BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048253
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 6/130 (4%)
Query: 38 EFPLHAAALLGHVDFEGEI--RRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNP 95
+ PLH AA +GH + + P LA + + LHIA+++ HV+ + ALL+
Sbjct: 81 QTPLHCAARIGHTNMVKLLLENNANPNLA---TTAGHTPLHIAAREGHVETVLALLEKEA 137
Query: 96 AWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALK 155
+ +PLH+AA G++ V EL R +A G T LH+ V HN LD +K
Sbjct: 138 SQACMTKKGFTPLHVAAKYGKVRV-AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK 196
Query: 156 FLLDNMDDPQ 165
LL P
Sbjct: 197 LLLPRGGSPH 206
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
Query: 34 NCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQV 93
N E PLH AA GH + + + K ++ + +Q + LH A++ H + +K LL+
Sbjct: 44 NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTNMVKLLLEN 102
Query: 94 NPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMI-WGETILHLCVKHNQLD 152
N A +PLH+AA +G ++ + L A+ A M G T LH+ K+ ++
Sbjct: 103 NANPNLATTAGHTPLHIAAREGHVETVLALLEKE--ASQACMTKKGFTPLHVAAKYGKVR 160
Query: 153 ALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
+ LL+ P NA G+T +AV
Sbjct: 161 VAELLLERDAHP---NAAGKNGLTPLHVAV 187
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 13/141 (9%)
Query: 40 PLHAAALLGHVDFEGEIRRQKPELAGELDSNQF---SALHIASQKVHVDKIKALLQVNPA 96
PLH AA V E+ R + G ++ + LH+A+Q+ H + + ALL A
Sbjct: 215 PLHIAAKQNQV----EVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV-ALLLSKQA 269
Query: 97 WCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALK 155
G+ G +PLHL A +G + V + L + + AT G T LH+ + + +K
Sbjct: 270 NGNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNIKLVK 328
Query: 156 FLLDNMDDPQFLNAEDDYGMT 176
FLL + D +NA+ G +
Sbjct: 329 FLLQHQAD---VNAKTKLGYS 346
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 1/134 (0%)
Query: 72 FSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAA 131
+ LH+AS H+ +K LLQ + + +PLH+AA G +V + L + +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK-AKV 73
Query: 132 SATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNL 191
+A +T LH + + +K LL+N +P + I V+ L
Sbjct: 74 NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 133
Query: 192 VELVEEYCHSKWGY 205
+ + C +K G+
Sbjct: 134 EKEASQACMTKKGF 147
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 6/116 (5%)
Query: 68 DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRT 126
D++ ++ LH+A+ H++ ++ LL+ N A A DL G +PLHLAA G ++++E L +
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLK-NGADVNASDLTGITPLHLAAATGHLEIVEVLLK- 101
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
+A G T LHL K+ L+ ++ LL + D +NA+D +G T +++
Sbjct: 102 HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 8/112 (7%)
Query: 85 DKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILH 143
D+++ +L N A A D DG +PLHLAA G ++++E L + +A+ + G T LH
Sbjct: 28 DEVR-ILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA-DVNASDLTGITPLH 85
Query: 144 LCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELV 195
L L+ ++ LL + D +NA D+ G T L +A K +VE++
Sbjct: 86 LAAATGHLEIVEVLLKHGAD---VNAYDNDGH--TPLHLAAKYGHLEIVEVL 132
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 40 PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
PLH AA GH++ + + ++ D + LH+A+ H++ ++ LL+ + A
Sbjct: 50 PLHLAASNGHLEIVEVLLKNGADVNAS-DLTGITPLHLAAATGHLEIVEVLLK-HGADVN 107
Query: 100 AGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFL 157
A D DG +PLHLAA G ++++E L + +A +G+T + + + D + L
Sbjct: 108 AYDNDGHTPLHLAAKYGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
Query: 68 DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRT 126
D + ++ LH+A+++ H++ ++ LL+ A A D DG +PLHLAA +G ++++E L +
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
+A G T LHL + L+ ++ LL D +NA+D +G T LA+
Sbjct: 91 GA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAQDKFGKTPFDLAI 142
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
Query: 40 PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
PLH AA GH++ + + ++ + D + ++ LH+A+++ H++ ++ LL+ A
Sbjct: 38 PLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVN 95
Query: 100 AGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFL 157
A D DG +PLHLAA +G ++++E L + +A +G+T L ++ D + L
Sbjct: 96 AKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 90 LLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKH 148
+L N A A D DG +PLHLAA +G ++++E L + +A G T LHL +
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAKDKDGYTPLHLAARE 78
Query: 149 NQLDALKFLLDNMDDPQFLNAEDDYGMTITQLA 181
L+ ++ LL D +NA+D G T LA
Sbjct: 79 GHLEIVEVLLKAGAD---VNAKDKDGYTPLHLA 108
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
Query: 68 DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRT 126
D + ++ LH+A+++ H++ ++ LL+ A A D DG +PLHLAA +G ++++E L +
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
+A G T LHL + L+ ++ LL D +NA+D +G T LA+
Sbjct: 91 GA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAQDKFGKTPFDLAI 142
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
Query: 40 PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
PLH AA GH++ + + ++ + D + ++ LH+A+++ H++ ++ LL+ A
Sbjct: 38 PLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVN 95
Query: 100 AGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFL 157
A D DG +PLHLAA +G ++++E L + +A +G+T L + + D + L
Sbjct: 96 AKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 90 LLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKH 148
+L N A A D DG +PLHLAA +G ++++E L + +A G T LHL +
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAKDKDGYTPLHLAARE 78
Query: 149 NQLDALKFLLDNMDDPQFLNAEDDYGMTITQLA 181
L+ ++ LL D +NA+D G T LA
Sbjct: 79 GHLEIVEVLLKAGAD---VNAKDKDGYTPLHLA 108
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 67/116 (57%), Gaps = 6/116 (5%)
Query: 68 DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRT 126
D++ + LH+A+ H++ ++ LL+ + A A D+ GS PLHLAA+ G ++++E L +
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLK-HGADVNAIDIXGSTPLHLAALIGHLEIVEVLLK- 101
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
+A WG+T LHL L+ ++ LL + D +NA+D +G T +++
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 85 DKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILH 143
D+++ +L N A A D G +PLHLAA G ++++E L + +A I G T LH
Sbjct: 28 DEVR-ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK-HGADVNAIDIXGSTPLH 85
Query: 144 LCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLA 181
L L+ ++ LL + D +NA D +G T LA
Sbjct: 86 LAALIGHLEIVEVLLKHGAD---VNAVDTWGDTPLHLA 120
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 9/90 (10%)
Query: 40 PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQ----VNP 95
PLH AA GH++ + + ++ +D + LH+A+ H++ ++ LL+ VN
Sbjct: 50 PLHLAATYGHLEIVEVLLKHGADV-NAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNA 108
Query: 96 AWCFAGDLDGSPLHLAAMKGRIDVLEELFR 125
+ GD +PLHLAA+ G ++++E L +
Sbjct: 109 VDTW-GD---TPLHLAAIMGHLEIVEVLLK 134
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
Query: 68 DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRT 126
D + ++ LH+A+++ H++ ++ LL+ A A D DG +PLHLAA +G ++++E L +
Sbjct: 44 DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 102
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
+A G T LHL + L+ ++ LL D +NA+D +G T +++
Sbjct: 103 GA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAQDKFGKTAFDISI 154
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
Query: 40 PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
PLH AA GH++ + + ++ + D + ++ LH+A+++ H++ ++ LL+ A
Sbjct: 50 PLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVN 107
Query: 100 AGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFL 157
A D DG +PLHLAA +G ++++E L + +A +G+T + + + D + L
Sbjct: 108 AKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 90 LLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKH 148
+L N A A D DG +PLHLAA +G ++++E L + +A G T LHL +
Sbjct: 32 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAKDKDGYTPLHLAARE 90
Query: 149 NQLDALKFLLDNMDDPQFLNAEDDYGMTITQLA 181
L+ ++ LL D +NA+D G T LA
Sbjct: 91 GHLEIVEVLLKAGAD---VNAKDKDGYTPLHLA 120
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 67/116 (57%), Gaps = 6/116 (5%)
Query: 68 DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRT 126
D++ + LH+A+ H++ ++ LL+ + A A D+ GS PLHLAA+ G ++++E L +
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLK-HGADVNAIDIMGSTPLHLAALIGHLEIVEVLLK- 101
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
+A WG+T LHL L+ ++ LL + D +NA+D +G T +++
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Query: 70 NQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRP 128
N + LH+A++ H++ +K LL+ A A D +G +PLHLAA G ++V++ L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 129 LAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLA 181
+A G T LHL ++ L+ +K LL+ D +NA+D G T LA
Sbjct: 60 -DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLA 108
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 40 PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
PLH AA GH++ + ++ + D N + LH+A++ H++ +K LL+ A
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAG-ADVN 62
Query: 100 AGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLL 158
A D +G +PLHLAA G ++V++ L +A G T LHL ++ L+ +K LL
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 159 D 159
+
Sbjct: 122 E 122
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
Query: 68 DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTR 127
D + + LH+A+ K H++ ++ LL+ A + +PLHLAA+ G ++++E L +
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNG 103
Query: 128 PLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
+AT +G T LHL L+ ++ LL D +NA+D +G T +++
Sbjct: 104 A-DVNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 36 LSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQ 92
+ + PLH AAL GH++ E+ + D+ F+ LH+A+ H++ ++ LL+
Sbjct: 79 MGDTPLHLAALYGHLEIV-EVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Query: 68 DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRT 126
D ++ LH+A+ H++ ++ LL+ N A A D G +PLHLAA +G ++++E L +
Sbjct: 44 DFTGWTPLHLAAHFGHLEIVEVLLK-NGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKN 102
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
+A+ G T LHL K L+ ++ LL N D +NA+D +G T +++
Sbjct: 103 GA-DVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISI 154
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 67 LDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFR 125
+D+ + LH+A+ H++ ++ LL+ + A A D+ G +PLHLAAM G ++++E L +
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLLK-HGADVDAADVYGFTPLHLAAMTGHLEIVEVLLK 101
Query: 126 TRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
+A + G T LHL L+ ++ LL D +NA+D +G T +++
Sbjct: 102 YGA-DVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 40 PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
PLH AA+ GH++ + + ++ D F+ LH+A+ H++ ++ LL+ A
Sbjct: 50 PLHLAAVSGHLEIVEVLLKHGADVDAA-DVYGFTPLHLAAMTGHLEIVEVLLKYG-ADVN 107
Query: 100 AGDLDGS-PLHLAAMKGRIDVLEELFR 125
A D+ GS PLHLAA +G ++++E L +
Sbjct: 108 AFDMTGSTPLHLAADEGHLEIVEVLLK 134
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 68 DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRT 126
DS+ + LH+A++ H + +K LL A A D DG +PLHLAA G +V++ L +
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQG-ADPNAKDSDGKTPLHLAAENGHKEVVK-LLLS 91
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLA 181
+ +A G+T LHL ++ + +K LL DP N D G T LA
Sbjct: 92 QGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP---NTSDSDGRTPLDLA 143
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 78 ASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMI 136
A++ + D++K LL+ N A A D DG +PLHLAA G +V++ L ++ +A
Sbjct: 11 AAENGNKDRVKDLLE-NGADVNASDSDGKTPLHLAAENGHKEVVK-LLLSQGADPNAKDS 68
Query: 137 WGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
G+T LHL ++ + +K LL DP NA+D G T LA
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADP---NAKDSDGKTPLHLAA 111
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 68 DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRT 126
D+ + LH+A++ H++ ++ LL+ N A A D GS PLHLAA +G ++++E L +
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLLK-NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
+A G T LHL L+ ++ LL D +NA+D +G T +++
Sbjct: 103 GA-DVNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Query: 34 NCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQV 93
+ + PLH AA +GH++ E+ + LD + + LH+A+++ H++ ++ LL+
Sbjct: 44 DTYGDTPLHLAARVGHLEIV-EVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 94 NPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLD 152
A A D GS PLHLAA G ++++E L + +A +G+T + + + D
Sbjct: 103 G-ADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISIDNGNED 160
Query: 153 ALKFL 157
+ L
Sbjct: 161 LAEIL 165
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 85 DKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILH 143
D+++ +L N A A D G +PLHLAA G ++++E L + +A G T LH
Sbjct: 28 DEVR-ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA-DVNALDFSGSTPLH 85
Query: 144 LCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLA 181
L K L+ ++ LL D +NA+D G T LA
Sbjct: 86 LAAKRGHLEIVEVLLKYGAD---VNADDTIGSTPLHLA 120
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 85 DKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILH 143
D+++ +L N A A D G +PLHLAA +G ++++E L + +A+ IWG T LH
Sbjct: 28 DEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNASDIWGRTPLH 85
Query: 144 LCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
L L+ ++ LL+ D +NA+D +G T +++
Sbjct: 86 LAATVGHLEIVEVLLEYGAD---VNAQDKFGKTAFDISI 121
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 67 LDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFR 125
+D + LH+A+++ H++ ++ LL+ + A A D+ G +PLHLAA G ++++E L
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNASDIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 126 TRPLAASATMIWGETILHLCVKHNQLDALKFL 157
+A +G+T + + + D + L
Sbjct: 102 YGA-DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 4/119 (3%)
Query: 40 PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
PLH AA GH++ + + ++ + DS + LH+A+ + H++ ++ LL+ N A
Sbjct: 50 PLHLAAYFGHLEIVEVLLKNGADVNAD-DSLGVTPLHLAADRGHLEVVEVLLK-NGADVN 107
Query: 100 AGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFL 157
A D +G +PLHLAA G ++++E L + +A +G+T + + + D + L
Sbjct: 108 ANDHNGFTPLHLAANIGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 75 LHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASA 133
LH+A+ H++ ++ LL+ N A A D G +PLHLAA +G ++V+E L + +A
Sbjct: 51 LHLAAYFGHLEIVEVLLK-NGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGA-DVNA 108
Query: 134 TMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
G T LHL L+ ++ LL + D +NA+D +G T +++
Sbjct: 109 NDHNGFTPLHLAANIGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Query: 68 DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRT 126
D++ ++ LH+A+ H++ ++ LL+ N A A D G +PL LAA+ G ++++E L +
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
+A + G T LHL L+ ++ LL N D +NA+D +G T +++
Sbjct: 103 GA-DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISI 154
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 40 PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
PLH AA GH++ E+ + +D + L +A+ H++ ++ LL+ N A
Sbjct: 50 PLHLAAFNGHLEIV-EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK-NGADVN 107
Query: 100 AGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFL 157
A D++G +PLHLAAM G ++++E L + +A +G+T + + + D + L
Sbjct: 108 ANDMEGHTPLHLAAMFGHLEIVEVLLKNGA-DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 85 DKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILH 143
D+++ +L N A A D G +PLHLAA G ++++E L + +A G T L
Sbjct: 28 DEVR-ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA-DVNAVDHAGMTPLR 85
Query: 144 LCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLA 181
L L+ ++ LL N D +NA D G T LA
Sbjct: 86 LAALFGHLEIVEVLLKNGAD---VNANDMEGHTPLHLA 120
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 26/148 (17%)
Query: 85 DKIKALLQVNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILH 143
D+++ +L N A A D G+ PLHLAA G ++++E L + A+ ++G T LH
Sbjct: 28 DEVR-ILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLK-HGADVDASDVFGYTPLH 85
Query: 144 LCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKW 203
L L+ ++ LL N D +NA D GMT LA +KW
Sbjct: 86 LAAYWGHLEIVEVLLKNGAD---VNAMDSDGMTPLHLA-------------------AKW 123
Query: 204 GYV-IRFLTTRTMIEVNALNANGFMALD 230
GY+ I + + +VNA + G A D
Sbjct: 124 GYLEIVEVLLKHGADVNAQDKFGKTAFD 151
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 85 DKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILH 143
D+++ +L N A A D G +PLHLAA +G ++++E L + +A IWG T LH
Sbjct: 28 DEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNARDIWGRTPLH 85
Query: 144 LCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
L L+ ++ LL+ D +NA+D +G T +++
Sbjct: 86 LAATVGHLEIVEVLLEYGAD---VNAQDKFGKTAFDISI 121
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 67 LDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFR 125
+D + LH+A+++ H++ ++ LL+ + A A D+ G +PLHLAA G ++++E L
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNARDIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 126 TRPLAASATMIWGETILHLCVKHNQLDALKFL 157
+A +G+T + + + D + L
Sbjct: 102 YGA-DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 85 DKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILH 143
D+++ +L N A A D+ G +PLHLAA G ++++E L + +A G T LH
Sbjct: 28 DEVR-ILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA-DVNAYDTLGSTPLH 85
Query: 144 LCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEY 198
L L+ ++ LL N D +NA+DD G IT L +A +VE++ +Y
Sbjct: 86 LAAHFGHLEIVEVLLKNGAD---VNAKDDNG--ITPLHLAANRGHLEIVEVLLKY 135
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 40 PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
PLH AA GH++ E+ + D+ + LH+A+ H++ ++ LL+ N A
Sbjct: 50 PLHLAAYWGHLEIV-EVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLK-NGADVN 107
Query: 100 AGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFL 157
A D +G +PLHLAA +G ++++E L + +A +G+T + + + D + L
Sbjct: 108 AKDDNGITPLHLAANRGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 34 NCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQ 92
+ L PLH AA GH++ + + ++ + D N + LH+A+ + H++ ++ LL+
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAK-DDNGITPLHLAANRGHLEIVEVLLK 134
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 8/131 (6%)
Query: 68 DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRT 126
DS+ + LH A++ H + +K LL A A D DG +PLH AA G ++++ L +
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSKG-ADPNAKDSDGRTPLHYAAENGHKEIVK-LLLS 91
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKL 186
+ +A G T LH ++ + +K LL DP N D G T L +A +
Sbjct: 92 KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP---NTSDSDGR--TPLDLAREH 146
Query: 187 CFQNLVELVEE 197
+ +V+L+E+
Sbjct: 147 GNEEIVKLLEK 157
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 78 ASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMI 136
A++ + D++K LL+ N A A D DG +PLH AA G ++++ L ++ +A
Sbjct: 11 AAENGNKDRVKDLLE-NGADPNASDSDGRTPLHYAAENGHKEIVK-LLLSKGADPNAKDS 68
Query: 137 WGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELV 195
G T LH ++ + +K LL DP NA+D G T L A + + +V+L+
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKGADP---NAKDSDGR--TPLHYAAENGHKEIVKLL 122
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 4/149 (2%)
Query: 35 CLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVN 94
C+S + A G +D E LA D + +ALH A H + ++ LLQ+
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63
Query: 95 PAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDAL 154
D SPLH+AA GR ++++ L + +A G T LH N+ +
Sbjct: 64 VPVNDKDDAGWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIA 122
Query: 155 KFLLDNMDDPQFLNAEDDYGMTITQLAVA 183
LL+ +P +A+D Y T A A
Sbjct: 123 VMLLEGGANP---DAKDHYDATAMHRAAA 148
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 72 FSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLA 130
+ LH+ H++ I+ LL+ A A D G +PLHLAA +G ++++E L +
Sbjct: 48 ITPLHLVVNNGHLEIIEVLLKY-AADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGA-D 105
Query: 131 ASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
+A G T LHL + L+ ++ LL D +NA+D +G T +++
Sbjct: 106 VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 40 PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
PLH GH++ + + ++ D + ++ LH+A+ + H++ ++ LL+ A
Sbjct: 50 PLHLVVNNGHLEIIEVLLKYAADVNAS-DKSGWTPLHLAAYRGHLEIVEVLLKYG-ADVN 107
Query: 100 AGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFL 157
A D G +PLHLAA G ++++E L + +A +G+T + + + D + L
Sbjct: 108 AMDYQGYTPLHLAAEDGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 85 DKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFR-TRPLAASATMIWGETIL 142
D+++ +L N A A D G +PLHL G ++++E L + + AS W T L
Sbjct: 28 DEVR-ILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGW--TPL 84
Query: 143 HLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLA 181
HL L+ ++ LL D +NA D G T LA
Sbjct: 85 HLAAYRGHLEIVEVLLKYGAD---VNAMDYQGYTPLHLA 120
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 85 DKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILH 143
D+++ +L N A A D G +PLHLAA +G ++++E L + +A+ WG T LH
Sbjct: 28 DEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNASDSWGRTPLH 85
Query: 144 LCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
L L+ ++ LL+ D +NA+D +G T +++
Sbjct: 86 LAATVGHLEIVEVLLEYGAD---VNAQDKFGKTAFDISI 121
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 67 LDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFR 125
+D + LH+A+++ H++ ++ LL+ + A A D G +PLHLAA G ++++E L
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNASDSWGRTPLHLAATVGHLEIVEVLLE 101
Query: 126 TRPLAASATMIWGETILHLCVKHNQLDALKFL 157
+A +G+T + + + D + L
Sbjct: 102 YGA-DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 70 NQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRP 128
N + LH+A++ H++ +K LL+ A A D +G +PLHLAA G ++V++ L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 129 LAASATMIWGETILHLCVKHNQLDALKFLLD 159
+A G T LHL ++ L+ +K LL+
Sbjct: 60 -DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 41.6 bits (96), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 40 PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
PLH AA GH++ + ++ + D N + LH+A++ H++ +K LL+ A
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAG-ADVN 62
Query: 100 AGDLDG-SPLHLAAMKGRIDVLEELF 124
A D +G +PLHLAA G ++V++ L
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 38.1 bits (87), Expect = 0.007, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 106 SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQ 165
+PLHLAA G ++V++ L +A G T LHL ++ L+ +K LL+ D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-- 60
Query: 166 FLNAEDDYGMTITQLA 181
+NA+D G T LA
Sbjct: 61 -VNAKDKNGRTPLHLA 75
Score = 28.9 bits (63), Expect = 3.8, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 40 PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQ 92
PLH AA GH++ + ++ + D N + LH+A++ H++ +K LL+
Sbjct: 38 PLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 28.5 bits (62), Expect = 4.9, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 138 GETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLA 181
G T LHL ++ L+ +K LL+ D +NA+D G T LA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLA 42
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 40 PLHAAALLGHVDFEGEIRRQKPELAGELDS---NQFSALHIASQKVHVDKIKALLQVNPA 96
PLHAAA GHVD I + +D+ +Q + L A++ H++ +K L++ A
Sbjct: 14 PLHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG-A 68
Query: 97 WCFAGDLDGSP-LHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALK 155
D +GS LHLAA KG +V++ L + + G T + ++ +D +K
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 156 FLLDNMDDPQFLNAEDD 172
LL D + E++
Sbjct: 129 LLLSKGSDINIRDNEEN 145
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 70 NQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPL 129
N+ S LH A++ HVD L+Q + +PL AA ++ ++ L + L
Sbjct: 10 NKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL 69
Query: 130 AASATMIWGETILHLCVKHNQLDALKFLLDN--MDDPQFLNAEDDYGMT 176
G T LHL K + +++LL N MD +N +DD G T
Sbjct: 70 VDPKDA-EGSTCLHLAAKKGHYEVVQYLLSNGQMD----VNCQDDGGWT 113
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 63 LAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEE 122
LA D + +ALH A H + ++ LLQ+ D SPLH+AA GR ++++
Sbjct: 33 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKA 92
Query: 123 LFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
L + +A G T LH N+ + LL+ +P +A+D Y T A
Sbjct: 93 LL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP---DAKDHYEATAMHRAA 148
Query: 183 A 183
A
Sbjct: 149 A 149
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 63 LAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEE 122
LA D + +ALH A H + ++ LLQ+ D SPLH+AA GR ++++
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKA 91
Query: 123 LFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
L + +A G T LH N+ + LL+ +P +A+D Y T A
Sbjct: 92 LL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP---DAKDHYEATAMHRAA 147
Query: 183 A 183
A
Sbjct: 148 A 148
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 40 PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
PLH AA +GH++ + R ++ +D+N + LH+A+ H++ ++ LL+ A
Sbjct: 38 PLHMAAAVGHLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVLLKYG-ADVN 95
Query: 100 AGDLDG-SPLHLAAMKGRIDVLEELFR 125
A D G +PL+LAA G ++++E L +
Sbjct: 96 AKDATGITPLYLAAYWGHLEIVEVLLK 122
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 85 DKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILH 143
D+++ +L N A A D G +PLH+AA G ++++E L R +A G T LH
Sbjct: 16 DEVR-ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGA-DVNAVDTNGTTPLH 73
Query: 144 LCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLA 181
L L+ ++ LL D +NA+D G+T LA
Sbjct: 74 LAASLGHLEIVEVLLKYGAD---VNAKDATGITPLYLA 108
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
Query: 85 DKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILH 143
D+++ +L N A A D G +PLHLAAM G ++++E L + +AT G T LH
Sbjct: 28 DEVR-ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA-DVNATGNTGRTPLH 85
Query: 144 LCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEE 197
L + L+ ++ LL + D +NA+D +G T +++ ++L E++++
Sbjct: 86 LAAWADHLEIVEVLLKHGAD---VNAQDKFGK--TAFDISIDNGNEDLAEILQK 134
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 66 ELDSNQF---SALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEE 122
++++N + + LH+A+ H++ ++ LL+ G+ +PLHLAA ++++E
Sbjct: 39 DVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEV 98
Query: 123 LFRTRPLAASATMIWGETILHLCVKHNQLDALKFL 157
L + +A +G+T + + + D + L
Sbjct: 99 LLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 90 LLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKH 148
+L N A A D G +PLHLAAM ++++E L + +A GET LHL +
Sbjct: 32 ILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA-DVNAIDAIGETPLHLVAMY 90
Query: 149 NQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
L+ ++ LL + D +NA+D +G T +++
Sbjct: 91 GHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 121
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 68 DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRT 126
D + LH+A+ H++ ++ LL+ N A A D G +PLHL AM G ++++E L +
Sbjct: 44 DKVGLTPLHLAAMNDHLEIVEVLLK-NGADVNAIDAIGETPLHLVAMYGHLEIVEVLLK- 101
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFL 157
+A +G+T + + + D + L
Sbjct: 102 HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 4/149 (2%)
Query: 35 CLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVN 94
C+S + A G +D E LA D + +ALH A H + ++ LLQ+
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63
Query: 95 PAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDAL 154
D SPLH+AA G ++++ L + +A G T LH N+ +
Sbjct: 64 VPVNDKDDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIA 122
Query: 155 KFLLDNMDDPQFLNAEDDYGMTITQLAVA 183
LL+ +P +A+D Y T A A
Sbjct: 123 VMLLEGGANP---DAKDHYDATAMHRAAA 148
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 36 LSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNP 95
L PLH AA GH++ E+ + D+ + LH+A+ H++ ++ LL+ +
Sbjct: 46 LGHTPLHLAAKTGHLEIV-EVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLK-HG 103
Query: 96 AWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDAL 154
A A D +G +PLHLAA G ++++E L + +A +G+T + + + D
Sbjct: 104 ADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 155 KFL 157
+ L
Sbjct: 163 EIL 165
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 11/113 (9%)
Query: 85 DKIKALLQVNPAWCFAGD-LDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILH 143
D+++ +L N A A D L +PLHLAA G ++++E L + +A +G T LH
Sbjct: 28 DEVR-ILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA-DVNAWDNYGATPLH 85
Query: 144 LCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVE 196
L + L+ ++ LL + D +NA+D G T LA + +E+VE
Sbjct: 86 LAADNGHLEIVEVLLKHGAD---VNAKDYEGFTPLHLA-----AYDGHLEIVE 130
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 40 PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
PLH AA +GH + + + ++ D++ ++ LH+A+ H++ ++ LL+ A
Sbjct: 50 PLHLAAWIGHPEIVEVLLKHGADVNAR-DTDGWTPLHLAADNGHLEIVEVLLKYG-ADVN 107
Query: 100 AGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFL 157
A D G +PLHLAA +G ++++E L + +A +G+T + + + D + L
Sbjct: 108 AQDAYGLTPLHLAADRGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 85 DKIKALLQVNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFR-TRPLAASATMIWGETIL 142
D+++ +L N A A D GS PLHLAA G +++E L + + A T W T L
Sbjct: 28 DEVR-ILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGW--TPL 84
Query: 143 HLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLA 181
HL + L+ ++ LL D +NA+D YG+T LA
Sbjct: 85 HLAADNGHLEIVEVLLKYGAD---VNAQDAYGLTPLHLA 120
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 73 SALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAAS 132
S LH+A+Q H + LL+ + +D +PLH+AA +G +++E L + +
Sbjct: 36 SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA 95
Query: 133 ATMIWGETILHLCVKHNQLDALKFLL 158
M+ T LH +HN + ++ L+
Sbjct: 96 KDML-KMTALHWATEHNHQEVVELLI 120
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 103 LDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMD 162
L SPLHLAA G E L R ++ A T LH+ + ++ LL +
Sbjct: 33 LGTSPLHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGA 91
Query: 163 DPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEY 198
D +NA+D + +T L A + Q +VEL+ +Y
Sbjct: 92 D---VNAKD--MLKMTALHWATEHNHQEVVELLIKY 122
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 67 LDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRT 126
LD + + LH+A+Q H++ ++ LL+ + +PLHLAA++G ++++E L +
Sbjct: 43 LDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLK- 101
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFL 157
+A +G+T + + + D + L
Sbjct: 102 HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 33 VNCLSE---FPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKA 89
VN L E PLH AA LGH++ + + ++ E D+ + LH+A+ + H++ ++
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE-DNFGITPLHLAAIRGHLEIVEV 98
Query: 90 LLQ 92
LL+
Sbjct: 99 LLK 101
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 40 PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
PLH AA G ++ + + ++ DS + LH+A+ H++ ++ LL+ + A
Sbjct: 42 PLHLAAANGQLEIVEVLLKNGADVNAS-DSAGITPLHLAAYDGHLEIVEVLLK-HGADVN 99
Query: 100 AGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFL 157
A D G +PLHLAA+ G+++++E L + +A G T + + Q D + L
Sbjct: 100 AYDRAGWTPLHLAALSGQLEIVEVLLK-HGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 25/156 (16%)
Query: 85 DKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILH 143
D+++ +L N A A D +G +PLHLAA G+++++E L + +A+ G T LH
Sbjct: 20 DEVR-ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA-DVNASDSAGITPLH 77
Query: 144 LCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKW 203
L L+ ++ LL + D +NA D G T LA +E+VE
Sbjct: 78 LAAYDGHLEIVEVLLKHGAD---VNAYDRAGWTPLHLA-----ALSGQLEIVE------- 122
Query: 204 GYVIRFLTTRTMIEVNALNANGFMALD-TLAQSKRD 238
+ + +VNA +A G A D ++ Q + D
Sbjct: 123 ------VLLKHGADVNAQDALGLTAFDISINQGQED 152
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 8/131 (6%)
Query: 36 LSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALH----IASQKVHVDKIKALL 91
+S +PLH A + E+ KP L + D + LH + ++ + +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 92 QVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMI--WGETILHLCVKHN 149
VN + D +P H+A G ++V++ L+ RPL I G T LHL V
Sbjct: 61 NVNLD-DYPDDSGWTPFHIACSVGNLEVVKSLY-DRPLKPDLNKITNQGVTCLHLAVGKK 118
Query: 150 QLDALKFLLDN 160
+ +FL++N
Sbjct: 119 WFEVSQFLIEN 129
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%)
Query: 107 PLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQF 166
PLH A M+ ++EL ++P G LH V + FLL M++
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 167 LNAEDDYGMTITQLAVAV 184
+ DD G T +A +V
Sbjct: 65 DDYPDDSGWTPFHIACSV 82
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 8/131 (6%)
Query: 36 LSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALH----IASQKVHVDKIKALL 91
+S +PLH A + E+ KP L + D + LH + ++ + +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 92 QVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMI--WGETILHLCVKHN 149
VN + D +P H+A G ++V++ L+ RPL I G T LHL V
Sbjct: 61 NVNLD-DYPDDSGWTPFHIACSVGNLEVVKSLY-DRPLKPDLNKITNQGVTCLHLAVGKK 118
Query: 150 QLDALKFLLDN 160
+ +FL++N
Sbjct: 119 WFEVSQFLIEN 129
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%)
Query: 107 PLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQF 166
PLH A M+ ++EL ++P G LH V + FLL M++
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 167 LNAEDDYGMTITQLAVAV 184
+ DD G T +A +V
Sbjct: 65 DDYPDDSGWTPFHIACSV 82
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 8/131 (6%)
Query: 36 LSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALH----IASQKVHVDKIKALL 91
+S +PLH A + E+ KP L + D + LH + ++ + +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 92 QVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMI--WGETILHLCVKHN 149
VN + D +P H+A G ++V++ L+ RPL I G T LHL V
Sbjct: 61 NVNLD-DYPDDSGWTPFHIACSVGNLEVVKSLY-DRPLKPDLNKITNQGVTCLHLAVGKK 118
Query: 150 QLDALKFLLDN 160
+ +FL++N
Sbjct: 119 WFEVSQFLIEN 129
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%)
Query: 107 PLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQF 166
PLH A M+ ++EL ++P G LH V + FLL M++
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 167 LNAEDDYGMTITQLAVAV 184
+ DD G T +A +V
Sbjct: 65 DDYPDDSGWTPFHIACSV 82
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 68 DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAM-----KGRIDVLE 121
DSN +ALH + + ++ LL + G SP+ L A+ + I+ +
Sbjct: 108 DSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVL 167
Query: 122 ELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
+LFR + A A+ G+T L L V H ++D +K LL D +N +DD G T
Sbjct: 168 QLFRLGNINAKASQ-AGQTALMLAVSHGRVDVVKALLACEAD---VNVQDDDGST 218
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Query: 59 QKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRID 118
Q L + D +ALH+A++ D K LL+ + ++ +PLH A
Sbjct: 46 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 105
Query: 119 VLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
V + L R R A M G T L L + L+ L+++ D +NA DD G +
Sbjct: 106 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD---VNAVDDLGKS 160
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 66 ELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFR 125
E+D+ + L+IA ++ KAL+ + SP A +GR ++L + +
Sbjct: 34 EVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLK 93
Query: 126 TRPLAASATMIWGETILHLCVKHNQLDALKFLL-DNMDDPQFLNAEDDYGMTITQLAVAV 184
+ +G L + +D +K LL D +D F N D+G T AV +
Sbjct: 94 HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQN---DFGYTALIEAVGL 150
Query: 185 K---LCFQNLVELVEE 197
+ +Q++V+L+ E
Sbjct: 151 REGNQLYQDIVKLLME 166
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Query: 59 QKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRID 118
Q L + D +ALH+A++ D K LL+ + ++ +PLH A
Sbjct: 45 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 104
Query: 119 VLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
V + L R R A M G T L L + L+ L+++ D +NA DD G +
Sbjct: 105 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD---VNAVDDLGKS 159
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 59 QKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRID 118
Q L + D +ALH+A++ D K LL+ + ++ +PLH A
Sbjct: 10 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQG 69
Query: 119 VLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQF-LNAEDDYGMT 176
V + L R R A M G T L L + AL+ +L+++ + +NA DD G +
Sbjct: 70 VFQILLRNRATDLDARMHDGTTPLILAARL----ALEGMLEDLINSHADVNAVDDLGKS 124
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 68 DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRT 126
D + + LH+A+ V ++ LLQ + A A D G PLH A G +V E L +
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVTELLLK- 112
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLN 168
+A +W T LH N+++ LL + DP +N
Sbjct: 113 HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN 154
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 106 SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQ 165
+PLH+AA + DV+E L + +A G+T LH L + LL DP
Sbjct: 249 TPLHVAAERAHNDVMEVLHK-HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307
Query: 166 FLNAEDDYGMTITQL 180
++ + G T Q+
Sbjct: 308 IISLQ---GFTAAQM 319
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Query: 59 QKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRID 118
Q L + D +ALH+A++ D K LL+ + ++ +PLH A
Sbjct: 13 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 72
Query: 119 VLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
V + L R R A M G T L L + L+ L+++ D +NA DD G +
Sbjct: 73 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD---VNAVDDLGKS 127
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 68 DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRT 126
D + LH+A+ H++ ++ LL+ + A A D DGS PLHLAA+ G ++++E L +
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLK-HGADVNAHDNDGSTPLHLAALFGHLEIVEVLLK- 101
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFL 157
+A +G+T + + + D + L
Sbjct: 102 HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 90 LLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKH 148
+L N A A D G +PLHLAA ++++E L + +A G T LHL
Sbjct: 32 ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLK-HGADVNAHDNDGSTPLHLAALF 90
Query: 149 NQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
L+ ++ LL + D +NA+D +G T +++
Sbjct: 91 GHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 121
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
Query: 59 QKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRID 118
Q L + D +ALH+A+ D K LL+ + ++ +PLH A
Sbjct: 45 QGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 104
Query: 119 VLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
V + L R R A M G T L L + L+ L+++ D +NA DD G +
Sbjct: 105 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD---VNAVDDLGKS 159
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 50 VDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPL 108
VD++G R+ + G +ALH A+Q + +K L+ + D DG +P+
Sbjct: 264 VDYDGAARKDSEKYKGR------TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPI 317
Query: 109 HLAAMKGRIDVLEELFR 125
LAA +GRI+V+ L +
Sbjct: 318 XLAAQEGRIEVVXYLIQ 334
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 101 GDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD 159
G DG +PLH AA G + +++L ++ +A G T LHL K+ + +K LL
Sbjct: 5 GSKDGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA 63
Query: 160 NMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVE 196
D +NA G T L A K +V+L++
Sbjct: 64 KGAD---VNARSKDGNTPEHL--AKKNGHHEIVKLLD 95
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 56 IRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGS-PLHLAAMK 114
+R P+L D F+ +H A++ +D ++ LL+ N A D +G+ PLHLAA +
Sbjct: 58 LRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLE-NQADVNIEDNEGNLPLHLAAKE 113
Query: 115 GRIDVLEELFR 125
G + V+E L +
Sbjct: 114 GHLRVVEFLVK 124
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 26/189 (13%)
Query: 68 DSNQFSALHIASQKVHVDKIKALLQVNPAW-CFAGDLDGSPLHLAAMKGRIDVLEELFRT 126
D + LH A+ +D +K + GDL+ +PLH A +G + ++ +L +
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK- 97
Query: 127 RPLAASATMIWGE--TILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLA--- 181
A ++I GE + +HL + + +L+ D + D GMT A
Sbjct: 98 --YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM---DQNGMTPLMWAAYR 152
Query: 182 ------VAVKLCFQNLVELVEEYCHSK---WGYVIRFLTTRTMI-----EVNALNANGFM 227
+ L F V L ++Y + W + T +++ V+A N G
Sbjct: 153 THSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGES 212
Query: 228 ALDTLAQSK 236
ALD Q K
Sbjct: 213 ALDLAKQRK 221
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 21/112 (18%)
Query: 73 SALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAAS 132
SALHIA +K + +K L++ +G+ +HL A GR F+
Sbjct: 92 SALHIAIEKRSLQCVKLLVE-----------NGADVHLRAC-GR------FFQKH---QG 130
Query: 133 ATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAV 184
+GE L L Q D + +LL+N P L A D G T+ V +
Sbjct: 131 TCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMI 182
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 21/112 (18%)
Query: 73 SALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAAS 132
SALHIA +K + +K L++ +G+ +HL A GR F+
Sbjct: 105 SALHIAIEKRSLQCVKLLVE-----------NGADVHLRAC-GR------FFQKH---QG 143
Query: 133 ATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAV 184
+GE L L Q D + +LL+N P L A D G T+ V +
Sbjct: 144 TCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMI 195
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 56 IRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKG 115
+R P+L D F+ +H A++ +D ++ LL+ + PLHLAA +G
Sbjct: 58 LRGANPDLK---DRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 116 RIDVLEELFR 125
+ V+E L +
Sbjct: 115 HLRVVEFLVK 124
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 68 DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTR 127
D +H+A++K D+++ L++ + + LHLA G +D + L
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV- 75
Query: 128 PLAASATMIW-GETILHLCVKHNQLDALKFLLDNMDD----PQFLNAEDDYGMTITQLAV 182
+W G+ +HL V N+ D + L++ + P+ L E D + ++
Sbjct: 76 ---GEVHSLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDE-REVNEIGS 131
Query: 183 AVKLC 187
VK C
Sbjct: 132 HVKHC 136
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 12/142 (8%)
Query: 63 LAGELDSNQFSALHIASQKVHVDKIKALL----QVNPAWCFAGDLDGSPLHLAAMKGRID 118
+A D + + LHIA + ++ + L+ Q +L +PLHLA I
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV----IT 56
Query: 119 VLEELFRTRPLAASATMIW---GETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGM 175
L + R A ++ M G+T HL +H L+ LLD+ P L+ E
Sbjct: 57 TLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSA-APGTLDLEARNYD 115
Query: 176 TITQLAVAVKLCFQNLVELVEE 197
+T L VAV Q V+L+ E
Sbjct: 116 GLTALHVAVNTECQETVQLLLE 137
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 56 IRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKG 115
+R P+L D F+ +H A++ +D ++ LL+ + PLHLAA +G
Sbjct: 58 LRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 116 RIDVLEELFR 125
+ V+E L +
Sbjct: 115 HLRVVEFLVK 124
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 56 IRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKG 115
+R P+L D F+ +H A++ +D ++ LL+ + PLHLAA +G
Sbjct: 58 LRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 116 RIDVLEELFR 125
+ V+E L +
Sbjct: 115 HLRVVEFLVK 124
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 104 DGS-PLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMD 162
DGS PLH+AA+ GR D++ L + A A LHL + +K LLD+
Sbjct: 85 DGSSPLHVAALHGRADLIPLLLK-HGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNA 143
Query: 163 DPQFLNAEDDYGMT 176
P N +D G T
Sbjct: 144 KP---NKKDLSGNT 154
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 137 WGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAV 184
+GE L L NQL +KFLL N P ++A D G T+ V V
Sbjct: 147 FGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEV 194
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 21/112 (18%)
Query: 73 SALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAAS 132
SALHIA +K + +K L++ +G+ +H A GR F+
Sbjct: 97 SALHIAIEKRSLQCVKLLVE-----------NGANVHARAC-GR------FFQK---GQG 135
Query: 133 ATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAV 184
+GE L L Q D + +LL+N P L A D G T+ V +
Sbjct: 136 TCFYFGELPLSLAACTKQWDVVSYLLENPHQPASLQATDSQGNTVLHALVXI 187
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 29/157 (18%)
Query: 39 FPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIA--------------SQKVHV 84
PLHAAA G++D + Q + G ++S + L IA Q V +
Sbjct: 108 IPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI 166
Query: 85 DKIKA-----LLQVNPAWCFAGDLD--------GSPLHLAAMKGRIDVLEELFRTRPLAA 131
+ + +L+ W +G ++ G+ LH+AA KG +VL+ L + R
Sbjct: 167 EAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDV 225
Query: 132 SATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLN 168
+ G T LH + +A + L++N+ D + +N
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN 262
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 68 DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTR 127
D + FS LH A ++ ++ L+ D +PLHLAA G D++++L + +
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 95
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 68 DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTR 127
D + FS LH A ++ ++ L+ D +PLHLAA G D++++L + +
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 90
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 90 LLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFR 125
+L N A A D DG +PLHLAA +G ++++E L +
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 68 DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRT 126
D + L++A+ H++ ++ LL+ N A A D G +PLHLAA G +++ E L +
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLK-NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK- 101
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFL 157
+A +G+T + + + D + L
Sbjct: 102 HGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 138 GETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
G+T LHL V H L FLL ++L+ ++D G T LA
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA 53
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 138 GETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
G+T LHL V H L FLL ++L+ ++D G T LA
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA 53
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 68 DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTR 127
D ++ LH A H+ ++ LLQ G + SPLH AA G +D++ +L +
Sbjct: 40 DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIV-KLLLSY 98
Query: 128 PLAASATMIWG 138
+ +A I+G
Sbjct: 99 GASRNAVNIFG 109
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 90 LLQVNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKH 148
+L N A A D +GS PLHLAA G ++V++ L +A +G+T + + +
Sbjct: 24 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA-DVNAQDKFGKTAFDISIDN 82
Query: 149 NQLDALKFL 157
D + L
Sbjct: 83 GNEDLAEIL 91
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 138 GETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
G T LHL ++ L+ +K LL+ D +NA+D +G T +++
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLEAGAD---VNAQDKFGKTAFDISI 80
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 106 SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQ 165
SPL LAA + + L +L + GET LH+ ++ L+A L++ +
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 166 F--LNAEDDYGMTITQLAV 182
F + +E G T +AV
Sbjct: 65 FEPMTSELYEGQTALHIAV 83
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 56 IRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKG 115
+R P+L D + +H A++ +D ++ LL+ + PLHLAA +G
Sbjct: 58 LRGANPDLK---DRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 116 RIDVLEELFR 125
+ V+E L +
Sbjct: 115 HLRVVEFLVK 124
>pdb|1YL6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) (Crystal Form B)
pdb|1YL6|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) (Crystal Form B)
pdb|1YL7|A Chain A, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|B Chain B, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|C Chain C, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|D Chain D, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|E Chain E, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|F Chain F, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|G Chain G, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|H Chain H, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
Length = 245
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 102 DLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFL 157
D+DG P+H + G + E LF T GET L ++H+ LD F+
Sbjct: 176 DVDGIPVHAVRLAGLVAHQEVLFGTE----------GET---LTIRHDSLDRTSFV 218
>pdb|1YL5|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) (Crystal Form A)
pdb|1YL5|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) (Crystal Form A)
Length = 247
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 102 DLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFL 157
D+DG P+H + G + E LF T GET L ++H+ LD F+
Sbjct: 178 DVDGIPVHAVRLAGLVAHQEVLFGTE----------GET---LTIRHDSLDRTSFV 220
>pdb|1C3V|A Chain A, Dihydrodipicolinate Reductase From Mycobacterium
Tuberculosis Complexed With Nadph And Pdc
pdb|1C3V|B Chain B, Dihydrodipicolinate Reductase From Mycobacterium
Tuberculosis Complexed With Nadph And Pdc
pdb|1P9L|A Chain A, Structure Of M. Tuberculosis Dihydrodipicolinate Reductase
In Complex With Nadh And 2,6 Pdc
pdb|1P9L|B Chain B, Structure Of M. Tuberculosis Dihydrodipicolinate Reductase
In Complex With Nadh And 2,6 Pdc
Length = 245
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 102 DLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFL 157
D+DG P+H + G + E LF T GET L ++H+ LD F+
Sbjct: 176 DVDGIPVHAVRLAGLVAHQEVLFGTE----------GET---LTIRHDSLDRTSFV 218
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,605,604
Number of Sequences: 62578
Number of extensions: 321322
Number of successful extensions: 1079
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 805
Number of HSP's gapped (non-prelim): 195
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)