Your job contains 1 sequence.
>048245
EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL
KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI
LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA
SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVHY
IVEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVMKYG
SNKEIQKKK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 048245
(309 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2167111 - symbol:PUM12 "pumilio 12" species:37... 413 1.4e-38 1
DICTYBASE|DDB_G0289987 - symbol:DDB_G0289987 "Pumilio hom... 369 9.4e-33 1
TAIR|locus:2015036 - symbol:PUM8 "pumilio 8" species:3702... 347 1.7e-31 1
TAIR|locus:2164165 - symbol:PUM18 "pumilio 18" species:37... 328 1.3e-29 1
TAIR|locus:2138258 - symbol:PUM11 "pumilio 11" species:37... 326 7.2e-29 1
TAIR|locus:2144010 - symbol:PUM19 "pumilio 19" species:37... 319 1.2e-28 1
ASPGD|ASPL0000057098 - symbol:AN10071 species:162425 "Eme... 326 1.3e-28 1
TAIR|locus:2194699 - symbol:PUM7 "pumilio 7" species:3702... 325 1.7e-28 1
TAIR|locus:2011349 - symbol:PUM9 "pumilio 9" species:3702... 305 1.6e-26 1
TAIR|locus:2144711 - symbol:PUM21 "pumilio 21" species:37... 300 3.9e-26 1
TAIR|locus:2011360 - symbol:PUM10 "pumilio 10" species:37... 291 4.3e-25 1
SGD|S000002982 - symbol:PUF4 "Member of the PUF protein f... 265 9.7e-22 1
DICTYBASE|DDB_G0279557 - symbol:DDB_G0279557 "pumilio RNA... 261 2.1e-21 1
TAIR|locus:2168529 - symbol:PUM16 "pumilio 16" species:37... 247 4.9e-21 1
POMBASE|SPAC6G9.14 - symbol:SPAC6G9.14 "RNA-binding prote... 256 5.5e-21 1
TAIR|locus:2167786 - symbol:PUM14 "pumilio 14" species:37... 252 7.7e-21 1
TAIR|locus:2133534 - symbol:PUM15 "pumilio 15" species:37... 250 9.8e-21 1
TAIR|locus:2167771 - symbol:PUM13 "pumilio 13" species:37... 247 2.8e-20 1
TAIR|locus:2117552 - symbol:PUM6 "pumilio 6" species:3702... 248 6.1e-20 1
TAIR|locus:2087560 - symbol:PUM5 "pumilio 5" species:3702... 239 6.6e-19 1
POMBASE|SPAC1687.22c - symbol:puf3 "RNA-binding protein P... 236 8.9e-19 1
FB|FBgn0003165 - symbol:pum "pumilio" species:7227 "Droso... 233 5.5e-18 1
TAIR|locus:2043182 - symbol:PUM1 "pumilio 1" species:3702... 228 1.0e-17 1
TAIR|locus:2043047 - symbol:PUM3 "pumilio 3" species:3702... 226 3.3e-17 1
TAIR|locus:2076324 - symbol:PUM4 "pumilio 4" species:3702... 226 3.5e-17 1
DICTYBASE|DDB_G0279735 - symbol:pufA "RNA binding protein... 224 9.8e-17 1
TAIR|locus:2043187 - symbol:PUM2 "pumilio 2" species:3702... 221 5.1e-16 1
UNIPROTKB|Q8TB72 - symbol:PUM2 "Pumilio homolog 2" specie... 218 1.8e-15 1
RGD|1311024 - symbol:Pum2 "pumilio homolog 2 (Drosophila)... 216 2.8e-15 1
MGI|MGI:1931749 - symbol:Pum1 "pumilio 1 (Drosophila)" sp... 217 2.8e-15 1
MGI|MGI:1931751 - symbol:Pum2 "pumilio 2 (Drosophila)" sp... 216 3.5e-15 1
UNIPROTKB|H0YDK8 - symbol:PUM1 "Pumilio homolog 1" specie... 211 1.3e-14 1
UNIPROTKB|F6XHY4 - symbol:PUM1 "Uncharacterized protein" ... 212 1.4e-14 1
UNIPROTKB|E2QVA9 - symbol:PUM1 "Uncharacterized protein" ... 212 1.5e-14 1
UNIPROTKB|E7EWT3 - symbol:PUM1 "Pumilio homolog 1" specie... 211 1.6e-14 1
UNIPROTKB|F1NV23 - symbol:PUM2 "Uncharacterized protein" ... 211 1.6e-14 1
UNIPROTKB|E1BWC0 - symbol:PUM2 "Uncharacterized protein" ... 211 1.6e-14 1
UNIPROTKB|E9PCJ0 - symbol:PUM1 "Pumilio homolog 1" specie... 211 1.9e-14 1
UNIPROTKB|Q2VB19 - symbol:PUM1 "Pumilio homolog 1" specie... 211 1.9e-14 1
UNIPROTKB|Q5T1Z4 - symbol:PUM1 "Pumilio homolog 1" specie... 211 1.9e-14 1
UNIPROTKB|Q5T1Z8 - symbol:PUM1 "Pumilio homolog 1 (Drosop... 211 2.0e-14 1
CGD|CAL0004399 - symbol:orf19.5381 species:5476 "Candida ... 208 2.7e-14 1
ZFIN|ZDB-GENE-030131-2074 - symbol:pum1 "pumilio homolog ... 209 3.4e-14 1
UNIPROTKB|F1N2B8 - symbol:PUM2 "Uncharacterized protein" ... 206 7.5e-14 1
UNIPROTKB|B4E2B6 - symbol:PUM2 "Pumilio homolog 2" specie... 205 9.5e-14 1
UNIPROTKB|E2RT57 - symbol:PUM2 "Uncharacterized protein" ... 205 1.0e-13 1
UNIPROTKB|F1SCU6 - symbol:PUM2 "Uncharacterized protein" ... 205 1.0e-13 1
RGD|1307190 - symbol:Pum1 "pumilio homolog 1 (Drosophila)... 204 1.1e-13 1
WB|WBGene00004244 - symbol:puf-8 species:6239 "Caenorhabd... 198 2.5e-13 1
UNIPROTKB|F1STL2 - symbol:PUM1 "Uncharacterized protein" ... 199 3.3e-13 1
UNIPROTKB|E9PR38 - symbol:PUM1 "Pumilio homolog 1" specie... 198 6.2e-13 1
UNIPROTKB|E1BE82 - symbol:PUM1 "Uncharacterized protein" ... 199 6.5e-13 1
UNIPROTKB|H0YEH2 - symbol:PUM1 "Pumilio homolog 1" specie... 198 7.9e-13 1
UNIPROTKB|B4DG92 - symbol:PUM1 "cDNA FLJ56067, highly sim... 198 7.9e-13 1
UNIPROTKB|Q14671 - symbol:PUM1 "Pumilio homolog 1" specie... 198 8.5e-13 1
WB|WBGene00004245 - symbol:puf-9 species:6239 "Caenorhabd... 195 9.2e-13 1
CGD|CAL0000028 - symbol:MPT5 species:5476 "Candida albica... 194 1.9e-12 1
POMBASE|SPAC4G8.03c - symbol:SPAC4G8.03c "RNA-binding pro... 179 8.4e-11 1
POMBASE|SPCC1682.08c - symbol:SPCC1682.08c "RNA-binding p... 171 6.1e-10 1
SGD|S000003146 - symbol:MPT5 "mRNA-binding protein of the... 164 2.6e-09 2
CGD|CAL0000998 - symbol:PUF3 species:5476 "Candida albica... 158 2.7e-08 1
ASPGD|ASPL0000000865 - symbol:AN6587 species:162425 "Emer... 157 3.1e-08 1
SGD|S000003936 - symbol:PUF3 "Protein of the mitochondria... 156 4.2e-08 1
POMBASE|SPAC4G9.05 - symbol:mpf1 "meiotic PUF family prot... 153 5.1e-08 1
ZFIN|ZDB-GENE-081031-76 - symbol:pum2 "pumilio homolog 2 ... 142 2.3e-06 1
TAIR|locus:2035312 - symbol:PUM22 "pumilio 22" species:37... 134 3.2e-06 1
GENEDB_PFALCIPARUM|PFD0825c - symbol:PFD0825c "RNA-bindin... 128 2.8e-05 1
UNIPROTKB|Q8I1R7 - symbol:PFD0825c "RNA-binding protein o... 128 2.8e-05 1
WB|WBGene00022257 - symbol:puf-11 species:6239 "Caenorhab... 124 7.5e-05 1
WB|WBGene00004239 - symbol:puf-3 species:6239 "Caenorhabd... 117 0.00045 1
UNIPROTKB|Q9U2G4 - symbol:puf-3 "Protein PUF-3" species:6... 117 0.00045 1
>TAIR|locus:2167111 [details] [associations]
symbol:PUM12 "pumilio 12" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB019234 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00534318
RefSeq:NP_200462.2 UniGene:At.55587 ProteinModelPortal:Q9LVC3
SMR:Q9LVC3 STRING:Q9LVC3 EnsemblPlants:AT5G56510.1 GeneID:835752
KEGG:ath:AT5G56510 TAIR:At5g56510 HOGENOM:HOG000176955
InParanoid:Q9LVC3 OMA:NDIEMIF PhylomeDB:Q9LVC3
Genevestigator:Q9LVC3 Uniprot:Q9LVC3
Length = 596
Score = 413 (150.4 bits), Expect = 1.4e-38, P = 1.4e-38
Identities = 97/302 (32%), Positives = 164/302 (54%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ G ++LQ S D ++ +F + + ELM +G ++ K +E CNE Q I+
Sbjct: 289 QHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPFGNYLVQKLLEVCNEDQRMQIVH 348
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
IT + L + S D G+ +V+K+++ + + ++SALK L+ G+ V+
Sbjct: 349 SITRKPGLLIKISCDMHGTRAVQKIVETAKREEEISI-IISALKHGIVHLIKNVNGNHVV 407
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
+CL+ + F+++AA+ HC+ LA GC L + +G +++ ++ I+ NA
Sbjct: 408 QRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQKCLGYSEGEQKQHLVSEIASNAL 467
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVHY 240
LS+ GNYV+Q+V L+ + I L G+Y +LS+ KC S VV+K LK + H
Sbjct: 468 LLSQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHR 527
Query: 241 --IVEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVMK 298
I+ EL+N ++ QV D YGNYVIQ AL +Q + +VH LV ++ ++++LR
Sbjct: 528 ARIIRELINYGRLDQVMLDPYGNYVIQAAL----KQSKGNVHALLVDAIKLNISSLRTNP 583
Query: 299 YG 300
YG
Sbjct: 584 YG 585
>DICTYBASE|DDB_G0289987 [details] [associations]
symbol:DDB_G0289987 "Pumilio homology domain family
member 4" species:44689 "Dictyostelium discoideum" [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50103 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0289987 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0008270 GO:GO:0003723
EMBL:AAFI02000150 eggNOG:COG5099 RefSeq:XP_635942.1
ProteinModelPortal:Q54GR0 EnsemblProtists:DDB0188671 GeneID:8627424
KEGG:ddi:DDB_G0289987 InParanoid:Q54GR0 OMA:IVRISMN Uniprot:Q54GR0
Length = 1036
Score = 369 (135.0 bits), Expect = 9.4e-33, P = 9.4e-33
Identities = 98/312 (31%), Positives = 161/312 (51%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ G ++LQ+KL D ++ + +F V + ELM+ +G ++ K +E CN+ Q II
Sbjct: 723 QHGCRFLQKKLEESDLQLTEIIFKEVCDYMLELMTDPFGNYLCQKLLEHCNDRQRLTIIE 782
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
K+ + S++ G+ +V+K+I+ + +P + + +LK L+ G+ VI
Sbjct: 783 KVGTD---IVRISMNMHGTRAVQKMIEYLT-TPEQIQLIKRSLKDSVVPLIQDLNGNHVI 838
Query: 121 LKCLEPSYNHKNDFIYQAALEH--CLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVN 178
KCL N FIY A C+ +A H GC L ID+ S++ Q++ + N
Sbjct: 839 QKCLNKLSPQDNQFIYDAVSSDGSCIAVATHRHGCCVLQRCIDHASESQKLQLIQEVIAN 898
Query: 179 AASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAV 238
+ L + GNYVVQ+VL+L L + GH L+ K S VV+K L +A+
Sbjct: 899 SLVLVQDPYGNYVVQYVLDLPFQGLATEMAKRFVGHVPILATQKFSSNVVEKCLHVADAI 958
Query: 239 H--YIVEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRV 296
Y+++E+++ D +L + D Y NYVIQT+L T+ + H +LV ++ HL L+
Sbjct: 959 TRGYLIQEVIDYDNLLHLLQDPYANYVIQTSL--TISEPHQ--HTKLVEAIRPHLPLLKN 1014
Query: 297 MKYGSNKEIQKK 308
YG K IQ K
Sbjct: 1015 TPYG--KRIQNK 1024
>TAIR|locus:2015036 [details] [associations]
symbol:PUM8 "pumilio 8" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AC073942 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000176806 IPI:IPI00535613 PIR:B86355 RefSeq:NP_173643.1
UniGene:At.51720 ProteinModelPortal:Q9LM20 SMR:Q9LM20 PRIDE:Q9LM20
EnsemblPlants:AT1G22240.1 GeneID:838829 KEGG:ath:AT1G22240
TAIR:At1g22240 InParanoid:Q9LM20 OMA:FCIDIAT PhylomeDB:Q9LM20
ProtClustDB:CLSN2914398 Genevestigator:Q9LM20 Uniprot:Q9LM20
Length = 515
Score = 347 (127.2 bits), Expect = 1.7e-31, P = 1.7e-31
Identities = 97/302 (32%), Positives = 156/302 (51%)
Query: 1 EEGSQYLQEKLSSGDSRILDKL--FWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALI 58
+ G ++LQ G + LD L F V ELM +G ++ K ++ CNE Q I
Sbjct: 210 QHGCRFLQWIFEDGSA--LDALVIFSEVIPHVVELMMDPFGNYLMQKLLDVCNEEQRTQI 267
Query: 59 ILKITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSS 118
IL +T + + S++ +G+ V++L++ + + V SAL+ F L+ G+
Sbjct: 268 ILMVTSEPGQLIRISLNAYGTRVVQRLVESIKTRKQISL-VKSALRPGFLNLIRDLNGNH 326
Query: 119 VILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVN 178
VI +CL+ N+FI++ A + C+ +A H GC L I G +R++++ IS N
Sbjct: 327 VIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQKCIAYSSGLQREKLVTEISRN 386
Query: 179 AASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKY-QNA 237
+ L++ GNY VQ VL L D I A+ L+GHYV+LS+ K S +V++ L + +
Sbjct: 387 SLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYVELSMQKFSSHMVERCLTHCPES 446
Query: 238 VHYIVEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVM 297
IV EL++ + D Y N+VIQ AL T + S+H LV ++ H + LR
Sbjct: 447 RPQIVRELISVPHFDILIQDPYANFVIQAALAVT----KGSLHATLVEVIRPH-SILRNN 501
Query: 298 KY 299
Y
Sbjct: 502 PY 503
>TAIR|locus:2164165 [details] [associations]
symbol:PUM18 "pumilio 18" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0007059 "chromosome segregation"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0007131
"reciprocal meiotic recombination" evidence=RCA] [GO:0042138
"meiotic DNA double-strand break formation" evidence=RCA]
InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB019231
eggNOG:COG5099 HOGENOM:HOG000152208 EMBL:DQ056729 IPI:IPI00533181
RefSeq:NP_200819.1 UniGene:At.55636 ProteinModelPortal:Q9LVG3
SMR:Q9LVG3 EnsemblPlants:AT5G60110.1 GeneID:836133
KEGG:ath:AT5G60110 TAIR:At5g60110 InParanoid:Q9LVG3 OMA:EMISNSD
PhylomeDB:Q9LVG3 ProtClustDB:CLSN2916299 Genevestigator:Q9LVG3
Uniprot:Q9LVG3
Length = 327
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 89/275 (32%), Positives = 144/275 (52%)
Query: 31 FELMSGQYGRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVA 90
F LM+ G F + I + ++++L + +T F+ KFGS V+KL+
Sbjct: 46 FNLMTDGDGVSYFKEMISNSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLL---G 102
Query: 91 QSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHE 150
+S + +A+ R F + K S V ++ + +Y+ L H L LAC +
Sbjct: 103 KSDDVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQ 162
Query: 151 QGCINLNNFIDNMKGSR-RKQILHLISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICF 209
GCI LN+ I + R Q+L L++ NA LS SGN+VVQHVL L D I I
Sbjct: 163 HGCIALNDIITDADDPYYRDQLLELVASNALRLSNDASGNFVVQHVLTLYDSRCIHNIAV 222
Query: 210 ALRGHYVDLSLTKCGSFVVQKFLKYQNAVHYIVEELL--NSDQILQVASDKYGNYVIQTA 267
L G ++LS K GS++V+K L+ + ++ +V ELL + D+++++A +++GN+V+ A
Sbjct: 223 NLYGQCIELSFKKYGSYIVEKLLEVEESMVVVVVELLGCDGDRLMRLARNEFGNFVVVKA 282
Query: 268 LVETMRQDRLSVHQRLVTKLQQHLAALRVMKYGSN 302
L T + R+ + LV KL + LR +GSN
Sbjct: 283 LRFT-KMSRMDLFWGLVQKLMPFIRLLR-RSHGSN 315
>TAIR|locus:2138258 [details] [associations]
symbol:PUM11 "pumilio 11" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AL161513 eggNOG:COG5099 EMBL:AL161813 HOGENOM:HOG000124802
IPI:IPI00541594 PIR:A85089 RefSeq:NP_192624.2 UniGene:At.54217
ProteinModelPortal:Q9LDW3 SMR:Q9LDW3 EnsemblPlants:AT4G08840.1
GeneID:826455 KEGG:ath:AT4G08840 TAIR:At4g08840 InParanoid:Q9LDW3
OMA:MSISDER PhylomeDB:Q9LDW3 Genevestigator:Q9LDW3 Uniprot:Q9LDW3
Length = 556
Score = 326 (119.8 bits), Expect = 7.2e-29, P = 7.2e-29
Identities = 94/307 (30%), Positives = 158/307 (51%)
Query: 3 GSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKI 62
G + LQ+ + G+ + +F V EL + +G ++ K IE CNE Q I++++
Sbjct: 255 GCRLLQKFVDEGNFVDVMIIFKEVINNVIELGTDPFGNYLIQKLIEVCNEEQRTQILIRL 314
Query: 63 TFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILK 122
T + L + S++ +G+ V+KLI+ V + V SAL F L G+ VIL
Sbjct: 315 TSKPGLLVKISINNYGTRVVQKLIETVTTKEQISL-VKSALVPGFLSLFRELNGNHVILN 373
Query: 123 CLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASL 182
CL+ + N FI +AA + C+ +A GC L + G + ++++ IS N+ L
Sbjct: 374 CLKFFSPNDNKFILEAATKFCIEIATTRHGCCVLQRCVSYSVGEQHEKLVDEISRNSLLL 433
Query: 183 SRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQ-NAVHYI 241
++ GNY+VQ+++ + + + F LRG+YV L+ K GS VV+K L+Y + I
Sbjct: 434 AQDPFGNYLVQYIIEKKVGGV--NVLFELRGNYVKLATQKFGSHVVEKCLRYYPESRSQI 491
Query: 242 VEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVMKYGS 301
V EL++ + D Y NYVIQ AL +T R S+ +++ + ++L K
Sbjct: 492 VNELVSVLNFGYLLQDPYANYVIQCALSKTKGFVRASLVEKV--RRYENLKMTPYCKRIF 549
Query: 302 NKEIQKK 308
+K + KK
Sbjct: 550 SKNLWKK 556
>TAIR|locus:2144010 [details] [associations]
symbol:PUM19 "pumilio 19" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB026632
eggNOG:COG5099 HOGENOM:HOG000152208 IPI:IPI00541936
RefSeq:NP_200826.1 UniGene:At.66750 ProteinModelPortal:Q9LSS8
SMR:Q9LSS8 EnsemblPlants:AT5G60180.1 GeneID:836140
KEGG:ath:AT5G60180 TAIR:At5g60180 InParanoid:Q9LSS8 OMA:NPTETSG
PhylomeDB:Q9LSS8 Genevestigator:Q9LSS8 Uniprot:Q9LSS8
Length = 327
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 88/275 (32%), Positives = 143/275 (52%)
Query: 31 FELMSGQYGRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVA 90
F LM+ G F + I ++++L + +T F+ KFGS V+KL+
Sbjct: 46 FNLMTDGDGVSYFKEMISKSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLL---G 102
Query: 91 QSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHE 150
+S + +A+ R F + K S V ++ + +Y+ L H L LAC +
Sbjct: 103 KSDDVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQ 162
Query: 151 QGCINLNNFIDNMKGSR-RKQILHLISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICF 209
GCI LN+ I + R Q+L L+ NA LS SGN+VVQHVL L D I I
Sbjct: 163 HGCIALNDIITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYDSRCIHNIAV 222
Query: 210 ALRGHYVDLSLTKCGSFVVQKFLKYQNAVHYIVEELL--NSDQILQVASDKYGNYVIQTA 267
L G ++LS K GS++V+K L+ + ++ +V ELL + D+++++A +++GN+V+ A
Sbjct: 223 NLYGQCIELSFKKYGSYIVEKLLEVEESMVVVVVELLGCDGDRLMRLARNEFGNFVVVKA 282
Query: 268 LVETMRQDRLSVHQRLVTKLQQHLAALRVMKYGSN 302
L T ++ R+ + LV KL + LR +G+N
Sbjct: 283 LRFT-KEMRMDLFWGLVQKLMPFIHLLR-RSHGNN 315
>ASPGD|ASPL0000057098 [details] [associations]
symbol:AN10071 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BN001308 GO:GO:0003723
EnsemblFungi:CADANIAT00002391 OMA:HKFSSNV Uniprot:C8VU22
Length = 650
Score = 326 (119.8 bits), Expect = 1.3e-28, P = 1.3e-28
Identities = 87/302 (28%), Positives = 151/302 (50%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ G +YLQ KL + L +F ELM+ +G ++ K +E N+ Q +++
Sbjct: 248 QHGCRYLQRKLEERNDDQLQMIFAETHSHVIELMTDPFGNYLCQKLLEYSNDEQRTVLVN 307
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
K QL +A +++ G+ +++K+I+ ++ V+ ALK L+ G+ VI
Sbjct: 308 KAA--PQLVKIA-LNQHGTRALQKMIEFISTEEQT-QTVIDALKDHVVELVQDLNGNHVI 363
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
KCL K+ FIY A C+ + H GC L ID+ G++R +++ I+ NA
Sbjct: 364 QKCLNRLTAEKSQFIYDAVGAQCVTVGTHRHGCCVLQRCIDHASGAQRARLIEQITENAF 423
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKY--QNAV 238
+L + GNYVVQ++L+L + + +C LS K S V++K L+ +
Sbjct: 424 ALVQDPFGNYVVQYILDLAEARFTEPLCREFLSRIPKLSKHKFSSNVIEKCLRTADEEMR 483
Query: 239 HYIVEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVMK 298
++EE+L D++ ++ D Y NYV+QTA M + R+V ++ L +LR
Sbjct: 484 RQMIEEMLAGDELEKMLRDSYANYVVQTA----MDYADPATRARIVKYIEPILPSLRGTP 539
Query: 299 YG 300
+G
Sbjct: 540 HG 541
>TAIR|locus:2194699 [details] [associations]
symbol:PUM7 "pumilio 7" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC012680 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00517199 PIR:H96810
RefSeq:NP_177940.2 UniGene:At.52554 ProteinModelPortal:Q9C9R6
SMR:Q9C9R6 EnsemblPlants:AT1G78160.1 GeneID:844152
KEGG:ath:AT1G78160 TAIR:At1g78160 HOGENOM:HOG000176806
InParanoid:Q9C9R6 OMA:REYSAYS PhylomeDB:Q9C9R6
Genevestigator:Q9C9R6 Uniprot:Q9C9R6
Length = 650
Score = 325 (119.5 bits), Expect = 1.7e-28, P = 1.7e-28
Identities = 90/300 (30%), Positives = 148/300 (49%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ G ++LQ G S +F V ELM +G ++ K ++ C E Q I+L
Sbjct: 345 QHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLMQKLLDVCTEEQRTQIVL 404
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
T + + S++ +G+ V++L++ + +S + V AL+ F L+ G+ VI
Sbjct: 405 VATEEPGQLIRISLNAYGTRVVQRLVETI-RSGKQISLVKLALRPGFLDLIKDLNGNHVI 463
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
+CL+ N FI+ AA + C +A H GC L I +R++++ IS N+
Sbjct: 464 QRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQREKLIAEISRNSL 523
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKY-QNAVH 239
L++ GNY VQ V+ L P + + L+GHYV LS+ K S +V++ L + +
Sbjct: 524 LLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVERCLMHCPESRP 583
Query: 240 YIVEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVMKY 299
IV EL++ Q+ D Y N+VIQ AL T + +H LV ++ H + LR Y
Sbjct: 584 QIVRELVSVPHFDQLLQDPYANFVIQAALAAT----KGPLHASLVEVIRPH-SILRNNPY 638
>TAIR|locus:2011349 [details] [associations]
symbol:PUM9 "pumilio 9" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HOGENOM:HOG000124802 EMBL:DQ446324
IPI:IPI00533721 PIR:D86479 RefSeq:NP_174811.1 UniGene:At.51961
ProteinModelPortal:Q1PFN9 SMR:Q1PFN9 PRIDE:Q1PFN9
EnsemblPlants:AT1G35730.1 GeneID:840477 KEGG:ath:AT1G35730
TAIR:At1g35730 InParanoid:Q1PFN9 OMA:CAEIAIH PhylomeDB:Q1PFN9
ProtClustDB:CLSN2681930 Genevestigator:Q1PFN9 Uniprot:Q1PFN9
Length = 564
Score = 305 (112.4 bits), Expect = 1.6e-26, P = 1.6e-26
Identities = 86/289 (29%), Positives = 143/289 (49%)
Query: 3 GSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKI 62
G + LQ+ + G + + EL +G ++ K + +E Q LI+ +
Sbjct: 263 GCRVLQKLVEEGTFHEAKVILLAIIDHVVELSMDPFGNYIVQKLFDVSDEEQRTLIVSVL 322
Query: 63 TFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILK 122
T + + ++ +G+ V+K+I+ V + V S LK F L+ G+ VI
Sbjct: 323 TSNPRELIRICLNTYGTRVVQKMIETVKTKQQIAL-VKSGLKPGFLALVKDLNGNHVIQS 381
Query: 123 CLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASL 182
CL+ + N+F+ +AA ++C +A H GC L I N G +R++++ IS N+ L
Sbjct: 382 CLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQCCISNSVGLQRERLVAEISRNSLHL 441
Query: 183 SRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFL-KYQNAVHYI 241
S+ GNYVVQ++++ + + + F R HY +L+ K S V++K L KY + I
Sbjct: 442 SQDPFGNYVVQYLIDQQVSAVKLLVQF--RMHYAELATQKFSSHVIEKCLRKYPESRAEI 499
Query: 242 VEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQH 290
V ELL + D Y NYVIQTAL T + V +LV K+ ++
Sbjct: 500 VRELLCVPNFEYLLQDPYANYVIQTALSVT----KGPVRAKLVAKVYRY 544
>TAIR|locus:2144711 [details] [associations]
symbol:PUM21 "pumilio 21" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB020752
EMBL:AL353994 eggNOG:COG5099 IPI:IPI00537619 PIR:T49937
RefSeq:NP_196523.1 UniGene:At.54788 ProteinModelPortal:Q9LXC5
SMR:Q9LXC5 EnsemblPlants:AT5G09610.1 GeneID:830820
KEGG:ath:AT5G09610 TAIR:At5g09610 HOGENOM:HOG000153154
InParanoid:Q9LXC5 OMA:HQEPGES PhylomeDB:Q9LXC5
ProtClustDB:CLSN2916885 Genevestigator:Q9LXC5 Uniprot:Q9LXC5
Length = 517
Score = 300 (110.7 bits), Expect = 3.9e-26, P = 3.9e-26
Identities = 77/252 (30%), Positives = 137/252 (54%)
Query: 52 ESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLM 111
ES L I +T ++FL + +++GS +++ L + +SP L + + A+ F LM
Sbjct: 246 ESHLFKIGSALTTTKRIFLHLATNQYGSQALRILFR---RSPSLDHLLFCAVDTNFFLLM 302
Query: 112 MTKPGSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQI 171
K G +I+ + K + +Y+ E+ L+LA E GC+ LNN + ++G R I
Sbjct: 303 SDKYGRGLIIPAIRAVDKTKKESLYKLTYEYTLHLARLETGCLALNNVLQEIRGIYRDLI 362
Query: 172 LHLISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKF 231
++ NA LS G +VVQ++L L++P AI LRG + L++ + GS+VV+K
Sbjct: 363 FECVANNADWLSFDPYGTHVVQNILILQNPVATTAIAERLRGSFFRLAMERQGSYVVEKC 422
Query: 232 LKYQNAVHYIVEELL-NSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQH 290
LK A ++EE N+ + +++ +DK+GN+V+Q+AL ++ + + V KL+ H
Sbjct: 423 LKSDFARDQVLEEFRGNAKEWVRMTTDKFGNFVVQSALRVMKEKEMRPLLREFVEKLRPH 482
Query: 291 LAALRVMKYGSN 302
+ + + G N
Sbjct: 483 FGKMEIGR-GRN 493
>TAIR|locus:2011360 [details] [associations]
symbol:PUM10 "pumilio 10" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00544215 PIR:F86479
RefSeq:NP_174813.1 UniGene:At.51962 ProteinModelPortal:Q9LP21
SMR:Q9LP21 PRIDE:Q9LP21 EnsemblPlants:AT1G35750.1 GeneID:840480
KEGG:ath:AT1G35750 TAIR:At1g35750 HOGENOM:HOG000124802
InParanoid:Q9LP21 OMA:GFEEMMA PhylomeDB:Q9LP21
Genevestigator:Q9LP21 Uniprot:Q9LP21
Length = 528
Score = 291 (107.5 bits), Expect = 4.3e-25, P = 4.3e-25
Identities = 87/290 (30%), Positives = 146/290 (50%)
Query: 3 GSQYLQEKLSSGDSRILDK--LFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
G + LQ+ + G +LD +F + EL G ++ K + +E Q +I+
Sbjct: 227 GCRALQKLVEEGT--VLDSKVIFLEIIDHVVELSMDPLGNYIVQKLLVVSDEEQRTMIVS 284
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
+T + + + ++ G+ ++K+IK V + V SAL+ F L+ G V+
Sbjct: 285 VLTSKPRELIKICLNTNGTRVIQKMIKTVKTKQQIAL-VKSALEPGFLVLVNDSNGYHVL 343
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
CLE + N F+ +AA E+C LA H+ GC L + N G + ++++ IS ++
Sbjct: 344 QSCLEFLVPNDNKFVVEAATEYCAQLATHQYGCYVLQCSLINTVGLQHERLVAEISRDSL 403
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFL-KYQNAVH 239
LS+ GNYVVQ +++ + + + R H ++L+ K S V++K L KY +
Sbjct: 404 RLSQDPFGNYVVQCLIDQQVSSV--NLLLPFRTHCIELATQKFSSHVIEKCLRKYPESRA 461
Query: 240 YIVEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQ 289
IV ELL+ Q+ D Y NYVIQTAL T + +V RLV K+++
Sbjct: 462 EIVRELLSYPNFEQLLQDPYANYVIQTALSVT----KGAVRARLVEKVKR 507
>SGD|S000002982 [details] [associations]
symbol:PUF4 "Member of the PUF protein family" species:4932
"Saccharomyces cerevisiae" [GO:0008104 "protein localization"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003729
"mRNA binding" evidence=ISS;IDA] [GO:0001308 "negative regulation
of chromatin silencing involved in replicative cell aging"
evidence=IGI;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IGI]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000002982 GO:GO:0005737 GO:GO:0008104
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941
GO:GO:0017148 GO:GO:0003729 GO:GO:0006351 EMBL:S58126 GO:GO:0000288
eggNOG:COG5099 GeneTree:ENSGT00390000017241 GO:GO:0001308
OrthoDB:EOG42NN7Z EMBL:S57889 EMBL:Z72536 PIR:S64016
RefSeq:NP_011501.1 PDB:3BWT PDB:3BX2 PDB:3BX3 PDB:4DZS PDBsum:3BWT
PDBsum:3BX2 PDBsum:3BX3 PDBsum:4DZS ProteinModelPortal:P25339
SMR:P25339 DIP:DIP-2638N IntAct:P25339 MINT:MINT-425380
STRING:P25339 PaxDb:P25339 PeptideAtlas:P25339 EnsemblFungi:YGL014W
GeneID:852870 KEGG:sce:YGL014W CYGD:YGL014w HOGENOM:HOG000115799
OMA:FRRQTFH EvolutionaryTrace:P25339 NextBio:972496
Genevestigator:P25339 GermOnline:YGL014W Uniprot:P25339
Length = 888
Score = 265 (98.3 bits), Expect = 9.7e-22, P = 9.7e-22
Identities = 79/290 (27%), Positives = 143/290 (49%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ G ++LQ++L S+ D +F +T ELM+ +G ++ K +E Q +++
Sbjct: 575 QHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQ-RIVLT 633
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
KI+ F+ S++ G+ +++KLI+ + V+ +L+ L G+ VI
Sbjct: 634 KISSPH--FVEISLNPHGTRALQKLIECIKTDEEAQI-VVDSLRPYTVQLSKDLNGNHVI 690
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
KCL+ FI+ A + C+ +A H GC L +D+ + + +
Sbjct: 691 QKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVD 750
Query: 181 SLSRHRSGNYVVQHVLNLE-DPFLID---AICFALRGHYVDLSLTKCGSFVVQKFLKYQN 236
L+ GNYVVQ+++ E + D I L+ ++LS+ K GS V++K LK
Sbjct: 751 KLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNVIEKILKTAI 810
Query: 237 AVHYIVEELLNSDQ---ILQVASDKYGNYVIQTALVETMRQDRLSVHQRL 283
++ E+LN+ I + +D YGNYV+QTAL + +Q+ +++RL
Sbjct: 811 VSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHKQNDY-LYKRL 859
Score = 132 (51.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 47/199 (23%), Positives = 88/199 (44%)
Query: 110 LMMTKPGSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRK 169
LM G+ +I K LE + + + + H + ++ + G L I+ +K
Sbjct: 607 LMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTRALQKLIECIKTDEEA 666
Query: 170 QIL-HLISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVV 228
QI+ + LS+ +GN+V+Q L P I A+ +D++ + G V+
Sbjct: 667 QIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVL 726
Query: 229 QKFLKYQNAVHYIVEELLN-SDQILQVAS----DKYGNYVIQTALVETMRQDRLSVHQRL 283
Q+ L H E+ N D++L + D +GNYV+Q + + +++ ++
Sbjct: 727 QRCLD-----HGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKI 781
Query: 284 VTKLQQHLAALRVMKYGSN 302
V L+ L + K+GSN
Sbjct: 782 VHLLKPRAIELSIHKFGSN 800
>DICTYBASE|DDB_G0279557 [details] [associations]
symbol:DDB_G0279557 "pumilio RNA-binding
region-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0279557 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AAFI02000031 eggNOG:COG5099 RefSeq:XP_641698.1
ProteinModelPortal:Q54WL9 EnsemblProtists:DDB0305068 GeneID:8622107
KEGG:ddi:DDB_G0279557 InParanoid:Q54WL9 OMA:STHAANS Uniprot:Q54WL9
Length = 782
Score = 261 (96.9 bits), Expect = 2.1e-21, P = 2.1e-21
Identities = 75/271 (27%), Positives = 140/271 (51%)
Query: 1 EEGSQYLQEKLSSG-DSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALII 59
+ G ++LQ+KL DS + +F V ELM YG+++ + ++ C+ +Q I+
Sbjct: 482 QAGCRFLQKKLEEKPDSEHVTLIFNEVFDHLNELMIDPYGQYLIPQLMKYCDNNQRRQIV 541
Query: 60 LKITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSV 119
KI + F + +G ++KL++ + SP + +++++K L G+ +
Sbjct: 542 DKIAPSVETF---ACHVYGIHGIQKLLQYL--SPDQVESIIASIKGKVIQLSKDNKGNYL 596
Query: 120 ILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNA 179
I L+ N F+ A + + + H+ GC +N IDN + ++++ I+ ++
Sbjct: 597 IQSFLKQFSPEVNQFVCDAIMGNIEEICTHKVGCTVVNRCIDNANPEQLEKLVDKITEHS 656
Query: 180 ASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH 239
L + + GNYVVQH+L+ + I +L+ + +LS+ K S V++K L+ +
Sbjct: 657 LKLVQDQFGNYVVQHLLSKNKAYSSKLIV-SLKDNIAELSIQKFSSNVIEKCLQLADTPT 715
Query: 240 Y--IVEELLNSDQILQVASDKYGNYVIQTAL 268
Y I++ L +D IL + DKY N+VIQTAL
Sbjct: 716 YELIIKALTEAD-ILSLLQDKYANFVIQTAL 745
>TAIR|locus:2168529 [details] [associations]
symbol:PUM16 "pumilio 16" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB016890 IPI:IPI00533013 RefSeq:NP_200736.1 UniGene:At.65693
ProteinModelPortal:Q9FIE9 PRIDE:Q9FIE9 EnsemblPlants:AT5G59280.1
GeneID:836046 KEGG:ath:AT5G59280 TAIR:At5g59280
HOGENOM:HOG000152208 OMA:CTRNIAD Genevestigator:Q9FIE9
Uniprot:Q9FIE9
Length = 332
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 70/229 (30%), Positives = 119/229 (51%)
Query: 69 FLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEPSY 128
F++ + +K GS +++KL+ S + A+ RLF +M K S V ++ +
Sbjct: 87 FMVITTNKNGSKTLQKLM---GMSDDMDVFFFEAIMRLFIHVMTDKYASYVTIQGMRVFQ 143
Query: 129 NHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSR-RKQILHLISVNAASLSRHRS 187
K + +Y L + +LA + GCI LN I ++ R Q+L +++ NA LS
Sbjct: 144 QDKRELMYDQILRYACFLAGDQYGCIALNEIITDLDDPYYRDQLLDIVANNALLLSNDAY 203
Query: 188 GNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNA-VHYIVEELL 246
GN+VVQHVL L D I L G+ V+LS K GS++V++ L+ + + +V +LL
Sbjct: 204 GNFVVQHVLKLRDSRCTRNIADKLCGYCVELSFKKYGSYIVERLLEAGDVPMATVVLDLL 263
Query: 247 --NSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQ--QHL 291
++ ++++A +YGN+V+ AL T + LV +L +HL
Sbjct: 264 ACKTEMLIRLARSEYGNFVVCKALELTNEILTADLFYGLVNRLMPYRHL 312
>POMBASE|SPAC6G9.14 [details] [associations]
symbol:SPAC6G9.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC6G9.14 GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 OrthoDB:EOG42NN7Z PIR:T39076
RefSeq:NP_594123.1 ProteinModelPortal:Q92359
EnsemblFungi:SPAC6G9.14.1 GeneID:2542056 KEGG:spo:SPAC6G9.14
NextBio:20803131 Uniprot:Q92359
Length = 681
Score = 256 (95.2 bits), Expect = 5.5e-21, P = 5.5e-21
Identities = 82/299 (27%), Positives = 146/299 (48%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ G +YLQ L + +D +F + LM +G ++ K E +E+Q + I
Sbjct: 355 QHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAFGNYLCQKLFEHASEAQRSTFIQ 414
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
I +L + S + G+ +++K+I +V+ SP + +++AL+ L G+ VI
Sbjct: 415 IIA--PKLVPI-SFNMHGTRALQKIIDLVS-SPDQISCIVNALRPNVVLLTKDLNGNHVI 470
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
KCL FI+ A E L ++ H GC + D+ ++ +Q++ I +A
Sbjct: 471 QKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDHASPAQIEQLVEHIVPHAL 530
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAV-- 238
+L + GNYV+Q+VL L +P +AI LS K S V++K + + A
Sbjct: 531 TLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVMEKCIFFAPAAIK 590
Query: 239 HYIVEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQR--LVTKLQQHLAALR 295
++ EL++ + ++ D + NYVIQTAL D SV QR LV +++ + +++
Sbjct: 591 EKLISELMDEKHLPKLLRDSFANYVIQTAL------DNASVKQRAELVERIKPLIPSIK 643
>TAIR|locus:2167786 [details] [associations]
symbol:PUM14 "pumilio 14" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB008267 eggNOG:COG5099 HOGENOM:HOG000136003
ProtClustDB:CLSN2686651 EMBL:DQ056705 IPI:IPI00526385
RefSeq:NP_199125.2 UniGene:At.55331 ProteinModelPortal:Q4PSD1
SMR:Q4PSD1 PRIDE:Q4PSD1 EnsemblPlants:AT5G43110.1 GeneID:834328
KEGG:ath:AT5G43110 TAIR:At5g43110 InParanoid:Q4PSD1
PhylomeDB:Q4PSD1 Genevestigator:Q4PSD1 Uniprot:Q4PSD1
Length = 518
Score = 252 (93.8 bits), Expect = 7.7e-21, P = 7.7e-21
Identities = 84/314 (26%), Positives = 155/314 (49%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+E S+ L + G +D ++ + G ELM YG V + C+ Q+ ++
Sbjct: 212 KEMSERLGMSIFQGTKETVDAIYNGLIGDICELMVDPYGSDVVQLLMRRCSSEQIVQLVD 271
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQ-SPPLLYHVMSALKRLFKFLMMTKPGSSV 119
+T Q F+ +D G+++++ L+ + + + + ++ ++ + L + V
Sbjct: 272 IVTQQMFQFVNICIDSLGTNAIQVLLTCINERAKDQIPRIVDVVRTVALQLSKSNHAIFV 331
Query: 120 ILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLN-----NFIDNMKGSRRKQILHL 174
IL C H + + +++C +A + GC L + + N++ R++ I+
Sbjct: 332 ILACFRLFPLHCR-LLLELIVQNCHQIAIDQHGCCLLQLCFNKDRVPNLE-IRQRLIMEA 389
Query: 175 ISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKY 234
I+ NA L + GNYVVQ+++ L + +LIDA+ L G+Y L+ K GS VQK LK
Sbjct: 390 IA-NALRLCLNCYGNYVVQYIVELNNRYLIDALVRQLIGNYAHLARNKYGSHAVQKLLKL 448
Query: 235 QNA-VHYIVEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAA 293
+ IV +LL L + D +GNYVIQTA + + D V + L +++++
Sbjct: 449 RWIDSRVIVIDLLREIDTLLL--DPFGNYVIQTAWFVS-KDD---VRRMLRYHIERNIPM 502
Query: 294 LRVMKYGSNKEIQK 307
+R K+G NK ++K
Sbjct: 503 MRCNKFG-NKVLEK 515
>TAIR|locus:2133534 [details] [associations]
symbol:PUM15 "pumilio 15" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AF076275 eggNOG:COG5099 EMBL:AL161512 IPI:IPI00522940
PIR:T01828 RefSeq:NP_192596.1 UniGene:At.54205
ProteinModelPortal:O81465 SMR:O81465 PRIDE:O81465
EnsemblPlants:AT4G08560.1 GeneID:826417 KEGG:ath:AT4G08560
TAIR:At4g08560 InParanoid:O81465 OMA:ENIRREM PhylomeDB:O81465
Genevestigator:O81465 InterPro:IPR010264 Pfam:PF05938
Uniprot:O81465
Length = 477
Score = 250 (93.1 bits), Expect = 9.8e-21, P = 9.8e-21
Identities = 87/289 (30%), Positives = 140/289 (48%)
Query: 4 SQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKIT 63
S LQ ++ G +DK+F + ELM YG VF K +E C + Q+ + L I
Sbjct: 165 SHMLQYVIAKGLKETIDKIFDNLISHVCELMLDYYGHKVFRKLMEKCTDEQITRV-LDIV 223
Query: 64 FQDQL-FLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKP--GSSVI 120
++ F+ V G+ +++ L++ + S + M L + L++TK VI
Sbjct: 224 LEEPFEFVRLCVHTHGTHAIQGLMRSLC-SEEQISRFMETL--CYVSLLLTKDVIAHRVI 280
Query: 121 LKCLEP-SYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQIL-HLISVN 178
L C S +H ++ + +++C +A + GC L I R ++ +IS+
Sbjct: 281 LFCFNQFSPSHTR-YLLEVIVQNCYQVAIDQNGCCMLKKLIRQSSRELRDPLIKEIISI- 338
Query: 179 AASLSRHRSG----------NYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVV 228
A L + G NYVVQ++L L+D + A+ L G+YV LS K GS VV
Sbjct: 339 AVRLCGNCYGTLTPKSLLVRNYVVQYLLRLKDYEVTSALSKHLDGNYVQLSYDKYGSHVV 398
Query: 229 QKFLKYQN-AVHYIVEELLNSDQILQVASDKYGNYVIQTALVETMRQDR 276
QK L+ + + I+ ELL+ L V D YG+YVIQTA + + +D+
Sbjct: 399 QKCLESREFSSRRIIAELLSDIDSLLV--DPYGDYVIQTAWIVSEVRDK 445
>TAIR|locus:2167771 [details] [associations]
symbol:PUM13 "pumilio 13" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB008267 eggNOG:COG5099 IPI:IPI00522991 RefSeq:NP_199123.1
UniGene:At.55330 ProteinModelPortal:Q9FMH4 SMR:Q9FMH4 PaxDb:Q9FMH4
PRIDE:Q9FMH4 EnsemblPlants:AT5G43090.1 GeneID:834325
KEGG:ath:AT5G43090 TAIR:At5g43090 HOGENOM:HOG000136003
InParanoid:Q9FMH4 OMA:NGERNIW PhylomeDB:Q9FMH4
ProtClustDB:CLSN2686651 Genevestigator:Q9FMH4 Uniprot:Q9FMH4
Length = 527
Score = 247 (92.0 bits), Expect = 2.8e-20, P = 2.8e-20
Identities = 82/310 (26%), Positives = 147/310 (47%)
Query: 4 SQYLQEKLSSGDSRILDKLF-WVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKI 62
S+ L++ + G +D +F ++ G ELM +G V I C+ Q+ LI+ +
Sbjct: 223 SKELEKTIFVGTKETIDMIFDGLIVGIC-ELMVDPFGNDVVKLLIGKCSSEQIILIVDVV 281
Query: 63 TFQDQLFLLASVDKFGSSSVKKLIKVVAQ-SPPLLYHVMSALKRLFKFLMMTKPGSSVIL 121
T F+ + G+ +++ L+ + + + + +M A+ + L VIL
Sbjct: 282 TRHISKFVNICFNPIGTLAIQVLLTSIHERANNQIPRIMDAISSVALQLTRNTNAKYVIL 341
Query: 122 KCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSR---RKQILHLISVN 178
C + + + + +HC +A + GC L D + R++++ + +
Sbjct: 342 ACFRMFTSSQCRRLLEVVSQHCYQIAIDQNGCCLLQQCFDKERVPNHEIRQRLISEVIEH 401
Query: 179 AASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNA- 237
A L + GNYVVQ+V+ L++ D + L +Y L+ K GS VVQK LK +
Sbjct: 402 ALKLCLNCHGNYVVQYVVELDNQHETDLLVNKLLRNYAHLARNKYGSHVVQKLLKLRGID 461
Query: 238 VHYIVEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVM 297
IV +LL L + D +GNYVIQTA + ++D V Q L +++++ +R
Sbjct: 462 SKLIVVDLLRGIDTLLL--DPFGNYVIQTAWFVS-KED---VRQMLRYYIERNIRLMRCN 515
Query: 298 KYGSNKEIQK 307
K+G NK ++K
Sbjct: 516 KFG-NKILEK 524
>TAIR|locus:2117552 [details] [associations]
symbol:PUM6 "pumilio 6" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AL049480 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 EMBL:AF360298 EMBL:AY133866 EMBL:AK318840
EMBL:AK319148 IPI:IPI00518278 IPI:IPI00520481 IPI:IPI00656838
IPI:IPI00972816 PIR:T04242 RefSeq:NP_001031720.1 RefSeq:NP_567733.1
RefSeq:NP_974618.2 UniGene:At.21892 UniGene:At.28428
ProteinModelPortal:Q9C5E7 SMR:Q9C5E7 STRING:Q9C5E7 PaxDb:Q9C5E7
PRIDE:Q9C5E7 EnsemblPlants:AT4G25880.1 GeneID:828694
KEGG:ath:AT4G25880 TAIR:At4g25880 InParanoid:Q9C5E7 OMA:MEGSFLA
PhylomeDB:Q9C5E7 ProtClustDB:CLSN2689613 Genevestigator:Q9C5E7
Uniprot:Q9C5E7
Length = 861
Score = 248 (92.4 bits), Expect = 6.1e-20, P = 6.1e-20
Identities = 85/310 (27%), Positives = 144/310 (46%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q+KL + +F + +LM+ +G +V KF E N +Q +
Sbjct: 544 QHGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGNYVIQKFFEYGNSTQRKELAD 603
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
++ Q+ L S+ +G ++K + V+ P + L + + G+ VI
Sbjct: 604 QL--MGQIVPL-SLQMYGCRVIQKALDVI--EPDQRVRLARELDGQVMRCVRDQNGNHVI 658
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRR-KQILHLISVNA 179
KC+E K F+ A L+ H GC + ++ + + I I +
Sbjct: 659 QKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDHQCRFITEEILESV 718
Query: 180 ASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH 239
LS+ + GNYV QHVL + I L GH V LSL K S V++K L+Y V
Sbjct: 719 CVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLSLHKFASNVIEKCLEYGGRVE 778
Query: 240 --YIVEELLNSDQ----ILQVASDKYGNYVIQTALVETMRQD-RLSVHQRLVTKLQQHLA 292
I++E+ D+ +L + D+YGNYV+Q + ET D RL+ L ++++ H +
Sbjct: 779 RDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQK-IFETCTADQRLT----LFSRVRMHAS 833
Query: 293 ALRVMKYGSN 302
AL+ YG +
Sbjct: 834 ALKKYTYGKH 843
>TAIR|locus:2087560 [details] [associations]
symbol:PUM5 "pumilio 5" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005773 "vacuole" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005829
GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AP000383 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
EMBL:AK228410 EMBL:BX824276 IPI:IPI00527056 IPI:IPI00972845
RefSeq:NP_188660.3 UniGene:At.38266 ProteinModelPortal:Q9LJX4
SMR:Q9LJX4 STRING:Q9LJX4 PaxDb:Q9LJX4 PRIDE:Q9LJX4
EnsemblPlants:AT3G20250.1 GeneID:821569 KEGG:ath:AT3G20250
TAIR:At3g20250 InParanoid:Q9LJX4 OMA:QHKYASN PhylomeDB:Q9LJX4
Genevestigator:Q9LJX4 Uniprot:Q9LJX4
Length = 961
Score = 239 (89.2 bits), Expect = 6.6e-19, P = 6.6e-19
Identities = 79/311 (25%), Positives = 146/311 (46%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q+KL +F V +LM+ +G +V KFIE +Q ++
Sbjct: 640 QHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLMTDVFGNYVIQKFIEHGTPAQREELVK 699
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKV--VAQSPPLLYHVMSALKRLFKFLMMTKPGSS 118
++ Q + S+ +G ++K ++V V Q L+ + + + + + G+
Sbjct: 700 QLAGQ---MVSLSLQMYGCRVIQKALEVIDVDQKTELIRELDGNVLKCVR----DQNGNH 752
Query: 119 VILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQ-ILHLISV 177
VI KC+E + F+ A L+ H GC + +++ I+ I
Sbjct: 753 VIQKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDEILE 812
Query: 178 NAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNA 237
+A +L+ + GNYV QHVL P I L G+ V +S K S VV+K L++ ++
Sbjct: 813 SAFALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQMSQHKYASNVVEKCLEHADS 872
Query: 238 VH--YIVEELLNSDQ----ILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHL 291
+++EE++ + +L + D++ NYV+Q L + Q R + LV +++ HL
Sbjct: 873 TEREFLIEEIMGKSEEDNHLLAMMKDQFANYVVQKVLEISKDQQR----EILVQRMKIHL 928
Query: 292 AALRVMKYGSN 302
+LR YG +
Sbjct: 929 QSLRKYTYGKH 939
Score = 157 (60.3 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 55/233 (23%), Positives = 104/233 (44%)
Query: 73 SVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEPSYNHKN 132
SVD+ GS +++ ++ + V S + LM G+ VI K +E +
Sbjct: 637 SVDQHGSRFIQQKLEHCSDEEKA--SVFSEVLPQASKLMTDVFGNYVIQKFIEHGTPAQR 694
Query: 133 DFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASLSRHRSGNYVV 192
+ + + + L+ GC + ++ + ++ +++ + N R ++GN+V+
Sbjct: 695 EELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTELIRELDGNVLKCVRDQNGNHVI 754
Query: 193 QHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKY---QNAVHYIVEELLNSD 249
Q + I + A RG LS G V+Q+ L++ H I++E+L S
Sbjct: 755 QKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDEILES- 813
Query: 250 QILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVMKYGSN 302
+A D+YGNYV Q L E + D ++++ KL ++ + KY SN
Sbjct: 814 -AFALAHDQYGNYVTQHVL-ERGKPDE---RRQIIEKLTGNVVQMSQHKYASN 861
>POMBASE|SPAC1687.22c [details] [associations]
symbol:puf3 "RNA-binding protein Puf3 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0033554
"cellular response to stress" evidence=IEP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC1687.22c GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0005741 GO:GO:0033554 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 RefSeq:NP_593141.2 HSSP:Q14671
ProteinModelPortal:O94462 SMR:O94462 EnsemblFungi:SPAC1687.22c.1
GeneID:2542300 KEGG:spo:SPAC1687.22c OrthoDB:EOG4RR9RJ
NextBio:20803362 Uniprot:O94462
Length = 732
Score = 236 (88.1 bits), Expect = 8.9e-19, P = 8.9e-19
Identities = 81/310 (26%), Positives = 145/310 (46%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFW-VVSGFTFELMSGQYGRFVFGKFIESCNESQLALII 59
+ GS+++Q+KL++ + +F + S +LM +G +V K+ E NE Q +++
Sbjct: 408 QHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMMDIFGNYVVQKYFEFGNEKQKQILL 467
Query: 60 LKITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSV 119
+I + +F L S+ +G V+K I+ + SP ++ L + + G+ V
Sbjct: 468 SQI--KGHVFSL-SLQMYGCRVVQKAIEYI--SPEHQVQLIQELDGHVLDCVCDQNGNHV 522
Query: 120 ILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNA 179
I K +E FI +A L+ H GC + I++ S RK I+ + +
Sbjct: 523 IQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRAIEHCH-SERKLIIEELLPHI 581
Query: 180 ASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKY----- 234
L++ + GNYVVQH+L I + H + LS K S VV++ + Y
Sbjct: 582 LKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCHKFASNVVERCISYISDVD 641
Query: 235 -QNAVHYIVEELLNSDQILQVA-SDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLA 292
+ ++ I+ E + IL + DKY NYVIQ L + ++R L++ + H++
Sbjct: 642 RRRILNKIISEKAENCSILMLMMKDKYANYVIQKLLDASPEEER----DLLISYIYPHIS 697
Query: 293 ALRVMKYGSN 302
L+ YG +
Sbjct: 698 VLKKFTYGKH 707
Score = 156 (60.0 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 57/235 (24%), Positives = 103/235 (43%)
Query: 70 LLASVDKFGSSSVK-KLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEPSY 128
+L S D+ GS ++ KL + ++ +++ L LMM G+ V+ K E
Sbjct: 402 VLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQ--LMMDIFGNYVVQKYFEFGN 459
Query: 129 NHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASLSRHRSG 188
+ + H L+ GC + I+ + + Q++ + + ++G
Sbjct: 460 EKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQLIQELDGHVLDCVCDQNG 519
Query: 189 NYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH-YIVEELLN 247
N+V+Q + D + I ALR LS G V+Q+ +++ ++ I+EELL
Sbjct: 520 NHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRAIEHCHSERKLIIEELL- 578
Query: 248 SDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVMKYGSN 302
IL++ D+YGNYV+Q L D+ + ++ HL L K+ SN
Sbjct: 579 -PHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMI----DHLLFLSCHKFASN 628
>FB|FBgn0003165 [details] [associations]
symbol:pum "pumilio" species:7227 "Drosophila melanogaster"
[GO:0005737 "cytoplasm" evidence=NAS;IDA] [GO:0048477 "oogenesis"
evidence=TAS] [GO:0007280 "pole cell migration" evidence=IMP;TAS]
[GO:0042078 "germ-line stem cell division" evidence=NAS;TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0017148
"negative regulation of translation" evidence=TAS] [GO:0007281
"germ cell development" evidence=TAS] [GO:0001709 "cell fate
determination" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] [GO:0008258 "head involution"
evidence=IMP] [GO:0007268 "synaptic transmission" evidence=IMP]
[GO:0008595 "anterior/posterior axis specification, embryo"
evidence=TAS] [GO:0007067 "mitosis" evidence=TAS] [GO:0045786
"negative regulation of cell cycle" evidence=TAS] [GO:0016477 "cell
migration" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0007616 "long-term memory"
evidence=IMP;TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0050804
"regulation of synaptic transmission" evidence=IMP] [GO:0008582
"regulation of synaptic growth at neuromuscular junction"
evidence=IDA] [GO:0048149 "behavioral response to ethanol"
evidence=IMP] [GO:0042059 "negative regulation of epidermal growth
factor receptor signaling pathway" evidence=IMP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 EMBL:AE014297 GO:GO:0005737 GO:GO:0045892
GO:GO:0007280 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0007067 GO:GO:0008595 GO:GO:0007616 GO:GO:0048477
GO:GO:0048813 GO:GO:0003730 GO:GO:0045727 GO:GO:0042059
GO:GO:0001709 GO:GO:0045786 GO:GO:0008582 GO:GO:0000288
GO:GO:0000900 GO:GO:0008258 GO:GO:0042078 GO:GO:0050804
eggNOG:COG5099 GeneTree:ENSGT00390000017241 EMBL:X62589 EMBL:L07943
EMBL:BT001872 EMBL:BT009970 EMBL:BT021317 PIR:A46221
RefSeq:NP_524285.2 RefSeq:NP_731314.1 RefSeq:NP_731315.1
RefSeq:NP_731316.2 RefSeq:NP_788604.1 UniGene:Dm.1115 PDB:3H3D
PDBsum:3H3D ProteinModelPortal:P25822 SMR:P25822 MINT:MINT-822094
STRING:P25822 PaxDb:P25822 EnsemblMetazoa:FBtr0081990
EnsemblMetazoa:FBtr0081991 EnsemblMetazoa:FBtr0081992
EnsemblMetazoa:FBtr0333667 GeneID:41094 KEGG:dme:Dmel_CG9755
UCSC:CG9755-RA CTD:41094 FlyBase:FBgn0003165 InParanoid:P25822
OMA:LASPTIC OrthoDB:EOG4HMGRT PhylomeDB:P25822
EvolutionaryTrace:P25822 GenomeRNAi:41094 NextBio:822132
Bgee:P25822 GermOnline:CG9755 Uniprot:P25822
Length = 1533
Score = 233 (87.1 bits), Expect = 5.5e-18, P = 5.5e-18
Identities = 80/317 (25%), Positives = 150/317 (47%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q+KL + +F + + LM+ +G +V KF E Q + +
Sbjct: 1123 QHGSRFIQQKLERATAAEKQMVFSEILAAAYSLMTDVFGNYVIQKFFEFGTPEQKNTLGM 1182
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
++ + + LA + +G ++K ++ + SP ++ L + + G+ V+
Sbjct: 1183 QV--KGHVLQLA-LQMYGCRVIQKALESI--SPEQQQEIVHELDGHVLKCVKDQNGNHVV 1237
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 1238 QKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDELHEHTE 1297
Query: 181 SLSRHRSGNYVVQHVLN---LEDP-FLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQN 236
L + + GNYV+QHVL ED LI+++ RG + LS K S VV+K + +
Sbjct: 1298 QLIQDQYGNYVIQHVLEHGKQEDKSILINSV----RGKVLVLSQHKFASNVVEKCVTHAT 1353
Query: 237 AVHY--IVEELLN-SDQILQVA-SDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLA 292
+++E+ +D L V D+Y NYV+Q +++ +L ++L+TK++ H+A
Sbjct: 1354 RGERTGLIDEVCTFNDNALHVMMKDQYANYVVQK-MIDVSEPTQL---KKLMTKIRPHMA 1409
Query: 293 ALRVMKYGS--NKEIQK 307
ALR YG N +++K
Sbjct: 1410 ALRKYTYGKHINAKLEK 1426
Score = 182 (69.1 bits), Expect = 9.1e-11, P = 9.1e-11
Identities = 61/235 (25%), Positives = 115/235 (48%)
Query: 73 SVDKFGSSSVK-KLIKVVAQSPPLLYHVMSALKRLFKFLMMTKP-GSSVILKCLEPSYNH 130
S D+ GS ++ KL + A +++ + A + +MT G+ VI K E
Sbjct: 1120 SQDQHGSRFIQQKLERATAAEKQMVFSEILAAA----YSLMTDVFGNYVIQKFFEFGTPE 1175
Query: 131 KNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASLSRHRSGNY 190
+ + + H L LA GC + ++++ ++++I+H + + + ++GN+
Sbjct: 1176 QKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQQEIVHELDGHVLKCVKDQNGNH 1235
Query: 191 VVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVHY--IVEELL-N 247
VVQ + DP + I A +G LS G V+Q+ L++ A I++EL +
Sbjct: 1236 VVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDELHEH 1295
Query: 248 SDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVMKYGSN 302
++Q++Q D+YGNYVIQ L ++D+ S+ L+ ++ + L K+ SN
Sbjct: 1296 TEQLIQ---DQYGNYVIQHVLEHGKQEDK-SI---LINSVRGKVLVLSQHKFASN 1343
>TAIR|locus:2043182 [details] [associations]
symbol:PUM1 "pumilio 1" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
IPI:IPI00536716 PIR:F84693 RefSeq:NP_180483.1 UniGene:At.38509
ProteinModelPortal:Q9ZW07 SMR:Q9ZW07 STRING:Q9ZW07 PaxDb:Q9ZW07
PRIDE:Q9ZW07 EnsemblPlants:AT2G29200.1 GeneID:817469
KEGG:ath:AT2G29200 TAIR:At2g29200 HOGENOM:HOG000238460
InParanoid:Q9ZW07 OMA:DQAHKAT PhylomeDB:Q9ZW07
ProtClustDB:CLSN2717398 Genevestigator:Q9ZW07 InterPro:IPR012940
Pfam:PF07990 Uniprot:Q9ZW07
Length = 968
Score = 228 (85.3 bits), Expect = 1.0e-17, P = 1.0e-17
Identities = 79/307 (25%), Positives = 142/307 (46%)
Query: 3 GSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKI 62
GS+++Q+KL + + + ++ + LM+ +G +V KF E Q + K+
Sbjct: 644 GSRFIQQKLETATTDEKNMVYEEIMPQALVLMTDVFGNYVIQKFFEHGLPPQRRELAEKL 703
Query: 63 TFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILK 122
F L L S+ +G ++K I+VV + ++ L + + G+ V+ K
Sbjct: 704 -FDHVLPL--SLQMYGCRVIQKAIEVVDLDQKI--KMVKELDGHVMRCVRDQNGNHVVQK 758
Query: 123 CLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKG-SRRKQILHLISVNAAS 181
C+E +FI H + L+ H GC + +++ + +++ I +
Sbjct: 759 CIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMEEILSTVSM 818
Query: 182 LSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH-- 239
L++ + GNYVVQHVL P I L G V +S K S VV+K L +
Sbjct: 819 LAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEERE 878
Query: 240 YIVEELLNS---DQILQ-VASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALR 295
+V E+L + ++ LQ + D++ NYV+Q L Q R + ++T+++ HL AL+
Sbjct: 879 LLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQR----ELILTRIKVHLTALK 934
Query: 296 VMKYGSN 302
YG +
Sbjct: 935 KYTYGKH 941
Score = 150 (57.9 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 57/234 (24%), Positives = 105/234 (44%)
Query: 73 SVDKFGSSSVK-KLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEPSYNHK 131
S D++GS ++ KL ++Y + + LM G+ VI K E +
Sbjct: 639 SSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALV---LMTDVFGNYVIQKFFEHGLPPQ 695
Query: 132 NDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASLSRHRSGNYV 191
+ + +H L L+ GC + I+ + ++ +++ + + R ++GN+V
Sbjct: 696 RRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNHV 755
Query: 192 VQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKY---QNAVHYIVEELLNS 248
VQ + I+ I GH V LS G V+Q+ L++ + ++EE+L++
Sbjct: 756 VQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMEEILST 815
Query: 249 DQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVMKYGSN 302
+L A D+YGNYV+Q L +R + + L K+ Q + K+ SN
Sbjct: 816 VSML--AQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQ----MSQQKFASN 863
>TAIR|locus:2043047 [details] [associations]
symbol:PUM3 "pumilio 3" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005886 GO:GO:0005737
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
ProtClustDB:CLSN2717398 InterPro:IPR012940 Pfam:PF07990
IPI:IPI00542656 PIR:A84693 RefSeq:NP_180478.1 UniGene:At.46280
ProteinModelPortal:Q9ZW02 SMR:Q9ZW02 PaxDb:Q9ZW02 PRIDE:Q9ZW02
EnsemblPlants:AT2G29140.1 GeneID:817463 KEGG:ath:AT2G29140
TAIR:At2g29140 InParanoid:Q9ZW02 OMA:MYENASA PhylomeDB:Q9ZW02
Genevestigator:Q9ZW02 Uniprot:Q9ZW02
Length = 964
Score = 226 (84.6 bits), Expect = 3.3e-17, P = 3.3e-17
Identities = 78/307 (25%), Positives = 142/307 (46%)
Query: 3 GSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKI 62
GS+++Q+KL + + + ++ + LM+ +G +V KF E Q + K+
Sbjct: 640 GSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFGNYVIQKFFEHGLPPQRRELGEKL 699
Query: 63 TFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILK 122
D + L S+ +G ++K I+VV + ++ L + + G+ V+ K
Sbjct: 700 I--DNVLPL-SLQMYGCRVIQKAIEVVDLDQKI--QMVKELDGHVMRCVRDQNGNHVVQK 754
Query: 123 CLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKG-SRRKQILHLISVNAAS 181
C+E +FI H + L+ H GC + +++ + +++ I +
Sbjct: 755 CIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQSKVMEEILSTVSM 814
Query: 182 LSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH-- 239
L++ + GNYVVQHVL P I L G V +S K S VV+K L +
Sbjct: 815 LTQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEERE 874
Query: 240 YIVEELLNS---DQILQ-VASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALR 295
+V E+L + ++ LQ + D++ NYV+Q L Q R + ++T+++ HL AL+
Sbjct: 875 LLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQR----ELILTRIKVHLNALK 930
Query: 296 VMKYGSN 302
YG +
Sbjct: 931 KYTYGKH 937
Score = 147 (56.8 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 58/234 (24%), Positives = 106/234 (45%)
Query: 73 SVDKFGSSSVK-KLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEPSYNHK 131
S D++GS ++ KL ++Y + K L LM G+ VI K E +
Sbjct: 635 SSDQYGSRFIQQKLETATTDEKNMVYEEIMP-KALA--LMTDVFGNYVIQKFFEHGLPPQ 691
Query: 132 NDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASLSRHRSGNYV 191
+ + +++ L L+ GC + I+ + ++ Q++ + + R ++GN+V
Sbjct: 692 RRELGEKLIDNVLPLSLQMYGCRVIQKAIEVVDLDQKIQMVKELDGHVMRCVRDQNGNHV 751
Query: 192 VQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKY---QNAVHYIVEELLNS 248
VQ + I+ I GH V LS G V+Q+ L++ + ++EE+L++
Sbjct: 752 VQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQSKVMEEILST 811
Query: 249 DQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVMKYGSN 302
+L D+YGNYV+Q L +R + + L K+ Q + K+ SN
Sbjct: 812 VSML--TQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQ----MSQQKFASN 859
>TAIR|locus:2076324 [details] [associations]
symbol:PUM4 "pumilio 4" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729 EMBL:AC009400
eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460 InterPro:IPR012940
Pfam:PF07990 EMBL:AK117911 EMBL:BT005311 IPI:IPI00525853
RefSeq:NP_187647.2 UniGene:At.27627 UniGene:At.48643
ProteinModelPortal:Q9SS47 SMR:Q9SS47 PaxDb:Q9SS47 PRIDE:Q9SS47
EnsemblPlants:AT3G10360.1 GeneID:820198 KEGG:ath:AT3G10360
TAIR:At3g10360 InParanoid:Q9SS47 OMA:FKNNKTR PhylomeDB:Q9SS47
Genevestigator:Q9SS47 Uniprot:Q9SS47
Length = 1003
Score = 226 (84.6 bits), Expect = 3.5e-17, P = 3.5e-17
Identities = 77/307 (25%), Positives = 143/307 (46%)
Query: 3 GSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKI 62
GS+++Q+KL + + +F + + LM+ +G +V KF E Q + ++
Sbjct: 678 GSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKFFEHGTTKQRKELAEQV 737
Query: 63 TFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILK 122
T L S+ +G ++K ++VV ++ L + + G+ VI K
Sbjct: 738 TGH---VLALSLQMYGCRVIQKALEVVELEQQA--RMVKELDGSVMKCVHDQNGNHVIQK 792
Query: 123 CLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQIL-HLISVNAAS 181
C+E FI + L L+ H GC + ++++ ++I+ I + +
Sbjct: 793 CIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMDSVCT 852
Query: 182 LSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH-- 239
L++ + GNYV+QH++ P I L G V +S K S VV+K L +
Sbjct: 853 LAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASNVVEKCLTFGGPEERQ 912
Query: 240 YIVEELL---NSDQILQ-VASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALR 295
+V E+L + ++ LQ + D +GNYV+Q L ET L++ ++++++ HL AL+
Sbjct: 913 VLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVL-ETCDDQSLAL---ILSRIKVHLNALK 968
Query: 296 VMKYGSN 302
YG +
Sbjct: 969 RYTYGKH 975
>DICTYBASE|DDB_G0279735 [details] [associations]
symbol:pufA "RNA binding protein" species:44689
"Dictyostelium discoideum" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 dictyBase:DDB_G0279735
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000032
OMA:FNDSANG RefSeq:XP_641551.1 EnsemblProtists:DDB0233053
GeneID:8622225 KEGG:ddi:DDB_G0279735 InParanoid:Q54WA7
ProtClustDB:CLSZ2846814 Uniprot:Q54WA7
Length = 785
Score = 224 (83.9 bits), Expect = 9.8e-17, P = 9.8e-17
Identities = 76/286 (26%), Positives = 130/286 (45%)
Query: 3 GSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKI 62
GS+ +Q+K+ + +F V LM+ +G +V KF E Q ++ K+
Sbjct: 473 GSRIIQQKIENASLEEKQLVFDEVVVAVHSLMTDVFGNYVLQKFFEHGTTEQKRILADKL 532
Query: 63 TFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILK 122
+ L ++ +G ++K I+ + +L ++ L + + G+ VI K
Sbjct: 533 SGH---ILSLTLQMYGCRVIQKAIESIELDKQIL--LIGELNGHIVQCVTDQNGNHVIQK 587
Query: 123 CLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASL 182
C+E H FI + H LA H GC + +++ + IL + A SL
Sbjct: 588 CIEKIPTHLIQFIIDSFHGHIYQLATHPYGCRVIQRILEHCAEKQVAPILDELMRCAVSL 647
Query: 183 SRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH--Y 240
+ + GNYV+QHVL P AI L+G +LS K S V++K +++
Sbjct: 648 VQDQYGNYVIQHVLENGTPRDKSAIVCKLQGQIYNLSQHKFASNVIEKCVQHGCTAERIL 707
Query: 241 IVEELL-------NSDQILQVASDKYGNYVIQTAL--VETMRQDRL 277
I+ E+L +S+ +L++ D Y NYVIQ L VE ++D +
Sbjct: 708 IINEILGDANSPNSSNVLLKILKDPYANYVIQKILDIVEPAQRDMI 753
Score = 149 (57.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 60/234 (25%), Positives = 103/234 (44%)
Query: 73 SVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEPSYNHKN 132
S D+ GS +++ I+ + L V + LM G+ V+ K E +
Sbjct: 468 SKDQVGSRIIQQKIENASLEEKQL--VFDEVVVAVHSLMTDVFGNYVLQKFFEHGTTEQK 525
Query: 133 DFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASLS--RHRSGNY 190
+ H L L GC + I++++ KQIL + +N + ++GN+
Sbjct: 526 RILADKLSGHILSLTLQMYGCRVIQKAIESIELD--KQILLIGELNGHIVQCVTDQNGNH 583
Query: 191 VVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKY--QNAVHYIVEELLNS 248
V+Q + LI I + GH L+ G V+Q+ L++ + V I++EL+
Sbjct: 584 VIQKCIEKIPTHLIQFIIDSFHGHIYQLATHPYGCRVIQRILEHCAEKQVAPILDELMRC 643
Query: 249 DQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVMKYGSN 302
+ + D+YGNYVIQ L +D+ ++ V KLQ + L K+ SN
Sbjct: 644 --AVSLVQDQYGNYVIQHVLENGTPRDKSAI----VCKLQGQIYNLSQHKFASN 691
>TAIR|locus:2043187 [details] [associations]
symbol:PUM2 "pumilio 2" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS;IDA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005829 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003730 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 ProtClustDB:CLSN2717398 InterPro:IPR012940
Pfam:PF07990 EMBL:AY096653 EMBL:AK226635 IPI:IPI00539996 PIR:E84693
RefSeq:NP_001189630.1 RefSeq:NP_180482.1 UniGene:At.28148
UniGene:At.48528 ProteinModelPortal:Q9ZW06 SMR:Q9ZW06 STRING:Q9ZW06
PaxDb:Q9ZW06 PRIDE:Q9ZW06 ProMEX:Q9ZW06 EnsemblPlants:AT2G29190.1
EnsemblPlants:AT2G29190.2 GeneID:817468 KEGG:ath:AT2G29190
TAIR:At2g29190 InParanoid:Q9ZW06 OMA:LAANCED PhylomeDB:Q9ZW06
Genevestigator:Q9ZW06 Uniprot:Q9ZW06
Length = 972
Score = 221 (82.9 bits), Expect = 5.1e-16, P = 5.1e-16
Identities = 77/307 (25%), Positives = 143/307 (46%)
Query: 3 GSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKI 62
GS+++Q+KL + S + ++ + LM+ +G +V KF E Q + K+
Sbjct: 648 GSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFGNYVIQKFFEHGLPPQRRELADKL 707
Query: 63 TFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILK 122
F + L L S+ +G ++K I+VV + ++ L + + G+ V+ K
Sbjct: 708 -FDNVLPL--SLQMYGCRVIQKAIEVVDLDQKI--KMVKELDGHVMRCVRDQNGNHVVQK 762
Query: 123 CLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKG-SRRKQILHLISVNAAS 181
C+E +FI + + L+ H GC + +++ + +++ I +
Sbjct: 763 CIECVPEENIEFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMDEIMSTISM 822
Query: 182 LSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH-- 239
L++ + GNYV+QHVL P I L G V +S K S VV+K L +
Sbjct: 823 LAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEERE 882
Query: 240 YIVEELLNS---DQILQ-VASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALR 295
++V E+L + ++ LQ + D++ NYV+Q L Q R + ++ +++ HL AL+
Sbjct: 883 FLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQR----ELILGRIKVHLNALK 938
Query: 296 VMKYGSN 302
YG +
Sbjct: 939 KYTYGKH 945
>UNIPROTKB|Q8TB72 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 EMBL:CH471053 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 HOGENOM:HOG000238461
HOVERGEN:HBG049462 EMBL:AF315591 EMBL:D87078 EMBL:AC007041
EMBL:AK093847 EMBL:BC024218 EMBL:BC112046 EMBL:BC112048
EMBL:AF272350 IPI:IPI00022184 IPI:IPI00398749 IPI:IPI00398750
RefSeq:NP_056132.1 UniGene:Hs.467824 PDB:3Q0Q PDB:3Q0R PDB:3Q0S
PDBsum:3Q0Q PDBsum:3Q0R PDBsum:3Q0S ProteinModelPortal:Q8TB72
SMR:Q8TB72 IntAct:Q8TB72 MINT:MINT-254513 STRING:Q8TB72
PhosphoSite:Q8TB72 DMDM:41688714 PaxDb:Q8TB72 PRIDE:Q8TB72
Ensembl:ENST00000319801 Ensembl:ENST00000338086
Ensembl:ENST00000361078 Ensembl:ENST00000403432
Ensembl:ENST00000440577 GeneID:23369 KEGG:hsa:23369 UCSC:uc002rds.1
CTD:23369 GeneCards:GC02M020448 HGNC:HGNC:14958 HPA:HPA030316
MIM:607205 neXtProt:NX_Q8TB72 PharmGKB:PA34043 InParanoid:Q8TB72
OMA:HITSIPR PhylomeDB:Q8TB72 ChiTaRS:PUM2 EvolutionaryTrace:Q8TB72
GenomeRNAi:23369 NextBio:45440 ArrayExpress:Q8TB72 Bgee:Q8TB72
CleanEx:HS_PUM2 Genevestigator:Q8TB72 GermOnline:ENSG00000055917
Uniprot:Q8TB72
Length = 1066
Score = 218 (81.8 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 70/310 (22%), Positives = 139/310 (44%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q+KL +F + ++LM+ +G +V KF E + Q +
Sbjct: 738 QHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALAT 797
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
+I + + LA + +G ++K ++ ++ ++ ++ L + + G+ V+
Sbjct: 798 RI--RGHVLPLA-LQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVV 854
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 855 QKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTE 914
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH- 239
L + + GNYV+QHVL P I +RG + LS K S VV+K + + +
Sbjct: 915 QLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAER 974
Query: 240 -YIVEELL-NSD----QILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQHLA 292
+++E+ +D + + D+Y NYV+Q + + Q ++ +H K++ H+
Sbjct: 975 ALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMH-----KIRPHIT 1029
Query: 293 ALRVMKYGSN 302
LR YG +
Sbjct: 1030 TLRKYTYGKH 1039
>RGD|1311024 [details] [associations]
symbol:Pum2 "pumilio homolog 2 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 RGD:1311024
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
IPI:IPI00950922 Ensembl:ENSRNOT00000064843 ArrayExpress:D4A0R8
Uniprot:D4A0R8
Length = 904
Score = 216 (81.1 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 70/310 (22%), Positives = 139/310 (44%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q+KL +F + ++LM+ +G +V KF E + Q +
Sbjct: 576 QHGSRFIQQKLERATPAERQMVFNEIVQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALAN 635
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
+I + + LA + +G ++K ++ ++ ++ ++ L + + G+ V+
Sbjct: 636 RI--RGHVLPLA-LQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVV 692
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 693 QKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTE 752
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH- 239
L + + GNYV+QHVL P I +RG + LS K S VV+K + + +
Sbjct: 753 QLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAER 812
Query: 240 -YIVEELL-NSD----QILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQHLA 292
+++E+ +D + + D+Y NYV+Q + + Q ++ +H K++ H+
Sbjct: 813 ALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMH-----KIRPHIT 867
Query: 293 ALRVMKYGSN 302
LR YG +
Sbjct: 868 TLRKYTYGKH 877
>MGI|MGI:1931749 [details] [associations]
symbol:Pum1 "pumilio 1 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931749
GO:GO:0005737 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099
GeneTree:ENSGT00390000017241 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK OrthoDB:EOG4P8FHP ChiTaRS:PUM1
EMBL:AF321909 EMBL:AK122205 EMBL:AK052145 EMBL:BC048174
EMBL:BC050747 IPI:IPI00330262 IPI:IPI00400349 IPI:IPI00400350
IPI:IPI00400351 RefSeq:NP_001153075.1 RefSeq:NP_001153076.1
RefSeq:NP_001153077.1 RefSeq:NP_001153078.1 RefSeq:NP_109647.2
UniGene:Mm.440206 ProteinModelPortal:Q80U78 SMR:Q80U78
IntAct:Q80U78 STRING:Q80U78 PhosphoSite:Q80U78 PaxDb:Q80U78
PRIDE:Q80U78 Ensembl:ENSMUST00000030315 Ensembl:ENSMUST00000097862
Ensembl:ENSMUST00000097864 GeneID:80912 KEGG:mmu:80912
UCSC:uc008uzl.2 InParanoid:Q80U78 NextBio:350286 Bgee:Q80U78
CleanEx:MM_PUM1 Genevestigator:Q80U78 Uniprot:Q80U78
Length = 1189
Score = 217 (81.4 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 75/311 (24%), Positives = 142/311 (45%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIE-SCNESQLALII 59
+ GS+++Q KL + +F + ++LM +G +V KF E +E +LAL
Sbjct: 861 QHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSHEQKLALAE 920
Query: 60 LKITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSV 119
+I + + LA + +G ++K ++ + ++ ++ L + + G+ V
Sbjct: 921 -RI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHV 976
Query: 120 ILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNA 179
+ KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 977 VQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHT 1036
Query: 180 ASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH 239
L + + GNYV+QHVL P I +RG+ + LS K S VV+K + + +
Sbjct: 1037 EQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTE 1096
Query: 240 --YIVEEL--LNS---DQILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQHL 291
+++E+ +N + + D+Y NYV+Q + V Q ++ +H K++ H+
Sbjct: 1097 RAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMH-----KIRPHI 1151
Query: 292 AALRVMKYGSN 302
A LR YG +
Sbjct: 1152 ATLRKYTYGKH 1162
>MGI|MGI:1931751 [details] [associations]
symbol:Pum2 "pumilio 2 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0030425
"dendrite" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO;IDA] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931751 GO:GO:0048471
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0043025 GO:GO:0030425 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HOGENOM:HOG000238461 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP CTD:23369
ChiTaRS:PUM2 EMBL:AY027917 EMBL:AF315590 EMBL:AK122225
EMBL:BC013765 EMBL:BC041773 IPI:IPI00112203 IPI:IPI00400191
IPI:IPI00400192 RefSeq:NP_001153691.1 RefSeq:NP_001153694.1
RefSeq:NP_109648.2 UniGene:Mm.341243 PDB:3GVO PDB:3GVT PDBsum:3GVO
PDBsum:3GVT ProteinModelPortal:Q80U58 SMR:Q80U58 IntAct:Q80U58
STRING:Q80U58 PhosphoSite:Q80U58 PaxDb:Q80U58 PRIDE:Q80U58
Ensembl:ENSMUST00000163569 Ensembl:ENSMUST00000168361
Ensembl:ENSMUST00000169089 Ensembl:ENSMUST00000178015 GeneID:80913
KEGG:mmu:80913 UCSC:uc007mzw.2 UCSC:uc007mzy.2 UCSC:uc007naa.2
InParanoid:Q80U58 OMA:LFDYSSQ EvolutionaryTrace:Q80U58
NextBio:350290 Bgee:Q80U58 CleanEx:MM_PUM2 Genevestigator:Q80U58
GermOnline:ENSMUSG00000020594 Uniprot:Q80U58
Length = 1066
Score = 216 (81.1 bits), Expect = 3.5e-15, P = 3.5e-15
Identities = 70/310 (22%), Positives = 139/310 (44%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q+KL +F + ++LM+ +G +V KF E + Q +
Sbjct: 738 QHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALAT 797
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
+I + + LA + +G ++K ++ ++ ++ ++ L + + G+ V+
Sbjct: 798 RI--RGHVLPLA-LQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVV 854
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 855 QKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTE 914
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH- 239
L + + GNYV+QHVL P I +RG + LS K S VV+K + + +
Sbjct: 915 QLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAER 974
Query: 240 -YIVEELL-NSD----QILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQHLA 292
+++E+ +D + + D+Y NYV+Q + + Q ++ +H K++ H+
Sbjct: 975 ALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMH-----KIRPHIT 1029
Query: 293 ALRVMKYGSN 302
LR YG +
Sbjct: 1030 TLRKYTYGKH 1039
>UNIPROTKB|H0YDK8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000498419 Uniprot:H0YDK8
Length = 900
Score = 211 (79.3 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 72/310 (23%), Positives = 138/310 (44%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q KL +F + ++LM +G +V KF E + Q +
Sbjct: 572 QHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAE 631
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
+I + + LA + +G ++K ++ + ++ ++ L + + G+ V+
Sbjct: 632 RI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVV 688
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 689 QKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTE 748
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH- 239
L + + GNYV+QHVL P I +RG+ + LS K S VV+K + + +
Sbjct: 749 QLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTER 808
Query: 240 -YIVEEL--LNS---DQILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQHLA 292
+++E+ +N + + D+Y NYV+Q + V Q ++ +H K++ H+A
Sbjct: 809 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMH-----KIRPHIA 863
Query: 293 ALRVMKYGSN 302
LR YG +
Sbjct: 864 TLRKYTYGKH 873
>UNIPROTKB|F6XHY4 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 GeneTree:ENSGT00390000017241
OMA:RHVVGVK Ensembl:ENSCAFT00000017823 EMBL:AAEX03001673
Uniprot:F6XHY4
Length = 1162
Score = 212 (79.7 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 72/310 (23%), Positives = 138/310 (44%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q KL +F + ++LM +G +V KF E + Q +
Sbjct: 834 QHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAE 893
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
+I + + LA + +G ++K ++ + ++ ++ L + + G+ V+
Sbjct: 894 RI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVV 950
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 951 QKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTE 1010
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH- 239
L + + GNYV+QHVL P I +RG+ + LS K S VV+K + + +
Sbjct: 1011 QLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTER 1070
Query: 240 -YIVEEL--LNS---DQILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQHLA 292
+++E+ +N + + D+Y NYV+Q + V Q ++ +H K++ H+A
Sbjct: 1071 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMH-----KIRPHIA 1125
Query: 293 ALRVMKYGSN 302
LR YG +
Sbjct: 1126 TLRKYTYGKH 1135
>UNIPROTKB|E2QVA9 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 CTD:9698 RefSeq:XP_852168.1
Ensembl:ENSCAFT00000017823 GeneID:478158 KEGG:cfa:478158
NextBio:20853526 Uniprot:E2QVA9
Length = 1224
Score = 212 (79.7 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 72/310 (23%), Positives = 138/310 (44%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q KL +F + ++LM +G +V KF E + Q +
Sbjct: 896 QHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAE 955
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
+I + + LA + +G ++K ++ + ++ ++ L + + G+ V+
Sbjct: 956 RI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVV 1012
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 1013 QKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTE 1072
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH- 239
L + + GNYV+QHVL P I +RG+ + LS K S VV+K + + +
Sbjct: 1073 QLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTER 1132
Query: 240 -YIVEEL--LNS---DQILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQHLA 292
+++E+ +N + + D+Y NYV+Q + V Q ++ +H K++ H+A
Sbjct: 1133 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMH-----KIRPHIA 1187
Query: 293 ALRVMKYGSN 302
LR YG +
Sbjct: 1188 TLRKYTYGKH 1197
>UNIPROTKB|E7EWT3 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00939543 ProteinModelPortal:E7EWT3 SMR:E7EWT3
Ensembl:ENST00000423018 UCSC:uc010oga.1 ArrayExpress:E7EWT3
Bgee:E7EWT3 Uniprot:E7EWT3
Length = 1044
Score = 211 (79.3 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 72/310 (23%), Positives = 138/310 (44%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q KL +F + ++LM +G +V KF E + Q +
Sbjct: 716 QHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAE 775
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
+I + + LA + +G ++K ++ + ++ ++ L + + G+ V+
Sbjct: 776 RI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVV 832
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 833 QKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTE 892
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH- 239
L + + GNYV+QHVL P I +RG+ + LS K S VV+K + + +
Sbjct: 893 QLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTER 952
Query: 240 -YIVEEL--LNS---DQILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQHLA 292
+++E+ +N + + D+Y NYV+Q + V Q ++ +H K++ H+A
Sbjct: 953 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMH-----KIRPHIA 1007
Query: 293 ALRVMKYGSN 302
LR YG +
Sbjct: 1008 TLRKYTYGKH 1017
>UNIPROTKB|F1NV23 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00735100 Ensembl:ENSGALT00000026590 Uniprot:F1NV23
Length = 1061
Score = 211 (79.3 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 72/310 (23%), Positives = 138/310 (44%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q+KL +F + ++LM+ +G +V KF E + Q +
Sbjct: 735 QHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALAT 794
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
+I + + LA + +G ++K ++ + SP ++ L + + G+ V+
Sbjct: 795 RI--RGHVLPLA-LQMYGCRVIQKALESI--SPDQQNEMVKELDGHVLKCVKDQNGNHVV 849
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 850 QKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTE 909
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH- 239
L + + GNYV+QHVL P I +RG + LS K S VV+K + + +
Sbjct: 910 QLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAER 969
Query: 240 -YIVEELL-NSD----QILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQHLA 292
+++E+ +D + + D+Y NYV+Q + + Q ++ +H K++ H+
Sbjct: 970 ALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMH-----KIRPHIT 1024
Query: 293 ALRVMKYGSN 302
LR YG +
Sbjct: 1025 TLRKYTYGKH 1034
>UNIPROTKB|E1BWC0 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0034063 "stress
granule assembly" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00682927 Ensembl:ENSGALT00000026591 Uniprot:E1BWC0
Length = 1062
Score = 211 (79.3 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 72/310 (23%), Positives = 138/310 (44%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q+KL +F + ++LM+ +G +V KF E + Q +
Sbjct: 736 QHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALAT 795
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
+I + + LA + +G ++K ++ + SP ++ L + + G+ V+
Sbjct: 796 RI--RGHVLPLA-LQMYGCRVIQKALESI--SPDQQNEMVKELDGHVLKCVKDQNGNHVV 850
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 851 QKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTE 910
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH- 239
L + + GNYV+QHVL P I +RG + LS K S VV+K + + +
Sbjct: 911 QLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAER 970
Query: 240 -YIVEELL-NSD----QILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQHLA 292
+++E+ +D + + D+Y NYV+Q + + Q ++ +H K++ H+
Sbjct: 971 ALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMH-----KIRPHIT 1025
Query: 293 ALRVMKYGSN 302
LR YG +
Sbjct: 1026 TLRKYTYGKH 1035
>UNIPROTKB|E9PCJ0 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 CTD:9698 EMBL:AL356320 EMBL:AL445235
RefSeq:NP_001018494.1 UniGene:Hs.281707 DNASU:9698 GeneID:9698
KEGG:hsa:9698 HGNC:HGNC:14957 ChiTaRS:PUM1 GenomeRNAi:9698
NextBio:36439 IPI:IPI00941275 ProteinModelPortal:E9PCJ0 SMR:E9PCJ0
Ensembl:ENST00000426105 UCSC:uc001bsh.1 ArrayExpress:E9PCJ0
Bgee:E9PCJ0 Uniprot:E9PCJ0
Length = 1188
Score = 211 (79.3 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 72/310 (23%), Positives = 138/310 (44%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q KL +F + ++LM +G +V KF E + Q +
Sbjct: 860 QHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAE 919
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
+I + + LA + +G ++K ++ + ++ ++ L + + G+ V+
Sbjct: 920 RI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVV 976
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 977 QKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTE 1036
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH- 239
L + + GNYV+QHVL P I +RG+ + LS K S VV+K + + +
Sbjct: 1037 QLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTER 1096
Query: 240 -YIVEEL--LNS---DQILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQHLA 292
+++E+ +N + + D+Y NYV+Q + V Q ++ +H K++ H+A
Sbjct: 1097 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMH-----KIRPHIA 1151
Query: 293 ALRVMKYGSN 302
LR YG +
Sbjct: 1152 TLRKYTYGKH 1161
>UNIPROTKB|Q2VB19 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HSSP:Q14671 EMBL:DQ275191 EMBL:AJ851393 IPI:IPI00581936
IPI:IPI00682137 RefSeq:NP_001012858.1 UniGene:Gga.22920
ProteinModelPortal:Q2VB19 SMR:Q2VB19 Ensembl:ENSGALT00000000834
Ensembl:ENSGALT00000035201 GeneID:419554 KEGG:gga:419554 CTD:9698
HOGENOM:HOG000238461 HOVERGEN:HBG049462 InParanoid:Q2VB19
OMA:RHVVGVK OrthoDB:EOG4P8FHP NextBio:20822590 Uniprot:Q2VB19
Length = 1189
Score = 211 (79.3 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 72/310 (23%), Positives = 138/310 (44%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q KL +F + ++LM +G +V KF E + Q +
Sbjct: 861 QHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAE 920
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
+I + + LA + +G ++K ++ + ++ ++ L + + G+ V+
Sbjct: 921 RI--RGHVLSLA-LQMYGCRVIQKALEFIPPDQQVINEMVRELDGHVLKCVKDQNGNHVV 977
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 978 QKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTLPILEELHQHTE 1037
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH- 239
L + + GNYV+QHVL P I +RG+ + LS K S VV+K + + +
Sbjct: 1038 QLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTER 1097
Query: 240 -YIVEEL--LNS---DQILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQHLA 292
+++E+ +N + + D+Y NYV+Q + V Q ++ +H K++ H+A
Sbjct: 1098 AMLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMH-----KIRPHIA 1152
Query: 293 ALRVMKYGSN 302
LR YG +
Sbjct: 1153 TLRKYTYGKH 1162
>UNIPROTKB|Q5T1Z4 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461 HOVERGEN:HBG049462
OrthoDB:EOG4P8FHP EMBL:AL356320 EMBL:AL445235 UniGene:Hs.281707
HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00646054 SMR:Q5T1Z4
STRING:Q5T1Z4 Ensembl:ENST00000373747 UCSC:uc001bsf.1
Uniprot:Q5T1Z4
Length = 1189
Score = 211 (79.3 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 72/310 (23%), Positives = 138/310 (44%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q KL +F + ++LM +G +V KF E + Q +
Sbjct: 861 QHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAE 920
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
+I + + LA + +G ++K ++ + ++ ++ L + + G+ V+
Sbjct: 921 RI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVV 977
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 978 QKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTE 1037
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH- 239
L + + GNYV+QHVL P I +RG+ + LS K S VV+K + + +
Sbjct: 1038 QLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTER 1097
Query: 240 -YIVEEL--LNS---DQILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQHLA 292
+++E+ +N + + D+Y NYV+Q + V Q ++ +H K++ H+A
Sbjct: 1098 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMH-----KIRPHIA 1152
Query: 293 ALRVMKYGSN 302
LR YG +
Sbjct: 1153 TLRKYTYGKH 1162
>UNIPROTKB|Q5T1Z8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1 (Drosophila), isoform CRA_c"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00032355
SMR:Q5T1Z8 STRING:Q5T1Z8 Ensembl:ENST00000373741 UCSC:uc001bsk.1
Uniprot:Q5T1Z8
Length = 1224
Score = 211 (79.3 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 72/310 (23%), Positives = 138/310 (44%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q KL +F + ++LM +G +V KF E + Q +
Sbjct: 896 QHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAE 955
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
+I + + LA + +G ++K ++ + ++ ++ L + + G+ V+
Sbjct: 956 RI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVV 1012
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 1013 QKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTE 1072
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH- 239
L + + GNYV+QHVL P I +RG+ + LS K S VV+K + + +
Sbjct: 1073 QLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTER 1132
Query: 240 -YIVEEL--LNS---DQILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQHLA 292
+++E+ +N + + D+Y NYV+Q + V Q ++ +H K++ H+A
Sbjct: 1133 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMH-----KIRPHIA 1187
Query: 293 ALRVMKYGSN 302
LR YG +
Sbjct: 1188 TLRKYTYGKH 1197
>CGD|CAL0004399 [details] [associations]
symbol:orf19.5381 species:5476 "Candida albicans" [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0001308 "negative
regulation of chromatin silencing involved in replicative cell
aging" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
CGD:CAL0004399 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AACQ01000050 RefSeq:XP_717758.1
ProteinModelPortal:Q5A835 GeneID:3640530 KEGG:cal:CaO19.5381
Uniprot:Q5A835
Length = 783
Score = 208 (78.3 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 84/308 (27%), Positives = 142/308 (46%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCN-ESQLALI- 58
+ G ++LQ +L + + L +F + ELM +G ++ K N E +L LI
Sbjct: 455 QHGCRFLQRELINETNATL--IFNEIYFKAVELMIDPFGNYLIQKLFTMINLEQRLVLIN 512
Query: 59 -----ILKITFQDQ--LFLLASVDKFGSSSVKKLI------KVVAQSPPLL-YHVMSALK 104
+ +I L +D ++ ++I +V S L HV+ K
Sbjct: 513 QCSNELFRIALDPHGTRSLQKLIDVIETNEEIEIITRNLYSNIVVLSRDLNGNHVVQ--K 570
Query: 105 RLFKFLMMTKPGSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMK 164
L KF ++ +S + ++N FI+ + LY+ACH GC L +D
Sbjct: 571 ILTKFNTISSDSNSSDSNRDGAQHQNQNQFIFDIIQANLLYIACHRHGCCVLQRCLDYGN 630
Query: 165 GSRRKQILHLISVNAASLSRHRSGNYVVQHVLNL---------EDPFLIDAICFALRGHY 215
+ +Q+ I+ + LS GNYVVQ+VLN D +ID I ++ ++
Sbjct: 631 KQQCQQLSQEIAKHTIKLSLDPYGNYVVQYVLNKYSVGGDAQNTDNQVIDIIIQEIKSNF 690
Query: 216 VDLSLTKCGSFVVQKFLKYQNAVHYIVEELLNSDQ---ILQVASDKYGNYVIQTAL-VET 271
+ LSL K GS V++K LK + +++ L+ D Q+ +D +GNYV+QT+L V
Sbjct: 691 IQLSLHKFGSNVIEKCLKISSISKDLIDNLIVLDHGQAFNQLLNDPFGNYVLQTSLDVAN 750
Query: 272 MRQ-DRLS 278
+ Q ++LS
Sbjct: 751 LEQFEQLS 758
>ZFIN|ZDB-GENE-030131-2074 [details] [associations]
symbol:pum1 "pumilio homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 ZFIN:ZDB-GENE-030131-2074 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01057427 EMBL:CABZ01093012
EMBL:CU207343 IPI:IPI00995409 Ensembl:ENSDART00000122308
ArrayExpress:E7FFV0 Bgee:E7FFV0 Uniprot:E7FFV0
Length = 1154
Score = 209 (78.6 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 75/314 (23%), Positives = 142/314 (45%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q KL +F + ++LM +G +V KF E + Q +
Sbjct: 825 QHGSRFIQLKLERASPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLDQKLALAE 884
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
+I + + LA + +G ++K ++ + ++ ++ L + + G+ V+
Sbjct: 885 RI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVV 941
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLY-LACHEQGCINLNNFIDNMKGSRRKQILHLISVNA 179
KC+E H FI A ++ L+ H GC + +++ + IL I +
Sbjct: 942 QKCIECVQPHALQFIIDAFKGQQVFALSTHPYGCRVIQRILEHCLPEQTLSILEEIHQHT 1001
Query: 180 ASLSRHRSGNYVVQHVLN---LEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQN 236
L + + GNYV+QHVL ED I +RG+ + LS K S VV+K + +
Sbjct: 1002 EQLVQDQYGNYVIQHVLEHGRAEDK---SKIVSEIRGNVLGLSQHKFASNVVEKCVTHSL 1058
Query: 237 AVH--YIVEELLN-SD----QILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQ 288
+++E+ + +D + + D+Y NYV+Q + V Q ++ +H K++
Sbjct: 1059 RAERAMLIDEVCSMADGPHSALYTMMKDQYANYVVQKMIDVAEPTQRKIVMH-----KIR 1113
Query: 289 QHLAALRVMKYGSN 302
H+A LR YG +
Sbjct: 1114 PHIATLRKYTYGKH 1127
>UNIPROTKB|F1N2B8 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:DAAA02031737
IPI:IPI00703675 Ensembl:ENSBTAT00000014813 Uniprot:F1N2B8
Length = 1069
Score = 206 (77.6 bits), Expect = 7.5e-14, P = 7.5e-14
Identities = 71/312 (22%), Positives = 141/312 (45%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q+KL +F + ++LM+ +G +V KF E + Q +
Sbjct: 743 QHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALAT 802
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVA--QSPPLLYHVMSALKRLFKFLMMTKPGSS 118
+I + + LA + +G ++K ++ ++ Q ++ + + + K + G+
Sbjct: 803 RI--RGHVLPLA-LQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVK----DQNGNH 855
Query: 119 VILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVN 178
V+ KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 856 VVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQH 915
Query: 179 AASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAV 238
L + + GNYV+QHVL P I +RG + LS K S VV+K + + +
Sbjct: 916 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRA 975
Query: 239 H--YIVEELL-NSD----QILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQH 290
+++E+ +D + + D+Y NYV+Q + + Q ++ +H K++ H
Sbjct: 976 ERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMH-----KIRPH 1030
Query: 291 LAALRVMKYGSN 302
++ LR YG +
Sbjct: 1031 ISTLRKYTYGKH 1042
>UNIPROTKB|B4E2B6 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AC007041
UniGene:Hs.467824 HGNC:HGNC:14958 ChiTaRS:PUM2 EMBL:AK304198
IPI:IPI01009448 SMR:B4E2B6 STRING:B4E2B6 Ensembl:ENST00000536417
UCSC:uc010yjz.1 Uniprot:B4E2B6
Length = 1008
Score = 205 (77.2 bits), Expect = 9.5e-14, P = 9.5e-14
Identities = 71/312 (22%), Positives = 140/312 (44%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q+KL +F + ++LM+ +G +V KF E + Q +
Sbjct: 682 QHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALAT 741
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVA--QSPPLLYHVMSALKRLFKFLMMTKPGSS 118
+I + + LA + +G ++K ++ ++ Q ++ + + + K + G+
Sbjct: 742 RI--RGHVLPLA-LQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVK----DQNGNH 794
Query: 119 VILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVN 178
V+ KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 795 VVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQH 854
Query: 179 AASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAV 238
L + + GNYV+QHVL P I +RG + LS K S VV+K + + +
Sbjct: 855 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRA 914
Query: 239 H--YIVEELL-NSD----QILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQH 290
+++E+ +D + + D+Y NYV+Q + + Q ++ +H K++ H
Sbjct: 915 ERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMH-----KIRPH 969
Query: 291 LAALRVMKYGSN 302
+ LR YG +
Sbjct: 970 ITTLRKYTYGKH 981
>UNIPROTKB|E2RT57 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 CTD:23369 OMA:LFDYSSQ
EMBL:AAEX03010760 RefSeq:XP_849088.1 Ensembl:ENSCAFT00000006180
GeneID:607618 KEGG:cfa:607618 Uniprot:E2RT57
Length = 1063
Score = 205 (77.2 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 71/312 (22%), Positives = 140/312 (44%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q+KL +F + ++LM+ +G +V KF E + Q +
Sbjct: 737 QHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALAT 796
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVA--QSPPLLYHVMSALKRLFKFLMMTKPGSS 118
+I + + LA + +G ++K ++ ++ Q ++ + + + K + G+
Sbjct: 797 RI--RGHVLPLA-LQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVK----DQNGNH 849
Query: 119 VILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVN 178
V+ KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 850 VVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQH 909
Query: 179 AASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAV 238
L + + GNYV+QHVL P I +RG + LS K S VV+K + + +
Sbjct: 910 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRA 969
Query: 239 H--YIVEELL-NSD----QILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQH 290
+++E+ +D + + D+Y NYV+Q + + Q ++ +H K++ H
Sbjct: 970 ERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMH-----KIRPH 1024
Query: 291 LAALRVMKYGSN 302
+ LR YG +
Sbjct: 1025 ITTLRKYTYGKH 1036
>UNIPROTKB|F1SCU6 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AEMK01186664
EMBL:CU466989 Ensembl:ENSSSCT00000009411 Uniprot:F1SCU6
Length = 1064
Score = 205 (77.2 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 71/312 (22%), Positives = 140/312 (44%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q+KL +F + ++LM+ +G +V KF E + Q +
Sbjct: 738 QHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALAT 797
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVA--QSPPLLYHVMSALKRLFKFLMMTKPGSS 118
+I + + LA + +G ++K ++ ++ Q ++ + + + K + G+
Sbjct: 798 RI--RGHVLPLA-LQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVK----DQNGNH 850
Query: 119 VILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVN 178
V+ KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 851 VVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQH 910
Query: 179 AASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAV 238
L + + GNYV+QHVL P I +RG + LS K S VV+K + + +
Sbjct: 911 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRA 970
Query: 239 H--YIVEELL-NSD----QILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQH 290
+++E+ +D + + D+Y NYV+Q + + Q ++ +H K++ H
Sbjct: 971 ERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMH-----KIRPH 1025
Query: 291 LAALRVMKYGSN 302
+ LR YG +
Sbjct: 1026 ITTLRKYTYGKH 1037
>RGD|1307190 [details] [associations]
symbol:Pum1 "pumilio homolog 1 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 RGD:1307190 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 IPI:IPI00776810
Ensembl:ENSRNOT00000056233 UCSC:RGD:1307190 ArrayExpress:D3ZHQ4
Uniprot:D3ZHQ4
Length = 944
Score = 204 (76.9 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 75/313 (23%), Positives = 141/313 (45%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIE-SCNESQLALII 59
+ GS+++Q KL + +F + ++LM +G +V KF E +E +LAL
Sbjct: 618 QHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSHEQKLALAE 677
Query: 60 LKITFQDQLFLLASVDKFGSSSVKKLIKVVA--QSPPLLYHVMSALKRLFKFLMMTKPGS 117
+ + LA + +G ++K ++ + Q ++ + + + K + G+
Sbjct: 678 ---RIRGHVLSLA-LQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVK----DQNGN 729
Query: 118 SVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISV 177
V+ KC+E FI A L+ H GC + +++ + IL +
Sbjct: 730 HVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQ 789
Query: 178 NAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNA 237
+ L + + GNYV+QHVL P I +RG+ + LS K S VV+K + + +
Sbjct: 790 HTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASR 849
Query: 238 VH--YIVEEL--LNS---DQILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQ 289
+++E+ +N + + D+Y NYV+Q + V Q ++ +H K++
Sbjct: 850 TERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMH-----KIRP 904
Query: 290 HLAALRVMKYGSN 302
H+A LR YG +
Sbjct: 905 HIATLRKYTYGKH 917
>WB|WBGene00004244 [details] [associations]
symbol:puf-8 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0007276 "gamete
generation" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0040022 "feminization of hermaphroditic
germ-line" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0007140 "male meiosis" evidence=IMP] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0007283 GO:GO:0003723
GO:GO:0042127 GO:GO:0007140 GO:GO:0040027 GO:GO:0040020
GO:GO:0040022 GO:GO:0043186 eggNOG:COG5099
GeneTree:ENSGT00680000100664 EMBL:FO080733 PIR:T15717
RefSeq:NP_495523.3 ProteinModelPortal:Q09487 SMR:Q09487
DIP:DIP-27165N MINT:MINT-1110716 STRING:Q09487 PaxDb:Q09487
EnsemblMetazoa:C30G12.7 GeneID:174197 KEGG:cel:CELE_C30G12.7
UCSC:C30G12.7 CTD:174197 WormBase:C30G12.7 InParanoid:Q09487
OMA:KDSIFDE NextBio:882961 Uniprot:Q09487
Length = 535
Score = 198 (74.8 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 73/314 (23%), Positives = 147/314 (46%)
Query: 3 GSQYLQEKLSSGDSRI-LDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILK 61
GS+++Q++L+S R D +F V EL+ +G +V KF E E A ++
Sbjct: 208 GSRFIQQELASSKDRFEKDSIFDEVVSNADELVDDIFGNYVVQKFFEYGEERHWARLVDA 267
Query: 62 ITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVIL 121
I D++ A + ++K ++ + + PL ++S ++ + M + G+ V+
Sbjct: 268 II--DRVPEYA-FQMYACRVLQKALEKINE--PLQIKILSQIRHVIHRCMKDQNGNHVVQ 322
Query: 122 KCLEPSYNHKNDFIYQAALE--HCLY-LACHEQGCINLNNFIDNMKGSRRKQILHLISVN 178
K +E FI LE + +Y ++ GC + +++ S+ K ++ I
Sbjct: 323 KAIEKVSPQYVQFIVDTLLESSNTIYEMSVDPYGCRVVQRCLEHCSPSQTKPVIGQIHKR 382
Query: 179 AASLSRHRSGNYVVQHVLN--LEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQN 236
++ ++ GNYVVQHV+ E+ ++ I + + + + K S V++K L+ Q
Sbjct: 383 FDEIANNQYGNYVVQHVIEHGSEEDRMV--IVTRVSNNLFEFATHKYSSNVIEKCLE-QG 439
Query: 237 AVHY---IVEELLNSDQ-----ILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQ 288
AV++ IV + + ++Q+ D+Y NYV+Q + + R + L+ ++
Sbjct: 440 AVYHKSMIVGAACHHQEGSVPIVVQMMKDQYANYVVQKMFDQVTSEQR----RELILTVR 495
Query: 289 QHLAALRVMKYGSN 302
H+ LR +G +
Sbjct: 496 PHIPVLRQFPHGKH 509
>UNIPROTKB|F1STL2 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:CU928875
Ensembl:ENSSSCT00000003986 OMA:ANHVVEF Uniprot:F1STL2
Length = 735
Score = 199 (75.1 bits), Expect = 3.3e-13, P = 3.3e-13
Identities = 73/312 (23%), Positives = 139/312 (44%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q KL +F + ++LM +G +V KF E + Q +
Sbjct: 409 QHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAE 468
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVA--QSPPLLYHVMSALKRLFKFLMMTKPGSS 118
+I + + LA + +G ++K ++ + Q ++ + + + K + G+
Sbjct: 469 RI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVK----DQNGNH 521
Query: 119 VILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVN 178
V+ KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 522 VVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQH 581
Query: 179 AASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAV 238
L + + GNYV+QHVL P I +RG+ + LS K S VV+K + + +
Sbjct: 582 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRT 641
Query: 239 H--YIVEEL--LNS---DQILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQH 290
+++E+ +N + + D+Y NYV+Q + V Q ++ +H K++ H
Sbjct: 642 ERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMH-----KIRPH 696
Query: 291 LAALRVMKYGSN 302
+A LR YG +
Sbjct: 697 IATLRKYTYGKH 708
>UNIPROTKB|E9PR38 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00909786 ProteinModelPortal:E9PR38 SMR:E9PR38
Ensembl:ENST00000424085 ArrayExpress:E9PR38 Bgee:E9PR38
Uniprot:E9PR38
Length = 944
Score = 198 (74.8 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 73/312 (23%), Positives = 139/312 (44%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q KL +F + ++LM +G +V KF E + Q +
Sbjct: 618 QHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAE 677
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVA--QSPPLLYHVMSALKRLFKFLMMTKPGSS 118
+I + + LA + +G ++K ++ + Q ++ + + + K + G+
Sbjct: 678 RI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVK----DQNGNH 730
Query: 119 VILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVN 178
V+ KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 731 VVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQH 790
Query: 179 AASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAV 238
L + + GNYV+QHVL P I +RG+ + LS K S VV+K + + +
Sbjct: 791 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRT 850
Query: 239 H--YIVEEL--LNS---DQILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQH 290
+++E+ +N + + D+Y NYV+Q + V Q ++ +H K++ H
Sbjct: 851 ERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMH-----KIRPH 905
Query: 291 LAALRVMKYGSN 302
+A LR YG +
Sbjct: 906 IATLRKYTYGKH 917
>UNIPROTKB|E1BE82 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 CTD:9698 OMA:RHVVGVK
EMBL:DAAA02006263 EMBL:DAAA02006264 EMBL:DAAA02006265
IPI:IPI00713931 RefSeq:NP_001180052.1 UniGene:Bt.44441
Ensembl:ENSBTAT00000025262 GeneID:535450 KEGG:bta:535450
NextBio:20876753 Uniprot:E1BE82
Length = 1186
Score = 199 (75.1 bits), Expect = 6.5e-13, P = 6.5e-13
Identities = 73/312 (23%), Positives = 139/312 (44%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q KL +F + ++LM +G +V KF E + Q +
Sbjct: 860 QHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAE 919
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVA--QSPPLLYHVMSALKRLFKFLMMTKPGSS 118
+I + + LA + +G ++K ++ + Q ++ + + + K + G+
Sbjct: 920 RI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVK----DQNGNH 972
Query: 119 VILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVN 178
V+ KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 973 VVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQH 1032
Query: 179 AASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAV 238
L + + GNYV+QHVL P I +RG+ + LS K S VV+K + + +
Sbjct: 1033 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRT 1092
Query: 239 H--YIVEEL--LNS---DQILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQH 290
+++E+ +N + + D+Y NYV+Q + V Q ++ +H K++ H
Sbjct: 1093 ERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMH-----KIRPH 1147
Query: 291 LAALRVMKYGSN 302
+A LR YG +
Sbjct: 1148 IATLRKYTYGKH 1159
>UNIPROTKB|H0YEH2 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000525843 Uniprot:H0YEH2
Length = 1125
Score = 198 (74.8 bits), Expect = 7.9e-13, P = 7.9e-13
Identities = 73/312 (23%), Positives = 139/312 (44%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q KL +F + ++LM +G +V KF E + Q +
Sbjct: 799 QHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAE 858
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVA--QSPPLLYHVMSALKRLFKFLMMTKPGSS 118
+I + + LA + +G ++K ++ + Q ++ + + + K + G+
Sbjct: 859 RI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVK----DQNGNH 911
Query: 119 VILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVN 178
V+ KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 912 VVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQH 971
Query: 179 AASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAV 238
L + + GNYV+QHVL P I +RG+ + LS K S VV+K + + +
Sbjct: 972 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRT 1031
Query: 239 H--YIVEEL--LNS---DQILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQH 290
+++E+ +N + + D+Y NYV+Q + V Q ++ +H K++ H
Sbjct: 1032 ERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMH-----KIRPH 1086
Query: 291 LAALRVMKYGSN 302
+A LR YG +
Sbjct: 1087 IATLRKYTYGKH 1098
>UNIPROTKB|B4DG92 [details] [associations]
symbol:PUM1 "cDNA FLJ56067, highly similar to Pumilio
homolog 1" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
HOGENOM:HOG000238461 HOVERGEN:HBG049462 EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 EMBL:AK294477
IPI:IPI00939543 SMR:B4DG92 STRING:B4DG92 Ensembl:ENST00000373742
UCSC:uc010ogb.1 Uniprot:B4DG92
Length = 1127
Score = 198 (74.8 bits), Expect = 7.9e-13, P = 7.9e-13
Identities = 73/312 (23%), Positives = 139/312 (44%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q KL +F + ++LM +G +V KF E + Q +
Sbjct: 801 QHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAE 860
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVA--QSPPLLYHVMSALKRLFKFLMMTKPGSS 118
+I + + LA + +G ++K ++ + Q ++ + + + K + G+
Sbjct: 861 RI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVK----DQNGNH 913
Query: 119 VILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVN 178
V+ KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 914 VVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQH 973
Query: 179 AASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAV 238
L + + GNYV+QHVL P I +RG+ + LS K S VV+K + + +
Sbjct: 974 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRT 1033
Query: 239 H--YIVEEL--LNS---DQILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQH 290
+++E+ +N + + D+Y NYV+Q + V Q ++ +H K++ H
Sbjct: 1034 ERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMH-----KIRPH 1088
Query: 291 LAALRVMKYGSN 302
+A LR YG +
Sbjct: 1089 IATLRKYTYGKH 1100
>UNIPROTKB|Q14671 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS]
[GO:0016044 "cellular membrane organization" evidence=TAS]
Reactome:REACT_11123 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005829 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 GO:GO:0016044
GO:GO:0006892 eggNOG:COG5099 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AF315592 EMBL:D43951
EMBL:AL356320 EMBL:AL445235 EMBL:AK291779 EMBL:BC013398
IPI:IPI00551014 IPI:IPI00941189 RefSeq:NP_001018494.1
RefSeq:NP_055491.1 UniGene:Hs.281707 PDB:1IB2 PDB:1M8W PDB:1M8X
PDB:1M8Y PDB:1M8Z PDB:2YJY PDB:3BSB PDB:3BSX PDB:3Q0L PDB:3Q0M
PDB:3Q0N PDB:3Q0O PDB:3Q0P PDBsum:1IB2 PDBsum:1M8W PDBsum:1M8X
PDBsum:1M8Y PDBsum:1M8Z PDBsum:2YJY PDBsum:3BSB PDBsum:3BSX
PDBsum:3Q0L PDBsum:3Q0M PDBsum:3Q0N PDBsum:3Q0O PDBsum:3Q0P
ProteinModelPortal:Q14671 SMR:Q14671 DIP:DIP-29082N IntAct:Q14671
MINT:MINT-1199500 STRING:Q14671 PhosphoSite:Q14671 DMDM:41688619
UCD-2DPAGE:Q14671 PaxDb:Q14671 PRIDE:Q14671 DNASU:9698
Ensembl:ENST00000257075 Ensembl:ENST00000440538 GeneID:9698
KEGG:hsa:9698 UCSC:uc001bsi.1 UCSC:uc001bsj.1 GeneCards:GC01M031405
HGNC:HGNC:14957 HPA:HPA027424 MIM:607204 neXtProt:NX_Q14671
PharmGKB:PA34042 PhylomeDB:Q14671 ChiTaRS:PUM1
EvolutionaryTrace:Q14671 GenomeRNAi:9698 NextBio:36439
ArrayExpress:Q14671 Bgee:Q14671 CleanEx:HS_PUM1
Genevestigator:Q14671 GermOnline:ENSG00000134644 Uniprot:Q14671
Length = 1186
Score = 198 (74.8 bits), Expect = 8.5e-13, P = 8.5e-13
Identities = 73/312 (23%), Positives = 139/312 (44%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q KL +F + ++LM +G +V KF E + Q +
Sbjct: 860 QHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAE 919
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVA--QSPPLLYHVMSALKRLFKFLMMTKPGSS 118
+I + + LA + +G ++K ++ + Q ++ + + + K + G+
Sbjct: 920 RI--RGHVLSLA-LQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVK----DQNGNH 972
Query: 119 VILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVN 178
V+ KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 973 VVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQH 1032
Query: 179 AASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAV 238
L + + GNYV+QHVL P I +RG+ + LS K S VV+K + + +
Sbjct: 1033 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRT 1092
Query: 239 H--YIVEEL--LNS---DQILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQH 290
+++E+ +N + + D+Y NYV+Q + V Q ++ +H K++ H
Sbjct: 1093 ERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMH-----KIRPH 1147
Query: 291 LAALRVMKYGSN 302
+A LR YG +
Sbjct: 1148 IATLRKYTYGKH 1159
>WB|WBGene00004245 [details] [associations]
symbol:puf-9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040017 "positive regulation of locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0002009 GO:GO:0005737 GO:GO:0040010 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0040017 GO:GO:0003730 GO:GO:0006402 EMBL:FO081143
eggNOG:COG5099 HSSP:Q14671 GeneTree:ENSGT00680000100664 PIR:T26218
RefSeq:NP_508980.2 ProteinModelPortal:Q23191 SMR:Q23191
STRING:Q23191 PaxDb:Q23191 EnsemblMetazoa:W06B11.2.1
EnsemblMetazoa:W06B11.2.2 GeneID:180850 KEGG:cel:CELE_W06B11.2
UCSC:W06B11.2 CTD:180850 WormBase:W06B11.2 HOGENOM:HOG000020400
InParanoid:Q23191 OMA:TIKPHIA NextBio:911254 Uniprot:Q23191
Length = 703
Score = 195 (73.7 bits), Expect = 9.2e-13, P = 9.2e-13
Identities = 74/320 (23%), Positives = 143/320 (44%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q+KL R +F V ELM+ +G +V KF E N Q ++
Sbjct: 354 QHGSRFIQQKLERASLRDKAAIFTPVLENAEELMTDVFGNYVIQKFFEFGNNEQRNQLVG 413
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
T + + LA + +G ++K ++ V + + ++ ++ + + G+ VI
Sbjct: 414 --TIRGNVMKLA-LQMYGCRVIQKALEYVEEK--YQHEILGEMEGQVLKCVKDQNGNHVI 468
Query: 121 LKCLEPSYNHKNDFIYQAALEHC---LY-LACHEQGCINLNNFIDNMKGSRRKQILHLIS 176
K +E + FI A ++ +Y L+ H GC + ++ +++ +L +
Sbjct: 469 QKVIERVEPERLQFIIDAFTKNNSDNVYTLSVHPYGCRVIQRVLEYCNEEQKQPVLDALQ 528
Query: 177 VNAASLSRHRSGNYVVQHVLNLEDPFLIDAICF-ALRGHYVDLSLTKCGSFVVQKFLKYQ 235
++ L + GNYV+QHV+ P + I + + + K S V++K L +
Sbjct: 529 IHLKQLVLDQYGNYVIQHVIEHGSPSDKEQIVQDVISDDLLKFAQHKFASNVIEKCLTFG 588
Query: 236 NAV--HYIVEELLN-----SDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQ 288
+ I++++ S +LQ+ D + NYV+Q L Q R +++ ++
Sbjct: 589 GHAERNLIIDKVCGDPNDPSPPLLQMMKDPFANYVVQKMLDVADPQHR----KKITLTIK 644
Query: 289 QHLAALRVMKYGSNKEIQKK 308
H+A LR KY K I K
Sbjct: 645 PHIATLR--KYNFGKHILLK 662
>CGD|CAL0000028 [details] [associations]
symbol:MPT5 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045947 "negative regulation of
translational initiation" evidence=IEA] [GO:1900153 "positive
regulation of nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0030674 "protein binding, bridging"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 CGD:CAL0000028
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG5099
RefSeq:XP_722196.1 RefSeq:XP_722310.1 ProteinModelPortal:Q5AKY7
GeneID:3636032 GeneID:3636205 KEGG:cal:CaO19.12458
KEGG:cal:CaO19.4991 Uniprot:Q5AKY7
Length = 938
Score = 194 (73.4 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 83/312 (26%), Positives = 152/312 (48%)
Query: 3 GSQYLQEKLSSG-----DSRI--LDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQL 55
G ++LQ+K+ R+ + +F + +EL+ +G ++ K I CNES L
Sbjct: 295 GCRFLQKKIDESLVPNYQVRLANFEIIFNQIYSHVYELIVDPFGNYLIQKLIVYCNESNL 354
Query: 56 ALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKP 115
L+ ++I Q LF + S+++ G+ +++K+I + S L ++ LK L+
Sbjct: 355 DLL-MEI-LQYNLFQI-SINQHGTRALQKIIDSLNNSHQLGL-LIKGLKPYIIELIKDLN 410
Query: 116 GSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMK----GSRRKQI 171
G+ VI K L FIY + ++ +A H+ GC L ++++ G + I
Sbjct: 411 GNHVIQKILNKYEPPDCQFIYDSIIDDLYIVATHKHGCCVLQKCLNHVTLQQLGEFSRAI 470
Query: 172 LHLISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLT-----KCGSF 226
L N L + GNYV+Q+++++ +D I F + ++V+ ++ K S
Sbjct: 471 LKF--ENFKLLINDQFGNYVLQYLISINS---LD-INFQIFQNFVNFGISNLCNLKFSSN 524
Query: 227 VVQKFLK--YQNA---VHY------IVEELLNSDQILQVASDKYGNYVIQTALVETMRQD 275
VV+KFLK Y N V + ++ +L SD + + +D YGNYVIQT +++ M
Sbjct: 525 VVEKFLKNCYANESVNVSFSNLKFELIYIILVSDLNVLI-NDPYGNYVIQT-MIDIMVNP 582
Query: 276 RLSVHQRLVTKL 287
+++ + KL
Sbjct: 583 QVNYQNNNIDKL 594
>POMBASE|SPAC4G8.03c [details] [associations]
symbol:SPAC4G8.03c "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC4G8.03c GO:GO:0005794 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 PIR:T38847 RefSeq:NP_593062.1
ProteinModelPortal:Q09829 EnsemblFungi:SPAC4G8.03c.1 GeneID:2543684
KEGG:spo:SPAC4G8.03c OrthoDB:EOG4QJVZ9 NextBio:20804690
Uniprot:Q09829
Length = 780
Score = 179 (68.1 bits), Expect = 8.4e-11, P = 8.4e-11
Identities = 64/271 (23%), Positives = 130/271 (47%)
Query: 3 GSQYLQEKLSSGDSRILDKLFWV-VSGFTFELMSGQYGRFVFGK-FIESCNESQLALIIL 60
G +YLQ KL + ++ LF+ + +LM +G ++ K F+ + E +L+++
Sbjct: 476 GCRYLQ-KLLDENPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLFVYASREQKLSMLN- 533
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
+ + + S + +G+ S++ +I + + + + + L L G+ V+
Sbjct: 534 --GIGEGIVDICS-NLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTT-LACDNNGTHVL 589
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
KC+ K + ++ + E+ + LA + GC L +D G ++++++ I +
Sbjct: 590 QKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTNGDIQERLVNSIIKSCL 649
Query: 181 SLSRHRSGNYVVQHVLNLE-DPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAV- 238
L ++ GNY+VQHVL L P+ + I G+ LSL K S +++ ++ +
Sbjct: 650 LLVQNAYGNYLVQHVLELNIQPYT-ERIIEKFFGNICKLSLQKFSSNAIEQCIRTASPST 708
Query: 239 -HYIVEELLNSDQILQVASDKYGNYVIQTAL 268
+++E L+ I Q+ D Y NYV+Q L
Sbjct: 709 REQMLQEFLSFPNIEQLLDDCYANYVMQRFL 739
>POMBASE|SPCC1682.08c [details] [associations]
symbol:SPCC1682.08c "RNA-binding protein Mcp2"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126
"meiosis" evidence=IEP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
PomBase:SPCC1682.08c GO:GO:0007126 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 eggNOG:COG5099
EMBL:AB189990 PIR:T41065 RefSeq:NP_587801.1
ProteinModelPortal:O74438 EnsemblFungi:SPCC1682.08c.1
GeneID:2539137 KEGG:spo:SPCC1682.08c OMA:FNDSANG OrthoDB:EOG4QNR4B
NextBio:20800309 Uniprot:O74438
Length = 703
Score = 171 (65.3 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 76/316 (24%), Positives = 149/316 (47%)
Query: 1 EEGSQYLQEKL--SSGDSR--ILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLA 56
++ S +LQ+KL SS D + I+D ++S LM ++G F+ + E Q+
Sbjct: 373 QQSSIFLQQKLKISSYDMKQNIVDS---IISQI-HPLMLNRFGNFLVQRCFEHGTAPQIR 428
Query: 57 LIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPG 116
+ + LA+ D FG V+K I V + L +M L +M
Sbjct: 429 Q--MGSAMLGNMLKLAT-DPFGCHVVQKAIDNVTEDIKLA--MMDELFLTIDVTIMHHYA 483
Query: 117 SSVILKCLEPS-YNHKNDFIYQA--ALEHCLY-LACHEQGCINLNNFIDNMKGSRRKQIL 172
V K E Y + + + + AL + +A E G + + N +N +++ +
Sbjct: 484 CHVWQKLFETQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVEKDKRECI 543
Query: 173 HLISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFL 232
I + ++R + GN+VVQH++ + + AL V+ S+ + S V++K +
Sbjct: 544 EEIIFHLDGIARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQFASKVIEKAI 603
Query: 233 KY--QNAVHYIVEELLNS--DQ----ILQVASDKYGNYVIQTALVETMRQDRLSVHQRLV 284
K +N + ++++ N+ D+ ++ +ASD+YGNY+IQ + ++ + + ++
Sbjct: 604 KSGPKNFISLYLKQITNARVDRTRQPLIDIASDQYGNYLIQ----QIIQLGQPAEKNLVI 659
Query: 285 TKLQQHLAALRVMKYG 300
T +++H+ +LR KYG
Sbjct: 660 THIKKHMVSLRGSKYG 675
>SGD|S000003146 [details] [associations]
symbol:MPT5 "mRNA-binding protein of the PUF family"
species:4932 "Saccharomyces cerevisiae" [GO:0030674 "protein
binding, bridging" evidence=IPI] [GO:0045947 "negative regulation
of translational initiation" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000003146 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941 GO:GO:0045947
GO:GO:0003729 eggNOG:COG5099 GeneTree:ENSGT00390000017241
EMBL:X83690 EMBL:Z72700 EMBL:D25541 EMBL:D26184 PIR:S64195
RefSeq:NP_011337.1 ProteinModelPortal:P39016 SMR:P39016
DIP:DIP-2271N IntAct:P39016 MINT:MINT-2779525 STRING:P39016
PaxDb:P39016 PRIDE:P39016 EnsemblFungi:YGL178W GeneID:852697
KEGG:sce:YGL178W CYGD:YGL178w HOGENOM:HOG000113640 OMA:ISINQYG
OrthoDB:EOG42NN7Z NextBio:972038 Genevestigator:P39016
GermOnline:YGL178W GO:GO:1900153 Uniprot:P39016
Length = 859
Score = 164 (62.8 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 64/268 (23%), Positives = 122/268 (45%)
Query: 3 GSQYLQEKLS--SGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
G ++LQ+KL S + + D ++ + F +L+ +G ++ K + Q L+I
Sbjct: 224 GCRFLQKKLETPSESNMVRDLMYEQIKPFFLDLILDPFGNYLVQKLCDYLTAEQKTLLIQ 283
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVV---AQSPPLLYHVMSALKRLFKFLMMTKP-- 115
T +F + S++++G+ S++K+I V Q ++ + + + +
Sbjct: 284 --TIYPNVFQI-SINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQEFTSIEQVVTLINDLN 340
Query: 116 GSSVILKCLEPSYNHKNDFIYQAALE--HCLYLACHEQGCINLNNFIDNMKGSRRKQILH 173
G+ VI KC+ K FI A +E + + ++ H+ GC L + + +I
Sbjct: 341 GNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQKLLSVCTLQQIFKISV 400
Query: 174 LISVNAASLSRHRSGNYVVQHVLNLE--DPFLIDAICFALRGHYVDLSLTKCGSFVVQKF 231
I L + GNY++Q +L+++ D +L+ + L LS K S VV+KF
Sbjct: 401 KIVQFLPGLINDQFGNYIIQFLLDIKELDFYLLAELFNRLSNELCQLSCLKFSSNVVEKF 460
Query: 232 LK--YQNAVHYIVEELLNSDQILQVASD 257
+K ++ +IV + Q VASD
Sbjct: 461 IKKLFRIITGFIVNNNGGASQRTAVASD 488
Score = 128 (50.1 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 56/266 (21%), Positives = 118/266 (44%)
Query: 49 SCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFK 108
S + S + I + +D ++ + D+FG ++K ++ ++S + + +K F
Sbjct: 195 SSSTSSSMVEISALPLRDLDYIKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFL 254
Query: 109 FLMMTKPGSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRR 168
L++ G+ ++ K + + + Q + ++ ++ G +L ID + +
Sbjct: 255 DLILDPFGNYLVQKLCDYLTAEQKTLLIQTIYPNVFQISINQYGTRSLQKIIDTVDNEVQ 314
Query: 169 KQIL------HLISVN-AASLSRHRSGNYVVQHVLNLEDP----FLIDAICFALRGHYVD 217
++ S+ +L +GN+V+Q + P F+IDAI + + +
Sbjct: 315 IDLIIKGFSQEFTSIEQVVTLINDLNGNHVIQKCIFKFSPSKFGFIIDAI--VEQNNIIT 372
Query: 218 LSLTKCGSFVVQKFLKYQNAVHYIVEELLNSDQILQ-VASDKYGNYVIQTALVETMRQDR 276
+S K G V+QK L + I + + Q L + +D++GNY+IQ L++ D
Sbjct: 373 ISTHKHGCCVLQKLLSVCT-LQQIFKISVKIVQFLPGLINDQFGNYIIQF-LLDIKELDF 430
Query: 277 LSVHQRLVTKLQQHLAALRVMKYGSN 302
+ + L +L L L +K+ SN
Sbjct: 431 YLLAE-LFNRLSNELCQLSCLKFSSN 455
Score = 45 (20.9 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 257 DKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVMKYGS 301
D +GNY +QT L++ L + + + Q+ ++ + YG+
Sbjct: 515 DNFGNYALQT-LLDVKNYSPLLAYNKNSNAIGQNSSS--TLNYGN 556
>CGD|CAL0000998 [details] [associations]
symbol:PUF3 species:5476 "Candida albicans" [GO:0032473
"external side of mitochondrial outer membrane" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0008298 "intracellular
mRNA localization" evidence=IEA] [GO:0051646 "mitochondrion
localization" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IEA]
[GO:0009060 "aerobic respiration" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0000998 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099 EMBL:AACQ01000198
EMBL:AACQ01000197 RefSeq:XP_711443.1 RefSeq:XP_711460.1
ProteinModelPortal:Q59P09 GeneID:3646939 GeneID:3646950
KEGG:cal:CaO19.1795 KEGG:cal:CaO19.9361 Uniprot:Q59P09
Length = 929
Score = 158 (60.7 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 66/303 (21%), Positives = 132/303 (43%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q+KL + +F + ++ELM+ +G +V K+ E +Q +++
Sbjct: 596 QHGSRFIQQKLPEATEEEKETIFNEIWEISYELMTDVFGNYVIQKYFEYGTTTQKQVLLE 655
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
+ + L S+ +G V++ ++ + L ++ LK + G+ VI
Sbjct: 656 SMI--GHIHEL-SLQMYGCRVVQRALEAIDNEGQL--RIIEELKDHILICCKDQNGNHVI 710
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLY-LACHEQGCINLNNFIDNMKGSRRKQILHLISVNA 179
K +E +L++ +Y L+ H GC + ++ +K IL ++
Sbjct: 711 QKSIEKIKPFSQIRYILTSLDNQIYHLSTHPYGCRVIQRLLEYSDIDDQKLILSQLNNFL 770
Query: 180 ASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQ--NA 237
L + GNYV+QH+L + I + G V S K S V++K +K+ N
Sbjct: 771 YYLILDQYGNYVIQHILENGTQEEKEPILEIVLGSVVQFSKHKFASNVIEKCIKFGDINQ 830
Query: 238 VHYIVEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLS--VHQRLVTKLQQHLAALR 295
I+ E++ ++ + D G V + + + M +D+ V Q+LV L
Sbjct: 831 RKRILHEVMLGNETILGDDDIDGEPVKEDSPLALMVKDQFGNYVIQKLVEAFDGDERKLL 890
Query: 296 VMK 298
++K
Sbjct: 891 IIK 893
>ASPGD|ASPL0000000865 [details] [associations]
symbol:AN6587 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000110 eggNOG:COG5099 OrthoDB:EOG4RR9RJ
RefSeq:XP_664191.1 ProteinModelPortal:Q5AYP3
EnsemblFungi:CADANIAT00007365 GeneID:2870653 KEGG:ani:AN6587.2
HOGENOM:HOG000201252 OMA:SHKSSPQ Uniprot:Q5AYP3
Length = 849
Score = 157 (60.3 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 73/303 (24%), Positives = 140/303 (46%)
Query: 3 GSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKI 62
GS++LQ+K+ + +S D++F + +L +G +V K E N++Q ++ +
Sbjct: 473 GSRFLQQKIETANSDEKDRVFREILPNFLQLAQDIFGNYVAQKLYEHGNQTQKKMMTEDM 532
Query: 63 TFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILK 122
+ ++ L S+ +G V+K ++ V + V ++ + + ++ G+ VI K
Sbjct: 533 --RSKVVKL-SLSPYGCRVVQKALEHVLTDQQA-WLVREIQPQVLE-CVESQHGNHVIQK 587
Query: 123 CLE--PSYNHKNDF-IYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNA 179
E P+ K ++ +E + H GC + ++ + R+ IL I A
Sbjct: 588 VFEYVPTQYTKGLVDSFRGQVER---QSTHSYGCRVIQRMLEFCEDVDRRFILAEIRACA 644
Query: 180 ASLSRHRSGNYVVQHVLNL---ED-PFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQ 235
L + GNYV+QH++ ED F+I+ + L + S K S VV+K +++
Sbjct: 645 PRLIEDQYGNYVIQHIIQSGEEEDRSFMIEMVKQKLLWY----SKHKFASNVVEKSIEFG 700
Query: 236 NAVHY--IVEELL-----NSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQ 288
N I+ L + Q++++ +D+YGNYV Q L +R ++ R + L
Sbjct: 701 NEAQRQDIITRLTAKTEGHETQLIELMADQYGNYVFQKVLGHLSGVERAALVDR-IKPLL 759
Query: 289 QHL 291
HL
Sbjct: 760 VHL 762
>SGD|S000003936 [details] [associations]
symbol:PUF3 "Protein of the mitochondrial outer surface"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=IDA] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0032473
"external side of mitochondrial outer membrane" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IMP] [GO:0051646
"mitochondrion localization" evidence=IMP] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009060 "aerobic respiration"
evidence=IMP] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0016020 "membrane" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SGD:S000003936 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0005741 GO:GO:0003729
EMBL:BK006945 GO:GO:0009060 GO:GO:0007005 GO:GO:0008298
GO:GO:0000288 EMBL:X97560 EMBL:X91488 GO:GO:0051646 eggNOG:COG5099
GO:GO:0032473 OrthoDB:EOG4RR9RJ EMBL:Z73117 EMBL:Z73118 PIR:S64755
RefSeq:NP_013088.1 PDB:3K49 PDB:3K4E PDBsum:3K49 PDBsum:3K4E
ProteinModelPortal:Q07807 SMR:Q07807 DIP:DIP-4449N IntAct:Q07807
MINT:MINT-552454 STRING:Q07807 PaxDb:Q07807 PeptideAtlas:Q07807
EnsemblFungi:YLL013C GeneID:850647 KEGG:sce:YLL013C CYGD:YLL013c
GeneTree:ENSGT00680000100664 OMA:FIPYLIQ EvolutionaryTrace:Q07807
NextBio:966590 Genevestigator:Q07807 GermOnline:YLL013C
Uniprot:Q07807
Length = 879
Score = 156 (60.0 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 59/261 (22%), Positives = 123/261 (47%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q +L++ + + +F + EL + +G +V KF E ++ Q ++
Sbjct: 550 QHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVD 609
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVA--QSPPLLYHVMSALKRLFKFLMMTKPGSS 118
+ F+ + L S+ + ++K ++ + Q L+ + ++ ++ K + G+
Sbjct: 610 Q--FKGNMKQL-SLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIK----DQNGNH 662
Query: 119 VILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVN 178
VI K +E K FI + H +L+ H GC + ++ ++ IL+ +
Sbjct: 663 VIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDF 722
Query: 179 AASLSRHRSGNYVVQHVLNLEDPF----LIDA---ICFALRGHYVDLSLTKCGSFVVQKF 231
L + + GNYV+Q+VL +D F ++D I + + V+ S K S VV+K
Sbjct: 723 IPYLIQDQYGNYVIQYVLQ-QDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVVEKS 781
Query: 232 LKY--QNAVHYIVEELLNSDQ 250
+ Y +N I+ ++L D+
Sbjct: 782 ILYGSKNQKDLIISKILPRDK 802
Score = 139 (54.0 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 52/193 (26%), Positives = 87/193 (45%)
Query: 118 SVILKCLEPSYNHKN---DFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHL 174
S +L+ L S + KN + + H L + G + + S ++ I +
Sbjct: 515 SPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNE 574
Query: 175 ISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKY 234
I +A LS GNYV+Q + + +G+ LSL V+QK L+Y
Sbjct: 575 IRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEY 634
Query: 235 QNAVHYIVEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAAL 294
++ I L SD +LQ+ D+ GN+VIQ A +ET+ ++L +++ L H+ L
Sbjct: 635 IDSNQRIELVLELSDSVLQMIKDQNGNHVIQKA-IETIPIEKLPF---ILSSLTGHIYHL 690
Query: 295 RVMKYGSNKEIQK 307
YG + IQ+
Sbjct: 691 STHSYGC-RVIQR 702
Score = 132 (51.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 45/192 (23%), Positives = 89/192 (46%)
Query: 116 GSSVILKCLE-PSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHL 174
G+ VI K E S KN + Q + L+ C + ++ + ++R +++
Sbjct: 588 GNYVIQKFFEFGSKIQKNTLVDQFK-GNMKQLSLQMYACRVIQKALEYIDSNQRIELVLE 646
Query: 175 ISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKY 234
+S + + + ++GN+V+Q + + I +L GH LS G V+Q+ L++
Sbjct: 647 LSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEF 706
Query: 235 QNAVHYIVEELLNS--DQILQVASDKYGNYVIQTALVETM--RQDRLSVHQRLVTKLQQH 290
++ E +LN D I + D+YGNYVIQ L + ++ + + Q ++ + +
Sbjct: 707 GSSEDQ--ESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANN 764
Query: 291 LAALRVMKYGSN 302
+ K+ SN
Sbjct: 765 VVEYSKHKFASN 776
>POMBASE|SPAC4G9.05 [details] [associations]
symbol:mpf1 "meiotic PUF family protein 1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0007126
"meiosis" evidence=IEP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
PomBase:SPAC4G9.05 GO:GO:0007126 GO:GO:0005737 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0003729 eggNOG:COG5099
OrthoDB:EOG4QNR4B EMBL:AB248102 PIR:T38864 RefSeq:NP_593687.1
ProteinModelPortal:Q10238 EnsemblFungi:SPAC4G9.05.1 GeneID:2543134
KEGG:spo:SPAC4G9.05 NextBio:20804161 Uniprot:Q10238
Length = 581
Score = 153 (58.9 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 72/313 (23%), Positives = 130/313 (41%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ S LQ++L + D L + F+ LM ++G F+ K E E+QL
Sbjct: 267 QAASLSLQQQLKNEDIEDNINLINTILPFSVTLMKNKFGNFLIQKCFEYSTEAQLQSFSY 326
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
F + S+D FGS ++K +++ + +++ L +M + V
Sbjct: 327 ---FLKKHVKELSIDAFGSHVLQKSLEIYPER--FTNNLIEELIECLPATLMQRHSCHVW 381
Query: 121 LKCLEPSYNHKNDFIYQAALEHC----LYLACHEQGCINLNNFIDNMKGSRRKQILHLIS 176
K E D I+ + L ++ E G + + +N K ++ L I
Sbjct: 382 QKFFETRRKSLVDGIFDHFNKKMQGKWLQVSVSEMGSLVVQTIFENCKEKDKRTCLDEII 441
Query: 177 VNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQN 236
N + + GN+V+QH++ I +L S + S VV++ L+ +
Sbjct: 442 NNMDQIICGQWGNWVIQHIIEHGSEPDKQRILNSLLKEVESYSTNRYASKVVERALRVCH 501
Query: 237 AVHY--IVEELLNSDQIL------QVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKL 287
+ V+E+ L ++AS++YGNY++Q L V T Q L + L
Sbjct: 502 VTFFDRYVKEITTPQNELPTIFLQEIASNQYGNYIVQYLLQVATPSQINL-----MAEHL 556
Query: 288 QQHLAALRVMKYG 300
++H+ +LR KYG
Sbjct: 557 KKHMVSLRGHKYG 569
>ZFIN|ZDB-GENE-081031-76 [details] [associations]
symbol:pum2 "pumilio homolog 2 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 ZFIN:ZDB-GENE-081031-76
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01062788 EMBL:CABZ01062789
EMBL:CABZ01062790 EMBL:CU468963 IPI:IPI00864826
Ensembl:ENSDART00000086578 Bgee:F1R4Q6 Uniprot:F1R4Q6
Length = 1206
Score = 142 (55.0 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 64/302 (21%), Positives = 131/302 (43%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q+KL S +F + ++LM+ +G +V KF E + Q +
Sbjct: 854 QHGSRFIQQKLERATSAERQMVFGEILQAAYQLMTDVFGNYVIQKFFEFGSADQKLALAT 913
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
+I + + LA + +G ++K ++ ++ ++ ++ L + + G+ V+
Sbjct: 914 RI--RGHVLPLA-LQMYGCRVIQKALESISSDQQVISDIVRELDGHVLKCVKDQNGNHVV 970
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
KC+E FI A L+ H GC + +++ + IL + ++
Sbjct: 971 QKCIECVQPQALQFIIDAFQGQVFVLSTHPYGCRVIQRILEHCTQEQTLPILEELHQHSE 1030
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAIC-FALRGHYVDLSLTKCGSFVVQKFLKYQNAVH 239
L + N VQ L+ F IC F L L + G++V+Q L++
Sbjct: 1031 QLGQK---NTSVQ----LKVTFKGLRICSFDL------LFKDQYGNYVIQHVLEHGRPED 1077
Query: 240 Y--IVEELLNSDQILQVASDKYGNYVIQTALVETMRQDR-LSVHQRLVTKLQQHLAALRV 296
IV E+ ++L ++ K+ + V++ ++ + R +R L + + K H A +
Sbjct: 1078 KSKIVAEVRG--KVLALSQHKFASNVVEKCVIHSSRAERALLIDEVCCQKDGPHSALYTM 1135
Query: 297 MK 298
MK
Sbjct: 1136 MK 1137
Score = 142 (55.0 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 78/311 (25%), Positives = 133/311 (42%)
Query: 3 GSQYLQE--KLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
G+ +Q+ + S D ++ L + G L YG V K +ES + Q + +
Sbjct: 892 GNYVIQKFFEFGSADQKLA--LATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISDI 949
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKP-GSSV 119
+ D L D+ G+ V+K I+ V P L ++ A + F++ T P G V
Sbjct: 950 -VRELDGHVLKCVKDQNGNHVVQKCIECV--QPQALQFIIDAFQGQV-FVLSTHPYGCRV 1005
Query: 120 ILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNA 179
I + LE + I + +H L + + L KG L + S +
Sbjct: 1006 IQRILEHCTQEQTLPILEELHQHSEQLG-QKNTSVQLKV---TFKG------LRICSFDL 1055
Query: 180 ASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH 239
L + + GNYV+QHVL P I +RG + LS K S VV+K + + +
Sbjct: 1056 --LFKDQYGNYVIQHVLEHGRPEDKSKIVAEVRGKVLALSQHKFASNVVEKCVIHSSRAE 1113
Query: 240 --YIVEELL-NSD----QILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQHL 291
+++E+ D + + D+Y NYV+Q + + Q ++ +H K++ H+
Sbjct: 1114 RALLIDEVCCQKDGPHSALYTMMKDQYANYVVQRMIDMAEPAQRKIIMH-----KIRPHI 1168
Query: 292 AALRVMKYGSN 302
A LR YG +
Sbjct: 1169 ATLRKYTYGKH 1179
>TAIR|locus:2035312 [details] [associations]
symbol:PUM22 "pumilio 22" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005737 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 EMBL:AC023628 IPI:IPI00518100
PIR:F86144 RefSeq:NP_171648.1 UniGene:At.51446
ProteinModelPortal:Q9LNI2 EnsemblPlants:AT1G01410.1 GeneID:837547
KEGG:ath:AT1G01410 TAIR:At1g01410 eggNOG:NOG237520
HOGENOM:HOG000153055 InParanoid:Q9LNI2 OMA:MTHERGY PhylomeDB:Q9LNI2
ProtClustDB:CLSN2912781 Genevestigator:Q9LNI2 Uniprot:Q9LNI2
Length = 361
Score = 134 (52.2 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 40/132 (30%), Positives = 70/132 (53%)
Query: 170 QILHLISVNAASLSRHRS-GNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVV 228
QIL LI V+A L++ GN QH +NL I L+ HY++LS K GS +V
Sbjct: 203 QILRLIGVHALYLTKDPDMGNKTFQHAINLHHQDCTTFIACGLQSHYIELSFLKHGSKIV 262
Query: 229 QKFLKYQNAVHYIV---EELLNSDQ--ILQVASDKYGNYVIQTALVETMRQDRLSVHQRL 283
+ + + ++ +V E++ D+ ++++A+D+YGN +++ L ++ + L
Sbjct: 263 EMLIDDRISMVPLVLLMMEIVKCDEDTLVRLATDEYGNNILKKFLA-LAKEHKEDFFGDL 321
Query: 284 VTKLQQHLAALR 295
V KL L +LR
Sbjct: 322 VDKLNPLLDSLR 333
>GENEDB_PFALCIPARUM|PFD0825c [details] [associations]
symbol:PFD0825c "RNA-binding protein of
pumilio/mpt5 family, putative" species:5833 "Plasmodium falciparum"
[GO:0017148 "negative regulation of translation" evidence=ISS]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0003723 EMBL:AL844503
HOGENOM:HOG000225260 RefSeq:XP_001351478.1
ProteinModelPortal:Q8I1R7 EnsemblProtists:PFD0825c:mRNA
GeneID:812518 KEGG:pfa:PFD0825c EuPathDB:PlasmoDB:PF3D7_0417100
OMA:IDHINDI ProtClustDB:CLSZ2500510 Uniprot:Q8I1R7
Length = 514
Score = 128 (50.1 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 63/300 (21%), Positives = 123/300 (41%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ G +Y+ +KL + + + + T L YG +V + +E
Sbjct: 206 KNGCEYIIKKLKEDNKEEKEIILNSLLIDTMSLCPDIYGSYVAQSIFDLKDEKY------ 259
Query: 61 KITFQDQLFLLAS---VDKFGSSSVKKLIKVVAQSPPLLYHVMSALKR-LFKFLMMTKPG 116
K F D+ S + +G ++K ++ + S + L+ L K++ G
Sbjct: 260 KERFTDEFLKHTSFLTLHTYGCRLIQKSLESL--SDEYKCKIFKELQEDLIKYICHQN-G 316
Query: 117 SSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLIS 176
+ VI KC+E D I E+ +L+ H GC + I + ++ L+
Sbjct: 317 NHVIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGC-RIVQRIYEIGNEQQINRLNEQI 375
Query: 177 VNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFL---- 232
+ L ++R GNYV+Q D + I + LS K +++K L
Sbjct: 376 IKKIHLIKNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEKILLKKE 435
Query: 233 -KYQNAV-HYIVEELLNS-DQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQ 289
KY+ + IV ++ + D I+ + D YGN+++Q L +++R + + ++ L +
Sbjct: 436 YKYKKKIIKKIVNDISDGKDNIINICKDCYGNFMMQKLLTTCRKKERNFIIKTIIENLDK 495
Score = 123 (48.4 bits), Expect = 0.00010, P = 0.00010
Identities = 40/176 (22%), Positives = 79/176 (44%)
Query: 140 LEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASLSRHRSGNYVVQHVLNLE 199
L+H +L H GC + ++++ + +I + + H++GN+V+Q + +
Sbjct: 268 LKHTSFLTLHTYGCRLIQKSLESLSDEYKCKIFKELQEDLIKYICHQNGNHVIQKCVEVL 327
Query: 200 DPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNA--VHYIVEELLNSDQILQVASD 257
ID I + + LS G +VQ+ + N ++ + E+++ +++ +
Sbjct: 328 PCSYIDIIINIIEEYLPFLSSHAYGCRIVQRIYEIGNEQQINRLNEQIIKKIHLIK---N 384
Query: 258 KYGNYVIQTALVETMRQDRLSVHQRLVT---KLQQHLAALRVM-KYGSNKEIQKKK 309
+YGNYVIQ + R + +V KL H A ++ K KE + KK
Sbjct: 385 RYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEKILLKKEYKYKK 440
>UNIPROTKB|Q8I1R7 [details] [associations]
symbol:PFD0825c "RNA-binding protein of pumilio/mpt5
family, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0017148 "negative regulation of translation" evidence=ISS]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0003723 EMBL:AL844503
HOGENOM:HOG000225260 RefSeq:XP_001351478.1
ProteinModelPortal:Q8I1R7 EnsemblProtists:PFD0825c:mRNA
GeneID:812518 KEGG:pfa:PFD0825c EuPathDB:PlasmoDB:PF3D7_0417100
OMA:IDHINDI ProtClustDB:CLSZ2500510 Uniprot:Q8I1R7
Length = 514
Score = 128 (50.1 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 63/300 (21%), Positives = 123/300 (41%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ G +Y+ +KL + + + + T L YG +V + +E
Sbjct: 206 KNGCEYIIKKLKEDNKEEKEIILNSLLIDTMSLCPDIYGSYVAQSIFDLKDEKY------ 259
Query: 61 KITFQDQLFLLAS---VDKFGSSSVKKLIKVVAQSPPLLYHVMSALKR-LFKFLMMTKPG 116
K F D+ S + +G ++K ++ + S + L+ L K++ G
Sbjct: 260 KERFTDEFLKHTSFLTLHTYGCRLIQKSLESL--SDEYKCKIFKELQEDLIKYICHQN-G 316
Query: 117 SSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLIS 176
+ VI KC+E D I E+ +L+ H GC + I + ++ L+
Sbjct: 317 NHVIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGC-RIVQRIYEIGNEQQINRLNEQI 375
Query: 177 VNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFL---- 232
+ L ++R GNYV+Q D + I + LS K +++K L
Sbjct: 376 IKKIHLIKNRYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEKILLKKE 435
Query: 233 -KYQNAV-HYIVEELLNS-DQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQ 289
KY+ + IV ++ + D I+ + D YGN+++Q L +++R + + ++ L +
Sbjct: 436 YKYKKKIIKKIVNDISDGKDNIINICKDCYGNFMMQKLLTTCRKKERNFIIKTIIENLDK 495
Score = 123 (48.4 bits), Expect = 0.00010, P = 0.00010
Identities = 40/176 (22%), Positives = 79/176 (44%)
Query: 140 LEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASLSRHRSGNYVVQHVLNLE 199
L+H +L H GC + ++++ + +I + + H++GN+V+Q + +
Sbjct: 268 LKHTSFLTLHTYGCRLIQKSLESLSDEYKCKIFKELQEDLIKYICHQNGNHVIQKCVEVL 327
Query: 200 DPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNA--VHYIVEELLNSDQILQVASD 257
ID I + + LS G +VQ+ + N ++ + E+++ +++ +
Sbjct: 328 PCSYIDIIINIIEEYLPFLSSHAYGCRIVQRIYEIGNEQQINRLNEQIIKKIHLIK---N 384
Query: 258 KYGNYVIQTALVETMRQDRLSVHQRLVT---KLQQHLAALRVM-KYGSNKEIQKKK 309
+YGNYVIQ + R + +V KL H A ++ K KE + KK
Sbjct: 385 RYGNYVIQKCFEHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEKILLKKEYKYKK 440
>WB|WBGene00022257 [details] [associations]
symbol:puf-11 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009792 GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0000003 GO:GO:0003723 EMBL:FO081731
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
RefSeq:NP_741425.1 ProteinModelPortal:Q8IU00 SMR:Q8IU00
IntAct:Q8IU00 STRING:Q8IU00 PaxDb:Q8IU00 EnsemblMetazoa:Y73B6BL.38
GeneID:177406 KEGG:cel:CELE_Y73B6BL.38 UCSC:Y73B6BL.38 CTD:177406
WormBase:Y73B6BL.38 InParanoid:Q8IU00 OMA:HVVKCGG NextBio:896676
Uniprot:Q8IU00
Length = 505
Score = 124 (48.7 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 45/153 (29%), Positives = 77/153 (50%)
Query: 153 CINL--NNFIDNM---KGSRRKQIL--HLISVNAASLSRHRSGNYVVQHVLNLEDPFLID 205
C N+ N F+ + + ++IL HL S + +L +S V+Q + D L
Sbjct: 193 CCNMFGNFFVQRVLECSNTEEQEILTEHLAS-DLYNLCLDKSACRVIQLAIQKLDVHLAT 251
Query: 206 AICFALRGHY-VDLSLTKCGSFVVQKFLKYQ--NAVHYIVEELLNSDQILQVASDKYGNY 262
+ LR Y V LS+ + G+ V+QK +K +A ++VE + D ++ V DKYG
Sbjct: 252 RLSLELRDTYLVRLSIDQNGNHVIQKIVKTLPVSAWSFVVEFFADDDNLIHVCQDKYGCR 311
Query: 263 VIQTALVETMRQDRLS-VHQRLVTKLQQHLAAL 294
VIQ+ VET+ D + +Q+ V L+ ++ +
Sbjct: 312 VIQST-VETLSSDTYAECYQQRVVLLRSLMSGV 343
>WB|WBGene00004239 [details] [associations]
symbol:puf-3 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0035046 "pronuclear
migration" evidence=IMP] [GO:0009992 "cellular water homeostasis"
evidence=IMP] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0035046
GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000910 GO:GO:0003730 GO:GO:0009992 EMBL:AL021488
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
HSSP:Q14671 RefSeq:NP_502606.1 ProteinModelPortal:Q9U2G4 SMR:Q9U2G4
IntAct:Q9U2G4 MINT:MINT-251162 STRING:Q9U2G4 PaxDb:Q9U2G4
EnsemblMetazoa:Y45F10A.2.1 EnsemblMetazoa:Y45F10A.2.2 GeneID:178320
KEGG:cel:CELE_Y45F10A.2 UCSC:Y45F10A.2.1 CTD:178320
WormBase:Y45F10A.2 InParanoid:Q9U2G4 OMA:HNEPANA NextBio:900640
Uniprot:Q9U2G4
Length = 502
Score = 117 (46.2 bits), Expect = 0.00046, P = 0.00045
Identities = 43/153 (28%), Positives = 77/153 (50%)
Query: 153 CINL--NNFIDNM---KGSRRKQIL--HLISVNAASLSRHRSGNYVVQHVLNLEDPFLID 205
C N+ N F+ + + ++IL HL + + +L +S V+Q + D L
Sbjct: 190 CSNMFGNFFVQRVLECSNTEEQEILTEHL-ATDLYNLCLDKSACRVIQLAIQKLDVHLAT 248
Query: 206 AICFALRG-HYVDLSLTKCGSFVVQKFLKYQ--NAVHYIVEELLNSDQILQVASDKYGNY 262
+ LR H V LS+ + G+ V+QK +K ++ ++V+ + D ++ V DKYG
Sbjct: 249 RLSLELRDTHLVRLSIDQNGNHVIQKIVKTLPVSSWTFLVDFFADDDNLIHVCQDKYGCR 308
Query: 263 VIQTALVETMRQDRLS-VHQRLVTKLQQHLAAL 294
VIQ+ VET+ D+ + +Q V L+ +A +
Sbjct: 309 VIQST-VETLSTDQYAQCYQHRVILLRSLMAGV 340
>UNIPROTKB|Q9U2G4 [details] [associations]
symbol:puf-3 "Protein PUF-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0035046
GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000910 GO:GO:0003730 GO:GO:0009992 EMBL:AL021488
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
HSSP:Q14671 RefSeq:NP_502606.1 ProteinModelPortal:Q9U2G4 SMR:Q9U2G4
IntAct:Q9U2G4 MINT:MINT-251162 STRING:Q9U2G4 PaxDb:Q9U2G4
EnsemblMetazoa:Y45F10A.2.1 EnsemblMetazoa:Y45F10A.2.2 GeneID:178320
KEGG:cel:CELE_Y45F10A.2 UCSC:Y45F10A.2.1 CTD:178320
WormBase:Y45F10A.2 InParanoid:Q9U2G4 OMA:HNEPANA NextBio:900640
Uniprot:Q9U2G4
Length = 502
Score = 117 (46.2 bits), Expect = 0.00046, P = 0.00045
Identities = 43/153 (28%), Positives = 77/153 (50%)
Query: 153 CINL--NNFIDNM---KGSRRKQIL--HLISVNAASLSRHRSGNYVVQHVLNLEDPFLID 205
C N+ N F+ + + ++IL HL + + +L +S V+Q + D L
Sbjct: 190 CSNMFGNFFVQRVLECSNTEEQEILTEHL-ATDLYNLCLDKSACRVIQLAIQKLDVHLAT 248
Query: 206 AICFALRG-HYVDLSLTKCGSFVVQKFLKYQ--NAVHYIVEELLNSDQILQVASDKYGNY 262
+ LR H V LS+ + G+ V+QK +K ++ ++V+ + D ++ V DKYG
Sbjct: 249 RLSLELRDTHLVRLSIDQNGNHVIQKIVKTLPVSSWTFLVDFFADDDNLIHVCQDKYGCR 308
Query: 263 VIQTALVETMRQDRLS-VHQRLVTKLQQHLAAL 294
VIQ+ VET+ D+ + +Q V L+ +A +
Sbjct: 309 VIQST-VETLSTDQYAQCYQHRVILLRSLMAGV 340
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.137 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 309 309 0.00079 116 3 11 22 0.47 33
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 71
No. of states in DFA: 597 (63 KB)
Total size of DFA: 200 KB (2113 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.78u 0.14s 25.92t Elapsed: 00:00:02
Total cpu time: 25.79u 0.14s 25.93t Elapsed: 00:00:02
Start: Fri May 10 17:38:30 2013 End: Fri May 10 17:38:32 2013