Query 048245
Match_columns 309
No_of_seqs 144 out of 1434
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 13:16:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048245.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048245hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gvo_A Pumilio 2, pumilio homo 100.0 4.1E-65 1.4E-69 454.6 22.7 300 1-309 35-341 (351)
2 3bwt_A Protein PUF4; pumilio, 100.0 3.4E-63 1.2E-67 439.8 22.5 303 1-308 22-332 (333)
3 3k49_A MRNA-binding protein PU 100.0 9.6E-63 3.3E-67 442.1 21.9 299 1-308 40-358 (369)
4 3k62_A FEM-3 mRNA-binding fact 100.0 1.7E-61 5.8E-66 436.3 21.5 304 1-309 38-401 (412)
5 3v71_A PUF (pumilio/FBF) domai 100.0 4.6E-60 1.6E-64 424.4 22.7 304 1-309 29-380 (382)
6 3gvo_A Pumilio 2, pumilio homo 100.0 9.4E-47 3.2E-51 336.1 18.2 290 4-307 5-303 (351)
7 3k49_A MRNA-binding protein PU 100.0 4.7E-47 1.6E-51 340.3 14.5 294 3-307 4-320 (369)
8 3bwt_A Protein PUF4; pumilio, 100.0 7E-45 2.4E-49 322.3 21.8 274 21-307 6-291 (333)
9 3v71_A PUF (pumilio/FBF) domai 100.0 1.2E-43 4.1E-48 318.0 17.9 278 23-307 13-323 (382)
10 3k62_A FEM-3 mRNA-binding fact 100.0 1.4E-41 4.8E-46 306.5 23.0 273 27-307 28-343 (412)
11 2ilr_A Protein FACE, fanconi a 85.1 9.5 0.00033 31.4 10.4 166 12-195 45-225 (264)
12 3u0r_A Apoptosis inhibitor 5; 57.1 94 0.0032 28.1 10.4 36 199-234 233-268 (507)
13 2xes_A Protein PAT1 homolog 1; 44.1 26 0.00088 28.6 4.4 42 105-146 71-112 (248)
14 2fv2_A RCD1 required for cell 37.7 1.1E+02 0.0039 25.0 7.1 43 7-49 126-175 (268)
15 2di0_A Activating signal coint 31.4 40 0.0014 21.6 2.8 37 210-247 15-52 (71)
16 1of9_A Pore-forming peptide am 27.7 80 0.0027 20.2 4.0 51 5-55 13-70 (77)
17 2l60_A Peptide YY; GPCR ligand 26.8 89 0.0031 17.5 3.5 28 12-39 14-41 (41)
18 2jtt_C Calcyclin-binding prote 26.1 75 0.0026 17.2 2.9 26 188-213 8-33 (35)
19 2ilr_A Protein FACE, fanconi a 25.0 2.8E+02 0.0097 22.7 18.1 184 37-236 33-229 (264)
20 3b2a_A TON_1937, putative unch 24.4 2.9E+02 0.0098 22.5 7.3 59 154-212 55-121 (265)
21 3g2s_A C-terminal fragment of 22.0 2.4E+02 0.0082 20.7 10.7 61 154-221 70-131 (149)
22 3zyq_A Hepatocyte growth facto 20.9 1.6E+02 0.0056 23.3 5.4 55 155-221 68-123 (226)
No 1
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=4.1e-65 Score=454.60 Aligned_cols=300 Identities=23% Similarity=0.373 Sum_probs=286.8
Q ss_pred CchhHHHHHHhccCCHHHHHHHHHHHHhhHHHhccCcchhHHHHHHHhhcCHHHHHHHHHHHhcccchHHHhhccccCCH
Q 048245 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSS 80 (309)
Q Consensus 1 ~~gsr~lq~~l~~~~~e~~~~i~~el~~~~~~L~~~~~g~~vlq~li~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~gs~ 80 (309)
|+|||++|++++.+++++++.+|+++.|++.+||.|+|||||+|+++++++++++..+++.+. +++..++.|++|||
T Consensus 35 q~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~---g~~~~l~~~~~G~r 111 (351)
T 3gvo_A 35 QHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIR---GHVLPLALQMYGCR 111 (351)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHT---TCHHHHHTSTTHHH
T ss_pred CcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHH---hhHHHHhhCHHhHH
Confidence 689999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHhHhhcCCCchHHHHHHhccCCCcchHHHHHHHHHhHHHHhcCccccHHHHHHH
Q 048245 81 SVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFI 160 (309)
Q Consensus 81 vlq~ll~~~~~~~~~~~~i~~~l~~~~~~l~~~~~gs~vvq~~l~~~~~~~~~~l~~~l~~~~~~l~~~~~gs~vvq~~l 160 (309)
|+|++++.+ ++ ++...+.+++.+++..|++|++||||+|++++.++++.+..+++.+.+++..+++|+|||+|+|+++
T Consensus 112 vvQk~le~~-~~-~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~l 189 (351)
T 3gvo_A 112 VIQKALESI-SS-DQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRIL 189 (351)
T ss_dssp HHHHHHHHS-CH-HHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHH
T ss_pred HHHHHHHhC-CH-HHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHH
Confidence 999999999 54 4556666779999999999999999999999999999999999999999999999999999999999
Q ss_pred hccChHHHHHHHHHHHHhHHhhccCCChhHHHHHHhhcCChhhHHHHHHHHHHhHHHhccCcchhHHHHHHHhcCCcH--
Q 048245 161 DNMKGSRRKQILHLISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAV-- 238 (309)
Q Consensus 161 ~~~~~~~~~~l~~~l~~~~~~l~~d~~g~~viq~ll~~~~~~~~~~i~~~l~~~~~~l~~~~~gs~vve~~l~~~~~~-- 238 (309)
+.++++++..+++++.+++..|++|+|||||+|++|+.++|+.+..|++.+.+++.+||+|+|||+|+|+|++.+++.
T Consensus 190 e~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~~r 269 (351)
T 3gvo_A 190 EHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAER 269 (351)
T ss_dssp HHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHHHH
T ss_pred HHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhCc-----hHHHHhhcCcChhHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhhhcCCCccchhhhccC
Q 048245 239 HYIVEELLNS-----DQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRVMKYGSNKEIQKKK 309 (309)
Q Consensus 239 ~~i~~~l~~~-----~~l~~L~~d~~g~~Viq~~l~~~~~~~~~~~~~~l~~~l~~~~~~L~~~~~g~~v~~k~~~ 309 (309)
+.|+++++.. +.+..|++|+|||||||++|+.+++ ..|+.+++.|.|+++.|++++||++|+.|+.|
T Consensus 270 ~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~----~~r~~i~~~i~~~~~~L~~~~~g~~i~~kl~~ 341 (351)
T 3gvo_A 270 ALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEP----AQRKIIMHKIRPHITTLRKYTYGKHILAKLEK 341 (351)
T ss_dssp HHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCH----HHHHHHHHHHGGGHHHHTTSTTTHHHHHHHHH
T ss_pred HHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 7899999862 2699999999999999999999988 88999999999999999999999999998753
No 2
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=3.4e-63 Score=439.84 Aligned_cols=303 Identities=26% Similarity=0.389 Sum_probs=284.4
Q ss_pred CchhHHHHHHhccCCHHHHHHHHHHHHhhHHHhccCcchhHHHHHHHhhcCHHHHHHHHHHHhcccchHHHhhccccCCH
Q 048245 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSS 80 (309)
Q Consensus 1 ~~gsr~lq~~l~~~~~e~~~~i~~el~~~~~~L~~~~~g~~vlq~li~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~gs~ 80 (309)
|+|||++|++++.+++++++.+|+|+.|++.+||.|++||||+|+++++++++++..+++.+. +++..++.|++|||
T Consensus 22 q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~---~~~~~l~~~~~G~r 98 (333)
T 3bwt_A 22 QHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISS---PHFVEISLNPHGTR 98 (333)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHG---GGHHHHHHSTTHHH
T ss_pred cHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHHH---hHHHHHHhcccccH
Confidence 689999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHhHhhcCCCchHHHHHHhccCCCcchHHHHHHHHHhHHHHhcCccccHHHHHHH
Q 048245 81 SVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFI 160 (309)
Q Consensus 81 vlq~ll~~~~~~~~~~~~i~~~l~~~~~~l~~~~~gs~vvq~~l~~~~~~~~~~l~~~l~~~~~~l~~~~~gs~vvq~~l 160 (309)
|+|++++.+ +++++...+.+++.+++..|++|++||||+|++++.++++.+..+++.+.+++..++.|++||+|+|+++
T Consensus 99 viQ~~l~~~-~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~~~~l~~~~~Gs~Vvq~~l 177 (333)
T 3bwt_A 99 ALQKLIECI-KTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCL 177 (333)
T ss_dssp HHHHHHHHC-CSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHSHHHHHTSTTHHHHHHHHH
T ss_pred HHHHHHHhc-CcHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 999999999 8888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred hccChHHHHHHHHHHHHhHHhhccCCChhHHHHHHhhcCChh----hHHHHHHHHHHhHHHhccCcchhHHHHHHHhcCC
Q 048245 161 DNMKGSRRKQILHLISVNAASLSRHRSGNYVVQHVLNLEDPF----LIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQN 236 (309)
Q Consensus 161 ~~~~~~~~~~l~~~l~~~~~~l~~d~~g~~viq~ll~~~~~~----~~~~i~~~l~~~~~~l~~~~~gs~vve~~l~~~~ 236 (309)
++++++++..+++++.+++..|+.|+|||||+|++|+.++++ .++.|++.+.+++.+|++++|||+|+++||+.++
T Consensus 178 ~~~~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~~~~~Ls~~k~gs~Vvek~l~~~~ 257 (333)
T 3bwt_A 178 DHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNVIEKILKTAI 257 (333)
T ss_dssp HHCCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHTSHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhCCccccchhHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccc
Confidence 999999999999999999999999999999999999987664 3689999999999999999999999999999765
Q ss_pred cHHHHHHHHhC---chHHHHhhcCcChhHHHHHHHhhccCCCcHHHHHHHHHHHHHHH-HhhhcCCCccchhhhcc
Q 048245 237 AVHYIVEELLN---SDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHL-AALRVMKYGSNKEIQKK 308 (309)
Q Consensus 237 ~~~~i~~~l~~---~~~l~~L~~d~~g~~Viq~~l~~~~~~~~~~~~~~l~~~l~~~~-~~L~~~~~g~~v~~k~~ 308 (309)
..+.++.+++. ++++..|+.|+|||||||++|+.++++. ...++.++++|.|++ +.|++++||++||.||.
T Consensus 258 ~~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~l~~~~~~~-~~~~~~l~~~l~p~l~~~lr~~~~G~~i~~~l~ 332 (333)
T 3bwt_A 258 VSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHKQN-DYLYKRLSEIVAPLLVGPIRNTPHGKRIIGMLH 332 (333)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGCCGGGGGSHHHHHHHTTSC
T ss_pred hhHHHHHHHHhccCchHHHHHHcCChHHHHHHHHHHhccCcc-HHHHHHHHHHHHHhchhhhcCCCCHHHHHHHhc
Confidence 44678888875 3589999999999999999999987521 147899999999998 89999999999999873
No 3
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=9.6e-63 Score=442.15 Aligned_cols=299 Identities=20% Similarity=0.288 Sum_probs=280.2
Q ss_pred CchhHHHHHHhccCCHHHHHHHHHHHHhhHHHhccCcchhHHHHHHHhhcCHHHHHHHHHHHhcccchHHHhhccccCCH
Q 048245 1 EEGSQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSS 80 (309)
Q Consensus 1 ~~gsr~lq~~l~~~~~e~~~~i~~el~~~~~~L~~~~~g~~vlq~li~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~gs~ 80 (309)
|+|||++|++++++++++++.+|+|+.|++.+|+.|+|||||+|+++++++++++..+++.+. |++..++.|++||+
T Consensus 40 ~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~---g~~~~L~~~~~G~r 116 (369)
T 3k49_A 40 QHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFK---GNMKQLSLQMYACR 116 (369)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHT---TCHHHHHHSTTHHH
T ss_pred CcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHh---hhHHHHhcChhhHH
Confidence 689999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHhHhhcCCCchHHHHHHhccCCCcchHHHHHHHHHhHHHHhcCccccHHHHHHH
Q 048245 81 SVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFI 160 (309)
Q Consensus 81 vlq~ll~~~~~~~~~~~~i~~~l~~~~~~l~~~~~gs~vvq~~l~~~~~~~~~~l~~~l~~~~~~l~~~~~gs~vvq~~l 160 (309)
|+|++++.+ + +++...+..++.+++..|++|++||||+|++++.++++.+..+++.+.+++..++.|++||+|+|+++
T Consensus 117 VlQk~le~~-~-~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l 194 (369)
T 3k49_A 117 VIQKALEYI-D-SNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLL 194 (369)
T ss_dssp HHHHHHHHS-C-HHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHH
T ss_pred HHHHHHHhC-C-HHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHH
Confidence 999999998 4 56666666779999999999999999999999999999999999999999999999999999999999
Q ss_pred hccChHHHHHHHHHHHHhHHhhccCCChhHHHHHHhhcCChhh------HHHHHHHHHHhHHHhccCcchhHHHHHHHhc
Q 048245 161 DNMKGSRRKQILHLISVNAASLSRHRSGNYVVQHVLNLEDPFL------IDAICFALRGHYVDLSLTKCGSFVVQKFLKY 234 (309)
Q Consensus 161 ~~~~~~~~~~l~~~l~~~~~~l~~d~~g~~viq~ll~~~~~~~------~~~i~~~l~~~~~~l~~~~~gs~vve~~l~~ 234 (309)
+.++++++..+++++.+++..|+.|+|||||+|++|+.++++. +..|++.+.+++.+|+++||||+|+|+||+.
T Consensus 195 ~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~Ls~~k~gS~Vvek~l~~ 274 (369)
T 3k49_A 195 EFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVVEKSILY 274 (369)
T ss_dssp HHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhhhhHhHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHh
Confidence 9999999999999999999999999999999999999998764 5789999999999999999999999999999
Q ss_pred CCcH--HHHHHHHhCc-----------hHHHHhhcCcChhHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhhhc-CCCc
Q 048245 235 QNAV--HYIVEELLNS-----------DQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQHLAALRV-MKYG 300 (309)
Q Consensus 235 ~~~~--~~i~~~l~~~-----------~~l~~L~~d~~g~~Viq~~l~~~~~~~~~~~~~~l~~~l~~~~~~L~~-~~~g 300 (309)
+++. +.|+++++.. +.+..|++|+|||||||++|+.+++ ..++.+++.++|+++.|+. ++||
T Consensus 275 ~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~l~~~~~----~~~~~l~~~i~p~l~~L~~~~~~G 350 (369)
T 3k49_A 275 GSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSEG----EGKKLIVIAIRAYLDKLNKSNSLG 350 (369)
T ss_dssp SCHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHHHCC--C
T ss_pred CCHHHHHHHHHHHhccccccccccccccHHHHHHhCcchHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHhccccCc
Confidence 9887 8889998762 2588999999999999999999998 8999999999999999987 5999
Q ss_pred cchhhhcc
Q 048245 301 SNKEIQKK 308 (309)
Q Consensus 301 ~~v~~k~~ 308 (309)
++++..+.
T Consensus 351 ~~~~~~~e 358 (369)
T 3k49_A 351 NRHLASVE 358 (369)
T ss_dssp CCCCHHHH
T ss_pred chHHHHHH
Confidence 99987764
No 4
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=1.7e-61 Score=436.35 Aligned_cols=304 Identities=18% Similarity=0.257 Sum_probs=273.6
Q ss_pred CchhHHHHHHhccC-CHHHHHHHHHHHHhh---HHHhccCcchhHHHHHHHhhcCH-------HHHHHHHHHHhcccchH
Q 048245 1 EEGSQYLQEKLSSG-DSRILDKLFWVVSGF---TFELMSGQYGRFVFGKFIESCNE-------SQLALIILKITFQDQLF 69 (309)
Q Consensus 1 ~~gsr~lq~~l~~~-~~e~~~~i~~el~~~---~~~L~~~~~g~~vlq~li~~~~~-------~~~~~l~~~l~~~~~~~ 69 (309)
|+|||++|++++++ ++++++.||+|+.|+ +.+||.|+|||||+|++++++++ +++..++..+. |++
T Consensus 38 q~GsR~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~~~l~---g~v 114 (412)
T 3k62_A 38 KTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFIS---SQM 114 (412)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH---HTH
T ss_pred ChhHHHHHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhCCcccccccHHHHHHHHHHHH---HHH
Confidence 68999999999998 899999999999875 89999999999999999999999 99999999999 999
Q ss_pred HHhhccccCCHHHHHHHhhhcCChhHHHHHHHHH--HHHHhHhhcCCCchHHHHHHhccCCCcchHHHHHHHH--HhHHH
Q 048245 70 LLASVDKFGSSSVKKLIKVVAQSPPLLYHVMSAL--KRLFKFLMMTKPGSSVILKCLEPSYNHKNDFIYQAAL--EHCLY 145 (309)
Q Consensus 70 ~~l~~~~~gs~vlq~ll~~~~~~~~~~~~i~~~l--~~~~~~l~~~~~gs~vvq~~l~~~~~~~~~~l~~~l~--~~~~~ 145 (309)
..++.|++|||++|++++.+ + +++...+..++ .+++..|++|++||||+|++++.++++.+..+++.+. +++..
T Consensus 115 ~~L~~~~~GsrvvQk~le~~-~-~~~~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~~~~~~~~ 192 (412)
T 3k62_A 115 TDMCLDKFACRVIQSSLQNM-D-LSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQ 192 (412)
T ss_dssp HHHHHSTTHHHHHHHHHHHS-C-HHHHHHHHHTSCCSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHH
T ss_pred HHHHcChhhhHHHHHHHHhC-C-HHHHHHHHHHHhccccHHHHHhCccccHHHHHHHHhCCHHHHHHHHHHHhcchhHHH
Confidence 99999999999999999998 4 56667777778 6899999999999999999999999999999999998 59999
Q ss_pred HhcCccccHHHHHHHhccCh------------HHHH----HHHHHHHHhHHhhccCCChhHHHHHHhhcCChh-hHHHHH
Q 048245 146 LACHEQGCINLNNFIDNMKG------------SRRK----QILHLISVNAASLSRHRSGNYVVQHVLNLEDPF-LIDAIC 208 (309)
Q Consensus 146 l~~~~~gs~vvq~~l~~~~~------------~~~~----~l~~~l~~~~~~l~~d~~g~~viq~ll~~~~~~-~~~~i~ 208 (309)
+++|+|||+|+|++++++++ +++. .+++++.+++..|+.|+|||||+|++|+.+.+. .+..|+
T Consensus 193 la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~~~~L~~dq~GNyViQ~iL~~g~~~~~r~~ii 272 (412)
T 3k62_A 193 ICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECII 272 (412)
T ss_dssp HHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHSTTTHHHHHHHHHCGGGHHHHHHHH
T ss_pred HhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCchhHHHHHH
Confidence 99999999999999999873 3443 456778889999999999999999999998876 478888
Q ss_pred H-HHHHhHHHhccCcchhHHHHHHHhcCCcH--HHHHHHHhC---------chHHHHhhcCcChhHHHHHHHhhccCCC-
Q 048245 209 F-ALRGHYVDLSLTKCGSFVVQKFLKYQNAV--HYIVEELLN---------SDQILQVASDKYGNYVIQTALVETMRQD- 275 (309)
Q Consensus 209 ~-~l~~~~~~l~~~~~gs~vve~~l~~~~~~--~~i~~~l~~---------~~~l~~L~~d~~g~~Viq~~l~~~~~~~- 275 (309)
+ .+.+++++||++||||+|||+||+.+++. +.|+++++. .+.+..|++|+|||||||++|+.++++.
T Consensus 273 ~~~l~~~~~~LS~~KfgSnVVek~L~~~~~~~r~~ii~ei~~~~~~~~~~~~~~l~~L~~DqyGNYViQ~~L~~~~~~~~ 352 (412)
T 3k62_A 273 EKCLMRNLLSLSQEKFASHVVEKAFLHAPLELLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFGNYVVQCMLTICCDAVS 352 (412)
T ss_dssp HHHTTTCHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHHSSCCCTTTCCCHHHHHHHSTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccHhHHHHHHHHHhCCHHHHHHHHHHHHhhccCCccccchHHHHHhcCCchHHHHHHHHHHcccccc
Confidence 7 69999999999999999999999999887 778999874 2369999999999999999999996520
Q ss_pred ---------------cHHHHHHHHHHHHHHHHhhhcCCCccchhhhccC
Q 048245 276 ---------------RLSVHQRLVTKLQQHLAALRVMKYGSNKEIQKKK 309 (309)
Q Consensus 276 ---------------~~~~~~~l~~~l~~~~~~L~~~~~g~~v~~k~~~ 309 (309)
....++.|++.++|+...|+..+||++|+.+|.|
T Consensus 353 ~~r~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~L~~~~~Gk~i~~~l~~ 401 (412)
T 3k62_A 353 GRRQTKEGGYDHAISFQDWLKKLHSRVTKERHRLSRFSSGKKMIETLAN 401 (412)
T ss_dssp TSSCCEETTEETHHHHHHHHHHHHHHHHHTHHHHTTSHHHHHHHHHHHH
T ss_pred chhhccccchhhhhhhHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHH
Confidence 0124678999999999999999999999998753
No 5
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=4.6e-60 Score=424.44 Aligned_cols=304 Identities=17% Similarity=0.248 Sum_probs=269.7
Q ss_pred CchhHHHHHHhccCCHHH-HHHHHHHHH---hhHHHhccCcchhHHHHHHHhhcCHHHHHHHHHH-HhcccchHHHhhcc
Q 048245 1 EEGSQYLQEKLSSGDSRI-LDKLFWVVS---GFTFELMSGQYGRFVFGKFIESCNESQLALIILK-ITFQDQLFLLASVD 75 (309)
Q Consensus 1 ~~gsr~lq~~l~~~~~e~-~~~i~~el~---~~~~~L~~~~~g~~vlq~li~~~~~~~~~~l~~~-l~~~~~~~~~l~~~ 75 (309)
|+|||++|++++.+++++ ++.+|+++. |++.+||.|+||||++|+++++++++++..++.. +. +++..++.|
T Consensus 29 q~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~li~~~l~---g~v~~Ls~~ 105 (382)
T 3v71_A 29 PSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRELLRQMID---GGLLAMCKD 105 (382)
T ss_dssp HHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHHHHHHHHH---TCHHHHHTS
T ss_pred CcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhc---chHHHHHhC
Confidence 689999999999998654 789999986 7899999999999999999999999999999976 68 999999999
Q ss_pred ccCCHHHHHHHhhhcCChhHHHHHHHHHHH-HHhHhhcCCCchHHHHHHhccCCCcchHHHHHHHH--HhHHHHhcCccc
Q 048245 76 KFGSSSVKKLIKVVAQSPPLLYHVMSALKR-LFKFLMMTKPGSSVILKCLEPSYNHKNDFIYQAAL--EHCLYLACHEQG 152 (309)
Q Consensus 76 ~~gs~vlq~ll~~~~~~~~~~~~i~~~l~~-~~~~l~~~~~gs~vvq~~l~~~~~~~~~~l~~~l~--~~~~~l~~~~~g 152 (309)
++||||+|++++.+ +.++... +..++.+ ++..|++|++||||+|++++.++++.+..+++.+. +++..+++|+||
T Consensus 106 ~~G~rvvQk~ie~~-~~~~~~~-li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii~~~~~~~~~~~la~h~~G 183 (382)
T 3v71_A 106 KFACRVVQLALQKF-DHSNVFQ-LIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYG 183 (382)
T ss_dssp TTHHHHHHHHHHHS-CHHHHHH-HHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHHHHHHSTTHHHHHHHSTTH
T ss_pred ccchHHHHHHHHHC-CHHHHHH-HHHHhcccchHHHhcCcccccHHHHHHHHCCHHHHHHHHHHHhcccchHhHhcCchh
Confidence 99999999999999 5554444 5555887 89999999999999999999999999999999997 699999999999
Q ss_pred cHHHHHHHhccChHH-------H----HHHHHHHHHhHHhhccCCChhHHHHHHhhcCCh--hhHHHHHH-HHHHhHHHh
Q 048245 153 CINLNNFIDNMKGSR-------R----KQILHLISVNAASLSRHRSGNYVVQHVLNLEDP--FLIDAICF-ALRGHYVDL 218 (309)
Q Consensus 153 s~vvq~~l~~~~~~~-------~----~~l~~~l~~~~~~l~~d~~g~~viq~ll~~~~~--~~~~~i~~-~l~~~~~~l 218 (309)
|+|+|++++++++++ + ..++.++.+++..|++|+|||||||++|+.+++ ..+..|++ .+.+++++|
T Consensus 184 c~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~~ii~~~l~~~~~~L 263 (382)
T 3v71_A 184 CRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTIIDKCLLRNLLSM 263 (382)
T ss_dssp HHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHHHHHHHHHTTTTCHHHH
T ss_pred hHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999987542 2 246677888899999999999999999998764 46888997 599999999
Q ss_pred ccCcchhHHHHHHHhcCCcH--HHHHHHHhC---------chHHHHhhcCcChhHHHHHHHhhccCCC------------
Q 048245 219 SLTKCGSFVVQKFLKYQNAV--HYIVEELLN---------SDQILQVASDKYGNYVIQTALVETMRQD------------ 275 (309)
Q Consensus 219 ~~~~~gs~vve~~l~~~~~~--~~i~~~l~~---------~~~l~~L~~d~~g~~Viq~~l~~~~~~~------------ 275 (309)
|++||||+|+|+||+.+++. +.|+++++. ++.+..|++|+|||||||++|+.+++.-
T Consensus 264 s~~k~gS~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~~~~~~~~~~~~~~~~~~~ 343 (382)
T 3v71_A 264 SQDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISICTAALIGKEERELPPAI 343 (382)
T ss_dssp TTSTTHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHHHHHHHCC-----CCCTTT
T ss_pred hcCchHhHHHHHHHHhCCHHHHHHHHHHHHhhccccccccchHHHHHHCCCCccHHHHHHHHHcccccccchhcccchhH
Confidence 99999999999999999988 889999985 2479999999999999999999997510
Q ss_pred ---cHHHHHHHHHHHHHHHHhhhcCCCccchhhhccC
Q 048245 276 ---RLSVHQRLVTKLQQHLAALRVMKYGSNKEIQKKK 309 (309)
Q Consensus 276 ---~~~~~~~l~~~l~~~~~~L~~~~~g~~v~~k~~~ 309 (309)
....+++|.+.+.|++..|+.++||++|+++|-|
T Consensus 344 ~~~~~~~~~~l~~~i~~~~~~l~~~~~Gk~i~~~l~~ 380 (382)
T 3v71_A 344 LLLYSGWYEKMKQRVLQHASRLERFSSGKKIIDSVMR 380 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHh
Confidence 0124689999999999999999999999998854
No 6
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=9.4e-47 Score=336.14 Aligned_cols=290 Identities=18% Similarity=0.191 Sum_probs=269.9
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHhhHHHhccCcchhHHHHHHHhhcCHHHHHHHHHHHhcccchHHHhhccccCCHHHH
Q 048245 4 SQYLQEKLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVK 83 (309)
Q Consensus 4 sr~lq~~l~~~~~e~~~~i~~el~~~~~~L~~~~~g~~vlq~li~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~gs~vlq 83 (309)
|.+|+++-.+-. ....++++.|++.+++.|++||+++|++++.++++++..++..+. +++..|+.|+||++|+|
T Consensus 5 ~~l~e~~r~~~~---~~~~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~---~~~~~L~~d~~gn~vvQ 78 (351)
T 3gvo_A 5 SRLLEDFRNNRF---PNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEIL---QAAYQLMTDVFGNYVIQ 78 (351)
T ss_dssp CHHHHHHHTTCC---TTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHG---GGHHHHHTSTTHHHHHH
T ss_pred cHHHHHHhCCCC---CCcCHHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHH---HhHHHHHhChhhhHHHH
Confidence 445555444322 224577889999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhHhhcCCCchHHHHHHhccCCCcchHHHHHHHHHhHHHHhcCccccHHHHHHHhcc
Q 048245 84 KLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNM 163 (309)
Q Consensus 84 ~ll~~~~~~~~~~~~i~~~l~~~~~~l~~~~~gs~vvq~~l~~~~~~~~~~l~~~l~~~~~~l~~~~~gs~vvq~~l~~~ 163 (309)
++++.+ ++++...+.+.+.+++.+++.|++|++|+|++++..+++++..+++++.+++..++.|++|++|+|++++.+
T Consensus 79 klle~~--~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~ 156 (351)
T 3gvo_A 79 KFFEFG--SLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECV 156 (351)
T ss_dssp HHHHHC--CHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHS
T ss_pred HHHhhC--CHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhC
Confidence 999998 678888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhHHhhccCCChhHHHHHHhhcCChhhHHHHHHHHHHhHHHhccCcchhHHHHHHHhcCCcH--HHH
Q 048245 164 KGSRRKQILHLISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAV--HYI 241 (309)
Q Consensus 164 ~~~~~~~l~~~l~~~~~~l~~d~~g~~viq~ll~~~~~~~~~~i~~~l~~~~~~l~~~~~gs~vve~~l~~~~~~--~~i 241 (309)
+++.+..+++.+.+++..++.++||+.|+|++|+..+++.+..|++.+.+++..|+.|+||++|+|++|+.+++. +.|
T Consensus 157 ~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i 236 (351)
T 3gvo_A 157 QPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKI 236 (351)
T ss_dssp CGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999888 788
Q ss_pred HHHHhCchHHHHhhcCcChhHHHHHHHhhccCCCcHHHHHHHHHHHHH-------HHHhhhcCCCccchhhhc
Q 048245 242 VEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQ-------HLAALRVMKYGSNKEIQK 307 (309)
Q Consensus 242 ~~~l~~~~~l~~L~~d~~g~~Viq~~l~~~~~~~~~~~~~~l~~~l~~-------~~~~L~~~~~g~~v~~k~ 307 (309)
++.+.+ ++..|++|+||++|++++++.+++ ..++.|++++.+ .+..|..++||.+|+.++
T Consensus 237 ~~~l~~--~~~~Ls~~k~gs~Vvek~l~~~~~----~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~ 303 (351)
T 3gvo_A 237 VSEIRG--KVLALSQHKFASNVVEKCVTHASR----AERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKM 303 (351)
T ss_dssp HHTTTT--CHHHHHTSTTHHHHHHHHHHHSCH----HHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHH
T ss_pred HHHHHH--HHHHHhcCcHHHHHHHHHHHhCCH----HHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHH
Confidence 999888 999999999999999999999998 899999999985 789999999999999875
No 7
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=4.7e-47 Score=340.29 Aligned_cols=294 Identities=17% Similarity=0.188 Sum_probs=272.5
Q ss_pred hhHHHHHHhccC--CHHHHHHHHHHHHhhHHHhccCcchhHHHHHHHhhcCHHHHHHHHHHHhcccchHHHhhccccCCH
Q 048245 3 GSQYLQEKLSSG--DSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSS 80 (309)
Q Consensus 3 gsr~lq~~l~~~--~~e~~~~i~~el~~~~~~L~~~~~g~~vlq~li~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~gs~ 80 (309)
-|++|+++.... ++.++...++++.|++.+++.|++|++++|++++.++++++..++..+. +++..|+.|+||++
T Consensus 4 ~s~lle~~~~~~~~~~~~~~~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~---~~~~~L~~d~~gn~ 80 (369)
T 3k49_A 4 RSPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIR---DDAIELSNDVFGNY 80 (369)
T ss_dssp -CHHHHHHHTTCC------CCCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHG---GGHHHHHHSTTTHH
T ss_pred cchhHHHHhCCCCccccccceeHHHHHHHHHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHH---HHHHHHhhCccccc
Confidence 588899888876 3467888999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHhHhhcCCCchHHHHHHhccCCCcchHHHHHHHHHhHHHHhcCccccHHHHHHH
Q 048245 81 SVKKLIKVVAQSPPLLYHVMSALKRLFKFLMMTKPGSSVILKCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFI 160 (309)
Q Consensus 81 vlq~ll~~~~~~~~~~~~i~~~l~~~~~~l~~~~~gs~vvq~~l~~~~~~~~~~l~~~l~~~~~~l~~~~~gs~vvq~~l 160 (309)
|+|++++.+ ++++...+.+.+.+++..++.|++|++|+|++++.++++++..+++++.+++..++.|++|++|+|+++
T Consensus 81 vvQkll~~~--~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l 158 (369)
T 3k49_A 81 VIQKFFEFG--SKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAI 158 (369)
T ss_dssp HHHHHHHHC--CHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHH
T ss_pred HHHHHHHhC--CHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHH
Confidence 999999998 678888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred hccChHHHHHHHHHHHHhHHhhccCCChhHHHHHHhhcCChhhHHHHHHHHHHhHHHhccCcchhHHHHHHHhcCCcH--
Q 048245 161 DNMKGSRRKQILHLISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAV-- 238 (309)
Q Consensus 161 ~~~~~~~~~~l~~~l~~~~~~l~~d~~g~~viq~ll~~~~~~~~~~i~~~l~~~~~~l~~~~~gs~vve~~l~~~~~~-- 238 (309)
+.++++.+..+++.+.+++..++.++||++|+|++++.++++.+..|++.+.+++..|+.|+||++|+|++++.++++
T Consensus 159 ~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~ 238 (369)
T 3k49_A 159 ETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNK 238 (369)
T ss_dssp HHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ------HHHHHHHhCchHHHHhhcCcChhHHHHHHHhhccCCCcHHHHHHHHHHHHH-------------HHHhhhcCCC
Q 048245 239 ------HYIVEELLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQ-------------HLAALRVMKY 299 (309)
Q Consensus 239 ------~~i~~~l~~~~~l~~L~~d~~g~~Viq~~l~~~~~~~~~~~~~~l~~~l~~-------------~~~~L~~~~~ 299 (309)
+.|++.+.+ ++.+|++|+||++|++++|+.++. +.++.+++++.+ .+..|..++|
T Consensus 239 ~~~~~~~~i~~~l~~--~~~~Ls~~k~gS~Vvek~l~~~~~----~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~ 312 (369)
T 3k49_A 239 EMVDIKQEIIETVAN--NVVEYSKHKFASNVVEKSILYGSK----NQKDLIISKILPRDKNHALNLEDDSPMILMIKDQF 312 (369)
T ss_dssp HHHHHHHHHHHHHHT--THHHHHTSTTHHHHHHHHHHHSCH----HHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTT
T ss_pred hhHhHHHHHHHHHHH--HHHHHHhhhHhhHHHHHHHHhCCH----HHHHHHHHHHhccccccccccccccHHHHHHhCcc
Confidence 467888888 999999999999999999999988 899999998854 4678999999
Q ss_pred ccchhhhc
Q 048245 300 GSNKEIQK 307 (309)
Q Consensus 300 g~~v~~k~ 307 (309)
|.+|+.++
T Consensus 313 gNyViq~~ 320 (369)
T 3k49_A 313 ANYVIQKL 320 (369)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 99999874
No 8
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=7e-45 Score=322.27 Aligned_cols=274 Identities=18% Similarity=0.221 Sum_probs=252.9
Q ss_pred HHHHHHHhhHHHhccCcchhHHHHHHHhhcCHHHHHHHHHHHhcccchHHHhhccccCCHHHHHHHhhhcCChhHHHHHH
Q 048245 21 KLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHVM 100 (309)
Q Consensus 21 ~i~~el~~~~~~L~~~~~g~~vlq~li~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~gs~vlq~ll~~~~~~~~~~~~i~ 100 (309)
.+++++.|++.+++.|++|++++|++++.++++++..+++.+. +++..|+.|+||++|+|++++.+ ++++...+.
T Consensus 6 ~~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~---~~~~~L~~d~~gn~vvQkll~~~--~~~~~~~i~ 80 (333)
T 3bwt_A 6 AVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETK---DYTVELMTDSFGNYLIQKLLEEV--TTEQRIVLT 80 (333)
T ss_dssp CCGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHG---GGHHHHHTSTTHHHHHHHHHHHS--CHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHH---HHHHHHhcCcccHHHHHHHHhhC--CHHHHHHHH
Confidence 4578899999999999999999999999999999999999999 99999999999999999999998 567777788
Q ss_pred HHHHHHHhHhhcCCCchHHHHHHhccCCC-cchHHHHHHHHHhHHHHhcCccccHHHHHHHhccChHHHHHHHHHHHHhH
Q 048245 101 SALKRLFKFLMMTKPGSSVILKCLEPSYN-HKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNA 179 (309)
Q Consensus 101 ~~l~~~~~~l~~~~~gs~vvq~~l~~~~~-~~~~~l~~~l~~~~~~l~~~~~gs~vvq~~l~~~~~~~~~~l~~~l~~~~ 179 (309)
+.+.+++.+++.|++|++|+|++++.++. +++..+++++.+++..++.|++|++|+|++++.++++.+..+++.+.+++
T Consensus 81 ~~~~~~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~~ 160 (333)
T 3bwt_A 81 KISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSC 160 (333)
T ss_dssp HHHGGGHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHSH
T ss_pred HHHHhHHHHHHhcccccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999764 46778899999999999999999999999999999999999999999999
Q ss_pred HhhccCCChhHHHHHHhhcCChhhHHHHHHHHHHhHHHhccCcchhHHHHHHHhcCCcH------HHHHHHHhCchHHHH
Q 048245 180 ASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNAV------HYIVEELLNSDQILQ 253 (309)
Q Consensus 180 ~~l~~d~~g~~viq~ll~~~~~~~~~~i~~~l~~~~~~l~~~~~gs~vve~~l~~~~~~------~~i~~~l~~~~~l~~ 253 (309)
..++.++||++|+|++++.++++.++.|++.+.+++..|+.|+||++|+|++++.+++. +.|++.+.+ ++.+
T Consensus 161 ~~l~~~~~Gs~Vvq~~l~~~~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~--~~~~ 238 (333)
T 3bwt_A 161 IDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKP--RAIE 238 (333)
T ss_dssp HHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGG--GHHH
T ss_pred HHHhcCchhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhCCccccchhHHHHHHHHHH--HHHH
Confidence 99999999999999999999999999999999999999999999999999999987653 578888876 9999
Q ss_pred hhcCcChhHHHHHHHhhccCCCcHHHHHHHHHHHH-----HHHHhhhcCCCccchhhhc
Q 048245 254 VASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQ-----QHLAALRVMKYGSNKEIQK 307 (309)
Q Consensus 254 L~~d~~g~~Viq~~l~~~~~~~~~~~~~~l~~~l~-----~~~~~L~~~~~g~~v~~k~ 307 (309)
|+.++||++|++++++.++. ++.++.++. +++..|..++||.+|+.++
T Consensus 239 Ls~~k~gs~Vvek~l~~~~~------~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~ 291 (333)
T 3bwt_A 239 LSIHKFGSNVIEKILKTAIV------SEPMILEILNNGGETGIQSLLNDSYGNYVLQTA 291 (333)
T ss_dssp HHTSTTHHHHHHHHHTSHHH------HHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHH
T ss_pred HHcccHHHHHHHHHHcccch------hHHHHHHHHhccCchHHHHHHcCChHHHHHHHH
Confidence 99999999999999997543 456666654 6899999999999999875
No 9
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=1.2e-43 Score=318.02 Aligned_cols=278 Identities=15% Similarity=0.161 Sum_probs=246.8
Q ss_pred HHHH--HhhHHHhccCcchhHHHHHHHhhcCHH-HHHHHHHHHhcccchHHHhhccccCCHHHHHHHhhhcCChhHHHHH
Q 048245 23 FWVV--SGFTFELMSGQYGRFVFGKFIESCNES-QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAQSPPLLYHV 99 (309)
Q Consensus 23 ~~el--~~~~~~L~~~~~g~~vlq~li~~~~~~-~~~~l~~~l~~~~~~~~~l~~~~~gs~vlq~ll~~~~~~~~~~~~i 99 (309)
+.++ +|++.++|.|++||+++|+.++.++++ .+..+++.+.+..+++..|+.|+||++++|++++.+ +.++...++
T Consensus 13 L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~-~~~~~~~li 91 (382)
T 3v71_A 13 LEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELA-TPAEQRELL 91 (382)
T ss_dssp HHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTC-CHHHHHHHH
T ss_pred HHHHhhCCCEehhccCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhC-CHHHHHHHH
Confidence 5666 599999999999999999999998755 478889988644478899999999999999999999 544556666
Q ss_pred HHHHHHHHhHhhcCCCchHHHHHHhccCCCcchHHHHHHHHH-hHHHHhcCccccHHHHHHHhccChHHHHHHHHHHH--
Q 048245 100 MSALKRLFKFLMMTKPGSSVILKCLEPSYNHKNDFIYQAALE-HCLYLACHEQGCINLNNFIDNMKGSRRKQILHLIS-- 176 (309)
Q Consensus 100 ~~~l~~~~~~l~~~~~gs~vvq~~l~~~~~~~~~~l~~~l~~-~~~~l~~~~~gs~vvq~~l~~~~~~~~~~l~~~l~-- 176 (309)
...+.+++..++.|++|++|+|++++.++.+++..+++++.+ ++..++.|++|++|+|++++..+++.+..+++++.
T Consensus 92 ~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii~~~~~~ 171 (382)
T 3v71_A 92 RQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLSSG 171 (382)
T ss_dssp HHHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHHHHHHST
T ss_pred HHHhcchHHHHHhCccchHHHHHHHHHCCHHHHHHHHHHhcccchHHHhcCcccccHHHHHHHHCCHHHHHHHHHHHhcc
Confidence 665789999999999999999999999999899999999998 89999999999999999999999999999999987
Q ss_pred HhHHhhccCCChhHHHHHHhhcCChhh-----------HHHHHHHHHHhHHHhccCcchhHHHHHHHhcCCc--H--HHH
Q 048245 177 VNAASLSRHRSGNYVVQHVLNLEDPFL-----------IDAICFALRGHYVDLSLTKCGSFVVQKFLKYQNA--V--HYI 241 (309)
Q Consensus 177 ~~~~~l~~d~~g~~viq~ll~~~~~~~-----------~~~i~~~l~~~~~~l~~~~~gs~vve~~l~~~~~--~--~~i 241 (309)
+++..++.|+||++|+|++|+..++.. ...|++.+.+++..|+.|+||++|+|++|+.+++ . ..|
T Consensus 172 ~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~~i 251 (382)
T 3v71_A 172 DSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTI 251 (382)
T ss_dssp THHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHHHHHH
T ss_pred cchHhHhcCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCCcHHHHHHH
Confidence 699999999999999999999875432 2356778888999999999999999999999874 2 678
Q ss_pred HHH-HhCchHHHHhhcCcChhHHHHHHHhhccCCCcHHHHHHHHHHHHH-----------HHHhhhcCCCccchhhhc
Q 048245 242 VEE-LLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQ-----------HLAALRVMKYGSNKEIQK 307 (309)
Q Consensus 242 ~~~-l~~~~~l~~L~~d~~g~~Viq~~l~~~~~~~~~~~~~~l~~~l~~-----------~~~~L~~~~~g~~v~~k~ 307 (309)
+.+ +.+ ++..|++|+|||+||+++|..+++ ..|+.|+++|.+ .+..|..++||.+|+.|+
T Consensus 252 i~~~l~~--~~~~Ls~~k~gS~Vvek~l~~~~~----~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~ 323 (382)
T 3v71_A 252 IDKCLLR--NLLSMSQDKYASHVIEGAFLFAPP----ALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQM 323 (382)
T ss_dssp HHHTTTT--CHHHHTTSTTHHHHHHHHHHHCCH----HHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHH
T ss_pred HHHHHHH--HHHHHhcCchHhHHHHHHHHhCCH----HHHHHHHHHHHhhccccccccchHHHHHHCCCCccHHHHHH
Confidence 876 666 999999999999999999999998 899999999974 788999999999999875
No 10
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=1.4e-41 Score=306.47 Aligned_cols=273 Identities=13% Similarity=0.187 Sum_probs=245.4
Q ss_pred HhhHHHhccCcchhHHHHHHHhhc-CHHHHHHHHHHHhcccchHHHhhccccCCHHHHHHHhhhcCCh-------hHHHH
Q 048245 27 SGFTFELMSGQYGRFVFGKFIESC-NESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAQSP-------PLLYH 98 (309)
Q Consensus 27 ~~~~~~L~~~~~g~~vlq~li~~~-~~~~~~~l~~~l~~~~~~~~~l~~~~~gs~vlq~ll~~~~~~~-------~~~~~ 98 (309)
+|++.+++.|++|++++|+.++.+ +++++..+++.+.+..+.+..|+.|+||++++|++++.+ ++ ++...
T Consensus 28 ~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~--~~~~~~~~~~q~~~ 105 (412)
T 3k62_A 28 SGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGIS--LATNDDGYTKRQEK 105 (412)
T ss_dssp HTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHH--HHCCSTTHHHHHHH
T ss_pred CCCcHHHhcCChhHHHHHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhC--CcccccccHHHHHH
Confidence 699999999999999999999997 899999999999822224899999999999999999999 44 56667
Q ss_pred HHHHHHHHHhHhhcCCCchHHHHHHhccCCCcchHHHHHHH--HHhHHHHhcCccccHHHHHHHhccChHHHHHHHHHHH
Q 048245 99 VMSALKRLFKFLMMTKPGSSVILKCLEPSYNHKNDFIYQAA--LEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLIS 176 (309)
Q Consensus 99 i~~~l~~~~~~l~~~~~gs~vvq~~l~~~~~~~~~~l~~~l--~~~~~~l~~~~~gs~vvq~~l~~~~~~~~~~l~~~l~ 176 (309)
+.+.+.+++..++.|++|++|+|++++.++++++..+++++ .+++..++.|++|++|+|++++.++++.+..+++.+.
T Consensus 106 i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~ 185 (412)
T 3k62_A 106 LKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVA 185 (412)
T ss_dssp HHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSCCSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcChhhhHHHHHHHHhCCHHHHHHHHHHHhccccHHHHHhCccccHHHHHHHHhCCHHHHHHHHHHHh
Confidence 77779999999999999999999999999999999999999 6899999999999999999999999999999999988
Q ss_pred --HhHHhhccCCChhHHHHHHhhcCCh------------hhHH----HHHHHHHHhHHHhccCcchhHHHHHHHhcCCcH
Q 048245 177 --VNAASLSRHRSGNYVVQHVLNLEDP------------FLID----AICFALRGHYVDLSLTKCGSFVVQKFLKYQNAV 238 (309)
Q Consensus 177 --~~~~~l~~d~~g~~viq~ll~~~~~------------~~~~----~i~~~l~~~~~~l~~~~~gs~vve~~l~~~~~~ 238 (309)
+++..++.++||+.|+|++|+..++ +.+. .+++.+..++..|+.|+||++|+|.+|+.+.+.
T Consensus 186 ~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~~~~L~~dq~GNyViQ~iL~~g~~~ 265 (412)
T 3k62_A 186 TPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLA 265 (412)
T ss_dssp SHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHSTTTHHHHHHHHHCGGGH
T ss_pred cchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCch
Confidence 6999999999999999999998753 2343 456777788899999999999999999998865
Q ss_pred ---HHHHHH-HhCchHHHHhhcCcChhHHHHHHHhhccCCCcHHHHHHHHHHHHH-----------HHHhhhcCCCccch
Q 048245 239 ---HYIVEE-LLNSDQILQVASDKYGNYVIQTALVETMRQDRLSVHQRLVTKLQQ-----------HLAALRVMKYGSNK 303 (309)
Q Consensus 239 ---~~i~~~-l~~~~~l~~L~~d~~g~~Viq~~l~~~~~~~~~~~~~~l~~~l~~-----------~~~~L~~~~~g~~v 303 (309)
..|+.. +.+ ++.+|++|+||+.||+++++.+++ ..++.|+++|.. .+..|..++||..|
T Consensus 266 ~~r~~ii~~~l~~--~~~~LS~~KfgSnVVek~L~~~~~----~~r~~ii~ei~~~~~~~~~~~~~~l~~L~~DqyGNYV 339 (412)
T 3k62_A 266 VYRECIIEKCLMR--NLLSLSQEKFASHVVEKAFLHAPL----ELLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFGNYV 339 (412)
T ss_dssp HHHHHHHHHHTTT--CHHHHHTSTTHHHHHHHHHHHCCH----HHHHHHHHHHHHSSCCCTTTCCCHHHHHHHSTTHHHH
T ss_pred hHHHHHHHHHHHH--HHHHHhcccHhHHHHHHHHHhCCH----HHHHHHHHHHHhhccCCccccchHHHHHhcCCchHHH
Confidence 467764 666 999999999999999999999988 899999999985 48899999999999
Q ss_pred hhhc
Q 048245 304 EIQK 307 (309)
Q Consensus 304 ~~k~ 307 (309)
+.++
T Consensus 340 iQ~~ 343 (412)
T 3k62_A 340 VQCM 343 (412)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 11
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=85.11 E-value=9.5 Score=31.43 Aligned_cols=166 Identities=7% Similarity=0.028 Sum_probs=82.5
Q ss_pred ccCCHHHHHHHHHHHH-hhHHHhccCcchhHHHHHHHhhcC---HHHHHHHHH-HHhcccchHHHhhccccCCHHHHHHH
Q 048245 12 SSGDSRILDKLFWVVS-GFTFELMSGQYGRFVFGKFIESCN---ESQLALIIL-KITFQDQLFLLASVDKFGSSSVKKLI 86 (309)
Q Consensus 12 ~~~~~e~~~~i~~el~-~~~~~L~~~~~g~~vlq~li~~~~---~~~~~~l~~-~l~~~~~~~~~l~~~~~gs~vlq~ll 86 (309)
-.+++.+.+.+++++. +. +...... .+.+.++...+ -..-..+++ .+- +.+..+ ..-+||++...+
T Consensus 45 ~~~sp~q~e~lc~~L~l~~---lsd~~l~-~lc~~ll~ls~dlS~~~a~v~~~~l~L---Pkil~L--~~~ASR~L~sal 115 (264)
T 2ilr_A 45 HECSPSQMDLLCAQLQLPQ---LSDLGLL-RLCTWLLALSPDLSLSNATVLTRSLFL---GRILSL--TSSASRLLTTAL 115 (264)
T ss_dssp GGCCHHHHHHHHHHHTGGG---CCHHHHH-HHHHHHHHCSSCCCHHHHHHHHHHHHH---HHHHHC--SSCCCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhhcc---CCHHHHH-HHHHHHHcCCcchhhhhHHHHHHHHHH---HHHHhc--cCcchhHHHHHH
Confidence 3477888888888885 32 1111111 13355555432 333344443 345 566655 666788865544
Q ss_pred -hhhcCChhHHHHHHHHHHHHHhHhhcCCCchH---HHHHHhc--cCCCcchHHHHHHHHHhHHHHhcCccccHHHHHHH
Q 048245 87 -KVVAQSPPLLYHVMSALKRLFKFLMMTKPGSS---VILKCLE--PSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFI 160 (309)
Q Consensus 87 -~~~~~~~~~~~~i~~~l~~~~~~l~~~~~gs~---vvq~~l~--~~~~~~~~~l~~~l~~~~~~l~~~~~gs~vvq~~l 160 (309)
+.+ .......+...+.|-+. ....|++ ++.++++ .++++.+..++..+. ++.-+..-..|+|.++
T Consensus 116 ~~f~--k~~p~a~~~all~PLL~---~~~~g~~Q~eLi~rlik~e~l~p~~~~lll~~iL----~l~WtE~~~~Vlq~lL 186 (264)
T 2ilr_A 116 TSFA--AKYTYPVCSALLDPVLQ---APGTGPAQTELLCCLVKMESLEPDAQVLMLGQIL----ELPWKEETFLVLQSLL 186 (264)
T ss_dssp HHHH--HHSHHHHHHHHHHHHHH---STTCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHH----HSCCCHHHHHHHHHHH
T ss_pred HHHH--HhCcHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhccCCHHHHHHHHHHHH----hccchHHHHHHHHHHH
Confidence 444 22222222222333222 2233444 6777774 466666665555543 3333444456788888
Q ss_pred hcc---ChHHHHHHHHHHHHhHHhhccCC-ChhHHHHHH
Q 048245 161 DNM---KGSRRKQILHLISVNAASLSRHR-SGNYVVQHV 195 (309)
Q Consensus 161 ~~~---~~~~~~~l~~~l~~~~~~l~~d~-~g~~viq~l 195 (309)
... +.+....++..+.+....+.+|- ||+.++.-+
T Consensus 187 ~~k~~L~~~~i~~Lv~~L~~~a~~~skSlkFakLll~~i 225 (264)
T 2ilr_A 187 ERQVEMTPEKFSVLMEKLCKKGLAATTSMAYAKLMLTVM 225 (264)
T ss_dssp TTCCCCCHHHHHHHHHHHHC-----CCSHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHHhHHhhcccHHHHHHHHHH
Confidence 753 44556666666666666666653 444444333
No 12
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=57.14 E-value=94 Score=28.10 Aligned_cols=36 Identities=19% Similarity=0.116 Sum_probs=22.9
Q ss_pred CChhhHHHHHHHHHHhHHHhccCcchhHHHHHHHhc
Q 048245 199 EDPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKY 234 (309)
Q Consensus 199 ~~~~~~~~i~~~l~~~~~~l~~~~~gs~vve~~l~~ 234 (309)
.+++..++++.++...++-.+....++..+..+.+.
T Consensus 233 sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~k 268 (507)
T 3u0r_A 233 SDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQ 268 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHh
Confidence 356667777777777776666666665555554443
No 13
>2xes_A Protein PAT1 homolog 1; mRNA decapping, P-bodies, RNA binding protein; 2.10A {Homo sapiens} PDB: 2xer_A 2xeq_A
Probab=44.11 E-value=26 Score=28.63 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=32.4
Q ss_pred HHHhHhhcCCCchHHHHHHhccCCCcchHHHHHHHHHhHHHH
Q 048245 105 RLFKFLMMTKPGSSVILKCLEPSYNHKNDFIYQAALEHCLYL 146 (309)
Q Consensus 105 ~~~~~l~~~~~gs~vvq~~l~~~~~~~~~~l~~~l~~~~~~l 146 (309)
+.|..++.-+.|..++.+++...+++++..++..+..++..+
T Consensus 71 ~~Fi~~Lsv~KGKkLl~Rll~~L~~~q~~til~~I~~~L~~L 112 (248)
T 2xes_A 71 DHFVQIMCIRKGKRMVARILPFLSTEQAADILMTTARNLPFL 112 (248)
T ss_dssp HHHHHHHTSHHHHHHHHHHGGGSCHHHHHHHHHHHHHTHHHH
T ss_pred CceeeeeehHhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 346677777888888888888888888888888887776655
No 14
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=37.73 E-value=1.1e+02 Score=25.04 Aligned_cols=43 Identities=9% Similarity=0.265 Sum_probs=22.6
Q ss_pred HHHHhccCCHHHHHHH-HHHHHhhHHHhccC------cchhHHHHHHHhh
Q 048245 7 LQEKLSSGDSRILDKL-FWVVSGFTFELMSG------QYGRFVFGKFIES 49 (309)
Q Consensus 7 lq~~l~~~~~e~~~~i-~~el~~~~~~L~~~------~~g~~vlq~li~~ 49 (309)
+=.+++..++|....+ -.|+.|-++..|.. -.+.|++||++..
T Consensus 126 IgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~d 175 (268)
T 2fv2_A 126 IGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 175 (268)
T ss_dssp HHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhcc
Confidence 4456666666655543 23444554444332 1456667776653
No 15
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=31.42 E-value=40 Score=21.56 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=24.2
Q ss_pred HHHHhHHHhccCcchhHHHHHHHhcCCcH-HHHHHHHhC
Q 048245 210 ALRGHYVDLSLTKCGSFVVQKFLKYQNAV-HYIVEELLN 247 (309)
Q Consensus 210 ~l~~~~~~l~~~~~gs~vve~~l~~~~~~-~~i~~~l~~ 247 (309)
....++.++.-+ +|.-.+.+||+..+.. +.++..|+.
T Consensus 15 s~I~qV~DLfPd-LG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 15 SLISQVKDLLPD-LGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHCCS-SCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHccc-CCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 333444444433 7788888888887666 777777776
No 16
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4
Probab=27.68 E-value=80 Score=20.18 Aligned_cols=51 Identities=4% Similarity=-0.027 Sum_probs=32.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhhH-------HHhccCcchhHHHHHHHhhcCHHHH
Q 048245 5 QYLQEKLSSGDSRILDKLFWVVSGFT-------FELMSGQYGRFVFGKFIESCNESQL 55 (309)
Q Consensus 5 r~lq~~l~~~~~e~~~~i~~el~~~~-------~~L~~~~~g~~vlq~li~~~~~~~~ 55 (309)
+.++.+++..++++....++.+-..+ -.-..+.|+..+++.+.+..+++..
T Consensus 13 ~~ve~~l~~nt~~~I~~~l~~~C~~lp~~~~~~C~~~V~~y~~~iI~~l~~~~~P~~I 70 (77)
T 1of9_A 13 NTLENLLTTKGADKVKDYISSLCNKASGFIATLCTKVLDFGIDKLIQLIEDKVDANAI 70 (77)
T ss_dssp HHHHHHCSSSCSHHHHHHHHHHHTTCSSTTHHHHHHHHHHCHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 56777887666666655555554332 1223367888888888887776643
No 17
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=26.84 E-value=89 Score=17.47 Aligned_cols=28 Identities=7% Similarity=0.126 Sum_probs=20.4
Q ss_pred ccCCHHHHHHHHHHHHhhHHHhccCcch
Q 048245 12 SSGDSRILDKLFWVVSGFTFELMSGQYG 39 (309)
Q Consensus 12 ~~~~~e~~~~i~~el~~~~~~L~~~~~g 39 (309)
+++++|+..+.+..+...+.-+...+||
T Consensus 14 ~~aspEela~Y~~~Lr~YinlvTR~RyG 41 (41)
T 2l60_A 14 KKLSPEELNRYYASLRHYLNLVTRQRYX 41 (41)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTTCC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcccccC
Confidence 3567888888888888777776666665
No 18
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=26.11 E-value=75 Score=17.15 Aligned_cols=26 Identities=15% Similarity=-0.038 Sum_probs=19.3
Q ss_pred hhHHHHHHhhcCChhhHHHHHHHHHH
Q 048245 188 GNYVVQHVLNLEDPFLIDAICFALRG 213 (309)
Q Consensus 188 g~~viq~ll~~~~~~~~~~i~~~l~~ 213 (309)
-+.+++++-+.++++.++.|.+.+.+
T Consensus 8 l~~~fk~iY~~gddd~kram~KS~~e 33 (35)
T 2jtt_C 8 LMNVLKKIYEDGDDDMKRTINKAWVE 33 (35)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 35677788888888888888777653
No 19
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=25.03 E-value=2.8e+02 Score=22.65 Aligned_cols=184 Identities=13% Similarity=0.054 Sum_probs=106.7
Q ss_pred cch-hHHHHHHHhhcCHHHHHHHHHHHhcc---cchHHHhhccccCCHHHHHHHhhhcCC---hhHHHHHHHHHHHHHhH
Q 048245 37 QYG-RFVFGKFIESCNESQLALIILKITFQ---DQLFLLASVDKFGSSSVKKLIKVVAQS---PPLLYHVMSALKRLFKF 109 (309)
Q Consensus 37 ~~g-~~vlq~li~~~~~~~~~~l~~~l~~~---~~~~~~l~~~~~gs~vlq~ll~~~~~~---~~~~~~i~~~l~~~~~~ 109 (309)
..| ....-.++.-+++.+...+-+.+.-+ ++.+.. +.+.++... .. ..-...+...+.|.+..
T Consensus 33 ~~~~~~~~l~~L~~~sp~q~e~lc~~L~l~~lsd~~l~~---------lc~~ll~ls-~dlS~~~a~v~~~~l~LPkil~ 102 (264)
T 2ilr_A 33 LEDAPPVELQLLHECSPSQMDLLCAQLQLPQLSDLGLLR---------LCTWLLALS-PDLSLSNATVLTRSLFLGRILS 102 (264)
T ss_dssp ---CCCHHHHGGGGCCHHHHHHHHHHHTGGGCCHHHHHH---------HHHHHHHCS-SCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHhCCHHHHHHHHHHHhhccCCHHHHHH---------HHHHHHcCC-cchhhhhHHHHHHHHHHHHHHh
Confidence 344 34556666669999999998887632 222222 334555432 11 22234455557888888
Q ss_pred hhcCCCchHHHHHHhccCCCcchHHHHHHHH-HhHHHHhcCccccHHHHHHHh--ccChHHHHHHHHHHHHhHHhhccCC
Q 048245 110 LMMTKPGSSVILKCLEPSYNHKNDFIYQAAL-EHCLYLACHEQGCINLNNFID--NMKGSRRKQILHLISVNAASLSRHR 186 (309)
Q Consensus 110 l~~~~~gs~vvq~~l~~~~~~~~~~l~~~l~-~~~~~l~~~~~gs~vvq~~l~--~~~~~~~~~l~~~l~~~~~~l~~d~ 186 (309)
+ ..-++.++...+..+....-..+++.+. +-+..-..++.=+-++.++++ ...++.+..++..+. ++.=+.
T Consensus 103 L--~~~ASR~L~sal~~f~k~~p~a~~~all~PLL~~~~~g~~Q~eLi~rlik~e~l~p~~~~lll~~iL----~l~WtE 176 (264)
T 2ilr_A 103 L--TSSASRLLTTALTSFAAKYTYPVCSALLDPVLQAPGTGPAQTELLCCLVKMESLEPDAQVLMLGQIL----ELPWKE 176 (264)
T ss_dssp C--SSCCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHH----HSCCCH
T ss_pred c--cCcchhHHHHHHHHHHHhCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccCCHHHHHHHHHHHH----hccchH
Confidence 8 6677777666555544555556666654 444433333344558888885 356666666666664 455566
Q ss_pred ChhHHHHHHhhcC---ChhhHHHHHHHHHHhHHHhccCcchhHHHHHHHhcCC
Q 048245 187 SGNYVVQHVLNLE---DPFLIDAICFALRGHYVDLSLTKCGSFVVQKFLKYQN 236 (309)
Q Consensus 187 ~g~~viq~ll~~~---~~~~~~~i~~~l~~~~~~l~~~~~gs~vve~~l~~~~ 236 (309)
.---|+|.+++.. +++....++..+.+.-..++.+---+..+-.++....
T Consensus 177 ~~~~Vlq~lL~~k~~L~~~~i~~Lv~~L~~~a~~~skSlkFakLll~~itky~ 229 (264)
T 2ilr_A 177 ETFLVLQSLLERQVEMTPEKFSVLMEKLCKKGLAATTSMAYAKLMLTVMTKYQ 229 (264)
T ss_dssp HHHHHHHHHHTTCCCCCHHHHHHHHHHHHC-----CCSHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhHHhhcccHHHHHHHHHHHHhH
Confidence 6778899999965 4455666666666666666666655566666665553
No 20
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=24.40 E-value=2.9e+02 Score=22.50 Aligned_cols=59 Identities=7% Similarity=-0.055 Sum_probs=38.3
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHhHHhhccCCC------hhHHHHHHhhcCC--hhhHHHHHHHHH
Q 048245 154 INLNNFIDNMKGSRRKQILHLISVNAASLSRHRS------GNYVVQHVLNLED--PFLIDAICFALR 212 (309)
Q Consensus 154 ~vvq~~l~~~~~~~~~~l~~~l~~~~~~l~~d~~------g~~viq~ll~~~~--~~~~~~i~~~l~ 212 (309)
.++..+++..+...+...++++.+.+..+..+++ +-.++..+++..+ +++-..+.+.+.
T Consensus 55 ~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~ 121 (265)
T 3b2a_A 55 VALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLV 121 (265)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 6777778777777777777888888887777764 4566666676442 333444444433
No 21
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=21.99 E-value=2.4e+02 Score=20.71 Aligned_cols=61 Identities=8% Similarity=-0.028 Sum_probs=39.1
Q ss_pred HHHHHHHhccChHHHHHHHHH-HHHhHHhhccCCChhHHHHHHhhcCChhhHHHHHHHHHHhHHHhccC
Q 048245 154 INLNNFIDNMKGSRRKQILHL-ISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLT 221 (309)
Q Consensus 154 ~vvq~~l~~~~~~~~~~l~~~-l~~~~~~l~~d~~g~~viq~ll~~~~~~~~~~i~~~l~~~~~~l~~~ 221 (309)
.++..|+++|.......+.+. +...+..++.++|.. ...++.-+++|++.+..+-..+..+
T Consensus 70 ~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~-------~~~~~~Vk~kil~li~~W~~~f~~~ 131 (149)
T 3g2s_A 70 TVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLG-------SRTSEKVKNKILELLYSWTVGLPEE 131 (149)
T ss_dssp HHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTG-------GGSCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccC-------CCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 378888888887776666543 666677777776521 1234556777777777666555433
No 22
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=20.89 E-value=1.6e+02 Score=23.28 Aligned_cols=55 Identities=5% Similarity=0.070 Sum_probs=27.2
Q ss_pred HHHHHHhccChHHHHHHHHH-HHHhHHhhccCCChhHHHHHHhhcCChhhHHHHHHHHHHhHHHhccC
Q 048245 155 NLNNFIDNMKGSRRKQILHL-ISVNAASLSRHRSGNYVVQHVLNLEDPFLIDAICFALRGHYVDLSLT 221 (309)
Q Consensus 155 vvq~~l~~~~~~~~~~l~~~-l~~~~~~l~~d~~g~~viq~ll~~~~~~~~~~i~~~l~~~~~~l~~~ 221 (309)
++..+++++.......+.+. +.+.+..++. ...++.-++.|++.+..+-..+..+
T Consensus 68 LLe~~vkNcG~~f~~eias~~fl~~l~~l~~------------~~~~~~Vk~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 68 VMESVVKNCGQTVHDEVANKQTMEELKDLLK------------RQVEVNVRNKILYLIQAWAHAFRNE 123 (226)
T ss_dssp HHHHHHHHHCHHHHHHHSSHHHHHHHHHHHH------------HCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhcchHHHHhhccHHHHHHHHHHhc------------cCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 66666676665544443322 3333333321 1224455666666666665554433
Done!