Query 048251
Match_columns 84
No_of_seqs 119 out of 732
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 07:47:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048251.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048251hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03220 uncharacterized prote 100.0 1.3E-29 2.7E-34 172.2 7.9 78 1-80 1-102 (105)
2 PLN03090 auxin-responsive fami 100.0 1.6E-29 3.4E-34 171.4 7.0 78 1-81 1-103 (104)
3 PLN03219 uncharacterized prote 99.9 3.6E-27 7.7E-32 160.9 6.5 78 1-80 1-104 (108)
4 PF02519 Auxin_inducible: Auxi 99.9 1.4E-25 3.1E-30 149.9 7.1 79 1-82 1-100 (100)
5 PRK02899 adaptor protein; Prov 86.2 0.62 1.3E-05 34.2 2.4 25 40-67 38-62 (197)
6 PRK02315 adaptor protein; Prov 79.5 1.4 3E-05 33.0 2.0 25 40-67 38-62 (233)
7 PF05419 GUN4: GUN4-like ; In 76.2 1 2.3E-05 31.4 0.5 18 27-44 109-132 (132)
8 PF05389 MecA: Negative regula 75.7 0.88 1.9E-05 33.2 0.0 25 40-67 38-62 (220)
9 PF11834 DUF3354: Domain of un 50.0 15 0.00032 23.1 2.0 16 42-57 27-42 (69)
10 PF02209 VHP: Villin headpiece 47.5 10 0.00022 21.2 0.9 19 37-55 1-19 (36)
11 PF02100 ODC_AZ: Ornithine dec 43.2 19 0.00041 24.1 1.8 46 29-79 30-75 (108)
12 smart00153 VHP Villin headpiec 42.1 15 0.00031 20.5 1.0 19 37-55 1-19 (36)
13 PF12058 DUF3539: Protein of u 38.2 6.9 0.00015 26.2 -0.9 11 36-46 4-14 (88)
14 PF09781 NDUF_B5: NADH:ubiquin 36.5 25 0.00055 26.3 1.8 24 24-47 94-120 (187)
15 PF07425 Pardaxin: Pardaxin; 33.2 13 0.00027 20.6 -0.2 19 36-54 8-26 (33)
16 PF08861 DUF1828: Domain of un 30.2 1.4E+02 0.0031 18.6 4.3 39 40-80 44-82 (90)
17 COG3769 Predicted hydrolase (H 26.2 50 0.0011 26.0 1.9 30 28-57 76-120 (274)
18 KOG1748 Acyl carrier protein/N 26.0 44 0.00095 23.7 1.5 49 28-81 73-127 (131)
19 PF12518 DUF3721: Protein of u 25.3 50 0.0011 18.4 1.3 23 48-71 8-31 (34)
20 PF02214 BTB_2: BTB/POZ domain 24.2 1E+02 0.0022 18.8 2.8 23 60-83 40-62 (94)
21 cd04677 Nudix_Hydrolase_18 Mem 24.2 80 0.0017 19.8 2.4 29 27-57 32-60 (132)
22 cd02883 Nudix_Hydrolase Nudix 23.8 93 0.002 18.4 2.5 29 27-57 27-55 (123)
23 cd03673 Ap6A_hydrolase Diadeno 22.8 1E+02 0.0022 19.1 2.6 29 27-57 29-57 (131)
24 PF14714 KH_dom-like: KH-domai 22.1 1.7E+02 0.0036 18.4 3.5 28 36-67 50-77 (80)
25 KOG1785 Tyrosine kinase negati 21.5 61 0.0013 27.6 1.7 17 38-54 311-327 (563)
26 PF14974 DUF4511: Domain of un 21.1 1.8E+02 0.004 19.8 3.7 35 41-83 47-81 (105)
27 COG4862 MecA Negative regulato 20.7 60 0.0013 25.0 1.4 26 39-67 37-62 (224)
28 PF00126 HTH_1: Bacterial regu 20.6 1.2E+02 0.0027 17.3 2.5 21 36-56 23-43 (60)
29 PF04304 DUF454: Protein of un 20.4 72 0.0016 19.0 1.5 21 37-57 5-25 (71)
30 cd03397 PAP2_acid_phosphatase 20.4 73 0.0016 23.5 1.8 19 36-54 213-231 (232)
31 TIGR00128 fabD malonyl CoA-acy 20.1 86 0.0019 22.6 2.1 20 38-57 23-42 (290)
32 COG5646 Uncharacterized conser 20.0 1.1E+02 0.0024 21.6 2.5 36 42-79 69-108 (126)
No 1
>PLN03220 uncharacterized protein; Provisional
Probab=99.96 E-value=1.3e-29 Score=172.22 Aligned_cols=78 Identities=46% Similarity=0.835 Sum_probs=68.5
Q ss_pred CCccchhhHHH-HHHhhhcCCCC-----CCCCCCCCcccee------------------cccCchHHHHHHHhHHHHhCC
Q 048251 1 MGFRLPGIVHA-KKILQKYPFNG-----PQSAKMTPEGYVA------------------DYLNQSLFQDLLSQAEKEFGF 56 (84)
Q Consensus 1 m~~~~~~~~~~-k~~~~~~~~~s-----~~~~~~vPkG~~a------------------~~L~hP~F~~LL~~AEEEfGf 56 (84)
||++++.|.++ ||+++|++... .+.+.+||||||| +|||||+|++||++|||||||
T Consensus 1 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf 80 (105)
T PLN03220 1 MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGF 80 (105)
T ss_pred CCcchhhhHHHHHHHHHHHhhcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCC
Confidence 99999999987 99999776211 1455689999999 799999999999999999999
Q ss_pred CCCCCCceeeecCCHHHHHHHHHH
Q 048251 57 DDHPAGGLLRIPCGEDVFTELISR 80 (84)
Q Consensus 57 ~~h~~G~Ll~IPCd~~~F~~vl~~ 80 (84)
+ |++|+| +||||++.|++++..
T Consensus 81 ~-~~~G~L-~IPCd~~~F~~ll~s 102 (105)
T PLN03220 81 N-HPMGGL-TIPCREEVFLDLIAS 102 (105)
T ss_pred C-CCCCCE-EeeCCHHHHHHHHHh
Confidence 9 767999 999999999999863
No 2
>PLN03090 auxin-responsive family protein; Provisional
Probab=99.96 E-value=1.6e-29 Score=171.36 Aligned_cols=78 Identities=40% Similarity=0.632 Sum_probs=68.4
Q ss_pred CCccchh----hHHHHHHhhhcCCCCCC-------CCCCCCcccee--------------cccCchHHHHHHHhHHHHhC
Q 048251 1 MGFRLPG----IVHAKKILQKYPFNGPQ-------SAKMTPEGYVA--------------DYLNQSLFQDLLSQAEKEFG 55 (84)
Q Consensus 1 m~~~~~~----~~~~k~~~~~~~~~s~~-------~~~~vPkG~~a--------------~~L~hP~F~~LL~~AEEEfG 55 (84)
||++..+ ++++||+|+||++.+.. .+.+||||||| +|||||+|++||++||||||
T Consensus 1 m~~~k~~ki~~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG 80 (104)
T PLN03090 1 MAIKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFG 80 (104)
T ss_pred CCcccccchhHHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhC
Confidence 6776443 78999999999976521 35689999999 99999999999999999999
Q ss_pred CCCCCCCceeeecCCHHHHHHHHHHh
Q 048251 56 FDDHPAGGLLRIPCGEDVFTELISRL 81 (84)
Q Consensus 56 f~~h~~G~Ll~IPCd~~~F~~vl~~i 81 (84)
|+ |+ |+| +||||++.|++++|+|
T Consensus 81 f~-~~-G~L-~IPC~~~~Fe~ll~~i 103 (104)
T PLN03090 81 FD-HD-MGL-TIPCEEVVFRSLTSMI 103 (104)
T ss_pred CC-CC-CcE-EEeCCHHHHHHHHHHh
Confidence 99 65 899 9999999999999998
No 3
>PLN03219 uncharacterized protein; Provisional
Probab=99.94 E-value=3.6e-27 Score=160.90 Aligned_cols=78 Identities=41% Similarity=0.793 Sum_probs=66.5
Q ss_pred CCccchhhHHHHHHhhhcCCC------CC----CCCCCCCcccee----------------cccCchHHHHHHHhHHHHh
Q 048251 1 MGFRLPGIVHAKKILQKYPFN------GP----QSAKMTPEGYVA----------------DYLNQSLFQDLLSQAEKEF 54 (84)
Q Consensus 1 m~~~~~~~~~~k~~~~~~~~~------s~----~~~~~vPkG~~a----------------~~L~hP~F~~LL~~AEEEf 54 (84)
||+..+.+.+||||+|..+.. ++ ..+.+||||||| +|||||+|++||++|||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEf 80 (108)
T PLN03219 1 MGLMRSMLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEEC 80 (108)
T ss_pred CchHHHHHhhHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHh
Confidence 888899999999999733211 11 234679999999 8999999999999999999
Q ss_pred CCCCCCCCceeeecCCHHHHHHHHHH
Q 048251 55 GFDDHPAGGLLRIPCGEDVFTELISR 80 (84)
Q Consensus 55 Gf~~h~~G~Ll~IPCd~~~F~~vl~~ 80 (84)
||+ |++|+| +||||++.|+++++.
T Consensus 81 Gf~-~~~G~L-~IPCd~~~F~~ll~~ 104 (108)
T PLN03219 81 GFH-HSMGGL-TIPCREESFLHLITS 104 (108)
T ss_pred CCC-CCCCCE-EEeCCHHHHHHHHHh
Confidence 999 767999 999999999999975
No 4
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=99.92 E-value=1.4e-25 Score=149.87 Aligned_cols=79 Identities=43% Similarity=0.662 Sum_probs=64.8
Q ss_pred CCccchhhHHHHHHhhhcCCCCC-------CCCCCCCcccee--------------cccCchHHHHHHHhHHHHhCCCCC
Q 048251 1 MGFRLPGIVHAKKILQKYPFNGP-------QSAKMTPEGYVA--------------DYLNQSLFQDLLSQAEKEFGFDDH 59 (84)
Q Consensus 1 m~~~~~~~~~~k~~~~~~~~~s~-------~~~~~vPkG~~a--------------~~L~hP~F~~LL~~AEEEfGf~~h 59 (84)
|..++..+.++|+...++.+.+. +...+||+|||| +|||||+|++||++|||||||+ |
T Consensus 1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~-~ 79 (100)
T PF02519_consen 1 MASRLKSLASAKKWQSRARSKSSSSSSSRSSSESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFD-Q 79 (100)
T ss_pred CccHHHHHHHHHhhhhhhhhcccccccccccccCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcC-C
Confidence 56667777777777665443220 123789999999 9999999999999999999999 6
Q ss_pred CCCceeeecCCHHHHHHHHHHhc
Q 048251 60 PAGGLLRIPCGEDVFTELISRLN 82 (84)
Q Consensus 60 ~~G~Ll~IPCd~~~F~~vl~~i~ 82 (84)
.|+| +||||++.|++++|+|+
T Consensus 80 -~G~l-~iPC~~~~Fe~~l~~le 100 (100)
T PF02519_consen 80 -DGPL-TIPCDVVLFEHLLWLLE 100 (100)
T ss_pred -CCcE-EeeCCHHHHHHHHHHhC
Confidence 5999 99999999999999985
No 5
>PRK02899 adaptor protein; Provisional
Probab=86.23 E-value=0.62 Score=34.20 Aligned_cols=25 Identities=36% Similarity=0.864 Sum_probs=21.2
Q ss_pred chHHHHHHHhHHHHhCCCCCCCCceeee
Q 048251 40 QSLFQDLLSQAEKEFGFDDHPAGGLLRI 67 (84)
Q Consensus 40 hP~F~~LL~~AEEEfGf~~h~~G~Ll~I 67 (84)
+-+|.++|++|..|+||. ..||| +|
T Consensus 38 e~lF~~mm~Ea~~e~~F~--~~~pl-~~ 62 (197)
T PRK02899 38 HQLFRDMMQEANKELGFE--ADGPI-AV 62 (197)
T ss_pred HHHHHHHHHHhhhccCcc--cCCeE-EE
Confidence 457889999999999998 35998 76
No 6
>PRK02315 adaptor protein; Provisional
Probab=79.50 E-value=1.4 Score=32.99 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=21.6
Q ss_pred chHHHHHHHhHHHHhCCCCCCCCceeee
Q 048251 40 QSLFQDLLSQAEKEFGFDDHPAGGLLRI 67 (84)
Q Consensus 40 hP~F~~LL~~AEEEfGf~~h~~G~Ll~I 67 (84)
+-+|..+|++|..|+||. ..||| +|
T Consensus 38 e~fF~~mm~Ea~~e~~F~--~~~pl-~~ 62 (233)
T PRK02315 38 EEFFYSMMDEVDEEDDFA--DEGPL-WF 62 (233)
T ss_pred HHHHHHHHHHhccccCcc--cCCeE-EE
Confidence 458999999999999999 36998 76
No 7
>PF05419 GUN4: GUN4-like ; InterPro: IPR008629 In Arabidopsis, GUN4 is required for the functioning of the plastid mediated repression of nuclear transcription that is involved in controlling the levels of magnesium- protoporphyrin IX. GUN4 binds the product and substrate of Mg-chelatase, an enzyme that produces Mg-Proto, and activates Mg-chelatase. GUN4 is thought to participate in plastid-to-nucleus signalling by regulating magnesium-protoporphyrin IX synthesis or trafficking.; PDB: 1Y6I_A 1Z3X_A 1Z3Y_A.
Probab=76.21 E-value=1 Score=31.36 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=12.1
Q ss_pred CCCCcccee------cccCchHHH
Q 048251 27 KMTPEGYVA------DYLNQSLFQ 44 (84)
Q Consensus 27 ~~vPkG~~a------~~L~hP~F~ 44 (84)
..+|+||+| .+++||.++
T Consensus 109 l~AP~GHLP~~~~~~~~~~~~~~~ 132 (132)
T PF05419_consen 109 LNAPKGHLPAVWWLSSLLSHPAWQ 132 (132)
T ss_dssp TTS-TT--S-THHHHHHHTSCHHH
T ss_pred CCCCCCCCccHHHHHHHHcCCCcC
Confidence 359999999 888998874
No 8
>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.
Probab=75.74 E-value=0.88 Score=33.16 Aligned_cols=25 Identities=32% Similarity=0.736 Sum_probs=0.0
Q ss_pred chHHHHHHHhHHHHhCCCCCCCCceeee
Q 048251 40 QSLFQDLLSQAEKEFGFDDHPAGGLLRI 67 (84)
Q Consensus 40 hP~F~~LL~~AEEEfGf~~h~~G~Ll~I 67 (84)
+-+|..+|++|.+|+||. - .||| ++
T Consensus 38 e~fF~~ileea~~e~~F~-~-~~~l-~~ 62 (220)
T PF05389_consen 38 EEFFYSILEEADEEHGFE-N-DGPL-TF 62 (220)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHhccccCcc-c-CCeE-EE
Confidence 568999999999999999 3 6888 64
No 9
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=50.00 E-value=15 Score=23.09 Aligned_cols=16 Identities=38% Similarity=0.762 Sum_probs=15.0
Q ss_pred HHHHHHHhHHHHhCCC
Q 048251 42 LFQDLLSQAEKEFGFD 57 (84)
Q Consensus 42 ~F~~LL~~AEEEfGf~ 57 (84)
.+++||+.|++.||+.
T Consensus 27 SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 27 SLEELLKIASEKFGFS 42 (69)
T ss_pred cHHHHHHHHHHHhCCC
Confidence 7899999999999986
No 10
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=47.48 E-value=10 Score=21.24 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=15.2
Q ss_pred ccCchHHHHHHHhHHHHhC
Q 048251 37 YLNQSLFQDLLSQAEKEFG 55 (84)
Q Consensus 37 ~L~hP~F~~LL~~AEEEfG 55 (84)
||+.-.|.+++.++.+||-
T Consensus 1 YLsd~dF~~vFgm~~~eF~ 19 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEFY 19 (36)
T ss_dssp GS-HHHHHHHHSS-HHHHH
T ss_pred CcCHHHHHHHHCCCHHHHH
Confidence 7888999999999999984
No 11
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=43.22 E-value=19 Score=24.10 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=21.1
Q ss_pred CCccceecccCchHHHHHHHhHHHHhCCCCCCCCceeeecCCHHHHHHHHH
Q 048251 29 TPEGYVADYLNQSLFQDLLSQAEKEFGFDDHPAGGLLRIPCGEDVFTELIS 79 (84)
Q Consensus 29 vPkG~~a~~L~hP~F~~LL~~AEEEfGf~~h~~G~Ll~IPCd~~~F~~vl~ 79 (84)
+|.+.. .--.-..|.+||+.|||.+|.+ | .++.++=+......++.
T Consensus 30 ip~~~~-~~~~K~~lvaLLElAee~L~c~-~---vvic~~k~~~d~~~Llr 75 (108)
T PF02100_consen 30 IPSSAL-GQGSKESLVALLELAEEKLGCS-H---VVICLDKNRPDRASLLR 75 (108)
T ss_dssp -SS----SS--SHHHHHHHHHHHHHH--------EEEEE---SS-HHHHHH
T ss_pred ECCccc-ccccHHHHHHHHHHhcCcCCCC-E---EEEEEECCchhHHHhhh
Confidence 455444 3335568999999999999987 3 23255544444444444
No 12
>smart00153 VHP Villin headpiece domain.
Probab=42.12 E-value=15 Score=20.48 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=16.7
Q ss_pred ccCchHHHHHHHhHHHHhC
Q 048251 37 YLNQSLFQDLLSQAEKEFG 55 (84)
Q Consensus 37 ~L~hP~F~~LL~~AEEEfG 55 (84)
||+.-.|+..+.++.+||-
T Consensus 1 yLsdeeF~~vfgmsr~eF~ 19 (36)
T smart00153 1 YLSDEDFEEVFGMTREEFY 19 (36)
T ss_pred CCCHHHHHHHHCCCHHHHH
Confidence 7888899999999999984
No 13
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=38.22 E-value=6.9 Score=26.17 Aligned_cols=11 Identities=45% Similarity=0.664 Sum_probs=7.6
Q ss_pred cccCchHHHHH
Q 048251 36 DYLNQSLFQDL 46 (84)
Q Consensus 36 ~~L~hP~F~~L 46 (84)
.|||||.|.-|
T Consensus 4 ~YLNHPtFGlL 14 (88)
T PF12058_consen 4 TYLNHPTFGLL 14 (88)
T ss_dssp -EEEETTTEEE
T ss_pred ccccCCccchh
Confidence 58999988543
No 14
>PF09781 NDUF_B5: NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunit; InterPro: IPR019173 Members of this family mediate the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone, the reaction that occurs being: NADH + ubiquinone = NAD(+) + ubiquinol [, ].
Probab=36.54 E-value=25 Score=26.31 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=19.3
Q ss_pred CCCCCCCcccee---cccCchHHHHHH
Q 048251 24 QSAKMTPEGYVA---DYLNQSLFQDLL 47 (84)
Q Consensus 24 ~~~~~vPkG~~a---~~L~hP~F~~LL 47 (84)
..-.++|+||.| +|-+||+=|-+-
T Consensus 94 AeLaeIPEgY~P~hWEY~kHPItR~iA 120 (187)
T PF09781_consen 94 AELAEIPEGYEPEHWEYYKHPITRWIA 120 (187)
T ss_pred eeeccCCCCCCCcceeeccCcHHHHHH
Confidence 344689999999 999999877553
No 15
>PF07425 Pardaxin: Pardaxin; InterPro: IPR009990 This family consists of several Pardaxin proteins. Pardaxin, a 33-amino-acid pore-forming polypeptide toxin isolated from the Red Sea Moses sole Pardachirus marmoratus, has a helix-hinge-helix structure. This is a common structural motif found both in antibacterial peptides that can act selectively on bacterial membranes (e.g., cecropin), and in cytotoxic peptides that can lyse both mammalian and bacterial cells (e.g., melittin). Pardaxin possesses a high antibacterial activity with a significantly reduced haemolytic activity towards human red blood cells compared with melittin []. Pardaxin has also been found to have a shark repellent action [].; GO: 0005576 extracellular region; PDB: 1XC0_A 2KNS_A.
Probab=33.22 E-value=13 Score=20.55 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=14.7
Q ss_pred cccCchHHHHHHHhHHHHh
Q 048251 36 DYLNQSLFQDLLSQAEKEF 54 (84)
Q Consensus 36 ~~L~hP~F~~LL~~AEEEf 54 (84)
..++.|+|..||.......
T Consensus 8 kiissplfktllsavgsal 26 (33)
T PF07425_consen 8 KIISSPLFKTLLSAVGSAL 26 (33)
T ss_dssp HHCCTTTCHHHHHHHHHHC
T ss_pred HHHccHHHHHHHHHHHHHH
Confidence 6788999999998765443
No 16
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=30.21 E-value=1.4e+02 Score=18.64 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=31.7
Q ss_pred chHHHHHHHhHHHHhCCCCCCCCceeeecCCHHHHHHHHHH
Q 048251 40 QSLFQDLLSQAEKEFGFDDHPAGGLLRIPCGEDVFTELISR 80 (84)
Q Consensus 40 hP~F~~LL~~AEEEfGf~~h~~G~Ll~IPCd~~~F~~vl~~ 80 (84)
.+-=+++|+..-..||+. -..|.| .+.++.+.|-..+..
T Consensus 44 s~~R~~~l~~il~~~gv~-~~~~el-~~~~~~~~~~~~~~~ 82 (90)
T PF08861_consen 44 SKKRKKILNSILNGFGVE-LDEGEL-FIKTSEENFPQAKHR 82 (90)
T ss_pred chHHHHHHHHHHHHcCcc-ccCCEE-EEEeCHHHHHHHHHH
Confidence 566778999999999998 466888 999999988765543
No 17
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=26.20 E-value=50 Score=26.05 Aligned_cols=30 Identities=27% Similarity=0.517 Sum_probs=22.5
Q ss_pred CCCcccee-------------cccC--chHHHHHHHhHHHHhCCC
Q 048251 28 MTPEGYVA-------------DYLN--QSLFQDLLSQAEKEFGFD 57 (84)
Q Consensus 28 ~vPkG~~a-------------~~L~--hP~F~~LL~~AEEEfGf~ 57 (84)
-.|||+++ .-|. --.++++|++-||-|||.
T Consensus 76 ~~p~~~~~~~~~~r~~~g~~~~elg~~l~~ire~l~kLee~~g~~ 120 (274)
T COG3769 76 YLPKGWFPFDGKPREISGISHIELGKVLEKIREKLDKLEEHFGFT 120 (274)
T ss_pred EecccccccCCCCceecceEeeehhhhHHHHHHHHHHHHHHhCee
Confidence 36999999 1122 235899999999999985
No 18
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.02 E-value=44 Score=23.72 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=30.4
Q ss_pred CCCcccee-----cccCchHHHHHHHhHHHHhCCCCCCCC-ceeeecCCHHHHHHHHHHh
Q 048251 28 MTPEGYVA-----DYLNQSLFQDLLSQAEKEFGFDDHPAG-GLLRIPCGEDVFTELISRL 81 (84)
Q Consensus 28 ~vPkG~~a-----~~L~hP~F~~LL~~AEEEfGf~~h~~G-~Ll~IPCd~~~F~~vl~~i 81 (84)
..+..+|- +-|.|= ++.=--||||||. =+.+ += .|-|-.+.+++|....
T Consensus 73 ~~~~s~f~~DLGlDSLD~V---EiVMAlEEEFgiE-Ipd~dAd-ki~t~~da~~yI~~~~ 127 (131)
T KOG1748|consen 73 LTTDSDFFKDLGLDSLDTV---EIVMALEEEFGIE-IPDEDAD-KIKTVRDAADYIADKP 127 (131)
T ss_pred cchhhHHHHhcCCcccccc---hhhhhhHHHhCCc-cCcchhh-hhCCHHHHHHHHHhcc
Confidence 45666665 555553 3334458999996 3333 34 6677777888876643
No 19
>PF12518 DUF3721: Protein of unknown function; InterPro: IPR022196 This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length. There is a conserved WMPC sequence motif. There are two completely conserved residues (A and C) that may be functionally important.
Probab=25.29 E-value=50 Score=18.39 Aligned_cols=23 Identities=30% Similarity=0.674 Sum_probs=16.5
Q ss_pred HhHHHHhCCC-CCCCCceeeecCCH
Q 048251 48 SQAEKEFGFD-DHPAGGLLRIPCGE 71 (84)
Q Consensus 48 ~~AEEEfGf~-~h~~G~Ll~IPCd~ 71 (84)
++.+.+||-. .|++|.. ..||+.
T Consensus 8 e~~A~~~GC~G~H~mg~~-WMPC~~ 31 (34)
T PF12518_consen 8 EKRAKELGCKGAHKMGDK-WMPCSN 31 (34)
T ss_pred HHHHHHcCCcchhhccCc-cccCcc
Confidence 4556678862 2678998 999974
No 20
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=24.19 E-value=1e+02 Score=18.84 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=18.9
Q ss_pred CCCceeeecCCHHHHHHHHHHhcc
Q 048251 60 PAGGLLRIPCGEDVFTELISRLNK 83 (84)
Q Consensus 60 ~~G~Ll~IPCd~~~F~~vl~~i~~ 83 (84)
..|.+ -|-+|...|++|+..++.
T Consensus 40 ~~~~~-fiDRdp~~F~~IL~ylr~ 62 (94)
T PF02214_consen 40 DDGEY-FIDRDPELFEYILNYLRT 62 (94)
T ss_dssp TTTEE-EESS-HHHHHHHHHHHHH
T ss_pred ccceE-EeccChhhhhHHHHHHhh
Confidence 35889 999999999999998764
No 21
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=24.15 E-value=80 Score=19.84 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=24.2
Q ss_pred CCCCccceecccCchHHHHHHHhHHHHhCCC
Q 048251 27 KMTPEGYVADYLNQSLFQDLLSQAEKEFGFD 57 (84)
Q Consensus 27 ~~vPkG~~a~~L~hP~F~~LL~~AEEEfGf~ 57 (84)
-..|.|++- -+.....++++...||-|+.
T Consensus 32 w~~PgG~v~--~gEt~~~aa~REl~EE~Gi~ 60 (132)
T cd04677 32 WGLPGGAME--LGESLEETARRELKEETGLE 60 (132)
T ss_pred EECCeeecC--CCCCHHHHHHHHHHHHhCCe
Confidence 468999985 35568899999999999997
No 22
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=23.84 E-value=93 Score=18.40 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=22.1
Q ss_pred CCCCccceecccCchHHHHHHHhHHHHhCCC
Q 048251 27 KMTPEGYVADYLNQSLFQDLLSQAEKEFGFD 57 (84)
Q Consensus 27 ~~vPkG~~a~~L~hP~F~~LL~~AEEEfGf~ 57 (84)
-..|.|++.. +......+++..+||.|+.
T Consensus 27 ~~~p~G~~~~--~e~~~~~a~RE~~EE~Gl~ 55 (123)
T cd02883 27 WELPGGGVEP--GETLEEAAIREVREETGLD 55 (123)
T ss_pred EeCCcccccC--CCCHHHHHHHHHHHhhCcc
Confidence 4678888752 3335689999999999987
No 23
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=22.83 E-value=1e+02 Score=19.13 Aligned_cols=29 Identities=17% Similarity=0.246 Sum_probs=24.2
Q ss_pred CCCCccceecccCchHHHHHHHhHHHHhCCC
Q 048251 27 KMTPEGYVADYLNQSLFQDLLSQAEKEFGFD 57 (84)
Q Consensus 27 ~~vPkG~~a~~L~hP~F~~LL~~AEEEfGf~ 57 (84)
-..|.|++- -+...-++..+...||-|+.
T Consensus 29 w~~PgG~v~--~gEs~~~aa~REl~EEtGl~ 57 (131)
T cd03673 29 WSLPKGKLE--PGETPPEAAVREVEEETGIR 57 (131)
T ss_pred ccCCCCccC--CCCCHHHHHHHHHhhhhCCc
Confidence 468999985 35678889999999999997
No 24
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=22.12 E-value=1.7e+02 Score=18.39 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=17.9
Q ss_pred cccCchHHHHHHHhHHHHhCCCCCCCCceeee
Q 048251 36 DYLNQSLFQDLLSQAEKEFGFDDHPAGGLLRI 67 (84)
Q Consensus 36 ~~L~hP~F~~LL~~AEEEfGf~~h~~G~Ll~I 67 (84)
+++....-+-|.++-.|+|||. +-|| .|
T Consensus 50 ~~~~~sY~ryL~n~lRe~f~f~---G~Pi-~l 77 (80)
T PF14714_consen 50 ELLPESYKRYLENQLREAFGFE---GVPI-RL 77 (80)
T ss_dssp CC--HHHHHHHHHHHHHHH--T---TS---EE
T ss_pred ccCCHHHHHHHHHHHHHHCCCC---ceeE-EE
Confidence 7788888899999999999998 2466 54
No 25
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=21.46 E-value=61 Score=27.63 Aligned_cols=17 Identities=41% Similarity=0.638 Sum_probs=15.0
Q ss_pred cCchHHHHHHHhHHHHh
Q 048251 38 LNQSLFQDLLSQAEKEF 54 (84)
Q Consensus 38 L~hP~F~~LL~~AEEEf 54 (84)
-|.|+||+|++-..|.|
T Consensus 311 ~NKpL~QaL~eG~keGF 327 (563)
T KOG1785|consen 311 QNKPLFQALLEGHKEGF 327 (563)
T ss_pred CCcHHHHHHHhccccce
Confidence 47899999999988877
No 26
>PF14974 DUF4511: Domain of unknown function (DUF4511)
Probab=21.08 E-value=1.8e+02 Score=19.80 Aligned_cols=35 Identities=26% Similarity=0.508 Sum_probs=21.5
Q ss_pred hHHHHHHHhHHHHhCCCCCCCCceeeecCCHHHHHHHHHHhcc
Q 048251 41 SLFQDLLSQAEKEFGFDDHPAGGLLRIPCGEDVFTELISRLNK 83 (84)
Q Consensus 41 P~F~~LL~~AEEEfGf~~h~~G~Ll~IPCd~~~F~~vl~~i~~ 83 (84)
|+..++--.+=..|||.+ +.+|+ ..|.+++..+++
T Consensus 47 Pva~qiq~~VIk~yGF~~-~~eG~-------~~f~~~i~~~e~ 81 (105)
T PF14974_consen 47 PVATQIQMEVIKKYGFPE-SREGV-------MQFAQLIRELEK 81 (105)
T ss_pred HHHHHHHHHHHHHcCCCC-CcchH-------HHHHHHHHHHHc
Confidence 444444455556799984 33444 378888776654
No 27
>COG4862 MecA Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion]
Probab=20.72 E-value=60 Score=25.01 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=22.5
Q ss_pred CchHHHHHHHhHHHHhCCCCCCCCceeee
Q 048251 39 NQSLFQDLLSQAEKEFGFDDHPAGGLLRI 67 (84)
Q Consensus 39 ~hP~F~~LL~~AEEEfGf~~h~~G~Ll~I 67 (84)
.|-+|.++++.+.+|=+|. ..||| +|
T Consensus 37 ~EE~F~~mMdEl~~ee~F~--~~GpL-~i 62 (224)
T COG4862 37 TEELFYEMMDELNLEEDFK--DEGPL-WI 62 (224)
T ss_pred HHHHHHHHHHhcCCccccc--cCCce-EE
Confidence 3678999999999999998 36999 76
No 28
>PF00126 HTH_1: Bacterial regulatory helix-turn-helix protein, lysR family; InterPro: IPR000847 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family, the lysR family, groups together a range of proteins, including ampR, catM, catR, cynR, cysB, gltC, iciA, ilvY, irgB, lysR, metR, mkaC, mleR, nahR, nhaR, nodD, nolR, oxyR, pssR, rbcR, syrM, tcbR, tfdS and trpI [, , , , ]. The majority of these proteins appear to be transcription activators and most are known to negatively regulate their own expression. All possess a potential HTH DNA-binding motif towards their N-termini.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3T1B_D 3SZP_A 1O7L_C 1B9N_A 1B9M_A 3FZJ_J 3FXR_B 3FXQ_A 3FXU_A 2IJL_B ....
Probab=20.64 E-value=1.2e+02 Score=17.30 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=18.5
Q ss_pred cccCchHHHHHHHhHHHHhCC
Q 048251 36 DYLNQSLFQDLLSQAEKEFGF 56 (84)
Q Consensus 36 ~~L~hP~F~~LL~~AEEEfGf 56 (84)
-.++.|.+..-+++-|+++|.
T Consensus 23 l~is~~~vs~~i~~LE~~lg~ 43 (60)
T PF00126_consen 23 LGISQSAVSRQIKQLEEELGV 43 (60)
T ss_dssp CTSSHHHHHHHHHHHHHHHTS
T ss_pred hhccchHHHHHHHHHHHHhCC
Confidence 467889999999999999995
No 29
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=20.44 E-value=72 Score=19.01 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.0
Q ss_pred ccCchHHHHHHHhHHHHhCCC
Q 048251 37 YLNQSLFQDLLSQAEKEFGFD 57 (84)
Q Consensus 37 ~L~hP~F~~LL~~AEEEfGf~ 57 (84)
.+|||.|+..++.-+|.=|.+
T Consensus 5 l~~h~~~g~~I~~w~~~r~i~ 25 (71)
T PF04304_consen 5 LLNHRLFGPYIRNWEEHRGIP 25 (71)
T ss_pred HHcCchhHHHHHHHHHCCCcC
Confidence 479999999999999877765
No 30
>cd03397 PAP2_acid_phosphatase PAP2, bacterial acid phosphatase or class A non-specific acid phosphatases. These enzymes catalyze phosphomonoester hydrolysis, with optimal activity in low pH conditions. They are secreted into the periplasmic space, and their physiological role remains to be determined.
Probab=20.41 E-value=73 Score=23.51 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=17.7
Q ss_pred cccCchHHHHHHHhHHHHh
Q 048251 36 DYLNQSLFQDLLSQAEKEF 54 (84)
Q Consensus 36 ~~L~hP~F~~LL~~AEEEf 54 (84)
.+++.|.|++.+++|..|+
T Consensus 213 ~l~~~~~f~~~~~~A~~El 231 (232)
T cd03397 213 ALLADPAFAADLAAARAEL 231 (232)
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 8889999999999999986
No 31
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=20.13 E-value=86 Score=22.60 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=17.4
Q ss_pred cCchHHHHHHHhHHHHhCCC
Q 048251 38 LNQSLFQDLLSQAEKEFGFD 57 (84)
Q Consensus 38 L~hP~F~~LL~~AEEEfGf~ 57 (84)
-++|.|++.++++.+-.|++
T Consensus 23 ~~~p~~~~~~~~~~~~lg~~ 42 (290)
T TIGR00128 23 EQYPIAKELFDQASEALGYD 42 (290)
T ss_pred HcCHHHHHHHHHHHHHhCcC
Confidence 37899999999999988864
No 32
>COG5646 Uncharacterized conserved protein [Function unknown]
Probab=20.05 E-value=1.1e+02 Score=21.61 Aligned_cols=36 Identities=28% Similarity=0.449 Sum_probs=25.2
Q ss_pred HHHHHHHhHHHHhCCCCCCCCceeeecCC----HHHHHHHHH
Q 048251 42 LFQDLLSQAEKEFGFDDHPAGGLLRIPCG----EDVFTELIS 79 (84)
Q Consensus 42 ~F~~LL~~AEEEfGf~~h~~G~Ll~IPCd----~~~F~~vl~ 79 (84)
.+-.=....--++||+ +..|-| ++|-+ -+.|+.++.
T Consensus 69 ~gI~~fa~~l~~~~yd-~tkg~i-rfp~~~pvd~~ll~~~i~ 108 (126)
T COG5646 69 AGIDAFADELKEAGYD-YTKGTI-RFPWKAPVDYDLLKKMIE 108 (126)
T ss_pred cchHHHHHHHhhhccc-ccceeE-ecCccCcCCHHHHHHHHH
Confidence 4555556666788999 788999 99987 345555543
Done!