Query 048256
Match_columns 102
No_of_seqs 153 out of 842
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 13:25:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i6s_A Subtilisin-like proteas 100.0 6.3E-33 2.2E-37 228.5 15.3 100 1-102 537-645 (649)
2 3vta_A Cucumisin; subtilisin-l 100.0 1.4E-30 4.9E-35 212.9 14.0 97 2-102 520-620 (621)
3 1xf1_A C5A peptidase, SCP; hyd 99.4 8E-13 2.7E-17 112.3 11.8 93 7-100 490-604 (926)
4 2ys4_A Hydrocephalus-inducing 94.1 0.2 7E-06 32.2 6.7 50 16-70 41-91 (122)
5 2e6j_A Hydin protein; PAPD, st 81.9 4.6 0.00016 24.7 5.9 53 17-70 27-81 (112)
6 3qbt_B Inositol polyphosphate 73.3 17 0.00057 23.8 8.0 67 3-70 21-101 (140)
7 2cql_A OK/SW-CL.103, 60S ribos 69.1 8.9 0.0003 24.1 4.6 32 34-65 14-45 (100)
8 2kq1_A BH0266 protein; solutio 68.1 0.71 2.4E-05 29.7 -0.8 40 30-69 66-109 (119)
9 2r39_A FIXG-related protein; s 68.0 20 0.00067 22.6 7.2 50 19-70 34-84 (118)
10 3qis_A Inositol polyphosphate 61.8 48 0.0016 24.9 8.2 67 3-70 24-104 (366)
11 3lyw_A YBBR family protein; st 60.9 4.6 0.00016 25.2 1.9 26 30-55 56-82 (90)
12 3idu_A Uncharacterized protein 52.6 45 0.0015 21.6 8.0 50 15-68 32-83 (127)
13 2qsv_A Uncharacterized protein 49.5 35 0.0012 23.6 5.3 64 18-86 21-85 (220)
14 1vq8_E 50S ribosomal protein L 43.1 57 0.0019 22.5 5.5 29 35-63 4-32 (178)
15 3u5e_H L8, RP24, YL11, 60S rib 41.5 61 0.0021 22.6 5.5 30 35-64 8-37 (191)
16 2l04_A Major tail protein V; b 39.8 62 0.0021 19.7 4.7 25 45-70 9-33 (91)
17 1rl6_A Protein (ribosomal prot 39.7 50 0.0017 22.7 4.7 29 35-63 6-34 (177)
18 2x41_A Beta-glucosidase; hydro 39.3 1.4E+02 0.0047 24.7 8.0 65 4-70 598-677 (721)
19 3iz5_F 60S ribosomal protein L 38.9 57 0.002 22.7 5.0 30 36-65 9-38 (190)
20 3j21_F 50S ribosomal protein L 37.2 57 0.0019 22.6 4.7 31 34-64 8-38 (184)
21 2bp3_A Filamin A; structural p 37.0 66 0.0023 19.1 5.6 69 17-101 24-93 (97)
22 3v2d_H 50S ribosomal protein L 36.6 55 0.0019 22.6 4.5 27 37-63 9-35 (180)
23 4a17_E RPL9, 60S ribosomal pro 36.6 56 0.0019 22.7 4.6 30 36-65 9-38 (188)
24 2zkr_e 60S ribosomal protein L 35.9 42 0.0014 23.4 3.9 28 36-63 9-36 (192)
25 4b7l_A Filamin-B; structural p 35.3 1E+02 0.0035 23.0 6.2 61 30-100 286-346 (347)
26 1nkw_E 50S ribosomal protein L 34.5 55 0.0019 23.3 4.3 30 34-63 33-62 (212)
27 2p26_A Integrin beta-2; hybrid 34.1 21 0.00071 26.4 2.1 25 45-69 74-99 (280)
28 2knq_A General secretion pathw 32.5 50 0.0017 21.4 3.6 33 38-70 75-115 (142)
29 2ee6_A Filamin-B; beta-sandwic 32.4 85 0.0029 19.0 4.6 58 30-101 41-98 (105)
30 2w0p_A Filamin-A; alternative 31.7 82 0.0028 18.6 4.6 58 30-101 33-90 (94)
31 1wic_A Hypothetical protein ri 31.5 1.1E+02 0.0038 20.1 6.7 49 19-70 38-87 (152)
32 3lxu_X Tripeptidyl-peptidase 2 31.3 55 0.0019 29.5 4.6 48 49-100 600-651 (1354)
33 3kd4_A Putative protease; stru 29.9 69 0.0023 25.1 4.6 38 30-67 424-461 (506)
34 2di8_A Filamin-B; beta-sandwic 29.8 1E+02 0.0034 19.0 4.6 58 30-101 41-98 (111)
35 1z9l_A Vesicle-associated memb 28.5 1.1E+02 0.0038 19.2 5.9 51 17-70 28-79 (128)
36 2eea_A Filamin-B; beta-sandwic 27.4 1.1E+02 0.0038 18.7 6.1 64 24-101 44-108 (115)
37 2l3u_A YBBR family protein; be 26.6 8.2 0.00028 23.8 -1.1 30 25-55 53-85 (98)
38 2k9u_A Gamma filamin; cytoskel 26.4 1.2E+02 0.0041 18.8 7.4 64 24-101 41-105 (119)
39 2dic_A Filamin-B; beta-sandwic 25.3 93 0.0032 18.8 3.8 57 30-100 41-97 (105)
40 1w8o_A Bacterial sialidase; 3D 25.2 2.1E+02 0.0074 22.0 6.7 61 6-70 364-426 (601)
41 2dlg_A Filamin-B; beta-sandwic 24.9 1.2E+02 0.0042 18.5 5.3 59 30-100 30-88 (102)
42 2cri_A Vesicle-associated memb 24.6 1.5E+02 0.005 19.2 6.0 50 18-70 33-83 (147)
43 3c0f_B Uncharacterized protein 24.3 23 0.00077 22.2 0.7 14 83-97 37-50 (91)
44 3t3p_B Integrin beta-3; integr 22.6 72 0.0025 25.4 3.5 27 44-70 80-107 (472)
45 2eec_A Filamin-B; beta-sandwic 22.2 1.5E+02 0.0053 18.6 5.6 58 30-101 51-108 (125)
46 1msp_A MSP, major sperm protei 21.9 1.6E+02 0.0054 18.6 7.0 48 20-70 29-77 (126)
47 3v4v_B Integrin beta-7; cell a 21.7 76 0.0026 25.5 3.4 27 44-70 101-128 (503)
48 2aan_A Auracyanin A; cupredoxi 20.9 65 0.0022 20.3 2.5 36 26-65 11-49 (139)
49 3obl_A Lectin; novel beta barr 20.7 1.9E+02 0.0064 19.0 5.5 44 3-46 29-73 (132)
No 1
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=100.00 E-value=6.3e-33 Score=228.54 Aligned_cols=100 Identities=31% Similarity=0.610 Sum_probs=88.0
Q ss_pred CCCCCcceEEEec-CCCe-----EEEEEEEEEccC-CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEeecc
Q 048256 1 LVNFNYPSITVPK-LSGS-----ITVTRRVKNVGS-PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNAS 73 (102)
Q Consensus 1 ~~dLNyPSi~v~~-~~~~-----~t~~RTVTNVg~-~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~~~~ 73 (102)
+.|||||||+++. +.+. ++|+|||||||+ +++|+|+|++|+|++|+|+|++|+|++.+||++|+|+|+.. ..
T Consensus 537 ~~~lNyPs~~~~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~-~~ 615 (649)
T 3i6s_A 537 SADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYI-GD 615 (649)
T ss_dssp CCCCCCSSEEEEECCSSCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEEC-CC
T ss_pred hhhcCCCcEEeecccCCCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEec-cc
Confidence 4699999999997 6666 899999999999 99999999999999999999999999999999999999986 34
Q ss_pred CCCCeEEEEEEEec--CCCCEEECeEEEEEC
Q 048256 74 VTKDYVFGELIWSD--EKQHQVRSPIVVKAV 102 (102)
Q Consensus 74 ~~~~~~fG~l~W~~--~~gh~VrsPiav~~~ 102 (102)
..+.|.||+|+|+| |+ |.|||||+|++.
T Consensus 616 ~~~~~~fg~l~w~~~~~~-h~vrsPi~v~~~ 645 (649)
T 3i6s_A 616 EGQSRNVGSITWVEQNGN-HSVRSPIVTSPI 645 (649)
T ss_dssp ---CCCEEEEEEEETTSC-CEEEEEEEEEEC
T ss_pred CCCceEEEEEEEEcCCCC-eEEEEeEEEEEc
Confidence 45678999999999 88 999999999874
No 2
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=99.97 E-value=1.4e-30 Score=212.85 Aligned_cols=97 Identities=31% Similarity=0.610 Sum_probs=89.2
Q ss_pred CCCCcceEEEe---cCCCeEEEEEEEEEccC-CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEeeccCCCC
Q 048256 2 VNFNYPSITVP---KLSGSITVTRRVKNVGS-PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNASVTKD 77 (102)
Q Consensus 2 ~dLNyPSi~v~---~~~~~~t~~RTVTNVg~-~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~~~~~~~~ 77 (102)
.|||||||++. .+..+++|+|||||||+ +++|++++++|+|++|+|+|++|+|++.+||++|+|+|+.. ..+.
T Consensus 520 ~~lN~pS~~v~~~~~~~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~---~~~~ 596 (621)
T 3vta_A 520 WDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGS---IKGF 596 (621)
T ss_dssp GGSCCSSEEEECCSSCCEEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEEC---CCSS
T ss_pred cccccccEEEEccCCCceEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEec---CCCc
Confidence 58999999996 44568999999999999 99999999999999999999999999999999999999864 4578
Q ss_pred eEEEEEEEecCCCCEEECeEEEEEC
Q 048256 78 YVFGELIWSDEKQHQVRSPIVVKAV 102 (102)
Q Consensus 78 ~~fG~l~W~~~~gh~VrsPiav~~~ 102 (102)
+.||+|+|+||+ |.|||||+|+.+
T Consensus 597 ~~~g~l~w~d~~-h~Vr~Pi~v~~~ 620 (621)
T 3vta_A 597 VVSASLVWSDGV-HYVRSPITITSL 620 (621)
T ss_dssp EEEEEEEEECSS-CCCEEEEEEECC
T ss_pred eEEEEEEEEcCC-EEEEeCEEEEEe
Confidence 999999999999 999999999864
No 3
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=99.44 E-value=8e-13 Score=112.28 Aligned_cols=93 Identities=25% Similarity=0.288 Sum_probs=76.3
Q ss_pred ceEEEecCCCeEEEEEEEEEccC-C--ceEEEEEeC--CCceEEEEEcCeEEEeec-------CcEEEEEEEEEEee---
Q 048256 7 PSITVPKLSGSITVTRRVKNVGS-P--GTYQARVKT--PQGVSVTIAPKSLKFINV-------GEEKSFKVIIKAKN--- 71 (102)
Q Consensus 7 PSi~v~~~~~~~t~~RTVTNVg~-~--stY~a~v~~--p~gv~V~V~P~~l~f~~~-------~~~~~f~Vt~~~~~--- 71 (102)
++|.+..+....+++|||||+|+ . .+|++.+.. |.|..++|+|..|.|... ||+++|+|+|+...
T Consensus 490 ~~i~l~~~~~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv~ag~~~~~~vt~~~~~~~~ 569 (926)
T 1xf1_A 490 SKVHLNNVSDKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTVPIDASRFSK 569 (926)
T ss_dssp SCEEEEEECSEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEECTTEEEEEEEEEECHHHHH
T ss_pred ceeeccccCccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEECCCCEEEEEEEEEcCccch
Confidence 36777777778899999999997 4 578888875 779999999999999877 99999999999741
Q ss_pred ----ccCCCCeEEEEEEEe--cCCCCE-EECeEEEE
Q 048256 72 ----ASVTKDYVFGELIWS--DEKQHQ-VRSPIVVK 100 (102)
Q Consensus 72 ----~~~~~~~~fG~l~W~--~~~gh~-VrsPiav~ 100 (102)
..+.+.+.||.|.|+ +++ |. ||+|+++.
T Consensus 570 ~~~~~~~~~~~~~G~i~~~~~~~~-~~~v~~P~~~~ 604 (926)
T 1xf1_A 570 DLLAQMKNGYFLEGFVRFKQDPTK-EELMSIPYIGF 604 (926)
T ss_dssp HHHHHSTTCEEEEEEEEEESSTTS-CCCEEEEEEEE
T ss_pred hhcccccCCcEEEEEEEEEeCCCC-CCEEEeeeEEE
Confidence 123456899999999 566 65 99999985
No 4
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.14 E-value=0.2 Score=32.16 Aligned_cols=50 Identities=24% Similarity=0.380 Sum_probs=40.2
Q ss_pred CeEEEEEEEEEccC-CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEe
Q 048256 16 GSITVTRRVKNVGS-PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAK 70 (102)
Q Consensus 16 ~~~t~~RTVTNVg~-~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~ 70 (102)
...+.+=.++|+|+ +..|+.....| .+|+|+.-.. +.||...++|+|.+.
T Consensus 41 ~~~~~~~~l~N~g~~~~~f~~~~~~~----F~i~P~~g~L-~pg~~~~i~V~F~P~ 91 (122)
T 2ys4_A 41 YSTQKILLVRNIGNKNAVFHIKTCRP----FSIEPAIGTL-NVGESMQLEVEFEPQ 91 (122)
T ss_dssp SCEEEEEEEECCSSSCEEEEEECCTT----EEEESSEEEE-CTTCEEEEEEEECCS
T ss_pred CeEEEEEEEEECCCCCEEEEEecCCC----eEEECCcCEE-CCCCEEEEEEEEEcC
Confidence 35566667899999 88887765443 5579999998 589999999999986
No 5
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.93 E-value=4.6 Score=24.72 Aligned_cols=53 Identities=13% Similarity=0.158 Sum_probs=38.9
Q ss_pred eEEEEEEEEEccC-CceEEEEEeC-CCceEEEEEcCeEEEeecCcEEEEEEEEEEe
Q 048256 17 SITVTRRVKNVGS-PGTYQARVKT-PQGVSVTIAPKSLKFINVGEEKSFKVIIKAK 70 (102)
Q Consensus 17 ~~t~~RTVTNVg~-~stY~a~v~~-p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~ 70 (102)
..+..=+++|.|+ +..|+..... +.+-..+++|+.=.. ..|+++.++|+|.+.
T Consensus 27 ~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i-~pg~~~~i~V~f~~~ 81 (112)
T 2e6j_A 27 AHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGII-EPSGVQAIQISFSSI 81 (112)
T ss_dssp CEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEE-CTTBCCEEEEEECCC
T ss_pred EEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEE-CCCCEEEEEEEEECC
Confidence 4455556899999 9999883211 123336679999888 589999999999975
No 6
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=73.27 E-value=17 Score=23.83 Aligned_cols=67 Identities=13% Similarity=0.073 Sum_probs=45.3
Q ss_pred CCCcceEEEecCC---------CeEEEEEEEEEccC-CceEEEEEeCC----CceEEEEEcCeEEEeecCcEEEEEEEEE
Q 048256 3 NFNYPSITVPKLS---------GSITVTRRVKNVGS-PGTYQARVKTP----QGVSVTIAPKSLKFINVGEEKSFKVIIK 68 (102)
Q Consensus 3 dLNyPSi~v~~~~---------~~~t~~RTVTNVg~-~stY~a~v~~p----~gv~V~V~P~~l~f~~~~~~~~f~Vt~~ 68 (102)
+-|.|.|++.... ...+-+=+++|.|. +..|+...... ..--.+|+|..=.+ .+|++....|++.
T Consensus 21 Ne~~P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L-~Pge~~~I~v~~~ 99 (140)
T 3qbt_B 21 NDFLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVY 99 (140)
T ss_dssp HHTSCCEEESCCEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEEC
T ss_pred hccCCceEeeeeeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCccccc-CCCCeeEEEEEEE
Confidence 3467888885211 12333445799999 99999974321 11125568999888 6899999999998
Q ss_pred Ee
Q 048256 69 AK 70 (102)
Q Consensus 69 ~~ 70 (102)
..
T Consensus 100 v~ 101 (140)
T 3qbt_B 100 VS 101 (140)
T ss_dssp BC
T ss_pred Ec
Confidence 53
No 7
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=69.15 E-value=8.9 Score=24.13 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=25.4
Q ss_pred EEEEeCCCceEEEEEcCeEEEeecCcEEEEEE
Q 048256 34 QARVKTPQGVSVTIAPKSLKFINVGEEKSFKV 65 (102)
Q Consensus 34 ~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~V 65 (102)
+..|..|+||+|++.-..++++.+..++++.+
T Consensus 14 k~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~ 45 (100)
T 2cql_A 14 NQTVDIPENVDITLKGRTVIVKGPRGTLRRDF 45 (100)
T ss_dssp CEEECCCSSCEEEEETTEEEEEETTEEEEEEC
T ss_pred cCcEEcCCCCEEEEeCCEEEEECCCceEEEEe
Confidence 45688899999999999999987666555444
No 8
>2kq1_A BH0266 protein; solution NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus halodurans}
Probab=68.14 E-value=0.71 Score=29.72 Aligned_cols=40 Identities=18% Similarity=0.315 Sum_probs=26.7
Q ss_pred CceEEE--EEe-CCCceEEEEEcCeEEEe-ecCcEEEEEEEEEE
Q 048256 30 PGTYQA--RVK-TPQGVSVTIAPKSLKFI-NVGEEKSFKVIIKA 69 (102)
Q Consensus 30 ~stY~a--~v~-~p~gv~V~V~P~~l~f~-~~~~~~~f~Vt~~~ 69 (102)
.++|.+ .++ .|.|++++++|+.+..+ +..++++|.|++..
T Consensus 66 ~G~~~vpv~v~~lp~~v~v~v~P~~V~V~i~~~~~k~~pV~v~~ 109 (119)
T 2kq1_A 66 EGSHTVDVEHRGFPGDLAVTVEPRMARVQLEERQTVSVPVTVEM 109 (119)
T ss_dssp BEEEEEECEEESSCTTSEEEESCCEEEEEEESCCCCCCCCCCCC
T ss_pred CCeEEEEEEEecCCCCeEEEEcCCEEEEEEEEEEEEEEEEEEEE
Confidence 345554 456 68999999999988865 23445666665544
No 9
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=68.01 E-value=20 Score=22.55 Aligned_cols=50 Identities=24% Similarity=0.238 Sum_probs=40.1
Q ss_pred EEEEEEEEccC-CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEe
Q 048256 19 TVTRRVKNVGS-PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAK 70 (102)
Q Consensus 19 t~~RTVTNVg~-~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~ 70 (102)
.++=.+.|-.. +..|..+++.++|+++. .|..+.. +++|.+++.|.+...
T Consensus 34 ~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v-~~g~~~~~~v~v~~~ 84 (118)
T 2r39_A 34 TYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQV-EPGEVLNLPMSLGAD 84 (118)
T ss_dssp EEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEE-CTTCEEEEEEEEEEC
T ss_pred EEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEE-CCCCEEEEEEEEEEC
Confidence 45566899998 99999999988886653 4666777 589999999999875
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=61.78 E-value=48 Score=24.92 Aligned_cols=67 Identities=13% Similarity=0.115 Sum_probs=43.1
Q ss_pred CCCcceEEEecC---------CCeEEEEEEEEEccC-CceEEEEEeCCCc-eE---EEEEcCeEEEeecCcEEEEEEEEE
Q 048256 3 NFNYPSITVPKL---------SGSITVTRRVKNVGS-PGTYQARVKTPQG-VS---VTIAPKSLKFINVGEEKSFKVIIK 68 (102)
Q Consensus 3 dLNyPSi~v~~~---------~~~~t~~RTVTNVg~-~stY~a~v~~p~g-v~---V~V~P~~l~f~~~~~~~~f~Vt~~ 68 (102)
|-+.|++++... ....+-+=|++|.|. +..|...-..... .. ++|+|..-.. .+|++....+++.
T Consensus 24 n~~~P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l-~Pge~~~i~l~~~ 102 (366)
T 3qis_A 24 NDFLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVY 102 (366)
T ss_dssp ----CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEEC
T ss_pred hccCCeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEE-CCCCEEEEEEEEE
Confidence 346688888531 113333446799999 9999885432222 22 6789999888 5899999999887
Q ss_pred Ee
Q 048256 69 AK 70 (102)
Q Consensus 69 ~~ 70 (102)
..
T Consensus 103 v~ 104 (366)
T 3qis_A 103 VS 104 (366)
T ss_dssp BC
T ss_pred EC
Confidence 64
No 11
>3lyw_A YBBR family protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.90A {Desulfitobacterium hafniense} PDB: 2kpu_A 2l5n_A
Probab=60.86 E-value=4.6 Score=25.20 Aligned_cols=26 Identities=19% Similarity=0.457 Sum_probs=20.7
Q ss_pred CceEEEEEeCCCceE-EEEEcCeEEEe
Q 048256 30 PGTYQARVKTPQGVS-VTIAPKSLKFI 55 (102)
Q Consensus 30 ~stY~a~v~~p~gv~-V~V~P~~l~f~ 55 (102)
.-.|.+.+..|.|++ +.|+|+.+++.
T Consensus 56 ~~~~~V~v~~P~G~~lv~vsP~~V~~~ 82 (90)
T 3lyw_A 56 EHDYEVKVEPIPNIKIVEISPRVVTLQ 82 (90)
T ss_dssp EEEEECEECCCTTEEEEEEESSEEEEE
T ss_pred cEeEEEEEECCCCCEEEEEccceEEEE
Confidence 457888899999964 58999988874
No 12
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=52.56 E-value=45 Score=21.61 Aligned_cols=50 Identities=20% Similarity=0.166 Sum_probs=34.1
Q ss_pred CCeEEEEEEEEEccC-C-ceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEE
Q 048256 15 SGSITVTRRVKNVGS-P-GTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIK 68 (102)
Q Consensus 15 ~~~~t~~RTVTNVg~-~-stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~ 68 (102)
+...+++=||+|.|. + +-|++.+-. .|-.+.-. ...+ +.|+++++++.+.
T Consensus 32 G~~~ti~vtV~N~G~~~a~~~~V~lyv-ng~~v~t~--~v~L-a~G~s~tv~f~~~ 83 (127)
T 3idu_A 32 NKLAEYEVHVKNLGGIGVPSTKVRVYI-NGTLYKNW--TVSL-GPKEEKVLTFNWT 83 (127)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEEEEEE-TTEEEEEE--EEEE-CTTCEEEEEEEEC
T ss_pred CCEEEEEEEEEECCCCccCCcEEEEEE-CCEEEeeE--Eecc-CCCCeEEEEEEEE
Confidence 457899999999998 4 678887654 45444333 2345 5788877766665
No 13
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=49.52 E-value=35 Score=23.56 Aligned_cols=64 Identities=14% Similarity=0.058 Sum_probs=40.1
Q ss_pred EEEEEEEEEccC-CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEeeccCCCCeEEEEEEEe
Q 048256 18 ITVTRRVKNVGS-PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNASVTKDYVFGELIWS 86 (102)
Q Consensus 18 ~t~~RTVTNVg~-~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~~~~~~~~~~fG~l~W~ 86 (102)
.+..=+++|.|+ +-.++.. ..|.-+.+..+|..| ..||+...+++++.. .....+...++|.-.
T Consensus 21 ~~~~~~i~N~g~~pl~i~~~-~~p~~~~~~~~~~~I---~PG~~g~I~vt~~~~-~~~~~G~~~~~i~v~ 85 (220)
T 2qsv_A 21 GVVRLVVNNTDESDLQVAVV-SLPSFVSLDDRAFRL---QAREPRELNLSLAVP-RNMPPGMKDEPLVLE 85 (220)
T ss_dssp CEEEEEEEECSSSCEEEEEE-ECCTTEECSCCEEEE---CSSSCEEEEEEECCC-TTCCSEEEEEEEEEE
T ss_pred ceEEEEEEeCCCCceEEEec-cCCCceEeeeCccee---CCCCceEEEEEEcch-hcccCCceeeEEEEE
Confidence 334445899997 6666653 347776765555554 579999999999875 222223344556543
No 14
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=43.15 E-value=57 Score=22.53 Aligned_cols=29 Identities=7% Similarity=0.066 Sum_probs=22.2
Q ss_pred EEEeCCCceEEEEEcCeEEEeecCcEEEE
Q 048256 35 ARVKTPQGVSVTIAPKSLKFINVGEEKSF 63 (102)
Q Consensus 35 a~v~~p~gv~V~V~P~~l~f~~~~~~~~f 63 (102)
..+..|+|++|++.-..++++.+..+++.
T Consensus 4 ~pI~IP~gV~v~i~~~~vtVkGpkG~L~~ 32 (178)
T 1vq8_E 4 VELEIPEDVDAEQDHLDITVEGDNGSVTR 32 (178)
T ss_dssp EEEECCTTCEEEEETTEEEEEETTEEEEE
T ss_pred ccEEcCCCCEEEEeCCEEEEECCCeEEEE
Confidence 35778999999999999998766555444
No 15
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=41.49 E-value=61 Score=22.58 Aligned_cols=30 Identities=20% Similarity=0.423 Sum_probs=22.9
Q ss_pred EEEeCCCceEEEEEcCeEEEeecCcEEEEE
Q 048256 35 ARVKTPQGVSVTIAPKSLKFINVGEEKSFK 64 (102)
Q Consensus 35 a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~ 64 (102)
..+..|+|++|++.-..++++.+..+++..
T Consensus 8 ~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~ 37 (191)
T 3u5e_H 8 QQIEVPEGVTVSIKSRIVKVVGPRGTLTKN 37 (191)
T ss_dssp EEEECCTTCEEEEETTEEEEEETTEEEEEE
T ss_pred ccEECCCCcEEEEeCCEEEEEcCCeEEEEE
Confidence 357789999999999889888766655543
No 16
>2l04_A Major tail protein V; bacteriophage lambda, phage tail, GPV, IG-like domain, viral; NMR {Enterobacteria phage lambda}
Probab=39.76 E-value=62 Score=19.72 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=20.2
Q ss_pred EEEEcCeEEEeecCcEEEEEEEEEEe
Q 048256 45 VTIAPKSLKFINVGEEKSFKVIIKAK 70 (102)
Q Consensus 45 V~V~P~~l~f~~~~~~~~f~Vt~~~~ 70 (102)
|++.|..+.+. .|++..++.++.+.
T Consensus 9 i~l~~~~~~l~-vG~t~~L~atv~P~ 33 (91)
T 2l04_A 9 MTVTPASTSVV-KGQSTTLTVAFQPE 33 (91)
T ss_dssp EEEECCCEEEE-TTCEEEEEEEECCS
T ss_pred EEEeCCceEEE-cCCEEEEEEEEecc
Confidence 66789999994 89988888887764
No 17
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=39.71 E-value=50 Score=22.71 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=21.5
Q ss_pred EEEeCCCceEEEEEcCeEEEeecCcEEEE
Q 048256 35 ARVKTPQGVSVTIAPKSLKFINVGEEKSF 63 (102)
Q Consensus 35 a~v~~p~gv~V~V~P~~l~f~~~~~~~~f 63 (102)
..+..|+||+|++.-..++++.+..++++
T Consensus 6 ~pI~IP~gV~V~i~~~~VtVkGpkG~L~~ 34 (177)
T 1rl6_A 6 KPIEIPAGVTVTVNGNTVTVKGPKGELTR 34 (177)
T ss_dssp -CEECCTTCEEEEETTEEEEEETTEEEEE
T ss_pred cceEcCCCCEEEEeCCEEEEECCCeEEEE
Confidence 34678999999999888888766555544
No 18
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=39.32 E-value=1.4e+02 Score=24.65 Aligned_cols=65 Identities=29% Similarity=0.520 Sum_probs=40.0
Q ss_pred CCcceEEEecC-----CCeEEEEEEEEEccC-CceE--EEEEeCCCceEEEEEcC-eEE-Ee-----ecCcEEEEEEEEE
Q 048256 4 FNYPSITVPKL-----SGSITVTRRVKNVGS-PGTY--QARVKTPQGVSVTIAPK-SLK-FI-----NVGEEKSFKVIIK 68 (102)
Q Consensus 4 LNyPSi~v~~~-----~~~~t~~RTVTNVg~-~stY--~a~v~~p~gv~V~V~P~-~l~-f~-----~~~~~~~f~Vt~~ 68 (102)
|-|=+|....+ ....+++=+|||.|+ .+.- ..-+..|.+- + ..|. +|. |. ++||+++.++++.
T Consensus 598 LSYTtF~ys~~~~~~~~~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~-~-~~P~k~L~gF~kv~~L~pGes~~V~~~l~ 675 (721)
T 2x41_A 598 LSYTTFEYSDLNVSFDGETLRVQYRIENTGGRAGKEVSQVYIKAPKGK-I-DKPFQELKAFHKTRLLNPGESEEVVLEIP 675 (721)
T ss_dssp BCSSCEEEEEEEEEECSSEEEEEEEEEECSSSCBCCEEEEEEECCCSS-S-CCCSCEEEEEEECCCBCTTCEEEEEEEEE
T ss_pred CCcceeEeeceEeecCCCeEEEEEEEEECCCCCCcEEeeEEEccCCCC-C-CCchHHhhcccccccCCCCCeEEEEEEEC
Confidence 45556655543 345789999999998 5444 4445666431 1 1343 232 44 4589999888887
Q ss_pred Ee
Q 048256 69 AK 70 (102)
Q Consensus 69 ~~ 70 (102)
..
T Consensus 676 ~~ 677 (721)
T 2x41_A 676 VR 677 (721)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 19
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=38.89 E-value=57 Score=22.70 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=23.4
Q ss_pred EEeCCCceEEEEEcCeEEEeecCcEEEEEE
Q 048256 36 RVKTPQGVSVTIAPKSLKFINVGEEKSFKV 65 (102)
Q Consensus 36 ~v~~p~gv~V~V~P~~l~f~~~~~~~~f~V 65 (102)
.+..|+|++|++.-..++++.+..+++..+
T Consensus 9 ~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~ 38 (190)
T 3iz5_F 9 TMEIPEGVTVQVAAKVVTVEGPRGKLTRNF 38 (190)
T ss_dssp EEECCTTCEEEEETTEEEEEETTEEEEEEC
T ss_pred cEECCCCCEEEEeCCEEEEECCCceEEEEc
Confidence 577899999999999999987766555443
No 20
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.24 E-value=57 Score=22.60 Aligned_cols=31 Identities=26% Similarity=0.326 Sum_probs=23.1
Q ss_pred EEEEeCCCceEEEEEcCeEEEeecCcEEEEE
Q 048256 34 QARVKTPQGVSVTIAPKSLKFINVGEEKSFK 64 (102)
Q Consensus 34 ~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~ 64 (102)
.-.+..|+|++|++.-..++++.+..+++..
T Consensus 8 ~~~I~IP~gV~v~i~~~~V~VkGpkG~L~~~ 38 (184)
T 3j21_F 8 REEVEIPEGVEVTVEGYKVKVKGPKGELERE 38 (184)
T ss_dssp EEEEECCSSCEEEESSSEEEEECSSCEEEEE
T ss_pred eEEEeCCCCcEEEEeCCEEEEEcCCeEEEEE
Confidence 3467889999999998889887665555443
No 21
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A
Probab=36.97 E-value=66 Score=19.11 Aligned_cols=69 Identities=16% Similarity=0.236 Sum_probs=41.9
Q ss_pred eEEEEEEEEEccC-CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEeeccCCCCeEEEEEEEecCCCCEEEC
Q 048256 17 SITVTRRVKNVGS-PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRS 95 (102)
Q Consensus 17 ~~t~~RTVTNVg~-~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~~~~~~~~~~fG~l~W~~~~gh~Vrs 95 (102)
...| +|.-.+. .....+.+..|.++.+.+ .- ++.-+|.|++... . .+.+. =++.| +++ |.-.|
T Consensus 24 ~~~F--~v~t~dag~~~l~v~v~~p~~~~~~v-----~d---~~dGty~v~Y~p~--~-~G~y~-i~V~~-~g~-~I~gS 87 (97)
T 2bp3_A 24 PATF--TVNTKDAGEGGLSLAIEGPSKAEISC-----TD---NQDGTCSVSYLPV--L-PGDYS-ILVKY-NEQ-HVPGS 87 (97)
T ss_dssp CEEE--EEECTTCCSEEEEEEEEESSCCEEEE-----EE---CSSSEEEEEEECS--S-CEEEE-EEEEE-TTE-ECTTC
T ss_pred cEEE--EEEECCCCCCcEEEEEECCCCCEEEE-----EE---CCCCEEEEEEEeC--C-CCcEE-EEEEE-CCE-ECCCc
Confidence 3445 4555554 667788888888866543 21 2234899999875 2 23332 34556 466 88889
Q ss_pred eEEEEE
Q 048256 96 PIVVKA 101 (102)
Q Consensus 96 Piav~~ 101 (102)
|..+..
T Consensus 88 PF~v~v 93 (97)
T 2bp3_A 88 PFTARV 93 (97)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 987753
No 22
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=36.60 E-value=55 Score=22.55 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=19.3
Q ss_pred EeCCCceEEEEEcCeEEEeecCcEEEE
Q 048256 37 VKTPQGVSVTIAPKSLKFINVGEEKSF 63 (102)
Q Consensus 37 v~~p~gv~V~V~P~~l~f~~~~~~~~f 63 (102)
+..|+||+|++.-..+++..+..+++.
T Consensus 9 I~IP~gV~v~i~~~~v~VkGpkG~L~~ 35 (180)
T 3v2d_H 9 IPVPKGVSVEVAPGRVKVKGPKGELEV 35 (180)
T ss_dssp EECCTTCEEEEETTEEEEECSSCEEEE
T ss_pred eeCCCCcEEEEeCCEEEEEeCCcEEEE
Confidence 567888888888888888655554444
No 23
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=36.56 E-value=56 Score=22.73 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=23.4
Q ss_pred EEeCCCceEEEEEcCeEEEeecCcEEEEEE
Q 048256 36 RVKTPQGVSVTIAPKSLKFINVGEEKSFKV 65 (102)
Q Consensus 36 ~v~~p~gv~V~V~P~~l~f~~~~~~~~f~V 65 (102)
.+..|+|++|++.-..++++.+..+++..+
T Consensus 9 ~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~ 38 (188)
T 4a17_E 9 NVPIPDKVTITAKQRVVEVKGPLGTIKRAF 38 (188)
T ss_dssp ECCCCTTCEEEEETTEEEEEETTEEEEEEC
T ss_pred cEECCCCcEEEEeCCEEEEEcCCeEEEEEc
Confidence 467899999999999999987766655543
No 24
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=35.90 E-value=42 Score=23.42 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=20.9
Q ss_pred EEeCCCceEEEEEcCeEEEeecCcEEEE
Q 048256 36 RVKTPQGVSVTIAPKSLKFINVGEEKSF 63 (102)
Q Consensus 36 ~v~~p~gv~V~V~P~~l~f~~~~~~~~f 63 (102)
.+..|+|++|++.-..++++.+..+++.
T Consensus 9 pI~IP~gV~V~i~~~~VtVkGpkG~L~~ 36 (192)
T 2zkr_e 9 TVDIPENVDITLKGRTVIVKGPRGTLRR 36 (192)
T ss_dssp -CCCCTTCEEEEETTEEEEEETTEEEEE
T ss_pred cEEcCCCCEEEEeCCEEEEECCCeEEEE
Confidence 4667899999999999888766555444
No 25
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=35.29 E-value=1e+02 Score=23.03 Aligned_cols=61 Identities=21% Similarity=0.234 Sum_probs=39.0
Q ss_pred CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEeeccCCCCeEEEEEEEecCCCCEEECeEEEE
Q 048256 30 PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVK 100 (102)
Q Consensus 30 ~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~~~~~~~~~~fG~l~W~~~~gh~VrsPiav~ 100 (102)
.+.-.+.|..|.|-.+ |..+... .+...+|+|++.+. ..+.+ .=++.| +|. |.=.||..|.
T Consensus 286 ~g~l~v~V~~P~G~~~---~~~v~~~-~~~~gty~v~y~P~---~~G~~-~I~V~~-~g~-~IpgSPF~v~ 346 (347)
T 4b7l_A 286 QGDVMVFVEDPEGNKE---EAQVTPD-SDKNKTYSVEYLPK---VTGLH-KVTVLF-AGQ-HISKSPFEVS 346 (347)
T ss_dssp SCCEEEEEECTTSCEE---ECEEEES-STTCSEEEEEECCC---SSSEE-EEEEEE-TTE-ECTTCSEEEE
T ss_pred CCceEEEEECCCCCee---cCEEEEE-cCCCCEEEEEEEEC---CCEeE-EEEEEE-CCE-ECCCCCEEee
Confidence 5667788888888553 3334442 34557899999875 23333 235666 466 8888898775
No 26
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=34.46 E-value=55 Score=23.33 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=21.4
Q ss_pred EEEEeCCCceEEEEEcCeEEEeecCcEEEE
Q 048256 34 QARVKTPQGVSVTIAPKSLKFINVGEEKSF 63 (102)
Q Consensus 34 ~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f 63 (102)
+..|..|+||+|++.-..++++....++++
T Consensus 33 k~pI~IP~gV~V~i~~~~VtVKGPkG~L~~ 62 (212)
T 1nkw_E 33 KQPIAVPSGVTVNAQDGVFKVKGPKGELTV 62 (212)
T ss_pred ccceecCCCcEEEEeCCEEEEECCCEEEEE
Confidence 345778889999988888888755444443
No 27
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*
Probab=34.06 E-value=21 Score=26.39 Aligned_cols=25 Identities=16% Similarity=0.478 Sum_probs=19.4
Q ss_pred EEEEcCeEEEe-ecCcEEEEEEEEEE
Q 048256 45 VTIAPKSLKFI-NVGEEKSFKVIIKA 69 (102)
Q Consensus 45 V~V~P~~l~f~-~~~~~~~f~Vt~~~ 69 (102)
+.|+|..+.++ +.|+.++|+|+|+-
T Consensus 74 vQi~PQ~v~l~LRpGd~vsF~V~vry 99 (280)
T 2p26_A 74 KQLSPQKVTLYLRPGQAAAFNVTFRR 99 (280)
T ss_dssp SSEECSEEEEEECTTCCEEEEEEECC
T ss_pred eeeccceEEEEecCCCeEEEEEEEEe
Confidence 67888765543 57999999999974
No 28
>2knq_A General secretion pathway protein H; GSPH, minor pseudopilin, methylation, transport protein, Pro transport; NMR {Escherichia coli}
Probab=32.46 E-value=50 Score=21.45 Aligned_cols=33 Identities=12% Similarity=0.342 Sum_probs=26.0
Q ss_pred eCCCceEEEEEc--------CeEEEeecCcEEEEEEEEEEe
Q 048256 38 KTPQGVSVTIAP--------KSLKFINVGEEKSFKVIIKAK 70 (102)
Q Consensus 38 ~~p~gv~V~V~P--------~~l~f~~~~~~~~f~Vt~~~~ 70 (102)
.-|.++.+.+.| ..+.|...||--.|+++|...
T Consensus 75 ~~p~~~~l~l~p~~~~~~~~Pqi~~~psGe~tPf~L~l~~~ 115 (142)
T 2knq_A 75 DWDEELSIHLQPFKPDDSNQPQVVILADGQITPFSLLMANA 115 (142)
T ss_dssp TTCSSEEEEEESSCCCCCSSCSEEECTTSBBCCEEEEEEET
T ss_pred cCCCCcEEEEeecccccCCCCeEEEeCCCCccCEEEEEEeC
Confidence 346788888863 457777889999999999975
No 29
>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.38 E-value=85 Score=18.98 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=37.0
Q ss_pred CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEeeccCCCCeEEEEEEEecCCCCEEECeEEEEE
Q 048256 30 PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKA 101 (102)
Q Consensus 30 ~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~~~~~~~~~~fG~l~W~~~~gh~VrsPiav~~ 101 (102)
.....+.+..|.+..+.+ . .++--+|.|++... . .+.|. =++.| +++ |.-.||..+..
T Consensus 41 ~~~l~v~v~~p~~~~v~v-------~-d~~dGty~v~Y~p~--~-~G~y~-I~V~~-~g~-~I~gSPF~v~v 98 (105)
T 2ee6_A 41 AGGLSIAVEGPSKAEITF-------D-DHKNGSCGVSYIAQ--E-PGNYE-VSIKF-NDE-HIPESPYLVPV 98 (105)
T ss_dssp CCCEEEEEESSSCEEEEE-------C-CCCSSCCCEEEEES--S-CEEEE-EEEEE-TTE-ECTTCSEEEEE
T ss_pred CCcEEEEEECCCCCEEEE-------E-ECCCCEEEEEEEEC--C-CceEE-EEEEE-CCE-ECCCcCEEEEE
Confidence 666888888888866532 1 23335788888875 1 23332 34555 466 88889987753
No 30
>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A
Probab=31.70 E-value=82 Score=18.60 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=35.4
Q ss_pred CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEeeccCCCCeEEEEEEEecCCCCEEECeEEEEE
Q 048256 30 PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKA 101 (102)
Q Consensus 30 ~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~~~~~~~~~~fG~l~W~~~~gh~VrsPiav~~ 101 (102)
.....+.|..|.++.+.+ . .++.-+|.|++... . .+.|. =++.| +++ |.-.||..+..
T Consensus 33 ~~~~~v~v~gp~~~~~~v-------~-d~~dGty~v~Y~p~--~-~G~y~-I~V~~-~g~-~I~gSPF~v~v 90 (94)
T 2w0p_A 33 AGGLAIAVEGPSKAEISF-------E-DRKDGSCGVAYVVQ--E-PGDYE-VSVKF-NEE-HIPDSPFVVPV 90 (94)
T ss_dssp SCCEEEEEEESSCCEEEE-------E-ECTTSCEEEEEECS--S-CEEEE-EEEEE-TTE-ECTTCSEEEEE
T ss_pred CCcEEEEEECCCCCeEEE-------E-ECCCCEEEEEEEEC--C-CceEE-EEEEE-CCE-ECCCCCEEEEE
Confidence 455777788887765432 2 23335788888875 1 23332 24555 466 88889987753
No 31
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=31.48 E-value=1.1e+02 Score=20.07 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=39.5
Q ss_pred EEEEEEEEccC-CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEe
Q 048256 19 TVTRRVKNVGS-PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAK 70 (102)
Q Consensus 19 t~~RTVTNVg~-~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~ 70 (102)
+-.=+++|..+ .-.|++.-.+|.-+. |.|..=.. +.|++....|++.+.
T Consensus 38 ~~~l~L~N~s~~~VaFKVKTT~p~~y~--VrP~~GiI-~P~~s~~V~V~lq~~ 87 (152)
T 1wic_A 38 KTLIVLTNVTKNIVAFKVRTTAPEKYR--VKPSNSSC-DPGASIDIIVSPHGG 87 (152)
T ss_dssp CEEEEEEBCSSSCEEEEEEESCTTTEE--EESSEEEE-CTTCEEEEEEEECSS
T ss_pred EEEEEEEcCCCCeEEEEEECCCCCcee--ecCCCcEE-CCCCeEEEEEEecCc
Confidence 34456899998 889999999998766 58988655 689999999998763
No 32
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=31.34 E-value=55 Score=29.51 Aligned_cols=48 Identities=15% Similarity=0.096 Sum_probs=36.9
Q ss_pred cCeEEEeecCcEEEEEEEEEEeeccCCCCeEEEEEEEec----CCCCEEECeEEEE
Q 048256 49 PKSLKFINVGEEKSFKVIIKAKNASVTKDYVFGELIWSD----EKQHQVRSPIVVK 100 (102)
Q Consensus 49 P~~l~f~~~~~~~~f~Vt~~~~~~~~~~~~~fG~l~W~~----~~gh~VrsPiav~ 100 (102)
|+.|.+ .++.++|.|.++.+ ....+..|+.|...| .+|...|.||.|.
T Consensus 600 p~~l~l--~~~~r~~~v~vDp~--~L~~G~h~~~v~~~D~~~~~~gp~f~ipvTv~ 651 (1354)
T 3lxu_X 600 GAFLDL--SYGTRSIAVRVDPT--GLQPGVHSAVIRAYDTDCVQKGSLFEIPVTVV 651 (1354)
T ss_dssp CSCEEC--TTSCEEEEEEECGG--GCCSEEEEEEEEEEESSCTTSCCSEEEEEEEE
T ss_pred ccceee--cCCCceEEEEECCC--CCCCcceeEEEEEEEcCCcccCceEEeeEEEE
Confidence 666666 58889999999986 234567899998775 4568899999874
No 33
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=29.91 E-value=69 Score=25.11 Aligned_cols=38 Identities=5% Similarity=-0.003 Sum_probs=28.6
Q ss_pred CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEE
Q 048256 30 PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVII 67 (102)
Q Consensus 30 ~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~ 67 (102)
...|...+..|+|.+|.-.|....+....-+..++++.
T Consensus 424 ~~~~~~~i~~P~g~~v~~~p~~~~i~~~~g~~~~~~~~ 461 (506)
T 3kd4_A 424 REEVTYTVTPAEGMKLQTSTQEQVISKPFGKVTRTITP 461 (506)
T ss_dssp EEEEEEEEEECTTCEECSCCSCEEEEETTEEEEEEEEE
T ss_pred eEEEEEEEECCCCCeeecCCcCeeecCCcEEEEEEEEe
Confidence 56899999999999998889998886555444444433
No 34
>2di8_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=29.79 E-value=1e+02 Score=19.01 Aligned_cols=58 Identities=22% Similarity=0.225 Sum_probs=35.5
Q ss_pred CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEeeccCCCCeEEEEEEEecCCCCEEECeEEEEE
Q 048256 30 PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKA 101 (102)
Q Consensus 30 ~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~~~~~~~~~~fG~l~W~~~~gh~VrsPiav~~ 101 (102)
.....+.+..|.++.+.+ . .++.-+|.|+++.. . .+.|. =++.| +++ |.-.||..+..
T Consensus 41 ~g~l~v~v~gp~~~~~~v-------~-d~~dGty~v~Y~p~--~-~G~y~-I~V~~-~g~-~I~gSPF~v~v 98 (111)
T 2di8_A 41 YGGISLAVEGPSKVDIQT-------E-DLEDGTCKVSYFPT--V-PGVYI-VSTKF-ADE-HVPGSPFTVKI 98 (111)
T ss_dssp BCCEEEEEESSSCCCEEC-------C-BCTTSCEEEEECCC--S-CSEEE-EEEEE-SSC-BCTTCSEEEEE
T ss_pred CCceEEEEEcCCCceEEE-------E-ECCCCEEEEEEEeC--C-CeEEE-EEEEE-CCE-ECCCCCEEEEE
Confidence 445677777787754432 1 23345788888864 2 34433 35566 466 88889987753
No 35
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=28.49 E-value=1.1e+02 Score=19.15 Aligned_cols=51 Identities=14% Similarity=0.291 Sum_probs=40.2
Q ss_pred eEEEEEEEEEccC-CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEe
Q 048256 17 SITVTRRVKNVGS-PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAK 70 (102)
Q Consensus 17 ~~t~~RTVTNVg~-~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~ 70 (102)
.++-.=+++|..+ .-.|++.-.+|.-+. |.|..=.. +.|++....|++.+.
T Consensus 28 ~~~~~l~L~N~s~~~vaFKVKTT~p~~y~--VrP~~G~i-~P~~s~~v~V~~~~~ 79 (128)
T 1z9l_A 28 VVTTNLKLQNPSDRKVCFKVKTTAPRRYC--VRPNSGVI-DPGSIVTVSVMLQPF 79 (128)
T ss_dssp CEEEEEEEECCSSSCEEEEEEESCGGGEE--EESCEEEE-CTTCEEEEEEEECCC
T ss_pred eEEEEEEEECCCCCeEEEEEECCCCCceE--EeCCCcEE-CCCCeEEEEEEECcC
Confidence 4455567899998 888999999998765 68987544 689999999988764
No 36
>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction with GP1BA, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.42 E-value=1.1e+02 Score=18.75 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=40.8
Q ss_pred EEEccC-CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEeeccCCCCeEEEEEEEecCCCCEEECeEEEEE
Q 048256 24 VKNVGS-PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKA 101 (102)
Q Consensus 24 VTNVg~-~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~~~~~~~~~~fG~l~W~~~~gh~VrsPiav~~ 101 (102)
|.-.+. .....+.+..|.++.+.+ ...+--+|.|++... . .+.|. =++.| +|+ |.--||..+..
T Consensus 44 v~t~dag~~~l~v~v~~p~~~~~~v--------~d~~dGty~v~Y~p~--~-~G~y~-I~V~~-~g~-~I~gSPF~v~v 108 (115)
T 2eea_A 44 IVTEDAGEGGLDLAIEGPSKAEISC--------IDNKDGTCTVTYLPT--L-PGDYS-ILVKY-NDK-HIPGSPFTAKI 108 (115)
T ss_dssp EECSSCCSSCEEEEEESSSCCEECC--------BCCSSSEEEEEEECS--S-CSCEE-EEEEE-SSS-BCTTCSEEEEE
T ss_pred EEcccCCCCceEEEEECCCCceEEE--------EECCCCEEEEEEEeC--C-CeeEE-EEEEE-CCE-ECCCCCEEEEE
Confidence 344444 566788888888865422 234445899999875 2 35554 35666 466 88889987753
No 37
>2l3u_A YBBR family protein; beta strand, figure eight, figure 8, structural genomics, PS biology, protein structure initiative; NMR {Desulfitobacterium hafniense}
Probab=26.62 E-value=8.2 Score=23.76 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=19.0
Q ss_pred EEccCCceEEE--EEeCCCceE-EEEEcCeEEEe
Q 048256 25 KNVGSPGTYQA--RVKTPQGVS-VTIAPKSLKFI 55 (102)
Q Consensus 25 TNVg~~stY~a--~v~~p~gv~-V~V~P~~l~f~ 55 (102)
++.+ .++|.+ .+..|.|+. +++.|.+++.+
T Consensus 53 s~l~-~G~~~v~v~v~~P~~~~~v~i~P~~V~V~ 85 (98)
T 2l3u_A 53 TGKA-VGEHTVKIYWQLPAGIEMVSIPDVTYTLK 85 (98)
T ss_dssp SSCC-SBCCEECCCCBCSSSCEEEECCCEECCEE
T ss_pred cCCc-CceEEEeEEEECCCCcEEEEeCCCEEEEE
Confidence 3443 344544 466788886 47888877764
No 38
>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=26.37 E-value=1.2e+02 Score=18.76 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=40.5
Q ss_pred EEEccC-CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEeeccCCCCeEEEEEEEecCCCCEEECeEEEEE
Q 048256 24 VKNVGS-PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKA 101 (102)
Q Consensus 24 VTNVg~-~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~~~~~~~~~~fG~l~W~~~~gh~VrsPiav~~ 101 (102)
|.-... .....+.+..|.++.+.+ . .++--+|.|+++.. . .+.|. =++.| +|+ |.-.||..+..
T Consensus 41 v~t~dag~~~l~v~v~~p~~~~~~v-------~-d~~dGty~v~Y~p~--~-~G~y~-I~V~~-~g~-~I~gSPF~v~v 105 (119)
T 2k9u_A 41 IWTREAGAGGLSIAVEGPSKAEIAF-------E-DRKDGSCGVSYVVQ--E-PGDYE-VSIKF-NDE-HIPDSPFVVPV 105 (119)
T ss_dssp EECCSSCSEEEEEEEESSSCCEEEE-------E-CCSSSEEEEEEECC--S-SEEEE-EEEEE-TSC-BCSSCSEEEEE
T ss_pred EEECCCCCCcEEEEEeCCCCCeEEE-------E-ECCCCEEEEEEEEC--C-CceEE-EEEEE-CCE-ECCCCCEEEEE
Confidence 444344 667788888888855432 2 34446799998875 2 24433 25666 467 98899987753
No 39
>2dic_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=25.31 E-value=93 Score=18.82 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=34.6
Q ss_pred CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEeeccCCCCeEEEEEEEecCCCCEEECeEEEE
Q 048256 30 PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVK 100 (102)
Q Consensus 30 ~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~~~~~~~~~~fG~l~W~~~~gh~VrsPiav~ 100 (102)
...-.+.++.|.++.+.+ . .++--+|.|++... ..+.|. =++.| +|+ |.-.||..+.
T Consensus 41 ~g~l~v~v~gp~~~~~~v-----~---d~~dGty~v~Y~p~---~~G~y~-I~V~~-~g~-~I~gSPF~v~ 97 (105)
T 2dic_A 41 IGGLGITVEGPSESKINC-----R---DNKDGSCSAEYIPF---APGDYD-VNITY-GGA-HIPGSPFRVP 97 (105)
T ss_dssp SSCEEEEEESSSCCCCEE-----E---ECSSSCEEEEECCS---SCEEEE-EEEEE-TTE-ECTTCSEEEE
T ss_pred CCceEEEEECCCCCeEEE-----E---ECCCCeEEEEEEeC---CCeEEE-EEEEE-CCE-ECCCCCEEEE
Confidence 455677888887765433 1 23334788888754 223333 35556 456 8888998765
No 40
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*
Probab=25.25 E-value=2.1e+02 Score=22.03 Aligned_cols=61 Identities=15% Similarity=0.136 Sum_probs=36.7
Q ss_pred cceEEEecCCCeEEEEEEEEEccC-CceE-EEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEe
Q 048256 6 YPSITVPKLSGSITVTRRVKNVGS-PGTY-QARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAK 70 (102)
Q Consensus 6 yPSi~v~~~~~~~t~~RTVTNVg~-~stY-~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~ 70 (102)
-|.+++.. .++.+++=+|||-+. .-.. ++++..|.|..++. ....| +.||+.+..++++..
T Consensus 364 ~~~~~~~~-g~~~~~~~~vtn~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~g~~~t~~~~vt~~ 426 (601)
T 1w8o_A 364 IPDVALEP-GQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQG--SVEPL-MPGRQAKGQVTITVP 426 (601)
T ss_dssp CCCEEECT-TCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEE--EECCB-CTTCEEEEEEEEECC
T ss_pred CccceecC-CceeEEEEEEECCCceeccCceEEEecCCCcEEec--ccccc-CCCCceEEEEEEecC
Confidence 35555543 246778888898653 2111 33466788887766 23445 467777776666653
No 41
>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=24.90 E-value=1.2e+02 Score=18.46 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=38.0
Q ss_pred CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEeeccCCCCeEEEEEEEecCCCCEEECeEEEE
Q 048256 30 PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVK 100 (102)
Q Consensus 30 ~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~~~~~~~~~~fG~l~W~~~~gh~VrsPiav~ 100 (102)
...-+|.|..|.|-. .|..+.-.. .-.|.|+|.+. ..+.+. =++.| +|. |.-.||+-+.
T Consensus 30 ~~~l~v~v~~P~G~~---~~~~v~d~~---dGty~v~ytP~---e~G~h~-v~V~~-~g~-~I~GSPF~v~ 88 (102)
T 2dlg_A 30 SSDMSAHVTSPSGRV---TEAEIVPMG---KNSHCVRFVPQ---EMGVHT-VSVKY-RGQ-HVTGSPFQFT 88 (102)
T ss_dssp GGGCEEEEECTTSCE---EECEEEECS---SSEEEEEBCCC---TTCEEE-EEEES-SSS-BCSSCSEEEE
T ss_pred CCCEEEEEECCCCCE---eeeEEEECC---CCEEEEEEEec---CCEeEE-EEEEE-CCE-eCCCCCeEEE
Confidence 556789999999964 455555432 34699999875 233322 24444 566 8888998765
No 42
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.59 E-value=1.5e+02 Score=19.20 Aligned_cols=50 Identities=14% Similarity=0.301 Sum_probs=39.4
Q ss_pred EEEEEEEEEccC-CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEe
Q 048256 18 ITVTRRVKNVGS-PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAK 70 (102)
Q Consensus 18 ~t~~RTVTNVg~-~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~ 70 (102)
++-.=+++|..+ .-.|++.-.+|.-+. |.|..=.. +.+++....|++.+.
T Consensus 33 ~~~~l~L~N~s~~~VaFKVKTT~p~~y~--VrP~~GiI-~P~~s~~v~V~l~~~ 83 (147)
T 2cri_A 33 VTTNLKLQNPSDRKVCFKVKTTAPRRYC--VRPNSGII-DPGSIVTVSVMLQPF 83 (147)
T ss_dssp CCEEEEEECCSSSCEEEEEEESCTTSEE--EESSEEEC-CTTCEEEEEEEECCC
T ss_pred EEEEEEEECCCCCcEEEEEECCCCccEE--EcCCCcEE-CCCCeEEEEEEECCC
Confidence 334456899998 888999999998866 58987444 689999999988764
No 43
>3c0f_B Uncharacterized protein AF_1514; hot DOG fold, sulphur SAD, methylated, unknown function; HET: MLY; 1.80A {Archaeoglobus fulgidus dsm 4304}
Probab=24.30 E-value=23 Score=22.17 Aligned_cols=14 Identities=29% Similarity=0.285 Sum_probs=12.1
Q ss_pred EEEecCCCCEEECeE
Q 048256 83 LIWSDEKQHQVRSPI 97 (102)
Q Consensus 83 l~W~~~~gh~VrsPi 97 (102)
|.|.|++ ..+|||-
T Consensus 37 LaW~D~k-rg~~sP~ 50 (91)
T 3c0f_B 37 LSVHDSX-TGYRAPE 50 (91)
T ss_dssp EEEEETT-TCCEESC
T ss_pred EEEeecc-cCcCCCc
Confidence 5799999 8899985
No 44
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=22.60 E-value=72 Score=25.37 Aligned_cols=27 Identities=11% Similarity=0.395 Sum_probs=21.0
Q ss_pred EEEEEcCeEEEe-ecCcEEEEEEEEEEe
Q 048256 44 SVTIAPKSLKFI-NVGEEKSFKVIIKAK 70 (102)
Q Consensus 44 ~V~V~P~~l~f~-~~~~~~~f~Vt~~~~ 70 (102)
.+.++|..+.++ +.||.++|+|+|+..
T Consensus 80 ~~Qi~Pq~v~l~LRpG~~~~f~v~~~~~ 107 (472)
T 3t3p_B 80 VTQVSPQRIALRLRPDDSKNFSIQVRQV 107 (472)
T ss_dssp CCCEECCEEEEEECTTCEEEEEEEEECC
T ss_pred cccccCcEEEEEecCCCcEEEEEEeecC
Confidence 467888876653 689999999999853
No 45
>2eec_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.22 E-value=1.5e+02 Score=18.60 Aligned_cols=58 Identities=24% Similarity=0.435 Sum_probs=36.2
Q ss_pred CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEeeccCCCCeEEEEEEEecCCCCEEECeEEEEE
Q 048256 30 PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKA 101 (102)
Q Consensus 30 ~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~~~~~~~~~~fG~l~W~~~~gh~VrsPiav~~ 101 (102)
....++.+..|.+..+.+. ..++- |.|+++.. ..+.| .=++.|.+.+ |.--||..+..
T Consensus 51 ~~~l~v~i~gp~~~~~~~~-------d~~dG--y~V~Y~P~---~~G~y-~I~V~~~g~~-hI~gSPF~v~v 108 (125)
T 2eec_A 51 PGTLSVTIEGPSKVKMDCQ-------ETPEG--YKVMYTPM---APGNY-LISVKYGGPN-HIVGSPFKAKV 108 (125)
T ss_dssp SCCEEEEEESSSCCCCEEE-------ECSSS--EEEEECCS---SCEEE-EEEEEESSSC-BCTTCSEEEEE
T ss_pred CCcEEEEEECCCCCcceeE-------ECCCC--EEEEEEcC---CCeEE-EEEEEECCcc-cCCCCCeEEEE
Confidence 5667888888887655431 12222 88888764 12333 3456675437 98899987753
No 46
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=21.92 E-value=1.6e+02 Score=18.59 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=38.4
Q ss_pred EEEEEEEccC-CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEe
Q 048256 20 VTRRVKNVGS-PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAK 70 (102)
Q Consensus 20 ~~RTVTNVg~-~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~ 70 (102)
-.=+++|.++ .-.|+++-.+|.-+. |.|..=.. +.|++....|++.+.
T Consensus 29 ~~l~l~N~s~~~vaFKVKTT~p~~y~--VrP~~Gii-~P~~s~~v~V~~q~~ 77 (126)
T 1msp_A 29 YHIKITNAGGRRIGWAIKTTNMRRLS--VDPPCGVL-DPKEKVLMAVSCDTF 77 (126)
T ss_dssp EEEEEEECSSSCEEEEEEESCTTTEE--EESCEEEE-CTTCEEEEEEEECCC
T ss_pred EEEEEECCCCCeEEEEEEcCCCCcEE--EECCCeEE-CCCCEEEEEEEecCC
Confidence 3446899998 888999999998865 68887666 589998888888763
No 47
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=21.70 E-value=76 Score=25.52 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=21.7
Q ss_pred EEEEEcCeEEEe-ecCcEEEEEEEEEEe
Q 048256 44 SVTIAPKSLKFI-NVGEEKSFKVIIKAK 70 (102)
Q Consensus 44 ~V~V~P~~l~f~-~~~~~~~f~Vt~~~~ 70 (102)
.+.++|.++.++ +.||.++|+|+|+..
T Consensus 101 ~~Qi~PQ~v~l~LRpG~~~~f~v~~~~~ 128 (503)
T 3v4v_B 101 ATQLAPQRVRVTLRPGEPQQLQVRFLRA 128 (503)
T ss_dssp CBCEECCEEEEECBTTBCEEEEEEEECC
T ss_pred cceecCceEEEEecCCCcEEEEEEEEcc
Confidence 367899877764 679999999999853
No 48
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=20.86 E-value=65 Score=20.29 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=17.0
Q ss_pred EccC-CceEEEEE--eCCCceEEEEEcCeEEEeecCcEEEEEE
Q 048256 26 NVGS-PGTYQARV--KTPQGVSVTIAPKSLKFINVGEEKSFKV 65 (102)
Q Consensus 26 NVg~-~stY~a~v--~~p~gv~V~V~P~~l~f~~~~~~~~f~V 65 (102)
+-|. ..++++.+ .+- +. .-.|+.|++ +.|++..|.+
T Consensus 11 ~~~~~~~~~~V~v~~~~~-~~--~F~p~~i~v-~~G~~V~~~~ 49 (139)
T 2aan_A 11 GGGSGSGPVTIEIGSKGE-EL--AFDKTELTV-SAGQTVTIRF 49 (139)
T ss_dssp ------CCEEEEEEBCTT-SS--SBSCSEEEE-CTTCEEEEEE
T ss_pred CCCCCCcCEEEEEEecCC-cc--EEcCCeEEE-CCCCEEEEEE
Confidence 3344 66777777 322 22 234667776 3566555543
No 49
>3obl_A Lectin; novel beta barrel fold, high mannose glycan binding protein; HET: CXS; 1.20A {Planktothrix agardhii} PDB: 3s5v_A 3s5x_A* 3s60_A
Probab=20.69 E-value=1.9e+02 Score=18.99 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=35.8
Q ss_pred CCCcceEEEecCCCeEEEEEEEEEccC-CceEEEEEeCCCceEEE
Q 048256 3 NFNYPSITVPKLSGSITVTRRVKNVGS-PGTYQARVKTPQGVSVT 46 (102)
Q Consensus 3 dLNyPSi~v~~~~~~~t~~RTVTNVg~-~stY~a~v~~p~gv~V~ 46 (102)
+-|-|+|.+....+-.+++-|.|--|+ +--|+++...+.-..|+
T Consensus 29 nQnVva~~i~s~D~Gktl~Gtmty~GEGPIGfr~t~~g~n~Y~Ve 73 (132)
T 3obl_A 29 DQNVVAINVESGDDGQTLNGTMTYAGEGPIGFRATLLGNNSYEVE 73 (132)
T ss_dssp SCCEEEEEEECSSTTSEEEEEEEETTSCCEEEEEEEEETTEEEEE
T ss_pred CCcEEeEEeEEcCCCceeEeEEEecCCCceEEeeEeccCcceEEE
Confidence 367888888887778899999999999 88899988777665544
Done!