BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048249
(426 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 211 bits (538), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 142/414 (34%), Positives = 209/414 (50%), Gaps = 34/414 (8%)
Query: 9 EIIKPSSPTPQHQSTYKLSIIDQLTPNVYFSIILLYSNAGEST---AKTSDHLKKSLSNT 65
E+I PSSPTPQ YK+S +DQL + IL Y N +S A+TS HLK+SLS
Sbjct: 11 ELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQHLKQSLSKV 70
Query: 66 LTHYYPLAGQLKYDQLIVDCNDQGVPFIEAHVANDMRQLLK-IPNIDVLEQLLPFKPHEG 124
LTH+YPLAG++ + VDCND GVPF+EA V + Q ++ + ++ L+Q LP + G
Sbjct: 71 LTHFYPLAGRINVNS-SVDCNDSGVPFVEARVQAQLSQAIQNVVELEKLDQYLPSAAYPG 129
Query: 125 FDSDRSN---LTLQVNYFGCGGMAIGLCFRHKVIDATTAAFFVKNWGVIARGAGEIK--- 178
+ + L +++++F CGG AIG+ HK+ D + A F+ W RG EI
Sbjct: 130 GKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCRGETEIVLPN 189
Query: 179 -DLIIDHASLFPARDLSCLAKSVDEEFLKPESETKRFVFDGPTIASF--QETFTSFERRP 235
DL H FP D + + V +E + KRFVFD I + Q + S E+
Sbjct: 190 FDLAARH---FPPVDNTPSPELVPDENVV----MKRFVFDKEKIGALRAQASSASEEKNF 242
Query: 236 TRFEVVSAVILGALITATRESDDESNVPERLDTIISVNLRQRMNPPFPEHCMGNIISGGL 295
+R ++V A I +I TR N + + +VNLR RMNPP P + MGNI +
Sbjct: 243 SRVQLVVAYIWKHVIDVTRAKYGAKN---KFVVVQAVNLRSRMNPPLPHYAMGNIATLLF 299
Query: 296 VYWPLEKKVDYGCLAKEIHESIKKVDDQFARKFYGDAEFLNLPRLAGAEDVKKREFW-VT 354
E D+ L + S++K +D + L + +++ +E T
Sbjct: 300 AAVDAEWDKDFPDLIGPLRTSLEKTEDDHNHEL--------LKGMTCLYELEPQELLSFT 351
Query: 355 SWCKTPLYEADFGWGNPKWA-GNSMRLNQITVFFDSSDGEGVEAWVGLPRKDMA 407
SWC+ Y+ DFGWG P A + + D+ G+GVEAW+ + +MA
Sbjct: 352 SWCRLGFYDLDFGWGKPLSACTTTFPKRNAALLMDTRSGDGVEAWLPMAEDEMA 405
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 121 bits (303), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 110/422 (26%), Positives = 187/422 (44%), Gaps = 78/422 (18%)
Query: 1 MDLQITCTEIIKPSSPTPQHQ---STYKLSIIDQLTPNVYFSIILLYSNAGESTAKTSDH 57
M +++ + +++P+ TP S L + + TP+VYF Y G S +
Sbjct: 6 MKIEVKESTMVRPAQETPGRNLWNSNVDLVVPNFHTPSVYF-----YRPTGSSNFFDAKV 60
Query: 58 LKKSLSNTLTHYYPLAGQLKYDQ---LIVDCNDQGVPFIEAH---VANDMRQLLKIPNID 111
LK +LS L +YP+AG+LK D+ + ++CN +GV F+EA V +D P ++
Sbjct: 61 LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDF--APTLE 118
Query: 112 VLEQLLPFKPHEGFDSDRSNLTLQVNYFGCGGMAIGLCFRHKVIDATTAAFFVKNWGVIA 171
L +L+P + S + L LQV YF CGG+++G+ RH D + F+ +W +A
Sbjct: 119 -LRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMA 177
Query: 172 RGAGEIKDLIIDHASLFPARD----------------LSCLAKSVDEEFLKPESETKRFV 215
RG ID +L ARD L+ ++ + + PE+ F
Sbjct: 178 RGLDVTLPPFIDR-TLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSV-PETAVSIFK 235
Query: 216 FDGPTIASFQE---------TFTSFERRPTRFEVVSAVILGALITATRESDDESNVPERL 266
I++ + +++S+E + V A E D + +
Sbjct: 236 LTREQISALKAKSKEDGNTISYSSYEM------LAGHVWRCACKARGLEVDQGTKL---- 285
Query: 267 DTIISVNLRQRMNPPFPEHCMGNI--------ISGGLVYWPLEKKVDYGCLAKEIHESIK 318
I+ + R R+ P P GN+ I+G L + P+ A +IH+++
Sbjct: 286 --YIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYA------ASKIHDALA 337
Query: 319 KVDDQFARKFYGDAEFLNL-PRLA----GAEDVKKREFWVTSWCKTPLYEADFGWGNPKW 373
++D+ + R ++L L P L GA K +TSW + P+++ADFGWG P +
Sbjct: 338 RMDNDYLRSAL---DYLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIF 394
Query: 374 AG 375
G
Sbjct: 395 MG 396
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 110/422 (26%), Positives = 186/422 (44%), Gaps = 78/422 (18%)
Query: 1 MDLQITCTEIIKPSSPTPQHQ---STYKLSIIDQLTPNVYFSIILLYSNAGESTAKTSDH 57
M +++ + +++P+ TP S L + + TP+VYF Y G S +
Sbjct: 3 MKIEVKESTMVRPAQETPGRNLWNSNVDLVVPNFHTPSVYF-----YRPTGSSNFFDAKV 57
Query: 58 LKKSLSNTLTHYYPLAGQLKYDQ---LIVDCNDQGVPFIEAH---VANDMRQLLKIPNID 111
LK +LS L +YP+AG+LK D+ + ++CN +GV F+EA V +D P ++
Sbjct: 58 LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDF--APTLE 115
Query: 112 VLEQLLPFKPHEGFDSDRSNLTLQVNYFGCGGMAIGLCFRHKVIDATTAAFFVKNWGVIA 171
L +L+P + S + L LQV YF CGG+++G+ RH D + F+ +W +A
Sbjct: 116 -LRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMA 174
Query: 172 RGAGEIKDLIIDHASLFPARD----------------LSCLAKSVDEEFLKPESETKRFV 215
RG ID +L ARD L ++ + + PE+ F
Sbjct: 175 RGLDVTLPPFIDR-TLLRARDPPQPQFQHIEYQPPPALKVSPQTAKSDSV-PETAVSIFK 232
Query: 216 FDGPTIASFQE---------TFTSFERRPTRFEVVSAVILGALITATRESDDESNVPERL 266
I++ + +++S+E + V A E D + +
Sbjct: 233 LTREQISALKAKSKEDGNTISYSSYEM------LAGHVWRCACKARGLEVDQGTKL---- 282
Query: 267 DTIISVNLRQRMNPPFPEHCMGNI--------ISGGLVYWPLEKKVDYGCLAKEIHESIK 318
I+ + R R+ P P GN+ I+G L + P+ A +IH+++
Sbjct: 283 --YIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYA------ASKIHDALA 334
Query: 319 KVDDQFARKFYGDAEFLNL-PRLA----GAEDVKKREFWVTSWCKTPLYEADFGWGNPKW 373
++D+ + R ++L L P L GA K +TSW + P+++ADFGWG P +
Sbjct: 335 RMDNDYLRSAL---DYLELQPDLKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIF 391
Query: 374 AG 375
G
Sbjct: 392 MG 393
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 109/422 (25%), Positives = 186/422 (44%), Gaps = 78/422 (18%)
Query: 1 MDLQITCTEIIKPSSPTPQHQ---STYKLSIIDQLTPNVYFSIILLYSNAGESTAKTSDH 57
M +++ + +++P+ TP S L + + TP+VYF Y G S +
Sbjct: 6 MKIEVKESTMVRPAQETPGRNLWNSNVDLVVPNFHTPSVYF-----YRPTGSSNFFDAKV 60
Query: 58 LKKSLSNTLTHYYPLAGQLKYDQ---LIVDCNDQGVPFIEAH---VANDMRQLLKIPNID 111
LK +LS L +YP+AG+LK D+ + ++CN +GV F+EA V +D P ++
Sbjct: 61 LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDF--APTLE 118
Query: 112 VLEQLLPFKPHEGFDSDRSNLTLQVNYFGCGGMAIGLCFRHKVIDATTAAFFVKNWGVIA 171
L +L+P + S + L LQV YF GG+++G+ RH D + F+ +W +A
Sbjct: 119 -LRRLIPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMA 177
Query: 172 RGAGEIKDLIIDHASLFPARD----------------LSCLAKSVDEEFLKPESETKRFV 215
RG ID +L ARD L+ ++ + + PE+ F
Sbjct: 178 RGLDVTLPPFIDR-TLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSV-PETAVSIFK 235
Query: 216 FDGPTIASFQE---------TFTSFERRPTRFEVVSAVILGALITATRESDDESNVPERL 266
I++ + +++S+E + V A E D + +
Sbjct: 236 LTREQISALKAKSKEDGNTISYSSYEM------LAGHVWRCACKARGLEVDQGTKL---- 285
Query: 267 DTIISVNLRQRMNPPFPEHCMGNI--------ISGGLVYWPLEKKVDYGCLAKEIHESIK 318
I+ + R R+ P P GN+ I+G L + P+ A +IH+++
Sbjct: 286 --YIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYA------ASKIHDALA 337
Query: 319 KVDDQFARKFYGDAEFLNL-PRLA----GAEDVKKREFWVTSWCKTPLYEADFGWGNPKW 373
++D+ + R ++L L P L GA K +TSW + P+++ADFGWG P +
Sbjct: 338 RMDNDYLRSAL---DYLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIF 394
Query: 374 AG 375
G
Sbjct: 395 MG 396
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 138/356 (38%), Gaps = 56/356 (15%)
Query: 57 HLKKSLSNTLTHYYPLAGQL--------KYDQLIVDCNDQGVPFIEAHVANDMRQLL--K 106
++K SLS TL H+YP G+L K + V+ + V F E ++ D+ +L
Sbjct: 64 NIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNL--DLNELTGNH 121
Query: 107 IPNIDVLEQLLPFKPHEGFDSDRSNLTL---QVNYFGCGGMAIGLCFRHKVIDATTAAFF 163
N D L+P SD + L QV F G+AIG+ H + DA+T F
Sbjct: 122 PRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCF 181
Query: 164 VKNWGVIAR-----------GAGEIKDLIIDHASLFPARDLSCLAKSVDEEF----LKPE 208
+K W IAR G + D II + L A +S +E++ L
Sbjct: 182 LKAWTSIARSGNNDESFLANGTRPLYDRIIKYPMLDEAYLKRAKVESFNEDYVTQSLAGP 241
Query: 209 SETKR--FVFDGPTIASFQETFTSFERRPT-----RFEVVSAVILGALITATRESDDESN 261
S+ R F+ I ++ + + PT F V A I + + +
Sbjct: 242 SDKLRATFILTRAVINQLKDRVLA--QLPTLEYVSSFTVACAYIWSCIAKSRNDKLQLFG 299
Query: 262 VPERLDTIISVNLRQRMNPPFPEHCMGNIISGGLVYWP---LEKKVDYGCLAKEIHESIK 318
P ++ R RM PP P GN + G L K + AK I E++
Sbjct: 300 FP--------IDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLH 351
Query: 319 KVDDQFARKFYGD--AEFLNLPRLAGAEDVKKREFWVTSWCKTPLYEADFGWGNPK 372
K + D F +L +E + WV+ K Y+ DFGWG PK
Sbjct: 352 KTLTDYKDGVLKDDMESFNDLV----SEGMPTTMTWVSGTPKLRFYDMDFGWGKPK 403
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 92/356 (25%), Positives = 136/356 (38%), Gaps = 56/356 (15%)
Query: 57 HLKKSLSNTLTHYYPLAGQL--------KYDQLIVDCNDQGVPFIEAHVANDMRQLL--K 106
++K SLS TL H+YP G+L K + V+ + V F E ++ D+ +L
Sbjct: 64 NIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNL--DLNELTGNH 121
Query: 107 IPNIDVLEQLLPFKPHEGFDSDRSNLTL---QVNYFGCGGMAIGLCFRHKVIDATTAAFF 163
N D L+P SD + L QV F G+AIG+ H + DA+T F
Sbjct: 122 PRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCF 181
Query: 164 VKNWGVIAR-----------GAGEIKDLIIDHASLFPARDLSCLAKSVDEEF----LKPE 208
+K W IAR G + D II + L A +S +E++ L
Sbjct: 182 LKAWTSIARSGNNDESFLANGTRPLYDRIIKYPXLDEAYLKRAKVESFNEDYVTQSLAGP 241
Query: 209 SETKR--FVFDGPTIASFQETFTSFERRPT-----RFEVVSAVILGALITATRESDDESN 261
S+ R F+ I ++ + + PT F V A I + + +
Sbjct: 242 SDKLRATFILTRAVINQLKDRVLA--QLPTLEYVSSFTVACAYIWSCIAKSRNDKLQLFG 299
Query: 262 VPERLDTIISVNLRQRMNPPFPEHCMGNIISGGLVYWP---LEKKVDYGCLAKEIHESIK 318
P ++ R R PP P GN + G L K + AK I E++
Sbjct: 300 FP--------IDRRARXKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLH 351
Query: 319 KVDDQFARKFYGD--AEFLNLPRLAGAEDVKKREFWVTSWCKTPLYEADFGWGNPK 372
K + D F +L +E WV+ K Y+ DFGWG PK
Sbjct: 352 KTLTDYKDGVLKDDXESFNDLV----SEGXPTTXTWVSGTPKLRFYDXDFGWGKPK 403
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 90/362 (24%), Positives = 135/362 (37%), Gaps = 67/362 (18%)
Query: 58 LKKSLSNTLTHYYPLAGQLKYDQLIVDCNDQGVPFIEAHVANDMRQLLKIPNIDVLEQLL 117
LK SLS TL +Y PLAG + Q + G P + N + + + D L+
Sbjct: 60 LKDSLSLTLKYYLPLAGNVACPQ-----DWSGYPELRYVTGNSVSVIFSESDXD-FNYLI 113
Query: 118 PFKPHEGFD-----------SDRSN------LTLQVNYFGCGGMAIGLCFRHKVIDATTA 160
+ P D D L +QV F G++IG H D T
Sbjct: 114 GYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATI 173
Query: 161 AFFVKNWGVIARGAGEIKDLIIDHASLFP---ARDLSCLAKSVDEEFLK----------- 206
FV+ W ++ + G+ + L + + +D + + S+ E K
Sbjct: 174 VKFVRAWALLNKFGGDEQFLANEFIPFYDRSVIKDPNGVGXSIWNEXKKYKHXXKXSDVV 233
Query: 207 --PESETKRFVFDGPTIASFQETFTSFERRP-----TRFEVVSAVILGALI---TATRES 256
P+ F+ I + + RRP T F V A + +I AT E
Sbjct: 234 TPPDKVRGTFIITRHDIGKLKNLVLT--RRPKLTHVTSFTVTCAYVWTCIIKSEAATGEE 291
Query: 257 DDESNVPERLDTIISVNLRQRMNPPFPEHCMGNIISGGLVYWPLEKKVDYGCLAKEIHES 316
DE N E + + R + NPP P GN + G Y ++VD KE
Sbjct: 292 IDE-NGXEFFGC--AADCRAQFNPPLPPSYFGNALVG---YVARTRQVDLA--GKEGFTI 343
Query: 317 IKKVDDQFARKFYGDAEFLNLPRLAGA------EDVKKREFWVTSWCKTPLYEADFGWGN 370
++ + RK D E++ L+G+ + KR V K LY ADFGWG
Sbjct: 344 AVELIGEAIRKRXKDEEWI----LSGSWFKEYDKVDAKRSLSVAGSPKLDLYAADFGWGR 399
Query: 371 PK 372
P+
Sbjct: 400 PE 401
>pdb|3J21|BB Chain b, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 130
Score = 29.6 bits (65), Expect = 3.0, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 331 DAEFLNLPRLAGAEDVKKREFWVTSWCKTPLYEADFGWGNPKWAGNSMRL 380
+ EF L R+ KK F W + P ++ D W PK + MRL
Sbjct: 3 EKEFKRLLRVRARLKRKKPRFLRQEWWRYPKFKNDPKWRRPKGIDSKMRL 52
>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk
Inhibitor For The Prevention Of Ischemia-Reperfusion
Injury
pdb|3TTI|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-930, An Orally
Active Anti-Fibrotic Jnk Inhibitor
Length = 464
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 300 LEKKVDYGCLAKEIHESIKKVDDQFARKFYGDAEFLNLPR 339
+K+VD +AK + S KVD+QF GD+ F L R
Sbjct: 24 FDKQVDVSYIAKHYNMSKSKVDNQFYSVEVGDSTFTVLKR 63
>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With
Mgamp-Pnp
Length = 423
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 300 LEKKVDYGCLAKEIHESIKKVDDQFARKFYGDAEFLNLPR 339
+K+VD +AK + S KVD+QF GD+ F L R
Sbjct: 24 FDKQVDVSYIAKHYNMSKSKVDNQFYSVEVGDSTFTVLKR 63
>pdb|3TRO|A Chain A, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant D171a
pdb|3TRO|B Chain B, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant D171a
Length = 354
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 22/123 (17%)
Query: 6 TCTEIIKPSSPTPQHQSTYKLSIIDQLTPNVYFSIILLYSNAGESTAKTSDHLKKSLSNT 65
+CT ++ +PTP++Q+ SI PN F L Y+ A+ D+ KK L
Sbjct: 79 SCTPALREGNPTPRYQALPLGSINSMGLPNNGFDFYLAYA------AEQHDYGKKPL--- 129
Query: 66 LTHYYPLAGQLKYDQLIVDCNDQGVPFIEAHVANDMRQLLKIPNIDVLEQLLPFKPHEGF 125
+ ++G L + + C E V ++ L PN+ P KP +
Sbjct: 130 ---FLSMSG-LSMRENVEMCKRLAAVATEKGVILELN--LSCPNV-------PGKPQVAY 176
Query: 126 DSD 128
D D
Sbjct: 177 DFD 179
>pdb|3TJX|A Chain A, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant H174a
pdb|3TJX|B Chain B, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase Mutant H174a
Length = 354
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 22/123 (17%)
Query: 6 TCTEIIKPSSPTPQHQSTYKLSIIDQLTPNVYFSIILLYSNAGESTAKTSDHLKKSLSNT 65
+CT ++ +PTP++Q+ SI PN F L Y+ A+ D+ KK L
Sbjct: 79 SCTPALREGNPTPRYQALPLGSINSMGLPNNGFDFYLAYA------AEQHDYGKKPL--- 129
Query: 66 LTHYYPLAGQLKYDQLIVDCNDQGVPFIEAHVANDMRQLLKIPNIDVLEQLLPFKPHEGF 125
+ ++G L + + C E V ++ L PN+ P KP +
Sbjct: 130 ---FLSMSG-LSMRENVEMCKRLAAVATEKGVILELN--LSCPNV-------PGKPQVAY 176
Query: 126 DSD 128
D D
Sbjct: 177 DFD 179
>pdb|3GYE|A Chain A, Didydroorotate Dehydrogenase From Leishmania Major
pdb|3GYE|B Chain B, Didydroorotate Dehydrogenase From Leishmania Major
pdb|3GZ3|A Chain A, Leishmania Major Dihydroorotate Dehydrogenase In Complex
Wit
pdb|3GZ3|B Chain B, Leishmania Major Dihydroorotate Dehydrogenase In Complex
Wit
pdb|4EF8|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With Phenyl Isothiocyanate
pdb|4EF8|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With Phenyl Isothiocyanate
pdb|4EF9|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 4-Nitrophenyl
Isothiocyanate
pdb|4EF9|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 4-Nitrophenyl
Isothiocyanate
Length = 354
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 22/123 (17%)
Query: 6 TCTEIIKPSSPTPQHQSTYKLSIIDQLTPNVYFSIILLYSNAGESTAKTSDHLKKSLSNT 65
+CT ++ +PTP++Q+ SI PN F L Y+ A+ D+ KK L
Sbjct: 79 SCTPALREGNPTPRYQALPLGSINSMGLPNNGFDFYLAYA------AEQHDYGKKPL--- 129
Query: 66 LTHYYPLAGQLKYDQLIVDCNDQGVPFIEAHVANDMRQLLKIPNIDVLEQLLPFKPHEGF 125
+ ++G L + + C E V ++ L PN+ P KP +
Sbjct: 130 ---FLSMSG-LSMRENVEMCKRLAAVATEKGVILELN--LSCPNV-------PGKPQVAY 176
Query: 126 DSD 128
D D
Sbjct: 177 DFD 179
>pdb|3MHU|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Nitroorotic Acid
pdb|3MHU|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Nitroorotic Acid
pdb|3MJY|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Aminoorotic Acid
pdb|3MJY|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Leishmania Major In Complex With 5-Aminoorotic Acid
pdb|3TQ0|A Chain A, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase In Complex With Fumarate
pdb|3TQ0|B Chain B, Crystal Structure Of Leishmania Major Dihydroorotate
Dehydrogenase In Complex With Fumarate
Length = 346
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 22/123 (17%)
Query: 6 TCTEIIKPSSPTPQHQSTYKLSIIDQLTPNVYFSIILLYSNAGESTAKTSDHLKKSLSNT 65
+CT ++ +PTP++Q+ SI PN F L Y+ A+ D+ KK L
Sbjct: 79 SCTPALREGNPTPRYQALPLGSINSMGLPNNGFDFYLAYA------AEQHDYGKKPL--- 129
Query: 66 LTHYYPLAGQLKYDQLIVDCNDQGVPFIEAHVANDMRQLLKIPNIDVLEQLLPFKPHEGF 125
+ ++G L + + C E V ++ L PN+ P KP +
Sbjct: 130 ---FLSMSG-LSMRENVEMCKRLAAVATEKGVILELN--LSCPNV-------PGKPQVAY 176
Query: 126 DSD 128
D D
Sbjct: 177 DFD 179
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 285 HCMGNIISGGLVYWPLEKKVDYGCLAKEIHESIKKVDDQFA 325
HC ++ +G L+ EKK + G K I K VDDQ
Sbjct: 53 HCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMV 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,446,834
Number of Sequences: 62578
Number of extensions: 573525
Number of successful extensions: 1330
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1288
Number of HSP's gapped (non-prelim): 28
length of query: 426
length of database: 14,973,337
effective HSP length: 102
effective length of query: 324
effective length of database: 8,590,381
effective search space: 2783283444
effective search space used: 2783283444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)