BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048245
(309 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LVC3|PUM12_ARATH Pumilio homolog 12 OS=Arabidopsis thaliana GN=APUM12 PE=2 SV=2
Length = 596
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 164/302 (54%), Gaps = 7/302 (2%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ G ++LQ S D ++ +F + + ELM +G ++ K +E CNE Q I+
Sbjct: 289 QHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPFGNYLVQKLLEVCNEDQRMQIVH 348
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
IT + L + S D G+ +V+K+++ + + ++SALK L+ G+ V+
Sbjct: 349 SITRKPGLLIKISCDMHGTRAVQKIVETAKREEEISI-IISALKHGIVHLIKNVNGNHVV 407
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
+CL+ + F+++AA+ HC+ LA GC L + +G +++ ++ I+ NA
Sbjct: 408 QRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQKCLGYSEGEQKQHLVSEIASNAL 467
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH- 239
LS+ GNYV+Q+V L+ + I L G+Y +LS+ KC S VV+K LK + H
Sbjct: 468 LLSQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHR 527
Query: 240 -YIVEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVMK 298
I+ EL+N ++ QV D YGNYVIQ AL +Q + +VH LV ++ ++++LR
Sbjct: 528 ARIIRELINYGRLDQVMLDPYGNYVIQAAL----KQSKGNVHALLVDAIKLNISSLRTNP 583
Query: 299 YG 300
YG
Sbjct: 584 YG 585
>sp|Q9LM20|PUM8_ARATH Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana
GN=APUM8 PE=3 SV=2
Length = 515
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 156/300 (52%), Gaps = 7/300 (2%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ G ++LQ G + +F V ELM +G ++ K ++ CNE Q IIL
Sbjct: 210 QHGCRFLQWIFEDGSALDALVIFSEVIPHVVELMMDPFGNYLMQKLLDVCNEEQRTQIIL 269
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
+T + + S++ +G+ V++L++ + ++ + V SAL+ F L+ G+ VI
Sbjct: 270 MVTSEPGQLIRISLNAYGTRVVQRLVESI-KTRKQISLVKSALRPGFLNLIRDLNGNHVI 328
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
+CL+ N+FI++ A + C+ +A H GC L I G +R++++ IS N+
Sbjct: 329 QRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQKCIAYSSGLQREKLVTEISRNSL 388
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKY-QNAVH 239
L++ GNY VQ VL L D I A+ L+GHYV+LS+ K S +V++ L + +
Sbjct: 389 FLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYVELSMQKFSSHMVERCLTHCPESRP 448
Query: 240 YIVEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVMKY 299
IV EL++ + D Y N+VIQ AL T + S+H LV ++ H + LR Y
Sbjct: 449 QIVRELISVPHFDILIQDPYANFVIQAALAVT----KGSLHATLVEVIRPH-SILRNNPY 503
>sp|Q9C9R6|PUM7_ARATH Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana
GN=APUM7 PE=3 SV=2
Length = 650
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 148/300 (49%), Gaps = 7/300 (2%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ G ++LQ G S +F V ELM +G ++ K ++ C E Q I+L
Sbjct: 345 QHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLMQKLLDVCTEEQRTQIVL 404
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
T + + S++ +G+ V++L++ + +S + V AL+ F L+ G+ VI
Sbjct: 405 VATEEPGQLIRISLNAYGTRVVQRLVETI-RSGKQISLVKLALRPGFLDLIKDLNGNHVI 463
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
+CL+ N FI+ AA + C +A H GC L I +R++++ IS N+
Sbjct: 464 QRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQREKLIAEISRNSL 523
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKY-QNAVH 239
L++ GNY VQ V+ L P + + L+GHYV LS+ K S +V++ L + +
Sbjct: 524 LLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVERCLMHCPESRP 583
Query: 240 YIVEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVMKY 299
IV EL++ Q+ D Y N+VIQ AL T + +H LV ++ H + LR Y
Sbjct: 584 QIVRELVSVPHFDQLLQDPYANFVIQAALAAT----KGPLHASLVEVIRPH-SILRNNPY 638
>sp|Q9LDW3|PUM11_ARATH Pumilio homolog 11 OS=Arabidopsis thaliana GN=APUM11 PE=3 SV=2
Length = 556
Score = 118 bits (295), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 141/270 (52%), Gaps = 4/270 (1%)
Query: 3 GSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKI 62
G + LQ+ + G+ + +F V EL + +G ++ K IE CNE Q I++++
Sbjct: 255 GCRLLQKFVDEGNFVDVMIIFKEVINNVIELGTDPFGNYLIQKLIEVCNEEQRTQILIRL 314
Query: 63 TFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILK 122
T + L + S++ +G+ V+KLI+ V + V SAL F L G+ VIL
Sbjct: 315 TSKPGLLVKISINNYGTRVVQKLIETVTTKEQISL-VKSALVPGFLSLFRELNGNHVILN 373
Query: 123 CLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASL 182
CL+ + N FI +AA + C+ +A GC L + G + ++++ IS N+ L
Sbjct: 374 CLKFFSPNDNKFILEAATKFCIEIATTRHGCCVLQRCVSYSVGEQHEKLVDEISRNSLLL 433
Query: 183 SRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLK-YQNAVHYI 241
++ GNY+VQ++ +E + F LRG+YV L+ K GS VV+K L+ Y + I
Sbjct: 434 AQDPFGNYLVQYI--IEKKVGGVNVLFELRGNYVKLATQKFGSHVVEKCLRYYPESRSQI 491
Query: 242 VEELLNSDQILQVASDKYGNYVIQTALVET 271
V EL++ + D Y NYVIQ AL +T
Sbjct: 492 VNELVSVLNFGYLLQDPYANYVIQCALSKT 521
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 224 GSFVVQKFLKYQNAVHYIV--EELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQ 281
G ++QKF+ N V ++ +E++N+ ++++ +D +GNY+IQ + + R +
Sbjct: 255 GCRLLQKFVDEGNFVDVMIIFKEVINN--VIELGTDPFGNYLIQKLIEVCNEEQRTQILI 312
Query: 282 RLVTKLQQHLAALRVMKYGSNKEIQK 307
RL +K L + + YG+ + +QK
Sbjct: 313 RLTSK-PGLLVKISINNYGT-RVVQK 336
>sp|Q9LXC5|PUM21_ARATH Putative pumilio homolog 21 OS=Arabidopsis thaliana GN=APUM21 PE=3
SV=1
Length = 517
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 135/248 (54%), Gaps = 4/248 (1%)
Query: 52 ESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLM 111
ES L I +T ++FL + +++GS +++ L + +SP L + + A+ F LM
Sbjct: 246 ESHLFKIGSALTTTKRIFLHLATNQYGSQALRILFR---RSPSLDHLLFCAVDTNFFLLM 302
Query: 112 MTKPGSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQI 171
K G +I+ + K + +Y+ E+ L+LA E GC+ LNN + ++G R I
Sbjct: 303 SDKYGRGLIIPAIRAVDKTKKESLYKLTYEYTLHLARLETGCLALNNVLQEIRGIYRDLI 362
Query: 172 LHLISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKF 231
++ NA LS G +VVQ++L L++P AI LRG + L++ + GS+VV+K
Sbjct: 363 FECVANNADWLSFDPYGTHVVQNILILQNPVATTAIAERLRGSFFRLAMERQGSYVVEKC 422
Query: 232 LKYQNAVHYIVEELL-NSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQH 290
LK A ++EE N+ + +++ +DK+GN+V+Q+AL ++ + + V KL+ H
Sbjct: 423 LKSDFARDQVLEEFRGNAKEWVRMTTDKFGNFVVQSALRVMKEKEMRPLLREFVEKLRPH 482
Query: 291 LAALRVMK 298
+ + +
Sbjct: 483 FGKMEIGR 490
>sp|Q1PFN9|PUM9_ARATH Pumilio homolog 9 OS=Arabidopsis thaliana GN=APUM9 PE=2 SV=1
Length = 564
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 143/288 (49%), Gaps = 12/288 (4%)
Query: 3 GSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKI 62
G + LQ+ + G + + EL +G ++ K + +E Q LI+ +
Sbjct: 263 GCRVLQKLVEEGTFHEAKVILLAIIDHVVELSMDPFGNYIVQKLFDVSDEEQRTLIVSVL 322
Query: 63 TFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILK 122
T + + ++ +G+ V+K+I+ V ++ + V S LK F L+ G+ VI
Sbjct: 323 TSNPRELIRICLNTYGTRVVQKMIETV-KTKQQIALVKSGLKPGFLALVKDLNGNHVIQS 381
Query: 123 CLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASL 182
CL+ + N+F+ +AA ++C +A H GC L I N G +R++++ IS N+ L
Sbjct: 382 CLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQCCISNSVGLQRERLVAEISRNSLHL 441
Query: 183 SRHRSGNYVVQHVLNLEDPFLIDAI--CFALRGHYVDLSLTKCGSFVVQKFL-KYQNAVH 239
S+ GNYVVQ++++ + + A+ R HY +L+ K S V++K L KY +
Sbjct: 442 SQDPFGNYVVQYLIDQQ----VSAVKLLVQFRMHYAELATQKFSSHVIEKCLRKYPESRA 497
Query: 240 YIVEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKL 287
IV ELL + D Y NYVIQTAL T + V +LV K+
Sbjct: 498 EIVRELLCVPNFEYLLQDPYANYVIQTALSVT----KGPVRAKLVAKV 541
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 11/152 (7%)
Query: 124 LEPSYNHKNDFIYQAALEHCLYLACHEQ-GCINLNNFIDNMKGSRRKQILHLISVNAASL 182
+ P N ND + + + L +Q GC L ++ K IL I + L
Sbjct: 236 MSPKSN--NDLVSMVEIYGSVNLMAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVEL 293
Query: 183 SRHRSGNYVVQHVLNLEDP---FLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH 239
S GNY+VQ + ++ D LI ++ + + + L G+ VVQK ++
Sbjct: 294 SMDPFGNYIVQKLFDVSDEEQRTLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKTKQ 353
Query: 240 YIVEELLNS---DQILQVASDKYGNYVIQTAL 268
I L+ S L + D GN+VIQ+ L
Sbjct: 354 QIA--LVKSGLKPGFLALVKDLNGNHVIQSCL 383
>sp|Q9LVG3|PUM18_ARATH Pumilio homolog 18 OS=Arabidopsis thaliana GN=APUM18 PE=2 SV=1
Length = 327
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 144/275 (52%), Gaps = 8/275 (2%)
Query: 31 FELMSGQYGRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVA 90
F LM+ G F + I + ++++L + +T F+ KFGS V+KL+
Sbjct: 46 FNLMTDGDGVSYFKEMISNSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLL---G 102
Query: 91 QSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHE 150
+S + +A+ R F + K S V ++ + +Y+ L H L LAC +
Sbjct: 103 KSDDVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQ 162
Query: 151 QGCINLNNFIDNMKGSR-RKQILHLISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICF 209
GCI LN+ I + R Q+L L++ NA LS SGN+VVQHVL L D I I
Sbjct: 163 HGCIALNDIITDADDPYYRDQLLELVASNALRLSNDASGNFVVQHVLTLYDSRCIHNIAV 222
Query: 210 ALRGHYVDLSLTKCGSFVVQKFLKYQNAVHYIVEELL--NSDQILQVASDKYGNYVIQTA 267
L G ++LS K GS++V+K L+ + ++ +V ELL + D+++++A +++GN+V+ A
Sbjct: 223 NLYGQCIELSFKKYGSYIVEKLLEVEESMVVVVVELLGCDGDRLMRLARNEFGNFVVVKA 282
Query: 268 LVETMRQDRLSVHQRLVTKLQQHLAALRVMKYGSN 302
L T + R+ + LV KL + LR +GSN
Sbjct: 283 LRFT-KMSRMDLFWGLVQKLMPFIRLLR-RSHGSN 315
>sp|Q9LP21|PUM10_ARATH Putative pumilio homolog 10 OS=Arabidopsis thaliana GN=APUM10 PE=3
SV=2
Length = 528
Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 149/291 (51%), Gaps = 14/291 (4%)
Query: 3 GSQYLQEKLSSG---DSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALII 59
G + LQ+ + G DS+++ F + EL G ++ K + +E Q +I+
Sbjct: 227 GCRALQKLVEEGTVLDSKVI---FLEIIDHVVELSMDPLGNYIVQKLLVVSDEEQRTMIV 283
Query: 60 LKITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSV 119
+T + + + ++ G+ ++K+IK V ++ + V SAL+ F L+ G V
Sbjct: 284 SVLTSKPRELIKICLNTNGTRVIQKMIKTV-KTKQQIALVKSALEPGFLVLVNDSNGYHV 342
Query: 120 ILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNA 179
+ CLE + N F+ +AA E+C LA H+ GC L + N G + ++++ IS ++
Sbjct: 343 LQSCLEFLVPNDNKFVVEAATEYCAQLATHQYGCYVLQCSLINTVGLQHERLVAEISRDS 402
Query: 180 ASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFL-KYQNAV 238
LS+ GNYVVQ +++ + + + R H ++L+ K S V++K L KY +
Sbjct: 403 LRLSQDPFGNYVVQCLIDQQVSSV--NLLLPFRTHCIELATQKFSSHVIEKCLRKYPESR 460
Query: 239 HYIVEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQ 289
IV ELL+ Q+ D Y NYVIQTAL T + +V RLV K+++
Sbjct: 461 AEIVRELLSYPNFEQLLQDPYANYVIQTALSVT----KGAVRARLVEKVKR 507
>sp|Q9LSS8|PUM19_ARATH Putative pumilio homolog 19 OS=Arabidopsis thaliana GN=APUM19 PE=3
SV=2
Length = 327
Score = 104 bits (259), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 143/275 (52%), Gaps = 8/275 (2%)
Query: 31 FELMSGQYGRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVA 90
F LM+ G F + I ++++L + +T F+ KFGS V+KL+
Sbjct: 46 FNLMTDGDGVSYFKEMISKSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLL---G 102
Query: 91 QSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHE 150
+S + +A+ R F + K S V ++ + +Y+ L H L LAC +
Sbjct: 103 KSDDVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQ 162
Query: 151 QGCINLNNFIDNMKGSR-RKQILHLISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICF 209
GCI LN+ I + R Q+L L+ NA LS SGN+VVQHVL L D I I
Sbjct: 163 HGCIALNDIITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYDSRCIHNIAV 222
Query: 210 ALRGHYVDLSLTKCGSFVVQKFLKYQNAVHYIVEELL--NSDQILQVASDKYGNYVIQTA 267
L G ++LS K GS++V+K L+ + ++ +V ELL + D+++++A +++GN+V+ A
Sbjct: 223 NLYGQCIELSFKKYGSYIVEKLLEVEESMVVVVVELLGCDGDRLMRLARNEFGNFVVVKA 282
Query: 268 LVETMRQDRLSVHQRLVTKLQQHLAALRVMKYGSN 302
L T ++ R+ + LV KL + LR +G+N
Sbjct: 283 LRFT-KEMRMDLFWGLVQKLMPFIHLLR-RSHGNN 315
>sp|Q9FIE9|PUM16_ARATH Putative pumilio homolog 16 OS=Arabidopsis thaliana GN=APUM16 PE=3
SV=2
Length = 332
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 110/204 (53%), Gaps = 7/204 (3%)
Query: 69 FLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEPSY 128
F++ + +K GS +++KL+ S + A+ RLF +M K S V ++ +
Sbjct: 87 FMVITTNKNGSKTLQKLM---GMSDDMDVFFFEAIMRLFIHVMTDKYASYVTIQGMRVFQ 143
Query: 129 NHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSR-RKQILHLISVNAASLSRHRS 187
K + +Y L + +LA + GCI LN I ++ R Q+L +++ NA LS
Sbjct: 144 QDKRELMYDQILRYACFLAGDQYGCIALNEIITDLDDPYYRDQLLDIVANNALLLSNDAY 203
Query: 188 GNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQN-AVHYIVEELL 246
GN+VVQHVL L D I L G+ V+LS K GS++V++ L+ + + +V +LL
Sbjct: 204 GNFVVQHVLKLRDSRCTRNIADKLCGYCVELSFKKYGSYIVERLLEAGDVPMATVVLDLL 263
Query: 247 --NSDQILQVASDKYGNYVIQTAL 268
++ ++++A +YGN+V+ AL
Sbjct: 264 ACKTEMLIRLARSEYGNFVVCKAL 287
>sp|Q92359|YDHE_SCHPO Pumilio domain-containing protein C6G9.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC6G9.14 PE=4 SV=1
Length = 681
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 146/304 (48%), Gaps = 14/304 (4%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ G +YLQ L + +D +F + LM +G ++ K E +E+Q + I
Sbjct: 355 QHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAFGNYLCQKLFEHASEAQRSTFIQ 414
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
I + + S + G+ +++K+I +V+ SP + +++AL+ L G+ VI
Sbjct: 415 IIAPK---LVPISFNMHGTRALQKIIDLVS-SPDQISCIVNALRPNVVLLTKDLNGNHVI 470
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
KCL FI+ A E L ++ H GC + D+ ++ +Q++ I +A
Sbjct: 471 QKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDHASPAQIEQLVEHIVPHAL 530
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAV-- 238
+L + GNYV+Q+VL L +P +AI LS K S V++K + + A
Sbjct: 531 TLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVMEKCIFFAPAAIK 590
Query: 239 HYIVEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQR--LVTKLQQHLAALRV 296
++ EL++ + ++ D + NYVIQTAL D SV QR LV +++ + +++
Sbjct: 591 EKLISELMDEKHLPKLLRDSFANYVIQTAL------DNASVKQRAELVERIKPLIPSIKN 644
Query: 297 MKYG 300
G
Sbjct: 645 TPCG 648
>sp|Q9C8B8|PUM17_ARATH Putative pumilio homolog 17 OS=Arabidopsis thaliana GN=APUM17 PE=5
SV=2
Length = 332
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 131/254 (51%), Gaps = 22/254 (8%)
Query: 62 ITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVIL 121
+T F++ + +K GS S++KL+++ S + A+ RLF +M+ K S V +
Sbjct: 80 LTSDSDYFMVITRNKNGSKSLQKLMRM---SDDMDVFFFVAIMRLFIHVMIDKYASYVAI 136
Query: 122 KCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSR-RKQILHLISVNAA 180
+ + K + +Y L + L+LA + GCI LN I + R +++ ++S NA
Sbjct: 137 QGMRIFKQDKRELMYDHILRYALFLARDQYGCIALNEIIKELDDPYYRDELMDIVSNNAL 196
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQN-AVH 239
LS GN+VVQHVL L D I L G+ V+LS K GS++V++ L+ ++ +
Sbjct: 197 LLSNDAYGNFVVQHVLKLHDSRCTGNIADKLCGYCVELSFKKYGSYIVERLLEVRDIPMA 256
Query: 240 YIVEELL--NSDQILQVASDKYGNYV----------IQTA-----LVETMRQDRLSVHQR 282
IV +LL ++ ++++A + GN+V I TA LV +R R +H+
Sbjct: 257 TIVLDLLACKTEMLIRLARSENGNFVVCKLLELTNDILTADLFYSLVNKLRPYRFLLHRF 316
Query: 283 LVTKLQQHLAALRV 296
+K+ L ++RV
Sbjct: 317 PESKIVAILGSMRV 330
>sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 PE=1 SV=2
Length = 961
Score = 89.4 bits (220), Expect = 3e-17, Method: Composition-based stats.
Identities = 79/311 (25%), Positives = 146/311 (46%), Gaps = 20/311 (6%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q+KL +F V +LM+ +G +V KFIE +Q ++
Sbjct: 640 QHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLMTDVFGNYVIQKFIEHGTPAQREELVK 699
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKV--VAQSPPLLYHVMSALKRLFKFLMMTKPGSS 118
++ Q + S+ +G ++K ++V V Q L+ + + + + + G+
Sbjct: 700 QLAGQ---MVSLSLQMYGCRVIQKALEVIDVDQKTELIRELDGNVLKCVR----DQNGNH 752
Query: 119 VILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQ-ILHLISV 177
VI KC+E + F+ A L+ H GC + +++ I+ I
Sbjct: 753 VIQKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDEILE 812
Query: 178 NAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNA 237
+A +L+ + GNYV QHVL P I L G+ V +S K S VV+K L++ ++
Sbjct: 813 SAFALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQMSQHKYASNVVEKCLEHADS 872
Query: 238 V--HYIVEELL----NSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHL 291
+++EE++ + +L + D++ NYV+Q L + Q R + LV +++ HL
Sbjct: 873 TEREFLIEEIMGKSEEDNHLLAMMKDQFANYVVQKVLEISKDQQR----EILVQRMKIHL 928
Query: 292 AALRVMKYGSN 302
+LR YG +
Sbjct: 929 QSLRKYTYGKH 939
Score = 57.8 bits (138), Expect = 1e-07, Method: Composition-based stats.
Identities = 54/233 (23%), Positives = 103/233 (44%), Gaps = 11/233 (4%)
Query: 73 SVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEPSYNHKN 132
SVD+ GS +++ ++ + V S + LM G+ VI K +E +
Sbjct: 637 SVDQHGSRFIQQKLEHCSDEEKA--SVFSEVLPQASKLMTDVFGNYVIQKFIEHGTPAQR 694
Query: 133 DFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASLSRHRSGNYVV 192
+ + + + L+ GC + ++ + ++ +++ + N R ++GN+V+
Sbjct: 695 EELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTELIRELDGNVLKCVRDQNGNHVI 754
Query: 193 QHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKY---QNAVHYIVEELLNSD 249
Q + I + A RG LS G V+Q+ L++ H I++E+L S
Sbjct: 755 QKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDEILES- 813
Query: 250 QILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVMKYGSN 302
+A D+YGNYV Q L +R ++++ KL ++ + KY SN
Sbjct: 814 -AFALAHDQYGNYVTQHVLERGKPDER----RQIIEKLTGNVVQMSQHKYASN 861
>sp|Q9XI17|PUM20_ARATH Putative pumilio homolog 20 OS=Arabidopsis thaliana GN=APUM20 PE=5
SV=2
Length = 332
Score = 87.8 bits (216), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 120/232 (51%), Gaps = 8/232 (3%)
Query: 45 KFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALK 104
+ I ++ +L + +T FL+ + + GS ++KL+ L +A+
Sbjct: 70 QMISKLDQRKLQTMASLLTSDPDYFLMIARNMNGSKRIQKLLGKTDDVDALF---AAAIL 126
Query: 105 RLFKFLMMTKPGSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMK 164
R F ++ K S V+ + + K +Y+ L + ++A + G + LN+ I +
Sbjct: 127 RRFLHIITDKYASYVVRRGMTVFDKKKKKAMYEHILHYASHIARDKHGNLALNDIITD-- 184
Query: 165 GSRRKQILHLISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCG 224
+ R ++ +I+ A LS GN+V+Q VL L D + I +LRGH+VDLS K G
Sbjct: 185 -AYRNKLFDVIAHKALVLSNDAYGNFVIQRVLKLNDLRSKNNIVVSLRGHFVDLSFQKYG 243
Query: 225 SFVVQKFLKYQNAVHYIVEELL--NSDQILQVASDKYGNYVIQTALVETMRQ 274
S+VV L+ + ++ +VEEL+ D ++++A ++YGN+++ AL T ++
Sbjct: 244 SYVVDVLLETKESMVVVVEELMECEGDMLMRLARNEYGNFLVCKALRVTQKE 295
>sp|P25339|PUF4_YEAST Pumilio homology domain family member 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PUF4 PE=1 SV=2
Length = 888
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 137/284 (48%), Gaps = 15/284 (5%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ G ++LQ++L S+ D +F +T ELM+ +G ++ K +E Q +++
Sbjct: 575 QHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQ-RIVLT 633
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
KI+ F+ S++ G+ +++KLI+ + V+ +L+ L G+ VI
Sbjct: 634 KIS--SPHFVEISLNPHGTRALQKLIECIKTDEEAQI-VVDSLRPYTVQLSKDLNGNHVI 690
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
KCL+ FI+ A + C+ +A H GC L +D+ + + +
Sbjct: 691 QKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVD 750
Query: 181 SLSRHRSGNYVVQHVLNLE------DPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKY 234
L+ GNYVVQ+++ E D I L+ ++LS+ K GS V++K LK
Sbjct: 751 KLTLDPFGNYVVQYIITKEAEKNKYD--YTHKIVHLLKPRAIELSIHKFGSNVIEKILKT 808
Query: 235 QNAVHYIVEELLNS---DQILQVASDKYGNYVIQTALVETMRQD 275
++ E+LN+ I + +D YGNYV+QTAL + +Q+
Sbjct: 809 AIVSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHKQN 852
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 19/203 (9%)
Query: 110 LMMTKPGSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRK 169
LM G+ +I K LE + + + + H + ++ + G L I+ +K
Sbjct: 607 LMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTRALQKLIECIKTDEEA 666
Query: 170 QIL-HLISVNAASLSRHRSGNYVVQHVLNLEDP----FLIDAICFALRGHYVDLSLTKCG 224
QI+ + LS+ +GN+V+Q L P F+ DAI + +D++ + G
Sbjct: 667 QIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSC----IDIATHRHG 722
Query: 225 SFVVQKFLKYQNAVHYIVEELLN-SDQILQVAS----DKYGNYVIQTALVETMRQDRLSV 279
V+Q+ L H E+ N D++L + D +GNYV+Q + + +++
Sbjct: 723 CCVLQRCLD-----HGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDY 777
Query: 280 HQRLVTKLQQHLAALRVMKYGSN 302
++V L+ L + K+GSN
Sbjct: 778 THKIVHLLKPRAIELSIHKFGSN 800
>sp|O81465|PUM15_ARATH Pumilio homolog 15 OS=Arabidopsis thaliana GN=APUM15 PE=3 SV=1
Length = 477
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 134/287 (46%), Gaps = 20/287 (6%)
Query: 4 SQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKIT 63
S LQ ++ G +DK+F + ELM YG VF K +E C + Q+ + L I
Sbjct: 165 SHMLQYVIAKGLKETIDKIFDNLISHVCELMLDYYGHKVFRKLMEKCTDEQITRV-LDIV 223
Query: 64 FQDQL-FLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKP--GSSVI 120
++ F+ V G+ +++ L++ + S + M L + L++TK VI
Sbjct: 224 LEEPFEFVRLCVHTHGTHAIQGLMRSLC-SEEQISRFMETL--CYVSLLLTKDVIAHRVI 280
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
L C ++ + +++C +A + GC L I R ++ I A
Sbjct: 281 LFCFNQFSPSHTRYLLEVIVQNCYQVAIDQNGCCMLKKLIRQSSRELRDPLIKEIISIAV 340
Query: 181 SLSRHRSG----------NYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQK 230
L + G NYVVQ++L L+D + A+ L G+YV LS K GS VVQK
Sbjct: 341 RLCGNCYGTLTPKSLLVRNYVVQYLLRLKDYEVTSALSKHLDGNYVQLSYDKYGSHVVQK 400
Query: 231 FLKYQN-AVHYIVEELLNSDQILQVASDKYGNYVIQTALVETMRQDR 276
L+ + + I+ ELL+ L V D YG+YVIQTA + + +D+
Sbjct: 401 CLESREFSSRRIIAELLSDIDSLLV--DPYGDYVIQTAWIVSEVRDK 445
>sp|Q9ZW07|PUM1_ARATH Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=1 SV=1
Length = 968
Score = 84.7 bits (208), Expect = 7e-16, Method: Composition-based stats.
Identities = 81/316 (25%), Positives = 143/316 (45%), Gaps = 34/316 (10%)
Query: 3 GSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKI 62
GS+++Q+KL + + + ++ + LM+ +G +V KF E Q +
Sbjct: 644 GSRFIQQKLETATTDEKNMVYEEIMPQALVLMTDVFGNYVIQKFFEHGLPPQ------RR 697
Query: 63 TFQDQLF---LLASVDKFGSSSVKKLIKVV------AQSPPLLYHVMSALKRLFKFLMMT 113
++LF L S+ +G ++K I+VV L HVM ++
Sbjct: 698 ELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVR--------D 749
Query: 114 KPGSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKG-SRRKQIL 172
+ G+ V+ KC+E +FI H + L+ H GC + +++ + +++
Sbjct: 750 QNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVM 809
Query: 173 HLISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFL 232
I + L++ + GNYVVQHVL P I L G V +S K S VV+K L
Sbjct: 810 EEILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCL 869
Query: 233 KY--QNAVHYIVEELL---NSDQILQ-VASDKYGNYVIQTALVETMRQDRLSVHQRLVTK 286
+ +V E+L + ++ LQ + D++ NYV+Q L Q R + ++T+
Sbjct: 870 TFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQR----ELILTR 925
Query: 287 LQQHLAALRVMKYGSN 302
++ HL AL+ YG +
Sbjct: 926 IKVHLTALKKYTYGKH 941
Score = 57.0 bits (136), Expect = 2e-07, Method: Composition-based stats.
Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 13/234 (5%)
Query: 73 SVDKFGSSSVK-KLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEPSYNHK 131
S D++GS ++ KL ++Y + + LM G+ VI K E +
Sbjct: 639 SSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALV---LMTDVFGNYVIQKFFEHGLPPQ 695
Query: 132 NDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASLSRHRSGNYV 191
+ + +H L L+ GC + I+ + ++ +++ + + R ++GN+V
Sbjct: 696 RRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNHV 755
Query: 192 VQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKY---QNAVHYIVEELLNS 248
VQ + I+ I GH V LS G V+Q+ L++ + ++EE+L++
Sbjct: 756 VQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMEEILST 815
Query: 249 DQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVMKYGSN 302
+L A D+YGNYV+Q L +R + + L K+ Q + K+ SN
Sbjct: 816 VSML--AQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQ----MSQQKFASN 863
>sp|Q9ZW02|PUM3_ARATH Pumilio homolog 3 OS=Arabidopsis thaliana GN=APUM3 PE=1 SV=1
Length = 964
Score = 84.7 bits (208), Expect = 8e-16, Method: Composition-based stats.
Identities = 81/313 (25%), Positives = 143/313 (45%), Gaps = 28/313 (8%)
Query: 3 GSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKI 62
GS+++Q+KL + + + ++ + LM+ +G +V KF E Q + K+
Sbjct: 640 GSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFGNYVIQKFFEHGLPPQRRELGEKL 699
Query: 63 TFQDQLFLLASVDKFGSSSVKKLIKVV------AQSPPLLYHVMSALKRLFKFLMMTKPG 116
D + L S+ +G ++K I+VV L HVM ++ + G
Sbjct: 700 I--DNVLPL-SLQMYGCRVIQKAIEVVDLDQKIQMVKELDGHVMRCVR--------DQNG 748
Query: 117 SSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKG-SRRKQILHLI 175
+ V+ KC+E +FI H + L+ H GC + +++ + +++ I
Sbjct: 749 NHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQSKVMEEI 808
Query: 176 SVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKY- 234
+ L++ + GNYVVQHVL P I L G V +S K S VV+K L +
Sbjct: 809 LSTVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFG 868
Query: 235 -QNAVHYIVEELL---NSDQILQ-VASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQ 289
+V E+L + ++ LQ + D++ NYV+Q L Q R + ++T+++
Sbjct: 869 GPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQR----ELILTRIKV 924
Query: 290 HLAALRVMKYGSN 302
HL AL+ YG +
Sbjct: 925 HLNALKKYTYGKH 937
Score = 54.7 bits (130), Expect = 9e-07, Method: Composition-based stats.
Identities = 55/233 (23%), Positives = 105/233 (45%), Gaps = 11/233 (4%)
Query: 73 SVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEPSYNHKN 132
S D++GS +++ ++ + + K L LM G+ VI K E +
Sbjct: 635 SSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALA--LMTDVFGNYVIQKFFEHGLPPQR 692
Query: 133 DFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASLSRHRSGNYVV 192
+ + +++ L L+ GC + I+ + ++ Q++ + + R ++GN+VV
Sbjct: 693 RELGEKLIDNVLPLSLQMYGCRVIQKAIEVVDLDQKIQMVKELDGHVMRCVRDQNGNHVV 752
Query: 193 QHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKY---QNAVHYIVEELLNSD 249
Q + I+ I GH V LS G V+Q+ L++ + ++EE+L++
Sbjct: 753 QKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQSKVMEEILSTV 812
Query: 250 QILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVMKYGSN 302
+L D+YGNYV+Q L +R + + L K+ Q + K+ SN
Sbjct: 813 SML--TQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQ----MSQQKFASN 859
>sp|Q4PSD1|PUM14_ARATH Pumilio homolog 14 OS=Arabidopsis thaliana GN=APUM14 PE=2 SV=1
Length = 518
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 156/316 (49%), Gaps = 21/316 (6%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+E S+ L + G +D ++ + G ELM YG V + C+ Q+ ++
Sbjct: 212 KEMSERLGMSIFQGTKETVDAIYNGLIGDICELMVDPYGSDVVQLLMRRCSSEQIVQLVD 271
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQ-SPPLLYHVMSALKRLFKFLMMTKPGSSV 119
+T Q F+ +D G+++++ L+ + + + + ++ ++ + L + V
Sbjct: 272 IVTQQMFQFVNICIDSLGTNAIQVLLTCINERAKDQIPRIVDVVRTVALQLSKSNHAIFV 331
Query: 120 ILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLN-----NFIDNMKGSRRKQILHL 174
IL C H + + +++C +A + GC L + + N++ R++ I+
Sbjct: 332 ILACFRLFPLHCR-LLLELIVQNCHQIAIDQHGCCLLQLCFNKDRVPNLE-IRQRLIMEA 389
Query: 175 ISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKY 234
I+ NA L + GNYVVQ+++ L + +LIDA+ L G+Y L+ K GS VQK LK
Sbjct: 390 IA-NALRLCLNCYGNYVVQYIVELNNRYLIDALVRQLIGNYAHLARNKYGSHAVQKLLK- 447
Query: 235 QNAVHYIVEELLNSDQILQVAS---DKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHL 291
+ +I ++ D + ++ + D +GNYVIQTA + + V + L +++++
Sbjct: 448 ---LRWIDSRVIVIDLLREIDTLLLDPFGNYVIQTAWFVS----KDDVRRMLRYHIERNI 500
Query: 292 AALRVMKYGSNKEIQK 307
+R K+G NK ++K
Sbjct: 501 PMMRCNKFG-NKVLEK 515
>sp|Q9C5E7|PUM6_ARATH Pumilio homolog 6, chloroplastic OS=Arabidopsis thaliana GN=APUM6
PE=1 SV=1
Length = 861
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 140/311 (45%), Gaps = 24/311 (7%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q+KL + +F + +LM+ +G +V KF E N +Q +
Sbjct: 544 QHGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGNYVIQKFFEYGNSTQRKELAD 603
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
++ Q + S+ +G ++K + V+ P + L + + G+ VI
Sbjct: 604 QLMGQ---IVPLSLQMYGCRVIQKALDVI--EPDQRVRLARELDGQVMRCVRDQNGNHVI 658
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRR-----KQILHLI 175
KC+E K F+ A L+ H GC + ++ + ++IL +
Sbjct: 659 QKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDHQCRFITEEILESV 718
Query: 176 SVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQ 235
V LS+ + GNYV QHVL + I L GH V LSL K S V++K L+Y
Sbjct: 719 CV----LSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLSLHKFASNVIEKCLEYG 774
Query: 236 NAVHY--IVEELLNSDQ----ILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQ 289
V I++E+ D+ +L + D+YGNYV+Q RL+ L ++++
Sbjct: 775 GRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTADQRLT----LFSRVRM 830
Query: 290 HLAALRVMKYG 300
H +AL+ YG
Sbjct: 831 HASALKKYTYG 841
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 119/297 (40%), Gaps = 52/297 (17%)
Query: 9 EKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKITFQDQL 68
E+L SG R D ++G E + Q+G + +E+C + A + +I
Sbjct: 518 EELKSGKGRRFD--LSDITGHIVEFSADQHGSRFIQQKLENCKPEEKAAVFREI------ 569
Query: 69 FLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEPSY 128
L H + +F G+ VI K E
Sbjct: 570 ---------------------------LPHACKLMTDVF--------GNYVIQKFFEYGN 594
Query: 129 NHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASLSRHRSG 188
+ + + + + L+ GC + +D ++ +R ++ + R ++G
Sbjct: 595 STQRKELADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRVRLARELDGQVMRCVRDQNG 654
Query: 189 NYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLK---YQNAVHYIVEEL 245
N+V+Q + + + +A RG LS+ G V+Q+ L+ + + +I EE+
Sbjct: 655 NHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDHQCRFITEEI 714
Query: 246 LNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVMKYGSN 302
L S + ++ D+YGNYV Q L + ++R +R+ KL H+ L + K+ SN
Sbjct: 715 LES--VCVLSKDQYGNYVTQHVLEKGTSEER----ERIGRKLSGHIVQLSLHKFASN 765
Score = 36.2 bits (82), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 13/145 (8%)
Query: 145 YLACHEQGCIN------LNNFIDNMK-GSRRKQILHLISVNAASLSRHRSGNYVVQHVLN 197
Y QG + L NF++ +K G R+ L I+ + S + G+ +Q L
Sbjct: 496 YPGWQPQGSLEGANGPRLCNFLEELKSGKGRRFDLSDITGHIVEFSADQHGSRFIQQKLE 555
Query: 198 LEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVHY--IVEELLNSDQILQVA 255
P A+ + H L G++V+QKF +Y N+ + ++L+ QI+ ++
Sbjct: 556 NCKPEEKAAVFREILPHACKLMTDVFGNYVIQKFFEYGNSTQRKELADQLMG--QIVPLS 613
Query: 256 SDKYGNYVIQTAL--VETMRQDRLS 278
YG VIQ AL +E ++ RL+
Sbjct: 614 LQMYGCRVIQKALDVIEPDQRVRLA 638
>sp|P25822|PUM_DROME Maternal protein pumilio OS=Drosophila melanogaster GN=pum PE=1 SV=2
Length = 1533
Score = 82.0 bits (201), Expect = 4e-15, Method: Composition-based stats.
Identities = 77/317 (24%), Positives = 148/317 (46%), Gaps = 23/317 (7%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q+KL + +F + + LM+ +G +V KF E Q + +
Sbjct: 1123 QHGSRFIQQKLERATAAEKQMVFSEILAAAYSLMTDVFGNYVIQKFFEFGTPEQKNTLGM 1182
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
++ L ++ +G ++K ++ + SP ++ L + + G+ V+
Sbjct: 1183 QVKGH---VLQLALQMYGCRVIQKALESI--SPEQQQEIVHELDGHVLKCVKDQNGNHVV 1237
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 1238 QKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDELHEHTE 1297
Query: 181 SLSRHRSGNYVVQHVL---NLED-PFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQN 236
L + + GNYV+QHVL ED LI+++ RG + LS K S VV+K + +
Sbjct: 1298 QLIQDQYGNYVIQHVLEHGKQEDKSILINSV----RGKVLVLSQHKFASNVVEKCVTHAT 1353
Query: 237 AVHY--IVEEL--LNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLA 292
+++E+ N + + + D+Y NYV+Q +++ +L ++L+TK++ H+A
Sbjct: 1354 RGERTGLIDEVCTFNDNALHVMMKDQYANYVVQK-MIDVSEPTQL---KKLMTKIRPHMA 1409
Query: 293 ALRVMKYGS--NKEIQK 307
ALR YG N +++K
Sbjct: 1410 ALRKYTYGKHINAKLEK 1426
Score = 67.4 bits (163), Expect = 1e-10, Method: Composition-based stats.
Identities = 60/235 (25%), Positives = 113/235 (48%), Gaps = 16/235 (6%)
Query: 73 SVDKFGSSSVK-KLIKVVAQSPPLLY-HVMSALKRLFKFLMMTKPGSSVILKCLEPSYNH 130
S D+ GS ++ KL + A +++ +++A L M G+ VI K E
Sbjct: 1120 SQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSL----MTDVFGNYVIQKFFEFGTPE 1175
Query: 131 KNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASLSRHRSGNY 190
+ + + H L LA GC + ++++ ++++I+H + + + ++GN+
Sbjct: 1176 QKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQQEIVHELDGHVLKCVKDQNGNH 1235
Query: 191 VVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVHY--IVEELL-N 247
VVQ + DP + I A +G LS G V+Q+ L++ A I++EL +
Sbjct: 1236 VVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDELHEH 1295
Query: 248 SDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVMKYGSN 302
++Q++Q D+YGNYVIQ L ++D+ L+ ++ + L K+ SN
Sbjct: 1296 TEQLIQ---DQYGNYVIQHVLEHGKQEDK----SILINSVRGKVLVLSQHKFASN 1343
Score = 43.1 bits (100), Expect = 0.003, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 4/129 (3%)
Query: 142 HCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASLSRHRSGNYVVQHVLNLEDP 201
H + + + G + ++ + ++ + I A SL GNYV+Q P
Sbjct: 1115 HIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSLMTDVFGNYVIQKFFEFGTP 1174
Query: 202 FLIDAICFALRGHYVDLSLTKCGSFVVQKFLK--YQNAVHYIVEELLNSDQILQVASDKY 259
+ + ++GH + L+L G V+QK L+ IV EL +L+ D+
Sbjct: 1175 EQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQQEIVHEL--DGHVLKCVKDQN 1232
Query: 260 GNYVIQTAL 268
GN+V+Q +
Sbjct: 1233 GNHVVQKCI 1241
Score = 40.0 bits (92), Expect = 0.021, Method: Composition-based stats.
Identities = 49/238 (20%), Positives = 98/238 (41%), Gaps = 13/238 (5%)
Query: 3 GSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKI 62
G + +Q+ L S ++ + G + + Q G V K IE + L II
Sbjct: 1197 GCRVIQKALESISPEQQQEIVHELDGHVLKCVKDQNGNHVVQKCIECVDPVALQFII--N 1254
Query: 63 TFQDQLFLLASVDKFGSSSVKKLIK--VVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
F+ Q++ L S +G ++++++ Q+ P+L + ++L + + G+ VI
Sbjct: 1255 AFKGQVYSL-STHPYGCRVIQRILEHCTAEQTTPILDELHEHTEQLIQ----DQYGNYVI 1309
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDN-MKGSRRKQILHLISVNA 179
LE + + L L+ H+ + + + +G R I + + N
Sbjct: 1310 QHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVVEKCVTHATRGERTGLIDEVCTFND 1369
Query: 180 ASLS---RHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKY 234
+L + + NYVVQ ++++ +P + + +R H L G + K KY
Sbjct: 1370 NALHVMMKDQYANYVVQKMIDVSEPTQLKKLMTKIRPHMAALRKYTYGKHINAKLEKY 1427
>sp|Q9SS47|PUM4_ARATH Pumilio homolog 4 OS=Arabidopsis thaliana GN=APUM4 PE=1 SV=2
Length = 1003
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 144/308 (46%), Gaps = 22/308 (7%)
Query: 3 GSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKI 62
GS+++Q+KL + + +F + + LM+ +G +V KF E Q + ++
Sbjct: 678 GSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKFFEHGTTKQRKELAEQV 737
Query: 63 TFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMM---TKPGSSV 119
T L S+ +G ++K ++VV L +K L +M + G+ V
Sbjct: 738 TGH---VLALSLQMYGCRVIQKALEVVE-----LEQQARMVKELDGSVMKCVHDQNGNHV 789
Query: 120 ILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKG-SRRKQILHLISVN 178
I KC+E FI + L L+ H GC + ++++ ++ I+ I +
Sbjct: 790 IQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMDS 849
Query: 179 AASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAV 238
+L++ + GNYV+QH++ P I L G V +S K S VV+K L +
Sbjct: 850 VCTLAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASNVVEKCLTFGGPE 909
Query: 239 --HYIVEELL---NSDQILQ-VASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLA 292
+V E+L + ++ LQ + D +GNYV+Q L ET L++ ++++++ HL
Sbjct: 910 ERQVLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVL-ETCDDQSLAL---ILSRIKVHLN 965
Query: 293 ALRVMKYG 300
AL+ YG
Sbjct: 966 ALKRYTYG 973
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 92/230 (40%), Gaps = 45/230 (19%)
Query: 112 MTKPGSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQI 171
M + GS I + LE + + + + I+ L + L G + F ++ +RK++
Sbjct: 674 MDQYGSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKFFEHGTTKQRKEL 733
Query: 172 LHLISVNAASLSRHRSGNYVVQ---HVLNLE----------------------------- 199
++ + +LS G V+Q V+ LE
Sbjct: 734 AEQVTGHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGNHVIQKC 793
Query: 200 -DPFLIDAICFALR---GHYVDLSLTKCGSFVVQKFLKYQNAVHY---IVEELLNSDQIL 252
+ D I F + G + LS G V+Q+ L++ + + I+EE++ D +
Sbjct: 794 IERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIM--DSVC 851
Query: 253 QVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVMKYGSN 302
+A D+YGNYVIQ + +R ++ KL + + K+ SN
Sbjct: 852 TLAQDQYGNYVIQHIIQHGKPHER----SEIINKLAGQIVKMSQQKFASN 897
>sp|Q8TB72|PUM2_HUMAN Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=2
Length = 1066
Score = 79.3 bits (194), Expect = 3e-14, Method: Composition-based stats.
Identities = 70/311 (22%), Positives = 137/311 (44%), Gaps = 18/311 (5%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q+KL +F + ++LM+ +G +V KF E + Q +
Sbjct: 738 QHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALAT 797
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
+I + + LA + +G ++K ++ ++ ++ ++ L + + G+ V+
Sbjct: 798 RI--RGHVLPLA-LQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVV 854
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 855 QKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTE 914
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH- 239
L + + GNYV+QHVL P I +RG + LS K S VV+K + + +
Sbjct: 915 QLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAER 974
Query: 240 -YIVEELLNSDQ-----ILQVASDKYGNYVIQTALVETMRQDRLSVHQR--LVTKLQQHL 291
+++E+ + + + D+Y NYV+Q + D QR ++ K++ H+
Sbjct: 975 ALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMI------DMAEPAQRKIIMHKIRPHI 1028
Query: 292 AALRVMKYGSN 302
LR YG +
Sbjct: 1029 TTLRKYTYGKH 1039
Score = 41.2 bits (95), Expect = 0.009, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 99/243 (40%), Gaps = 18/243 (7%)
Query: 3 GSQYLQEKLSS--GDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
G + +Q+ L S D +++ ++ + G + + Q G V K IE L II
Sbjct: 812 GCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFII- 870
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIK--VVAQSPPLLYHVMSALKRLFKFLMMTKPGSS 118
F+ Q+F+L S +G ++++++ Q+ P+L + ++L + + G+
Sbjct: 871 -DAFKGQVFVL-STHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQ----DQYGNY 924
Query: 119 VILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVN 178
VI LE I L L+ H+ + + + + R ++ +
Sbjct: 925 VIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQ 984
Query: 179 -------AASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKF 231
++ + + NYVVQ ++++ +P I +R H L G ++ K
Sbjct: 985 NDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKL 1044
Query: 232 LKY 234
KY
Sbjct: 1045 EKY 1047
>sp|Q9FMH4|PUM13_ARATH Putative pumilio homolog 13 OS=Arabidopsis thaliana GN=APUM13 PE=3
SV=1
Length = 527
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 143/309 (46%), Gaps = 12/309 (3%)
Query: 4 SQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKIT 63
S+ L++ + G +D +F + ELM +G V I C+ Q+ LI+ +T
Sbjct: 223 SKELEKTIFVGTKETIDMIFDGLIVGICELMVDPFGNDVVKLLIGKCSSEQIILIVDVVT 282
Query: 64 FQDQLFLLASVDKFGSSSVKKLIKVV-AQSPPLLYHVMSALKRLFKFLMMTKPGSSVILK 122
F+ + G+ +++ L+ + ++ + +M A+ + L VIL
Sbjct: 283 RHISKFVNICFNPIGTLAIQVLLTSIHERANNQIPRIMDAISSVALQLTRNTNAKYVILA 342
Query: 123 CLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSR---RKQILHLISVNA 179
C + + + + +HC +A + GC L D + R++++ + +A
Sbjct: 343 CFRMFTSSQCRRLLEVVSQHCYQIAIDQNGCCLLQQCFDKERVPNHEIRQRLISEVIEHA 402
Query: 180 ASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQN-AV 238
L + GNYVVQ+V+ L++ D + L +Y L+ K GS VVQK LK +
Sbjct: 403 LKLCLNCHGNYVVQYVVELDNQHETDLLVNKLLRNYAHLARNKYGSHVVQKLLKLRGIDS 462
Query: 239 HYIVEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVMK 298
IV +LL L + D +GNYVIQTA + + V Q L +++++ +R K
Sbjct: 463 KLIVVDLLRGIDTLLL--DPFGNYVIQTAWFVS----KEDVRQMLRYYIERNIRLMRCNK 516
Query: 299 YGSNKEIQK 307
+G NK ++K
Sbjct: 517 FG-NKILEK 524
>sp|Q80U58|PUM2_MOUSE Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=2
Length = 1066
Score = 79.0 bits (193), Expect = 5e-14, Method: Composition-based stats.
Identities = 70/311 (22%), Positives = 137/311 (44%), Gaps = 18/311 (5%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q+KL +F + ++LM+ +G +V KF E + Q +
Sbjct: 738 QHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALAT 797
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
+I + + LA + +G ++K ++ ++ ++ ++ L + + G+ V+
Sbjct: 798 RI--RGHVLPLA-LQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVV 854
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAA 180
KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 855 QKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTE 914
Query: 181 SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH- 239
L + + GNYV+QHVL P I +RG + LS K S VV+K + + +
Sbjct: 915 QLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAER 974
Query: 240 -YIVEELLNSDQ-----ILQVASDKYGNYVIQTALVETMRQDRLSVHQR--LVTKLQQHL 291
+++E+ + + + D+Y NYV+Q + D QR ++ K++ H+
Sbjct: 975 ALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMI------DMAEPAQRKIIMHKIRPHI 1028
Query: 292 AALRVMKYGSN 302
LR YG +
Sbjct: 1029 TTLRKYTYGKH 1039
Score = 41.2 bits (95), Expect = 0.009, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 99/243 (40%), Gaps = 18/243 (7%)
Query: 3 GSQYLQEKLSS--GDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
G + +Q+ L S D +++ ++ + G + + Q G V K IE L II
Sbjct: 812 GCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFII- 870
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIK--VVAQSPPLLYHVMSALKRLFKFLMMTKPGSS 118
F+ Q+F+L S +G ++++++ Q+ P+L + ++L + + G+
Sbjct: 871 -DAFKGQVFVL-STHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQ----DQYGNY 924
Query: 119 VILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVN 178
VI LE I L L+ H+ + + + + R ++ +
Sbjct: 925 VIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQ 984
Query: 179 -------AASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKF 231
++ + + NYVVQ ++++ +P I +R H L G ++ K
Sbjct: 985 NDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKL 1044
Query: 232 LKY 234
KY
Sbjct: 1045 EKY 1047
>sp|Q80U78|PUM1_MOUSE Pumilio homolog 1 OS=Mus musculus GN=Pum1 PE=1 SV=2
Length = 1189
Score = 78.2 bits (191), Expect = 8e-14, Method: Composition-based stats.
Identities = 73/311 (23%), Positives = 139/311 (44%), Gaps = 18/311 (5%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIE-SCNESQLALII 59
+ GS+++Q KL + +F + ++LM +G +V KF E +E +LAL
Sbjct: 861 QHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSHEQKLAL-- 918
Query: 60 LKITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSV 119
+ + LA + +G ++K ++ + ++ ++ L + + G+ V
Sbjct: 919 -AERIRGHVLSLA-LQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHV 976
Query: 120 ILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNA 179
+ KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 977 VQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHT 1036
Query: 180 ASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH 239
L + + GNYV+QHVL P I +RG+ + LS K S VV+K + + +
Sbjct: 1037 EQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTE 1096
Query: 240 --YIVEELLNSDQ-----ILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQHL 291
+++E+ + + + D+Y NYV+Q + V Q ++ +H K++ H+
Sbjct: 1097 RAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMH-----KIRPHI 1151
Query: 292 AALRVMKYGSN 302
A LR YG +
Sbjct: 1152 ATLRKYTYGKH 1162
Score = 38.1 bits (87), Expect = 0.090, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 103/243 (42%), Gaps = 18/243 (7%)
Query: 3 GSQYLQEKLS--SGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
G + +Q+ L D ++++++ + G + + Q G V K IE L II
Sbjct: 935 GCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFII- 993
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIK--VVAQSPPLLYHVMSALKRLFKFLMMTKPGSS 118
F+ Q+F L S +G ++++++ + Q+ P+L + ++L + + G+
Sbjct: 994 -DAFKGQVFAL-STHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQ----DQYGNY 1047
Query: 119 VILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQIL-HLISV 177
VI LE I + L L+ H+ + + + + R ++ + ++
Sbjct: 1048 VIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTM 1107
Query: 178 NAA------SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKF 231
N ++ + + NYVVQ ++++ +P + +R H L G ++ K
Sbjct: 1108 NDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKL 1167
Query: 232 LKY 234
KY
Sbjct: 1168 EKY 1170
>sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2 OS=Arabidopsis thaliana GN=APUM2 PE=1 SV=1
Length = 972
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 143/311 (45%), Gaps = 28/311 (9%)
Query: 3 GSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKI 62
GS+++Q+KL + S + ++ + LM+ +G +V KF E L +
Sbjct: 648 GSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFGNYVIQKFFEH------GLPPQRR 701
Query: 63 TFQDQLF---LLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMM---TKPG 116
D+LF L S+ +G ++K I+VV L + +K L +M + G
Sbjct: 702 ELADKLFDNVLPLSLQMYGCRVIQKAIEVVD-----LDQKIKMVKELDGHVMRCVRDQNG 756
Query: 117 SSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDN-MKGSRRKQILHLI 175
+ V+ KC+E +FI + + L+ H GC + +++ + +++ I
Sbjct: 757 NHVVQKCIECVPEENIEFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMDEI 816
Query: 176 SVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQ 235
+ L++ + GNYV+QHVL P I L G V +S K S VV+K L +
Sbjct: 817 MSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFG 876
Query: 236 NAV--HYIVEELLNS---DQILQ-VASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQ 289
++V E+L + ++ LQ + D++ NYV+Q L Q R + ++ +++
Sbjct: 877 GPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQR----ELILGRIKV 932
Query: 290 HLAALRVMKYG 300
HL AL+ YG
Sbjct: 933 HLNALKKYTYG 943
>sp|Q2VB19|PUM1_CHICK Pumilio homolog 1 OS=Gallus gallus GN=PUM1 PE=2 SV=1
Length = 1189
Score = 75.9 bits (185), Expect = 4e-13, Method: Composition-based stats.
Identities = 73/311 (23%), Positives = 138/311 (44%), Gaps = 18/311 (5%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCN-ESQLALII 59
+ GS+++Q KL +F + ++LM +G +V KF E + E +LAL
Sbjct: 861 QHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLAL-- 918
Query: 60 LKITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSV 119
+ + LA + +G ++K ++ + ++ ++ L + + G+ V
Sbjct: 919 -AERIRGHVLSLA-LQMYGCRVIQKALEFIPPDQQVINEMVRELDGHVLKCVKDQNGNHV 976
Query: 120 ILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNA 179
+ KC+E FI A L+ H GC + +++ + IL + +
Sbjct: 977 VQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTLPILEELHQHT 1036
Query: 180 ASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH 239
L + + GNYV+QHVL P I +RG+ + LS K S VV+K + + +
Sbjct: 1037 EQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTE 1096
Query: 240 --YIVEELLNSDQ-----ILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQHL 291
+++E+ + + + D+Y NYV+Q + V Q ++ +H K++ H+
Sbjct: 1097 RAMLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMH-----KIRPHI 1151
Query: 292 AALRVMKYGSN 302
A LR YG +
Sbjct: 1152 ATLRKYTYGKH 1162
Score = 38.9 bits (89), Expect = 0.054, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 103/243 (42%), Gaps = 18/243 (7%)
Query: 3 GSQYLQEKLS--SGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
G + +Q+ L D ++++++ + G + + Q G V K IE L II
Sbjct: 935 GCRVIQKALEFIPPDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFII- 993
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIK--VVAQSPPLLYHVMSALKRLFKFLMMTKPGSS 118
F+ Q+F L S +G ++++++ + Q+ P+L + ++L + + G+
Sbjct: 994 -DAFKGQVFAL-STHPYGCRVIQRILEHCLPEQTLPILEELHQHTEQLVQ----DQYGNY 1047
Query: 119 VILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQIL-HLISV 177
VI LE I + L L+ H+ + + + + R ++ + ++
Sbjct: 1048 VIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAMLIDEVCTM 1107
Query: 178 NAA------SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKF 231
N ++ + + NYVVQ ++++ +P + +R H L G ++ K
Sbjct: 1108 NDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKHILAKL 1167
Query: 232 LKY 234
KY
Sbjct: 1168 EKY 1170
>sp|Q5R5X3|PUM1_PONAB Pumilio homolog 1 OS=Pongo abelii GN=PUM1 PE=2 SV=1
Length = 1186
Score = 72.8 bits (177), Expect = 3e-12, Method: Composition-based stats.
Identities = 76/317 (23%), Positives = 138/317 (43%), Gaps = 32/317 (10%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCN-ESQLALII 59
+ GS+++Q KL +F + ++LM +G +V KF E + E +LAL
Sbjct: 860 QHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLAL-- 917
Query: 60 LKITFQDQLFLLASVDKFGSSSVKKLIKVVAQSP------PLLYHVMSALKRLFKFLMMT 113
+ + LA + +G ++K ++ + L HV+ +K
Sbjct: 918 -AERIRGHVLSLA-LQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVK--------D 967
Query: 114 KPGSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 173
+ G+ V+ KC+E FI A L+ H GC + +++ + IL
Sbjct: 968 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILE 1027
Query: 174 LISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLK 233
+ + L + + GNYV+QHVL P I +RG+ + LS K S VV+K +
Sbjct: 1028 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 1087
Query: 234 YQNAVH--YIVEELLNSDQ-----ILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVT 285
+ + +++E+ + + + D+Y NYV+Q + V Q ++ +H
Sbjct: 1088 HASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMH----- 1142
Query: 286 KLQQHLAALRVMKYGSN 302
K++ H+A LR YG +
Sbjct: 1143 KIRPHIATLRKYTYGKH 1159
Score = 34.7 bits (78), Expect = 0.90, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 100/241 (41%), Gaps = 16/241 (6%)
Query: 3 GSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKI 62
G + +Q+ L S +++ + G + + Q G V K IE L II
Sbjct: 934 GCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFII--D 991
Query: 63 TFQDQLFLLASVDKFGSSSVKKLIK--VVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
F+ Q+F L S +G ++++++ + Q+ P+L + ++L + + G+ VI
Sbjct: 992 AFKGQVFAL-STHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQ----DQYGNYVI 1046
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQIL-HLISVNA 179
LE I + L L+ H+ + + + + R ++ + ++N
Sbjct: 1047 QHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMND 1106
Query: 180 A------SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLK 233
++ + + NYVVQ ++++ +P + +R H L G ++ K K
Sbjct: 1107 GPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1166
Query: 234 Y 234
Y
Sbjct: 1167 Y 1167
>sp|Q14671|PUM1_HUMAN Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3
Length = 1186
Score = 72.8 bits (177), Expect = 3e-12, Method: Composition-based stats.
Identities = 76/317 (23%), Positives = 138/317 (43%), Gaps = 32/317 (10%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCN-ESQLALII 59
+ GS+++Q KL +F + ++LM +G +V KF E + E +LAL
Sbjct: 860 QHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLAL-- 917
Query: 60 LKITFQDQLFLLASVDKFGSSSVKKLIKVVAQSP------PLLYHVMSALKRLFKFLMMT 113
+ + LA + +G ++K ++ + L HV+ +K
Sbjct: 918 -AERIRGHVLSLA-LQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVK--------D 967
Query: 114 KPGSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 173
+ G+ V+ KC+E FI A L+ H GC + +++ + IL
Sbjct: 968 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILE 1027
Query: 174 LISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLK 233
+ + L + + GNYV+QHVL P I +RG+ + LS K S VV+K +
Sbjct: 1028 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 1087
Query: 234 YQNAVH--YIVEELLNSDQ-----ILQVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVT 285
+ + +++E+ + + + D+Y NYV+Q + V Q ++ +H
Sbjct: 1088 HASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMH----- 1142
Query: 286 KLQQHLAALRVMKYGSN 302
K++ H+A LR YG +
Sbjct: 1143 KIRPHIATLRKYTYGKH 1159
Score = 34.7 bits (78), Expect = 0.90, Method: Composition-based stats.
Identities = 48/241 (19%), Positives = 100/241 (41%), Gaps = 16/241 (6%)
Query: 3 GSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKI 62
G + +Q+ L S +++ + G + + Q G V K IE L II
Sbjct: 934 GCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFII--D 991
Query: 63 TFQDQLFLLASVDKFGSSSVKKLIK--VVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVI 120
F+ Q+F L S +G ++++++ + Q+ P+L + ++L + + G+ VI
Sbjct: 992 AFKGQVFAL-STHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQ----DQYGNYVI 1046
Query: 121 LKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQIL-HLISVNA 179
LE I + L L+ H+ + + + + R ++ + ++N
Sbjct: 1047 QHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMND 1106
Query: 180 A------SLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLK 233
++ + + NYVVQ ++++ +P + +R H L G ++ K K
Sbjct: 1107 GPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 1166
Query: 234 Y 234
Y
Sbjct: 1167 Y 1167
>sp|O94462|PUF3_SCHPO mRNA-binding protein puf3 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=puf3 PE=2 SV=4
Length = 732
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 143/308 (46%), Gaps = 18/308 (5%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFW-VVSGFTFELMSGQYGRFVFGKFIESCNESQLALII 59
+ GS+++Q+KL++ + +F + S +LM +G +V K+ E NE Q +++
Sbjct: 408 QHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMMDIFGNYVVQKYFEFGNEKQKQILL 467
Query: 60 LKITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSV 119
+I + +F L S+ +G V+K I+ + SP ++ L + + G+ V
Sbjct: 468 SQI--KGHVFSL-SLQMYGCRVVQKAIEYI--SPEHQVQLIQELDGHVLDCVCDQNGNHV 522
Query: 120 ILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNA 179
I K +E FI +A L+ H GC + I++ S RK I+ + +
Sbjct: 523 IQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRAIEHCH-SERKLIIEELLPHI 581
Query: 180 ASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVH 239
L++ + GNYVVQH+L I + H + LS K S VV++ + Y + V
Sbjct: 582 LKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCHKFASNVVERCISYISDVD 641
Query: 240 -------YIVEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLA 292
I E+ N ++ + DKY NYVIQ L + ++R L++ + H++
Sbjct: 642 RRRILNKIISEKAENCSILMLMMKDKYANYVIQKLLDASPEEER----DLLISYIYPHIS 697
Query: 293 ALRVMKYG 300
L+ YG
Sbjct: 698 VLKKFTYG 705
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 7/194 (3%)
Query: 110 LMMTKPGSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRK 169
LMM G+ V+ K E + + H L+ GC + I+ + +
Sbjct: 441 LMMDIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQV 500
Query: 170 QILHLISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQ 229
Q++ + + ++GN+V+Q + D + I ALR LS G V+Q
Sbjct: 501 QLIQELDGHVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQ 560
Query: 230 KFLKY-QNAVHYIVEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQ 288
+ +++ + I+EELL IL++ D+YGNYV+Q L D+ + ++
Sbjct: 561 RAIEHCHSERKLIIEELL--PHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMI---- 614
Query: 289 QHLAALRVMKYGSN 302
HL L K+ SN
Sbjct: 615 DHLLFLSCHKFASN 628
>sp|O74438|MCP2_SCHPO Meiotic coiled-coil protein 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mcp2 PE=4 SV=1
Length = 703
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 86/163 (52%), Gaps = 12/163 (7%)
Query: 146 LACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASLSRHRSGNYVVQHVLNLEDPFLID 205
+A E G + + N +N +++ + I + ++R + GN+VVQH++ +
Sbjct: 517 VAVGENGSLVVQNMFENCVEKDKRECIEEIIFHLDGIARGQWGNWVVQHMVENGQGEDLK 576
Query: 206 AICFALRGHYVDLSLTKCGSFVVQKFLKY--QNAVHYIVEELLNS------DQILQVASD 257
+ AL V+ S+ + S V++K +K +N + ++++ N+ ++ +ASD
Sbjct: 577 RVIDALLNRAVEFSIDQFASKVIEKAIKSGPKNFISLYLKQITNARVDRTRQPLIDIASD 636
Query: 258 KYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVMKYG 300
+YGNY+IQ + ++ + + ++T +++H+ +LR KYG
Sbjct: 637 QYGNYLIQ----QIIQLGQPAEKNLVITHIKKHMVSLRGSKYG 675
>sp|Q10238|MPF1_SCHPO Meiotic PUF family protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mpf1 PE=4 SV=1
Length = 581
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 128/307 (41%), Gaps = 23/307 (7%)
Query: 7 LQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKITFQD 66
LQ++L + D L + F+ LM ++G F+ K E E+QL F
Sbjct: 273 LQQQLKNEDIEDNINLINTILPFSVTLMKNKFGNFLIQKCFEYSTEAQLQSFSY---FLK 329
Query: 67 QLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEP 126
+ S+D FGS ++K +++ + +++ L +M + V K E
Sbjct: 330 KHVKELSIDAFGSHVLQKSLEIYPER--FTNNLIEELIECLPATLMQRHSCHVWQKFFET 387
Query: 127 SYNHKNDFIY----QAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASL 182
D I+ + L ++ E G + + +N K ++ L I N +
Sbjct: 388 RRKSLVDGIFDHFNKKMQGKWLQVSVSEMGSLVVQTIFENCKEKDKRTCLDEIINNMDQI 447
Query: 183 SRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVHY-- 240
+ GN+V+QH++ I +L S + S VV++ L+ + +
Sbjct: 448 ICGQWGNWVIQHIIEHGSEPDKQRILNSLLKEVESYSTNRYASKVVERALRVCHVTFFDR 507
Query: 241 IVEELLNSDQIL------QVASDKYGNYVIQTAL-VETMRQDRLSVHQRLVTKLQQHLAA 293
V+E+ L ++AS++YGNY++Q L V T Q L + L++H+ +
Sbjct: 508 YVKEITTPQNELPTIFLQEIASNQYGNYIVQYLLQVATPSQINL-----MAEHLKKHMVS 562
Query: 294 LRVMKYG 300
LR KYG
Sbjct: 563 LRGHKYG 569
>sp|Q09829|YAD3_SCHPO Pumilio domain-containing protein C4G8.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC4G8.03c PE=4 SV=1
Length = 780
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 2/152 (1%)
Query: 116 GSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLI 175
G+ V+ KC+ K + ++ + E+ + LA + GC L +D G ++++++ I
Sbjct: 585 GTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTNGDIQERLVNSI 644
Query: 176 SVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQ 235
+ L ++ GNY+VQHVL L + I G+ LSL K S +++ ++
Sbjct: 645 IKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKFSSNAIEQCIRTA 704
Query: 236 NAV--HYIVEELLNSDQILQVASDKYGNYVIQ 265
+ +++E L+ I Q+ D Y NYV+Q
Sbjct: 705 SPSTREQMLQEFLSFPNIEQLLDDCYANYVMQ 736
>sp|Q9LNI2|PUM22_ARATH Putative pumilio homolog 22 OS=Arabidopsis thaliana GN=APUM22 PE=3
SV=1
Length = 361
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 11/134 (8%)
Query: 170 QILHLISVNAASLSRHRS-GNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVV 228
QIL LI V+A L++ GN QH +NL I L+ HY++LS K GS +V
Sbjct: 203 QILRLIGVHALYLTKDPDMGNKTFQHAINLHHQDCTTFIACGLQSHYIELSFLKHGSKIV 262
Query: 229 QKFLKYQNAVHYIVEELL-----NSDQILQVASDKYGNYVIQT--ALVETMRQDRLSVHQ 281
+ + + ++ +V ++ + D ++++A+D+YGN +++ AL + ++D
Sbjct: 263 EMLIDDRISMVPLVLLMMEIVKCDEDTLVRLATDEYGNNILKKFLALAKEHKEDFFG--- 319
Query: 282 RLVTKLQQHLAALR 295
LV KL L +LR
Sbjct: 320 DLVDKLNPLLDSLR 333
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 142 HCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASLSRHRSGNYVVQHVLNLE 199
H L L+ + GC+ L I + + L LI+ +A SLS H G ++QHVL L+
Sbjct: 32 HLLVLSSDDNGCVILKKVITIADDFLKDEFLDLIAQHAHSLSMHDLGISLIQHVLELD 89
>sp|Q07807|PUF3_YEAST mRNA-binding protein PUF3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PUF3 PE=1 SV=1
Length = 879
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Query: 165 GSRRKQILHLISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCG 224
S ++ I + I +A LS GNYV+Q + + +G+ LSL
Sbjct: 565 ASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYA 624
Query: 225 SFVVQKFLKYQNAVHYIVEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLV 284
V+QK L+Y ++ I L SD +LQ+ D+ GN+VIQ A +ET+ ++L ++
Sbjct: 625 CRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKA-IETIPIEKLPF---IL 680
Query: 285 TKLQQHLAALRVMKYG 300
+ L H+ L YG
Sbjct: 681 SSLTGHIYHLSTHSYG 696
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 129/290 (44%), Gaps = 36/290 (12%)
Query: 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
+ GS+++Q +L++ + + +F + EL + +G +V KF E I
Sbjct: 550 QHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFE------FGSKIQ 603
Query: 61 KITFQDQL---FLLASVDKFGSSSVKKLIKVV--AQSPPLLYHVMSALKRLFKFLMMTKP 115
K T DQ S+ + ++K ++ + Q L+ + ++ ++ K +
Sbjct: 604 KNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIK----DQN 659
Query: 116 GSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLI 175
G+ VI K +E K FI + H +L+ H GC + ++ ++ IL+ +
Sbjct: 660 GNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNEL 719
Query: 176 SVNAASLSRHRSGNYVVQHVLNLEDPF----LID---AICFALRGHYVDLSLTKCGSFVV 228
L + + GNYV+Q+VL +D F ++D I + + V+ S K S VV
Sbjct: 720 KDFIPYLIQDQYGNYVIQYVLQ-QDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVV 778
Query: 229 QKFLKY--QNAVHYIVEELLNSDQ-----------ILQVASDKYGNYVIQ 265
+K + Y +N I+ ++L D+ ++ + D++ NYVIQ
Sbjct: 779 EKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQ 828
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 63/126 (50%), Gaps = 12/126 (9%)
Query: 184 RHRSGNYVVQHVLNLEDPFLIDAICF---ALRGHYVDLSLTKCGSFVVQKFLKYQNAVHY 240
+ ++GN+V+Q + + I+ + F +L GH LS G V+Q+ L++ ++
Sbjct: 656 KDQNGNHVIQKAI---ETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQ 712
Query: 241 IVEELLNS--DQILQVASDKYGNYVIQTALVET--MRQDRLSVHQRLVTKLQQHLAALRV 296
E +LN D I + D+YGNYVIQ L + ++ + + Q ++ + ++
Sbjct: 713 --ESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSK 770
Query: 297 MKYGSN 302
K+ SN
Sbjct: 771 HKFASN 776
>sp|P39016|MPT5_YEAST Suppressor protein MPT5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MPT5 PE=1 SV=2
Length = 859
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 126/273 (46%), Gaps = 26/273 (9%)
Query: 3 GSQYLQEKL--SSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIIL 60
G ++LQ+KL S + + D ++ + F +L+ +G ++ K + Q L+I
Sbjct: 224 GCRFLQKKLETPSESNMVRDLMYEQIKPFFLDLILDPFGNYLVQKLCDYLTAEQKTLLIQ 283
Query: 61 KITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPL------LYHVMSALKRLFKFLMMTK 114
T +F + S++++G+ S++K+I V + ++++++ L+
Sbjct: 284 --TIYPNVFQI-SINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQEFTSIEQVVT-LINDL 339
Query: 115 PGSSVILKCLEPSYNHKNDFIYQAALE--HCLYLACHEQGCINLNNFIDNMKGSRRKQIL 172
G+ VI KC+ K FI A +E + + ++ H+ GC L + +QI
Sbjct: 340 NGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQKL---LSVCTLQQIF 396
Query: 173 HLISVNA----ASLSRHRSGNYVVQHVLNLE--DPFLIDAICFALRGHYVDLSLTKCGSF 226
ISV L + GNY++Q +L+++ D +L+ + L LS K S
Sbjct: 397 K-ISVKIVQFLPGLINDQFGNYIIQFLLDIKELDFYLLAELFNRLSNELCQLSCLKFSSN 455
Query: 227 VVQKFLK--YQNAVHYIVEELLNSDQILQVASD 257
VV+KF+K ++ +IV + Q VASD
Sbjct: 456 VVEKFIKKLFRIITGFIVNNNGGASQRTAVASD 488
>sp|Q9FGE7|PUM26_ARATH Pumilio homolog 26 OS=Arabidopsis thaliana GN=APUM26 PE=2 SV=1
Length = 187
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 169 KQILHLISVNAASLSRHR-SGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFV 227
IL I NA L+R+ G +V+ +N+ DP I L HYV+LS + GS +
Sbjct: 113 PDILRRIGNNALYLTRNPLRGICLVEKAINVRDPDCTVFIALKLHSHYVELSFEELGSNI 172
Query: 228 VQKFL 232
V+K L
Sbjct: 173 VEKLL 177
>sp|Q5HG21|ALR2_STAAC Alanine racemase 2 OS=Staphylococcus aureus (strain COL) GN=alr2
PE=3 SV=1
Length = 361
Score = 35.4 bits (80), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 69 FLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEPSY 128
F+ A +D F ++S+++ I++ +P +M+A+ ++F ++ + + L L Y
Sbjct: 45 FIHAGIDTFSTTSLREAIQIRQLAPDATIFLMNAV---YEFDLVREHQIHMTLPSLTYYY 101
Query: 129 NHKNDF 134
NHKND
Sbjct: 102 NHKNDL 107
>sp|Q9EZ08|ALR2_STAA8 Alanine racemase 2 OS=Staphylococcus aureus (strain NCTC 8325)
GN=alr2 PE=3 SV=2
Length = 361
Score = 35.4 bits (80), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 69 FLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEPSY 128
F+ A +D F ++S+++ I++ +P +M+A+ ++F ++ + + L L Y
Sbjct: 45 FIHAGIDTFSTTSLREAIQIRQLAPDATIFLMNAV---YEFDLVREHQIHMTLPSLTYYY 101
Query: 129 NHKNDF 134
NHKND
Sbjct: 102 NHKNDL 107
>sp|P63483|ALR2_STAAN Alanine racemase 2 OS=Staphylococcus aureus (strain N315) GN=alr2
PE=3 SV=1
Length = 361
Score = 35.4 bits (80), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 69 FLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEPSY 128
F+ A +D F ++S+++ I++ +P +M+A+ ++F ++ + + L L Y
Sbjct: 45 FIHAGIDTFSTTSLREAIQIRQLAPDATIFLMNAV---YEFDLVREHQIHMTLPSLTYYY 101
Query: 129 NHKND 133
NHKND
Sbjct: 102 NHKND 106
>sp|P63482|ALR2_STAAM Alanine racemase 2 OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=alr2 PE=1 SV=1
Length = 361
Score = 35.4 bits (80), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 69 FLLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEPSY 128
F+ A +D F ++S+++ I++ +P +M+A+ ++F ++ + + L L Y
Sbjct: 45 FIHAGIDTFSTTSLREAIQIRQLAPDATIFLMNAV---YEFDLVREHQIHMTLPSLTYYY 101
Query: 129 NHKND 133
NHKND
Sbjct: 102 NHKND 106
>sp|O61345|PEN_DROME Protein penguin OS=Drosophila melanogaster GN=pen PE=2 SV=1
Length = 737
Score = 35.0 bits (79), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 96 LYHVMSALKRLFKFLMMTKPGSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQG--- 152
L ++A L ++ TK GS + C S I + EH L +A HE G
Sbjct: 346 LEETVTAFAALVPHMLSTKEGSEAAVICFYKSTPKNRRAIIKNIKEHLLKIANHEHGHVF 405
Query: 153 CINLNNFIDNMKGSRRKQILHL 174
I+L N +D+ K +++ HL
Sbjct: 406 LISLLNALDDTKATKKAIYDHL 427
>sp|Q12221|PUF2_YEAST mRNA-binding protein PUF2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PUF2 PE=1 SV=1
Length = 1075
Score = 33.9 bits (76), Expect = 1.5, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 182 LSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVHYI 241
LS GN V+Q + + D + + + + K G++V QK +K N I
Sbjct: 584 LSSDYLGNTVIQKLFENSSNIIRDIMLRKCNKYLTSMGVHKNGTWVCQKIIKMANTPRQI 643
Query: 242 VEELLNS---DQILQVASDKYGNYVIQTAL 268
L+ S D + +D++GNYVIQ L
Sbjct: 644 --NLVTSGVSDYCTPLFNDQFGNYVIQGIL 671
>sp|Q58DK1|CPT1B_BOVIN Carnitine O-palmitoyltransferase 1, muscle isoform OS=Bos taurus
GN=CPT1B PE=2 SV=1
Length = 771
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 164 KGSRRKQILHLISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKC 223
K + + Q ++ +++ A + RH YVV L +E PFL + + R LS ++
Sbjct: 634 KAAEKHQNMYRLAMTGAGIDRHLFCLYVVSKYLGVESPFLAEVLSEPWR-----LSTSQI 688
Query: 224 GSFVVQKFLKYQNAVHYIVEELLNSDQILQVASDKYG-NYVI 264
F ++ F + H L VA D YG +Y+I
Sbjct: 689 AQFQIRMFDPNKYPKH-----LGAGGGFGPVADDGYGVSYMI 725
>sp|Q92347|NOP9_SCHPO Nucleolar protein 9 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nop9 PE=3 SV=1
Length = 655
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 188 GNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAVHYIVEELLN 247
G+ V++ + L I + AL GHYV+L T GS+ +K L + A+ + + +
Sbjct: 110 GSKVLEKLFPLSTSRQIKSFFSALNGHYVELIQTTFGSYAFEKLLSHMAAILNLETQGVT 169
Query: 248 SDQ 250
DQ
Sbjct: 170 EDQ 172
>sp|Q9LQ95|Y1164_ARATH BTB/POZ domain-containing protein At1g01640 OS=Arabidopsis thaliana
GN=At1g01640 PE=1 SV=1
Length = 207
Score = 32.3 bits (72), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 27/134 (20%)
Query: 85 LIKVVAQSPPLLYH--VMSALKRLFKFLM-----MTKPGSSVILKCLEPSYNHKN----- 132
L+K ++PP+ H V++A ++F+ ++ T P S+ L P +H
Sbjct: 27 LVKPGEEAPPIPTHKAVLAARSKVFRNMLDSDECKTSPEESITL----PDLSHDELKSLL 82
Query: 133 DFIYQAALE------HCLYLACHEQGCINL-----NNFIDNMKGSRRKQILHLISVNAAS 181
+F+Y L+ LYLA + L N+FI ++ IL L S+ +
Sbjct: 83 EFLYSGNLKAPYNQYRSLYLAADKYDISYLQDVCRNHFIASLSSRNVLDILELASIPCDT 142
Query: 182 LSRHRSGNYVVQHV 195
+ + + N++V+H+
Sbjct: 143 ILKDAAINHIVKHM 156
>sp|Q9C552|PUM23_ARATH Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM23 PE=2 SV=1
Length = 753
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 211 LRGHYVDLSLTKCGSFVVQKFLKYQNAV--HYIVEELLNSDQILQVASDKYGNYVIQ 265
LRGH+ +LSL GSF V+K N I ELL D + ++ K G Y+++
Sbjct: 565 LRGHFGELSLHTSGSFTVEKCFDACNLTLREAIASELL--DVKVDLSKTKQGPYLLR 619
>sp|Q54IX3|PKS26_DICDI Probable polyketide synthase 26 OS=Dictyostelium discoideum GN=pks26
PE=3 SV=1
Length = 2531
Score = 32.0 bits (71), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 158 NFIDNMKGSRRKQILHLISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVD 217
+FI + SR K L LI L ++ G ++ + L+ + + + C RG +D
Sbjct: 1984 DFITGIYSSRNKDYLKLIKRKLTELGSNKKGVDIILNTLSSSEHMVSNFKCLNHRGRIID 2043
Query: 218 LSLT 221
LS+T
Sbjct: 2044 LSIT 2047
>sp|Q9UU76|PUF6_SCHPO Pumilio homology domain family member 6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=puf6 PE=1 SV=1
Length = 642
Score = 31.6 bits (70), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 8/115 (6%)
Query: 162 NMKGSRRKQIL----HLISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVD 217
++K RK I+ LI N L + VVQ + + IC L G YVD
Sbjct: 145 SIKAEERKTIIAELFDLIRTNVKQLVFKHDMSRVVQTCVKFGSKQQRETICAELAGSYVD 204
Query: 218 LSLTKCGSFVVQKFLKYQNA--VHYIVEELLNSDQILQVASDKYGNYVIQTALVE 270
L + G ++ K KY I+ E+ + ++++ + YV++ A E
Sbjct: 205 LCKSPYGKYLAIKIFKYGTPKMKEVILGEMYGN--VVKMIRHREAAYVVEDAFRE 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,584,994
Number of Sequences: 539616
Number of extensions: 3820953
Number of successful extensions: 11530
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 11213
Number of HSP's gapped (non-prelim): 138
length of query: 309
length of database: 191,569,459
effective HSP length: 117
effective length of query: 192
effective length of database: 128,434,387
effective search space: 24659402304
effective search space used: 24659402304
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (28.1 bits)