Query 048244
Match_columns 413
No_of_seqs 145 out of 307
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 13:16:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048244.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048244hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90l_ f.23.24.1 (L:) PetL su 45.2 11 0.00079 22.4 3.2 20 385-404 7-26 (32)
2 d1ofua2 d.79.2.1 (A:209-317) C 12.9 15 0.0011 28.2 -0.8 43 1-45 4-46 (109)
3 d1rq2a2 d.79.2.1 (A:206-312) C 10.3 17 0.0012 27.8 -1.3 40 1-42 4-43 (107)
4 d1w5fa2 d.79.2.1 (A:216-336) C 7.3 31 0.0022 26.8 -1.0 40 1-42 9-48 (121)
5 d1l6sa_ c.1.10.3 (A:) 5-aminol 7.1 67 0.0049 29.1 1.2 26 21-46 5-30 (323)
6 d2nwwa1 f.49.1.1 (A:12-416) Pr 6.6 5.8E+02 0.042 22.4 8.0 84 69-152 3-98 (405)
7 d2r6gf1 e.70.1.1 (F:13-260) Ma 6.1 3.5E+02 0.026 22.9 5.7 15 102-116 53-67 (248)
8 d2c1ha1 c.1.10.3 (A:10-328) 5- 6.0 79 0.0058 28.5 1.1 25 22-46 3-27 (319)
9 d1z67a1 a.259.1.1 (A:3-131) Hy 5.6 2.1E+02 0.015 22.1 3.4 35 163-197 41-92 (129)
10 d1q90m_ f.23.25.1 (M:) PetM su 5.4 1.6E+02 0.012 17.3 1.9 13 399-411 16-28 (34)
No 1
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=45.21 E-value=11 Score=22.38 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 048244 385 VPGILAGIFGISMATFLGLG 404 (413)
Q Consensus 385 ~pgvL~GvlGyaiGtylGi~ 404 (413)
-+|.+.|-+|.-.|-|+|+.
T Consensus 7 yvglligal~~tlgiylgll 26 (32)
T d1q90l_ 7 YVGLLIGALVFTLGIYLGLL 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999974
No 2
>d1ofua2 d.79.2.1 (A:209-317) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}
Probab=12.87 E-value=15 Score=28.16 Aligned_cols=43 Identities=21% Similarity=0.409 Sum_probs=33.1
Q ss_pred ChhhhhhhhhhhHHHHHHhcCCCcccchHHHHHhhhhccccCCCC
Q 048244 1 ADLRRVIKSTGTLLLAFLIGSEGHRNRSVVMVRSQLSNPIISPND 45 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 45 (413)
+|+|.++|..|.-++ -+|...-.||....++.-+..|++...|
T Consensus 4 aDvktvm~~~G~a~i--G~G~a~G~~r~~~A~~~Al~~pll~~~~ 46 (109)
T d1ofua2 4 ADVKTVMSEMGMAMM--GTGCASGPNRAREATEAAIRNPLLEDVN 46 (109)
T ss_dssp HHHHHHHTTCEEEEE--EEEEEESTTHHHHHHHHHHTCGGGTTCC
T ss_pred HHHHHHHHCCCcEEE--EEEEeCCCchHHHHHHHHHhCccccCCc
Confidence 589999999997643 3455556688888999999999886444
No 3
>d1rq2a2 d.79.2.1 (A:206-312) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.25 E-value=17 Score=27.82 Aligned_cols=40 Identities=28% Similarity=0.514 Sum_probs=31.9
Q ss_pred ChhhhhhhhhhhHHHHHHhcCCCcccchHHHHHhhhhccccC
Q 048244 1 ADLRRVIKSTGTLLLAFLIGSEGHRNRSVVMVRSQLSNPIIS 42 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 42 (413)
+|+|.++|..|.-++ -+|+....||....++.-+..||..
T Consensus 4 aDvktvm~~~G~A~~--g~G~a~G~~ra~~Av~~Al~sPLl~ 43 (107)
T d1rq2a2 4 ADVKGIMSGAGTALM--GIGSARGEGRSLKAAEIAINSPLLE 43 (107)
T ss_dssp HHHHHHHTTCEEEEE--EEEEEESTTHHHHHHHHHHTCGGGT
T ss_pred HHHHHHHhCCCeEEE--EEEEeCCCCcchHHHHHHHhCcccc
Confidence 589999999987654 3566666788888999999999885
No 4
>d1w5fa2 d.79.2.1 (A:216-336) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}
Probab=7.25 E-value=31 Score=26.82 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=31.4
Q ss_pred ChhhhhhhhhhhHHHHHHhcCCCcccchHHHHHhhhhccccC
Q 048244 1 ADLRRVIKSTGTLLLAFLIGSEGHRNRSVVMVRSQLSNPIIS 42 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 42 (413)
+|+|.|++..|.-++. +|...--||-...++.-+..||..
T Consensus 9 aDvktvm~~~G~A~iG--~G~a~G~~ra~~Av~~Al~sPLld 48 (121)
T d1w5fa2 9 ARIESVMKDAGAAILG--IGVGKGEHRAREAAKKAMESKLIE 48 (121)
T ss_dssp HHHHHHHTTCEEEEEE--EEEEESTTHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHhCCCeEEEE--EEEeCCCchHHHHHHHHHhCcccc
Confidence 5999999999986543 455555677788999999999875
No 5
>d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Escherichia coli [TaxId: 562]}
Probab=7.08 E-value=67 Score=29.10 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=22.4
Q ss_pred CCCcccchHHHHHhhhhccccCCCCh
Q 048244 21 SEGHRNRSVVMVRSQLSNPIISPNDH 46 (413)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~li~~~~~ 46 (413)
+.+||+|++..+|.-+..+-++++|.
T Consensus 5 ~R~RRlR~~~~iR~Lv~Et~Ls~~dL 30 (323)
T d1l6sa_ 5 QRPRRLRKSPALRAMFEETTLSLNDL 30 (323)
T ss_dssp CCGGGGGSSHHHHHHHCCCCCCGGGE
T ss_pred ccccccCCCHHHHHHHhhCCCCHHHc
Confidence 57899999999999999887777775
No 6
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=6.64 E-value=5.8e+02 Score=22.39 Aligned_cols=84 Identities=19% Similarity=0.286 Sum_probs=46.4
Q ss_pred ccchhHHHHHHHHHHHHhhCCCCCC----C---ChHHHHHHHHHHHHHHHHHHHH----hhHHHHHHhhhHHHHHHHHHH
Q 048244 69 GSMVSAALVSTLLGLAASNLGIIPY----E---AKAYAVFLEFLLPLSIPLLLFR----ADLRRIVQSTGILLLAFLLGS 137 (413)
Q Consensus 69 ~~~l~~~vl~~l~~~~lsn~glip~----~---s~~y~~v~~~llPlaI~LlLl~----~Dlr~i~k~~~~~L~~F~~gs 137 (413)
+|.+-+.++..++|.++...+.-+. - .+.|-.....+++..++..+.. .|-+|..|.++|.+.-|+.-+
T Consensus 3 ~rili~lv~Gi~~G~~~~~~~~~~~~~~~l~~~g~lFi~lL~m~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~tt 82 (405)
T d2nwwa1 3 QKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTS 82 (405)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTTHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcchHHHHHHHHHHHHH
Confidence 3556677888888888776543211 1 1333233333333333333321 222577888888888877655
Q ss_pred H-HHHHHHHHHHHHhc
Q 048244 138 V-ATTVGTLVAFLLVP 152 (413)
Q Consensus 138 v-gtviG~~va~~l~~ 152 (413)
+ +..+|..++..+.+
T Consensus 83 ~iA~~igl~~~~~~~p 98 (405)
T d2nwwa1 83 AFAVTLGIIMARLFNP 98 (405)
T ss_dssp HHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4 66666666666543
No 7
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=6.15 E-value=3.5e+02 Score=22.86 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHH
Q 048244 102 LEFLLPLSIPLLLFR 116 (413)
Q Consensus 102 ~~~llPlaI~LlLl~ 116 (413)
+.|++|-.+.|+.|.
T Consensus 53 ~kyi~PG~~~l~~Fv 67 (248)
T d2r6gf1 53 WRYVYPGMAGMGLFV 67 (248)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred eehhhhHHHHHHHHH
Confidence 789999998887765
No 8
>d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Prosthecochloris vibrioformis [TaxId: 1098]}
Probab=5.98 E-value=79 Score=28.55 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.3
Q ss_pred CCcccchHHHHHhhhhccccCCCCh
Q 048244 22 EGHRNRSVVMVRSQLSNPIISPNDH 46 (413)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~li~~~~~ 46 (413)
.+||+|++..+|..+..+-++++|.
T Consensus 3 R~RRlR~~~~iR~Lv~Et~Ls~~dL 27 (319)
T d2c1ha1 3 RPRRLRRTAALRNLVQENTLTVNDL 27 (319)
T ss_dssp CGGGGSSCHHHHHHHCCCCCCGGGE
T ss_pred CcccCCCCHHHHHHHhhCCCCHHHc
Confidence 5799999999999998887777775
No 9
>d1z67a1 a.259.1.1 (A:3-131) Hypothetical protein YidB {Shigella flexneri [TaxId: 623]}
Probab=5.64 E-value=2.1e+02 Score=22.12 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=23.6
Q ss_pred HHHHhhhcccc-ccccH----------------HHHHHHhCCChHHHHHHHH
Q 048244 163 IASAFMGSYIG-GSINY----------------VAISEALGVSPSVLAAGVA 197 (413)
Q Consensus 163 iag~l~gsyiG-Gs~N~----------------vAv~~al~~~~~~~aa~~a 197 (413)
..|-.+.||+| |..|. -.+++.+|+|++.....++
T Consensus 41 Glgd~v~SWvg~g~~N~pIs~~ql~~~lG~d~l~~lA~q~Gl~~~~~~~~LA 92 (129)
T d1z67a1 41 GLGAILSTWLSNQQRNQSVSGEQLESALGTNAVSDLGQKLGVDTSTASSLLA 92 (129)
T ss_dssp TCHHHHHHHHCSSSCCCCCCHHHHHHHHCHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred CcHHHHHHHhcCCCCCCCCCHHHHHHHhCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 35678999999 44564 4566677888776665444
No 10
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.45 E-value=1.6e+02 Score=17.25 Aligned_cols=13 Identities=38% Similarity=0.802 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhhh
Q 048244 399 TFLGLGFGTTVLK 411 (413)
Q Consensus 399 tylGi~v~~~ll~ 411 (413)
|.+|+.+|+.++|
T Consensus 16 tl~glaigfvllr 28 (34)
T d1q90m_ 16 TLVGLAIGFVLLR 28 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhee
Confidence 5677888876665
Done!