|-.+++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~-----~~~~~~G~~----aGa~T~tpaL~aa~~ 136 (154)
T TIGR01625 97 VPTLLVAVALIKLLRI-----NYALTAGML----AGATTNTPALDAAND 136 (154)
T ss_pred HHHHHHHHHHHHHhCC-----CHHHHHHHH----hccccChHHHHHHHH
Confidence 4444455555555542 223444554 455556555544443
No 92
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=22.67 E-value=9.6e+02 Score=28.78 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=23.7
Q ss_pred HHHHhhhhccccCCCChHHHHHHHHHHHHHHHH-Hhhcccccc
Q 048244 30 VMVRSQLSNPIISPNDHWGTWTALLVTGAFGLW-SEKTKLGSM 71 (413)
Q Consensus 30 ~~~~~~~~~~li~~~~~~~~~a~l~~~~a~~~~-~~k~~~~~~ 71 (413)
...+.-+...++...++=..+++++.+.|-+++ .+|..|.-.
T Consensus 39 ~~~~~~~~~~~~~~~~~sl~~g~~Ll~lA~gL~rr~r~Aw~~~ 81 (1094)
T PRK02983 39 RVPREFVDDYLFNFPDTSLAWAFVLALLAAALRRRKRAAWWVL 81 (1094)
T ss_pred hhHHHhcChhhhCCCchHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 334433444455444455666777777788877 555556533
No 93
>PF06699 PIG-F: GPI biosynthesis protein family Pig-F; InterPro: IPR009580 Glycosylphosphatidylinositol anchor biosynthesis protein Pig-F is involved in glycosylphosphatidylinositol (GPI) anchor biosynthesis [, , ]. ; GO: 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=20.90 E-value=3.2e+02 Score=25.76 Aligned_cols=79 Identities=20% Similarity=0.317 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCCChHHH-HHHHHHHHHHHH-------HHHHHhhHHHHHHhh---h----HHHHHHHHHHH
Q 048244 74 AALVSTLLGLAASNLGIIPYEAKAYA-VFLEFLLPLSIP-------LLLFRADLRRIVQST---G----ILLLAFLLGSV 138 (413)
Q Consensus 74 ~~vl~~l~~~~lsn~glip~~s~~y~-~v~~~llPlaI~-------LlLl~~Dlr~i~k~~---~----~~L~~F~~gsv 138 (413)
..+++.+++..+-..-++=..+|+.+ ...|++..+.+. ..++++|.+.+.|.- + ..--.+...++
T Consensus 65 ~~~l~~~l~~~~~~~~~VLfGAP~~~~~~~T~lla~~ls~lt~~P~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 144 (190)
T PF06699_consen 65 SLLLSLLLSTPVFHVILVLFGAPLLSHVEETFLLALHLSLLTVFPLAYVFGCDFQVWKRVFSLERPLDEIFENSLLYPAI 144 (190)
T ss_pred HHHHHHHHHHHHHHHHHeecChhHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCCccchHHHHHHHHHHH
Confidence 34444444444333444445566654 344444443332 235678877655432 1 23345567788
Q ss_pred HHHHHHHHHHHHhc
Q 048244 139 ATTVGTLVAFLLVP 152 (413)
Q Consensus 139 gtviG~~va~~l~~ 152 (413)
++++|+=++..-.|
T Consensus 145 g~~~GaWlGa~pIP 158 (190)
T PF06699_consen 145 GAVLGAWLGAVPIP 158 (190)
T ss_pred HHHHHHHHcceecc
Confidence 88888876666554
Done!