BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048257
(510 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 113/329 (34%), Positives = 182/329 (55%), Gaps = 19/329 (5%)
Query: 24 LGVNWGTVASHQLPPKTTVKLLKDNGILKVKLFDADNTILDALAGTDIEVMLAVSNQELK 83
+GV +G ++ P + L K + I +++++D + +L+AL G++IE++L V N +L+
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 84 TMTDFDKAKEWVKANVTKYTNKGGVNIKFVAVGNEPFLKAYNGSHINTTF--PALKNIQN 141
++T+ AK WV+ NV + + V +++AVGNE G+ F PA++NI +
Sbjct: 62 SLTNPSNAKSWVQKNVRGFWS--SVRFRYIAVGNE-ISPVNRGTAWLAQFVLPAMRNIHD 118
Query: 142 ALNDAGVGDTIKATVPFNADVYDSPDKNPY-PSAGKFRTDIFATMKEIVDFLAENKAPFI 200
A+ AG+ D IK + + + N Y PSAG FR D+ + + I+ FL+ ++P +
Sbjct: 119 AIRSAGLQDQIKVSTAIDLTLVG----NSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLL 174
Query: 201 VNIYPFLSLYGN-DDFPVDYAFFDGGKSIV-DSVTGNKYTDVFDANYDTCVSALKAAGHG 258
NIYP+ + GN D + YA F +V D G Y ++FDA D SAL+ A G
Sbjct: 175 ANIYPYFTYAGNPRDISLPYALFTSPSVVVWDGQRG--YKNLFDATLDALYSALERASGG 232
Query: 259 DMPVVVGEIGWPTDGDKMANTANAFRYYSGLLPKLAADKGTPLRPGSYIEVYMFSLFDED 318
+ VVV E GWP+ G A N Y S L+ + +GTP RP IE Y+F++FDE+
Sbjct: 233 SLEVVVSESGWPSAGAFAATFDNGRTYLSNLIQHV--KRGTPKRPKRAIETYLFAMFDEN 290
Query: 319 SKSIDPGNFEKHWGIFTYDGQPKFPMDFS 347
K + EKH+G+F + K+ ++FS
Sbjct: 291 KKQPE---VEKHFGLFFPNKWQKYNLNFS 316
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 175 bits (444), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 105/326 (32%), Positives = 177/326 (54%), Gaps = 15/326 (4%)
Query: 24 LGVNWGTVASHQLPPKTTVKLLKDNGILKVKLFDADNTILDALAGTDIEVMLAVSNQELK 83
+GV +G +A++ + +KL N I K++++ + +AL G++IE++L V NQ+L+
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 84 TMTDFDKAKEWVKANVTKYTNKGGVNIKFVAVGNEPFLKAYNGSHINTTFPALKNIQNAL 143
+ + A WV+ N+ + V K++AVGNE +G + PA++NI NAL
Sbjct: 63 ALANPSNANGWVQDNIRNHF--PDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNAL 120
Query: 144 NDAGVGDTIKATVPFNADVYDSPDKNPYPSAGK-FRTDIFATMKEIVDFLAENKAPFIVN 202
+ AG+ + IK + Y N YP FR + + + I+ FLA + P + N
Sbjct: 121 SSAGLQNQIKVST----STYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLAN 176
Query: 203 IYPFLSLYGNDD-FPVDYAFFDGGKSIVDSVTGNKYTDVFDANYDTCVSALKAAGHGDMP 261
IYP+ N + P+ YA F+ + + TG Y ++FDA D+ A + G ++
Sbjct: 177 IYPYFGHIDNTNAVPLSYALFNQQRR---NDTG--YQNLFDALVDSMYFATEKLGGQNIE 231
Query: 262 VVVGEIGWPTDGDKMANTANAFRYYSGLLPKLAADKGTPLRPGSYIEVYMFSLFDEDSKS 321
++V E GWP++G A NA YY+ L+ + GTP +PG IE Y+F++FDE+ K
Sbjct: 232 IIVSESGWPSEGHPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKK 291
Query: 322 IDPGNFEKHWGIFTYDGQPKFPMDFS 347
+ EKH+G+F D +PK+ ++F+
Sbjct: 292 GEAS--EKHFGLFNPDQRPKYQLNFN 315
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/326 (31%), Positives = 176/326 (53%), Gaps = 15/326 (4%)
Query: 24 LGVNWGTVASHQLPPKTTVKLLKDNGILKVKLFDADNTILDALAGTDIEVMLAVSNQELK 83
+GV +G +A++ + +KL N I K++++ + +AL G++IE++L V NQ+L+
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 84 TMTDFDKAKEWVKANVTKYTNKGGVNIKFVAVGNEPFLKAYNGSHINTTFPALKNIQNAL 143
+ + A WV+ N+ + V K++AVGNE +G + PA++NI NAL
Sbjct: 63 ALANPSNANGWVQDNIRNHF--PDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNAL 120
Query: 144 NDAGVGDTIKATVPFNADVYDSPDKNPYPSAGK-FRTDIFATMKEIVDFLAENKAPFIVN 202
+ AG+ + IK + Y N YP FR + + + I+ FLA + P + N
Sbjct: 121 SSAGLQNQIKVST----STYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLAN 176
Query: 203 IYPFLSLYGNDD-FPVDYAFFDGGKSIVDSVTGNKYTDVFDANYDTCVSALKAAGHGDMP 261
IYP+ N + P+ YA F+ + + TG Y ++FDA D+ A + G ++
Sbjct: 177 IYPYFGHIDNTNAVPLSYALFNQQRR---NDTG--YQNLFDALVDSMYFATEKLGGQNIE 231
Query: 262 VVVGEIGWPTDGDKMANTANAFRYYSGLLPKLAADKGTPLRPGSYIEVYMFSLFDEDSKS 321
++V GWP++G A NA YY+ L+ + GTP +PG IE Y+F++FDE+ K
Sbjct: 232 IIVSASGWPSEGHPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKK 291
Query: 322 IDPGNFEKHWGIFTYDGQPKFPMDFS 347
+ EKH+G+F D +PK+ ++F+
Sbjct: 292 GEAS--EKHFGLFNPDQRPKYQLNFN 315
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 111/327 (33%), Positives = 179/327 (54%), Gaps = 19/327 (5%)
Query: 24 LGVNWGTVASHQLPPKTTVKLLKDNGILKVKLFDADNTILDALAGTDIEVMLAVSNQELK 83
+GV +G + ++ PP V L K N I +++L+D + L AL ++I+V+L V +++
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 84 TM-TDFDKAKEWVKANVTKYTNKGGVNIKFVAVGNEPFLKAYNGSHINTTFPALKNIQNA 142
++ ++ A +W++ NV Y V+ +++AVGNE + +I PA++NI NA
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPS--VSFRYIAVGNELIPGSDLAQYI---LPAMRNIYNA 115
Query: 143 LNDAGVGDTIKATVPFNADVYDSPDKNPYPSAGKFRTDIFATMKEIVDFLAENKAPFIVN 202
L+ AG+ + IK + + V + PSAG F + A + IV FLA N AP +VN
Sbjct: 116 LSSAGLQNQIKVSTAVDTGVLGTSYP---PSAGAFSSAAQAYLSPIVQFLASNGAPLLVN 172
Query: 203 IYPFLSLYGND-DFPVDYAFFDGGKSIVDSVTGN-KYTDVFDANYDTCVSALKAAGHGDM 260
+YP+ S GN + YA F +V G Y ++FDA D +AL+ G ++
Sbjct: 173 VYPYFSYTGNPGQISLPYALFTASGVVVQD--GRFSYQNLFDAIVDAVFAALERVGGANV 230
Query: 261 PVVVGEIGWPT-DGDKMANTANAFRYYSGLLPKLAADKGTPLRPGSYIEVYMFSLFDEDS 319
VVV E GWP+ G A+T+NA Y L+ + GTP RPG IE Y+F +F+E+
Sbjct: 231 AVVVSESGWPSAGGGAEASTSNAQTYNQNLIRHVGG--GTPRRPGKEIEAYIFEMFNENQ 288
Query: 320 KSIDPGNFEKHWGIFTYDGQPKFPMDF 346
K+ G E+++G+F + QP + + F
Sbjct: 289 KA---GGIEQNFGLFYPNKQPVYQISF 312
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 111/328 (33%), Positives = 166/328 (50%), Gaps = 27/328 (8%)
Query: 24 LGVNWGTVASHQLPPKTTVKLLKDNGILKVKLFDADNTILDALAGTDIEVMLAVSNQELK 83
+GV +G A++ T V + K NGI ++L+ + L A+ GT I V++ N L
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 84 TMTDFDKAKE-WVKANVTKYTNKGGVNIKFVAVGNEPFLKAYNGSHINTTFPALKNIQNA 142
+ A WVK+N+ Y V+ ++V VGNE G PA+KN+ A
Sbjct: 61 NLAASPAAAASWVKSNIQAYPK---VSFRYVCVGNE-----VAGGATRNLVPAMKNVHGA 112
Query: 143 LNDAGVGDTIKATVPFNADVYD--SPDKNPYPSAGKFRTDIFATMKEIVDFLAENKAPFI 200
L AG+G IK T + + SP PSAG F + A M +V FLA AP +
Sbjct: 113 LVAAGLGH-IKVTTSVSQAILGVFSP-----PSAGSFTGEAAAFMGPVVQFLARTNAPLM 166
Query: 201 VNIYPFLSL-YGNDDFPVDYAFFDGGKSIV-DSVTGNKYTDVFDANYDTCVSALKAAGHG 258
NIYP+L+ Y + YA F+ ++V D G Y ++FD D +A+ G
Sbjct: 167 ANIYPYLAWAYNPSAMDMGYALFNASGTVVRDGAYG--YQNLFDTTVDAFYTAMGKHGGS 224
Query: 259 DMPVVVGEIGWPTDGDKMANTANAFRYYSGLLPKLAADKGTPLRPGSYIEVYMFSLFDED 318
+ +VV E GWP+ G A ANA Y L+ + +GTP PG+ IE Y+F++F+E+
Sbjct: 225 SVKLVVSESGWPSGGGTAATPANARFYNQHLINHVG--RGTPRHPGA-IETYIFAMFNEN 281
Query: 319 SKSIDPGNFEKHWGIFTYDGQPKFPMDF 346
K D G E++WG+F + Q +P++F
Sbjct: 282 QK--DSG-VEQNWGLFYPNMQHVYPINF 306
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 165/326 (50%), Gaps = 23/326 (7%)
Query: 24 LGVNWGTVASHQLPPKT-TVKLLKDNGILKVKLFDADNTILDALAGTDIEVMLAVSNQEL 82
+GV +G + ++ LP ++ V+L + GI ++++ AD L AL + I ++L + N +L
Sbjct: 1 IGVCYGVIGNN-LPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQL 59
Query: 83 KTMT-DFDKAKEWVKANVTKYTNKGGVNIKFVAVGNEPFLKAYNGSHINTTFPALKNIQN 141
+ A WV+ NV Y VNIK++A GNE G + PA++N+ N
Sbjct: 60 ANIAASTSNAASWVQNNVRPY--YPAVNIKYIAAGNE-----VQGGATQSILPAMRNL-N 111
Query: 142 ALNDAGVGDTIKATVPFNADVYDSPDKNPYPSAGKFRTDIFATMKEIVDFLAENKAPFIV 201
A A IK + +D + PSAG F+ A M ++ LA AP +
Sbjct: 112 AALSAAGLGAIKVSTSIR---FDEVANSFPPSAGVFKN---AYMTDVARLLASTGAPLLA 165
Query: 202 NIYPFLSLYGN-DDFPVDYAFFDGGKSIVDSVTGNKYTDVFDANYDTCVSALKAAGHGDM 260
N+YP+ + N ++YA F G ++ D G YT +FDA D +AL+ AG +
Sbjct: 166 NVYPYFAYRDNPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAV 225
Query: 261 PVVVGEIGWPTDGDKMANTANAFRYYSGLLPKLAADKGTPLRPGSYIEVYMFSLFDEDSK 320
VVV E GWP+ G A+ NA Y GL+ + GTP + + +E Y+F++F+E+ K
Sbjct: 226 KVVVSESGWPSAGGFAASAGNARTYNQGLINHVGG--GTPKKREA-LETYIFAMFNENQK 282
Query: 321 SIDPGNFEKHWGIFTYDGQPKFPMDF 346
+ D E+ +G+F D P + + F
Sbjct: 283 TGDA--TERSFGLFNPDKSPAYNIQF 306
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
Length = 101
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 367 KWCTVNPDATDTSKLAEKMQFACNKS-DCTSLGFGSSCNKLDG-NGKVSYAFNMYYQMNN 424
WC P +D +L + +AC++ DC + G +C + + +Y N+YYQ
Sbjct: 12 SWCVPKPGVSD-DQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAG 70
Query: 425 QDDRACDFQGLGKVTTENISQGTCNF 450
++ CDF +T N S G CNF
Sbjct: 71 RNSWNCDFSQTATLTNTNPSYGACNF 96
>pdb|3CAI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rv3778c
Protein
pdb|3CAI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Rv3778c
Protein
Length = 406
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 32 ASHQLPPKTTVKLLKDNGILKVKLFDADNTILDALAGTDIEVMLAVSNQELKTMTDFDK 90
A H++P V+ L DNGIL + + + +LD L D+ + V TM + D+
Sbjct: 341 AVHKVPADRVVQRLADNGILAIA--NTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQ 397
>pdb|3NR9|A Chain A, Structure Of Human Cdc2-Like Kinase 2 (Clk2)
pdb|3NR9|B Chain B, Structure Of Human Cdc2-Like Kinase 2 (Clk2)
pdb|3NR9|C Chain C, Structure Of Human Cdc2-Like Kinase 2 (Clk2)
Length = 368
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 4/121 (3%)
Query: 170 PYPSAGKFRTDIFATMKEIVDFLAENKAPFIVNIYPFLSLYGNDDFPVDYAFFDGGKSIV 229
PYP + R F + + V FL +NK ++ P L+ N D+ + Y
Sbjct: 133 PYP-IHQVRHMAFQ-LCQAVKFLHDNKLTH-TDLKPENILFVNSDYELTYNLEKKRDERS 189
Query: 230 DSVTGNKYTDVFDANYD-TCVSALKAAGHGDMPVVVGEIGWPTDGDKMANTANAFRYYSG 288
T + D A +D S + + H P V+ E+GW D + F YY G
Sbjct: 190 VKSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCIIFEYYVG 249
Query: 289 L 289
Sbjct: 250 F 250
>pdb|4EXJ|A Chain A, Crystal Structure Of Glutathione S-Transferase Like
Protein Lelg_03239 (Target Efi-501752) From Lodderomyces
Elongisporus
pdb|4EXJ|B Chain B, Crystal Structure Of Glutathione S-Transferase Like
Protein Lelg_03239 (Target Efi-501752) From Lodderomyces
Elongisporus
Length = 238
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 22/80 (27%)
Query: 256 GHGDMPVVVGEI----------GWPT-----DGDKMANTANAFRYYSGLLPKLAADKGTP 300
G+G P+V+G++ WPT D N A G++P L DKGTP
Sbjct: 12 GNGRKPLVLGKLLNAPIKVHMFHWPTKDIQEDWYLKLNPA-------GIVPTLVDDKGTP 64
Query: 301 LRPGSYIEVYMFSLFDEDSK 320
+ + I +Y+ +D++ K
Sbjct: 65 ITESNNILLYIADTYDKEHK 84
>pdb|3FJO|A Chain A, Structure Of Chimeric Yh Cpr
Length = 637
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 175 GKFRTDIFATMKEIVDFLAENKAPFIVNIYPFLSLYGNDDFP 216
KF ++ E DF + N P IV+I F+S YG DFP
Sbjct: 65 AKFNLNVMCADVENYDFESLNDVPVIVSI--FISTYGEGDFP 104
>pdb|3UYI|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of
A Novel Akr Subfamily With Unique Conformational Changes
During Nadph Binding
Length = 337
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 16/87 (18%)
Query: 6 LFLRIILFVGVLGCRVNGLGVNWGTVASHQ------LPPKTTVKLLKDN-GILKVKLFD- 57
++ RI GC L + W HQ +P T +K L +N G LKVKL
Sbjct: 245 IYYRIEALSQKHGCTPVQLALAW---VLHQGEDVVPIPGTTKIKNLHNNVGALKVKLTKE 301
Query: 58 -----ADNTILDALAGTDIEVMLAVSN 79
+D LD +AG I ++AV+N
Sbjct: 302 DLKEISDAVPLDEVAGESIHEVIAVTN 328
>pdb|3V0T|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of
A Novel Akr Subfamily With Unique Conformational Changes
During Nadph Binding
Length = 337
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 16/87 (18%)
Query: 6 LFLRIILFVGVLGCRVNGLGVNWGTVASHQ------LPPKTTVKLLKDN-GILKVKLFD- 57
++ RI GC L + W HQ +P T +K L +N G LKVKL
Sbjct: 244 IYYRIEALSQKHGCTPVQLALAW---VLHQGEDVVPIPGTTKIKNLHNNVGALKVKLTKE 300
Query: 58 -----ADNTILDALAGTDIEVMLAVSN 79
+D LD +AG I ++AV+N
Sbjct: 301 DLKEISDAVPLDEVAGESIHEVIAVTN 327
>pdb|3V0U|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of
A Novel Akr Subfamily With Unique Conformational Changes
During Nadph Binding
Length = 338
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 16/87 (18%)
Query: 6 LFLRIILFVGVLGCRVNGLGVNWGTVASHQ------LPPKTTVKLLKDN-GILKVKLFD- 57
++ RI GC L + W HQ +P T +K L +N G LKVKL
Sbjct: 245 IYYRIEALSQKHGCTPVQLALAW---VLHQGEDVVPIPGTTKIKNLHNNVGALKVKLTKE 301
Query: 58 -----ADNTILDALAGTDIEVMLAVSN 79
+D LD +AG I ++AV+N
Sbjct: 302 DLKEISDAVPLDEVAGESIHEVIAVTN 328
>pdb|2BPO|A Chain A, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g,
Y75f, K78a.
pdb|2BPO|B Chain B, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g,
Y75f, K78a
Length = 682
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 175 GKFRTDIFATMKEIVDFLAENKAPFIVNIYPFLSLYGNDDFP 216
KF ++ E DF + N P IV+I F+S YG DFP
Sbjct: 76 AKFNLNVMCADVENYDFESLNDVPVIVSI--FISTYGEGDFP 115
>pdb|2BF4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BF4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BN4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
pdb|2BN4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
Length = 682
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 175 GKFRTDIFATMKEIVDFLAENKAPFIVNIYPFLSLYGNDDFP 216
KF ++ E DF + N P IV+I F+S YG DFP
Sbjct: 76 AKFNLNVMCADVENYDFESLNDVPVIVSI--FISTYGEGDFP 115
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 51 LKVKLFDADNTILDALAGTDIEVMLAVSNQELKTMTDFDKAKEWVKANVTKYTNKGGVNI 110
L+V LFD D T++D + DI + L + +EL +E+ NVTKY GGV
Sbjct: 3 LRVILFDLDGTLID--SAKDIALALEKTLKELGL-------EEYYPDNVTKYIG-GGVRA 52
Query: 111 KFVAVGNEPFLKAY 124
V + F + Y
Sbjct: 53 LLEKVLKDKFREEY 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,280,100
Number of Sequences: 62578
Number of extensions: 711151
Number of successful extensions: 1748
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1710
Number of HSP's gapped (non-prelim): 20
length of query: 510
length of database: 14,973,337
effective HSP length: 103
effective length of query: 407
effective length of database: 8,527,803
effective search space: 3470815821
effective search space used: 3470815821
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)