BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048248
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 151/330 (45%), Gaps = 43/330 (13%)
Query: 8 LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
L A R G+T+ V+ N N L T+ G T LHIAAR GH V+ +L+ ++ +
Sbjct: 84 LHCAARIGHTNMVKLLLENNANPNLATTA-GHTPLHIAAREGHVETVLALLEKEASQACM 142
Query: 68 PNHKSETPMHVAARAGNFGAAQIFMR----PHGNGNNTGT------------FDDILRKR 111
K TP+HVAA+ G A++ + P+ G N T +L R
Sbjct: 143 -TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201
Query: 112 DEE-------GNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIK 164
G TPLH A ++ ++A ++++ N ++ QG +T LH A +
Sbjct: 202 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS---ANAESVQG---VTPLHLAA-Q 254
Query: 165 SQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQS 224
M +L +K+ N+ ++ PL A GH +A L + +V G +
Sbjct: 255 EGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI-KHGVMVDATTRMGYT 313
Query: 225 PLHLASQNGQLSILENLLHSYPDSIEFIDNKNR---NILHLAAQNGHADVVVFILKQPEV 281
PLH+AS G + +++ LL D ++ K + + LH AAQ GH D+V +LK
Sbjct: 314 PLHVASHYGNIKLVKFLLQHQAD----VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS 369
Query: 282 EDLINSSDVDGNTPLHLAAINNHFNIILVL 311
+ ++S DG TPL +A + ++ VL
Sbjct: 370 PNEVSS---DGTTPLAIAKRLGYISVTDVL 396
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 126/275 (45%), Gaps = 23/275 (8%)
Query: 39 DTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNG 98
+T LH+AAR GH + +L++++ V+ +TP+H AAR G+ ++ + + N
Sbjct: 48 ETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP 106
Query: 99 NNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLL 158
N T G+TPLH A R+ + +++K+ ++A T L
Sbjct: 107 NLATT----------AGHTPLHIAAREGHVETVLALLEKEA------SQACMTKKGFTPL 150
Query: 159 HSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQH 218
H A K V +A++L + N + PL A + I L S +
Sbjct: 151 HVAA-KYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSP 208
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
NG +PLH+A++ Q+ + +LL Y S + LHLAAQ GHA++V +L +
Sbjct: 209 AWNGYTPLHIAAKQNQVEVARSLL-QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK 267
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
+L N S G TPLHL A H + VL +
Sbjct: 268 QANGNLGNKS---GLTPLHLVAQEGHVPVADVLIK 299
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 28 GNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGA 87
G + T++ G T LH+A+ +G+ LV +L+HQ+D V+ +P+H AA+ G+
Sbjct: 301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDI 359
Query: 88 AQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKK 137
+ ++ + N + +G TPL A+ K G ++ T + K
Sbjct: 360 VTLLLKNGASPNEVSS----------DGTTPL--AIAKRLGYISVTDVLK 397
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 73/123 (59%), Gaps = 5/123 (4%)
Query: 189 RNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDS 248
R PL AA GH ++ +L E + V D NG++PLHLA++NG L +++ LL + D
Sbjct: 3 RTPLHLAARNGHLEV-VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60
Query: 249 IEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNII 308
+ D R LHLAA+NGH +VV +L E +N+ D +G TPLHLAA N H ++
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 309 LVL 311
+L
Sbjct: 118 KLL 120
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Query: 153 NNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDD 212
N T LH A V+ +LEA D +N +D+ R PL AA GH ++ +L E
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEV-VKLLLEAG 58
Query: 213 SLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVV 272
+ V D NG++PLHLA++NG L +++ LL + D + D R LHLAA+NGH +VV
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVV 117
Query: 273 VFILK 277
+L+
Sbjct: 118 KLLLE 122
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 58/91 (63%), Gaps = 4/91 (4%)
Query: 221 NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPE 280
NG++PLHLA++NG L +++ LL + D + D R LHLAA+NGH +VV +L E
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL---E 56
Query: 281 VEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
+N+ D +G TPLHLAA N H ++ +L
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 8/130 (6%)
Query: 115 GNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKIL 174
G TPLH A R ++ +++ + N K K G T LH A V+ +L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGR---TPLHLAARNGHLEVVKLLL 55
Query: 175 EAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQ 234
EA D +N +D+ R PL AA GH ++ +L E + V D NG++PLHLA++NG
Sbjct: 56 EAGAD-VNAKDKNGRTPLHLAARNGHLEV-VKLLLEAGADVNAKDKNGRTPLHLAARNGH 113
Query: 235 LSILENLLHS 244
L +++ LL +
Sbjct: 114 LEVVKLLLEA 123
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 67/167 (40%), Gaps = 51/167 (30%)
Query: 37 NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
NG T LH+AAR GH +V +L+ +D V+ + TP+H+AAR G+ ++ +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 97 NGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLT 156
+ N +D+ G TPLH A R
Sbjct: 60 DVN----------AKDKNGRTPLHLAAR-------------------------------- 77
Query: 157 LLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKI 203
V+ +LEA D +N +D+ R PL AA GH ++
Sbjct: 78 -------NGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEV 116
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 8 LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
L A R+G+ + V+ G + +NG T LH+AAR GH +V +L+ +D V+
Sbjct: 6 LHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNA 63
Query: 68 PNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVR 124
+ TP+H+AAR G+ ++ + + N +D+ G TPLH A R
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN----------AKDKNGRTPLHLAAR 110
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 58/91 (63%), Gaps = 4/91 (4%)
Query: 221 NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPE 280
NG++PLHLA++NG L +++ LL + D + D R LHLAA+NGH +VV +L E
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL---E 56
Query: 281 VEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
+N+ D +G TPLHLAA N H ++ +L
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 189 RNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDS 248
R PL AA GH ++ +L E + V D NG++PLHLA++NG L +++ LL + D
Sbjct: 3 RTPLHLAARNGHLEV-VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60
Query: 249 IEFIDNKNRNILHLAAQNGHADVVVFILK 277
+ D R LHLAA+NGH +VV +L+
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 153 NNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDD 212
N T LH A V+ +LEA D +N +D+ R PL AA GH ++ +L E
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEV-VKLLLEAG 58
Query: 213 SLVYQHDCNGQSPLHLASQNGQLSILENLLHS 244
+ V D NG++PLHLA++NG L +++ LL +
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 37 NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
NG T LH+AAR GH +V +L+ +D V+ + TP+H+AAR G+ ++ +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 97 NGNNTGTFDDILRKRDEEGNTPLHNAVR 124
+ N +D+ G TPLH A R
Sbjct: 60 DVN----------AKDKNGRTPLHLAAR 77
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 8 LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
L A R+G+ + V+ G + +NG T LH+AAR GH +V +L+ +D V+
Sbjct: 6 LHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNA 63
Query: 68 PNHKSETPMHVAARAGNFGAAQIFM 92
+ TP+H+AAR G+ ++ +
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLL 88
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
D G +PLHLA++ G L I+E LL Y + DN LHLAA NGH ++V +LK
Sbjct: 44 DWLGHTPLHLAAKTGHLEIVEVLL-KYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKH 102
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
+N+ D +G TPLHLAA + H I+ VL +
Sbjct: 103 GAD---VNAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 15/147 (10%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCN-----GQSPL 226
+IL A +N D PL AA GH +I L L Y D N G +PL
Sbjct: 31 RILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVL------LKYGADVNAWDNYGATPL 84
Query: 227 HLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLIN 286
HLA+ NG L I+E LL D + D + LHLAA +GH ++V +LK +N
Sbjct: 85 HLAADNGHLEIVEVLLKHGAD-VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD---VN 140
Query: 287 SSDVDGNTPLHLAAINNHFNIILVLAR 313
+ D G T ++ N + ++ +L +
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 12/121 (9%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + T G T LH+AA+ GH +V +LK+
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYG 70
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHN 121
+D+ + N+ + TP+H+AA G+ ++ ++ HG N +D EG TPLH
Sbjct: 71 ADVNAWDNYGA-TPLHLAADNGHLEIVEVLLK-HGADVNA---------KDYEGFTPLHL 119
Query: 122 A 122
A
Sbjct: 120 A 120
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 181 INVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILEN 240
+N D R PL YAA GH +I +L + V D +G++PLH A++ G I++
Sbjct: 30 VNASDSDGRTPLHYAAKEGHKEI-VKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKL 88
Query: 241 LLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAA 300
L+ D + D+ R LH AA+ GH ++V ++ + +N+SD DG TPL LA
Sbjct: 89 LISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD---VNTSDSDGRTPLDLAR 144
Query: 301 INNHFNIILVLAR 313
+ + I+ +L +
Sbjct: 145 EHGNEEIVKLLEK 157
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 210 EDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA 269
E+ + V D +G++PLH A++ G I++ L+ D + D+ R LH AA+ GH
Sbjct: 25 ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHK 83
Query: 270 DVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
++V ++ + +N+ D DG TPLH AA H I+ +L
Sbjct: 84 EIVKLLISKGAD---VNAKDSDGRTPLHYAAKEGHKEIVKLL 122
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLV 215
T LH A K + K+L +K +N +D R PL YAA GH +I +L + V
Sbjct: 39 TPLHYAA-KEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEI-VKLLISKGADV 96
Query: 216 YQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFI 275
D +G++PLH A++ G I++ L+ D + D+ R L LA ++G+ ++V +
Sbjct: 97 NAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEIVKLL 155
Query: 276 LKQ 278
KQ
Sbjct: 156 EKQ 158
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 12/136 (8%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + +L A +G D+V++ NG + + +G T LH AA+ GH+ +V ++
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIE-NGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKG 60
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHN 121
+D V+ + TP+H AA+ G+ ++ + + N +D +G TPLH
Sbjct: 61 AD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN----------AKDSDGRTPLHY 109
Query: 122 AVRKCDGKMAFTMIKK 137
A ++ ++ +I K
Sbjct: 110 AAKEGHKEIVKLLISK 125
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 229 ASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSS 288
A++NG +++L+ + D + D+ R LH AA+ GH ++V ++ + +N+
Sbjct: 11 AAENGNKDRVKDLIENGAD-VNASDSDGRTPLHYAAKEGHKEIVKLLISKGAD---VNAK 66
Query: 289 DVDGNTPLHLAAINNHFNIILVL 311
D DG TPLH AA H I+ +L
Sbjct: 67 DSDGRTPLHYAAKEGHKEIVKLL 89
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 21 REFARL---NGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMH 77
+E +L G + +G T LH AA+ GH+ +V ++ +D V+ + TP+
Sbjct: 83 KEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNTSDSDGRTPLD 141
Query: 78 VAARAGNFGAAQIFMRPHG 96
+A GN ++ + G
Sbjct: 142 LAREHGNEEIVKLLEKQGG 160
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 210 EDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA 269
E+ + V D +G++PLHLA++NG +++ LL D D+ + LHLAA+NGH
Sbjct: 25 ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADP-NAKDSDGKTPLHLAAENGHK 83
Query: 270 DVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
+VV +L Q N+ D DG TPLHLAA N H ++ +L
Sbjct: 84 EVVKLLLSQGADP---NAKDSDGKTPLHLAAENGHKEVVKLL 122
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 181 INVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILEN 240
+N D + PL AA GH ++ +L + D +G++PLHLA++NG +++
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEV-VKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKL 88
Query: 241 LLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAA 300
LL D D+ + LHLAA+NGH +VV +L Q N+SD DG TPL LA
Sbjct: 89 LLSQGADP-NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP---NTSDSDGRTPLDLAR 144
Query: 301 INNHFNIILVLAR 313
+ + ++ +L +
Sbjct: 145 EHGNEEVVKLLEK 157
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 229 ASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSS 288
A++NG +++LL + D + D+ + LHLAA+NGH +VV +L Q N+
Sbjct: 11 AAENGNKDRVKDLLENGAD-VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADP---NAK 66
Query: 289 DVDGNTPLHLAAINNHFNIILVL 311
D DG TPLHLAA N H ++ +L
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLL 89
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 18/143 (12%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + +L A +G D+V++ NG + + +G T LH+AA GH+ +V +L
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLE-NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQG 60
Query: 62 SDLVSVPNHK---SETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTP 118
+D PN K +TP+H+AA G+ ++ + + N +D +G TP
Sbjct: 61 AD----PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN----------AKDSDGKTP 106
Query: 119 LHNAVRKCDGKMAFTMIKKDPEP 141
LH A ++ ++ + +P
Sbjct: 107 LHLAAENGHKEVVKLLLSQGADP 129
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 17/86 (19%)
Query: 37 NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHK---SETPMHVAARAGNFGAAQIFMR 93
+G T LH+AA GH+ +V +L +D PN K +TP+H+AA G+ ++ +
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGAD----PNAKDSDGKTPLHLAAENGHKEVVKLLLS 124
Query: 94 PHGNGNNTGTFDDILRKRDEEGNTPL 119
+ N + D +G TPL
Sbjct: 125 QGADPNTS----------DSDGRTPL 140
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
D +G +PLHLA++ G L I+E LL + D + D LHLAA+ GH ++V +LK
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
+N+ D DG TPLHLAA H I+ VL +
Sbjct: 91 GAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 5/142 (3%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ 231
+IL A +N +D+ PL AA GH +I L + + V D +G +PLHLA++
Sbjct: 19 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAR 77
Query: 232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVD 291
G L I+E LL + D + D LHLAA+ GH ++V +LK +N+ D
Sbjct: 78 EGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAQDKF 133
Query: 292 GNTPLHLAAINNHFNIILVLAR 313
G TP LA H +I VL +
Sbjct: 134 GKTPFDLAIREGHEDIAEVLQK 155
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 13/151 (8%)
Query: 7 KLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVS 66
KL A R G D+VR NG + ++G T LH+AAR GH +V +LK +D V+
Sbjct: 5 KLLEAARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VN 62
Query: 67 VPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKC 126
+ TP+H+AAR G+ ++ ++ + N +D++G TPLH A R+
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN----------AKDKDGYTPLHLAAREG 112
Query: 127 DGKMAFTMIKKDPEPIRYNNKAKQGPNNLTL 157
++ ++K + + +K + P +L +
Sbjct: 113 HLEIVEVLLKAGAD-VNAQDKFGKTPFDLAI 142
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 145 NNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIA 204
N K K G T LH A + ++ +L+A D +N +D+ PL AA GH +I
Sbjct: 29 NAKDKDG---YTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIV 84
Query: 205 CRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAA 264
L + + V D +G +PLHLA++ G L I+E LL + D + D + LA
Sbjct: 85 EVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTPFDLAI 142
Query: 265 QNGHADVVVFILK 277
+ GH D+ + K
Sbjct: 143 REGHEDIAEVLQK 155
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 8 LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
L A R G+ + V + G + ++G T LH+AAR GH +V +LK +D V+
Sbjct: 39 LHLAAREGHLEIVEVLLK-AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNA 96
Query: 68 PNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRK 125
+ TP+H+AAR G+ ++ ++ + N F G TP A+R+
Sbjct: 97 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF----------GKTPFDLAIRE 144
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 8 LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
L A R G+ + V + G + ++G T LH+AAR GH +V +LK +D V+
Sbjct: 72 LHLAAREGHLEIVEVLLK-AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNA 129
Query: 68 PNHKSETPMHVAARAGNFGAAQIFMR 93
+ +TP +A R G+ A++ +
Sbjct: 130 QDKFGKTPFDLAIREGHEDIAEVLQK 155
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 61/100 (61%), Gaps = 4/100 (4%)
Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
V D +G +PLHLA+ NG L I+E LL + D + +D+ L LAA GH ++V
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEV 98
Query: 275 ILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN 314
+LK +N++D++G+TPLHLAA+ H I+ VL +N
Sbjct: 99 LLKNGAD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + +G T LH+AA GH +V +LK+
Sbjct: 12 SDLGKKLLEAARAGRDDEVR-ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHN 121
+D V+ +H TP+ +AA G+ ++ ++ NG + + D EG+TPLH
Sbjct: 71 AD-VNAVDHAGMTPLRLAALFGHLEIVEVLLK---NGAD-------VNANDMEGHTPLHL 119
Query: 122 A 122
A
Sbjct: 120 A 120
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Query: 152 PNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDED 211
+ T LH A ++ +L+ D +N D PLR AA GH +I L ++
Sbjct: 45 ASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLL-KN 102
Query: 212 DSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADV 271
+ V +D G +PLHLA+ G L I+E LL + D + D + ++ NG+ D+
Sbjct: 103 GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDL 161
Query: 272 VVFILK 277
+ K
Sbjct: 162 AEILQK 167
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ 231
+IL A +N D PL AA GH +I L ++ + V D G +PL LA+
Sbjct: 31 RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL-KNGADVNAVDHAGMTPLRLAAL 89
Query: 232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVD 291
G L I+E LL + D + D + LHLAA GH ++V +LK +N+ D
Sbjct: 90 FGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD---VNAQDKF 145
Query: 292 GNTPLHLAAINNHFNIILVLAR 313
G T ++ N + ++ +L +
Sbjct: 146 GKTAFDISIDNGNEDLAEILQK 167
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 19 KVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHV 78
++ E NG + G T L +AA FGH +V +LK+ +D V+ + + TP+H+
Sbjct: 61 EIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHL 119
Query: 79 AARAGNFGAAQIFMR 93
AA G+ ++ ++
Sbjct: 120 AAMFGHLEIVEVLLK 134
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 2 STVDHKLFRALR----HGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEI 57
+ VDH LR G+ + V + NG + G T LH+AA FGH +V +
Sbjct: 74 NAVDHAGMTPLRLAALFGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132
Query: 58 LKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
LK+ +D V+ + +T ++ GN A+I +
Sbjct: 133 LKNGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 5/133 (3%)
Query: 181 INVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILEN 240
+N D R PL +AA GH ++ +L + V D +G++PLH A++NG +++
Sbjct: 30 VNASDSDGRTPLHHAAENGHKEV-VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKL 88
Query: 241 LLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAA 300
L+ D + D+ R LH AA+NGH +VV ++ + +N+SD DG TPL LA
Sbjct: 89 LISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNTSDSDGRTPLDLAR 144
Query: 301 INNHFNIILVLAR 313
+ + ++ +L +
Sbjct: 145 EHGNEEVVKLLEK 157
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
Query: 210 EDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA 269
E+ + V D +G++PLH A++NG +++ L+ D + D+ R LH AA+NGH
Sbjct: 25 ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHK 83
Query: 270 DVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
+VV ++ + +N+ D DG TPLH AA N H ++ +L
Sbjct: 84 EVVKLLISKGAD---VNAKDSDGRTPLHHAAENGHKEVVKLL 122
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLV 215
T LH A V+ K+L +K +N +D R PL +AA GH ++ +L + V
Sbjct: 39 TPLHHAAENGHKEVV-KLLISKGADVNAKDSDGRTPLHHAAENGHKEV-VKLLISKGADV 96
Query: 216 YQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFI 275
D +G++PLH A++NG +++ L+ D + D+ R L LA ++G+ +VV +
Sbjct: 97 NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEVVKLL 155
Query: 276 LKQ 278
KQ
Sbjct: 156 EKQ 158
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 229 ASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSS 288
A++NG +++L+ + D + D+ R LH AA+NGH +VV ++ + +N+
Sbjct: 11 AAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNAK 66
Query: 289 DVDGNTPLHLAAINNHFNIILVL 311
D DG TPLH AA N H ++ +L
Sbjct: 67 DSDGRTPLHHAAENGHKEVVKLL 89
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 12/136 (8%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + +L A +G D+V++ NG + + +G T LH AA GH+ +V ++
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIE-NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG 60
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHN 121
+D V+ + TP+H AA G+ ++ + + N +D +G TPLH+
Sbjct: 61 AD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN----------AKDSDGRTPLHH 109
Query: 122 AVRKCDGKMAFTMIKK 137
A ++ +I K
Sbjct: 110 AAENGHKEVVKLLISK 125
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 12 LRHGYTDKVREFARL---NGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVP 68
L H + +E +L G + +G T LH AA GH+ +V ++ +D V+
Sbjct: 74 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTS 132
Query: 69 NHKSETPMHVAARAGNFGAAQIFMRPHG 96
+ TP+ +A GN ++ + G
Sbjct: 133 DSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
V D +G +PLHLA++ G L I+E LL + D + D LHLAA+ GH ++V
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEV 98
Query: 275 ILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
+LK +N+ D DG TPLHLAA H I+ VL +
Sbjct: 99 LLKAGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 12/124 (9%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + ++G T LH+AAR GH +V +LK
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 70
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHN 121
+D V+ + TP+H+AAR G+ ++ ++ + N +D++G TPLH
Sbjct: 71 AD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN----------AKDKDGYTPLHL 119
Query: 122 AVRK 125
A R+
Sbjct: 120 AARE 123
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 5/140 (3%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ 231
+IL A +N +D+ PL AA GH +I L + + V D +G +PLHLA++
Sbjct: 31 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAR 89
Query: 232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVD 291
G L I+E LL + D + D LHLAA+ GH ++V +LK +N+ D
Sbjct: 90 EGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAQDKF 145
Query: 292 GNTPLHLAAINNHFNIILVL 311
G T ++ N + ++ +L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 6/131 (4%)
Query: 145 NNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIA 204
N K K G T LH A + ++ +L+A D +N +D+ PL AA GH +I
Sbjct: 41 NAKDKDG---YTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIV 96
Query: 205 CRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAA 264
L + + V D +G +PLHLA++ G L I+E LL + D + D + ++
Sbjct: 97 EVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTAFDISI 154
Query: 265 QNGHADVVVFI 275
NG+ D+ +
Sbjct: 155 DNGNEDLAEIL 165
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 8 LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
L A R G+ + V + G + ++G T LH+AAR GH +V +LK +D V+
Sbjct: 51 LHLAAREGHLEIVEVLLK-AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNA 108
Query: 68 PNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTF 104
+ TP+H+AAR G+ ++ ++ + N F
Sbjct: 109 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 145
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 8 LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
L A R G+ + V + G + ++G T LH+AAR GH +V +LK +D V+
Sbjct: 84 LHLAAREGHLEIVEVLLK-AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNA 141
Query: 68 PNHKSETPMHVAARAGNFGAAQIF 91
+ +T ++ GN A+I
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
V D +G +PLHLA++ G L I+E LL + D + D LHLAA+ GH ++V
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEV 86
Query: 275 ILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
+LK +N+ D DG TPLHLAA H I+ VL +
Sbjct: 87 LLKAGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ 231
+IL A +N +D+ PL AA GH +I L + + V D +G +PLHLA++
Sbjct: 19 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAR 77
Query: 232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVD 291
G L I+E LL + D + D LHLAA+ GH ++V +LK +N+ D
Sbjct: 78 EGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAQDKF 133
Query: 292 GNTPLHLAAINNHFNIILVLAR 313
G TP LA N + +I VL +
Sbjct: 134 GKTPFDLAIDNGNEDIAEVLQK 155
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 13/151 (8%)
Query: 7 KLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVS 66
KL A R G D+VR NG + ++G T LH+AAR GH +V +LK +D V+
Sbjct: 5 KLLEAARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VN 62
Query: 67 VPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKC 126
+ TP+H+AAR G+ ++ ++ + N +D++G TPLH A R+
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN----------AKDKDGYTPLHLAAREG 112
Query: 127 DGKMAFTMIKKDPEPIRYNNKAKQGPNNLTL 157
++ ++K + + +K + P +L +
Sbjct: 113 HLEIVEVLLKAGAD-VNAQDKFGKTPFDLAI 142
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 145 NNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIA 204
N K K G T LH A + ++ +L+A D +N +D+ PL AA GH +I
Sbjct: 29 NAKDKDG---YTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIV 84
Query: 205 CRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAA 264
L + + V D +G +PLHLA++ G L I+E LL + D + D + LA
Sbjct: 85 EVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTPFDLAI 142
Query: 265 QNGHADVVVFILK 277
NG+ D+ + K
Sbjct: 143 DNGNEDIAEVLQK 155
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 8 LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
L A R G+ + V + G + ++G T LH+AAR GH +V +LK +D V+
Sbjct: 72 LHLAAREGHLEIVEVLLK-AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNA 129
Query: 68 PNHKSETPMHVAARAGNFGAAQIFMR 93
+ +TP +A GN A++ +
Sbjct: 130 QDKFGKTPFDLAIDNGNEDIAEVLQK 155
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 5/132 (3%)
Query: 182 NVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENL 241
N D R PL YAA GH +I +L + D +G++PLH A++NG I++ L
Sbjct: 31 NASDSDGRTPLHYAAENGHKEI-VKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 89
Query: 242 LHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAI 301
L D D+ R LH AA+NGH ++V +L + N+SD DG TPL LA
Sbjct: 90 LSKGADP-NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP---NTSDSDGRTPLDLARE 145
Query: 302 NNHFNIILVLAR 313
+ + I+ +L +
Sbjct: 146 HGNEEIVKLLEK 157
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 229 ASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSS 288
A++NG +++LL + D D+ R LH AA+NGH ++V +L + N+
Sbjct: 11 AAENGNKDRVKDLLENGADP-NASDSDGRTPLHYAAENGHKEIVKLLLSKGADP---NAK 66
Query: 289 DVDGNTPLHLAAINNHFNIILVL 311
D DG TPLH AA N H I+ +L
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLL 89
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLV 215
T LH A ++ K+L +K N +D R PL YAA GH +I +L +
Sbjct: 39 TPLHYAAENGHKEIV-KLLLSKGADPNAKDSDGRTPLHYAAENGHKEI-VKLLLSKGADP 96
Query: 216 YQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFI 275
D +G++PLH A++NG I++ LL D D+ R L LA ++G+ ++V +
Sbjct: 97 NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP-NTSDSDGRTPLDLAREHGNEEIVKLL 155
Query: 276 LKQ 278
KQ
Sbjct: 156 EKQ 158
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 18/143 (12%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + +L A +G D+V++ NG + +G T LH AA GH+ +V +L
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLE-NGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKG 60
Query: 62 SDLVSVPNHK---SETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTP 118
+D PN K TP+H AA G+ ++ + + N +D +G TP
Sbjct: 61 AD----PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN----------AKDSDGRTP 106
Query: 119 LHNAVRKCDGKMAFTMIKKDPEP 141
LH A ++ ++ K +P
Sbjct: 107 LHYAAENGHKEIVKLLLSKGADP 129
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
D NG +PLHLA+ NGQL I+E LL + D + D+ LHLAA +GH ++V +LK
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGAD-VNASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
+N+ D G TPLHLAA++ I+ VL +
Sbjct: 95 GAD---VNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ 231
+IL A +N D+ PL AAA G +I L ++ + V D G +PLHLA+
Sbjct: 23 RILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLL-KNGADVNASDSAGITPLHLAAY 81
Query: 232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVD 291
+G L I+E LL D + D LHLAA +G ++V +LK + +DV+
Sbjct: 82 DGHLEIVEVLLKHGAD-VNAYDRAGWTPLHLAALSGQLEIVEVLLK--------HGADVN 132
Query: 292 GNTPLHLAAINNHFN 306
L L A + N
Sbjct: 133 AQDALGLTAFDISIN 147
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Query: 7 KLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVS 66
KL A G D+VR NG + T NG T LH+AA G +V +LK+ +D V+
Sbjct: 9 KLLEAAAAGQDDEVR-ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD-VN 66
Query: 67 VPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKC 126
+ TP+H+AA G+ ++ ++ HG N D G TPLH A
Sbjct: 67 ASDSAGITPLHLAAYDGHLEIVEVLLK-HGADVNA---------YDRAGWTPLHLAALSG 116
Query: 127 DGKMAFTMIK 136
++ ++K
Sbjct: 117 QLEIVEVLLK 126
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 153 NNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDD 212
N LT LH A Q ++ +L+ D +N D PL AA GH +I L +
Sbjct: 38 NGLTPLHLAAANGQLEIVEVLLKNGAD-VNASDSAGITPLHLAAYDGHLEIVEVLL-KHG 95
Query: 213 SLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPD 247
+ V +D G +PLHLA+ +GQL I+E LL D
Sbjct: 96 ADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD 130
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 19 KVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHV 78
++ E NG + + G T LH+AA GH +V +LKH +D V+ + TP+H+
Sbjct: 53 EIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGAD-VNAYDRAGWTPLHL 111
Query: 79 AARAGNFGAAQIFMRPHG 96
AA +G ++ ++ HG
Sbjct: 112 AALSGQLEIVEVLLK-HG 128
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 285 INSSDVDGNTPLHLAAINNHFNIILVLARN 314
+N++D +G TPLHLAA N I+ VL +N
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKN 61
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
D +G +PLHLA+ G L I+E LL D + ID LHLAA GH ++V +LK
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIMGSTPLHLAALIGHLEIVEVLLKH 102
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
+N+ D G+TPLHLAAI H I+ VL +
Sbjct: 103 GAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + T +G T LH+AA +GH +V +LKH
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHG 70
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHN 121
+D V+ + TP+H+AA G+ ++ ++ + N T+ G+TPLH
Sbjct: 71 AD-VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW----------GDTPLHL 119
Query: 122 A 122
A
Sbjct: 120 A 120
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 5/142 (3%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ 231
+IL A +N D PL AA GH +I L + + V D G +PLHLA+
Sbjct: 31 RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLL-KHGADVNAIDIMGSTPLHLAAL 89
Query: 232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVD 291
G L I+E LL D + +D LHLAA GH ++V +LK +N+ D
Sbjct: 90 IGHLEIVEVLLKHGAD-VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD---VNAQDKF 145
Query: 292 GNTPLHLAAINNHFNIILVLAR 313
G T ++ N + ++ +L +
Sbjct: 146 GKTAFDISIDNGNEDLAEILQK 167
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 38 GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
GDT LH+AA GH +V +LKH +D V+ + +T ++ GN A+I +
Sbjct: 113 GDTPLHLAAIMGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
D +G +PLHLA+ G L I+E LL D + ID LHLAA GH ++V +LK
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIXGSTPLHLAALIGHLEIVEVLLKH 102
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
+N+ D G+TPLHLAAI H I+ VL +
Sbjct: 103 GAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + T +G T LH+AA +GH +V +LKH
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHG 70
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHN 121
+D V+ + TP+H+AA G+ ++ ++ + N T+ G+TPLH
Sbjct: 71 AD-VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW----------GDTPLHL 119
Query: 122 A 122
A
Sbjct: 120 A 120
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 5/142 (3%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ 231
+IL A +N D PL AA GH +I L + + V D G +PLHLA+
Sbjct: 31 RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLL-KHGADVNAIDIXGSTPLHLAAL 89
Query: 232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVD 291
G L I+E LL D + +D LHLAA GH ++V +LK +N+ D
Sbjct: 90 IGHLEIVEVLLKHGAD-VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD---VNAQDKF 145
Query: 292 GNTPLHLAAINNHFNIILVLAR 313
G T ++ N + ++ +L +
Sbjct: 146 GKTAFDISIDNGNEDLAEILQK 167
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 38 GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
GDT LH+AA GH +V +LKH +D V+ + +T ++ GN A+I +
Sbjct: 113 GDTPLHLAAIMGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
V D G +PLHLA++ G L I+E LL + D + +D LHLAA+ GH ++V
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD-VNALDFSGSTPLHLAAKRGHLEIVEV 98
Query: 275 ILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
+LK +N+ D G+TPLHLAA H I+ VL +
Sbjct: 99 LLKYGAD---VNADDTIGSTPLHLAADTGHLEIVEVLLK 134
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 5/140 (3%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ 231
+IL A +N D PL AA +GH +I L ++ + V D +G +PLHLA++
Sbjct: 31 RILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLL-KNGADVNALDFSGSTPLHLAAK 89
Query: 232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVD 291
G L I+E LL Y + D LHLAA GH ++V +LK +N+ D
Sbjct: 90 RGHLEIVEVLL-KYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD---VNAQDKF 145
Query: 292 GNTPLHLAAINNHFNIILVL 311
G T ++ N + ++ +L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + GDT LH+AAR GH +V +LK+
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNG 70
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHN 121
+D V+ + TP+H+AA+ G+ ++ ++ + N T G+TPLH
Sbjct: 71 AD-VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTI----------GSTPLHL 119
Query: 122 A 122
A
Sbjct: 120 A 120
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 285 INSSDVDGNTPLHLAAINNHFNIILVLARN 314
+N+ D G+TPLHLAA H I+ VL +N
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLLKN 69
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 38 GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIF 91
G T LH+AA GH +V +LK+ +D V+ + +T ++ GN A+I
Sbjct: 113 GSTPLHLAADTGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
V D G +PLHLA+ G L I+E LL + D + D+ LHLAA+ GH ++V
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD-VNAKDSLGVTPLHLAARRGHLEIVEV 98
Query: 275 ILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN 314
+LK +N+SD G TPLHLAA H I+ VL +N
Sbjct: 99 LLKNGAD---VNASDSHGFTPLHLAAKRGHLEIVEVLLKN 135
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 5/142 (3%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ 231
+IL A +N RD PL AA GH +I L ++ + V D G +PLHLA++
Sbjct: 31 RILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLL-KNGADVNAKDSLGVTPLHLAAR 89
Query: 232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVD 291
G L I+E LL + D + D+ LHLAA+ GH ++V +LK +N+ D
Sbjct: 90 RGHLEIVEVLLKNGAD-VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD---VNAQDKF 145
Query: 292 GNTPLHLAAINNHFNIILVLAR 313
G T ++ N + ++ +L +
Sbjct: 146 GKTAFDISIDNGNEDLAEILQK 167
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + G T LH+AA FGH +V +LK+
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNG 70
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHN 121
+D V+ + TP+H+AAR G+ ++ ++ NG + + D G TPLH
Sbjct: 71 AD-VNAKDSLGVTPLHLAARRGHLEIVEVLLK---NGAD-------VNASDSHGFTPLHL 119
Query: 122 AVRKCDGKMAFTMIK 136
A ++ ++ ++K
Sbjct: 120 AAKRGHLEIVEVLLK 134
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
D +G +PLHLA+ NG L I+E LL + D + D LHLAA GH ++V +LK
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNGAD-VNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
+N+ D DG+TPLHLAA H I+ VL +
Sbjct: 103 GAD---VNAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 5/140 (3%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ 231
+IL A +N D PL AA+ GH +I L ++ + V D G +PLHLA+
Sbjct: 31 RILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLL-KNGADVNASDLTGITPLHLAAA 89
Query: 232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVD 291
G L I+E LL D + DN LHLAA+ GH ++V +LK +N+ D
Sbjct: 90 TGHLEIVEVLLKHGAD-VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD---VNAQDKF 145
Query: 292 GNTPLHLAAINNHFNIILVL 311
G T ++ N + ++ +L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + T +G T LH+AA GH +V +LK+
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNG 70
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHN 121
+D V+ + TP+H+AA G+ ++ ++ HG N D +G+TPLH
Sbjct: 71 AD-VNASDLTGITPLHLAAATGHLEIVEVLLK-HGADVNA---------YDNDGHTPLHL 119
Query: 122 AVR 124
A +
Sbjct: 120 AAK 122
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLV 215
T LH A ++ +L+ D +N D PL AAA GH +I L + + V
Sbjct: 49 TPLHLAASNGHLEIVEVLLKNGAD-VNASDLTGITPLHLAAATGHLEIVEVLL-KHGADV 106
Query: 216 YQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADV 271
+D +G +PLHLA++ G L I+E LL D + D + ++ NG+ D+
Sbjct: 107 NAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDL 161
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 19 KVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHV 78
++ E NG + + G T LH+AA GH +V +LKH +D V+ ++ TP+H+
Sbjct: 61 EIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGAD-VNAYDNDGHTPLHL 119
Query: 79 AARAGNFGAAQIFMRPHG 96
AA+ G+ ++ ++ HG
Sbjct: 120 AAKYGHLEIVEVLLK-HG 136
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 285 INSSDVDGNTPLHLAAINNHFNIILVLARN 314
+N++D DG TPLHLAA N H I+ VL +N
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEIVEVLLKN 69
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 37 NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIF 91
+G T LH+AA++GH +V +LKH +D V+ + +T ++ GN A+I
Sbjct: 112 DGHTPLHLAAKYGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
V +D G +PLHL NG L I+E LL Y + D LHLAA GH ++V
Sbjct: 40 VNANDWFGITPLHLVVNNGHLEIIEVLL-KYAADVNASDKSGWTPLHLAAYRGHLEIVEV 98
Query: 275 ILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
+LK +N+ D G TPLHLAA + H I+ VL +
Sbjct: 99 LLKYGAD---VNAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 12/123 (9%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + G T LH+ GH ++ +LK+
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYA 70
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHN 121
+D V+ + TP+H+AA G+ ++ ++ + N D +G TPLH
Sbjct: 71 AD-VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN----------AMDYQGYTPLHL 119
Query: 122 AVR 124
A
Sbjct: 120 AAE 122
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 155 LTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSL 214
+T LH + ++ +L+ D +N D+ PL AA GH +I L L
Sbjct: 48 ITPLHLVVNNGHLEIIEVLLKYAAD-VNASDKSGWTPLHLAAYRGHLEIVEVL------L 100
Query: 215 VYQHDCN-----GQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA 269
Y D N G +PLHLA+++G L I+E LL Y + D + ++ NG+
Sbjct: 101 KYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNE 159
Query: 270 DVVVFILK 277
D+ + K
Sbjct: 160 DLAEILQK 167
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 38 GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
G T LH+AA GH +V +LK+ +D V+ + +T ++ GN A+I +
Sbjct: 113 GYTPLHLAAEDGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
D G +PLHLA+ +G L I+E LL D ++ D LHLAA GH ++V +LK
Sbjct: 44 DNTGLTPLHLAAVSGHLEIVEVLLKHGAD-VDAADVYGFTPLHLAAMTGHLEIVEVLLKY 102
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
+N+ D+ G+TPLHLAA H I+ VL +
Sbjct: 103 GAD---VNAFDMTGSTPLHLAADEGHLEIVEVLLK 134
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRL----SDEDDSLVYQHDCNGQSPLH 227
+IL A +N D PL AA GH +I L +D D + VY G +PLH
Sbjct: 31 RILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVY-----GFTPLH 85
Query: 228 LASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
LA+ G L I+E LL Y + D LHLAA GH ++V +LK
Sbjct: 86 LAAMTGHLEIVEVLL-KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLK 134
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + G T LH+AA GH +V +LKH
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILIA-NGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHG 70
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHN 121
+D V + TP+H+AA G+ ++ ++ G + F D G+TPLH
Sbjct: 71 AD-VDAADVYGFTPLHLAAMTGHLEIVEVLLK---YGADVNAF-------DMTGSTPLHL 119
Query: 122 A 122
A
Sbjct: 120 A 120
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 252 IDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
+DN LHLAA +GH ++V +LK ++++DV G TPLHLAA+ H I+ VL
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLLKHGAD---VDAADVYGFTPLHLAAMTGHLEIVEVL 99
Query: 312 AR 313
+
Sbjct: 100 LK 101
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 285 INSSDVDGNTPLHLAAINNHFNIILVLAR 313
+N+ D G TPLHLAA++ H I+ VL +
Sbjct: 40 VNAVDNTGLTPLHLAAVSGHLEIVEVLLK 68
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
V HD G +PLHLA+ G I+E LL D + D LHLAA NGH ++V
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIVEV 98
Query: 275 ILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
+LK +N+ D G TPLHLAA H I+ VL +
Sbjct: 99 LLKYGAD---VNAQDAYGLTPLHLAADRGHLEIVEVLLK 134
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ 231
+IL A +N D++ PL AA +GH +I L + + V D +G +PLHLA+
Sbjct: 31 RILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLL-KHGADVNARDTDGWTPLHLAAD 89
Query: 232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVD 291
NG L I+E LL Y + D LHLAA GH ++V +LK +N+ D
Sbjct: 90 NGHLEIVEVLL-KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD---VNAQDKF 145
Query: 292 GNTPLHLAAINNHFNIILVLAR 313
G T ++ N + ++ +L +
Sbjct: 146 GKTAFDISIDNGNEDLAEILQK 167
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 12/135 (8%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + G T LH+AA GH +V +LKH
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHG 70
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHN 121
+D V+ + TP+H+AA G+ ++ ++ + N +D G TPLH
Sbjct: 71 AD-VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVN----------AQDAYGLTPLHL 119
Query: 122 AVRKCDGKMAFTMIK 136
A + ++ ++K
Sbjct: 120 AADRGHLEIVEVLLK 134
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 38 GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
G T LH+AA GH +V +LKH +D V+ + +T ++ GN A+I +
Sbjct: 113 GLTPLHLAADRGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 218 HDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
+D G++PLH+A+ G L I+E LL + D + +D LHLAA GH ++V +LK
Sbjct: 31 YDHYGRTPLHMAAAVGHLEIVEVLLRNGAD-VNAVDTNGTTPLHLAASLGHLEIVEVLLK 89
Query: 278 QPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
+N+ D G TPL+LAA H I+ VL +
Sbjct: 90 YGAD---VNAKDATGITPLYLAAYWGHLEIVEVLLK 122
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ 231
+IL A N D R PL AAA+GH +I L + + V D NG +PLHLA+
Sbjct: 19 RILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLL-RNGADVNAVDTNGTTPLHLAAS 77
Query: 232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
G L I+E LL Y + D L+LAA GH ++V +LK
Sbjct: 78 LGHLEIVEVLL-KYGADVNAKDATGITPLYLAAYWGHLEIVEVLLK 122
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 7 KLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVS 66
KL A R G D+VR NG G T LH+AA GH +V +L++ +D+ +
Sbjct: 5 KLLEAARAGQDDEVR-ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNA 63
Query: 67 VPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNA 122
V + + TP+H+AA G+ ++ ++ + N +D G TPL+ A
Sbjct: 64 VDTNGT-TPLHLAASLGHLEIVEVLLKYGADVN----------AKDATGITPLYLA 108
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 19 KVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHV 78
++ E NG + NG T LH+AA GH +V +LK+ +D V+ + TP+++
Sbjct: 49 EIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD-VNAKDATGITPLYL 107
Query: 79 AARAGNFGAAQIFMRPHG 96
AA G+ ++ ++ HG
Sbjct: 108 AAYWGHLEIVEVLLK-HG 124
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 286 NSSDVDGNTPLHLAAINNHFNIILVLARN 314
N+ D G TPLH+AA H I+ VL RN
Sbjct: 29 NAYDHYGRTPLHMAAAVGHLEIVEVLLRN 57
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 37 NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIF 91
G T L++AA +GH +V +LKH +D V+ + +T ++ GN A+I
Sbjct: 100 TGITPLYLAAYWGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDIGNEDLAEIL 153
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
V D +G++PLHLA+ G L I+E LL D + D LHLAA GH ++V
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPLHLAALYGHLEIVEV 98
Query: 275 ILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
+LK +N++D G TPLHLAA H I+ VL +
Sbjct: 99 LLKNGAD---VNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + +G T LH+AA GH +V +LKH
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHG 70
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHN 121
+D V+ + +TP+H+AA G+ ++ ++ + N T T+ G TPLH
Sbjct: 71 AD-VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTY----------GFTPLHL 119
Query: 122 A 122
A
Sbjct: 120 A 120
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ 231
+IL A +N D+ + PL AA GH +I L + + V D G +PLHLA+
Sbjct: 31 RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLL-KHGADVNAADKMGDTPLHLAAL 89
Query: 232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVD 291
G L I+E LL + D + D LHLAA GH ++V +LK +N+ D
Sbjct: 90 YGHLEIVEVLLKNGAD-VNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD---VNAQDKF 145
Query: 292 GNTPLHLAAINNHFNIILVLAR 313
G T ++ N + ++ +L +
Sbjct: 146 GKTAFDISIDNGNEDLAEILQK 167
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 253 DNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLA 312
D+ + LHLAA GH ++V +LK +N++D G+TPLHLAA+ H I+ VL
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLLKHGAD---VNAADKMGDTPLHLAALYGHLEIVEVLL 100
Query: 313 RN 314
+N
Sbjct: 101 KN 102
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 38 GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGN 97
GDT LH+AA +GH +V +LK+ +D V+ + TP+H+AA AG+ ++ ++ +
Sbjct: 80 GDTPLHLAALYGHLEIVEVLLKNGAD-VNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD 138
Query: 98 GNNTGTF 104
N F
Sbjct: 139 VNAQDKF 145
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 74/199 (37%), Gaps = 52/199 (26%)
Query: 79 AARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKD 138
AARAG +I M NG + + D+ G TP
Sbjct: 21 AARAGQDDEVRILM---ANGAD-------VNAEDDSGKTP-------------------- 50
Query: 139 PEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAAL 198
LH A IK ++ +L+ D +N D+ PL AA
Sbjct: 51 -------------------LHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPLHLAALY 90
Query: 199 GHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRN 258
GH +I L ++ + V D G +PLHLA+ G L I+E LL Y + D +
Sbjct: 91 GHLEIVEVLL-KNGADVNATDTYGFTPLHLAADAGHLEIVEVLL-KYGADVNAQDKFGKT 148
Query: 259 ILHLAAQNGHADVVVFILK 277
++ NG+ D+ + K
Sbjct: 149 AFDISIDNGNEDLAEILQK 167
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 5 DHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDL 64
D L A +G+ + V + NG + T G T LH+AA GH +V +LK+ +D
Sbjct: 81 DTPLHLAALYGHLEIVEVLLK-NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD- 138
Query: 65 VSVPNHKSETPMHVAARAGNFGAAQIFMR 93
V+ + +T ++ GN A+I +
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
D G +PLHLA+ +G L I+E LL D ++ D LHLAA GH ++V +LK
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPLHLAAYWGHLEIVEVLLKN 102
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
+N+ D DG TPLHLAA + I+ VL +
Sbjct: 103 GAD---VNAMDSDGMTPLHLAAKWGYLEIVEVLLK 134
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 13/146 (8%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRL----SDEDDSLVYQHDCNGQSPLH 227
+IL A +N D PL AA GH +I L +D D S V+ G +PLH
Sbjct: 31 RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF-----GYTPLH 85
Query: 228 LASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINS 287
LA+ G L I+E LL + D + +D+ LHLAA+ G+ ++V +LK +N+
Sbjct: 86 LAAYWGHLEIVEVLLKNGAD-VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD---VNA 141
Query: 288 SDVDGNTPLHLAAINNHFNIILVLAR 313
D G T ++ N + ++ +L +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + G T LH+AA GH +V +LKH
Sbjct: 12 SDLGRKLLEAARAGQDDEVR-ILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHG 70
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHN 121
+D V + TP+H+AA G+ ++ ++ NG + + D +G TPLH
Sbjct: 71 AD-VDASDVFGYTPLHLAAYWGHLEIVEVLLK---NGAD-------VNAMDSDGMTPLHL 119
Query: 122 AVR 124
A +
Sbjct: 120 AAK 122
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 253 DNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLA 312
DN LHLAA +GH ++V +LK +++SDV G TPLHLAA H I+ VL
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGAD---VDASDVFGYTPLHLAAYWGHLEIVEVLL 100
Query: 313 RN 314
+N
Sbjct: 101 KN 102
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 19 KVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHV 78
++ E NG + +G T LH+AA++G+ +V +LKH +D V+ + +T +
Sbjct: 94 EIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD-VNAQDKFGKTAFDI 152
Query: 79 AARAGNFGAAQIFMR 93
+ GN A+I +
Sbjct: 153 SIDNGNEDLAEILQK 167
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
D G +PLHLA+ G L I+E LL + D + D LHLAA GH ++V +LK
Sbjct: 44 DVVGWTPLHLAAYWGHLEIVEVLLKNGAD-VNAYDTLGSTPLHLAAHFGHLEIVEVLLKN 102
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
+N+ D +G TPLHLAA H I+ VL +
Sbjct: 103 GAD---VNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ 231
+IL A +N D PL AA GH +I L ++ + V +D G +PLHLA+
Sbjct: 31 RILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLL-KNGADVNAYDTLGSTPLHLAAH 89
Query: 232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVD 291
G L I+E LL + D + D+ LHLAA GH ++V +LK +N+ D
Sbjct: 90 FGHLEIVEVLLKNGAD-VNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD---VNAQDKF 145
Query: 292 GNTPLHLAAINN 303
G T + +INN
Sbjct: 146 GKTAFDI-SINN 156
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + G T LH+AA +GH +V +LK+
Sbjct: 12 SDLGKKLLEAARAGRDDEVR-ILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNG 70
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHN 121
+D V+ + TP+H+AA G+ ++ ++ NG + + +D+ G TPLH
Sbjct: 71 AD-VNAYDTLGSTPLHLAAHFGHLEIVEVLLK---NGAD-------VNAKDDNGITPLHL 119
Query: 122 AVRKCDGKMAFTMIK 136
A + ++ ++K
Sbjct: 120 AANRGHLEIVEVLLK 134
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 260 LHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN 314
LHLAA GH ++V +LK +N+ D G+TPLHLAA H I+ VL +N
Sbjct: 51 LHLAAYWGHLEIVEVLLKNGAD---VNAYDTLGSTPLHLAAHFGHLEIVEVLLKN 102
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 285 INSSDVDGNTPLHLAAINNHFNIILVLARN 314
+N++DV G TPLHLAA H I+ VL +N
Sbjct: 40 VNAADVVGWTPLHLAAYWGHLEIVEVLLKN 69
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 19 KVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHV 78
++ E NG + NG T LH+AA GH +V +LK+ +D V+ + +T +
Sbjct: 94 EIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD-VNAQDKFGKTAFDI 152
Query: 79 AARAGNFGAAQIFMR 93
+ GN A+I +
Sbjct: 153 SINNGNEDLAEILQK 167
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 221 NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPE 280
+G +PLH A++NG ++ LL D + LHLAA+NGHA++V +L +
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 281 VEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
+N+ DGNTP HLA N H I+ +L
Sbjct: 67 D---VNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 35 SQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRP 94
S++G+T LH AA+ GH V ++L +D V+ + TP+H+AA+ G+ ++ +
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 95 HGNGNNTGTFDDILRKRDEEGNTPLH 120
+ + R ++GNTP H
Sbjct: 65 GAD----------VNARSKDGNTPEH 80
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 8 LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
L A ++G+ ++V++ G + S++G+T LH+AA+ GH +V +L +D V+
Sbjct: 13 LHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNA 70
Query: 68 PNHKSETPMHVAARAG 83
+ TP H+A + G
Sbjct: 71 RSKDGNTPEHLAKKNG 86
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 113 EEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAK 172
++GNTPLHNA + + ++ K + N ++K G T LH A K+ + K
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGAD---VNARSKDGN---TPLHLA-AKNGHAEIVK 59
Query: 173 ILEAKRDLINVRDERNRNPLRYAAALGHFKI 203
+L AK +N R + P A GH +I
Sbjct: 60 LLLAKGADVNARSKDGNTPEHLAKKNGHHEI 90
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 222 GQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEV 281
G +PLHLA+ G L I+E LL + D + D+ LHLAA GH +VV +LK
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGAD-VNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD 105
Query: 282 EDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
+N++D +G TPLHLAA H I+ VL +
Sbjct: 106 ---VNANDHNGFTPLHLAANIGHLEIVEVLLK 134
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ 231
+IL A +N D PL AA GH +I L ++ + V D G +PLHLA+
Sbjct: 31 RILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLL-KNGADVNADDSLGVTPLHLAAD 89
Query: 232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVD 291
G L ++E LL + D + D+ LHLAA GH ++V +LK +N+ D
Sbjct: 90 RGHLEVVEVLLKNGAD-VNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD---VNAQDKF 145
Query: 292 GNTPLHLAAINNHFNIILVLAR 313
G T ++ N + ++ +L +
Sbjct: 146 GKTAFDISIDNGNEDLAEILQK 167
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + + G T LH+AA FGH +V +LK+
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNG 70
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHN 121
+D V+ + TP+H+AA G+ ++ ++ NG + + D G TPLH
Sbjct: 71 AD-VNADDSLGVTPLHLAADRGHLEVVEVLLK---NGAD-------VNANDHNGFTPLHL 119
Query: 122 A 122
A
Sbjct: 120 A 120
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 155 LTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSL 214
T LH A ++ +L+ D +N D PL AA GH ++ L ++ +
Sbjct: 48 WTPLHLAAYFGHLEIVEVLLKNGAD-VNADDSLGVTPLHLAADRGHLEVVEVLL-KNGAD 105
Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
V +D NG +PLHLA+ G L I+E LL D + D + ++ NG+ D+
Sbjct: 106 VNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 275 ILK 277
+ K
Sbjct: 165 LQK 167
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 260 LHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN 314
LHLAA GH ++V +LK +N+ D G TPLHLAA H ++ VL +N
Sbjct: 51 LHLAAYFGHLEIVEVLLKNGAD---VNADDSLGVTPLHLAADRGHLEVVEVLLKN 102
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 19 KVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHV 78
+V E NG + NG T LH+AA GH +V +LKH +D V+ + +T +
Sbjct: 94 EVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD-VNAQDKFGKTAFDI 152
Query: 79 AARAGNFGAAQIFMR 93
+ GN A+I +
Sbjct: 153 SIDNGNEDLAEILQK 167
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 285 INSSDVDGNTPLHLAAINNHFNIILVLARN 314
+N+SD G TPLHLAA H I+ VL +N
Sbjct: 40 VNASDHVGWTPLHLAAYFGHLEIVEVLLKN 69
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 224 SPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVED 283
+PLH A++ G LS++ L+ Y ID + + +HLAAQ GH +V +++ + + D
Sbjct: 78 TPLHWATRQGHLSMVVQLM-KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD 136
Query: 284 LINSSDVDGNTPLHLAAINNH 304
++ D +G TPL AA H
Sbjct: 137 MM---DQNGMTPLMWAAYRTH 154
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 9/161 (5%)
Query: 154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRL--SDED 211
N+TLLH A I ++ ++ + + + + N PL +A GH + +L D
Sbjct: 42 NVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD 101
Query: 212 DSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADV 271
SL+ D G S +HLA+Q G SI+ L+ D ++ +D L AA H+
Sbjct: 102 PSLI---DGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVD 157
Query: 272 VVFILKQPEVEDLINSSD-VDGNTPLHLAAINNHFNIILVL 311
+L V +N D NT LH A + + +I +L
Sbjct: 158 PTRLLLTFNVS--VNLGDKYHKNTALHWAVLAGNTTVISLL 196
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 25/153 (16%)
Query: 40 TALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGN 99
T LH A R GH +V++++K+ +D S+ + + + +H+AA+ FG I G
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQ---FGHTSIVAYLIAKGQ 133
Query: 100 NTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEP--IRYNNKAKQGP--NNL 155
+ D++ D+ G TPL A A+ DP + +N G +
Sbjct: 134 DV----DMM---DQNGMTPLMWA--------AYRTHSVDPTRLLLTFNVSVNLGDKYHKN 178
Query: 156 TLLHSAIIKSQFVVMAKILEAKR--DLINVRDE 186
T LH A++ V++ +LEA D N++ E
Sbjct: 179 TALHWAVLAGNTTVISLLLEAGANVDAQNIKGE 211
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 253 DNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLA 312
D +N +LH AA N D+V + + + + D + D++ +TPLH A H ++++ L
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQL-GGDLN-STPLHWATRQGHLSMVVQLM 96
Query: 313 R 313
+
Sbjct: 97 K 97
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 8 LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
L A R G+ V + + + L G + +H+AA+FGH +V ++ D V +
Sbjct: 80 LHWATRQGHLSMVVQLMKYGADPSL-IDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDM 137
Query: 68 PNHKSETPMHVAA 80
+ TP+ AA
Sbjct: 138 MDQNGMTPLMWAA 150
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 216 YQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFI 275
+ D G SPLHLA+Q G S E LL + S + +R LH+AA GHA++V +
Sbjct: 28 FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV-SRDARTKVDRTPLHMAASEGHANIVEVL 86
Query: 276 LKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
LK +N+ D+ T LH A +NH ++ +L +
Sbjct: 87 LKHGAD---VNAKDMLKMTALHWATEHNHQEVVELLIK 121
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 229 ASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSS 288
A Q+ ++ IL + + P + +++ + LHLAAQ GH +L+ D
Sbjct: 12 AGQDDEVRIL--MANGAPFTTDWL---GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV 66
Query: 289 DVDGNTPLHLAAINNHFNIILVLARN 314
D TPLH+AA H NI+ VL ++
Sbjct: 67 D---RTPLHMAASEGHANIVEVLLKH 89
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 7 KLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVS 66
KL A R G D+VR NG T G + LH+AA++GH E+L
Sbjct: 5 KLLEAARAGQDDEVR-ILMANGAPFT-TDWLGTSPLHLAAQYGH-FSTTEVLLRAGVSRD 61
Query: 67 VPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
TP+H+AA G+ ++ ++ HG
Sbjct: 62 ARTKVDRTPLHMAASEGHANIVEVLLK-HG 90
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 74 TPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFT 133
+P+H+AA+ G+F ++ +R G D K D TPLH A + +
Sbjct: 36 SPLHLAAQYGHFSTTEVLLRA-------GVSRDARTKVD---RTPLHMAASEGHANIVEV 85
Query: 134 MIK 136
++K
Sbjct: 86 LLK 88
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + + G+T LH+AA + H +V +LKH
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHG 70
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
+D V+ ++ TP+H+AA G+ ++ ++ HG
Sbjct: 71 AD-VNAHDNDGSTPLHLAALFGHLEIVEVLLK-HG 103
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 253 DNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLA 312
D K LHLAA H ++V +LK +N+ D DG+TPLHLAA+ H I+ VL
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGAD---VNAHDNDGSTPLHLAALFGHLEIVEVLL 100
Query: 313 R 313
+
Sbjct: 101 K 101
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ 231
+IL A +N D + PL AA H +I L + + V HD +G +PLHLA+
Sbjct: 31 RILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLL-KHGADVNAHDNDGSTPLHLAAL 89
Query: 232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
G L I+E LL D + D + ++ NG+ D+ + K
Sbjct: 90 FGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 37 NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
+G T LH+AA FGH +V +LKH +D V+ + +T ++ GN A+I +
Sbjct: 79 DGSTPLHLAALFGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 285 INSSDVDGNTPLHLAAINNHFNIILVLAR 313
+N++D GNTPLHLAA +H I+ VL +
Sbjct: 40 VNANDRKGNTPLHLAADYDHLEIVEVLLK 68
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 221 NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPE 280
N +SPLH A++ G + I L+ + + I+ R L AA+N H + V +++K
Sbjct: 10 NKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 281 VEDLINSSDVDGNTPLHLAAINNHFNIILVLARN 314
L++ D +G+T LHLAA H+ ++ L N
Sbjct: 69 ---LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSN 99
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 5/136 (3%)
Query: 180 LINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILE 239
L++ +D L AA GH+++ L V D G +P+ A++ + +++
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 240 NLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLA 299
LL D I DN+ LH AA +G D+ +L + +++ ++ G++PLH+A
Sbjct: 129 LLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLA---AKCDLHAVNIHGDSPLHIA 184
Query: 300 AINNHFN-IILVLARN 314
A N ++ ++L L+R+
Sbjct: 185 ARENRYDCVVLFLSRD 200
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 102/246 (41%), Gaps = 29/246 (11%)
Query: 74 TPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFT 133
+P+H AA AG+ + ++ G N T E+ TPL A +
Sbjct: 13 SPLHAAAEAGHVDICHMLVQA---GANIDTC-------SEDQRTPLMEAAENNHLEAVKY 62
Query: 134 MIKK----DPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNR 189
+IK DP K +G T LH A K + V+ +L + +N +D+
Sbjct: 63 LIKAGALVDP-------KDAEGS---TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGW 112
Query: 190 NPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSI 249
P+ +A H + +L S + D LH A+ +G + I E LL + D +
Sbjct: 113 TPMIWATEYKHVDLV-KLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD-L 170
Query: 250 EFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIIL 309
++ + LH+AA+ D VV L + L N +G TPL A++N+ L
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK---EGETPLQCASLNSQVWSAL 227
Query: 310 VLARNM 315
+++ +
Sbjct: 228 QMSKAL 233
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 4/126 (3%)
Query: 186 ERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSY 245
+ R+PL AA GH I C + + + + + ++PL A++N L ++ L+ +
Sbjct: 9 QNKRSPLHAAAEAGHVDI-CHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67
Query: 246 PDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHF 305
++ D + LHLAA+ GH +VV ++L +++ +N D G TP+ A H
Sbjct: 68 A-LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD--VNCQDDGGWTPMIWATEYKHV 124
Query: 306 NIILVL 311
+++ +L
Sbjct: 125 DLVKLL 130
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 41 ALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNN 100
LH AA G + +L + DL +V H ++P+H+AAR + +F+
Sbjct: 147 CLHWAAFSGCVDIAEILLAAKCDLHAVNIH-GDSPLHIAARENRYDCVVLFL-------- 197
Query: 101 TGTFDDILRKRDEEGNTPLHNA 122
+ D + +++EG TPL A
Sbjct: 198 --SRDSDVTLKNKEGETPLQCA 217
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 38 GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAA 80
GD+ LHIAAR V+ L SD V++ N + ETP+ A+
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQCAS 218
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + G T LH+AA+ GH +V +LKH
Sbjct: 12 SDLGKKLLEATRAGQDDEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTF 104
+D V+ + TP+H+AA G+ ++ + + N F
Sbjct: 71 AD-VNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 229 ASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSS 288
A++ GQ + L+ + D + +D+ LHLAA+ GH ++V +LK +N+S
Sbjct: 21 ATRAGQDDEVRILMANGAD-VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD---VNAS 76
Query: 289 DVDGNTPLHLAAINNHFNIILVL 311
D G TPLHLAA H I+ VL
Sbjct: 77 DSWGRTPLHLAATVGHLEIVEVL 99
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
D G +PLHLA++ G L I+E LL D + D+ R LHLAA GH ++V +L
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDSWGRTPLHLAATVGHLEIVEVLL-- 100
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
E +N+ D G T ++ N + ++ +L +
Sbjct: 101 -EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ 231
+IL A +N D+ PL AA GH +I L + + V D G++PLHLA+
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLL-KHGADVNASDSWGRTPLHLAAT 89
Query: 232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
G L I+E LL Y + D + ++ NG+ D+ + K
Sbjct: 90 VGHLEIVEVLLE-YGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDS 213
+T LH A + ++ +L+ D +N D R PL AA +GH +I L
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDSWGRTPLHLAATVGHLEIVEVL------ 99
Query: 214 LVYQHDCNGQ 223
L Y D N Q
Sbjct: 100 LEYGADVNAQ 109
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 285 INSSDVDGNTPLHLAAINNHFNIILVLAR 313
+N+ D G TPLHLAA H I+ VL +
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLK 68
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 45 AARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTF 104
A R G + V ++ + +D V+ + TP+H+AA+ G+ ++ ++ HG N
Sbjct: 21 ATRAGQDDEVRILMANGAD-VNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNA--- 75
Query: 105 DDILRKRDEEGNTPLHNA 122
D G TPLH A
Sbjct: 76 ------SDSWGRTPLHLA 87
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 89/216 (41%), Gaps = 16/216 (7%)
Query: 42 LHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNT 101
LH A V E+L + L+ + P+H + + N N
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN-- 63
Query: 102 GTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSA 161
DD D+ G TP H A + ++ ++ + +P N QG +T LH A
Sbjct: 64 --LDDY---PDDSGWTPFHIACSVGNLEVVKSLYDRPLKP-DLNKITNQG---VTCLHLA 114
Query: 162 IIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCN 221
+ K F V ++E + ++D+ N+ PL AA++G K+ L S V D
Sbjct: 115 VGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ 173
Query: 222 GQSPLH--LASQNGQLSILENLLHSYPDSIEFIDNK 255
G +PL LA +G ++L L+ Y + +DNK
Sbjct: 174 GWTPLFHALAEGHGDAAVL--LVEKYGAEYDLVDNK 207
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 225 PLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDL 284
PLH A + ++ LLHS P + D R LH + ++ F+L + E +L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 285 INSSDVDGNTPLHLAAINNHFNII 308
+ D G TP H+A + ++
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVV 88
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 53/132 (40%), Gaps = 15/132 (11%)
Query: 191 PLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ-------NGQLSILENL-L 242
PL A F L SL+ Q D +G+ PLH + + LS +EN+ L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 243 HSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAIN 302
YP D+ H+A G+ +VV + +P DL N G T LHLA
Sbjct: 65 DDYP------DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGK 117
Query: 303 NHFNIILVLARN 314
F + L N
Sbjct: 118 KWFEVSQFLIEN 129
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 89/216 (41%), Gaps = 16/216 (7%)
Query: 42 LHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNT 101
LH A V E+L + L+ + P+H + + N N
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN-- 63
Query: 102 GTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSA 161
DD D+ G TP H A + ++ ++ + +P N QG +T LH A
Sbjct: 64 --LDDY---PDDSGWTPFHIACSVGNLEVVKSLYDRPLKP-DLNKITNQG---VTCLHLA 114
Query: 162 IIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCN 221
+ K F V ++E + ++D+ N+ PL AA++G K+ L S V D
Sbjct: 115 VGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ 173
Query: 222 GQSPLH--LASQNGQLSILENLLHSYPDSIEFIDNK 255
G +PL LA +G ++L L+ Y + +DNK
Sbjct: 174 GWTPLFHALAEGHGDAAVL--LVEKYGAEYDLVDNK 207
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 225 PLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDL 284
PLH A + ++ LLHS P + D R LH + ++ F+L + E +L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 285 INSSDVDGNTPLHLAAINNHFNII 308
+ D G TP H+A + ++
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVV 88
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 53/132 (40%), Gaps = 15/132 (11%)
Query: 191 PLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ-------NGQLSILENL-L 242
PL A F L SL+ Q D +G+ PLH + + LS +EN+ L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 243 HSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAIN 302
YP D+ H+A G+ +VV + +P DL N G T LHLA
Sbjct: 65 DDYP------DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGK 117
Query: 303 NHFNIILVLARN 314
F + L N
Sbjct: 118 KWFEVSQFLIEN 129
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 89/216 (41%), Gaps = 16/216 (7%)
Query: 42 LHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNT 101
LH A V E+L + L+ + P+H + + N N
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN-- 63
Query: 102 GTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSA 161
DD D+ G TP H A + ++ ++ + +P N QG +T LH A
Sbjct: 64 --LDDY---PDDSGWTPFHIACSVGNLEVVKSLYDRPLKP-DLNKITNQG---VTCLHLA 114
Query: 162 IIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCN 221
+ K F V ++E + ++D+ N+ PL AA++G K+ L S V D
Sbjct: 115 VGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ 173
Query: 222 GQSPLH--LASQNGQLSILENLLHSYPDSIEFIDNK 255
G +PL LA +G ++L L+ Y + +DNK
Sbjct: 174 GWTPLFHALAEGHGDAAVL--LVEKYGAEYDLVDNK 207
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 225 PLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDL 284
PLH A + ++ LLHS P + D R LH + ++ F+L + E +L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 285 INSSDVDGNTPLHLAAINNHFNII 308
+ D G TP H+A + ++
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVV 88
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 53/132 (40%), Gaps = 15/132 (11%)
Query: 191 PLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ-------NGQLSILENL-L 242
PL A F L SL+ Q D +G+ PLH + + LS +EN+ L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 243 HSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAIN 302
YP D+ H+A G+ +VV + +P DL N G T LHLA
Sbjct: 65 DDYP------DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGK 117
Query: 303 NHFNIILVLARN 314
F + L N
Sbjct: 118 KWFEVSQFLIEN 129
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 225 PLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDL 284
PLH A++ G LS L L + + +D L+ A GH D+V + QP +E
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRV-GVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIE-- 132
Query: 285 INSSDVDGNTPLHLAAINNHFNII-LVLAR 313
+N + G+T LH AA + +I+ L+LA+
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAK 162
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 3 TVDHKLFRALRHGYTDKVREFARLNGNRIL--GTSQNGDTALHIAARFGHEILVMEILKH 60
++D+ L A + G +RE NR+ G + G TAL+ A GH+ +V +
Sbjct: 72 SIDNPLHEAAKRGNLSWLRECLD---NRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQ 128
Query: 61 QSDLVSVPNHKSETPMHVAARAGNFGAAQIFM 92
+ ++ N +T +H AA G Q+ +
Sbjct: 129 PNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNR---NILHLAAQNGHADVVVFI 275
D G + L+ A G I+E L + P+ IE ++ +N+ LH AA G+AD+V +
Sbjct: 103 DKAGSTALYWACHGGHKDIVEXLF-TQPN-IE-LNQQNKLGDTALHAAAWKGYADIVQLL 159
Query: 276 LKQPEVEDLIN 286
L + DL N
Sbjct: 160 LAKGARTDLRN 170
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + G T LH+AA+ GH +V +LKH
Sbjct: 12 SDLGKKLLEATRAGQDDEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTF 104
+D V+ + TP+H+AA G+ ++ + + N F
Sbjct: 71 AD-VNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 229 ASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSS 288
A++ GQ + L+ + D + +D+ LHLAA+ GH ++V +LK +N+S
Sbjct: 21 ATRAGQDDEVRILMANGAD-VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD---VNAS 76
Query: 289 DVDGNTPLHLAAINNHFNIILVL 311
D+ G TPLHLAA H I+ VL
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVL 99
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ 231
+IL A +N D+ PL AA GH +I L + + V D G++PLHLA+
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLL-KHGADVNASDIWGRTPLHLAAT 89
Query: 232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
G L I+E LL Y + D + ++ NG+ D+ + K
Sbjct: 90 VGHLEIVEVLLE-YGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
D G +PLHLA++ G L I+E LL D + D R LHLAA GH ++V +L
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDIWGRTPLHLAATVGHLEIVEVLL-- 100
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
E +N+ D G T ++ N + ++ +L +
Sbjct: 101 -EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDS 213
+T LH A + ++ +L+ D +N D R PL AA +GH +I L
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDIWGRTPLHLAATVGHLEIVEVL------ 99
Query: 214 LVYQHDCNGQ 223
L Y D N Q
Sbjct: 100 LEYGADVNAQ 109
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 285 INSSDVDGNTPLHLAAINNHFNIILVLAR 313
+N+ D G TPLHLAA H I+ VL +
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLK 68
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + ++G T LH+AA+ GH +V +LK+
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYG 70
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
+D V+ ++ TP+H+AA G+ ++ ++ HG
Sbjct: 71 AD-VNAEDNFGITPLHLAAIRGHLEIVEVLLK-HG 103
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
D +G +PLHLA+Q G L I+E LL Y + DN LHLAA GH ++V +LK
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLL-KYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKH 102
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
+N+ D G T ++ N + ++ +L +
Sbjct: 103 GAD---VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 252 IDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
+D LHLAAQ GH ++V +LK +N+ D G TPLHLAAI H I+ VL
Sbjct: 43 LDEDGLTPLHLAAQLGHLEIVEVLLKYGAD---VNAEDNFGITPLHLAAIRGHLEIVEVL 99
Query: 312 AR 313
+
Sbjct: 100 LK 101
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 12/111 (10%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCN-----GQSPL 226
+IL A +N DE PL AA LGH +I L L Y D N G +PL
Sbjct: 31 RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVL------LKYGADVNAEDNFGITPL 84
Query: 227 HLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
HLA+ G L I+E LL D + D + ++ NG+ D+ + K
Sbjct: 85 HLAAIRGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 38 GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
G T LH+AA GH +V +LKH +D V+ + +T ++ GN A+I +
Sbjct: 80 GITPLHLAAIRGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 45 AARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTF 104
AAR G + V ++ + +D V+ + TP+H+AA+ G+ ++ ++ + N F
Sbjct: 21 AARAGQDDEVRILMANGAD-VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNF 79
Query: 105 DDILRKRDEEGNTPLHNA 122
G TPLH A
Sbjct: 80 ----------GITPLHLA 87
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 16/174 (9%)
Query: 113 EEGNTPLHNAVRKCDGKMAFTMI---KKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVV 169
E+G++ LH A+ + + +I K D + + N +Q P LH A+I +Q +
Sbjct: 3 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTP-----LHLAVITNQPEI 57
Query: 170 MAKILEAKRDLINVRDERNRNPLRYA------AALGHFKIACRLSDEDDSLVYQHDCNGQ 223
+L A D +RD R PL A A++G +C + S++ + NG
Sbjct: 58 AEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCT-TPHLHSILKATNYNGH 115
Query: 224 SPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
+ LHLAS +G L I+E L+ D R LHLA + D+V +LK
Sbjct: 116 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 169
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 223 QSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ---- 278
Q+PLHLA Q I E LL + D E D + LHLA + G V +L Q
Sbjct: 43 QTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQG-CLASVGVLTQSCTT 100
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLA 312
P + ++ +++ +G+T LHLA+I+ + I+ +L
Sbjct: 101 PHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 134
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 32/223 (14%)
Query: 35 SQNGDTALHIAARFGHEILVMEILKH-QSDL--VSVPNHKSETPMHVAARAGNFGAAQIF 91
+++GD+ LH+A + L ME+++ + DL ++ N+ +TP+H+A A+
Sbjct: 2 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 61
Query: 92 MRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQG 151
+ G G + RD GNTPLH A + + + P ++
Sbjct: 62 L---GAGCDP-------ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 111
Query: 152 PNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERN-RNPLRYAAALGH---FKIACRL 207
N T LH A I ++ ++ D +N ++ N R L A L + + +
Sbjct: 112 YNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 170
Query: 208 SDEDDSLVYQHDCNGQSPLHLA---------SQNGQLSILENL 241
+ + + YQ G SP L Q GQL+ LENL
Sbjct: 171 GADVNRVTYQ----GYSPYQLTWGRPSTRIQQQLGQLT-LENL 208
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 26/166 (15%)
Query: 34 TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
TSQ+G + LH+AA G L+ +LKH ++ N P+H+A + G+F + +
Sbjct: 82 TSQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLD 140
Query: 94 PHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDG---KMAFTMIKKDPEPIRYNNKAKQ 150
+ N K+D GNTPL + C G ++ +++ NNK
Sbjct: 141 SNAKPN----------KKDLSGNTPL---IYACSGGHHELVALLLQHGASINASNNKGN- 186
Query: 151 GPNNLTLLHSAII-KSQFVVMAKILEAKRDLINVRDERNRNPLRYA 195
T LH A+I K FVV +L + V ++R R + A
Sbjct: 187 -----TALHEAVIEKHVFVVELLLLHGAS--VQVLNKRQRTAVDCA 225
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 181 INVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQS-------PLHLASQNG 233
+NV + +PL AA G + L+ +H N + PLHLA Q G
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLI--------PLLLKHGANAGARNADQAVPLHLACQQG 130
Query: 234 QLSILENLLHS--YPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVD 291
+++ LL S P+ + N L A GH ++V +L+ IN+S+
Sbjct: 131 HFQVVKCLLDSNAKPNKKDLSGN---TPLIYACSGGHHELVALLLQHGAS---INASNNK 184
Query: 292 GNTPLHLAAINNHFNIILVL 311
GNT LH A I H ++ +L
Sbjct: 185 GNTALHEAVIEKHVFVVELL 204
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 191 PLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIE 250
PL A GHF++ L D ++ + D +G +PL A G ++ LL + SI
Sbjct: 122 PLHLACQQGHFQVVKCLLD-SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQ-HGASIN 179
Query: 251 FIDNKNRNILHLAAQNGHADVVVFIL 276
+NK LH A H VV +L
Sbjct: 180 ASNNKGNTALHEAVIEKHVFVVELLL 205
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + G T LH+AA+ GH +V +LKH
Sbjct: 12 SDLGKKLLEATRAGQDDEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTF 104
+D V+ + TP+H+AA G+ ++ + + N F
Sbjct: 71 AD-VNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 229 ASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSS 288
A++ GQ + L+ + D + +D+ LHLAA+ GH ++V +LK +N+
Sbjct: 21 ATRAGQDDEVRILMANGAD-VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD---VNAR 76
Query: 289 DVDGNTPLHLAAINNHFNIILVL 311
D+ G TPLHLAA H I+ VL
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVL 99
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ 231
+IL A +N D+ PL AA GH +I L + + V D G++PLHLA+
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLL-KHGADVNARDIWGRTPLHLAAT 89
Query: 232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
G L I+E LL Y + D + ++ NG+ D+ + K
Sbjct: 90 VGHLEIVEVLLE-YGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
D G +PLHLA++ G L I+E LL D + D R LHLAA GH ++V +L
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNARDIWGRTPLHLAATVGHLEIVEVLL-- 100
Query: 279 PEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
E +N+ D G T ++ N + ++ +L +
Sbjct: 101 -EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 285 INSSDVDGNTPLHLAAINNHFNIILVLAR 313
+N+ D G TPLHLAA H I+ VL +
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLK 68
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 45 AARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTF 104
A R G + V ++ + +D V+ + TP+H+AA+ G+ ++ ++ HG N
Sbjct: 21 ATRAGQDDEVRILMANGAD-VNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNA--- 75
Query: 105 DDILRKRDEEGNTPLHNA 122
RD G TPLH A
Sbjct: 76 ------RDIWGRTPLHLA 87
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 16/178 (8%)
Query: 109 RKRDEEGNTPLHNAVRKCDGKMAFTMI---KKDPEPIRYNNKAKQGPNNLTLLHSAIIKS 165
++ E+G++ LH A+ + + +I K D + + N +Q P LH A+I +
Sbjct: 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTP-----LHLAVITN 56
Query: 166 QFVVMAKILEAKRDLINVRDERNRNPLRYA------AALGHFKIACRLSDEDDSLVYQHD 219
Q + +L A D +RD R PL A A++G +C + S++ +
Sbjct: 57 QPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCT-TPHLHSILKATN 114
Query: 220 CNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
NG + LHLAS +G L I+E L+ D R LHLA + D+V +LK
Sbjct: 115 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 223 QSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNG---HADVVVFILKQP 279
Q+PLHLA Q I E LL + D E D + LHLA + G V+ P
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 104
Query: 280 EVEDLINSSDVDGNTPLHLAAINNHFNIILVLA 312
+ ++ +++ +G+T LHLA+I+ + I+ +L
Sbjct: 105 HLHSILKATNYNGHTCLHLASIHGYLGIVELLV 137
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 32/223 (14%)
Query: 35 SQNGDTALHIAARFGHEILVMEILKH-QSDL--VSVPNHKSETPMHVAARAGNFGAAQIF 91
+++GD+ LH+A + L ME+++ + DL ++ N+ +TP+H+A A+
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 92 MRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQG 151
+ G G + RD GNTPLH A + + + P ++
Sbjct: 65 L---GAGCDP-------ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 114
Query: 152 PNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERN-RNPLRYAAALGH---FKIACRL 207
N T LH A I ++ ++ D +N ++ N R L A L + + +
Sbjct: 115 YNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 173
Query: 208 SDEDDSLVYQHDCNGQSPLHLA---------SQNGQLSILENL 241
+ + + YQ G SP L Q GQL+ LENL
Sbjct: 174 GADVNRVTYQ----GYSPYQLTWGRPSTRIQQQLGQLT-LENL 211
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 23/214 (10%)
Query: 111 RDEEGNTPLHNAVRKCDGKMAFTMIKKDPE--PIRYNNKAKQGPN--------NLTLLHS 160
R +G TPL + C G T ++ E P ++ QG + T LH
Sbjct: 6 RGPDGFTPL--MIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHL 63
Query: 161 AIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAA---ALGHFKIACRLSDEDDSLVYQ 217
A S+ ++LEA D N++D R PL A A G F+I R + D
Sbjct: 64 AAAYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR-NRATDLDARM 121
Query: 218 HDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
HD G +PL LA++ +LE+L++S+ D + +D+ ++ LH AA + D V +LK
Sbjct: 122 HD--GTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLK 178
Query: 278 QPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
+D+ N+ + TPL LAA + VL
Sbjct: 179 NGANKDMQNNRE---ETPLFLAAREGSYETAKVL 209
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 21/178 (11%)
Query: 34 TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
T + G TALH+AA + +L+ +D ++ ++ TP+H A A G QI +R
Sbjct: 53 TDRTGATALHLAAAYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR 111
Query: 94 PHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPN 153
L R +G TPL A R M +I + ++ K
Sbjct: 112 NRATD---------LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA-- 160
Query: 154 NLTLLHSAIIKSQFVVMAKILE--AKRDLINVRDERNRNPLRYAAALGHFKIACRLSD 209
LH A + +L+ A +D+ N R+E PL AA G ++ A L D
Sbjct: 161 ----LHWAAAVNNVDAAVVLLKNGANKDMQNNREE---TPLFLAAREGSYETAKVLLD 211
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 38 GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGN 97
G +ALH AA + + +LK+ ++ + N++ ETP+ +AAR G++ A++ + N
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFAN 215
Query: 98 GNNTGTFDDILRKRDEE 114
+ T D + R +E
Sbjct: 216 RDITDHMDRLPRDIAQE 232
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 203 IACRLS-DEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILH 261
+A RL D ++ + Q D +G SPLH A + G+ +++E L+ I ++ + LH
Sbjct: 19 VAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA-RINVMNRGDDTPLH 77
Query: 262 LAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAI 301
LAA +GH D+V +L + + IN+ + GN PLH A
Sbjct: 78 LAASHGHRDIVQKLL---QYKADINAVNEHGNVPLHYACF 114
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 8 LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
L A R G + V E + G RI ++ DT LH+AA GH +V ++L++++D+ +V
Sbjct: 43 LHWACREGRS-AVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 101
Query: 68 PNHKSETPMHVAARAG 83
H P+H A G
Sbjct: 102 NEH-GNVPLHYACFWG 116
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 158 LHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQ 217
LH A + + V+ ++L + INV + + PL AA+ GH I +L L Y+
Sbjct: 43 LHWACREGRSAVV-EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL------LQYK 95
Query: 218 HDCN-----GQSPLHLASQNGQLSILENLL 242
D N G PLH A GQ + E+L+
Sbjct: 96 ADINAVNEHGNVPLHYACFWGQDQVAEDLV 125
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 260 LHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNII 308
LH A + G + VV ++ + +++N D +TPLHLAA + H +I+
Sbjct: 43 LHWACREGRSAVVEMLIMRGARINVMNRGD---DTPLHLAASHGHRDIV 88
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + G T LH+AA GH +V +LK+
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILTA-NGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNG 70
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
+D V+ + TP+H+AA A + ++ ++ HG
Sbjct: 71 AD-VNATGNTGRTPLHLAAWADHLEIVEVLLK-HG 103
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
V +D G +PLHLA+ G L I+E LL + D + N R LHLAA H ++V
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD-VNATGNTGRTPLHLAAWADHLEIVEV 98
Query: 275 ILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
+LK +N+ D G T ++ N + ++ +L +
Sbjct: 99 LLKHGAD---VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ 231
+IL A +N D PL AA LGH +I L ++ + V G++PLHLA+
Sbjct: 31 RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLL-KNGADVNATGNTGRTPLHLAAW 89
Query: 232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
L I+E LL D + D + ++ NG+ D+ + K
Sbjct: 90 ADHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 285 INSSDVDGNTPLHLAAINNHFNIILVLARN 314
+N++D G+TPLHLAA+ H I+ VL +N
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLEIVEVLLKN 69
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 19 KVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHV 78
++ E NG + T G T LH+AA H +V +LKH +D V+ + +T +
Sbjct: 61 EIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGAD-VNAQDKFGKTAFDI 119
Query: 79 AARAGNFGAAQIFMR 93
+ GN A+I +
Sbjct: 120 SIDNGNEDLAEILQK 134
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 45 AARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTF 104
AAR G + V + + +D V+ ++ TP+H+AA G+ ++ ++ + N TG
Sbjct: 21 AARAGQDDEVRILTANGAD-VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGN- 78
Query: 105 DDILRKRDEEGNTPLHNA 122
G TPLH A
Sbjct: 79 ---------TGRTPLHLA 87
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 203 IACRLS-DEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILH 261
+A RL D ++ + Q D +G SPLH A + G+ +++E L+ I ++ + LH
Sbjct: 14 VAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA-RINVMNRGDDTPLH 72
Query: 262 LAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAI 301
LAA +GH D+V +L + + IN+ + GN PLH A
Sbjct: 73 LAASHGHRDIVQKLL---QYKADINAVNEHGNVPLHYACF 109
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 8 LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
L A R G + V E + G RI ++ DT LH+AA GH +V ++L++++D+ +V
Sbjct: 38 LHWACREGRS-AVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 96
Query: 68 PNHKSETPMHVAARAG 83
H P+H A G
Sbjct: 97 NEH-GNVPLHYACFWG 111
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 158 LHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQ 217
LH A + + V+ ++L + INV + + PL AA+ GH I +L L Y+
Sbjct: 38 LHWACREGRSAVV-EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL------LQYK 90
Query: 218 HDCN-----GQSPLHLASQNGQLSILENLL 242
D N G PLH A GQ + E+L+
Sbjct: 91 ADINAVNEHGNVPLHYACFWGQDQVAEDLV 120
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 260 LHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNII 308
LH A + G + VV ++ + +++N D +TPLHLAA + H +I+
Sbjct: 38 LHWACREGRSAVVEMLIMRGARINVMNRGD---DTPLHLAASHGHRDIV 83
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 23/214 (10%)
Query: 111 RDEEGNTPLHNAVRKCDGKMAFTMIKKDPE--PIRYNNKAKQGPN--------NLTLLHS 160
R +G TPL + C G T ++ E P ++ QG + T LH
Sbjct: 7 RGPDGFTPL--MIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHL 64
Query: 161 AIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAA---ALGHFKIACRLSDEDDSLVYQ 217
A S+ ++LEA D N++D R PL A A G F+I R + D
Sbjct: 65 AARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR-NRATDLDARM 122
Query: 218 HDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
HD G +PL LA++ +LE+L++S+ D + +D+ ++ LH AA + D V +LK
Sbjct: 123 HD--GTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLK 179
Query: 278 QPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
+D+ N+ + TPL LAA + VL
Sbjct: 180 NGANKDMQNNRE---ETPLFLAAREGSYETAKVL 210
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 21/178 (11%)
Query: 34 TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
T + G+TALH+AAR+ +L+ +D ++ ++ TP+H A A G QI +R
Sbjct: 54 TDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR 112
Query: 94 PHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPN 153
L R +G TPL A R M +I + ++ K
Sbjct: 113 NRATD---------LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK---- 159
Query: 154 NLTLLHSAIIKSQFVVMAKILE--AKRDLINVRDERNRNPLRYAAALGHFKIACRLSD 209
+ LH A + +L+ A +D+ N R+E PL AA G ++ A L D
Sbjct: 160 --SALHWAAAVNNVDAAVVLLKNGANKDMQNNREE---TPLFLAAREGSYETAKVLLD 212
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 38 GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGN 97
G +ALH AA + + +LK+ ++ + N++ ETP+ +AAR G++ A++ + N
Sbjct: 158 GKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFAN 216
Query: 98 GNNTGTFDDILRKRDEE 114
+ T D + R +E
Sbjct: 217 RDITDHMDRLPRDIAQE 233
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 53 LVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRD 112
++ + + + L + + ET +H+AAR AA+ + + N +D
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN----------IQD 88
Query: 113 EEGNTPLHNAVRKCDGKMAFTMI 135
G TPLH AV D + F ++
Sbjct: 89 NMGRTPLHAAV-SADAQGVFQIL 110
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 23/214 (10%)
Query: 111 RDEEGNTPLHNAVRKCDGKMAFTMIKKDPE--PIRYNNKAKQGPN--------NLTLLHS 160
R +G TPL + C G T ++ E P ++ QG + T LH
Sbjct: 6 RGPDGFTPL--MIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHL 63
Query: 161 AIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAA---ALGHFKIACRLSDEDDSLVYQ 217
A S+ ++LEA D N++D R PL A A G F+I R + D
Sbjct: 64 AARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR-NRATDLDARM 121
Query: 218 HDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
HD G +PL LA++ +LE+L++S+ D + +D+ ++ LH AA + D V +LK
Sbjct: 122 HD--GTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLK 178
Query: 278 QPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
+D+ N+ + TPL LAA + VL
Sbjct: 179 NGANKDMQNNRE---ETPLFLAAREGSYETAKVL 209
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 74/178 (41%), Gaps = 21/178 (11%)
Query: 34 TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
T + G+TALH+AAR+ +L+ +D ++ ++ TP+H A A G QI +R
Sbjct: 53 TDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR 111
Query: 94 PHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPN 153
L R +G TPL A R M +I + ++ K
Sbjct: 112 NRATD---------LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA-- 160
Query: 154 NLTLLHSAIIKSQFVVMAKILE--AKRDLINVRDERNRNPLRYAAALGHFKIACRLSD 209
LH A + +L+ A +D+ N R+E PL AA G ++ A L D
Sbjct: 161 ----LHWAAAVNNVDAAVVLLKNGANKDMQNNREE---TPLFLAAREGSYETAKVLLD 211
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 38 GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGN 97
G +ALH AA + + +LK+ ++ + N++ ETP+ +AAR G++ A++ + N
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFAN 215
Query: 98 GNNTGTFDDILRKRDEE 114
+ T D + R +E
Sbjct: 216 RDITDHMDRLPRDIAQE 232
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 53 LVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRD 112
++ + + + L + + ET +H+AAR AA+ + + N +D
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN----------IQD 87
Query: 113 EEGNTPLHNAVRKCDGKMAFTMI 135
G TPLH AV D + F ++
Sbjct: 88 NMGRTPLHAAV-SADAQGVFQIL 109
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 79/159 (49%), Gaps = 11/159 (6%)
Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAA---ALGHFKIACRLSDEDD 212
T LH A S+ ++LEA D N++D R PL A A G F+I R + D
Sbjct: 27 TALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR-NRATD 84
Query: 213 SLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVV 272
HD G +PL LA++ +LE+L++S+ D + +D+ ++ LH AA + D
Sbjct: 85 LDARMHD--GTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAA 141
Query: 273 VFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
V +LK +D+ N+ + TPL LAA + VL
Sbjct: 142 VVLLKNGANKDMQNNRE---ETPLFLAAREGSYETAKVL 177
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 74/178 (41%), Gaps = 21/178 (11%)
Query: 34 TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
T + G+TALH+AAR+ +L+ +D ++ ++ TP+H A A G QI +R
Sbjct: 21 TDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR 79
Query: 94 PHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPN 153
L R +G TPL A R M +I + ++ K
Sbjct: 80 NRATD---------LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA-- 128
Query: 154 NLTLLHSAIIKSQFVVMAKILE--AKRDLINVRDERNRNPLRYAAALGHFKIACRLSD 209
LH A + +L+ A +D+ N R+E PL AA G ++ A L D
Sbjct: 129 ----LHWAAAVNNVDAAVVLLKNGANKDMQNNREE---TPLFLAAREGSYETAKVLLD 179
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 38 GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGN 97
G +ALH AA + + +LK+ ++ + N++ ETP+ +AAR G++ A++ + N
Sbjct: 125 GKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFAN 183
Query: 98 GNNTGTFDDILRKRDEE 114
+ T D + R +E
Sbjct: 184 RDITDHMDRLPRDIAQE 200
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 210 EDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA 269
E ++++ D G +PL A+ +GQ++++E LL + D + + + L LA G+
Sbjct: 40 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKGYT 98
Query: 270 DVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
D+V +L + +N D +G TPL A NH + +L
Sbjct: 99 DIVKMLL---DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 137
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 251 FIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILV 310
+ N +H A G ++++ + E E++IN +D +G TPL AA + ++
Sbjct: 14 YFQGANSLSVHQLAAQGE---MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEF 70
Query: 311 LARN 314
L +N
Sbjct: 71 LLQN 74
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 210 EDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA 269
E ++++ D G +PL A+ +GQ++++E LL + D + + + L LA G+
Sbjct: 24 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKGYT 82
Query: 270 DVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
D+V +L + +N D +G TPL A NH + +L
Sbjct: 83 DIVKMLL---DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 261 HLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN 314
LAAQ ++++ + E E++IN +D +G TPL AA + ++ L +N
Sbjct: 9 QLAAQG----EMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 58
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 210 EDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHA 269
E ++++ D G +PL A+ +GQ++++E LL + D + + + L LA G+
Sbjct: 22 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKGYT 80
Query: 270 DVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
D+V +L + +N D +G TPL A NH + +L
Sbjct: 81 DIVKMLL---DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 119
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 261 HLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN 314
LAAQ ++++ + E E++IN +D +G TPL AA + ++ L +N
Sbjct: 7 QLAAQGE----MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 56
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 218 HDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
D +G SP+H A++ G L L+ L+ D + +D+ +HLA + GH+ VV F+
Sbjct: 72 QDASGTSPVHDAARTGFLDTLKVLVEHGAD-VNALDSTGSLPIHLAIREGHSSVVSFL-- 128
Query: 278 QPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM 315
PE + ++ D G TPL LA N++ +L +M
Sbjct: 129 APESD--LHHRDASGLTPLELARQRGAQNLMDILQGHM 164
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 164 KSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQ 223
++ F+ K+L +N D P+ A GH + L+ E D ++ D +G
Sbjct: 85 RTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESD--LHHRDASGL 142
Query: 224 SPLHLASQNGQLSILENL 241
+PL LA Q G ++++ L
Sbjct: 143 TPLELARQRGAQNLMDIL 160
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 218 HDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
D +G SP+H A++ G L L+ L+ D + +D+ +HLA + GH+ VV F+
Sbjct: 70 QDASGTSPVHDAARTGFLDTLKVLVEHGAD-VNALDSTGSLPIHLAIREGHSSVVSFL-- 126
Query: 278 QPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM 315
PE + ++ D G TPL LA N++ +L +M
Sbjct: 127 APESD--LHHRDASGLTPLELARQRGAQNLMDILQGHM 162
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 164 KSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQ 223
++ F+ K+L +N D P+ A GH + L+ E D ++ D +G
Sbjct: 83 RTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESD--LHHRDASGL 140
Query: 224 SPLHLASQNGQLSILENL 241
+PL LA Q G ++++ L
Sbjct: 141 TPLELARQRGAQNLMDIL 158
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 198 LGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNR 257
G IA L + S Q D +G SP+H A++ G L L+ L+ D + D
Sbjct: 45 FGSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGA 102
Query: 258 NILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM 315
+HLA Q GH VV F+ + + ++ D G TPL LA +++ +L +M
Sbjct: 103 LPIHLAVQEGHTAVVSFLAAESD----LHRRDARGLTPLELALQRGAQDLVDILQGHM 156
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 164 KSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQ 223
++ F+ K+L +NV D P+ A GH + L+ E D +++ D G
Sbjct: 77 RTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESD--LHRRDARGL 134
Query: 224 SPLHLASQNGQLSILENL 241
+PL LA Q G +++ L
Sbjct: 135 TPLELALQRGAQDLVDIL 152
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 37 NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
+G + +H AAR G + +++H +D V+VP+ P+H+A + G+
Sbjct: 67 SGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFL----- 120
Query: 97 NGNNTGTFDDILRKRDEEGNTPLHNAVRK 125
+ L +RD G TPL A+++
Sbjct: 121 ------AAESDLHRRDARGLTPLELALQR 143
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 222 GQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEV 281
G++ LH A+Q I++ L+ + + D + + LAAQ G +VV ++++Q
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Query: 282 EDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
+ ++++D +T LA NNH NI+ + R
Sbjct: 339 VEAVDATD---HTARQLAQANNHHNIVDIFDR 367
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 223 QSPLHLASQN-GQLSILENLLHSYPDSIEFIDNK-NRNILHLAAQNGHA----DVVVFIL 276
+SP+ L ++ G +I E + +S+ ID + NR +LH A N A D++V
Sbjct: 93 ESPIKLHTEAAGSYAITEPITR---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEA 149
Query: 277 KQPEVEDL-INSSDVDGNTPLHLAAINNHFNIILVLAR 313
K+ +N+ D D NTPL LA + ++ L +
Sbjct: 150 KECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXK 187
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 113/301 (37%), Gaps = 52/301 (17%)
Query: 5 DHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDL 64
+H L +A+++ D V++ N + G T LH A + E +V +L+H +D
Sbjct: 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65
Query: 65 VSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVR 124
V + TP +AA AG+ ++F+ + N + G T A
Sbjct: 66 V-LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFY----------GFTAFMEAA- 113
Query: 125 KCDGKM-AFTMIKKDPEPIRYNNKAKQGPNNL-----TLLHSAIIKSQFVVMAKILEAKR 178
GK+ A + K + K K+ L T L A K V+ +L+
Sbjct: 114 -VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 172
Query: 179 DLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSIL 238
+N D RN L +A L+S + + +
Sbjct: 173 ADVNACDNMGRNALIHAL-------------------------------LSSDDSDVEAI 201
Query: 239 ENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHL 298
+LL + + + + L LA + H +V +L+Q +E IN +D DG T L L
Sbjct: 202 THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE--INDTDSDGKTALLL 259
Query: 299 A 299
A
Sbjct: 260 A 260
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 198 LGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNR 257
G IA L + S Q D +G SP+H A++ G L L+ L+ D + D
Sbjct: 51 FGSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGA 108
Query: 258 NILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNM 315
+HLA Q GH VV F+ + + ++ D G TPL LA +++ +L +M
Sbjct: 109 LPIHLAVQEGHTAVVSFLAAESD----LHRRDARGLTPLELALQRGAQDLVDILQGHM 162
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 164 KSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQ 223
++ F+ K+L +NV D P+ A GH + L+ E D +++ D G
Sbjct: 83 RTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESD--LHRRDARGL 140
Query: 224 SPLHLASQNGQLSILENL 241
+PL LA Q G +++ L
Sbjct: 141 TPLELALQRGAQDLVDIL 158
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 37 NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
+G + +H AAR G + +++H +D V+VP+ P+H+A + G+
Sbjct: 73 SGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFL----- 126
Query: 97 NGNNTGTFDDILRKRDEEGNTPLHNAVRK 125
+ L +RD G TPL A+++
Sbjct: 127 ------AAESDLHRRDARGLTPLELALQR 149
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 113/301 (37%), Gaps = 52/301 (17%)
Query: 5 DHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDL 64
+H L +A+++ D V++ N + G T LH A + E +V +L+H +D
Sbjct: 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 85
Query: 65 VSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVR 124
V + TP +AA AG+ ++F+ + N + G T A
Sbjct: 86 V-LRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFY----------GFTAFMEAA- 133
Query: 125 KCDGKM-AFTMIKKDPEPIRYNNKAKQGPNNL-----TLLHSAIIKSQFVVMAKILEAKR 178
GK+ A + K + K K+ L T L A K V+ +L+
Sbjct: 134 -VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 192
Query: 179 DLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSIL 238
+N D RN L +A L+S + + +
Sbjct: 193 ADVNACDNMGRNALIHAL-------------------------------LSSDDSDVEAI 221
Query: 239 ENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHL 298
+LL + + + + L LA + H +V +L+Q +E IN +D DG T L L
Sbjct: 222 THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE--INDTDSDGKTALLL 279
Query: 299 A 299
A
Sbjct: 280 A 280
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 212 DSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADV 271
D+LV + D G +PL AS G++ + LL D + + + L LA+ G+ D+
Sbjct: 26 DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGGYTDI 84
Query: 272 VVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNII-LVLARN 314
V +L++ +V+ IN D +G TPL A NH + +LAR
Sbjct: 85 VGLLLER-DVD--INIYDWNGGTPLLYAVRGNHVKCVEALLARG 125
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 8/129 (6%)
Query: 105 DDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIK 164
D+++ K DE G TPL A + + +++ +P + AK+ + L+L +
Sbjct: 26 DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP---HILAKERESALSLASTGGYT 82
Query: 165 SQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQS 224
++ +LE D IN+ D PL YA H K L L + D +G +
Sbjct: 83 D---IVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD-SGYT 137
Query: 225 PLHLASQNG 233
P+ LA G
Sbjct: 138 PMDLAVALG 146
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 46/162 (28%)
Query: 176 AKRDLINVRDERNRNPLRYAAALGH-------FKIACRLSDEDDSLVYQHDCNGQSPLHL 228
A + L D+ +R L +A + GH ++ ++D+DD+ G SPLH+
Sbjct: 29 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA--------GWSPLHI 80
Query: 229 ASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK---QPEVED-- 283
A+ G+ I++ LL + ++ LH AA ++ V +L+ P+ +D
Sbjct: 81 AASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 139
Query: 284 -------------------------LINSSDVDGNTPLHLAA 300
N D +GNTPLHLA
Sbjct: 140 EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC 181
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 211 DDSLVYQHDCNGQSPLHLASQNGQLSILENLLH-SYPDSIEFIDNKNRNILHLAAQNGHA 269
D SL + D + ++ LH A G I+E LL P + D+ + LH+AA G
Sbjct: 30 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGRD 87
Query: 270 DVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
++V +L + +N+ + +G TPLH AA N I ++L
Sbjct: 88 EIVKALLGKGAQ---VNAVNQNGCTPLHYAASKNRHEIAVML 126
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 78/196 (39%), Gaps = 19/196 (9%)
Query: 34 TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
T Q+ TALH A GH +V E L V+ + +P+H+AA AG +I
Sbjct: 37 TDQDSRTALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGWSPLHIAASAGR---DEIVKA 92
Query: 94 PHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPN 153
G G ++ G TPLH A K ++A +++ P ++
Sbjct: 93 LLGKGAQVNAV-------NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY------ 139
Query: 154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDS 213
T +H A K M IL + N++D PL A + A L + S
Sbjct: 140 EATAMHRAAAKGNL-KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS 198
Query: 214 LVYQHDCNGQSPLHLA 229
+Y + ++PL +A
Sbjct: 199 -IYIENKEEKTPLQVA 213
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 46/162 (28%)
Query: 176 AKRDLINVRDERNRNPLRYAAALGH-------FKIACRLSDEDDSLVYQHDCNGQSPLHL 228
A + L D+ +R L +A + GH ++ ++D+DD+ G SPLH+
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA--------GWSPLHI 79
Query: 229 ASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK---QPEVED-- 283
A+ G+ I++ LL + ++ LH AA ++ V +L+ P+ +D
Sbjct: 80 AASAGRDEIVKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 138
Query: 284 -------------------------LINSSDVDGNTPLHLAA 300
N D +GNTPLHLA
Sbjct: 139 EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC 180
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 211 DDSLVYQHDCNGQSPLHLASQNGQLSILENLLH-SYPDSIEFIDNKNRNILHLAAQNGHA 269
D SL + D + ++ LH A G I+E LL P + D+ + LH+AA G
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGRD 86
Query: 270 DVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
++V +L + +N+ + +G TPLH AA N I ++L
Sbjct: 87 EIVKALLGKGAQ---VNAVNQNGCTPLHYAASKNRHEIAVML 125
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 78/196 (39%), Gaps = 19/196 (9%)
Query: 34 TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
T Q+ TALH A GH +V E L V+ + +P+H+AA AG +I
Sbjct: 36 TDQDSRTALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGWSPLHIAASAGR---DEIVKA 91
Query: 94 PHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPN 153
G G ++ G TPLH A K ++A +++ P ++
Sbjct: 92 LLGKGAQVNAV-------NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY------ 138
Query: 154 NLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDS 213
T +H A K M IL + N++D PL A + A L + S
Sbjct: 139 EATAMHRAAAKGNL-KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS 197
Query: 214 LVYQHDCNGQSPLHLA 229
+Y + ++PL +A
Sbjct: 198 -IYIENKEEKTPLQVA 212
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 180 LINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILE 239
L N RD NR PL A LG +L + D L D G + L A +N +L I E
Sbjct: 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAE 85
Query: 240 NLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLA 299
LL S ++ D + L + G++++ F+L+ +N +++G TPL +A
Sbjct: 86 KLL-SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN---VNDRNLEGETPLIVA 141
Query: 300 A 300
+
Sbjct: 142 S 142
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 15/161 (9%)
Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAA---ALGHFKIACR--LSDE 210
T LH A S+ ++LEA D ++D R PL A A G F+I R +D
Sbjct: 24 TALHLAARYSRSDAAKRLLEASAD-AXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDL 82
Query: 211 DDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHAD 270
D + HD G +PL LA++ +LE+L++S+ D + +D+ ++ LH AA + D
Sbjct: 83 DARM---HD--GTTPLILAARLALEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVD 136
Query: 271 VVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
V +LK +D+ N+ + TPL LAA + VL
Sbjct: 137 AAVVLLKNGANKDMQNNKE---ETPLFLAAREGSYETAKVL 174
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 73/178 (41%), Gaps = 21/178 (11%)
Query: 34 TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
T + G+TALH+AAR+ +L+ +D + ++ TP+H A A G QI +R
Sbjct: 18 TDRTGETALHLAARYSRSDAAKRLLEASAD-AXIQDNMGRTPLHAAVSADAQGVFQILLR 76
Query: 94 PHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPN 153
L R +G TPL A R M +I + ++ K
Sbjct: 77 NRATD---------LDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSA-- 125
Query: 154 NLTLLHSAIIKSQFVVMAKILE--AKRDLINVRDERNRNPLRYAAALGHFKIACRLSD 209
LH A + +L+ A +D+ N ++E PL AA G ++ A L D
Sbjct: 126 ----LHWAAAVNNVDAAVVLLKNGANKDMQNNKEE---TPLFLAAREGSYETAKVLLD 176
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 38 GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGN 97
G +ALH AA + + +LK+ ++ + N+K ETP+ +AAR G++ A++ + N
Sbjct: 122 GKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNKEETPLFLAAREGSYETAKVLLDHFAN 180
Query: 98 GNNTGTFDDILRKRDEEGNTPLHNAVRKCD 127
+ T D + RD H+ VR D
Sbjct: 181 RDITDHMDRL--PRDIAQERMHHDIVRLLD 208
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
V D G +PLHLA+ N L I+E LL + D + ID LHL A GH ++V
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD-VNAIDAIGETPLHLVAMYGHLEIVEV 98
Query: 275 ILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
+LK +N+ D G T ++ N + ++ +L +
Sbjct: 99 LLKHGAD---VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + + G T LH+AA H +V +LK+
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNG 70
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
+D V+ + ETP+H+ A G+ ++ ++ HG
Sbjct: 71 AD-VNAIDAIGETPLHLVAMYGHLEIVEVLLK-HG 103
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 285 INSSDVDGNTPLHLAAINNHFNIILVLARN 314
+N+ D G TPLHLAA+N+H I+ VL +N
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKN 69
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 19 KVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHV 78
++ E NG + G+T LH+ A +GH +V +LKH +D V+ + +T +
Sbjct: 61 EIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGAD-VNAQDKFGKTAFDI 119
Query: 79 AARAGNFGAAQIFMR 93
+ GN A+I +
Sbjct: 120 SIDNGNEDLAEILQK 134
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 212 DSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADV 271
D+LV + D G +PL AS G++ + LL D + + + L LA+ G+ D+
Sbjct: 26 DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGGYTDI 84
Query: 272 VVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNII-LVLARN 314
V +L++ +V+ IN D +G TPL A NH + +LAR
Sbjct: 85 VGLLLER-DVD--INIYDWNGGTPLLYAVHGNHVKCVEALLARG 125
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 8/129 (6%)
Query: 105 DDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIK 164
D+++ K DE G TPL A + + +++ +P + AK+ + L+L +
Sbjct: 26 DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP---HILAKERESALSLASTGGYT 82
Query: 165 SQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQS 224
++ +LE D IN+ D PL YA H K L L + D +G +
Sbjct: 83 D---IVGLLLERDVD-INIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEAD-SGYT 137
Query: 225 PLHLASQNG 233
P+ LA G
Sbjct: 138 PMDLAVALG 146
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 82/195 (42%), Gaps = 25/195 (12%)
Query: 17 TDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPM 76
+D + + A LN + G+T+LH+AARF +L +D S N TP+
Sbjct: 34 SDLLAQGAELNAT----MDKTGETSLHLAARFARADAAKRLLDAGADANSQDN-TGRTPL 88
Query: 77 HVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIK 136
H A A G QI +R L R +G TPL A R M +I
Sbjct: 89 HAAVAADAMGVFQILLRNRATN---------LNARMHDGTTPLILAARLAIEGMVEDLIT 139
Query: 137 KDPEPIRYNNKAKQGPNNLTLLH--SAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRY 194
D + +N K T LH +A+ ++ V + + A RD +D+++ PL
Sbjct: 140 ADADINAADNSGK------TALHWAAAVNNTEAVNILLMHHANRD---AQDDKDETPLFL 190
Query: 195 AAALGHFKIACRLSD 209
AA G ++ + L D
Sbjct: 191 AAREGSYEASKALLD 205
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 99/229 (43%), Gaps = 30/229 (13%)
Query: 53 LVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRD 112
++ ++L ++L + + ET +H+AAR AA+ + + N+ +D
Sbjct: 32 VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANS----------QD 81
Query: 113 EEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAK 172
G TPLH AV D F ++ ++ N + G L L I+ ++
Sbjct: 82 NTGRTPLHAAV-AADAMGVFQILLRN-RATNLNARMHDGTTPLILAARLAIEG---MVED 136
Query: 173 ILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQH------DCNGQSPL 226
++ A D IN D + L +AAA+ + + + L+ H D ++PL
Sbjct: 137 LITADAD-INAADNSGKTALHWAAAVNNTEAV-------NILLMHHANRDAQDDKDETPL 188
Query: 227 HLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFI 275
LA++ G + LL ++ + E D+ +R +A++ H D+V +
Sbjct: 189 FLAAREGSYEASKALLDNFANR-EITDHMDRLPRDVASERLHHDIVRLL 236
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 37 NGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
+G TALH AA + V +L H ++ + K ETP+ +AAR G++ A++ +
Sbjct: 150 SGKTALHWAAAVNNTEAVNILLMHHANR-DAQDDKDETPLFLAAREGSYEASKALLDNFA 208
Query: 97 NGNNTGTFDDILRKRDEEGNTPLHNAVRKCD 127
N T D + RD H+ VR D
Sbjct: 209 NREITDHMDRL--PRDVASERLHHDIVRLLD 237
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 18/103 (17%)
Query: 217 QHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFIL 276
D G++PLH A + + + LL + ++ + L LAA+ +
Sbjct: 79 SQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAAR---------LA 129
Query: 277 KQPEVEDLI------NSSDVDGNTPLHL-AAINNH--FNIILV 310
+ VEDLI N++D G T LH AA+NN NI+L+
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLM 172
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 46/162 (28%)
Query: 176 AKRDLINVRDERNRNPLRYAAALGH-------FKIACRLSDEDDSLVYQHDCNGQSPLHL 228
A + L D+ +R L +A + GH ++ ++D+DD+ G SPLH+
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA--------GWSPLHI 79
Query: 229 ASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK---QPEVED-- 283
A+ G+ I++ LL + ++ LH AA ++ V +L+ P+ +D
Sbjct: 80 AASAGRDEIVKALLVKGA-HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 138
Query: 284 -------------------------LINSSDVDGNTPLHLAA 300
N D +GNTPLHLA
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC 180
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 211 DDSLVYQHDCNGQSPLHLASQNGQLSILENLLH-SYPDSIEFIDNKNRNILHLAAQNGHA 269
D SL + D + ++ LH A G I+E LL P + D+ + LH+AA G
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGRD 86
Query: 270 DVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
++V +L + +N+ + +G TPLH AA N I ++L
Sbjct: 87 EIVKALLVKGA---HVNAVNQNGCTPLHYAASKNRHEIAVML 125
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 73/184 (39%), Gaps = 22/184 (11%)
Query: 15 GYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSET 74
G D+++E + + T Q+ TALH A GH +V E L V+ + +
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGWS 75
Query: 75 PMHVAARAG--NFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAF 132
P+H+AA AG A + H N N + G TPLH A K ++A
Sbjct: 76 PLHIAASAGRDEIVKALLVKGAHVNAVN------------QNGCTPLHYAASKNRHEIAV 123
Query: 133 TMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPL 192
+++ P ++ + T +H A K M IL + N++D PL
Sbjct: 124 MLLEGGANPDAKDHY------DATAMHRAAAKGNL-KMVHILLFYKASTNIQDTEGNTPL 176
Query: 193 RYAA 196
A
Sbjct: 177 HLAC 180
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + +NG T LH+AAR GH +V +L+
Sbjct: 4 SDLGKKLLEAARAGQDDEVR-ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 62
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIF 91
+D V+ + +T ++ GN A+I
Sbjct: 63 AD-VNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
V D NG +PLHLA++NG L +++ LL + D + D + ++ NG+ D+
Sbjct: 32 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VNAQDKFGKTAFDISIDNGNEDLAEI 90
Query: 275 I 275
+
Sbjct: 91 L 91
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 285 INSSDVDGNTPLHLAAINNHFNIILVL 311
+ + D +G+TPLHLAA N H ++ +L
Sbjct: 32 VAAKDKNGSTPLHLAARNGHLEVVKLL 58
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 260 LHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
LHLAA+NGH +VV +L E +N+ D G T ++ N + ++ +L
Sbjct: 43 LHLAARNGHLEVVKLLL---EAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 45 AARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTF 104
AAR G + V ++ + +D V+ + TP+H+AAR G+ ++ + + N F
Sbjct: 13 AARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKF 71
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + + G T L++A GH +V +LK+
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG 70
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHG 96
+D V+ + TP+H+AA G+ A++ ++ HG
Sbjct: 71 AD-VNAVDAIGFTPLHLAAFIGHLEIAEVLLK-HG 103
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQ 231
+IL A +N +DE PL A A GH +I L ++ + V D G +PLHLA+
Sbjct: 31 RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL-KNGADVNAVDAIGFTPLHLAAF 89
Query: 232 NGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
G L I E LL D + D + ++ NG+ D+ + K
Sbjct: 90 IGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 260 LHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLAR 313
L+LA +GH ++V +LK +N+ D G TPLHLAA H I VL +
Sbjct: 51 LYLATAHGHLEIVEVLLKNGAD---VNAVDAIGFTPLHLAAFIGHLEIAEVLLK 101
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 8 LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
L+ A HG+ + V + NG + G T LH+AA GH + +LKH +D V+
Sbjct: 51 LYLATAHGHLEIVEVLLK-NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD-VNA 108
Query: 68 PNHKSETPMHVAARAGNFGAAQIFMR 93
+ +T ++ GN A+I +
Sbjct: 109 QDKFGKTAFDISIGNGNEDLAEILQK 134
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 211 DDSLVYQHDCNGQSPLHLASQNGQLSILENLLH-SYPDSIEFIDNKNRNILHLAAQNGHA 269
D SL + D + ++ LH A G I+E LL P + D+ + LH+AA G
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGXD 86
Query: 270 DVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
++V +L + +N+ + +G TPLH AA N I ++L
Sbjct: 87 EIVKALLVKGA---HVNAVNQNGCTPLHYAASKNRHEIAVML 125
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 46/162 (28%)
Query: 176 AKRDLINVRDERNRNPLRYAAALGH-------FKIACRLSDEDDSLVYQHDCNGQSPLHL 228
A + L D+ +R L +A + GH ++ ++D+DD+ G SPLH+
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA--------GWSPLHI 79
Query: 229 ASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK---QPEVED-- 283
A+ G I++ LL + ++ LH AA ++ V +L+ P+ +D
Sbjct: 80 AASAGXDEIVKALLVKGA-HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 138
Query: 284 -------------------------LINSSDVDGNTPLHLAA 300
N D +GNTPLHLA
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC 180
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 73/184 (39%), Gaps = 22/184 (11%)
Query: 15 GYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSET 74
G D+++E + + T Q+ TALH A GH +V E L V+ + +
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIV-EFLLQLGVPVNDKDDAGWS 75
Query: 75 PMHVAARAG--NFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAF 132
P+H+AA AG A + H N N + G TPLH A K ++A
Sbjct: 76 PLHIAASAGXDEIVKALLVKGAHVNAVN------------QNGCTPLHYAASKNRHEIAV 123
Query: 133 TMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPL 192
+++ P ++ + T +H A K M IL + N++D PL
Sbjct: 124 MLLEGGANPDAKDHY------DATAMHRAAAKGNL-KMVHILLFYKASTNIQDTEGNTPL 176
Query: 193 RYAA 196
A
Sbjct: 177 HLAC 180
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 156 TLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLV 215
TLLH A IK + +L+ D NV+D PL A GH K+ L + +LV
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKV-VELLLQHKALV 69
Query: 216 YQHDCNGQSPLHLASQNGQLSILENLL 242
SPLH A++NG + I++ LL
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
D G +PLH A +G L ++E LL + + +N + LH AA+NGH D+V +L
Sbjct: 40 DHAGWTPLHEACNHGHLKVVE-LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98
Query: 279 PEVEDLIN 286
+ +N
Sbjct: 99 GASRNAVN 106
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 34 TSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
T+ G+T LHIA+ G V +L++ SD +V +H TP+H A G+ ++ ++
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 94 PHGNGNNTGTFDDILRKRDEEGNTPLHNAVR 124
N TG +D +PLH+A +
Sbjct: 65 HKALVNTTGYQND----------SPLHDAAK 85
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 22 EFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAAR 81
E+ NG+ G T LH A GH +V +L+H++ LV+ +++++P+H AA+
Sbjct: 27 EYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA-LVNTTGYQNDSPLHDAAK 85
Query: 82 AGNFGAAQIFM 92
G+ ++ +
Sbjct: 86 NGHVDIVKLLL 96
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S + KL A R G D+VR NG + +NG T LH+AAR GH +V +L+
Sbjct: 22 SDLGKKLLEAARAGQDDEVR-ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIF 91
+D V + +T ++ GN A+I
Sbjct: 81 AD-VXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
V D NG +PLHLA++NG L +++ LL + D + D + ++ NG+ D+
Sbjct: 50 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNGNEDLAEI 108
Query: 275 I 275
+
Sbjct: 109 L 109
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 285 INSSDVDGNTPLHLAAINNHFNIILVL 311
+ + D +G+TPLHLAA N H ++ +L
Sbjct: 50 VAAKDKNGSTPLHLAARNGHLEVVKLL 76
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 224 SPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVED 283
+PLH A+ ++S++E LL D + D LH A GH +V ++K V
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV-- 100
Query: 284 LINSSDVDGNTPLHLAAINNHFNIILVL 311
+N +D+ TPLH AA + I +L
Sbjct: 101 -VNVADLWKFTPLHEAAAKGKYEICKLL 127
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 11/144 (7%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S D +L A + G + V++ + T LH AA + +V +L+H
Sbjct: 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHN 121
+D V + P+H A G++ A++ ++ HG ++ D TPLH
Sbjct: 66 AD-VHAKDKGGLVPLHNACSYGHYEVAELLVK-HGA---------VVNVADLWKFTPLHE 114
Query: 122 AVRKCDGKMAFTMIKKDPEPIRYN 145
A K ++ +++ +P + N
Sbjct: 115 AAAKGKYEICKLLLQHGADPTKKN 138
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 229 ASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSS 288
A++ G + ++ L + I+ + LH AA VV ++L+ +++
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD---VHAK 71
Query: 289 DVDGNTPLHLAAINNHFNIILVLAR 313
D G PLH A H+ + +L +
Sbjct: 72 DKGGLVPLHNACSYGHYEVAELLVK 96
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 153 NNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDD 212
L LH+A + V A++L ++NV D PL AAA G ++I C+L +
Sbjct: 74 GGLVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI-CKLLLQHG 131
Query: 213 SLVYQHDCNGQSPLHL 228
+ + + +G +PL L
Sbjct: 132 ADPTKKNRDGNTPLDL 147
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 224 SPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVED 283
+PLH A+ ++S++E LL D + D LH A GH +V ++K V
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV-- 102
Query: 284 LINSSDVDGNTPLHLAAINNHFNIILVL 311
+N +D+ TPLH AA + I +L
Sbjct: 103 -VNVADLWKFTPLHEAAAKGKYEICKLL 129
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 11/144 (7%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S D +L A + G + V++ + T LH AA + +V +L+H
Sbjct: 8 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 67
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHN 121
+D V + P+H A G++ A++ ++ HG ++ D TPLH
Sbjct: 68 AD-VHAKDKGGLVPLHNACSYGHYEVAELLVK-HGA---------VVNVADLWKFTPLHE 116
Query: 122 AVRKCDGKMAFTMIKKDPEPIRYN 145
A K ++ +++ +P + N
Sbjct: 117 AAAKGKYEICKLLLQHGADPTKKN 140
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 153 NNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDD 212
L LH+A + V A++L ++NV D PL AAA G ++I C+L +
Sbjct: 76 GGLVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI-CKLLLQHG 133
Query: 213 SLVYQHDCNGQSPLHL 228
+ + + +G +PL L
Sbjct: 134 ADPTKKNRDGNTPLDL 149
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 229 ASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSS 288
A++ G + ++ L + I+ + LH AA VV ++L+ +++
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD---VHAK 73
Query: 289 DVDGNTPLHLAAINNHFNIILVLAR 313
D G PLH A H+ + +L +
Sbjct: 74 DKGGLVPLHNACSYGHYEVAELLVK 98
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 224 SPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVED 283
+PLH A+ ++S++E LL D + D LH A GH +V ++K V
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV-- 104
Query: 284 LINSSDVDGNTPLHLAAINNHFNIILVL 311
+N +D+ TPLH AA + I +L
Sbjct: 105 -VNVADLWKFTPLHEAAAKGKYEICKLL 131
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 11/144 (7%)
Query: 2 STVDHKLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQ 61
S D +L A + G + V++ + T LH AA + +V +L+H
Sbjct: 10 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 69
Query: 62 SDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHN 121
+D V + P+H A G++ A++ ++ HG ++ D TPLH
Sbjct: 70 AD-VHAKDKGGLVPLHNACSYGHYEVAELLVK-HGA---------VVNVADLWKFTPLHE 118
Query: 122 AVRKCDGKMAFTMIKKDPEPIRYN 145
A K ++ +++ +P + N
Sbjct: 119 AAAKGKYEICKLLLQHGADPTKKN 142
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 153 NNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDD 212
L LH+A + V A++L ++NV D PL AAA G ++I C+L +
Sbjct: 78 GGLVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI-CKLLLQHG 135
Query: 213 SLVYQHDCNGQSPLHL 228
+ + + +G +PL L
Sbjct: 136 ADPTKKNRDGNTPLDL 151
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 229 ASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSS 288
A++ G + ++ L + I+ + LH AA VV ++L+ +++
Sbjct: 19 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD---VHAK 75
Query: 289 DVDGNTPLHLAAINNHFNIILVLAR 313
D G PLH A H+ + +L +
Sbjct: 76 DKGGLVPLHNACSYGHYEVAELLVK 100
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 7 KLFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVS 66
KL A R G D+VR NG + ++G T LH+AAR GH +V +LK +D V+
Sbjct: 5 KLLEAARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VN 62
Query: 67 VPNHKSETPMHVAARAGNFGAAQIFMRP 94
+ +T ++ GN A+I +
Sbjct: 63 AQDKFGKTAFDISIDNGNEDLAEILQKA 90
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 285 INSSDVDGNTPLHLAAINNHFNIILVLAR 313
+N+ D DG TPLHLAA H I+ VL +
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 215 VYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVF 274
V D +G +PLHLA++ G L I+E LL + D + D + ++ NG+ D+
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTAFDISIDNGNEDLAEI 86
Query: 275 ILK 277
+ K
Sbjct: 87 LQK 89
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 45 AARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTF 104
AAR G + V ++ + +D V+ + TP+H+AAR G+ ++ ++ + N F
Sbjct: 9 AARAGQDDEVRILMANGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 67
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
D G + +H A++ GQL L+ LL D + DN+ LHLAA+ GH VV F++K
Sbjct: 67 DRTGFAVIHDAARAGQLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 259 ILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS 316
++H AA+ G D + +L E + +N D +GN PLHLAA H ++ L ++ +
Sbjct: 73 VIHDAARAGQLDTLQTLL---EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 38 GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVA 79
G+ LH+AA+ GH +V ++KH + V NHK +T +A
Sbjct: 103 GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
Query: 128 GKMAFTMIK-KDPEP-----IRYNNKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLI 181
G+ A ++K +PE +R N + ++H A Q + +LE + D +
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQAD-V 96
Query: 182 NVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQ 234
N+ D PL AA GH ++ L S V + G + LA G+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 225 PLHLA-----SQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQP 279
PL LA S G+ +++ +++ D +++ LH A GH ++V F++
Sbjct: 35 PLPLALLLDSSLEGEFDLVQRIIYEV-DDPSLPNDEGITALHNAVCAGHTEIVKFLV--- 90
Query: 280 EVEDLINSSDVDGNTPLHLAAINNHFNIILVLARN 314
+ +N++D DG TPLH AA N+ + L +
Sbjct: 91 QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 105/253 (41%), Gaps = 28/253 (11%)
Query: 40 TALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGNGN 99
T LH+AA + +V +L+H +D V + P+H A G++ ++ ++ HG
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLK-HGACV 117
Query: 100 NTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPN------ 153
N D TPLH A K ++ ++ +P N K +
Sbjct: 118 NA---------MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE 168
Query: 154 ---NLTLL---HSAIIKSQFVVMAKILEA-KRDLINVRD-ERNRNPLRYAAALGH--FKI 203
LT HS + ++ +AK+ + ++IN + + + L A A H K
Sbjct: 169 LRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQ 228
Query: 204 ACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLA 263
L + V + + + +PLH+A++ ++E +LH + + +D+ + LH A
Sbjct: 229 VAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVME-VLHKHGAKMNALDSLGQTALHRA 287
Query: 264 AQNGHADVVVFIL 276
A GH +L
Sbjct: 288 ALAGHLQTCRLLL 300
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 225 PLHL---ASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEV 281
PL L +S G+ +++ +++ D +++ LH A GH ++V F++ Q V
Sbjct: 37 PLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLV-QFGV 94
Query: 282 EDLINSSDVDGNTPLHLAAINNHFNIILVLARN 314
+N++D DG TPLH AA N+ + L +
Sbjct: 95 N--VNAADSDGWTPLHCAASCNNVQVCKFLVES 125
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
D G + +H A++ G L L+ LL D + DN+ LHLAA+ GH VV F++K
Sbjct: 67 DRTGNAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 253 DNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLA 312
D ++H AA+ G D + +L E + +N D +GN PLHLAA H ++ L
Sbjct: 67 DRTGNAVIHDAARAGFLDTLQTLL---EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 313 RNMS 316
++ +
Sbjct: 124 KHTA 127
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 11 ALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNH 70
A R G+ D ++ + + ++ G+ LH+AA+ GH +V ++KH + V NH
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDNE-GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH 135
Query: 71 KSETPMHVA 79
K +T +A
Sbjct: 136 KGDTACDLA 144
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
D G + +H A++ G L L+ LL + D + DN+ LHLAA+ GH VV F++K
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLENQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 259 ILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLARNMS 316
++H AA+ G D + +L E + +N D +GN PLHLAA H ++ L ++ +
Sbjct: 73 VIHDAARAGFLDTLQTLL---ENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 38 GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVA 79
G+ LH+AA+ GH +V ++KH + V NHK +T +A
Sbjct: 103 GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 77/196 (39%), Gaps = 38/196 (19%)
Query: 104 FDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAII 163
D ++ D GNT LH +V + + ++ + N+A P LT L A +
Sbjct: 100 LDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL--ATL 157
Query: 164 KSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDDSLVYQHDCNGQ 223
K+Q + + + IN + + GQ
Sbjct: 158 KTQDDIETVLQLFRLGNINAKASQ---------------------------------AGQ 184
Query: 224 SPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPEVED 283
+ L LA +G++ +++ LL D + D+ L A ++GH ++ +L P +
Sbjct: 185 TALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD- 242
Query: 284 LINSSDVDGNTPLHLA 299
I+ +D DG+T L +A
Sbjct: 243 -ISLTDRDGSTALMVA 257
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 8 LFRALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSV 67
L A+ HG D V+ + + +G TAL A GH+ + +L S +S+
Sbjct: 187 LMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISL 245
Query: 68 PNHKSETPMHVAARAGNFGAAQIF 91
+ T + VA AG A +
Sbjct: 246 TDRDGSTALMVALDAGQSEIASML 269
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 35 SQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMR 93
+++G TALH+AA G+ ++ +++ + D V++ ++ TP+H AA G A +I +
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVE 253
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 74/190 (38%), Gaps = 31/190 (16%)
Query: 153 NNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDEDD 212
+ LT LH A I V M K L IN D PL AA+ G+ IA L +
Sbjct: 72 DGLTALHQACIDDN-VDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG- 129
Query: 213 SLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNI------------- 259
+ V + G +PL +A + +L+N ++ IE + I
Sbjct: 130 AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH 189
Query: 260 -------------LHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFN 306
LH+AA G+ +V+ ++ Q + +N D DG TPLH AA
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLI-QARYD--VNIKDYDGWTPLHAAAHWGKEE 246
Query: 307 IILVLARNMS 316
+L N+
Sbjct: 247 ACRILVENLC 256
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
D G + +H A++ G L L+ LL D + DN+ LHLAA+ GH VV F++K
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 253 DNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLA 312
D ++H AA+ G D + +L E + +N D +GN PLHLAA H ++ L
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLL---EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 313 RNMS 316
++ +
Sbjct: 124 KHTA 127
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 11 ALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNH 70
A R G+ D ++ + + ++ G+ LH+AA+ GH +V ++KH + V NH
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDNE-GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH 135
Query: 71 KSETPMHVA 79
K +T +A
Sbjct: 136 KGDTACDLA 144
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 219 DCNGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILK 277
D G + +H A++ G L L+ LL D + DN+ LHLAA+ GH VV F++K
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 253 DNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLHLAAINNHFNIILVLA 312
D ++H AA+ G D + +L E + +N D +GN PLHLAA H ++ L
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLL---EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 313 RNMS 316
++ +
Sbjct: 124 KHTA 127
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 11 ALRHGYTDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNH 70
A R G+ D ++ + + ++ G+ LH+AA+ GH +V ++KH + V NH
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDNE-GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH 135
Query: 71 KSETPMHVAARAGNFGAAQIFMRPHGNGNNT 101
K +T +A G + M+ +G G T
Sbjct: 136 KGDTACDLARLYGRNEVVSL-MQANGAGGAT 165
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 12/130 (9%)
Query: 6 HKLFRALRHGYTDKVREFARLNGNRILGTSQN--GDTALHIAARFGHEILVMEILKHQSD 63
K+ A R G TD+VR RL + T QN G TALH+A +FG ++ K+ +
Sbjct: 22 EKIHVAARKGQTDEVR---RLIETGVSPTIQNRFGCTALHLACKFG----CVDTAKYLAS 74
Query: 64 LVSVPN-HKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNA 122
+ V + + P+H+A A + G + +L + DE + +
Sbjct: 75 VGEVHSLWHGQKPIHLAVXANKTDLVVALV--EGAKERGQXPESLLNECDEREVNEIGSH 132
Query: 123 VRKCDGKMAF 132
V+ C G+ A
Sbjct: 133 VKHCKGQTAL 142
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 223 QSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ-PE- 280
+SPL LA++ + L LL + LH+AA + + + +++ PE
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 281 VEDLINSSDVDGNTPLHLAAINNHFNII-LVLARNMS 316
V + + S +G T LH+A IN + N++ +LAR S
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGAS 100
>pdb|1HQL|A Chain A, The Xenograft Antigen In Complex With The B4 Isolectin Of
Griffonia Simplicifolia Lectin-1
pdb|1HQL|B Chain B, The Xenograft Antigen In Complex With The B4 Isolectin Of
Griffonia Simplicifolia Lectin-1
Length = 257
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 201 FKIACRLSDEDDSLVYQHDCNGQS-PLHLASQNGQLSILENLLHS--YPDSIEFIDNKNR 257
F SD +DS+++Q D N + L L N + L+ Y D ++ DNK
Sbjct: 7 FTFPNFWSDVEDSIIFQGDANTTAGTLQLCKTNQYGTPLQWSAGRALYSDPVQLWDNKTE 66
Query: 258 NILHLAAQ---------NGHADVVVFILKQPE 280
++ + NG AD + F L P+
Sbjct: 67 SVASFYTEFTFFLKITGNGPADGLAFFLAPPD 98
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 221 NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQPE 280
+G +PL LA++ +LE+L++S+ D + +D+ ++ LH AA + D V +LK
Sbjct: 14 DGTTPLILAARLALEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 72
Query: 281 VEDLINSSDVDGNTPLHLAAINNHFNIILVL 311
+D+ N+ + TPL LAA + VL
Sbjct: 73 NKDMQNNKE---ETPLFLAAREGSYETAKVL 100
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 38 GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRPHGN 97
G +ALH AA + + +LK+ ++ + N+K ETP+ +AAR G++ A++ + N
Sbjct: 48 GKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNKEETPLFLAAREGSYETAKVLLDHFAN 106
Query: 98 GNNTGTFDDILRKRDEEGNTPLHNAVRKCD 127
+ T D + RD H+ VR D
Sbjct: 107 RDITDHMDRL--PRDIAQERMHHDIVRLLD 134
>pdb|1GNZ|A Chain A, Lectin I-B4 From Griffonia Simplicifolia (Gs I-B4)metal
Free Form
Length = 257
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 201 FKIACRLSDEDDSLVYQHDCNGQS-PLHLASQNGQLSILENLLHS--YPDSIEFIDNKNR 257
F SD +DS+++Q D N + L L N + L+ Y D ++ DNK
Sbjct: 7 FTFPNFWSDVEDSIIFQGDANTTAGTLQLCKTNQYGTPLQWSAGRALYSDPVQLWDNKTE 66
Query: 258 NILHLAAQ---------NGHADVVVFILKQPE 280
++ + NG AD + F L P+
Sbjct: 67 SVASFYTEFTFFLKITGNGPADGLAFFLAPPD 98
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 221 NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
G+ PLH A+ GQL ILE LL D I D + L A GH V +L +
Sbjct: 39 GGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGHVSCVKLLLSK 95
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 221 NGQSPLHLASQNGQLSILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADVVVFILKQ 278
G+ PLH A+ GQL ILE LL D I D + L A GH V +L +
Sbjct: 34 GGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGHVSCVKLLLSK 90
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 146 NKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIAC 205
N G +N T L A + + +L+ + +N D R PL +A LGH +AC
Sbjct: 227 NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHHATILGHTGLAC 285
Query: 206 RLSDEDDSLVYQHDCNGQSPLHLASQNGQLSIL 238
L + D G+ PL +A + I+
Sbjct: 286 LFLKRGADLGAR-DSEGRDPLTIAMETANADIV 317
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 146 NKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIAC 205
N G +N T L A + + +L+ + +N D R PL +A LGH +AC
Sbjct: 227 NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHHATILGHTGLAC 285
Query: 206 RLSDEDDSLVYQHDCNGQSPLHLASQNGQLSIL 238
L + D G+ PL +A + I+
Sbjct: 286 LFLKRGADLGAR-DSEGRDPLTIAMETANADIV 317
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 146 NKAKQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIAC 205
N G +N T L A + + +L+ + +N D R PL +A LGH +AC
Sbjct: 227 NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHHATILGHTGLAC 285
Query: 206 RLSDEDDSLVYQHDCNGQSPLHLASQNGQLSIL 238
L + D G+ PL +A + I+
Sbjct: 286 LFLKRGADLGAR-DSEGRDPLTIAMETANADIV 317
>pdb|1VF5|C Chain C, Crystal Structure Of Cytochrome B6f Complex From
M.Laminosus
pdb|1VF5|P Chain P, Crystal Structure Of Cytochrome B6f Complex From
M.Laminosus
pdb|2D2C|C Chain C, Crystal Structure Of Cytochrome B6f Complex With Dbmib
From M. Laminosus
pdb|2D2C|P Chain P, Crystal Structure Of Cytochrome B6f Complex With Dbmib
From M. Laminosus
pdb|2E74|C Chain C, Crystal Structure Of The Cytochrome B6f Complex From
M.Laminosus
pdb|2E75|C Chain C, Crystal Structure Of The Cytochrome B6f Complex With
2-nonyl-4- Hydroxyquinoline N-oxide (nqno) From
M.laminosus
pdb|2E76|C Chain C, Crystal Structure Of The Cytochrome B6f Complex With
Tridecyl- Stigmatellin (Tds) From M.Laminosus
pdb|4H0L|C Chain C, Cytochrome B6f Complex Crystal Structure From
Mastigocladus Laminosus With N-side Inhibitor Nqno
pdb|4H13|C Chain C, Crystal Structure Of The Cytochrome B6f Complex From
Mastigocladus Laminosus With Tds
Length = 289
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Query: 68 PNHKSETPMHVAARAGNFGA----AQIFMRPHGNGNN------TGTFDDILRKRDEEGNT 117
PN ++ +H A + GA QI+ + NN TGT I ++ DE GN
Sbjct: 134 PNPTTDKNIHFGKYAIHLGANRGRGQIYPTGEKSNNNVFTASATGTITKIAKEEDEYGNV 193
Query: 118 PLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLT 156
+++ GK I PE I +A + LT
Sbjct: 194 KYQVSIQTDSGKTVVDTIPAGPELIVSEGQAVKAGEALT 232
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 67/177 (37%), Gaps = 41/177 (23%)
Query: 140 EPIRYNNKA------KQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINV-RDERNRNPL 192
E +R+N+K +G T L A++ Q V A I+ L+ + +D N PL
Sbjct: 23 EYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP----LLQIDKDSGNPKPL 78
Query: 193 RYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPD----- 247
A F YQ G S LH+A + L ++ L+ + D
Sbjct: 79 VNAQCTDEF--------------YQ----GHSALHIAIEKRSLQCVKLLVENGADVHLRA 120
Query: 248 SIEFIDNKNRNI-------LHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLH 297
F L LAA DVV ++L+ P + ++D GNT LH
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLH 177
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 260 LHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLH-LAAI--NNHFNIILV 310
L LAA DVV ++L+ P + ++D GNT LH L I N+ NI LV
Sbjct: 145 LSLAACTKQWDVVSYLLENPHQPASLQATDSQGNTVLHALVXISDNSAENIALV 198
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 87/225 (38%), Gaps = 34/225 (15%)
Query: 36 QNGDTALHIAARFGHEILV---MEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFM 92
++GDT LHIA G+ V + + + + + N+ +TP+H+A ++ +
Sbjct: 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 66
Query: 93 RPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGK--MAFTMIKKDPEPIRYNNKAKQ 150
G L D G T H A C+ + + P + +A+
Sbjct: 67 -------TAGASPMAL---DRHGQTAAHLA---CEHRSPTCLRALLDSAAPGTLDLEARN 113
Query: 151 GPNNLTLLHSAIIKSQFVVMAKILEAKRDLINVRDERNRNPLRYAAALGHFKIACRLSDE 210
+ LT LH A+ + +LE D+ V + R+PL +A +
Sbjct: 114 Y-DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV------ 166
Query: 211 DDSLVYQHDCN-------GQSPLHLASQNGQLSILENLLHSYPDS 248
L+ QH N G S LH AS G L ++ L+ S DS
Sbjct: 167 --QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS 209
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 67/177 (37%), Gaps = 41/177 (23%)
Query: 140 EPIRYNNKA------KQGPNNLTLLHSAIIKSQFVVMAKILEAKRDLINV-RDERNRNPL 192
E +R+N+K +G T L A++ Q V A I+ L+ + +D N PL
Sbjct: 36 EYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP----LLQIDKDSGNPKPL 91
Query: 193 RYAAALGHFKIACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPD----- 247
A F YQ G S LH+A + L ++ L+ + D
Sbjct: 92 VNAQCTDEF--------------YQ----GHSALHIAIEKRSLQCVKLLVENGADVHLRA 133
Query: 248 SIEFIDNKNRNI-------LHLAAQNGHADVVVFILKQPEVEDLINSSDVDGNTPLH 297
F L LAA DVV ++L+ P + ++D GNT LH
Sbjct: 134 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLH 190
>pdb|2AJA|A Chain A, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21.
pdb|2AJA|B Chain B, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21
Length = 376
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 205 CRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPDSI-EFIDNKNRNILHLA 263
C L D+ + N Q+ LA++NG L +L L P I I +N + LA
Sbjct: 112 CLLLTSDEIVKVIQAENYQA-FRLAAENGHLHVLNRLCELAPTEIXAXIQAENYHAFRLA 170
Query: 264 AQNGHADVV 272
A+NGH V+
Sbjct: 171 AENGHLHVL 179
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/44 (22%), Positives = 26/44 (59%)
Query: 250 EFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGN 293
+++D+ R +L + A D+++F+ + E+ED + ++G+
Sbjct: 285 DYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGD 328
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/44 (22%), Positives = 26/44 (59%)
Query: 250 EFIDNKNRNILHLAAQNGHADVVVFILKQPEVEDLINSSDVDGN 293
+++D+ R +L + A D+++F+ + E+ED + ++G+
Sbjct: 285 DYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGD 328
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 22 EFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAAR 81
+F NG + + +G+TALH AA + + +LK ++ LV N ET + +A +
Sbjct: 191 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA-LVGTVNEAGETALDIARK 249
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 23/124 (18%)
Query: 17 TDKVREFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPN------- 69
TD +++F + + G TALHIA + LV ++++ +D+ + N
Sbjct: 83 TDSLKQFVNAS---YTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKT 139
Query: 70 ------HKSETPMHVAARAGNFGAAQIFMRPHGNGNNTGTFDDILRKRDEEGNTPLHNAV 123
+ E P+ +AA + ++ N+ DI RD GNT LH V
Sbjct: 140 KGRPGFYFGELPLSLAACTNQLAIVKFLLQ------NSWQPADI-SARDSVGNTVLHALV 192
Query: 124 RKCD 127
D
Sbjct: 193 EVAD 196
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 37 NGDTALHIAARFGHEILVMEILKHQSD 63
NGDT L+IAAR G+ +V +L + +D
Sbjct: 282 NGDTCLNIAARLGNISIVDALLDYGAD 308
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 14/166 (8%)
Query: 112 DEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKAKQGPNNLTLLHSAIIKSQFVVMA 171
D EGNTPL+ AV D ++A +I + + I N P L++ + + ++A
Sbjct: 36 DTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSP----YLYAG-AQGRTEILA 89
Query: 172 KILEAKRDLINVRDERNRNPLRYAAALGHFK-IACRLSDEDDSLVYQHDCNGQSPLHLA- 229
+L+ +N + N L AA GH + L D + + +Q+D G + L A
Sbjct: 90 YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDF-GYTALIEAV 148
Query: 230 --SQNGQL--SILENLLHSYPDSIEFIDNKNRNILHLAAQNGHADV 271
+ QL I++ L+ + D DN R + A Q G+ ++
Sbjct: 149 GLREGNQLYQDIVKLLMENGADQ-SIKDNSGRTAMDYANQKGYTEI 193
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 22 EFARLNGNRILGTSQNGDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAAR 81
+F NG + + +G+TALH AA + + +LK ++ LV N ET + +A +
Sbjct: 210 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA-LVGTVNEAGETALDIARK 268
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 38 GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRP 94
G TALH+AA G E +E L V V T +H+A R A + ++P
Sbjct: 45 GQTALHLAAILG-EASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQP 100
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 88/224 (39%), Gaps = 23/224 (10%)
Query: 35 SQNGDTALHIAARFGHEILVMEILKHQS--DLVSVPNHKSETPMHVAARAGNFGAAQIFM 92
+++GDTALH+A HE + +L + + + + N +T +H+AA G A
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA---ILGEASTVE 62
Query: 93 RPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKA---- 148
+ + G ++ +R G+T LH A R A +++ P R +
Sbjct: 63 KLYAAGAGV-----LVAERG--GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115
Query: 149 KQGPNNLTLLHSAIIKSQFVVMAKILEAKRD-----LINVRDERNRNPLRYAAALGHFKI 203
Q T A + SQ + E RD + + PL A ++
Sbjct: 116 SQDCTPDTSHAPAAVDSQ--PNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEM 173
Query: 204 ACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPD 247
L D L G++PLHLA + S+LE LL + D
Sbjct: 174 VRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 38 GDTALHIAARFGHEILVMEILKHQSDLVSVPNHKSETPMHVAARAGNFGAAQIFMRP 94
G TALH+AA G E +E L V V T +H+A R A + ++P
Sbjct: 45 GQTALHLAAILG-EASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQP 100
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 88/224 (39%), Gaps = 23/224 (10%)
Query: 35 SQNGDTALHIAARFGHEILVMEILKHQS--DLVSVPNHKSETPMHVAARAGNFGAAQIFM 92
+++GDTALH+A HE + +L + + + + N +T +H+AA G A
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA---ILGEASTVE 62
Query: 93 RPHGNGNNTGTFDDILRKRDEEGNTPLHNAVRKCDGKMAFTMIKKDPEPIRYNNKA---- 148
+ + G ++ +R G+T LH A R A +++ P R +
Sbjct: 63 KLYAAGAGV-----LVAERG--GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115
Query: 149 KQGPNNLTLLHSAIIKSQFVVMAKILEAKRD-----LINVRDERNRNPLRYAAALGHFKI 203
Q T A + SQ + E RD + + PL A ++
Sbjct: 116 SQDCTPDTSHAPAAVDSQ--PNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEM 173
Query: 204 ACRLSDEDDSLVYQHDCNGQSPLHLASQNGQLSILENLLHSYPD 247
L D L G++PLHLA + S+LE LL + D
Sbjct: 174 VRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
>pdb|1BAG|A Chain A, Alpha-Amylase From Bacillus Subtilis Complexed With
Maltopentaose
Length = 425
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 28 GNRILGTSQNGDTALHIAARFGHEILVMEILKHQS-DLVSVPNHKSETP 75
GNR LGT Q A +G +++V ++ H + D ++ N P
Sbjct: 70 GNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKSIP 118
>pdb|1UA7|A Chain A, Crystal Structure Analysis Of Alpha-Amylase From Bacillus
Subtilis Complexed With Acarbose
Length = 422
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 28 GNRILGTSQNGDTALHIAARFGHEILVMEILKHQS-DLVSVPNHKSETP 75
GNR LGT Q A +G +++V ++ H + D ++ N P
Sbjct: 67 GNRYLGTEQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKSIP 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,712,862
Number of Sequences: 62578
Number of extensions: 413405
Number of successful extensions: 2165
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1142
Number of HSP's gapped (non-prelim): 568
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)