BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048251
         (84 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FRN|A Chain A, Crystal Structure Of Flagellar Protein Flga From
          Thermotoga Maritima Msb8
          Length = 278

 Score = 29.6 bits (65), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 3/39 (7%)

Query: 17 KYPFNGPQSAKMTPEGYVADYLNQSLFQDLLSQAE-KEF 54
          +Y F GP++ ++T EGY +  L  ++F+++  +AE K+F
Sbjct: 56 EYDFTGPENVRITVEGYSS--LKNAVFEEIGKKAEAKDF 92


>pdb|3LN7|A Chain A, Crystal Structure Of A Bifunctional Glutathione Synthetase
           From Pasteurella Multocida
 pdb|3LN7|B Chain B, Crystal Structure Of A Bifunctional Glutathione Synthetase
           From Pasteurella Multocida
          Length = 757

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 4/38 (10%)

Query: 9   VHAKKILQKYPFNGPQSAKMTP-EGYVADYLNQSLFQD 45
           V  KK+LQK  FN PQS + T  E  VA Y   +LF++
Sbjct: 491 VVTKKVLQKAGFNVPQSVEFTSLEKAVASY---ALFEN 525


>pdb|2PYG|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
           A-Module
 pdb|2PYG|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
           A-Module
 pdb|2PYH|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
           A-Module Complexed With Mannuronan Trisaccharide
 pdb|2PYH|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
           A-Module Complexed With Mannuronan Trisaccharide
          Length = 377

 Score = 27.7 bits (60), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 19/27 (70%)

Query: 31  EGYVADYLNQSLFQDLLSQAEKEFGFD 57
           +G+VADYL  S+F++ ++ A    GF+
Sbjct: 173 DGFVADYLVDSVFENNVAYANDRHGFN 199


>pdb|1SQY|A Chain A, Structure Of Human Diferric Lactoferrin At 2.5a Resolution
           Using Crystals Grown At Ph 6.5
          Length = 691

 Score = 26.9 bits (58), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 26  AKMTPEGYVADYLN--QSLFQDLLSQAEKEFGFDDHPAGGLLRIPCGE 71
           A++     VA  +N  +    +LL QA+++FG D  PA  L   P G+
Sbjct: 248 ARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPAFQLFGSPSGQ 295


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.141    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,716,591
Number of Sequences: 62578
Number of extensions: 95374
Number of successful extensions: 240
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 236
Number of HSP's gapped (non-prelim): 5
length of query: 84
length of database: 14,973,337
effective HSP length: 52
effective length of query: 32
effective length of database: 11,719,281
effective search space: 375016992
effective search space used: 375016992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)