Query 048244
Match_columns 413
No_of_seqs 145 out of 307
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 13:16:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048244.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048244hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 95.9 1.4 4.9E-05 43.2 27.0 66 337-405 239-310 (332)
2 3zux_A Transporter, ASBTNM; tr 43.9 2.3E+02 0.0077 27.3 13.7 115 272-391 20-140 (332)
3 2l2t_A Receptor tyrosine-prote 17.6 1.8E+02 0.0061 20.1 4.2 28 385-412 9-36 (44)
4 2nwl_A GLTPH, glutamate sympor 10.4 3.3E+02 0.011 27.3 5.6 81 70-150 15-107 (422)
5 2ks1_B Epidermal growth factor 8.2 1.6E+02 0.0055 20.3 1.6 14 383-396 12-25 (44)
6 1xio_A Anabaena sensory rhodop 8.2 1.2E+03 0.04 21.5 10.4 49 86-134 56-114 (261)
7 2ls4_A High affinity copper up 10.7 84 0.0029 19.4 0.0 15 138-152 7-21 (26)
8 2lx0_A Membrane fusion protein 6.2 4.6E+02 0.016 16.3 2.8 21 46-66 5-28 (32)
9 1rpu_A 19 kDa protein; RNAI, p 4.8 1.6E+02 0.0056 25.3 0.1 21 167-188 86-106 (172)
10 1r9f_A Core protein P19; prote 4.7 1.6E+02 0.0054 24.6 -0.1 21 167-188 64-84 (136)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=95.93 E-value=1.4 Score=43.19 Aligned_cols=66 Identities=14% Similarity=0.071 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhccchhHHHHH----hhccCCCcchHHHHhhc-cC-CCCchHHHHHHHHHHHHHHHHHHHHH
Q 048244 337 TVHLAIILGLGKLFHFDLKLLLIA----SNANVGGPTTACGMATT-KG-WGSLVVPGILAGIFGISMATFLGLGF 405 (413)
Q Consensus 337 ~iH~~~~l~~gkLfk~~l~~~~iA----S~AnIGGpaTA~a~Aaa-~~-w~~Lv~pgvL~GvlGyaiGtylGi~v 405 (413)
.+...+-...+|++|+|.++.... .+=|. +.+..+|.. ++ .+....|..+..++=+.+|..+.-..
T Consensus 239 ~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs---~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~~~la~~~ 310 (332)
T 3zux_A 239 GIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNS---GLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYW 310 (332)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCH---HHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccH---HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444567889999998765543 34455 355556654 42 47778888888887777776655443
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=43.91 E-value=2.3e+02 Score=27.26 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhcccchHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 048244 272 LPGVTAIVVILATLLPKQFSYLAPAGDTLALVLMQVFFSVVGASGSIWNV---INTAPSIFLFALVQVTVHLAIILGLGK 348 (413)
Q Consensus 272 l~~itt~~vilat~~p~~~~~l~~~~~~lg~~ll~iffavIGa~~~l~~~---i~~ap~l~l~~~i~l~iH~~~~l~~gk 348 (413)
++.....+++++..+|...+.++.. -...+.+.+...|.+-+.+++ +++-.......++...+.=++.+++++
T Consensus 20 ~~l~i~~~~~lg~~~P~~~~~~~~~----i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~ 95 (332)
T 3zux_A 20 FSLWAALFAAAAFFAPDTFKWAGPY----IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSK 95 (332)
T ss_dssp HHHHHHHHHHHHHHCGGGTGGGGGG----HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcchhhhhhHHH----HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555677888888766655432 223333445666777666664 333233333344556666677888999
Q ss_pred HhccchhHHH--HHhhccCCCcchHHHHhh-ccCCCCchHHHHHHH
Q 048244 349 LFHFDLKLLL--IASNANVGGPTTACGMAT-TKGWGSLVVPGILAG 391 (413)
Q Consensus 349 Lfk~~l~~~~--iAS~AnIGGpaTA~a~Aa-a~~w~~Lv~pgvL~G 391 (413)
+|+.|.+... +-.-++=+|+++. +++. ++|..++..--+...
T Consensus 96 ~~~l~~~~~~Glil~~~~P~~~~s~-v~t~~a~Gd~~la~~~~~~s 140 (332)
T 3zux_A 96 LLNLPAEIAVGVILVGCCPGGTASN-VMTYLARGNVALSVAVTSVS 140 (332)
T ss_dssp HTTCCHHHHHHHHHHHHSCCCTHHH-HHHHHTTCCHHHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHhcCCchhHHH-HHHHHhCCCHHHHHHHHHHH
Confidence 9988865332 2234444555544 4554 455444444433333
No 3
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=17.61 E-value=1.8e+02 Score=20.11 Aligned_cols=28 Identities=18% Similarity=0.081 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 048244 385 VPGILAGIFGISMATFLGLGFGTTVLKH 412 (413)
Q Consensus 385 ~pgvL~GvlGyaiGtylGi~v~~~ll~~ 412 (413)
.+++..|+.|...+-.+-.+..++++|+
T Consensus 9 ~~aIA~gVVgGv~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 9 TPLIAAGVIGGLFILVIVGLTFAVYVRR 36 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cceEEEeehHHHHHHHHHHHHHHHHhhh
Confidence 3556677777666655555555555654
No 4
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=10.36 E-value=3.3e+02 Score=27.25 Aligned_cols=81 Identities=19% Similarity=0.382 Sum_probs=41.9
Q ss_pred cchhHHHHHHHHHHHHhhCCC-------CCCCChHHH-HHHHHHHHHHHHHHHHH-hhH--HHHHHhhhHHHHHHHHHHH
Q 048244 70 SMVSAALVSTLLGLAASNLGI-------IPYEAKAYA-VFLEFLLPLSIPLLLFR-ADL--RRIVQSTGILLLAFLLGSV 138 (413)
Q Consensus 70 ~~l~~~vl~~l~~~~lsn~gl-------ip~~s~~y~-~v~~~llPlaI~LlLl~-~Dl--r~i~k~~~~~L~~F~~gsv 138 (413)
+.+-+.++-.++|.++...+. +..-.+.|- .++-..+|+-...+..+ +++ |+.-|.++|.+.-|.+.++
T Consensus 15 ~ili~lvlGi~~G~~~~~~~~~~~~~~~~~~~G~lFi~llkmiv~PLVf~siv~gia~l~~~~~gri~~~ti~~~~~tt~ 94 (422)
T 2nwl_A 15 KILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSA 94 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHH
Confidence 445555666666665543220 000012232 23334444443333333 344 7778888898888887655
Q ss_pred -HHHHHHHHHHHH
Q 048244 139 -ATTVGTLVAFLL 150 (413)
Q Consensus 139 -gtviG~~va~~l 150 (413)
+..+|..++..+
T Consensus 95 iA~~igl~~~~~~ 107 (422)
T 2nwl_A 95 FAVTLGIIMARLF 107 (422)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh
Confidence 556665555444
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=8.24 E-value=1.6e+02 Score=20.29 Aligned_cols=14 Identities=7% Similarity=0.339 Sum_probs=6.7
Q ss_pred chHHHHHHHHHHHH
Q 048244 383 LVVPGILAGIFGIS 396 (413)
Q Consensus 383 Lv~pgvL~GvlGya 396 (413)
.+..||+-|+++-+
T Consensus 12 ~IA~gVVgGv~~~~ 25 (44)
T 2ks1_B 12 SIATGMVGALLLLL 25 (44)
T ss_dssp SSTHHHHHHHHHHH
T ss_pred eEEeehhHHHHHHH
Confidence 34445555555444
No 6
>1xio_A Anabaena sensory rhodopsin; signaling protein, photoreceptor; HET: RET PEE; 2.00A {Nostoc SP} SCOP: f.13.1.1
Probab=8.17 E-value=1.2e+03 Score=21.52 Aligned_cols=49 Identities=14% Similarity=0.082 Sum_probs=18.6
Q ss_pred hhCCCCC--CCChHH-H-HHHHHHHHHHHHHHH-H-----HhhHHHHHHhhhHHHHHHH
Q 048244 86 SNLGIIP--YEAKAY-A-VFLEFLLPLSIPLLL-F-----RADLRRIVQSTGILLLAFL 134 (413)
Q Consensus 86 sn~glip--~~s~~y-~-~v~~~llPlaI~LlL-l-----~~Dlr~i~k~~~~~L~~F~ 134 (413)
++.|..+ ...+.| . .=|-.-+|+.+.-+- + +++.+.++|.-.--+.+..
T Consensus 56 ~~~G~~~~~~r~i~~~RYiDWllTvPLllvel~Li~l~~ag~~~~~~~~li~as~vMiv 114 (261)
T 1xio_A 56 IDQGKVEAAGQIAHYARYIDWMVTTPLLLLSLSWTAMQFIKKDWTLIGFLMSTQIVVIT 114 (261)
T ss_dssp HC---------CTTHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHH
T ss_pred hCCCeeecCCCceeeeHHhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 6667655 333433 1 334445565544333 3 3555555554443333333
No 7
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=10.72 E-value=84 Score=19.38 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhc
Q 048244 138 VATTVGTLVAFLLVP 152 (413)
Q Consensus 138 vgtviG~~va~~l~~ 152 (413)
+++++|+.+++++|+
T Consensus 7 iavvlGa~~Gyf~F~ 21 (26)
T 2ls4_A 7 IAVAAGAGTGYFLFS 21 (26)
Confidence 578899999999985
No 8
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=6.17 E-value=4.6e+02 Score=16.33 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=13.2
Q ss_pred hHHHHH---HHHHHHHHHHHHhhc
Q 048244 46 HWGTWT---ALLVTGAFGLWSEKT 66 (413)
Q Consensus 46 ~~~~~a---~l~~~~a~~~~~~k~ 66 (413)
.|.+.+ .++...++++|.-|+
T Consensus 5 iweviaglvalltflafgfwlfky 28 (32)
T 2lx0_A 5 IWEVIAGLVALLTFLAFGFWLFKY 28 (32)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454444 344567889997765
No 9
>1rpu_A 19 kDa protein; RNAI, protein-RNA complex, RNA double helix, RNA length recognition, RNA binding protein/RNA complex; 2.50A {Carnation italian ringspot virus} SCOP: d.255.1.1
Probab=4.81 E-value=1.6e+02 Score=25.32 Aligned_cols=21 Identities=48% Similarity=0.844 Sum_probs=16.5
Q ss_pred hhhccccccccHHHHHHHhCCC
Q 048244 167 FMGSYIGGSINYVAISEALGVS 188 (413)
Q Consensus 167 l~gsyiGGs~N~vAv~~al~~~ 188 (413)
..|||.|-++|++| +.-||++
T Consensus 86 ~lgSW~gdsVn~aA-SRF~G~~ 106 (172)
T 1rpu_A 86 VLGSWTGDSVNYAA-SRFLGAN 106 (172)
T ss_dssp HGGGBCHHHHHHHH-HTTCCSS
T ss_pred HhccccccchHHHH-Hhhcccc
Confidence 57999999999976 5555654
No 10
>1r9f_A Core protein P19; protein-RNA complex, dimer, double helix, viral protein/RNA complex; 1.85A {Tomato bushy stunt virus} SCOP: d.255.1.1
Probab=4.68 E-value=1.6e+02 Score=24.56 Aligned_cols=21 Identities=43% Similarity=0.806 Sum_probs=15.9
Q ss_pred hhhccccccccHHHHHHHhCCC
Q 048244 167 FMGSYIGGSINYVAISEALGVS 188 (413)
Q Consensus 167 l~gsyiGGs~N~vAv~~al~~~ 188 (413)
..|||.|-++|++| +.-+|++
T Consensus 64 ~lgSW~gdsVn~aA-SRF~G~~ 84 (136)
T 1r9f_A 64 VLGSWTGDSVNYAA-SRFFGFD 84 (136)
T ss_dssp HHTTCCHHHHHHHH-HTTCCSS
T ss_pred HhccccccchHHHH-HHhcccc
Confidence 57899999999976 4555554
Done!