Query         048249
Match_columns 426
No_of_seqs    148 out of 1212
Neff          8.8 
Searched_HMMs 29240
Date          Mon Mar 25 13:21:12 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048249hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2bgh_A Vinorine synthase; VS,  100.0 1.3E-81 4.4E-86  632.1  35.2  405    1-424     3-420 (421)
  2 4g22_A Hydroxycinnamoyl-COA sh 100.0 8.6E-81   3E-85  629.4  38.7  403    1-416     6-437 (439)
  3 2xr7_A Malonyltransferase; xen 100.0   1E-73 3.4E-78  580.5  30.9  403    3-417     2-448 (453)
  4 2e1v_A Acyl transferase; BAHD  100.0   9E-73 3.1E-77  573.5  33.7  400    2-417     6-448 (454)
  5 2rkv_A Trichothecene 3-O-acety 100.0 1.7E-66 5.8E-71  527.3  31.4  389   24-421     5-449 (451)
  6 1q9j_A PAPA5, polyketide synth  99.1 1.9E-08 6.5E-13   99.6  23.8  273   22-320     6-314 (422)
  7 2jgp_A Tyrocidine synthetase 3  98.7 5.3E-06 1.8E-10   84.5  24.6  270   22-320    95-401 (520)
  8 4hvm_A Tlmii; PSI-biology, mid  98.6 7.9E-06 2.7E-10   82.7  24.5  272   22-320    12-328 (493)
  9 1l5a_A Amide synthase, VIBH; n  98.6 1.4E-05 4.9E-10   79.2  25.8  253   36-320    21-305 (436)
 10 2xhg_A Tyrocidine synthetase A  98.5 7.2E-05 2.5E-09   74.8  26.3  277   22-320    16-336 (466)
 11 2vsq_A Surfactin synthetase su  98.3 0.00011 3.6E-09   83.3  24.0  256   37-320    36-328 (1304)
 12 3fot_A 15-O-acetyltransferase;  98.0  0.0019 6.6E-08   65.5  24.1  237   51-299    71-366 (519)
 13 3cla_A Type III chloramphenico  69.3     2.7 9.2E-05   36.9   2.9   44  129-172   164-209 (213)
 14 2i9d_A Chloramphenicol acetylt  68.1       3  0.0001   36.8   2.9   28  144-171   189-216 (217)
 15 1q23_A Chloramphenicol acetylt  67.4     3.1 0.00011   36.7   2.9   44  129-172   168-213 (219)
 16 3b8k_A PDCE2;, dihydrolipoylly  64.9     3.8 0.00013   36.7   3.0   29  144-172   204-232 (239)
 17 1scz_A E2, dihydrolipoamide su  62.8     4.2 0.00014   36.2   2.9   30  144-173   196-225 (233)
 18 1dpb_A Dihydrolipoyl-transacet  62.7     4.2 0.00014   36.4   2.9   30  144-173   208-237 (243)
 19 3rqc_A Probable lipoamide acyl  62.4     3.7 0.00013   36.3   2.4   30  144-173   187-216 (224)
 20 2ii3_A Lipoamide acyltransfera  61.0     4.7 0.00016   36.6   2.9   30  144-173   224-253 (262)
 21 3mae_A 2-oxoisovalerate dehydr  55.0     6.9 0.00023   35.4   2.9   30  144-173   210-239 (256)
 22 3l60_A Branched-chain alpha-ke  53.4     7.6 0.00026   34.9   2.9   30  144-173   205-234 (250)
 23 1x93_A Hypothetical protein HP  47.7      25 0.00086   22.5   3.7   37  211-253     3-39  (55)
 24 2k1o_A Putative; repressor, tr  41.6      69  0.0024   21.3   5.2   43  207-255    13-55  (66)
 25 4hhu_A OR280; engineered prote  39.1      31  0.0011   26.7   3.9   41   40-86      4-48  (170)
 26 4hhu_A OR280; engineered prote  38.9      31  0.0011   26.7   3.8   42   39-86     84-129 (170)
 27 3dva_I Dihydrolipoyllysine-res  35.8     7.7 0.00026   37.9   0.0   30  144-173   391-420 (428)
 28 2xl1_A Arginine attenuator pep  34.9      22 0.00076   18.8   1.7   18  234-251     7-24  (26)
 29 2kl8_A OR15; structural genomi  32.3      87   0.003   21.3   4.8   33   54-86     11-47  (85)

No 1  
>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina}
Probab=100.00  E-value=1.3e-81  Score=632.14  Aligned_cols=405  Identities=34%  Similarity=0.555  Sum_probs=345.8

Q ss_pred             CcEEEEeeeEeeCCCCCCCCCCcccCCcCcCCCCCccceEEEEecCCCC---CChhhHHHHHHHHHHHhhhccccccccc
Q 048249            1 MDLQITCTEIIKPSSPTPQHQSTYKLSIIDQLTPNVYFSIILLYSNAGE---STAKTSDHLKKSLSNTLTHYYPLAGQLK   77 (426)
Q Consensus         1 ~~v~~~~~~~V~P~~~~~~~~~~~~Ls~lD~~~~~~~~~~~~~f~~~~~---~~~~~~~~L~~sL~~~L~~~p~LaGrl~   77 (426)
                      |+|+|+++++|+|+.|||.+.+.++||+||+..++.|++.+|||+.++.   +....+++||+||+++|++||+|||||+
T Consensus         3 m~v~v~~~~~V~P~~ptp~~~~~~~LS~lD~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~Lk~sLs~~L~~~~plAGRl~   82 (421)
T 2bgh_A            3 PQMEKVSEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQHLKQSLSKVLTHFYPLAGRIN   82 (421)
T ss_dssp             -CEEEEEEEEEECSSCCCTTSCCCBCCHHHHTSCSSEEEEEEEECCCSSCCCCHHHHHHHHHHHHHHHTTTSGGGGSEEE
T ss_pred             ceEEEeeeEEEeCCCCCCCCCcccCCChHHhcccccccceEEEEeCCCccccchhhHHHHHHHHHHHHhhhcchhccccC
Confidence            6899999999999999987667899999999877899999999987543   2456899999999999999999999998


Q ss_pred             CCCeEEEeCCCCcceEEEEeccChHHhhCC-CChhhhcccCCCCCCCCC----CCCCceeEEEEeEEccCeEEEeeceee
Q 048249           78 YDQLIVDCNDQGVPFIEAHVANDMRQLLKI-PNIDVLEQLLPFKPHEGF----DSDRSNLTLQVNYFGCGGMAIGLCFRH  152 (426)
Q Consensus        78 ~g~~~i~~~~~gv~f~~~~~d~~~~~l~~~-p~~~~~~~l~P~~~~~~~----~~~~P~l~vQvt~~~cgG~~l~~~~~H  152 (426)
                       ++++|+|+++||.|+++++|.+++|+... |+...++.|+|... ..+    ..+.|++.+|||+|+|||++||+++||
T Consensus        83 -~~~~i~c~~~Gv~fv~A~~d~~l~~~~~~~p~~~~~~~l~p~~~-~~~~~~~~~~~pll~vQvt~f~cgG~~lg~~~~H  160 (421)
T 2bgh_A           83 -VNSSVDCNDSGVPFVEARVQAQLSQAIQNVVELEKLDQYLPSAA-YPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSH  160 (421)
T ss_dssp             -TTTEEECCCCCEEEEEEEESSCHHHHHSCCSSGGGGGGGSSSCS-SSSSSSCCCTTCSEEEEEEECTTSCEEEEEEEET
T ss_pred             -CCcEEEEcCCceEEEEEEEcCCHHHHhccCCChHHHHhcCCCCC-CccccccccCCceEEEEEEEEcCCCEEEEEEeeE
Confidence             57999999999999999999999999875 65556788888762 212    446899999999999999999999999


Q ss_pred             eccccccHHHHHHHHHHHhcCCCCCCCccccc-cccCCC-CCCCccccCcccccCCCCeeEEEEEeCHHHHHHHHHHhcc
Q 048249          153 KVIDATTAAFFVKNWGVIARGAGEIKDLIIDH-ASLFPA-RDLSCLAKSVDEEFLKPESETKRFVFDGPTIASFQETFTS  230 (426)
Q Consensus       153 ~v~Dg~~~~~fl~~wa~~~rg~~~~~~P~~dr-~~l~~~-~~~p~~~~~~~~~~~~~~~~~~~f~~s~~~l~~Lk~~~~~  230 (426)
                      .++||.|+.+|+++||++|||......|.||| ..+.++ +++|.  +   .+....++++++|+|++++|++||+++.+
T Consensus       161 ~v~Dg~~~~~fl~~wa~~~rg~~~~~~P~~dr~~~l~p~~~~~~~--~---~~~~~~~~~~~~f~f~~~~i~~LK~~a~~  235 (421)
T 2bgh_A          161 KIADVLSLATFLNAWTATCRGETEIVLPNFDLAARHFPPVDNTPS--P---ELVPDENVVMKRFVFDKEKIGALRAQASS  235 (421)
T ss_dssp             TTCCHHHHHHHHHHHHHHHTTCSCCCCCBCSHHHHHSCCCTTCCC--C---CCCCCSSEEEEEEEECHHHHHHHHHHTC-
T ss_pred             EechHHHHHHHHHHHHHHhcCCCCCCCCccccccccCCCcccCCC--C---ccCCccceEEEEEEECHHHHHHHHHHhhc
Confidence            99999999999999999999975446799999 777665 45443  1   22235678999999999999999999976


Q ss_pred             CC--CCCchhhHHHHHHHHHHHHHhcCCCCCCCCCcceEEEEEeeccccCCCCCCCccccceeeeeeeeecCCCCCCHHH
Q 048249          231 FE--RRPTRFEVVSAVILGALITATRESDDESNVPERLDTIISVNLRQRMNPPFPEHCMGNIISGGLVYWPLEKKVDYGC  308 (426)
Q Consensus       231 ~~--~~~St~d~l~A~lW~~~~~Ar~~~~~~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~v~~~~~~~~~~~~~~l~~  308 (426)
                      +.  .++|+||+|+|++|+|+++||....+   .++.+.+.++||+|+|++||+|++||||++..+.+.++++.+.+|++
T Consensus       236 ~~~~~~~St~d~l~A~iW~~~~~Ar~~~~~---~~~~~~l~~~vd~R~rl~pplP~~y~GN~~~~~~~~~~~~~~~~l~~  312 (421)
T 2bgh_A          236 ASEEKNFSRVQLVVAYIWKHVIDVTRAKYG---AKNKFVVVQAVNLRSRMNPPLPHYAMGNIATLLFAAVDAEWDKDFPD  312 (421)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHHHHHSC---CCSCEEEEEEEESGGGSSSCCCTTBCSCCEEEEEEEECTTCCCCGGG
T ss_pred             cCCCCCCchhHhHHHHHHHHHHHHhcccCC---CCCceEEEEEecCccccCCCCCCCccceEEEEEEEEecccccccHHH
Confidence            42  58999999999999999999875322   23689999999999999999999999999999999888876789999


Q ss_pred             HHHHHHHHHHHhhHHHHhhhcCcccccccccccCCCCCCcCcEEEeecCCCCCCcccCCCCccccccccc-cCCcEEEEe
Q 048249          309 LAKEIHESIKKVDDQFARKFYGDAEFLNLPRLAGAEDVKKREFWVTSWCKTPLYEADFGWGNPKWAGNSM-RLNQITVFF  387 (426)
Q Consensus       309 ~A~~ir~ai~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ssw~~~~~y~~DFG~G~P~~~~~~~-~~~g~~~i~  387 (426)
                      +|.+||++|.++++++++++.+   +.+.  ....+  +.+.+.+|||.++++|++|||||||.++++.. +.+|+++++
T Consensus       313 ~a~~ir~ai~~~~~~~~~~~~~---~~~~--~~~~~--~~~~~~vssw~~~~~y~~DFGwGkP~~v~~~~~~~~g~~~~~  385 (421)
T 2bgh_A          313 LIGPLRTSLEKTEDDHNHELLK---GMTC--LYELE--PQELLSFTSWCRLGFYDLDFGWGKPLSACTTTFPKRNAALLM  385 (421)
T ss_dssp             GHHHHHHHTCCCSSCHHHHHHH---HHHH--HHTSC--GGGEEEEEEETTSCGGGCCSSSCCCSEEECCCCCSTTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHH--hhccC--CCCeEEEeccccCCCcccccCCCccCeecccccCcCCEEEEE
Confidence            9999999999998888886653   3221  11111  13569999999999999999999999999887 678999999


Q ss_pred             eCCCCCeEEEEEeCCHhHHHhHhcccccccccCCCCC
Q 048249          388 DSSDGEGVEAWVGLPRKDMARFEKDSGILAYTSPNPS  424 (426)
Q Consensus       388 p~~~~~g~ev~v~L~~~~m~~l~~d~~~~~~~~~~~~  424 (426)
                      |+++++|++|.|+|++++|++|++  ||.+|+++||+
T Consensus       386 p~~~~~gi~v~v~L~~~~m~~f~~--e~~~~~~~~~~  420 (421)
T 2bgh_A          386 DTRSGDGVEAWLPMAEDEMAMLPV--ELLSLVDSDFS  420 (421)
T ss_dssp             ECTTSSSEEEEEEEEHHHHHHSCH--HHHTTBCCCCC
T ss_pred             ecCCCCeEEEEEEcCHHHHHHHHH--HHHHhhcCCCC
Confidence            999888999999999999999999  99999999997


No 2  
>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A
Probab=100.00  E-value=8.6e-81  Score=629.39  Aligned_cols=403  Identities=24%  Similarity=0.398  Sum_probs=335.3

Q ss_pred             CcEEEEeeeEeeCCCCCCCCCCcccCCcCcCCCCCccceEEEEecCCCCCChhhHHHHHHHHHHHhhhcccccccccC--
Q 048249            1 MDLQITCTEIIKPSSPTPQHQSTYKLSIIDQLTPNVYFSIILLYSNAGESTAKTSDHLKKSLSNTLTHYYPLAGQLKY--   78 (426)
Q Consensus         1 ~~v~~~~~~~V~P~~~~~~~~~~~~Ls~lD~~~~~~~~~~~~~f~~~~~~~~~~~~~L~~sL~~~L~~~p~LaGrl~~--   78 (426)
                      |+|+|+++++|+|+.|+|.  +.++||+||+.+++.|++.+|||+.++.+....+++||+||+++|++||||||||+.  
T Consensus         6 ~~V~i~~~~~V~P~~~tp~--~~~~LS~lD~~~~~~~~~~~~~y~~~~~~~~~~~~~Lk~sLs~~L~~f~plAGRl~~~~   83 (439)
T 4g22_A            6 MKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKVLKDALSRALVPFYPMAGRLKRDE   83 (439)
T ss_dssp             CCEEEEEEEEECCSSCCCC--CEECCCHHHHSCCTTCCCEEEEECCCSCTTTTCHHHHHHHHHHHTTTTGGGGCEEEECT
T ss_pred             eEEEEeeeEEEeCCCCCCC--CeecCChhHhCccccceeeEEEEcCCCCccccHHHHHHHHHHHHHhhccccceeeeeCC
Confidence            6899999999999999875  479999999998889999999998754333456899999999999999999999975  


Q ss_pred             -CCeEEEeCCCCcceEEEEeccChHHhhCCCChhhhcccCCCCCCCCCCCCCceeEEEEeEEccCeEEEeeceeeecccc
Q 048249           79 -DQLIVDCNDQGVPFIEAHVANDMRQLLKIPNIDVLEQLLPFKPHEGFDSDRSNLTLQVNYFGCGGMAIGLCFRHKVIDA  157 (426)
Q Consensus        79 -g~~~i~~~~~gv~f~~~~~d~~~~~l~~~p~~~~~~~l~P~~~~~~~~~~~P~l~vQvt~~~cgG~~l~~~~~H~v~Dg  157 (426)
                       |+++|+||++||.|+|+++|.+++|+........++.|+|..+...+..+.|++.||||+|+|||++||+++||.++||
T Consensus        84 ~g~~~i~c~~~Gv~fv~A~~d~~l~~l~~~~p~~~~~~l~p~~~~~~~~~~~pll~vQvT~f~cGG~~lg~~~~H~v~Dg  163 (439)
T 4g22_A           84 DGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADG  163 (439)
T ss_dssp             TSCEEEECCCCCEEEEEEEESSCGGGGTTCCCCGGGGGGSCCCCTTSCTTSSCSEEEEEEECTTSCEEEEEEECTTTCCH
T ss_pred             CCCEEEEECCCCCEEEEEEcCCcHHHhcCCCCCHHHHhcCCCCCcccccccCceeEEEEEEecCCCEEEEEEeeeccCcH
Confidence             7899999999999999999999999965322246678888665332335679999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHhcCCCCCCCccccccccCCCCCCCc-------cccC--cccc-----cCC-CCeeEEEEEeCHHHHH
Q 048249          158 TTAAFFVKNWGVIARGAGEIKDLIIDHASLFPARDLSC-------LAKS--VDEE-----FLK-PESETKRFVFDGPTIA  222 (426)
Q Consensus       158 ~~~~~fl~~wa~~~rg~~~~~~P~~dr~~l~~~~~~p~-------~~~~--~~~~-----~~~-~~~~~~~f~~s~~~l~  222 (426)
                      .|+.+|+++||++|||.+....|+|||+.+.+ +++|.       +.+.  ....     ..+ .++++++|+|++++|+
T Consensus       164 ~~~~~Fl~~wa~~~rg~~~~~~P~~dr~~l~~-~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fs~~~i~  242 (439)
T 4g22_A          164 FSGLHFINSWSDMARGLDVTLPPFIDRTLLRA-RDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQIS  242 (439)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSSCCBCCGGGGCC-CSSCCCSSCCGGGSCCC---------------CEEEEEEEECHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccccccccC-CCCCCCCcCcccccCCCCCcccccccccCCcccceEEEEEECHHHHH
Confidence            99999999999999998766789999986542 22221       1110  0000     112 5789999999999999


Q ss_pred             HHHHHhccC--CCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCcceEEEEEeeccccCCCCCCCccccceeeeeeeeecC
Q 048249          223 SFQETFTSF--ERRPTRFEVVSAVILGALITATRESDDESNVPERLDTIISVNLRQRMNPPFPEHCMGNIISGGLVYWPL  300 (426)
Q Consensus       223 ~Lk~~~~~~--~~~~St~d~l~A~lW~~~~~Ar~~~~~~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~v~~~~~~~~~  300 (426)
                      +||+++.++  ..++|+||+|+||+|+|+++||...++     +.+++.++||+|+|++||+|++||||++..+.+.+++
T Consensus       243 ~LK~~a~~~~~~~~~St~dal~A~iWr~~~rAr~~~~~-----~~~~l~~~vd~R~rl~Pplp~~Y~GN~v~~~~~~~~~  317 (439)
T 4g22_A          243 ALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVD-----QGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIA  317 (439)
T ss_dssp             HHHHGGGGGGCCCCCCHHHHHHHHHHHHHHHHTTCCTT-----CEEEEEEEEECTTTSSSCCCTTBCSCCEEEECCEEEH
T ss_pred             HHHHHhhccCCCCCccHHHHHHHHHHHHHHHhcCCCCC-----CcEEEEEEEcccCCCCCCCCCCcccceeehhhcceEH
Confidence            999999764  468999999999999999999976544     7899999999999999999999999999999988888


Q ss_pred             C--CCCCHHHHHHHHHHHHHHhhHHHHhhhcCccccccc--ccccCCC---CCCcCcEEEeecCCCCCCcccCCCCcccc
Q 048249          301 E--KKVDYGCLAKEIHESIKKVDDQFARKFYGDAEFLNL--PRLAGAE---DVKKREFWVTSWCKTPLYEADFGWGNPKW  373 (426)
Q Consensus       301 ~--~~~~l~~~A~~ir~ai~~~~~~~v~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~ssw~~~~~y~~DFG~G~P~~  373 (426)
                      +  .+.+|+++|.+||++|++++++|+++.++   |++.  +......   .++...+.+|||+++++|++|||||||++
T Consensus       318 ~el~~~~L~~~A~~Ir~ai~~~~~e~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vssw~r~~~y~~DFGwGkP~~  394 (439)
T 4g22_A          318 GDLEFKPVWYAASKIHDALARMDNDYLRSALD---YLELQPDLKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIF  394 (439)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHTCSHHHHHHHHH---HHHTCSCSTTCCCCHHHHCTTCEEEEECTTSCTTCCCCSSCCCSE
T ss_pred             HHHhhCcHHHHHHHHHHHHHhhCHHHHHHHHH---HHHhCccchhhcccCCcCcCCcEEEeecCcCCccccccCCCCcce
Confidence            6  57899999999999999999999998876   5532  1111111   11234699999999999999999999999


Q ss_pred             ccccc-cCCcEEEEeeCCCC-CeEEEEEeCCHhHHHhHhcccccc
Q 048249          374 AGNSM-RLNQITVFFDSSDG-EGVEAWVGLPRKDMARFEKDSGIL  416 (426)
Q Consensus       374 ~~~~~-~~~g~~~i~p~~~~-~g~ev~v~L~~~~m~~l~~d~~~~  416 (426)
                      +++.. +.+|.++++|++++ ||++|.|||++++|++|++  +|.
T Consensus       395 ~~~~~~~~~g~~~~~p~~~~~ggi~v~v~L~~~~m~~f~~--~~~  437 (439)
T 4g22_A          395 MGPGGIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQS--FLY  437 (439)
T ss_dssp             EEESSCCSTTEEEEEECTTCSSCEEEEEEEEHHHHHHHHH--HHT
T ss_pred             eeccccCCCcEEEEeecCCCCCcEEEEEECCHHHHHHHHH--Hhc
Confidence            99877 67899999999754 4899999999999999997  553


No 3  
>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum}
Probab=100.00  E-value=1e-73  Score=580.50  Aligned_cols=403  Identities=21%  Similarity=0.259  Sum_probs=323.3

Q ss_pred             EEEEeeeEeeCCCCCCCCCCcccCCcCcCCCC-CccceEEEEecCCCC-C--ChhhHHHHHHHHHHHhhhcccccccccC
Q 048249            3 LQITCTEIIKPSSPTPQHQSTYKLSIIDQLTP-NVYFSIILLYSNAGE-S--TAKTSDHLKKSLSNTLTHYYPLAGQLKY   78 (426)
Q Consensus         3 v~~~~~~~V~P~~~~~~~~~~~~Ls~lD~~~~-~~~~~~~~~f~~~~~-~--~~~~~~~L~~sL~~~L~~~p~LaGrl~~   78 (426)
                      |+|+++++|+|+.|+++ .+.++||+||+.+. ..|++.+|||+.++. +  .+..+++||+||+++|++||+|||||+.
T Consensus         2 v~v~~~~~V~P~~~~~~-~~~~~LS~lD~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~Lk~sLs~~L~~~~plAGRl~~   80 (453)
T 2xr7_A            2 ASVIEQCQVVPSPGSAT-ELTLPLTYFDHVWLAFHRMRRILFYKLPISRPDFVQTIIPTLKDSLSLTLKYYLPLAGNVAC   80 (453)
T ss_dssp             CEEEEESCCCCCTTCCS-EEEEECCHHHHGGGGSCCEEEEEEEECCCCSHHHHHTHHHHHHHHHHHHHTTSGGGGSCCEE
T ss_pred             eEEEEEEEecCCCCCCC-CceECCCHHHhhhhhcCCccEEEEEeCCCCCchhHHHHHHHHHHHHHHHhhhccccCeeEEc
Confidence            89999999999987544 36899999999754 569999999987643 2  3457899999999999999999999953


Q ss_pred             -----CCeEEEeC-CCCcceEEEEeccChHHhhCC--CChhhhcccCCCCCCCCC---CCCCceeEEEEeEEccCeEEEe
Q 048249           79 -----DQLIVDCN-DQGVPFIEAHVANDMRQLLKI--PNIDVLEQLLPFKPHEGF---DSDRSNLTLQVNYFGCGGMAIG  147 (426)
Q Consensus        79 -----g~~~i~~~-~~gv~f~~~~~d~~~~~l~~~--p~~~~~~~l~P~~~~~~~---~~~~P~l~vQvt~~~cgG~~l~  147 (426)
                           |+++|+|+ ++||.|++++++.+++++...  +....++.|+|..+....   ..+.|++.+|||+|+|||++||
T Consensus        81 ~~~~~g~~~i~c~~~~gv~fv~A~~~~~l~~l~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~pll~vQvT~f~cGG~~lg  160 (453)
T 2xr7_A           81 PQDWSGYPELRYVTGNSVSVIFSESDMDFNYLIGYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIG  160 (453)
T ss_dssp             ESSTTCCCEEEEETTCCCEEEEEECCSCHHHHTCSSCCCGGGGGGGSCCCCCCEEETTEEECCCEEEEEEEETTTEEEEE
T ss_pred             cCCCCCCEEEEecCCCceEEEEEecCCCHHHhhccCCCChhhhhcCCCCCCCcccccccccCCeEEEEEEEccCCcEEEE
Confidence                 68999999 599999999999999999752  234566788887642210   1127999999999999999999


Q ss_pred             eceeeeccccccHHHHHHHHHHHhc-CC-C----CCCCccccccccCCCCCCC-----ccc--cCc-cc--ccCCCCeeE
Q 048249          148 LCFRHKVIDATTAAFFVKNWGVIAR-GA-G----EIKDLIIDHASLFPARDLS-----CLA--KSV-DE--EFLKPESET  211 (426)
Q Consensus       148 ~~~~H~v~Dg~~~~~fl~~wa~~~r-g~-~----~~~~P~~dr~~l~~~~~~p-----~~~--~~~-~~--~~~~~~~~~  211 (426)
                      +++||.++||.|+.+|+++||++|| |. .    ....|.+||+.+.+|..++     .+.  +.. +.  ...+.++++
T Consensus       161 ~~~~H~v~Dg~~~~~Fl~~wa~~~r~G~~~~~~~~~~~P~~dr~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (453)
T 2xr7_A          161 FTNHHVAGDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVIKDPNGVGMSIWNEMKKYKHMMKMSDVVTPPDKVR  240 (453)
T ss_dssp             EEECTTTCCSHHHHHHHHHHHHHHHTTTCGGGSCGGGSCBCCCSSSCCSSCHHHHTTTTGGGCTTTSCCSCCCCCCSCCC
T ss_pred             EeeeeeeechhHHHHHHHHHHHHhhcCCCcccCCCCCCCccccccccCCCCcchHHHHhccccCCccccccccCCCCceE
Confidence            9999999999999999999999999 76 3    1346899998776543221     010  000 00  012456778


Q ss_pred             EEEEeCHHHHHHHHHHhccC---CCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCcceEEEEEeeccccCCCCCCCcccc
Q 048249          212 KRFVFDGPTIASFQETFTSF---ERRPTRFEVVSAVILGALITATRESDDESNVPERLDTIISVNLRQRMNPPFPEHCMG  288 (426)
Q Consensus       212 ~~f~~s~~~l~~Lk~~~~~~---~~~~St~d~l~A~lW~~~~~Ar~~~~~~~~~~~~~~l~~~vd~R~rl~pplp~~Y~G  288 (426)
                      ++|+|++++|++||+++.++   ..++|+||+|+|++|+|+++||.....+..+++.+.+.++||+|+|++||+|++|||
T Consensus       241 ~~f~f~~~~i~~Lk~~a~~~~~~~~~~St~~~l~A~lW~~~~~Ar~~~~~~~~~~~~~~l~~~vd~R~rl~pplP~~Y~G  320 (453)
T 2xr7_A          241 GTFIITRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDENGMEFFGCAADCRAQFNPPLPPSYFG  320 (453)
T ss_dssp             EEEEECHHHHHHHHHHHHHHSCCCSCCCHHHHHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEECCTTSCSSSCCCTTBCS
T ss_pred             EEEEECHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHhccccccCCCCcceEEEEEecccccCCCCCCccccc
Confidence            99999999999999998753   257999999999999999999975200000237899999999999999999999999


Q ss_pred             ceeeeeeeeecCC--C-CCCHHHHHHHHHHHHHH--hhHH-HHhhhcCcccccccccccCCCCCCcCcEEEeecCCCCCC
Q 048249          289 NIISGGLVYWPLE--K-KVDYGCLAKEIHESIKK--VDDQ-FARKFYGDAEFLNLPRLAGAEDVKKREFWVTSWCKTPLY  362 (426)
Q Consensus       289 N~v~~~~~~~~~~--~-~~~l~~~A~~ir~ai~~--~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ssw~~~~~y  362 (426)
                      |++..+.+.++++  . +.+|+++|.+||++|++  ++++ |+++  +   |++.  ....  .+...+.+|||++|++|
T Consensus       321 N~~~~~~~~~~~~el~~~~~l~~~a~~Ir~ai~~~~~~~e~~~~~--~---~~~~--~~~~--~~~~~~~vssw~~~~~y  391 (453)
T 2xr7_A          321 NALVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRMKDEEWILSG--S---WFKE--YDKV--DAKRSLSVAGSPKLDLY  391 (453)
T ss_dssp             CCCCEEEEEEEHHHHTSSSHHHHHHHHHHHHHTTSSSCHHHHHSS--C---TTSC--CCCS--CGGGEEEECSCSSCCGG
T ss_pred             ceeeeeeeeeeHHHhcCcchHHHHHHHHHHHHHhhccCCccchhh--H---HHHH--HHhh--ccCCcEEEeccccCCcc
Confidence            9999999888887  4 58999999999999999  5677 8876  3   5542  1111  11346999999999999


Q ss_pred             cccCCCCccccccccc-cCCc--EEEEeeCCCCC-eEEEEEeCCHhHHHhHhccccccc
Q 048249          363 EADFGWGNPKWAGNSM-RLNQ--ITVFFDSSDGE-GVEAWVGLPRKDMARFEKDSGILA  417 (426)
Q Consensus       363 ~~DFG~G~P~~~~~~~-~~~g--~~~i~p~~~~~-g~ev~v~L~~~~m~~l~~d~~~~~  417 (426)
                      ++|||||||.++++.. +.+|  .++++|+++++ |++|.|||++++|++|++  +|.+
T Consensus       392 ~~DFG~G~P~~v~~~~~~~~g~~~~~l~~~~~~~ggi~v~v~L~~~~m~~f~~--~~~~  448 (453)
T 2xr7_A          392 AADFGWGRPEKLEFVSIDNDDGISMSLSKSKDSDGDLEIGLSLSKTRMNAFAA--MFTH  448 (453)
T ss_dssp             GCCCSSCSCSEEEEGGGSSCSSCEEEEEECSSSTTCEEEEECCCHHHHHHHHH--HHHH
T ss_pred             ccccCCCcceEEEeeeecCCCceEEEEeecCCCCCCEEEEEEeCHHHHHHHHH--HHHH
Confidence            9999999999999877 6678  88899987765 799999999999999976  6654


No 4  
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A
Probab=100.00  E-value=9e-73  Score=573.51  Aligned_cols=400  Identities=23%  Similarity=0.306  Sum_probs=320.7

Q ss_pred             cEEEEeeeEeeCCCCCCCCCCcccCCcCcCCCC-CccceEEEEecCCCC-C--ChhhHHHHHHHHHHHhhhccccccccc
Q 048249            2 DLQITCTEIIKPSSPTPQHQSTYKLSIIDQLTP-NVYFSIILLYSNAGE-S--TAKTSDHLKKSLSNTLTHYYPLAGQLK   77 (426)
Q Consensus         2 ~v~~~~~~~V~P~~~~~~~~~~~~Ls~lD~~~~-~~~~~~~~~f~~~~~-~--~~~~~~~L~~sL~~~L~~~p~LaGrl~   77 (426)
                      .|+|+++++|+|+.|+++ .+.++||+||+.+. ..|++.+|||+.++. +  .+..+++||+||+++|++||+|||||+
T Consensus         6 ~v~v~~~~~V~P~~~~~~-~~~~~LS~lD~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~Lk~sLs~~L~~~~plAGRl~   84 (454)
T 2e1v_A            6 ILTVLEQSQVSPPPDTLG-DKSLQLTFFDFFWLRSPPINNLFFYELPITRSQFTETVVPNIKHSLSITLKHFYPFVGKLV   84 (454)
T ss_dssp             CEEEEEEEEECCCTTSCC-CEEEECCHHHHTTTTCCCEEEEEEEECCCCHHHHHHTHHHHHHHHHHHHHTTCGGGGSEEE
T ss_pred             eEEEEEEEEEeCCCCCCC-CceecCchHHhhhhccCCccEEEEEeCCCCcchhhHHHHHHHHHHHHHHhhhccccceeee
Confidence            599999999999987544 36899999999754 569999999997643 2  345789999999999999999999998


Q ss_pred             -C----CCeEEEeC-CCCcceEEEEeccChHHhhCC-C-ChhhhcccCCCCCCCC---CCCCCceeEEEEeEEccCeEEE
Q 048249           78 -Y----DQLIVDCN-DQGVPFIEAHVANDMRQLLKI-P-NIDVLEQLLPFKPHEG---FDSDRSNLTLQVNYFGCGGMAI  146 (426)
Q Consensus        78 -~----g~~~i~~~-~~gv~f~~~~~d~~~~~l~~~-p-~~~~~~~l~P~~~~~~---~~~~~P~l~vQvt~~~cgG~~l  146 (426)
                       .    |+++|+|+ ++||.|++++++.+++++... + ....++.|+|..+...   +..+.|++.+|||+|+|||++|
T Consensus        85 ~~~~~~g~~~i~c~~~~gv~fv~A~~~~~l~~l~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~pll~vQvT~f~cgG~~l  164 (454)
T 2e1v_A           85 VYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAI  164 (454)
T ss_dssp             ECSSSSSCCEEEECTTCCEEEEEEEECSCGGGTSSSSCEEGGGGGGGSCCCCCCEECSSCEEEECEEEEEEEETTTEEEE
T ss_pred             eccCCCCCEEEEECCCCcEEEEEEEeCCCHHHhcCCCCCcchhhhcCCCCCCCcccccccccCceEEEEEEEecCCcEEE
Confidence             3    68999999 599999999999999999653 2 2345678888764221   1134599999999999999999


Q ss_pred             eeceeeeccccccHHHHHHHHHHHhc-CCC-C-----CCCccccccccCCCC-CCC---cccc-Cc-----ccc-cCCCC
Q 048249          147 GLCFRHKVIDATTAAFFVKNWGVIAR-GAG-E-----IKDLIIDHASLFPAR-DLS---CLAK-SV-----DEE-FLKPE  208 (426)
Q Consensus       147 ~~~~~H~v~Dg~~~~~fl~~wa~~~r-g~~-~-----~~~P~~dr~~l~~~~-~~p---~~~~-~~-----~~~-~~~~~  208 (426)
                      |+++||.++||.|+.+|+++||++|| |.. .     ...|.+|| .+..|. +.+   .+.. ..     +.. ..+.+
T Consensus       165 g~~~~H~v~Dg~~~~~Fl~awa~~~r~g~~~~~~~~~~~~P~~dr-~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (454)
T 2e1v_A          165 GITNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDR-IIKYPMLDEAYLKRAKVESFNEDYVTQSLAGPSD  243 (454)
T ss_dssp             EEEECGGGCCHHHHHHHHHHHHHHHHTTSCCHHHHHHSCCCBCCC-CCCCHHHHHHHHHHTTCTTHHHHCCCCCCCCCCC
T ss_pred             EEEeeeeecchhHHHHHHHHHHHHhccCCCccccCCCCCCCcccc-cCCCCCcchHHHHhhhccccccccCcccCCCCCC
Confidence            99999999999999999999999999 763 1     34689999 553211 000   0000 00     000 12456


Q ss_pred             eeEEEEEeCHHHHHHHHHHhccCC---CCCchhhHHHHHHHHHHHHHhcCCCCCCCCCcceEEEEEeeccccCCCCCCCc
Q 048249          209 SETKRFVFDGPTIASFQETFTSFE---RRPTRFEVVSAVILGALITATRESDDESNVPERLDTIISVNLRQRMNPPFPEH  285 (426)
Q Consensus       209 ~~~~~f~~s~~~l~~Lk~~~~~~~---~~~St~d~l~A~lW~~~~~Ar~~~~~~~~~~~~~~l~~~vd~R~rl~pplp~~  285 (426)
                      .++++|+|++++|++||+++.++.   .++|+||+|+|++|+|+++||   ++     +.+++.++||+|+|++||+|++
T Consensus       244 ~~~~~f~f~~~~i~~LK~~a~~~~~~~~~~St~d~l~A~lWr~~~~Ar---~~-----~~~~l~~~vd~R~rl~pplP~~  315 (454)
T 2e1v_A          244 KLRATFILTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSR---ND-----KLQLFGFPIDRRARMKPPIPTA  315 (454)
T ss_dssp             EEEEEEEECHHHHHHHHHHHHHHCTTCSCCCHHHHHHHHHHHHHHHHH---CC-----SEEEEEEEEECGGGSSSCCCTT
T ss_pred             ceEEEEEECHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhc---CC-----CceEEEEEecchhccCCCCCcc
Confidence            789999999999999999987532   579999999999999999999   33     6899999999999999999999


Q ss_pred             cccceeeeeeeeecCC--C-CCCHHHHHHHHHHHHHHhhHHHHhhhcCc--ccccccccccCCCCCCcCcEEEeecCCCC
Q 048249          286 CMGNIISGGLVYWPLE--K-KVDYGCLAKEIHESIKKVDDQFARKFYGD--AEFLNLPRLAGAEDVKKREFWVTSWCKTP  360 (426)
Q Consensus       286 Y~GN~v~~~~~~~~~~--~-~~~l~~~A~~ir~ai~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ssw~~~~  360 (426)
                      ||||++..+.+.++++  . +.+|+++|.+||++|++++++|+++++..  .+|++.  ....  .+...+.+|||++++
T Consensus       316 Y~GN~~~~~~~~~~~~el~~~~~l~~~a~~Ir~ai~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~vssw~~~~  391 (454)
T 2e1v_A          316 YFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKDGVLKDDMESFNDL--VSEG--MPTTMTWVSGTPKLR  391 (454)
T ss_dssp             BCSCCEEEEEEEEEGGGTSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CHH--HHHC--CCSEEEEEECCTTSC
T ss_pred             cccceeeeEEeecchhhccccccHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH--HHhh--cCCceEEEecCCCCC
Confidence            9999999999988887  4 47999999999999999987777766541  223321  1111  113469999999999


Q ss_pred             CCcccCCCCccccccccc-cCCcEEEEeeCCCCC-eEEEEEeCCHhHHHhHhccccccc
Q 048249          361 LYEADFGWGNPKWAGNSM-RLNQITVFFDSSDGE-GVEAWVGLPRKDMARFEKDSGILA  417 (426)
Q Consensus       361 ~y~~DFG~G~P~~~~~~~-~~~g~~~i~p~~~~~-g~ev~v~L~~~~m~~l~~d~~~~~  417 (426)
                      +|++|||||||.++++.. +.+|.++++|+++++ |++|.|||++++|++|++  +|.+
T Consensus       392 ~y~~DFG~G~P~~v~~~~~~~~g~~~l~p~~~~~ggi~v~v~L~~~~m~~f~~--~~~~  448 (454)
T 2e1v_A          392 FYDMDFGWGKPKKLETVSIDHNGAISINSCKESNEDLEIGVCISATQMEDFVH--IFDD  448 (454)
T ss_dssp             GGGCCSSSCSCSEEEEGGGGGSSEEEEEECSSCTTSEEEEEEEEHHHHHHHHH--HHHH
T ss_pred             cccccccCccceEEEeeeeCCCCeEEEEecCCCCCCEEEEEEECHHHHHHHHH--HHHH
Confidence            999999999999999877 668999999988765 799999999999999976  6654


No 5  
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Probab=100.00  E-value=1.7e-66  Score=527.32  Aligned_cols=389  Identities=16%  Similarity=0.216  Sum_probs=301.3

Q ss_pred             ccCCcCcCCC--CCccceEEEEecCCCC-CChhhHHHHHHHHHHHhhhcccccccccC--------CCeEEEeCCCCcce
Q 048249           24 YKLSIIDQLT--PNVYFSIILLYSNAGE-STAKTSDHLKKSLSNTLTHYYPLAGQLKY--------DQLIVDCNDQGVPF   92 (426)
Q Consensus        24 ~~Ls~lD~~~--~~~~~~~~~~f~~~~~-~~~~~~~~L~~sL~~~L~~~p~LaGrl~~--------g~~~i~~~~~gv~f   92 (426)
                      ++||.|||+.  ++.|++.+|||+.++. +.+..+++||+||+++|++||||||||+.        |+++|+|++.++.|
T Consensus         5 ~~Ls~lD~~~~~~~~y~~~~~~y~~~~~~~~~~~~~~Lk~sLs~~L~~~~plAGRl~~~~~~~~~~g~~~i~~~~~~~~~   84 (451)
T 2rkv_A            5 IQLDTLGQLPGLLSIYTQISLLYPVSDSSQYPTIVSTFEQGLKRFSEAVPWVAGQVKAEGISEGNTGTSFIVPFEDVPRV   84 (451)
T ss_dssp             EECCGGGGCTTGGGCEEEEEEEEECSCGGGHHHHHHHHHHHHHHHHHHSGGGGCEEEEESCBTTBCCEEEEECCCSSCEE
T ss_pred             ccCChhhcCccccccceeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCceeEEEEECCCCCCCCCcEEEeecCCCCeE
Confidence            6999999987  6899999999996432 34567999999999999999999999964        56899987766669


Q ss_pred             EEEEecc-----ChHHhhC-CCChhhhc--ccCCCCCC-----CCCCCCCceeEEEEeEEccCeEEEeeceeeecccccc
Q 048249           93 IEAHVAN-----DMRQLLK-IPNIDVLE--QLLPFKPH-----EGFDSDRSNLTLQVNYFGCGGMAIGLCFRHKVIDATT  159 (426)
Q Consensus        93 ~~~~~d~-----~~~~l~~-~p~~~~~~--~l~P~~~~-----~~~~~~~P~l~vQvt~~~cgG~~l~~~~~H~v~Dg~~  159 (426)
                      ++++++.     ++++|.. ......++  .+.|....     .....+.|++.+|||+| |||++||+++||.++||.|
T Consensus        85 ~va~~~~d~~~p~~~~l~~~~~p~~~~~~~~~~p~~~~p~~~~~~~~~~~pll~vQvT~~-~GG~~lg~~~~H~v~Dg~g  163 (451)
T 2rkv_A           85 VVKDLRDDPSAPTIEGMRKAGYPMAMFDENIIAPRKTLPIGPGTGPDDPKPVILLQLNFI-KGGLILTVNGQHGAMDMVG  163 (451)
T ss_dssp             EEEECTTCTTSCBHHHHHHHTSCGGGSBHHHHCSSCSSSCSTTCSTTSCCBSEEEEEEEE-BTEEEEEEEEETTTCCHHH
T ss_pred             EEEeCCCCCCCCCHHHHHHcCCChhhcCHhhcCCcccCCCCcccCCCCCCceEEEEEEEe-cCceeeeeeehhccccHHH
Confidence            9988764     6777753 21111221  23332211     11234589999999966 7999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCC----CCccccccccCCCC--CCCc--cccC-c---c----cccCCCCeeEEEEEeCHHHHHH
Q 048249          160 AAFFVKNWGVIARGAGEI----KDLIIDHASLFPAR--DLSC--LAKS-V---D----EEFLKPESETKRFVFDGPTIAS  223 (426)
Q Consensus       160 ~~~fl~~wa~~~rg~~~~----~~P~~dr~~l~~~~--~~p~--~~~~-~---~----~~~~~~~~~~~~f~~s~~~l~~  223 (426)
                      +.+|+++||++|||.+..    ..|++||+.+.|..  ..|.  +... .   +    ......++.+++|+|++++|++
T Consensus       164 ~~~Fl~awa~~~rg~~~~~~~~~~p~~dr~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~i~~  243 (451)
T 2rkv_A          164 QDAVIRLLSKACRNDPFTEEEMTAMNLDRKTIVPYLENYTIGPEVDHQIVKADVAGGDAVLTPVSASWAFFTFSPKAMSE  243 (451)
T ss_dssp             HHHHHHHHHHHHHTCCCCHHHHHHTTCCSTTSSCCCTTCCCCGGGTTCBCCTTSCC-------CCEEEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCccccccccCchhhccccccccCCCccccccccCCCCCCCCCCCCCCCceEEEEEECHHHHHH
Confidence            999999999999997532    25889988665431  2221  1110 0   0    1123456889999999999999


Q ss_pred             HHHHhccC----CCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCcceEEEEEeeccccCCCCCCCccccceeeeeeeeec
Q 048249          224 FQETFTSF----ERRPTRFEVVSAVILGALITATRESDDESNVPERLDTIISVNLRQRMNPPFPEHCMGNIISGGLVYWP  299 (426)
Q Consensus       224 Lk~~~~~~----~~~~St~d~l~A~lW~~~~~Ar~~~~~~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~v~~~~~~~~  299 (426)
                      ||+++.++    +.++|+||+|+|++|+|+++||....+   +++.+++.++||+|+|++  +|.+||||++..+.+.++
T Consensus       244 LK~~a~~~~~~~~~~~St~d~l~A~~Wr~~~~Ar~~~~~---~~~~~~l~~~vd~R~rl~--lP~~y~GN~~~~~~~~~~  318 (451)
T 2rkv_A          244 LKDAATKTLDASTKFVSTDDALSAFIWKSASRVRLERID---GSAPTEFCRAVDARPAMG--VSNNYPGLLQNMTYHNST  318 (451)
T ss_dssp             HHHHHHTTCCTTCSCCCHHHHHHHHHHHHHHHHHTTTSC---TTSEEEEEEEEECHHHHT--CCTTCCSCCEEEEEEEEE
T ss_pred             HHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHhccCC---CCCceEEEEEecccccCC--CCCCCcccceeeecccCc
Confidence            99998754    357999999999999999999831111   237899999999999998  889999999999998888


Q ss_pred             CC--CCCCHHHHHHHHHHHHHHhhHHH-HhhhcCccccccc--cccc-CCC-CC-CcCcEEEeecCCCCCCcccCC--CC
Q 048249          300 LE--KKVDYGCLAKEIHESIKKVDDQF-ARKFYGDAEFLNL--PRLA-GAE-DV-KKREFWVTSWCKTPLYEADFG--WG  369 (426)
Q Consensus       300 ~~--~~~~l~~~A~~ir~ai~~~~~~~-v~~~~~~~~~~~~--~~~~-~~~-~~-~~~~~~~ssw~~~~~y~~DFG--~G  369 (426)
                      ++  .+.+|+++|.+||++|.+++.++ +++.++   |++.  +... ... .. ...++.+|||+++++|++|||  ||
T Consensus       319 ~~el~~~~L~~~a~~ir~ai~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ssw~~~~~y~~DFG~gwG  395 (451)
T 2rkv_A          319 IGEIANESLGATASRLRSELDPASMRQRTRGLAT---YLHNNPDKSNVSLTADADPSTSVMLSSWAKVGLWDYDFGLGLG  395 (451)
T ss_dssp             HHHHHHSCHHHHHHHHHTTCCHHHHHHHHHHHHH---HHHHCSCCTTBCTTTTCCTTTCEEEEECTTCCGGGCCTTCSSC
T ss_pred             HHHhccchHHHHHHHHHHHhcccCchhHHHHHHH---HHhcCCCccccccccccCCCCCEEEeccccCCccccccCCCCC
Confidence            76  57899999999999999998888 888775   4432  1110 011 11 134599999999999999998  79


Q ss_pred             ccccccccc--cCCcEEEEeeCCCCCeEEEEEeCCHhHHHhHhcccccccccCC
Q 048249          370 NPKWAGNSM--RLNQITVFFDSSDGEGVEAWVGLPRKDMARFEKDSGILAYTSP  421 (426)
Q Consensus       370 ~P~~~~~~~--~~~g~~~i~p~~~~~g~ev~v~L~~~~m~~l~~d~~~~~~~~~  421 (426)
                      ||.+++.+.  ..+|.++++|++.+||++|.|||++++|++|++|+||++|++.
T Consensus       396 ~P~~v~~~~~~~~~g~~~~~p~~~~ggi~v~v~L~~~~m~~f~~d~ef~~~~~~  449 (451)
T 2rkv_A          396 KPETVRRPIFEPVESLMYFMPKKPDGEFCAALSLRDEDMDRLKADKEWTKYAQY  449 (451)
T ss_dssp             SCSEEECCBCSCCTTEEEECCCCTTSCEEEEEEEEHHHHHHHHHCHHHHTTCEE
T ss_pred             CceEEEcCCccCCCCEEEEecCCCCCCEEEEEEeCHHHHHHHhcCHHHHhhhee
Confidence            999998655  4689999998766668999999999999999999999999864


No 6  
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=99.09  E-value=1.9e-08  Score=99.61  Aligned_cols=273  Identities=17%  Similarity=0.090  Sum_probs=162.8

Q ss_pred             CcccCCcCcCCCC--CccceEEEEecCCCCCChhhHHHHHHHHHHHhhhcccccccccC--CC-eEEEeCCCCcc-eEEE
Q 048249           22 STYKLSIIDQLTP--NVYFSIILLYSNAGESTAKTSDHLKKSLSNTLTHYYPLAGQLKY--DQ-LIVDCNDQGVP-FIEA   95 (426)
Q Consensus        22 ~~~~Ls~lD~~~~--~~~~~~~~~f~~~~~~~~~~~~~L~~sL~~~L~~~p~LaGrl~~--g~-~~i~~~~~gv~-f~~~   95 (426)
                      ..+|||++++.+.  .+++...+-++.+     ...++|++++.+++.++|.|-.++..  |+ ..+........ +.+.
T Consensus         6 ~~~pls~~Q~~~~~~~y~~~~~~~l~g~-----ld~~~l~~A~~~lv~rh~~LRt~f~~~~~~~~q~v~~~~~~~~~~~~   80 (422)
T 1q9j_A            6 VIRKLSHSEEVFAQYEVFTSMTIQLRGV-----IDVDALSDAFDALLETHPVLASHLEQSSDGGWNLVADDLLHSGICVI   80 (422)
T ss_dssp             EEEECCHHHHHHHHTTCEEEEEEEEESC-----CCHHHHHHHHHHHHHHCGGGSEEEEECTTSSEEEEECCSSSCCCEEE
T ss_pred             eeecCCHHHHHHHhcCceEEEEEEEecC-----CCHHHHHHHHHHHHHhCccceEEEEecCCcceeeeccCCCCCceEEE
Confidence            4689999887432  3445555555543     36889999999999999999988854  22 22222211111 2111


Q ss_pred             EeccChHHhhCCCChhhhcccCCCCCCCCCCCCCceeEEEEeEEccCeEEEeeceeeeccccccHHHHHHHHHHHhc---
Q 048249           96 HVANDMRQLLKIPNIDVLEQLLPFKPHEGFDSDRSNLTLQVNYFGCGGMAIGLCFRHKVIDATTAAFFVKNWGVIAR---  172 (426)
Q Consensus        96 ~~d~~~~~l~~~p~~~~~~~l~P~~~~~~~~~~~P~l~vQvt~~~cgG~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r---  172 (426)
                             |+........+.. . ..+  .+ ...|++++.+.. ..++..|.+.+||.++||.|+..|++.|.+.++   
T Consensus        81 -------d~~~~~~~~~~~~-~-~~~--~d-~~~pl~r~~l~~-~~~~~~l~l~~hH~i~Dg~S~~~l~~~l~~~Y~~~~  147 (422)
T 1q9j_A           81 -------DGTAATNGSPSGN-A-ELR--LD-QSVSLLHLQLIL-REGGAELTLYLHHCMADGHHGAVLVDELFSRYTDAV  147 (422)
T ss_dssp             -------C-------------C-CCC--CC-TTTCSEEEEEEC-CSSSCEEEEEEEGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred             -------ECCCCCcchhhhc-c-cCc--cC-CCCCcEEEEEEe-cCCCeEEEEEeceEEEchhhHHHHHHHHHHHHHHhh
Confidence                   1111100011110 0 011  12 466999888877 668899999999999999999999999999887   


Q ss_pred             --CCCCCCC--cccc-------ccccCC---C---CCCCcccc-----C--cc---cccCCCCeeEEEEEeCHHHHHHHH
Q 048249          173 --GAGEIKD--LIID-------HASLFP---A---RDLSCLAK-----S--VD---EEFLKPESETKRFVFDGPTIASFQ  225 (426)
Q Consensus       173 --g~~~~~~--P~~d-------r~~l~~---~---~~~p~~~~-----~--~~---~~~~~~~~~~~~f~~s~~~l~~Lk  225 (426)
                        |.+....  +.-+       ......   .   ...-.|..     .  .+   ............+.++.+..++||
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~l~~~~~lp~~~~~~~~~~~~~~~~~l~~~~~~~l~  227 (422)
T 1q9j_A          148 TTGDPGPITPQPTPLSMEAVLAQRGIRKQGLSGAERFMSVMYAYEIPATETPAVLAHPGLPQAVPVTRLWLSKQQTSDLM  227 (422)
T ss_dssp             HSSSCCCCCCCCCCBCHHHHHHHSSCCC-----CTTSSTTTTCC-------------CCSBCCCCEEEECCCHHHHHHHH
T ss_pred             ccCCCCCCCCCCCCCCHHHHHHhcCCcccccchhhhhhhhhhcccCCCcccCCCCCCCCCCCCccceEEEeCHHHHHHHH
Confidence              3322111  1111       000000   0   00001110     0  01   111122345678899999999999


Q ss_pred             HHhccCCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCcceEEEEEeeccccCCCCCCCccccceeeeeeeeecCCCCCC
Q 048249          226 ETFTSFERRPTRFEVVSAVILGALITATRESDDESNVPERLDTIISVNLRQRMNPPFPEHCMGNIISGGLVYWPLEKKVD  305 (426)
Q Consensus       226 ~~~~~~~~~~St~d~l~A~lW~~~~~Ar~~~~~~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~v~~~~~~~~~~~~~~  305 (426)
                      +.|...  .+|.++++.|.+-..+.+-+.. .     .....+.+++++|....|+++..-+.|++.+....+++..+.+
T Consensus       228 ~~a~~~--~~t~~~~l~aa~~~~l~r~~~~-~-----~~~v~~g~~~~~R~~~~~~~~~~~~~~~vG~f~n~lp~~~~~~  299 (422)
T 1q9j_A          228 AFGREH--RLSLNAVVAAAILLTEWQLRNT-P-----HVPIPYVYPVDLRFVLAPPVAPTEATNLLGAASYLAEIGPNTD  299 (422)
T ss_dssp             HHHTTT--TCCHHHHHHHHHHHHHHHHHTC-S-----SCCEEEEEEEETTTTSSSCCCTTTBSCCEEEEEEEECCCSSCC
T ss_pred             HHHHHh--CCCHHHHHHHHHHHHHHhcccC-C-----CceEEEeeeeecccccCCCCChhhhhhhheeeeeeeeccCCCC
Confidence            998753  5789999988866666654211 1     1467899999999987665542233455555445556654567


Q ss_pred             HHHHHHHHHHHHHHh
Q 048249          306 YGCLAKEIHESIKKV  320 (426)
Q Consensus       306 l~~~A~~ir~ai~~~  320 (426)
                      +.++++.+++.+.+.
T Consensus       300 ~~~~l~~v~~~~~~~  314 (422)
T 1q9j_A          300 IVDLASDIVATLRAD  314 (422)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888999998888764


No 7  
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=98.66  E-value=5.3e-06  Score=84.55  Aligned_cols=270  Identities=9%  Similarity=0.039  Sum_probs=164.3

Q ss_pred             CcccCCcCcCC-------CC---CccceEEEEecCCCCCChhhHHHHHHHHHHHhhhcccccccccC--CCeE-EEeCCC
Q 048249           22 STYKLSIIDQL-------TP---NVYFSIILLYSNAGESTAKTSDHLKKSLSNTLTHYYPLAGQLKY--DQLI-VDCNDQ   88 (426)
Q Consensus        22 ~~~~Ls~lD~~-------~~---~~~~~~~~~f~~~~~~~~~~~~~L~~sL~~~L~~~p~LaGrl~~--g~~~-i~~~~~   88 (426)
                      ..+|||+.-+.       .+   .+++...+-++.+     ...++|++++.+++.++|.|--++..  |... +.....
T Consensus        95 ~~~pls~~Q~~~~~~~~~~~~~~~y~~~~~~~l~g~-----ld~~~l~~A~~~lv~rh~~LRt~f~~~~~~~~q~v~~~~  169 (520)
T 2jgp_A           95 AYYPVSSAQKRMYILDQFEGVGISYNMPSTMLIEGK-----LERTRVEAAFQRLIARHESLRTSFAVVNGEPVQNIHEDV  169 (520)
T ss_dssp             SSEECCHHHHHHHHHHHHTCCTTTTBCCEEEEEEEC-----CCHHHHHHHHHHHHHHCGGGGEEEEEETTEEEEEECSCC
T ss_pred             CCCCCCHHHHHHHHHHhcCCCCCcccceEEEEECCC-----CCHHHHHHHHHHHHHHhHhheeEEEeeCCEEEEEECCCC
Confidence            46899976441       11   2335555555544     36899999999999999999988754  3321 111222


Q ss_pred             CcceEEEEeccChHHhhCCCChhhhcccCCCCCCCCCCCCCceeEEEEeEEccCeEEEeeceeeeccccccHHHHHHHHH
Q 048249           89 GVPFIEAHVANDMRQLLKIPNIDVLEQLLPFKPHEGFDSDRSNLTLQVNYFGCGGMAIGLCFRHKVIDATTAAFFVKNWG  168 (426)
Q Consensus        89 gv~f~~~~~d~~~~~l~~~p~~~~~~~l~P~~~~~~~~~~~P~l~vQvt~~~cgG~~l~~~~~H~v~Dg~~~~~fl~~wa  168 (426)
                      ...+.+.+  .+-+++..      +....- .++  +....|++++.+-....+...|.+.+||.++||.|+..|++.+.
T Consensus       170 ~~~~~~~~--~~~~~~~~------~~~~~~-~~f--dl~~~pl~r~~l~~~~~~~~~l~~~~HH~i~Dg~S~~~l~~el~  238 (520)
T 2jgp_A          170 PFALAYSE--VTEEEARE------LVSSLV-QPF--DLEVAPLIRVSLLKIGEDRYVLFTDMHHSISDGVSSGILLAEWV  238 (520)
T ss_dssp             CCCCEEEE--CCHHHHHH------HHHHTC-CCC--CTTSSCCEEEEEEEEETTEEEEEEEEBGGGCCHHHHHHHHHHHH
T ss_pred             CCceEEEe--CCHHHHHH------HHHHhc-CCC--CCCCCcceeEEEEEEcCCcEEEEEEccceeecHhHHHHHHHHHH
Confidence            22222222  12111110      111110 111  22346888888777665778999999999999999999999999


Q ss_pred             HHhcCCCCCCCc-cc------cccccCCC-------------CCC-Cc--cccCcc-cccCCCCeeEEEEEeCHHHHHHH
Q 048249          169 VIARGAGEIKDL-II------DHASLFPA-------------RDL-SC--LAKSVD-EEFLKPESETKRFVFDGPTIASF  224 (426)
Q Consensus       169 ~~~rg~~~~~~P-~~------dr~~l~~~-------------~~~-p~--~~~~~~-~~~~~~~~~~~~f~~s~~~l~~L  224 (426)
                      +.+++......| .+      .+......             .+. |.  +....+ +...........+.++.+..++|
T Consensus       239 ~~Y~~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~yW~~~l~~~~~~~~lp~~~~~~~~~~~~~~~~~~~l~~~~~~~l  318 (520)
T 2jgp_A          239 QLYQGDVLPELRIQYKDFAVWQQEFSQSAAFHKQEAYWLQTFADDIPVLNLPTDFTRPSTQSFAGDQCTIGAGKALTEGL  318 (520)
T ss_dssp             HHHTTCCCCCCSCCHHHHHHHHHHHTTSHHHHHHHHHHHHHTSSCCCCCCCCCSSCCCSSCCCBEEEEEEECCHHHHHHH
T ss_pred             HHHccCCCCCCCCCHHHHHHHHHHhhcChhhHHHHHHHHHHhCCCCCcCCCCCCCCCCCCCCCCccEEEEeCCHHHHHHH
Confidence            999886322111 11      11000000             000 00  000000 11112334567889999999999


Q ss_pred             HHHhccCCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCcceEEEEEeeccccCCCCCCCccccceeeeeeeeecCCCCC
Q 048249          225 QETFTSFERRPTRFEVVSAVILGALITATRESDDESNVPERLDTIISVNLRQRMNPPFPEHCMGNIISGGLVYWPLEKKV  304 (426)
Q Consensus       225 k~~~~~~~~~~St~d~l~A~lW~~~~~Ar~~~~~~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~v~~~~~~~~~~~~~  304 (426)
                      ++.|...  .+|.+.++.|.+-..+.+-.+  .      ....+..++++|..-   --.+-+|+++......+.+..+.
T Consensus       319 ~~~a~~~--~~T~~~~l~aa~a~~L~~~~~--~------~dv~~g~~~~gR~~~---~~~~~vG~f~n~lplr~~~~~~~  385 (520)
T 2jgp_A          319 HQLAQAT--GTTLYMVLLAAYNVLLAKYAG--Q------EDIIVGTPITGRSHA---DLEPIVGMFVNTLAMRNKPQREK  385 (520)
T ss_dssp             HHHHHHH--TCCHHHHHHHHHHHHHHHHHT--C------SCEEEEEEECCCCSG---GGTTCCSCCCEEEEEEECCCTTS
T ss_pred             HHHHHHc--CCCHHHHHHHHHHHHHHHhcC--C------CCeEEEeccCCCCch---hhhccEEeeeeeeeEEecCCCCC
Confidence            9988753  578899888875555544422  1      467899999999752   23567788888777777766667


Q ss_pred             CHHHHHHHHHHHHHHh
Q 048249          305 DYGCLAKEIHESIKKV  320 (426)
Q Consensus       305 ~l~~~A~~ir~ai~~~  320 (426)
                      ++.++++.+++.+.+.
T Consensus       386 ~~~~~l~~v~~~~~~~  401 (520)
T 2jgp_A          386 TFSEFLQEVKQNALDA  401 (520)
T ss_dssp             BHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            8999999998887663


No 8  
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=98.62  E-value=7.9e-06  Score=82.65  Aligned_cols=272  Identities=11%  Similarity=0.035  Sum_probs=159.6

Q ss_pred             CcccCCcCcCC-------CC--CccceEEEEecCCCCCChhhHHHHHHHHHHHhhhcccccccccC--CCeEEEeCCCCc
Q 048249           22 STYKLSIIDQL-------TP--NVYFSIILLYSNAGESTAKTSDHLKKSLSNTLTHYYPLAGQLKY--DQLIVDCNDQGV   90 (426)
Q Consensus        22 ~~~~Ls~lD~~-------~~--~~~~~~~~~f~~~~~~~~~~~~~L~~sL~~~L~~~p~LaGrl~~--g~~~i~~~~~gv   90 (426)
                      ..+|||+.-+.       .+  .+++...+-++.+     ...++|++++.+++.++|.|--++..  |... .......
T Consensus        12 ~~~Pls~~Q~~~~~~~~~~~~~~y~~~~~~~l~g~-----ld~~~L~~A~~~lv~rh~~LRt~f~~~~~~~~-~v~~~~~   85 (493)
T 4hvm_A           12 GLRRASFLQRGAWRWLREAPPAAAFAARGLLGSGR-----IDDDRLAAAADEVLDAFPLLRVNFVDDDGLWM-RTRENAD   85 (493)
T ss_dssp             CEEECCHHHHHHHHHHTTSCGGGGEEEEEEEEESS-----CCHHHHHHHHHHHHHHCGGGGEEEEESSSEEE-EECSCCC
T ss_pred             CCCCCCHHHHHHHHHHhhCCCCcceeEEEEEEeCC-----CCHHHHHHHHHHHHHhchhceeEEEccCCEEE-EecCCCC
Confidence            46899887541       12  1233334444433     47899999999999999999988854  4443 3332224


Q ss_pred             ceEEEEecc-Ch--HHhhCCCChhhhcccCCCCCCCCCCCCCceeEEEEeEEccCeEEEeeceeeeccccccHHHHHHHH
Q 048249           91 PFIEAHVAN-DM--RQLLKIPNIDVLEQLLPFKPHEGFDSDRSNLTLQVNYFGCGGMAIGLCFRHKVIDATTAAFFVKNW  167 (426)
Q Consensus        91 ~f~~~~~d~-~~--~~l~~~p~~~~~~~l~P~~~~~~~~~~~P~l~vQvt~~~cgG~~l~~~~~H~v~Dg~~~~~fl~~w  167 (426)
                      .+.+.+... .-  .++.     ..+....-.+ +  +....|++++.+.....+...|.+.+||.++||.|+..+++.+
T Consensus        86 ~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~-f--dl~~~pl~r~~l~~~~~~~~~l~l~~HH~i~Dg~S~~~l~~~l  157 (493)
T 4hvm_A           86 ALVRSDLRGHPDPQARCV-----ELLRADRDRP-T--DPERDPLVRLHLVRLSETDVVLGVVAHQMLLDARSRYMVLGAV  157 (493)
T ss_dssp             CEEEEECTTSSSHHHHHH-----HHHHHHHSSC-C--CTTTSCSEEEEEEECSSSEEEEEEEEETTTCCHHHHHHHHHHH
T ss_pred             CceEEECCCCCchHHHHH-----HHHHHHhcCC-C--CCCCCCeEEEEEEEECCCcEEEEEecchhhccHHHHHHHHHHH
Confidence            443333210 00  1111     0111111111 1  1234588888887776566899999999999999999999999


Q ss_pred             HHHhcCCCCCCCcccc-----cc--ccCCCC-------------CCCccccCcccccCCCCeeEEEEEeCHHHHHHHHHH
Q 048249          168 GVIARGAGEIKDLIID-----HA--SLFPAR-------------DLSCLAKSVDEEFLKPESETKRFVFDGPTIASFQET  227 (426)
Q Consensus       168 a~~~rg~~~~~~P~~d-----r~--~l~~~~-------------~~p~~~~~~~~~~~~~~~~~~~f~~s~~~l~~Lk~~  227 (426)
                      .+.+.|.... .+..|     +.  .+....             +.|.. .  .............+.++.+..++|++.
T Consensus       158 ~~~Y~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~l~~~~~l-~--~~~~~~~~~~~~~~~l~~~~~~~l~~~  233 (493)
T 4hvm_A          158 WQAYYGRFRP-AQYRDFAEVADFHPLDRETVRVARHRWWSRRLPALPVR-G--GDGGPVGPPETSRLRVPGSRWQALTEP  233 (493)
T ss_dssp             HHHHTTCCCG-GGSBCGGGTTTCCTTCSHHHHHHHHHHHHHHGGGSCCC-C---------CCEEEEEEEEHHHHHHHHCC
T ss_pred             HHHhCCCCCC-cCHHHHHHHHhhhhcccChhhHHHHHHHHHhccCCCCC-C--CCCCCCCCCeeEEEEcCHHHHHHHHHH
Confidence            9999776432 11111     11  000000             00100 0  000011125677899999999999988


Q ss_pred             hccCCCCCc--hhhHHHHHHHHHHHHHhcCC-------CCCCCCCcceEEEEEeeccccCCCCCCCccccceeeeeeeee
Q 048249          228 FTSFERRPT--RFEVVSAVILGALITATRES-------DDESNVPERLDTIISVNLRQRMNPPFPEHCMGNIISGGLVYW  298 (426)
Q Consensus       228 ~~~~~~~~S--t~d~l~A~lW~~~~~Ar~~~-------~~~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~v~~~~~~~  298 (426)
                      |...  .+|  .+.++.|.+-..+.+-+...       .+    .....+..++++|..-   --.+.+|+++......+
T Consensus       234 a~~~--~vt~~~~~~l~aa~a~~L~~~~~~~~~~~~~~~g----~~dv~~g~~~~gR~~~---~~~~~vG~f~n~lplr~  304 (493)
T 4hvm_A          234 GGPL--GGNGSLAMAALTAWWLWTQGAGTGTDTGAGTGTG----KDSLYLSTEVDLRDHL---QLGSVVGPLTDRVVFGV  304 (493)
T ss_dssp             --------CHHHHHHHHHHHHHHHC--------------------CEEEEEEEEEHHHHT---TCCSBCSCCEEEEEEEE
T ss_pred             HHHc--CCCchHHHHHHHHHHHHHHHhhhcccccccCcCC----CCCEEEEeeccCCCCc---chhcCeEeeeceeEEEE
Confidence            8753  567  89988887654444431100       11    2568999999999762   34577888888777777


Q ss_pred             cCCC--CCCHHHHHHHHHHHHHHh
Q 048249          299 PLEK--KVDYGCLAKEIHESIKKV  320 (426)
Q Consensus       299 ~~~~--~~~l~~~A~~ir~ai~~~  320 (426)
                      ....  +.++.++++.+++.+.+.
T Consensus       305 ~~~~~~~~t~~~~l~~v~~~~~~~  328 (493)
T 4hvm_A          305 DLTGLREPSFRDLMSRTQAGFLDA  328 (493)
T ss_dssp             ECTTCSSCBHHHHHHHHHHHHHHH
T ss_pred             ecCCCcCCCHHHHHHHHHHHHHHH
Confidence            7665  778999999999888764


No 9  
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=98.62  E-value=1.4e-05  Score=79.17  Aligned_cols=253  Identities=12%  Similarity=0.020  Sum_probs=154.6

Q ss_pred             ccceEEEEecCCCCCChhhHHHHHHHHHHHhhhcccccccccC-CCeEEEeCCCCcceEEEEeccChHHhhCCCCh-h--
Q 048249           36 VYFSIILLYSNAGESTAKTSDHLKKSLSNTLTHYYPLAGQLKY-DQLIVDCNDQGVPFIEAHVANDMRQLLKIPNI-D--  111 (426)
Q Consensus        36 ~~~~~~~~f~~~~~~~~~~~~~L~~sL~~~L~~~p~LaGrl~~-g~~~i~~~~~gv~f~~~~~d~~~~~l~~~p~~-~--  111 (426)
                      +.+..++-++.+     ...++|++++.+++.++|.|--++.. ++ .+ .......+.+.+       +...++. .  
T Consensus        21 y~~~~~~~l~g~-----ld~~~L~~A~~~lv~rh~~LRt~f~~~~~-~v-~~~~~~~~~~~d-------~~~~~~~~~~~   86 (436)
T 1l5a_A           21 DTVAHSLRLTGP-----LDTTLLLRALHLTVSEIDLFRARFSAQGE-LY-WHPFSPPIDYQD-------LSIHLEAEPLA   86 (436)
T ss_dssp             SEEEEEEEEESS-----CCHHHHHHHHHHHHHTCGGGGEEECTTCC-EE-ECSSCCCCEEEE-------CTTCTTHHHHH
T ss_pred             cceeEEEEEeCC-----CCHHHHHHHHHHHHHHhheeEEEEEecCC-eE-CCCcCCCccEEe-------CCCCCCHHHHH
Confidence            345555555543     36889999999999999999988865 33 22 222222222222       1111110 0  


Q ss_pred             --hhcccCCCCCCCCCCCCCceeEEEEeEEccCeEEEeeceeeeccccccHHHHHHHHHHHhc----CCCCCC-Ccccc-
Q 048249          112 --VLEQLLPFKPHEGFDSDRSNLTLQVNYFGCGGMAIGLCFRHKVIDATTAAFFVKNWGVIAR----GAGEIK-DLIID-  183 (426)
Q Consensus       112 --~~~~l~P~~~~~~~~~~~P~l~vQvt~~~cgG~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r----g~~~~~-~P~~d-  183 (426)
                        .++...- .++  +....|++++.+-....+...|.+.+||.++||.|+..|++.+.+.++    |.+... .+.+. 
T Consensus        87 ~~~~~~~~~-~~f--dl~~~pl~r~~l~~~~~~~~~l~~~~HH~i~Dg~S~~~l~~~l~~~Y~~~~~g~~~~~~~~~~~~  163 (436)
T 1l5a_A           87 WRQIEQDLQ-RSS--TLIDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQSLLSGQTPTAAFKPYQS  163 (436)
T ss_dssp             HHHHHHHHT-SCC--CCBTSCSCEEEEEEEETTEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCHHH
T ss_pred             HHHHHHHhc-CCC--CcCCCCCeEEEEEEEcCCEEEEEEeehhheecHhHHHHHHHHHHHHHHHHhcCCCCCCCccCHHH
Confidence              1111110 111  223458888887766557899999999999999999999999999887    433211 11110 


Q ss_pred             -----ccccCCCC-------------CCCccccCcc--cccCCCCeeEEEEEeCHHHHHHHHHHhccCCCCCchhhHHHH
Q 048249          184 -----HASLFPAR-------------DLSCLAKSVD--EEFLKPESETKRFVFDGPTIASFQETFTSFERRPTRFEVVSA  243 (426)
Q Consensus       184 -----r~~l~~~~-------------~~p~~~~~~~--~~~~~~~~~~~~f~~s~~~l~~Lk~~~~~~~~~~St~d~l~A  243 (426)
                           +..+....             +.|... ..+  ............+.++.+..++|++.|...  .+|.+.++.|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~W~~~l~~~~~~~-~lp~~~~~~~~~~~~~~~~l~~~~~~~l~~~a~~~--~~t~~~~l~a  240 (436)
T 1l5a_A          164 YLEEEAAYLTSHRYWQDKQFWQGYLREAPDLT-LTSATYDPQLSHAVSLSYTLNSQLNHLLLKLANAN--QIGWPDALVA  240 (436)
T ss_dssp             HHHHHHHHHTSHHHHHHHHHHHHHHHTSCCCC-BCCTTCCGGGCCEEEEEEECCHHHHHHHHHHHHHT--TCCHHHHHHH
T ss_pred             HHHHHHHhhccHhHHHHHHHHHHHhcCCCCcc-cCCCCCCCCcccceeeEEecCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence                 00000000             001000 000  011123345778999999999999998763  5788998888


Q ss_pred             HHHHHHHHHhcCCCCCCCCCcceEEEEEeeccccCCCCCCCccccceeeeeeeeecCCCCCCHHHHHHHHHHHHHHh
Q 048249          244 VILGALITATRESDDESNVPERLDTIISVNLRQRMNPPFPEHCMGNIISGGLVYWPLEKKVDYGCLAKEIHESIKKV  320 (426)
Q Consensus       244 ~lW~~~~~Ar~~~~~~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~v~~~~~~~~~~~~~~l~~~A~~ir~ai~~~  320 (426)
                      .+-..+.+-.  .       ....+..++++|..  + --.+-+|+++......+....+.++.++++.+++.+.+.
T Consensus       241 a~~~~L~~~~--g-------~dv~ig~~~~~R~~--~-~~~~~vG~f~n~lplr~~~~~~~t~~~~l~~v~~~~~~~  305 (436)
T 1l5a_A          241 LCALYLESAE--P-------DAPWLWLPFMNRWG--S-VAANVPGLMVNSLPLLRLSAQQTSLGNYLKQSGQAIRSL  305 (436)
T ss_dssp             HHHHHHHHHS--T-------TCCEEEEEECCCTT--S-GGGGSCSCCCEEEEEECCCCTTCBHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhh--C-------CceEEeeecccCCC--h-HHhcCcceEEEEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence            7544444432  1       25689999999965  2 235677888877777776655678999999999888764


No 10 
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=98.46  E-value=7.2e-05  Score=74.75  Aligned_cols=277  Identities=11%  Similarity=0.055  Sum_probs=159.6

Q ss_pred             CcccCCcCcC-----CCC--CccceEEEEecCCCCCChhhHHHHHHHHHHHhhhcccccccccC--CCeEEEeCC---CC
Q 048249           22 STYKLSIIDQ-----LTP--NVYFSIILLYSNAGESTAKTSDHLKKSLSNTLTHYYPLAGQLKY--DQLIVDCND---QG   89 (426)
Q Consensus        22 ~~~~Ls~lD~-----~~~--~~~~~~~~~f~~~~~~~~~~~~~L~~sL~~~L~~~p~LaGrl~~--g~~~i~~~~---~g   89 (426)
                      ..+|||+..+     ..+  ..|. ..+.|....   ....+.|+++|.+++.+++.|--++..  |.+.-....   ..
T Consensus        16 ~~~pls~~Q~~~~~~~~~~~~~y~-~~~~~~l~g---~ld~~~L~~Al~~lv~rh~~LRt~f~~~~~~~~q~v~~~~~~~   91 (466)
T 2xhg_A           16 GNVPLTPIQKWFFGKNFTNTGHWN-QSSVLYRPE---GFDPKVIQSVMDKIIEHHDALRMVYQHENGNVVQHNRGLGGQL   91 (466)
T ss_dssp             EECCCCHHHHHHHHTTCTTTTCBE-EEEEEEETT---CCCHHHHHHHHHHHHHHSGGGGEEEECGGGCCEEEECCSSSCC
T ss_pred             CCCCCCHHHHHHHhCCCCCcCcce-eEEEEEcCC---CCCHHHHHHHHHHHHHhChHhheEEecCCCceeeecccccccc
Confidence            4688887654     221  1232 333444332   247899999999999999999988865  332212211   12


Q ss_pred             cceEEEEec--cChHHhhCCCChhhhcccCCCCCCCCCCCCCceeEEEEeEEccCeEEEeeceeeeccccccHHHHHHHH
Q 048249           90 VPFIEAHVA--NDMRQLLKIPNIDVLEQLLPFKPHEGFDSDRSNLTLQVNYFGCGGMAIGLCFRHKVIDATTAAFFVKNW  167 (426)
Q Consensus        90 v~f~~~~~d--~~~~~l~~~p~~~~~~~l~P~~~~~~~~~~~P~l~vQvt~~~cgG~~l~~~~~H~v~Dg~~~~~fl~~w  167 (426)
                      ..+.+.+..  ...++..     ..+.... ..++  +....|++++.+.... ++-.|-+.+||.++||.|+..|++.+
T Consensus        92 ~~~~~~d~~~~~~~~~~~-----~~~~~~~-~~~f--dl~~~pl~r~~l~~~~-~~~~l~l~~HH~i~Dg~S~~~l~~el  162 (466)
T 2xhg_A           92 YDFFSYNLTAQPDVQQAI-----EAETQRL-HSSM--NLQEGPLVKVALFQTL-HGDHLFLAIHHLVVDGISWRILFEDL  162 (466)
T ss_dssp             CEEEEEECTTCSCHHHHH-----HHHHHHH-HTTC--CTTTCCCEEEEEEEET-TEEEEEEEEEGGGCCHHHHHHHHHHH
T ss_pred             ceeEEEecCCcccHHHHH-----HHHHHHH-Hhcc--CCCCCCeEEEEEEEcC-CCCEEEEEeeeeeechhhHHHHHHHH
Confidence            222222211  0111110     0010000 0111  2234588888887776 45457799999999999999999999


Q ss_pred             HHHhc----CCCCCCC--c-cc-c-----ccccCCC---C----------CCC--ccccCcc-cccCCCCeeEEEEEeCH
Q 048249          168 GVIAR----GAGEIKD--L-II-D-----HASLFPA---R----------DLS--CLAKSVD-EEFLKPESETKRFVFDG  218 (426)
Q Consensus       168 a~~~r----g~~~~~~--P-~~-d-----r~~l~~~---~----------~~p--~~~~~~~-~~~~~~~~~~~~f~~s~  218 (426)
                      .+.++    |......  + .+ |     +......   .          +.|  .+....+ ............+.++.
T Consensus       163 ~~~Y~~~~~g~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~W~~~l~~~~~~~lp~~~~~~~~~~~~~~~~~~~l~~  242 (466)
T 2xhg_A          163 ATGYAQALAGQAISLPEKTDSFQSWSQWLQEYANEADLLSEIPYWESLESQAKNVSLPKDYEVTDCKQKSVRNMRIRLHP  242 (466)
T ss_dssp             HHHHHHHHTTCCCCCCCCCSCHHHHHHHHHHHTTSHHHHTTHHHHHHHHHHCCCCCCCCSSCCSSCBGGGEEEEEEECCH
T ss_pred             HHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhcCccchhhhHHHHHhhccCCcccCCccccccccccccceEEEEEcCH
Confidence            99875    3321111  1 11 0     0000000   0          001  0000000 00112234567889999


Q ss_pred             HHHHHHHHHhccCCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCcceEEEEEeeccccCCC-CCCCccccceeeeeeee
Q 048249          219 PTIASFQETFTSFERRPTRFEVVSAVILGALITATRESDDESNVPERLDTIISVNLRQRMNP-PFPEHCMGNIISGGLVY  297 (426)
Q Consensus       219 ~~l~~Lk~~~~~~~~~~St~d~l~A~lW~~~~~Ar~~~~~~~~~~~~~~l~~~vd~R~rl~p-plp~~Y~GN~v~~~~~~  297 (426)
                      +..++|++.+... ..+|.++++.|.+-..+.+-.+   .     ....+.+++++|....+ +--.+-+|+++......
T Consensus       243 ~~~~~l~~~~~~~-~~~t~~~~llaa~~~~l~~~~~---~-----~dv~ig~~~~gR~~~~~~~~~~~~vG~f~n~lplr  313 (466)
T 2xhg_A          243 EETEQLLKHANQA-YQTEINDLLLAALGLAFAEWSK---L-----AQIVIHLEGHGREDIIEQANVARTVGWFTSQYPVL  313 (466)
T ss_dssp             HHHHHHHHTGGGT-TTCCHHHHHHHHHHHHHHHHHC---C-----SEEEEEEEECCCCSCSTTCCCTTCCSCCCEEEEEE
T ss_pred             HHHHHHHHHhHHh-hCCCHHHHHHHHHHHHHHHHhC---C-----CceEEEecCCCCCccccCCCccccccceeeeccEE
Confidence            9999998877431 3578899888876555555432   1     46789999999976421 12356778888777777


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHh
Q 048249          298 WPLEKKVDYGCLAKEIHESIKKV  320 (426)
Q Consensus       298 ~~~~~~~~l~~~A~~ir~ai~~~  320 (426)
                      +.+..+.++.++++.|++.+.++
T Consensus       314 ~~~~~~~~~~~~l~~v~~~~~~~  336 (466)
T 2xhg_A          314 LDLKQTAPLSDYIKLTKENMRKI  336 (466)
T ss_dssp             EECSCCCSHHHHHHHHHHHHHHS
T ss_pred             EecCCCCCHHHHHHHHHHHHHhC
Confidence            66655678999999999998776


No 11 
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=98.25  E-value=0.00011  Score=83.33  Aligned_cols=256  Identities=12%  Similarity=0.015  Sum_probs=154.8

Q ss_pred             cceEEEEecCCCCCChhhHHHHHHHHHHHhhhcccccccccC--C--CeEEEeCCCCcceEEEEeccChHHhhCCCCh--
Q 048249           37 YFSIILLYSNAGESTAKTSDHLKKSLSNTLTHYYPLAGQLKY--D--QLIVDCNDQGVPFIEAHVANDMRQLLKIPNI--  110 (426)
Q Consensus        37 ~~~~~~~f~~~~~~~~~~~~~L~~sL~~~L~~~p~LaGrl~~--g--~~~i~~~~~gv~f~~~~~d~~~~~l~~~p~~--  110 (426)
                      .++.++-++.+     .++++|++++.+++.+++.|--++..  +  -..+........+.+.+       +...+..  
T Consensus        36 ~~~~~~~l~g~-----ld~~~l~~A~~~lv~rH~~LRt~f~~~~~~~p~Q~v~~~~~~~~~~~d-------~~~~~~~~~  103 (1304)
T 2vsq_A           36 LEQITMKVKGS-----LNIKCLEESMNVIMDRYDVFRTVFIHEKVKRPVQVVLKKRQFHIEEID-------LTHLTGSEQ  103 (1304)
T ss_dssp             EEEEEEEEEEC-----CCHHHHHHHHHHHHHHCGGGGEEEECSSCSSCEEEEESCCCCCEEEEE-------CTTSCHHHH
T ss_pred             EEEEEEEEcCC-----cCHHHHHHHHHHHHHhhhhceEEEEEcCCCeEEEEECCCCCCceEEEE-------CCCCCchhH
Confidence            45555555544     46899999999999999999988754  1  12333332223332222       1111100  


Q ss_pred             -hhhcccCC---CCCCCCCCCCCceeEEEEeEEccCeEEEeeceeeeccccccHHHHHHHHHHHhcC----CCCCCC--c
Q 048249          111 -DVLEQLLP---FKPHEGFDSDRSNLTLQVNYFGCGGMAIGLCFRHKVIDATTAAFFVKNWGVIARG----AGEIKD--L  180 (426)
Q Consensus       111 -~~~~~l~P---~~~~~~~~~~~P~l~vQvt~~~cgG~~l~~~~~H~v~Dg~~~~~fl~~wa~~~rg----~~~~~~--P  180 (426)
                       ..++.++-   ..++  +....|++++.+.....+...|.+.+||.++||.|+..+++.+++.+++    .+...+  +
T Consensus       104 ~~~~~~~~~~~~~~~f--dl~~~pl~r~~l~~~~~~~~~l~~~~HHii~DG~S~~~l~~el~~~Y~~~~~g~~~~l~~~~  181 (1304)
T 2vsq_A          104 TAKINEYKEQDKIRGF--DLTRDIPMRAAIFKKAEESFEWVWSYHHIILDGWCFGIVVQDLFKVYNALREQKPYSLPPVK  181 (1304)
T ss_dssp             HHHHHHHHHHHHHHCC--CTTTSCSEEEEEEEEETTEEEEEEEEEGGGCCHHHHHHHHHHHHHHHHHHHTTCCCCCCCCC
T ss_pred             HHHHHHHHHHHhcCCC--CCCCCCcEEEEEEEECCCcEEEEEecCceeechhhHHHHHHHHHHHHHHhhcCCCCCCCCcc
Confidence             01111000   0011  2234589988887776678999999999999999999999999998764    221111  1


Q ss_pred             cc-c-----cc------------ccCC---CCCCCccccCcccccCCCCeeEEEEEeCHHHHHHHHHHhccCCCCCchhh
Q 048249          181 II-D-----HA------------SLFP---ARDLSCLAKSVDEEFLKPESETKRFVFDGPTIASFQETFTSFERRPTRFE  239 (426)
Q Consensus       181 ~~-d-----r~------------~l~~---~~~~p~~~~~~~~~~~~~~~~~~~f~~s~~~l~~Lk~~~~~~~~~~St~d  239 (426)
                      .+ |     ++            .+..   +..+|...   .............|.++.+..++||+.|...  .+|.+.
T Consensus       182 ~y~d~~~~~~~~~~~~~~~yW~~~L~~~~~~~~lp~~~---~~~~~~~~~~~~~~~l~~~~~~~L~~~a~~~--~~T~~~  256 (1304)
T 2vsq_A          182 PYKDYIKWLEKQDKQASLRYWREYLEGFEGQTTFAEQR---KKQKDGYEPKELLFSPSEAETKAFTELAKSQ--HTTLST  256 (1304)
T ss_dssp             CTHHHHHHHHTSCHHHHHHHHHHHHTTCCCCCTTTTTC---CCSSCCCCEEEEEECCCHHHHHHHHHHHHHT--TCCHHH
T ss_pred             cHHHHHHHHhcchhhHHHHHHHHHhCCCCccccCCCCC---CccccccCcceEEEecCHHHHHHHHHHHHHc--CCCHHH
Confidence            11 1     00            0000   00111100   0011122345667889999999999998864  578899


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcceEEEEEeeccccCCCCCCCccccceeeeeeeeecCCCCCCHHHHHHHHHHHHHH
Q 048249          240 VVSAVILGALITATRESDDESNVPERLDTIISVNLRQRMNPPFPEHCMGNIISGGLVYWPLEKKVDYGCLAKEIHESIKK  319 (426)
Q Consensus       240 ~l~A~lW~~~~~Ar~~~~~~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~v~~~~~~~~~~~~~~l~~~A~~ir~ai~~  319 (426)
                      +|.|.+-..+.|--.   .     ....+..++++|.+..+. -++-+|+++.....++.++.+.++.++.+.+++...+
T Consensus       257 vllaa~a~~L~r~tg---~-----~dvv~G~pvsgR~~~~~~-~~~~vG~fvntlplr~~~~~~~s~~~ll~~v~~~~~~  327 (1304)
T 2vsq_A          257 ALQAVWSVLISRYQQ---S-----GDLAFGTVVSGRPAEIKG-VEHMVGLFINVVPRRVKLSEGITFNGLLKRLQEQSLQ  327 (1304)
T ss_dssp             HHHHHHHHHHHHHHT---C-----SEEEEEEEECCCCTTSTT-GGGCCSSCCEEEEEEEECCTTCBHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC---C-----CCEEEEEEeCCCCccchh-hhcccccceeEEEEEecCCCCCcHHHHHHHHHHHHHH
Confidence            888865444444321   1     467999999999753222 2567788887777777666667899999999988766


Q ss_pred             h
Q 048249          320 V  320 (426)
Q Consensus       320 ~  320 (426)
                      .
T Consensus       328 a  328 (1304)
T 2vsq_A          328 S  328 (1304)
T ss_dssp             H
T ss_pred             h
Confidence            3


No 12 
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A*
Probab=97.96  E-value=0.0019  Score=65.47  Aligned_cols=237  Identities=12%  Similarity=0.007  Sum_probs=132.3

Q ss_pred             ChhhHHHHHHHHHHHhhhcccccccccC---CCeEEEeCCC-C---c------ceEEEEeccChHHhhCCCChh--hhcc
Q 048249           51 TAKTSDHLKKSLSNTLTHYYPLAGQLKY---DQLIVDCNDQ-G---V------PFIEAHVANDMRQLLKIPNID--VLEQ  115 (426)
Q Consensus        51 ~~~~~~~L~~sL~~~L~~~p~LaGrl~~---g~~~i~~~~~-g---v------~f~~~~~d~~~~~l~~~p~~~--~~~~  115 (426)
                      .++..++||.|...+--++|-+|+++..   +.....|.-. .   +      -|.+.+.+.+-+|+...-...  ...+
T Consensus        71 ~~~l~~~lr~AW~~lR~~hP~iA~~v~~d~~~~~~~~Y~~~~~~~~~~~Wl~~Tf~v~~~~~t~~e~~~~~~~~r~~~~~  150 (519)
T 3fot_A           71 LQNLKEMFELALLDARFEHPECACTVSWDDEVPAIITYESPESNESARDWARGCIHVQPTAKSALDLWSEMEEGRAAAND  150 (519)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGGCEEECCSSSSCEEEEECCSSHHHHHHHHHHHEEEEECSCCHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHHhhCCcceeEEeeCCCCcccEEEecCCCHHHHHHHHHhcEEEeCCCCCHHHHHHhhhhhhccccc
Confidence            4677889999999998999999999874   2223333210 1   1      233333334444431000000  0000


Q ss_pred             cCCCCCCCCCCCCCceeEEEEeE------EccC--eEEEeeceeeeccccccHHHHHHHHHHHhcCC---CC-CCCcccc
Q 048249          116 LLPFKPHEGFDSDRSNLTLQVNY------FGCG--GMAIGLCFRHKVIDATTAAFFVKNWGVIARGA---GE-IKDLIID  183 (426)
Q Consensus       116 l~P~~~~~~~~~~~P~l~vQvt~------~~cg--G~~l~~~~~H~v~Dg~~~~~fl~~wa~~~rg~---~~-~~~P~~d  183 (426)
                      ..|..        .+.+.+=...      +. +  -.-|.+.+||.++||.|...|++.+-+.....   .. ...|.++
T Consensus       151 ~~p~~--------~~~l~~v~~~~~~~~~~p-~~~~~~lv~~~~H~~~DG~g~~~f~~~ll~~L~~~~~~~~~~~~~~~~  221 (519)
T 3fot_A          151 NTPSK--------SIELFLLSDVSTDSTPIP-QDATVEILFHSNHLFWDGIGCRKFVGDLFRLVGSYIGRSDSREMKKIQ  221 (519)
T ss_dssp             CCCCC--------SCEEEEEESSSSTTSCCC-TTCEEEEEEEECGGGCCHHHHHHHHHHHHHHHTTSTTC-CGGGSCCCC
T ss_pred             CCCcc--------ceEEEEEeccccccccCC-CCceEEEEEEeCceeEchHhHHHHHHHHHHHHHhhhccCCccCCCcCC
Confidence            11110        1111100000      22 3  46677889999999999999999887766532   11 1233332


Q ss_pred             ----ccccCCCC----CCCcc--ccC--------------------cccccCCCCeeEEEEEeCHHHHHHHHHHhccC-C
Q 048249          184 ----HASLFPAR----DLSCL--AKS--------------------VDEEFLKPESETKRFVFDGPTIASFQETFTSF-E  232 (426)
Q Consensus       184 ----r~~l~~~~----~~p~~--~~~--------------------~~~~~~~~~~~~~~f~~s~~~l~~Lk~~~~~~-~  232 (426)
                          ...+.|+-    +.|.-  .+.                    ++.......-....+.|+.++.++|++.|++. +
T Consensus       222 ~g~E~~~L~P~~e~~~~~p~~~~~~e~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ls~~~t~~L~~~ck~~~~  301 (519)
T 3fot_A          222 WGQEIKNLSPPVVDSLKLDINTLGSEFDDKCTEYTSALVANYKSRGMKFQPGLALPRCVIHKLSADESIDIVKAVKTRLG  301 (519)
T ss_dssp             TTTTGGGSCCCTGGGBSSCGGGCCHHHHHHHHHHHHHHHHHHHSCCSBCCCCCCCEEEEEEECCHHHHHHHHHHHHHHTC
T ss_pred             CCcccccCCcCHHHHhCCCCCCCCHHHHHHHHHHHHHhhcCCCcccCCCCCCCCCcceEEEEcCHHHHHHHHHHHHhcCC
Confidence                12233321    12211  000                    00011112234567899999999999999874 5


Q ss_pred             CCCchhhHHHHHHHHHHHHHhcC-CCCCCCCCcceEEEEEeeccccCCCCCCCccccceeeeeeeeec
Q 048249          233 RRPTRFEVVSAVILGALITATRE-SDDESNVPERLDTIISVNLRQRMNPPFPEHCMGNIISGGLVYWP  299 (426)
Q Consensus       233 ~~~St~d~l~A~lW~~~~~Ar~~-~~~~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~v~~~~~~~~  299 (426)
                      +.+|-+.+|.|.+-.++.+.... ...   ......+.++||+|+++.++.-.+|||.+........+
T Consensus       302 ~g~Tvt~~l~Aa~~~al~~~~~~~~~~---~~~~~~~~~pvnlR~~l~~~~~~n~~~~~~~~~~~~v~  366 (519)
T 3fot_A          302 PGFTISHLTQAAIVLALLDHLKPNDLS---DDEVFISPTSVDGRRWLREDIASNFYAMCQTAAVVRIE  366 (519)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHC----CC---TTCCEEEEEEEECGGGBCHHHHTSCCSCCEEEEEEEEC
T ss_pred             CCeeHHHHHHHHHHHHHHhhcCCcccC---CCccEEEEeeeeccccCCCcccccccceeeeeeeeEec
Confidence            57899999988776666653211 011   12457899999999999765556788988887666553


No 13 
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=69.29  E-value=2.7  Score=36.93  Aligned_cols=44  Identities=14%  Similarity=0.163  Sum_probs=32.2

Q ss_pred             CceeEEEEeEEccCe--EEEeeceeeeccccccHHHHHHHHHHHhc
Q 048249          129 RSNLTLQVNYFGCGG--MAIGLCFRHKVIDATTAAFFVKNWGVIAR  172 (426)
Q Consensus       129 ~P~l~vQvt~~~cgG--~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r  172 (426)
                      .|++.+--..-+.|.  +-|++++||.+.||.-..+|++.+.+...
T Consensus       164 ~PIi~~G~~~~~~~~~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le  209 (213)
T 3cla_A          164 APIITMAKYQQEGDRLLLPLSVQVHHAVCDGFHVARFINRLQELCN  209 (213)
T ss_dssp             SCEEEEECCEEETTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHT
T ss_pred             ccEEEeeEEEEECCeEEEEEEEEEcccccChHHHHHHHHHHHHHHH
Confidence            477754221112233  67899999999999999999999998764


No 14 
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=68.06  E-value=3  Score=36.79  Aligned_cols=28  Identities=25%  Similarity=0.381  Sum_probs=25.2

Q ss_pred             EEEeeceeeeccccccHHHHHHHHHHHh
Q 048249          144 MAIGLCFRHKVIDATTAAFFVKNWGVIA  171 (426)
Q Consensus       144 ~~l~~~~~H~v~Dg~~~~~fl~~wa~~~  171 (426)
                      +-|++++||.+.||.-..+|++.+.+..
T Consensus       189 m~lsls~DHRvvDG~~aa~Fl~~lk~~l  216 (217)
T 2i9d_A          189 MPIAMTIHHGFIDGHHLSLFYKKVEDFL  216 (217)
T ss_dssp             EEEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecchhhChHHHHHHHHHHHHHh
Confidence            6789999999999999999999998754


No 15 
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=67.37  E-value=3.1  Score=36.70  Aligned_cols=44  Identities=14%  Similarity=0.160  Sum_probs=32.4

Q ss_pred             CceeEEEEeEEccCe--EEEeeceeeeccccccHHHHHHHHHHHhc
Q 048249          129 RSNLTLQVNYFGCGG--MAIGLCFRHKVIDATTAAFFVKNWGVIAR  172 (426)
Q Consensus       129 ~P~l~vQvt~~~cgG--~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r  172 (426)
                      .|++.+--..-+.|.  +-|++++||.+.||.-..+|++.+.+...
T Consensus       168 ~pIi~~G~~~~~~~r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le  213 (219)
T 1q23_A          168 APVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCD  213 (219)
T ss_dssp             SCEEEECCCEEETTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred             eEEEecccEEEECCcEEEEEEEEEEchhhChHHHHHHHHHHHHHHh
Confidence            477654322222122  68899999999999999999999988764


No 16 
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=64.94  E-value=3.8  Score=36.67  Aligned_cols=29  Identities=21%  Similarity=0.426  Sum_probs=27.0

Q ss_pred             EEEeeceeeeccccccHHHHHHHHHHHhc
Q 048249          144 MAIGLCFRHKVIDATTAAFFVKNWGVIAR  172 (426)
Q Consensus       144 ~~l~~~~~H~v~Dg~~~~~fl~~wa~~~r  172 (426)
                      +-|++++||.+.||.-...|++.+.+...
T Consensus       204 m~lsls~DHRviDGa~aa~Fl~~lk~~le  232 (239)
T 3b8k_A          204 MSVTLSCDHRVVDGAVGAQWLAEFRKYLE  232 (239)
T ss_dssp             EEEEECCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEcceeechHHHHHHHHHHHHHHh
Confidence            78999999999999999999999998765


No 17 
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=62.83  E-value=4.2  Score=36.20  Aligned_cols=30  Identities=20%  Similarity=0.386  Sum_probs=27.3

Q ss_pred             EEEeeceeeeccccccHHHHHHHHHHHhcC
Q 048249          144 MAIGLCFRHKVIDATTAAFFVKNWGVIARG  173 (426)
Q Consensus       144 ~~l~~~~~H~v~Dg~~~~~fl~~wa~~~rg  173 (426)
                      +-|+++++|.+.||.-..+|++.+.+....
T Consensus       196 m~lsls~DHRviDGa~aa~Fl~~lk~~le~  225 (233)
T 1scz_A          196 MYLALSYDHRLIDGRESVGFLVTIKELLED  225 (233)
T ss_dssp             EEEEEEEETTTCCHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEEcceeechHHHHHHHHHHHHHHhC
Confidence            669999999999999999999999987754


No 18 
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=62.72  E-value=4.2  Score=36.44  Aligned_cols=30  Identities=27%  Similarity=0.491  Sum_probs=27.2

Q ss_pred             EEEeeceeeeccccccHHHHHHHHHHHhcC
Q 048249          144 MAIGLCFRHKVIDATTAAFFVKNWGVIARG  173 (426)
Q Consensus       144 ~~l~~~~~H~v~Dg~~~~~fl~~wa~~~rg  173 (426)
                      +-|+++++|.+.||.-...|++.+.+....
T Consensus       208 m~lsls~DHRviDGa~aa~Fl~~lk~~le~  237 (243)
T 1dpb_A          208 LPLSLSYDCRVINGAAAARFTKRLGDLLAD  237 (243)
T ss_dssp             EEEEEEEETTTSCHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEECcccccHHHHHHHHHHHHHHHhC
Confidence            679999999999999999999999987653


No 19 
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=62.39  E-value=3.7  Score=36.33  Aligned_cols=30  Identities=23%  Similarity=0.427  Sum_probs=27.3

Q ss_pred             EEEeeceeeeccccccHHHHHHHHHHHhcC
Q 048249          144 MAIGLCFRHKVIDATTAAFFVKNWGVIARG  173 (426)
Q Consensus       144 ~~l~~~~~H~v~Dg~~~~~fl~~wa~~~rg  173 (426)
                      +-|+++++|.+.||.-...|++.+.+....
T Consensus       187 m~lsls~DHRviDGa~aa~Fl~~l~~~le~  216 (224)
T 3rqc_A          187 MYLSLSCDHRLIDGAVATRFIVDLKKVIED  216 (224)
T ss_dssp             CCEEEEEETTTSCHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEEeccceecHHHHHHHHHHHHHHHhC
Confidence            558999999999999999999999998765


No 20 
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=60.97  E-value=4.7  Score=36.59  Aligned_cols=30  Identities=23%  Similarity=0.459  Sum_probs=27.1

Q ss_pred             EEEeeceeeeccccccHHHHHHHHHHHhcC
Q 048249          144 MAIGLCFRHKVIDATTAAFFVKNWGVIARG  173 (426)
Q Consensus       144 ~~l~~~~~H~v~Dg~~~~~fl~~wa~~~rg  173 (426)
                      +-|+++++|.+.||.-...|++.+.+.+..
T Consensus       224 m~lsls~DHRviDGa~aa~Fl~~lk~~Le~  253 (262)
T 2ii3_A          224 MNVSWSADHRIIDGATVSRFSNLWKSYLEN  253 (262)
T ss_dssp             EEEEEEEETTTCCHHHHHHHHHHHHHHHHS
T ss_pred             eEEEEEECcceecHHHHHHHHHHHHHHHhC
Confidence            679999999999999999999999987653


No 21 
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=55.04  E-value=6.9  Score=35.36  Aligned_cols=30  Identities=17%  Similarity=0.307  Sum_probs=27.6

Q ss_pred             EEEeeceeeeccccccHHHHHHHHHHHhcC
Q 048249          144 MAIGLCFRHKVIDATTAAFFVKNWGVIARG  173 (426)
Q Consensus       144 ~~l~~~~~H~v~Dg~~~~~fl~~wa~~~rg  173 (426)
                      +-|+++++|.+.||.-...|++.+.+....
T Consensus       210 m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~  239 (256)
T 3mae_A          210 VNLCLSIDHRILDGLLAGKFLQAIKANVEK  239 (256)
T ss_dssp             EEEEEEEETTTCCHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEEccccccHHHHHHHHHHHHHHHhC
Confidence            459999999999999999999999998775


No 22 
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=53.42  E-value=7.6  Score=34.93  Aligned_cols=30  Identities=23%  Similarity=0.419  Sum_probs=27.4

Q ss_pred             EEEeeceeeeccccccHHHHHHHHHHHhcC
Q 048249          144 MAIGLCFRHKVIDATTAAFFVKNWGVIARG  173 (426)
Q Consensus       144 ~~l~~~~~H~v~Dg~~~~~fl~~wa~~~rg  173 (426)
                      +-|+++++|.+.||.-...|++.+.+....
T Consensus       205 m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~  234 (250)
T 3l60_A          205 MTLTCVFDHRVVDGAQVAQFMCELRDLIES  234 (250)
T ss_dssp             EEEEEEEETTTCCHHHHHHHHHHHHHHHHS
T ss_pred             eEEEEEecccccCHHHHHHHHHHHHHHHhC
Confidence            568999999999999999999999998764


No 23 
>1x93_A Hypothetical protein HP0222; JHP0208, transcription, regula METJ, MNT, PArg, COPG, REPA; NMR {Helicobacter pylori} SCOP: a.43.1.3
Probab=47.75  E-value=25  Score=22.53  Aligned_cols=37  Identities=16%  Similarity=0.184  Sum_probs=27.0

Q ss_pred             EEEEEeCHHHHHHHHHHhccCCCCCchhhHHHHHHHHHHHHHh
Q 048249          211 TKRFVFDGPTIASFQETFTSFERRPTRFEVVSAVILGALITAT  253 (426)
Q Consensus       211 ~~~f~~s~~~l~~Lk~~~~~~~~~~St~d~l~A~lW~~~~~Ar  253 (426)
                      ...|+||.++-+.|++.+.++.      |.+..++=+.|.++.
T Consensus         3 ~Vs~Y~SkEey~~L~klA~eE~------eSV~sfIKR~IlK~l   39 (55)
T 1x93_A            3 AVSLYFSDEQYQKLEKMANEEE------ESVGSYIKRYILKAL   39 (55)
T ss_dssp             EEEEEECHHHHHHHHHHHHHTT------SCTTHHHHHHHHHHH
T ss_pred             eEEEEecHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence            4579999999999999998653      334455556665554


No 24 
>2k1o_A Putative; repressor, transcriptional regulator, D binding, ribbon-helix-helix, HP0564, JHP0511, unknown funct regulation; NMR {Helicobacter pylori}
Probab=41.56  E-value=69  Score=21.29  Aligned_cols=43  Identities=7%  Similarity=0.035  Sum_probs=33.3

Q ss_pred             CCeeEEEEEeCHHHHHHHHHHhccCCCCCchhhHHHHHHHHHHHHHhcC
Q 048249          207 PESETKRFVFDGPTIASFQETFTSFERRPTRFEVVSAVILGALITATRE  255 (426)
Q Consensus       207 ~~~~~~~f~~s~~~l~~Lk~~~~~~~~~~St~d~l~A~lW~~~~~Ar~~  255 (426)
                      .+.-...|+||.|+-+.|.+.|.++      -|.+..+|=+.|.++..-
T Consensus        13 k~~~~Vs~Y~SkEey~~L~klA~eE------~eSV~sfIKR~IlK~l~y   55 (66)
T 2k1o_A           13 KRNFSVTFYLSKEEHDVLRRLADEE------VESVNSFVKRHILKTIIY   55 (66)
T ss_dssp             CCCEEEEEEEEHHHHHHHHHHHHTT------CSCHHHHHHHHHHHHHCS
T ss_pred             ccceEEEEEecHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence            3445678999999999999999865      456777887888777653


No 25 
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=39.08  E-value=31  Score=26.65  Aligned_cols=41  Identities=17%  Similarity=0.485  Sum_probs=31.5

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhhhcccccccccC----CCeEEEeC
Q 048249           40 IILLYSNAGESTAKTSDHLKKSLSNTLTHYYPLAGQLKY----DQLIVDCN   86 (426)
Q Consensus        40 ~~~~f~~~~~~~~~~~~~L~~sL~~~L~~~p~LaGrl~~----g~~~i~~~   86 (426)
                      ..+.|+.+      +.+.|+++|...+.+-..+||.+..    ++++|+..
T Consensus         4 m~i~f~gd------dlea~ekalkemirqarkfagtvtytl~gn~l~i~it   48 (170)
T 4hhu_A            4 MVIVFEGD------DLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVIT   48 (170)
T ss_dssp             EEEEEECS------CHHHHHHHHHHHHHHHHHTTCEEEEEEETTEEEEEEE
T ss_pred             EEEEEecC------cHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEe
Confidence            34667755      5889999999999999999999864    35666654


No 26 
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=38.88  E-value=31  Score=26.65  Aligned_cols=42  Identities=17%  Similarity=0.466  Sum_probs=32.0

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhhhcccccccccC----CCeEEEeC
Q 048249           39 SIILLYSNAGESTAKTSDHLKKSLSNTLTHYYPLAGQLKY----DQLIVDCN   86 (426)
Q Consensus        39 ~~~~~f~~~~~~~~~~~~~L~~sL~~~L~~~p~LaGrl~~----g~~~i~~~   86 (426)
                      -..+.|+.+      +.+.|+++|...+.+-..+||.+..    ++++|+..
T Consensus        84 vm~i~f~gd------dlea~ekalkemirqarkfagtvtytl~gn~l~i~it  129 (170)
T 4hhu_A           84 VMVIVFEGD------DLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVIT  129 (170)
T ss_dssp             EEEEEEECS------CHHHHHHHHHHHHHHHHHTTCEEEEEECSSEEEEEEE
T ss_pred             EEEEEEecC------cHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEe
Confidence            345667655      5889999999999999999999854    35666554


No 27 
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=35.85  E-value=7.7  Score=37.90  Aligned_cols=30  Identities=27%  Similarity=0.432  Sum_probs=0.0

Q ss_pred             EEEeeceeeeccccccHHHHHHHHHHHhcC
Q 048249          144 MAIGLCFRHKVIDATTAAFFVKNWGVIARG  173 (426)
Q Consensus       144 ~~l~~~~~H~v~Dg~~~~~fl~~wa~~~rg  173 (426)
                      +-|++++||.+.||.-..+|++.+.+.+..
T Consensus       391 m~lsls~DHRviDG~~aa~Fl~~lk~~Le~  420 (428)
T 3dva_I          391 LALSLSFDHRMIDGATAQKALNHIKRLLSD  420 (428)
T ss_dssp             ------------------------------
T ss_pred             EEEEEEecccccchHHHHHHHHHHHHHHhC
Confidence            459999999999999999999999987654


No 28 
>2xl1_A Arginine attenuator peptide; translation, antibiotic, ribosome, cytomegalovirus; NMR {Neurospora crassa}
Probab=34.86  E-value=22  Score=18.83  Aligned_cols=18  Identities=22%  Similarity=0.049  Sum_probs=14.7

Q ss_pred             CCchhhHHHHHHHHHHHH
Q 048249          234 RPTRFEVVSAVILGALIT  251 (426)
Q Consensus       234 ~~St~d~l~A~lW~~~~~  251 (426)
                      -+++.|-|+-++|+++..
T Consensus         7 vftsqdylsdhlwralna   24 (26)
T 2xl1_A            7 VFTSQDYLSDHLWRALNA   24 (26)
T ss_pred             eeecHHHHHHHHHHHHhc
Confidence            367789999999998763


No 29 
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=32.26  E-value=87  Score=21.28  Aligned_cols=33  Identities=18%  Similarity=0.387  Sum_probs=27.1

Q ss_pred             hHHHHHHHHHHHhhhcccccccccC----CCeEEEeC
Q 048249           54 TSDHLKKSLSNTLTHYYPLAGQLKY----DQLIVDCN   86 (426)
Q Consensus        54 ~~~~L~~sL~~~L~~~p~LaGrl~~----g~~~i~~~   86 (426)
                      +.+.++++|...+.+-..+||.+..    +.++|+..
T Consensus        11 dleafekalkemirqarkfagtvtytldgndleirit   47 (85)
T 2kl8_A           11 DLEAFEKALKEMIRQARKFAGTVTYTLDGNDLEIRIT   47 (85)
T ss_dssp             SHHHHHHHHHHHHHHHTTTTCEEEEEECSSCEEEEEE
T ss_pred             cHHHHHHHHHHHHHHHHhhcceEEEEecCCeeEEEEe
Confidence            5889999999999999999999864    35677665


Done!