Query 048257
Match_columns 510
No_of_seqs 297 out of 1714
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:49:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 7.4E-86 1.6E-90 673.9 20.9 308 24-346 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 1.2E-41 2.7E-46 331.6 22.3 252 20-338 42-305 (305)
3 smart00768 X8 Possibly involve 99.9 3.4E-26 7.5E-31 191.9 7.6 83 367-450 1-85 (85)
4 PF07983 X8: X8 domain; Inter 99.8 1E-21 2.2E-26 162.1 6.0 70 367-437 1-78 (78)
5 PF03198 Glyco_hydro_72: Gluca 99.0 5.1E-09 1.1E-13 106.7 15.5 126 24-155 30-180 (314)
6 PF07745 Glyco_hydro_53: Glyco 98.9 1.2E-07 2.5E-12 98.6 20.1 246 38-344 26-329 (332)
7 COG3867 Arabinogalactan endo-1 98.2 1.5E-05 3.3E-10 80.4 12.4 206 38-295 65-328 (403)
8 PRK10150 beta-D-glucuronidase; 97.6 0.0069 1.5E-07 68.1 21.7 240 41-346 318-587 (604)
9 PF00150 Cellulase: Cellulase 97.6 0.0034 7.4E-08 62.3 16.5 131 22-155 9-171 (281)
10 smart00633 Glyco_10 Glycosyl h 97.3 0.011 2.5E-07 59.1 16.2 81 246-343 169-250 (254)
11 PF11790 Glyco_hydro_cc: Glyco 97.0 0.023 4.9E-07 56.7 15.5 168 108-339 64-231 (239)
12 PF02836 Glyco_hydro_2_C: Glyc 96.8 0.15 3.1E-06 52.2 19.2 95 23-119 17-132 (298)
13 TIGR03356 BGL beta-galactosida 93.9 7.3 0.00016 42.3 20.4 78 39-120 57-163 (427)
14 PLN02814 beta-glucosidase 82.5 87 0.0019 34.9 19.5 78 39-120 80-187 (504)
15 PF02449 Glyco_hydro_42: Beta- 76.2 6.6 0.00014 41.5 6.8 81 39-121 13-140 (374)
16 cd02875 GH18_chitobiase Chitob 76.1 14 0.0003 39.1 9.1 96 49-149 55-151 (358)
17 PF00232 Glyco_hydro_1: Glycos 69.0 1.6 3.6E-05 47.5 0.2 278 39-338 61-431 (455)
18 COG3934 Endo-beta-mannanase [C 65.7 33 0.00072 37.9 9.0 187 92-344 123-312 (587)
19 PF01229 Glyco_hydro_39: Glyco 65.3 1.8E+02 0.0039 32.0 15.2 246 44-341 48-350 (486)
20 PF00925 GTP_cyclohydro2: GTP 64.5 7.9 0.00017 36.6 3.8 38 41-78 131-168 (169)
21 COG4782 Uncharacterized protei 57.5 23 0.00051 37.7 6.1 57 237-296 125-187 (377)
22 TIGR00505 ribA GTP cyclohydrol 56.7 16 0.00035 35.3 4.5 33 42-74 131-163 (191)
23 smart00481 POLIIIAc DNA polyme 55.9 35 0.00076 26.5 5.6 44 36-79 15-63 (67)
24 PRK00393 ribA GTP cyclohydrola 55.6 17 0.00037 35.3 4.5 36 42-77 134-169 (197)
25 PRK09936 hypothetical protein; 54.8 88 0.0019 32.4 9.5 57 24-80 22-95 (296)
26 PRK12485 bifunctional 3,4-dihy 50.1 19 0.00041 38.5 4.1 34 41-75 330-363 (369)
27 TIGR01579 MiaB-like-C MiaB-lik 48.4 1E+02 0.0022 33.1 9.4 60 128-209 271-330 (414)
28 cd00641 GTP_cyclohydro2 GTP cy 45.7 30 0.00065 33.4 4.4 36 42-77 133-168 (193)
29 PRK14019 bifunctional 3,4-dihy 45.5 25 0.00054 37.6 4.1 35 42-77 328-362 (367)
30 PRK14334 (dimethylallyl)adenos 44.7 1.7E+02 0.0038 31.7 10.6 59 127-207 269-327 (440)
31 PF07218 RAP1: Rhoptry-associa 43.1 34 0.00073 38.3 4.7 6 494-499 182-187 (782)
32 PF03662 Glyco_hydro_79n: Glyc 42.5 31 0.00068 36.1 4.2 84 62-146 113-203 (319)
33 PLN03059 beta-galactosidase; P 42.1 4.3E+02 0.0093 31.5 13.6 115 40-158 63-222 (840)
34 PRK09314 bifunctional 3,4-dihy 41.7 33 0.00071 36.3 4.3 34 41-74 300-334 (339)
35 PLN02831 Bifunctional GTP cycl 40.0 37 0.0008 37.3 4.5 38 41-78 372-409 (450)
36 PRK09318 bifunctional 3,4-dihy 39.6 38 0.00083 36.4 4.5 38 41-78 319-356 (387)
37 PRK08815 GTP cyclohydrolase; P 39.3 39 0.00084 36.3 4.4 37 42-78 305-341 (375)
38 PRK09319 bifunctional 3,4-dihy 39.1 38 0.00083 38.0 4.5 38 41-78 342-379 (555)
39 PRK09311 bifunctional 3,4-dihy 38.8 40 0.00087 36.5 4.5 38 41-78 338-375 (402)
40 PRK14326 (dimethylallyl)adenos 38.7 2.6E+02 0.0057 31.0 11.0 58 127-206 289-346 (502)
41 PF04909 Amidohydro_2: Amidohy 37.1 84 0.0018 30.5 6.2 91 133-270 84-175 (273)
42 cd04743 NPD_PKS 2-Nitropropane 36.9 2E+02 0.0044 30.2 9.2 79 22-119 56-134 (320)
43 PRK13511 6-phospho-beta-galact 36.4 1.5E+02 0.0033 32.6 8.6 77 39-120 57-162 (469)
44 PLN02998 beta-glucosidase 35.8 93 0.002 34.6 6.9 78 39-120 85-192 (497)
45 PF06117 DUF957: Enterobacteri 34.4 69 0.0015 25.7 3.9 42 91-146 13-55 (65)
46 PRK14338 (dimethylallyl)adenos 34.3 3E+02 0.0065 30.1 10.5 60 127-208 287-346 (459)
47 PRK09525 lacZ beta-D-galactosi 33.8 3.6E+02 0.0079 32.9 11.8 94 24-119 353-463 (1027)
48 PRK14328 (dimethylallyl)adenos 33.3 3.1E+02 0.0066 29.8 10.3 76 111-208 258-338 (439)
49 COG0621 MiaB 2-methylthioadeni 32.7 2E+02 0.0044 31.5 8.7 131 23-208 195-336 (437)
50 PRK14336 (dimethylallyl)adenos 32.6 2.7E+02 0.0059 30.0 9.7 60 127-208 256-315 (418)
51 PF14488 DUF4434: Domain of un 32.4 76 0.0016 29.9 4.8 41 40-80 24-88 (166)
52 TIGR01125 MiaB-like tRNA modif 31.9 3.1E+02 0.0067 29.6 10.1 60 128-209 268-327 (430)
53 PLN02849 beta-glucosidase 31.5 1.2E+02 0.0027 33.7 7.0 78 39-120 82-189 (503)
54 COG4213 XylF ABC-type xylose t 30.5 1.2E+02 0.0025 32.0 6.0 73 61-155 176-248 (341)
55 PRK14327 (dimethylallyl)adenos 29.7 5.8E+02 0.013 28.5 11.8 60 127-208 344-403 (509)
56 PF02055 Glyco_hydro_30: O-Gly 29.4 7.3E+02 0.016 27.7 12.5 62 93-155 208-277 (496)
57 PRK07198 hypothetical protein; 29.3 45 0.00098 36.0 2.9 37 42-78 338-375 (418)
58 PRK10340 ebgA cryptic beta-D-g 29.3 3.8E+02 0.0083 32.6 11.0 95 24-120 337-451 (1021)
59 PF05990 DUF900: Alpha/beta hy 28.5 1E+02 0.0023 30.4 5.2 56 237-295 27-88 (233)
60 KOG0078 GTP-binding protein SE 27.9 1.2E+02 0.0026 29.9 5.4 81 21-121 42-129 (207)
61 TIGR03632 bact_S11 30S ribosom 27.7 1.2E+02 0.0027 26.5 4.9 37 39-75 50-91 (108)
62 PF13756 Stimulus_sens_1: Stim 27.5 42 0.00091 29.6 2.0 27 37-63 2-31 (112)
63 PRK14330 (dimethylallyl)adenos 27.1 5.2E+02 0.011 27.9 10.8 59 128-208 273-331 (434)
64 cd02872 GH18_chitolectin_chito 26.8 3.1E+02 0.0068 28.5 8.8 77 68-147 68-151 (362)
65 COG0807 RibA GTP cyclohydrolas 26.6 1.1E+02 0.0024 29.8 4.9 39 42-80 133-171 (193)
66 KOG0626 Beta-glucosidase, lact 26.5 1.3E+02 0.0027 33.8 5.8 73 255-337 403-486 (524)
67 PF14587 Glyco_hydr_30_2: O-Gl 25.3 3.9E+02 0.0084 28.9 9.0 95 61-159 108-227 (384)
68 COG1433 Uncharacterized conser 24.4 1.5E+02 0.0031 26.8 4.9 39 40-78 56-94 (121)
69 COG2159 Predicted metal-depend 24.3 3.7E+02 0.0081 27.6 8.6 94 134-273 113-208 (293)
70 PRK14337 (dimethylallyl)adenos 24.2 5.6E+02 0.012 27.9 10.4 59 127-207 281-339 (446)
71 TIGR00510 lipA lipoate synthas 23.9 6.8E+02 0.015 26.0 10.4 134 41-209 99-247 (302)
72 TIGR03628 arch_S11P archaeal r 23.7 1.5E+02 0.0033 26.4 4.8 37 39-75 53-102 (114)
73 PRK14332 (dimethylallyl)adenos 23.6 9.8E+02 0.021 26.1 12.3 78 110-209 261-343 (449)
74 TIGR01233 lacG 6-phospho-beta- 23.5 2.3E+02 0.005 31.2 7.2 77 39-120 56-161 (467)
75 PRK14339 (dimethylallyl)adenos 23.1 7.4E+02 0.016 26.7 11.0 58 128-207 263-320 (420)
76 PLN00196 alpha-amylase; Provis 21.8 3.3E+02 0.0072 29.7 7.9 57 24-80 29-116 (428)
77 PRK15014 6-phospho-beta-glucos 21.2 1.3E+02 0.0029 33.2 4.8 73 259-339 368-448 (477)
78 PRK09593 arb 6-phospho-beta-gl 20.9 2.1E+02 0.0045 31.7 6.3 78 39-120 76-184 (478)
79 PF00331 Glyco_hydro_10: Glyco 20.7 1.2E+02 0.0027 31.5 4.2 220 61-343 63-312 (320)
80 PRK09607 rps11p 30S ribosomal 20.3 1.9E+02 0.0042 26.5 4.8 37 39-75 60-109 (132)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=7.4e-86 Score=673.92 Aligned_cols=308 Identities=44% Similarity=0.782 Sum_probs=250.8
Q ss_pred eeEEecCCCCCCCChHHHHHHHHhCCCCEEEEccCChHHHHHhhcCCCEEEEEeccchhccc-CCHHHHHHHHHhhhccc
Q 048257 24 LGVNWGTVASHQLPPKTTVKLLKDNGILKVKLFDADNTILDALAGTDIEVMLAVSNQELKTM-TDFDKAKEWVKANVTKY 102 (510)
Q Consensus 24 ~GvnYg~~~~n~ps~~~vv~llk~~~i~~VRlY~~d~~vL~A~a~tgi~V~vgV~n~~i~~~-~~~~~A~~Wv~~nv~~y 102 (510)
||||||+.++|+|+|.+|++|||+++|++|||||+|+++|+||+++||+|+|||+|+++.++ +++..|..|+++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999 88899999999999999
Q ss_pred cCCCCceEEEEEecCccccccCCCCChhhHHHHHHHHHHHHHhcCCCCceEEecccccccccCCCCCCCCCCccccchhH
Q 048257 103 TNKGGVNIKFVAVGNEPFLKAYNGSHINTTFPALKNIQNALNDAGVGDTIKATVPFNADVYDSPDKNPYPSAGKFRTDIF 182 (510)
Q Consensus 103 ~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Lvpam~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~pPS~g~F~~d~~ 182 (510)
+| .++|++|+||||++.... ...|||+|+++|++|+++||+++|||+|+|.++++..+| |||+|.|++++.
T Consensus 81 ~~--~~~i~~i~VGnEv~~~~~----~~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~---PPS~g~F~~~~~ 151 (310)
T PF00332_consen 81 LP--AVNIRYIAVGNEVLTGTD----NAYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSF---PPSAGVFRSDIA 151 (310)
T ss_dssp TT--TSEEEEEEEEES-TCCSG----GGGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-S---SGGG-EESHHHH
T ss_pred Cc--ccceeeeecccccccCcc----ceeeccHHHHHHHHHHhcCcCCcceeccccccccccccC---CCccCcccccch
Confidence 86 599999999999987532 228999999999999999999899999999999999875 999999999999
Q ss_pred HHHHHHHHHHHhcCCCceeecCccccccCCC-CCccccccccCCCceeecCCCccccchHHHhhHHHHHHHHHcCCCCCc
Q 048257 183 ATMKEIVDFLAENKAPFIVNIYPFLSLYGND-DFPVDYAFFDGGKSIVDSVTGNKYTDVFDANYDTCVSALKAAGHGDMP 261 (510)
Q Consensus 183 ~~~~~~ldFL~~t~sp~~vNiyPyf~~~~~~-~i~l~~AlF~~~~~~v~D~~~~~Y~n~fda~~Dav~~A~~k~g~~~~~ 261 (510)
..|+++++||.++++|||+|+||||+|..+| +++||||+|+++...+ | ++++|+||||+|+|++++||+|+|+++++
T Consensus 152 ~~~~~~l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~-D-~~~~y~nlfDa~~da~~~a~~~~g~~~~~ 229 (310)
T PF00332_consen 152 SVMDPLLKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVV-D-GGLAYTNLFDAMVDAVYAAMEKLGFPNVP 229 (310)
T ss_dssp HHHHHHHHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SE-E-TTEEESSHHHHHHHHHHHHHHTTT-TT--
T ss_pred hhhhHHHHHhhccCCCceeccchhhhccCCcccCCccccccccccccc-c-cchhhhHHHHHHHHHHHHHHHHhCCCCce
Confidence 9999999999999999999999999999997 8999999999987555 8 58899999999999999999999999999
Q ss_pred EEecccccCCCCCCCCCHHHHHHHHHhhhhhhhccCCCCCCCCCcceEEEEeecccCccCCCCCCccceeeeeecCCCCc
Q 048257 262 VVVGEIGWPTDGDKMANTANAFRYYSGLLPKLAADKGTPLRPGSYIEVYMFSLFDEDSKSIDPGNFEKHWGIFTYDGQPK 341 (510)
Q Consensus 262 vvVtETGWPS~G~~~As~~na~~y~~~lv~~~~~~~GTP~rpg~~~~~yiF~lFDE~~K~~~~g~~E~~wGlf~~d~~~k 341 (510)
|+|+||||||+|+..|+++||+.|++|+++|+. .|||+||+..+++||||||||+||++ ..+|||||||++||++|
T Consensus 230 vvv~ETGWPs~G~~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~--~~~E~~wGlf~~d~~~k 305 (310)
T PF00332_consen 230 VVVGETGWPSAGDPGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPG--PEVERHWGLFYPDGTPK 305 (310)
T ss_dssp EEEEEE---SSSSTTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSS--SGGGGG--SB-TTSSBS
T ss_pred eEEeccccccCCCCCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCC--CcccceeeeECCCCCee
Confidence 999999999999999999999999999999998 69999999999999999999999973 24999999999999999
Q ss_pred ccccc
Q 048257 342 FPMDF 346 (510)
Q Consensus 342 y~l~~ 346 (510)
|+|+|
T Consensus 306 y~~~f 310 (310)
T PF00332_consen 306 YDLDF 310 (310)
T ss_dssp S----
T ss_pred cCCCC
Confidence 99986
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-41 Score=331.57 Aligned_cols=252 Identities=21% Similarity=0.317 Sum_probs=197.5
Q ss_pred cCCeeeEEecCCCCC--CCChHHHHHHHHh-CCCC-EEEEccCCh----HHHHHhhcCCCEEEEEeccchhcccCCHHHH
Q 048257 20 RVNGLGVNWGTVASH--QLPPKTTVKLLKD-NGIL-KVKLFDADN----TILDALAGTDIEVMLAVSNQELKTMTDFDKA 91 (510)
Q Consensus 20 ~~~~~GvnYg~~~~n--~ps~~~vv~llk~-~~i~-~VRlY~~d~----~vL~A~a~tgi~V~vgV~n~~i~~~~~~~~A 91 (510)
+.+..+|+||++.+| +++.+++..+|.. ..++ .||+|.+|| +|++|+...|++|+||||..+- + ....
T Consensus 42 a~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd--~--~~~~ 117 (305)
T COG5309 42 ASGFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDD--I--HDAV 117 (305)
T ss_pred cccccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccc--h--hhhH
Confidence 455689999999888 8999999877755 2343 999999886 6888999999999999996431 1 1122
Q ss_pred HHHHHhhhccccCCCCceEEEEEecCccccccCCCCChhhHHHHHHHHHHHHHhcCCCCceEEecccccccccCCCCCCC
Q 048257 92 KEWVKANVTKYTNKGGVNIKFVAVGNEPFLKAYNGSHINTTFPALKNIQNALNDAGVGDTIKATVPFNADVYDSPDKNPY 171 (510)
Q Consensus 92 ~~Wv~~nv~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Lvpam~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~p 171 (510)
+.-+...+++++ +-+.|++|.||||+|+|+ ..++++|+.+|..+|.+|+.+|++ ++|+|.+++.++.+.
T Consensus 118 ~~til~ay~~~~--~~d~v~~v~VGnEal~r~--~~tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~n----- 186 (305)
T COG5309 118 EKTILSAYLPYN--GWDDVTTVTVGNEALNRN--DLTASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVINN----- 186 (305)
T ss_pred HHHHHHHHhccC--CCCceEEEEechhhhhcC--CCCHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeCC-----
Confidence 223555677775 358899999999999985 357999999999999999999997 578999999888863
Q ss_pred CCCccccchhHHHHHHHHHHHHhcCCCceeecCccccccCCCCCccccccccCCCceeecCCCccccchHHHhhHHHHHH
Q 048257 172 PSAGKFRTDIFATMKEIVDFLAENKAPFIVNIYPFLSLYGNDDFPVDYAFFDGGKSIVDSVTGNKYTDVFDANYDTCVSA 251 (510)
Q Consensus 172 PS~g~F~~d~~~~~~~~ldFL~~t~sp~~vNiyPyf~~~~~~~i~l~~AlF~~~~~~v~D~~~~~Y~n~fda~~Dav~~A 251 (510)
+.+++..||+ |+|.||||+... +.+..+ + +|-.|+.-|+.+
T Consensus 187 -----------p~l~~~SDfi-------a~N~~aYwd~~~-----------------~a~~~~---~-f~~~q~e~vqsa 227 (305)
T COG5309 187 -----------PELCQASDFI-------AANAHAYWDGQT-----------------VANAAG---T-FLLEQLERVQSA 227 (305)
T ss_pred -----------hHHhhhhhhh-------hcccchhccccc-----------------hhhhhh---H-HHHHHHHHHHHh
Confidence 3566677777 899999998532 222122 2 444556666655
Q ss_pred HHHcCCCCCcEEecccccCCCCCC----CCCHHHHHHHHHhhhhhhhccCCCCCCCCCcceEEEEeecccCccCCCCCCc
Q 048257 252 LKAAGHGDMPVVVGEIGWPTDGDK----MANTANAFRYYSGLLPKLAADKGTPLRPGSYIEVYMFSLFDEDSKSIDPGNF 327 (510)
Q Consensus 252 ~~k~g~~~~~vvVtETGWPS~G~~----~As~~na~~y~~~lv~~~~~~~GTP~rpg~~~~~yiF~lFDE~~K~~~~g~~ 327 (510)
. | .+|+++|+||||||+|.. .|+++||+.|++++++.+++. | .++|+||+|||+||..+.-.+
T Consensus 228 ~---g-~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~-------G--~d~fvfeAFdd~WK~~~~y~V 294 (305)
T COG5309 228 C---G-TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSC-------G--YDVFVFEAFDDDWKADGSYGV 294 (305)
T ss_pred c---C-CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhcc-------C--ccEEEeeeccccccCccccch
Confidence 2 2 349999999999999986 499999999999999988752 4 899999999999998543369
Q ss_pred cceeeeeecCC
Q 048257 328 EKHWGIFTYDG 338 (510)
Q Consensus 328 E~~wGlf~~d~ 338 (510)
|+|||+|+.|+
T Consensus 295 EkywGv~~s~~ 305 (305)
T COG5309 295 EKYWGVLSSDR 305 (305)
T ss_pred hhceeeeccCC
Confidence 99999998774
No 3
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.93 E-value=3.4e-26 Score=191.87 Aligned_cols=83 Identities=42% Similarity=0.867 Sum_probs=78.6
Q ss_pred ceeeeCCCCCChHHHHHHHHhccCc-ccccccCCCCCCC-CCCcccchhHHHHHHHHhhCCCCCCCCCCCceEEEecCCC
Q 048257 367 KWCTVNPDATDTSKLAEKMQFACNK-SDCTSLGFGSSCN-KLDGNGKVSYAFNMYYQMNNQDDRACDFQGLGKVTTENIS 444 (510)
Q Consensus 367 ~~CV~~~~~~~~~~l~~~l~~aCg~-~dCs~I~~~g~c~-~c~~~~~lSya~N~YYq~~~~~~~aCdF~G~a~~~s~~ps 444 (510)
+|||+|+++ ++++|+++|||||++ +||++|++||+|+ +|+.++|||||||+|||++++...+|||+|+|++++.||+
T Consensus 1 ~wCv~~~~~-~~~~l~~~~~yaCg~~~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps 79 (85)
T smart00768 1 LWCVAKPDA-DEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPS 79 (85)
T ss_pred CccccCCCC-CHHHHHHHHHHHhcCCCCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCC
Confidence 599999999 689999999999999 9999999999996 5678999999999999999999999999999999999999
Q ss_pred CCccee
Q 048257 445 QGTCNF 450 (510)
Q Consensus 445 ~~~C~~ 450 (510)
.++|+|
T Consensus 80 ~~~C~~ 85 (85)
T smart00768 80 TGSCKF 85 (85)
T ss_pred CCccCC
Confidence 999976
No 4
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.85 E-value=1e-21 Score=162.06 Aligned_cols=70 Identities=34% Similarity=0.780 Sum_probs=60.3
Q ss_pred ceeeeCCCCCChHHHHHHHHhccCc--ccccccCCCCC------CCCCCcccchhHHHHHHHHhhCCCCCCCCCCCceE
Q 048257 367 KWCTVNPDATDTSKLAEKMQFACNK--SDCTSLGFGSS------CNKLDGNGKVSYAFNMYYQMNNQDDRACDFQGLGK 437 (510)
Q Consensus 367 ~~CV~~~~~~~~~~l~~~l~~aCg~--~dCs~I~~~g~------c~~c~~~~~lSya~N~YYq~~~~~~~aCdF~G~a~ 437 (510)
+|||+++++ ++++|+++|||||++ +||++|++||+ .++|+.++|||||||+|||++++...+|||+|+||
T Consensus 1 l~Cv~~~~~-~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDA-DDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS--HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCC-CHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 699999999 789999999999998 99999999987 57888999999999999999999999999999986
No 5
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.03 E-value=5.1e-09 Score=106.68 Aligned_cols=126 Identities=22% Similarity=0.302 Sum_probs=74.7
Q ss_pred eeEEecCCCC-------CCCChH----HHHHHHHhCCCCEEEEccCCh-----HHHHHhhcCCCEEEEEeccchhccc--
Q 048257 24 LGVNWGTVAS-------HQLPPK----TTVKLLKDNGILKVKLFDADN-----TILDALAGTDIEVMLAVSNQELKTM-- 85 (510)
Q Consensus 24 ~GvnYg~~~~-------n~ps~~----~vv~llk~~~i~~VRlY~~d~-----~vL~A~a~tgi~V~vgV~n~~i~~~-- 85 (510)
.||.|.+-++ |..+-. ..+.+||++|++.||+|..|| ..+++|++.||.|++.|... -.++
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p-~~sI~r 108 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTP-NGSINR 108 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BT-TBS--T
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCC-CccccC
Confidence 6999998776 322222 346789999999999998875 68999999999999999654 2223
Q ss_pred CCHHHHHHH-------HHhhhccccCCCCceEEEEEecCccccccCCCCChhhHHHHHHHHHHHHHhcCCCCceEEe
Q 048257 86 TDFDKAKEW-------VKANVTKYTNKGGVNIKFVAVGNEPFLKAYNGSHINTTFPALKNIQNALNDAGVGDTIKAT 155 (510)
Q Consensus 86 ~~~~~A~~W-------v~~nv~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Lvpam~ni~~aL~~~gl~~~IkVs 155 (510)
.++ +..| ...-|..+- +-+++-+..+|||++........++.+-.++|++|+.+++.++. +|+|+
T Consensus 109 ~~P--~~sw~~~l~~~~~~vid~fa--~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVG 180 (314)
T PF03198_consen 109 SDP--APSWNTDLLDRYFAVIDAFA--KYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVG 180 (314)
T ss_dssp TS--------HHHHHHHHHHHHHHT--T-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EE
T ss_pred CCC--cCCCCHHHHHHHHHHHHHhc--cCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCcee
Confidence 122 1122 122233332 12789999999999986543345888999999999999999985 58887
No 6
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.91 E-value=1.2e-07 Score=98.61 Aligned_cols=246 Identities=17% Similarity=0.260 Sum_probs=122.8
Q ss_pred hHHHHHHHHhCCCC--EEEEcc-C------C-hHHH---HHhhcCCCEEEEEeccc---------hhcc-cCC--H----
Q 048257 38 PKTTVKLLKDNGIL--KVKLFD-A------D-NTIL---DALAGTDIEVMLAVSNQ---------ELKT-MTD--F---- 88 (510)
Q Consensus 38 ~~~vv~llk~~~i~--~VRlY~-~------d-~~vL---~A~a~tgi~V~vgV~n~---------~i~~-~~~--~---- 88 (510)
..++.++||..|++ |+|+|. + | ..++ +.+++.||+|+|...-. .++. +.+ .
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 46789999999998 555552 1 1 1334 45568999999998421 2222 222 1
Q ss_pred HHHHHHHHhhhccccCCCCceEEEEEecCccccc--cC--CCCChhhHHHHHHHHHHHHHhcCCCCceEEeccccccccc
Q 048257 89 DKAKEWVKANVTKYTNKGGVNIKFVAVGNEPFLK--AY--NGSHINTTFPALKNIQNALNDAGVGDTIKATVPFNADVYD 164 (510)
Q Consensus 89 ~~A~~Wv~~nv~~y~p~~~~~I~~I~VGNEvl~~--~~--~~~~~~~Lvpam~ni~~aL~~~gl~~~IkVsT~~~~~vl~ 164 (510)
.+..++.+.-+..+ -..+..++.|-||||+-.. ++ ...-.+.+...++.-.+++|+.+- .+||-.- +.
T Consensus 106 ~~v~~yT~~vl~~l-~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH-----~~ 177 (332)
T PF07745_consen 106 KAVYDYTKDVLQAL-KAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLH-----LA 177 (332)
T ss_dssp HHHHHHHHHHHHHH-HHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEE-----ES
T ss_pred HHHHHHHHHHHHHH-HHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEE-----EC
Confidence 12223333333322 1235678899999997432 11 122367788888888888888554 3555322 22
Q ss_pred CCCCCCCCCCccccchhHHHHHHHHHHHHhcC---CCceeecCccccccCCCCCccccccccCCCceeecCCCccccchH
Q 048257 165 SPDKNPYPSAGKFRTDIFATMKEIVDFLAENK---APFIVNIYPFLSLYGNDDFPVDYAFFDGGKSIVDSVTGNKYTDVF 241 (510)
Q Consensus 165 ~s~~~~pPS~g~F~~d~~~~~~~~ldFL~~t~---sp~~vNiyPyf~~~~~~~i~l~~AlF~~~~~~v~D~~~~~Y~n~f 241 (510)
+ |-. ...++-..+.|...+ +.+.++.||||... . +.+
T Consensus 178 ~-----~~~--------~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~------------------l---------~~l 217 (332)
T PF07745_consen 178 N-----GGD--------NDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGT------------------L---------EDL 217 (332)
T ss_dssp ------TTS--------HHHHHHHHHHHHHTTGG-SEEEEEE-STTST-------------------H---------HHH
T ss_pred C-----CCc--------hHHHHHHHHHHHhcCCCcceEEEecCCCCcch------------------H---------HHH
Confidence 1 100 112333444444433 78899999999730 1 112
Q ss_pred HHhhHHHHHHHHHcCCCCCcEEecccccCCCCCC-----------------CCCHHHHHHHHHhhhhhhhccCCCCCCCC
Q 048257 242 DANYDTCVSALKAAGHGDMPVVVGEIGWPTDGDK-----------------MANTANAFRYYSGLLPKLAADKGTPLRPG 304 (510)
Q Consensus 242 da~~Dav~~A~~k~g~~~~~vvVtETGWPS~G~~-----------------~As~~na~~y~~~lv~~~~~~~GTP~rpg 304 (510)
...++.+ .+| | +|+|+|.|||||..-+. .+|++.|+.|++++++.+.+-.+ +
T Consensus 218 ~~~l~~l---~~r--y-~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~-----~ 286 (332)
T PF07745_consen 218 KNNLNDL---ASR--Y-GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPN-----G 286 (332)
T ss_dssp HHHHHHH---HHH--H-T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------T
T ss_pred HHHHHHH---HHH--h-CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhcc-----C
Confidence 2233332 233 3 58999999999988111 26899999999999998876211 1
Q ss_pred CcceEEEEee-cccCc---cCCCCC-CccceeeeeecCCCCcccc
Q 048257 305 SYIEVYMFSL-FDEDS---KSIDPG-NFEKHWGIFTYDGQPKFPM 344 (510)
Q Consensus 305 ~~~~~yiF~l-FDE~~---K~~~~g-~~E~~wGlf~~d~~~ky~l 344 (510)
.-.-+|+-|- .-..+ +. ..| ..|.. +||+.+|++--.|
T Consensus 287 ~g~GvfYWeP~w~~~~~~~~~-~~g~~w~n~-~lFD~~g~~l~sl 329 (332)
T PF07745_consen 287 GGLGVFYWEPAWIPVENGWDW-GGGSSWDNQ-ALFDFNGNALPSL 329 (332)
T ss_dssp TEEEEEEE-TT-GGGTTHHHH-TTTSSSSBG-SSB-TTSBB-GGG
T ss_pred CeEEEEeeccccccCCccccc-CCCCCcccc-ccCCCCCCCchHh
Confidence 1255666552 11111 11 122 23333 8888887764443
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.21 E-value=1.5e-05 Score=80.45 Aligned_cols=206 Identities=20% Similarity=0.285 Sum_probs=113.8
Q ss_pred hHHHHHHHHhCCCCEEE--Ec----cCC--------hH------HHHHhhcCCCEEEEEeccchhcccCCH---HHHHHH
Q 048257 38 PKTTVKLLKDNGILKVK--LF----DAD--------NT------ILDALAGTDIEVMLAVSNQELKTMTDF---DKAKEW 94 (510)
Q Consensus 38 ~~~vv~llk~~~i~~VR--lY----~~d--------~~------vL~A~a~tgi~V~vgV~n~~i~~~~~~---~~A~~W 94 (510)
.+++.+.||..|++.|| +| |.| .+ +-+-+++.||+|++-..-.+. ++++ ..-.+|
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDf--waDPakQ~kPkaW 142 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDF--WADPAKQKKPKAW 142 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhh--ccChhhcCCcHHh
Confidence 46678999999998555 55 333 12 333445789999998854321 1221 112234
Q ss_pred HHh-------hhccc-------cCCCCceEEEEEecCccccc--cCCCC--ChhhHHHHHHHHHHHHHhcCCCCceEEec
Q 048257 95 VKA-------NVTKY-------TNKGGVNIKFVAVGNEPFLK--AYNGS--HINTTFPALKNIQNALNDAGVGDTIKATV 156 (510)
Q Consensus 95 v~~-------nv~~y-------~p~~~~~I~~I~VGNEvl~~--~~~~~--~~~~Lvpam~ni~~aL~~~gl~~~IkVsT 156 (510)
..- .|-.| .-+.+..+.-|-||||.-.. ++.+. -.+.+-..++.-.+++|... ..|||-.
T Consensus 143 ~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~l 220 (403)
T COG3867 143 ENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVAL 220 (403)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEEE
Confidence 221 11111 11224567889999997421 11122 24556666666666666644 3466643
Q ss_pred ccccccccCCCCCCCCCCccccchhHHHHHHHHHHHHhcCCCceeecCccccccCCCCCccccccccCCCceeecCCCcc
Q 048257 157 PFNADVYDSPDKNPYPSAGKFRTDIFATMKEIVDFLAENKAPFIVNIYPFLSLYGNDDFPVDYAFFDGGKSIVDSVTGNK 236 (510)
Q Consensus 157 ~~~~~vl~~s~~~~pPS~g~F~~d~~~~~~~~ldFL~~t~sp~~vNiyPyf~~~~~~~i~l~~AlF~~~~~~v~D~~~~~ 236 (510)
- |.+ |--.+.||-=...+-+.-+|| +.|..--||||... +.+ |+
T Consensus 221 H-----la~-----g~~n~~y~~~fd~ltk~nvdf-----DVig~SyYpyWhgt------------------l~n---L~ 264 (403)
T COG3867 221 H-----LAE-----GENNSLYRWIFDELTKRNVDF-----DVIGSSYYPYWHGT------------------LNN---LT 264 (403)
T ss_pred E-----ecC-----CCCCchhhHHHHHHHHcCCCc-----eEEeeeccccccCc------------------HHH---HH
Confidence 2 333 223345542111223333444 56778889999852 111 11
Q ss_pred ccchHHHhhHHHHHHHHHcCCCCCcEEeccccc--------------CCCCCC---CCCHHHHHHHHHhhhhhhhc
Q 048257 237 YTDVFDANYDTCVSALKAAGHGDMPVVVGEIGW--------------PTDGDK---MANTANAFRYYSGLLPKLAA 295 (510)
Q Consensus 237 Y~n~fda~~Dav~~A~~k~g~~~~~vvVtETGW--------------PS~G~~---~As~~na~~y~~~lv~~~~~ 295 (510)
+ .++.+.. + | +|.|+|.||+. |+.+.. ..+++-|++|.+++|..+..
T Consensus 265 ~------nl~dia~---r--Y-~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n 328 (403)
T COG3867 265 T------NLNDIAS---R--Y-HKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN 328 (403)
T ss_pred h------HHHHHHH---H--h-cCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh
Confidence 1 1122211 1 3 68999999998 555433 27889999999999998874
No 8
>PRK10150 beta-D-glucuronidase; Provisional
Probab=97.61 E-value=0.0069 Score=68.15 Aligned_cols=240 Identities=15% Similarity=0.117 Sum_probs=130.3
Q ss_pred HHHHHHhCCCCEEEEcc--CChHHHHHhhcCCCEEEEEeccchh---------------cccC----CH---HHHHHHHH
Q 048257 41 TVKLLKDNGILKVKLFD--ADNTILDALAGTDIEVMLAVSNQEL---------------KTMT----DF---DKAKEWVK 96 (510)
Q Consensus 41 vv~llk~~~i~~VRlY~--~d~~vL~A~a~tgi~V~vgV~n~~i---------------~~~~----~~---~~A~~Wv~ 96 (510)
.+++||..|++.||+-. .++..+.++-..||-|+.=++.... .... ++ .....-++
T Consensus 318 d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (604)
T PRK10150 318 DHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIR 397 (604)
T ss_pred HHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 45678999999999943 3578999999999999865532100 0010 01 11222245
Q ss_pred hhhccccCCCCceEEEEEecCccccccCCCCChhhHHHHHHHHHHHHHhcCCCCceEEecccccccccCCCCCCCCCCcc
Q 048257 97 ANVTKYTNKGGVNIKFVAVGNEPFLKAYNGSHINTTFPALKNIQNALNDAGVGDTIKATVPFNADVYDSPDKNPYPSAGK 176 (510)
Q Consensus 97 ~nv~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Lvpam~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~pPS~g~ 176 (510)
..|..+. .-..|..-.+|||.-.. ....-..++.+.+.+++..=++. |+....+ .. +|..
T Consensus 398 ~mv~r~~--NHPSIi~Ws~gNE~~~~------~~~~~~~~~~l~~~~k~~DptR~--vt~~~~~---~~-----~~~~-- 457 (604)
T PRK10150 398 ELIARDK--NHPSVVMWSIANEPASR------EQGAREYFAPLAELTRKLDPTRP--VTCVNVM---FA-----TPDT-- 457 (604)
T ss_pred HHHHhcc--CCceEEEEeeccCCCcc------chhHHHHHHHHHHHHHhhCCCCc--eEEEecc---cC-----Cccc--
Confidence 5566553 12467789999996432 12233455566666665554332 3433211 00 1110
Q ss_pred ccchhHHHHHHHHHHHHhcCCCceeecCccccccCCCCCccccccccCCCceeecCCCccccchHHHhhHHHHHHHHHcC
Q 048257 177 FRTDIFATMKEIVDFLAENKAPFIVNIYPFLSLYGNDDFPVDYAFFDGGKSIVDSVTGNKYTDVFDANYDTCVSALKAAG 256 (510)
Q Consensus 177 F~~d~~~~~~~~ldFL~~t~sp~~vNiyPyf~~~~~~~i~l~~AlF~~~~~~v~D~~~~~Y~n~fda~~Dav~~A~~k~g 256 (510)
..+.+++|++ ..|.|+=|- .+. .| -......|+..++.. .+ .
T Consensus 458 ------~~~~~~~Dv~-------~~N~Y~~wy--~~~----------------~~--~~~~~~~~~~~~~~~----~~-~ 499 (604)
T PRK10150 458 ------DTVSDLVDVL-------CLNRYYGWY--VDS----------------GD--LETAEKVLEKELLAW----QE-K 499 (604)
T ss_pred ------ccccCcccEE-------EEcccceec--CCC----------------CC--HHHHHHHHHHHHHHH----HH-h
Confidence 0112345554 678764221 000 00 000011222222221 11 1
Q ss_pred CCCCcEEecccccCCCC------CCCCCHHHHHHHHHhhhhhhhccCCCCCCCCCcceEEEEeecccCccCCCCCCccce
Q 048257 257 HGDMPVVVGEIGWPTDG------DKMANTANAFRYYSGLLPKLAADKGTPLRPGSYIEVYMFSLFDEDSKSIDPGNFEKH 330 (510)
Q Consensus 257 ~~~~~vvVtETGWPS~G------~~~As~~na~~y~~~lv~~~~~~~GTP~rpg~~~~~yiF~lFDE~~K~~~~g~~E~~ 330 (510)
+ ++|++|+|.|+.+.- +..-+.+.|..|++...+.+.+ +|. -.-.|+..+||-....+..-.-..+
T Consensus 500 ~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~iW~~~D~~~~~g~~~~~g~~ 571 (604)
T PRK10150 500 L-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQVWNFADFATSQGILRVGGNK 571 (604)
T ss_pred c-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEEEeeeccCCCCCCcccCCCc
Confidence 3 899999999976532 1234788999998887776653 233 3458999999955442110001247
Q ss_pred eeeeecCCCCcccccc
Q 048257 331 WGIFTYDGQPKFPMDF 346 (510)
Q Consensus 331 wGlf~~d~~~ky~l~~ 346 (510)
.||++.||+||-..-+
T Consensus 572 ~Gl~~~dr~~k~~~~~ 587 (604)
T PRK10150 572 KGIFTRDRQPKSAAFL 587 (604)
T ss_pred ceeEcCCCCChHHHHH
Confidence 8999999999976544
No 9
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.56 E-value=0.0034 Score=62.33 Aligned_cols=131 Identities=20% Similarity=0.126 Sum_probs=82.0
Q ss_pred CeeeEEecCCCCCCCChHHHHHHHHhCCCCEEEEccC-------------Ch-------HHHHHhhcCCCEEEEEeccc-
Q 048257 22 NGLGVNWGTVASHQLPPKTTVKLLKDNGILKVKLFDA-------------DN-------TILDALAGTDIEVMLAVSNQ- 80 (510)
Q Consensus 22 ~~~GvnYg~~~~n~ps~~~vv~llk~~~i~~VRlY~~-------------d~-------~vL~A~a~tgi~V~vgV~n~- 80 (510)
...|+|-- ..++. ..++.++.|++.|++.|||.-. +. .+|++++..||.|+|.+...
T Consensus 9 ~~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~ 86 (281)
T PF00150_consen 9 NWRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAP 86 (281)
T ss_dssp EEEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEEST
T ss_pred Eeeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 34566665 22112 6688899999999999999721 11 47788889999999998763
Q ss_pred h---hccc-CCHHHHHHHHHh---hhccccCCCCceEEEEEecCccccccCCC----CChhhHHHHHHHHHHHHHhcCCC
Q 048257 81 E---LKTM-TDFDKAKEWVKA---NVTKYTNKGGVNIKFVAVGNEPFLKAYNG----SHINTTFPALKNIQNALNDAGVG 149 (510)
Q Consensus 81 ~---i~~~-~~~~~A~~Wv~~---nv~~y~p~~~~~I~~I~VGNEvl~~~~~~----~~~~~Lvpam~ni~~aL~~~gl~ 149 (510)
. -... .......+|+++ .|...|. ....|.++=+.||+....... .....+.+.++.+.+++|+.+-+
T Consensus 87 ~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~-~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~ 165 (281)
T PF00150_consen 87 GWANGGDGYGNNDTAQAWFKSFWRALAKRYK-DNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPN 165 (281)
T ss_dssp TCSSSTSTTTTHHHHHHHHHHHHHHHHHHHT-TTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSS
T ss_pred cccccccccccchhhHHHHHhhhhhhccccC-CCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCc
Confidence 0 1111 223333444333 2333331 234577999999998652210 01367889999999999999976
Q ss_pred CceEEe
Q 048257 150 DTIKAT 155 (510)
Q Consensus 150 ~~IkVs 155 (510)
..|-|.
T Consensus 166 ~~i~~~ 171 (281)
T PF00150_consen 166 HLIIVG 171 (281)
T ss_dssp SEEEEE
T ss_pred ceeecC
Confidence 544443
No 10
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.27 E-value=0.011 Score=59.14 Aligned_cols=81 Identities=16% Similarity=0.118 Sum_probs=56.0
Q ss_pred HHHHHHHHHcCCCCCcEEecccccCCCCCCCCCHHHHHHHHHhhhhhhhccCCCCCCCCCcceEEEEeeccc-CccCCCC
Q 048257 246 DTCVSALKAAGHGDMPVVVGEIGWPTDGDKMANTANAFRYYSGLLPKLAADKGTPLRPGSYIEVYMFSLFDE-DSKSIDP 324 (510)
Q Consensus 246 Dav~~A~~k~g~~~~~vvVtETGWPS~G~~~As~~na~~y~~~lv~~~~~~~GTP~rpg~~~~~yiF~lFDE-~~K~~~~ 324 (510)
+.+...|++++--++||+|||.+-|..+ +++.|+.+++++++.+.+. |+ ..-+++..+.|. .|.+
T Consensus 169 ~~~~~~l~~~~~~g~pi~iTE~dv~~~~----~~~~qA~~~~~~l~~~~~~------p~-v~gi~~Wg~~d~~~W~~--- 234 (254)
T smart00633 169 AEIRAALDRFASLGLEIQITELDISGYP----NPQAQAADYEEVFKACLAH------PA-VTGVTVWGVTDKYSWLD--- 234 (254)
T ss_pred HHHHHHHHHHHHcCCceEEEEeecCCCC----cHHHHHHHHHHHHHHHHcC------CC-eeEEEEeCCccCCcccC---
Confidence 3344555555545899999999998753 4488899999999988764 22 234556666654 3543
Q ss_pred CCccceeeeeecCCCCccc
Q 048257 325 GNFEKHWGIFTYDGQPKFP 343 (510)
Q Consensus 325 g~~E~~wGlf~~d~~~ky~ 343 (510)
+.+-|||+.|+++|-.
T Consensus 235 ---~~~~~L~d~~~~~kpa 250 (254)
T smart00633 235 ---GGAPLLFDANYQPKPA 250 (254)
T ss_pred ---CCCceeECCCCCCChh
Confidence 1467899999988854
No 11
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.03 E-value=0.023 Score=56.67 Aligned_cols=168 Identities=17% Similarity=0.142 Sum_probs=94.8
Q ss_pred ceEEEEEecCccccccCCCCChhhHHHHHHHHHHHHHhcCCCCceEEecccccccccCCCCCCCCCCccccchhHHHHHH
Q 048257 108 VNIKFVAVGNEPFLKAYNGSHINTTFPALKNIQNALNDAGVGDTIKATVPFNADVYDSPDKNPYPSAGKFRTDIFATMKE 187 (510)
Q Consensus 108 ~~I~~I~VGNEvl~~~~~~~~~~~Lvpam~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~pPS~g~F~~d~~~~~~~ 187 (510)
..++.|..=||+=........+++.+...+++.+.|+. ..+|+..|.....-.. +|... .-|.+
T Consensus 64 ~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~----~~~~l~sPa~~~~~~~-----~~~g~-------~Wl~~ 127 (239)
T PF11790_consen 64 PGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS----PGVKLGSPAVAFTNGG-----TPGGL-------DWLSQ 127 (239)
T ss_pred cCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc----CCcEEECCeecccCCC-----CCCcc-------HHHHH
Confidence 46789999999966543344577777777777777763 2478776642111000 01111 12222
Q ss_pred HHHHHHhcCCCceeecCccccccCCCCCccccccccCCCceeecCCCccccchHHHhhHHHHHHHHHcCCCCCcEEeccc
Q 048257 188 IVDFLAENKAPFIVNIYPFLSLYGNDDFPVDYAFFDGGKSIVDSVTGNKYTDVFDANYDTCVSALKAAGHGDMPVVVGEI 267 (510)
Q Consensus 188 ~ldFL~~t~sp~~vNiyPyf~~~~~~~i~l~~AlF~~~~~~v~D~~~~~Y~n~fda~~Dav~~A~~k~g~~~~~vvVtET 267 (510)
.++-+.....+=.|++|.| . .-++...+.|....++.| +||+|||.
T Consensus 128 F~~~~~~~~~~D~iavH~Y-~------------------------------~~~~~~~~~i~~~~~~~~---kPIWITEf 173 (239)
T PF11790_consen 128 FLSACARGCRVDFIAVHWY-G------------------------------GDADDFKDYIDDLHNRYG---KPIWITEF 173 (239)
T ss_pred HHHhcccCCCccEEEEecC-C------------------------------cCHHHHHHHHHHHHHHhC---CCEEEEee
Confidence 2222211112223455555 1 001222333333334443 99999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHhhhhhhhccCCCCCCCCCcceEEEEeecccCccCCCCCCccceeeeeecCCC
Q 048257 268 GWPTDGDKMANTANAFRYYSGLLPKLAADKGTPLRPGSYIEVYMFSLFDEDSKSIDPGNFEKHWGIFTYDGQ 339 (510)
Q Consensus 268 GWPS~G~~~As~~na~~y~~~lv~~~~~~~GTP~rpg~~~~~yiF~lFDE~~K~~~~g~~E~~wGlf~~d~~ 339 (510)
|+.. +....+.++++.|++..+..+.+. +. .-.++||. |-..+. ....+-.|++.+|+
T Consensus 174 ~~~~-~~~~~~~~~~~~fl~~~~~~ld~~------~~-VeryawF~-~~~~~~-----~~~~~~~L~~~~G~ 231 (239)
T PF11790_consen 174 GCWN-GGSQGSDEQQASFLRQALPWLDSQ------PY-VERYAWFG-FMNDGS-----GVNPNSALLDADGS 231 (239)
T ss_pred cccC-CCCCCCHHHHHHHHHHHHHHHhcC------CC-eeEEEecc-cccccC-----CCccccccccCCCC
Confidence 9877 444578899999999999888642 33 45688888 333322 24556677777764
No 12
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.76 E-value=0.15 Score=52.18 Aligned_cols=95 Identities=19% Similarity=0.216 Sum_probs=55.6
Q ss_pred eeeEEecCCCCC---CCChHHH---HHHHHhCCCCEEEEcc--CChHHHHHhhcCCCEEEEEeccchhcc---------c
Q 048257 23 GLGVNWGTVASH---QLPPKTT---VKLLKDNGILKVKLFD--ADNTILDALAGTDIEVMLAVSNQELKT---------M 85 (510)
Q Consensus 23 ~~GvnYg~~~~n---~ps~~~v---v~llk~~~i~~VRlY~--~d~~vL~A~a~tgi~V~vgV~n~~i~~---------~ 85 (510)
..|||+...... ..+.+++ +++||+.|++.||+.. .++..+.++-..||-|+.-++...... .
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 359998864322 2344443 5678999999999964 357899999999999998886521110 0
Q ss_pred -CCH---HHHHHHHHhhhccccCCCCceEEEEEecCcc
Q 048257 86 -TDF---DKAKEWVKANVTKYTNKGGVNIKFVAVGNEP 119 (510)
Q Consensus 86 -~~~---~~A~~Wv~~nv~~y~p~~~~~I~~I~VGNEv 119 (510)
.++ ......++..|..+.- --.|..-.+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~N--HPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRN--HPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT---TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcC--cCchheeecCccC
Confidence 122 2334456666666531 2457788899998
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=93.92 E-value=7.3 Score=42.28 Aligned_cols=78 Identities=22% Similarity=0.347 Sum_probs=50.1
Q ss_pred HHHHHHHHhCCCCEEEEcc------------CC-------hHHHHHhhcCCCEEEEEeccchhcc-------cCCHHHHH
Q 048257 39 KTTVKLLKDNGILKVKLFD------------AD-------NTILDALAGTDIEVMLAVSNQELKT-------MTDFDKAK 92 (510)
Q Consensus 39 ~~vv~llk~~~i~~VRlY~------------~d-------~~vL~A~a~tgi~V~vgV~n~~i~~-------~~~~~~A~ 92 (510)
++.+++|+..|++.+|+=- .| .++|..+...||+++|.+.--+++. +.++...+
T Consensus 57 ~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~gGw~~~~~~~ 136 (427)
T TIGR03356 57 EEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDRGGWLNRDTAE 136 (427)
T ss_pred HHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhcCCCCChHHHH
Confidence 5678899999999999731 12 1588899999999999995433332 22332222
Q ss_pred ---HHHHhhhccccCCCCceEEEEEecCccc
Q 048257 93 ---EWVKANVTKYTNKGGVNIKFVAVGNEPF 120 (510)
Q Consensus 93 ---~Wv~~nv~~y~p~~~~~I~~I~VGNEvl 120 (510)
+..+.-+..| +..|+..+.=||+.
T Consensus 137 ~f~~ya~~~~~~~----~d~v~~w~t~NEp~ 163 (427)
T TIGR03356 137 WFAEYAAVVAERL----GDRVKHWITLNEPW 163 (427)
T ss_pred HHHHHHHHHHHHh----CCcCCEEEEecCcc
Confidence 2223333344 25788888888875
No 14
>PLN02814 beta-glucosidase
Probab=82.51 E-value=87 Score=34.90 Aligned_cols=78 Identities=17% Similarity=0.287 Sum_probs=50.8
Q ss_pred HHHHHHHHhCCCCEEEEc-------c-----CCh-------HHHHHhhcCCCEEEEEeccchhccc-C-------CHHHH
Q 048257 39 KTTVKLLKDNGILKVKLF-------D-----ADN-------TILDALAGTDIEVMLAVSNQELKTM-T-------DFDKA 91 (510)
Q Consensus 39 ~~vv~llk~~~i~~VRlY-------~-----~d~-------~vL~A~a~tgi~V~vgV~n~~i~~~-~-------~~~~A 91 (510)
++.++|||.+|++.-|+= = .|+ +++.++...||+-+|.+.--+++.. . +.+.+
T Consensus 80 ~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i 159 (504)
T PLN02814 80 KEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKII 159 (504)
T ss_pred HHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHH
Confidence 567899999998887763 1 132 6889999999999999965555432 2 22222
Q ss_pred H---HHHHhhhccccCCCCceEEEEEecCccc
Q 048257 92 K---EWVKANVTKYTNKGGVNIKFVAVGNEPF 120 (510)
Q Consensus 92 ~---~Wv~~nv~~y~p~~~~~I~~I~VGNEvl 120 (510)
+ +..+.-+..| +++|+..+.=||+.
T Consensus 160 ~~F~~YA~~~f~~f----gdrVk~WiT~NEP~ 187 (504)
T PLN02814 160 EDFTAFADVCFREF----GEDVKLWTTINEAT 187 (504)
T ss_pred HHHHHHHHHHHHHh----CCcCCEEEeccccc
Confidence 1 1122223344 47888888888875
No 15
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=76.20 E-value=6.6 Score=41.53 Aligned_cols=81 Identities=20% Similarity=0.330 Sum_probs=50.5
Q ss_pred HHHHHHHHhCCCCEEEEccC-------C---------hHHHHHhhcCCCEEEEEeccchhc--------c----------
Q 048257 39 KTTVKLLKDNGILKVKLFDA-------D---------NTILDALAGTDIEVMLAVSNQELK--------T---------- 84 (510)
Q Consensus 39 ~~vv~llk~~~i~~VRlY~~-------d---------~~vL~A~a~tgi~V~vgV~n~~i~--------~---------- 84 (510)
++.+++||..|++.|||... . -.+|..++..||+|+|+++....+ .
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~ 92 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRR 92 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSB
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCc
Confidence 45678888899999998421 1 157888899999999999632111 0
Q ss_pred --------c--CC---HHHHHHHHHhhhccccCCCCceEEEEEecCcccc
Q 048257 85 --------M--TD---FDKAKEWVKANVTKYTNKGGVNIKFVAVGNEPFL 121 (510)
Q Consensus 85 --------~--~~---~~~A~~Wv~~nv~~y~p~~~~~I~~I~VGNEvl~ 121 (510)
. .+ ...+.+.++.-+..|- ....|.++.|.||.-.
T Consensus 93 ~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~--~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 93 RGFGSRQHYCPNSPAYREYARRFIRALAERYG--DHPAVIGWQIDNEPGY 140 (374)
T ss_dssp EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHT--TTTTEEEEEECCSTTC
T ss_pred CccCCccccchhHHHHHHHHHHHHHHHHhhcc--ccceEEEEEeccccCc
Confidence 0 00 1234555555555552 2457999999999755
No 16
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=76.13 E-value=14 Score=39.15 Aligned_cols=96 Identities=11% Similarity=0.217 Sum_probs=58.6
Q ss_pred CCCEEEEcc-CChHHHHHhhcCCCEEEEEeccchhcccCCHHHHHHHHHhhhccccCCCCceEEEEEecCccccccCCCC
Q 048257 49 GILKVKLFD-ADNTILDALAGTDIEVMLAVSNQELKTMTDFDKAKEWVKANVTKYTNKGGVNIKFVAVGNEPFLKAYNGS 127 (510)
Q Consensus 49 ~i~~VRlY~-~d~~vL~A~a~tgi~V~vgV~n~~i~~~~~~~~A~~Wv~~nv~~y~p~~~~~I~~I~VGNEvl~~~~~~~ 127 (510)
.+++|-+|+ .|++++..+...|++|++..... ...++++..-+++++.-|. ++- .-...+|-+==|-..... ..
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l~~~~~R~~fi~siv~-~~~--~~gfDGIdIDwE~p~~~~-~~ 129 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQISNPTYRTQWIQQKVE-LAK--SQFMDGINIDIEQPITKG-SP 129 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHcCCHHHHHHHHHHHHH-HHH--HhCCCeEEEcccCCCCCC-cc
Confidence 578999985 47899998899999999864321 2223455444445544332 221 123456655445332111 12
Q ss_pred ChhhHHHHHHHHHHHHHhcCCC
Q 048257 128 HINTTFPALKNIQNALNDAGVG 149 (510)
Q Consensus 128 ~~~~Lvpam~ni~~aL~~~gl~ 149 (510)
....++.-|+++|++|++.+.+
T Consensus 130 d~~~~t~llkelr~~l~~~~~~ 151 (358)
T cd02875 130 EYYALTELVKETTKAFKKENPG 151 (358)
T ss_pred hHHHHHHHHHHHHHHHhhcCCC
Confidence 2567889999999999987643
No 17
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=69.01 E-value=1.6 Score=47.53 Aligned_cols=278 Identities=16% Similarity=0.185 Sum_probs=128.0
Q ss_pred HHHHHHHHhCCCCEEEEc--------c-----CC-------hHHHHHhhcCCCEEEEEeccchhcc-------cCCHHHH
Q 048257 39 KTTVKLLKDNGILKVKLF--------D-----AD-------NTILDALAGTDIEVMLAVSNQELKT-------MTDFDKA 91 (510)
Q Consensus 39 ~~vv~llk~~~i~~VRlY--------~-----~d-------~~vL~A~a~tgi~V~vgV~n~~i~~-------~~~~~~A 91 (510)
++.+++|+++|++..|+- + .| .++|..+...||+.+|.+.--+++. +.++...
T Consensus 61 ~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~~ 140 (455)
T PF00232_consen 61 KEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRETV 140 (455)
T ss_dssp HHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHHH
T ss_pred hHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHHH
Confidence 577899999999999975 1 12 1688999999999999996444433 2222322
Q ss_pred HH---HHHhhhccccCCCCceEEEEEecCcccccc---C------CC-CC-------hhhHHHHHHHHHHHHHhcCCCCc
Q 048257 92 KE---WVKANVTKYTNKGGVNIKFVAVGNEPFLKA---Y------NG-SH-------INTTFPALKNIQNALNDAGVGDT 151 (510)
Q Consensus 92 ~~---Wv~~nv~~y~p~~~~~I~~I~VGNEvl~~~---~------~~-~~-------~~~Lvpam~ni~~aL~~~gl~~~ 151 (510)
+. ..+.-+..| +++|+..+.=||+..-. + .+ .. ...++-|-..+.+++++..-+
T Consensus 141 ~~F~~Ya~~~~~~~----gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~-- 214 (455)
T PF00232_consen 141 DWFARYAEFVFERF----GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPD-- 214 (455)
T ss_dssp HHHHHHHHHHHHHH----TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCT--
T ss_pred HHHHHHHHHHHHHh----CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccc--
Confidence 21 122223333 36788999999985421 1 00 11 223555555566667776643
Q ss_pred eEEecccccccccCCCCCCCCCC---------------------ccccchhHHHHH----------HHHHHHHhcCCCce
Q 048257 152 IKATVPFNADVYDSPDKNPYPSA---------------------GKFRTDIFATMK----------EIVDFLAENKAPFI 200 (510)
Q Consensus 152 IkVsT~~~~~vl~~s~~~~pPS~---------------------g~F~~d~~~~~~----------~~ldFL~~t~sp~~ 200 (510)
.||+..+.......-. .-|+.. |.|..++...+. +-+..|..+-+.++
T Consensus 215 ~~IGi~~~~~~~~P~~-~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlG 293 (455)
T PF00232_consen 215 GKIGIALNFSPFYPLS-PSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLG 293 (455)
T ss_dssp SEEEEEEEEEEEEESS-SSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEE
T ss_pred eEEeccccccccCCCC-ccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhh
Confidence 5666665543221100 001100 011000000000 01223455678888
Q ss_pred eecCccccccCCC--CCccccccccCCCceeecC----CCccccchHHHhhHHHHHHHHHcCCCCCcEEecccccCCCCC
Q 048257 201 VNIYPFLSLYGND--DFPVDYAFFDGGKSIVDSV----TGNKYTDVFDANYDTCVSALKAAGHGDMPVVVGEIGWPTDGD 274 (510)
Q Consensus 201 vNiyPyf~~~~~~--~i~l~~AlF~~~~~~v~D~----~~~~Y~n~fda~~Dav~~A~~k~g~~~~~vvVtETGWPS~G~ 274 (510)
+|-|.=.--...+ .....+.....-. ...++ +...+.-.=..+.+.+.. |.+ -|+++||+|+|.|++....
T Consensus 294 iNYYt~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~t~~gw~i~P~Gl~~~L~~-l~~-~Y~~~pI~ITENG~~~~~~ 370 (455)
T PF00232_consen 294 INYYTSRYVRADPNPSSPPSYDSDAPFG-QPYNPGGPTTDWGWEIYPEGLRDVLRY-LKD-RYGNPPIYITENGIGDPDE 370 (455)
T ss_dssp EEESEEEEEEESSSSTSSTTHEEEESEE-EECETSSEBCTTSTBBETHHHHHHHHH-HHH-HHTSSEEEEEEE---EETT
T ss_pred hccccceeeccCccccccccccCCcccc-ccccccccccccCcccccchHhhhhhh-hcc-ccCCCcEEEeccccccccc
Confidence 9977433222222 1111111100000 00000 111111001222233222 211 2678999999999988764
Q ss_pred CC-------CCHHHHHHHHHhhhhhhhccCCCCCCCCCcc-eEEEEeecccC-ccCCCCCCccceeeeeecCC
Q 048257 275 KM-------ANTANAFRYYSGLLPKLAADKGTPLRPGSYI-EVYMFSLFDED-SKSIDPGNFEKHWGIFTYDG 338 (510)
Q Consensus 275 ~~-------As~~na~~y~~~lv~~~~~~~GTP~rpg~~~-~~yiF~lFDE~-~K~~~~g~~E~~wGlf~~d~ 338 (510)
.. --++--+.++..+.+.+.. |+++ -+|..++.|-- |.. +..+.|||++-|.
T Consensus 371 ~~~~~v~D~~Ri~yl~~hl~~v~~Ai~d--------Gv~V~GY~~WSl~Dn~Ew~~----Gy~~rfGl~~VD~ 431 (455)
T PF00232_consen 371 VDDGKVDDDYRIDYLQDHLNQVLKAIED--------GVNVRGYFAWSLLDNFEWAE----GYKKRFGLVYVDF 431 (455)
T ss_dssp CTTSHBSHHHHHHHHHHHHHHHHHHHHT--------T-EEEEEEEETSB---BGGG----GGGSE--SEEEET
T ss_pred ccccCcCcHHHHHHHHHHHHHHHhhhcc--------CCCeeeEeeecccccccccc----CccCccCceEEcC
Confidence 21 1223345555555555532 3333 46778888754 432 4789999999883
No 18
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=65.72 E-value=33 Score=37.87 Aligned_cols=187 Identities=21% Similarity=0.256 Sum_probs=100.0
Q ss_pred HHHHHhhhccccCCCCceEEEEEecCccccccCCCCChhhHHHHHHHHHHHHHhcCCCCceEEecccccccccCCCCCCC
Q 048257 92 KEWVKANVTKYTNKGGVNIKFVAVGNEPFLKAYNGSHINTTFPALKNIQNALNDAGVGDTIKATVPFNADVYDSPDKNPY 171 (510)
Q Consensus 92 ~~Wv~~nv~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Lvpam~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~p 171 (510)
...|..-|.+|- ....|.+-+.-||.+.+.+ .....++-..+.+.+.++..+-+.-|.|+-+.+. |. +|-
T Consensus 123 kkyvedlVk~yk--~~ptI~gw~l~Ne~lv~~p--~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~sp--~~----~~~ 192 (587)
T COG3934 123 KKYVEDLVKPYK--LDPTIAGWALRNEPLVEAP--ISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPASP--WP----QYA 192 (587)
T ss_pred HHHHHHHhhhhc--cChHHHHHHhcCCcccccc--CChhHHHHHHHHHHHHhhccCCCCeeecCCcCCc--cc----ccC
Confidence 456666677762 3456778888999776533 3577888888888888888776544555544332 22 133
Q ss_pred CCCccccchhHHHHHHHHHHHHhcCCCceeecCccccccCCCCCccccccccCCCceeecCCCccccchHHHhhHHHHHH
Q 048257 172 PSAGKFRTDIFATMKEIVDFLAENKAPFIVNIYPFLSLYGNDDFPVDYAFFDGGKSIVDSVTGNKYTDVFDANYDTCVSA 251 (510)
Q Consensus 172 PS~g~F~~d~~~~~~~~ldFL~~t~sp~~vNiyPyf~~~~~~~i~l~~AlF~~~~~~v~D~~~~~Y~n~fda~~Dav~~A 251 (510)
|-++.|. +|| -.-++||+|.. ++-+...+..+.+ | +|--
T Consensus 193 pyN~r~~----------vDy-------a~~hLY~hyd~--sl~~r~s~~yg~~------------~-------l~i~--- 231 (587)
T COG3934 193 PYNARFY----------VDY-------AANHLYRHYDT--SLVSRVSTVYGKP------------Y-------LDIP--- 231 (587)
T ss_pred Cccccee----------ecc-------ccchhhhhccC--Chhheeeeeecch------------h-------hccc---
Confidence 4444443 222 25788886653 2211111111110 0 1100
Q ss_pred HHHcCCCCCcEEecccccCCCCCCCCCHHHHHHHHHhhhhhhhccCCCCCCCCCcceEEEEeecccCccCCCCC---Ccc
Q 048257 252 LKAAGHGDMPVVVGEIGWPTDGDKMANTANAFRYYSGLLPKLAADKGTPLRPGSYIEVYMFSLFDEDSKSIDPG---NFE 328 (510)
Q Consensus 252 ~~k~g~~~~~vvVtETGWPS~G~~~As~~na~~y~~~lv~~~~~~~GTP~rpg~~~~~yiF~lFDE~~K~~~~g---~~E 328 (510)
.-+ +-+||+.-|-|-|++=.. +|.+.|.-- +..+....| -| --...|+=|-+--.. .|. .-|
T Consensus 232 -~~~--g~~pV~leefGfsta~g~----e~s~ayfiw-~~lal~~gg----dG--aLiwclsdf~~gsdd-~ey~w~p~e 296 (587)
T COG3934 232 -TIM--GWQPVNLEEFGFSTAFGQ----ENSPAYFIW-IRLALDTGG----DG--ALIWCLSDFHLGSDD-SEYTWGPME 296 (587)
T ss_pred -hhc--ccceeeccccCCcccccc----cccchhhhh-hhhHHhhcC----Cc--eEEEEecCCccCCCC-CCCcccccc
Confidence 011 348999999999987443 333333221 111221111 02 233345544321111 122 357
Q ss_pred ceeeeeecCCCCcccc
Q 048257 329 KHWGIFTYDGQPKFPM 344 (510)
Q Consensus 329 ~~wGlf~~d~~~ky~l 344 (510)
-.|||...|+++|+.+
T Consensus 297 l~fgiIradgpek~~a 312 (587)
T COG3934 297 LEFGIIRADGPEKIDA 312 (587)
T ss_pred ceeeeecCCCchhhhH
Confidence 8899999999999975
No 19
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=65.34 E-value=1.8e+02 Score=32.03 Aligned_cols=246 Identities=18% Similarity=0.314 Sum_probs=108.3
Q ss_pred HHHhCCCCEEEEccC--C---------------------hHHHHHhhcCCCEEEEEecc--chhcc-----c--------
Q 048257 44 LLKDNGILKVKLFDA--D---------------------NTILDALAGTDIEVMLAVSN--QELKT-----M-------- 85 (510)
Q Consensus 44 llk~~~i~~VRlY~~--d---------------------~~vL~A~a~tgi~V~vgV~n--~~i~~-----~-------- 85 (510)
+.+..||+.||+.+. | -.++..+...||+-+|-+.- ..+.. +
T Consensus 48 ~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~~~~~~~~~~~p 127 (486)
T PF01229_consen 48 LQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQTVFWYKGNISP 127 (486)
T ss_dssp HHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--EETTTTEE-S-
T ss_pred HHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCCccccccCCcCC
Confidence 334579999999842 1 14788888999997766631 11110 0
Q ss_pred -CCHHHHH----HHHHhhhccccCCCCceEE--EEEecCccccccC-CCCChhhHHHHHHHHHHHHHhcCCCCceEEecc
Q 048257 86 -TDFDKAK----EWVKANVTKYTNKGGVNIK--FVAVGNEPFLKAY-NGSHINTTFPALKNIQNALNDAGVGDTIKATVP 157 (510)
Q Consensus 86 -~~~~~A~----~Wv~~nv~~y~p~~~~~I~--~I~VGNEvl~~~~-~~~~~~~Lvpam~ni~~aL~~~gl~~~IkVsT~ 157 (510)
.+...-. ++++--+..| +...|+ ..=|=||+=.... ......+-....+.+..+|++.. ..+||+-|
T Consensus 128 p~~~~~W~~lv~~~~~h~~~RY---G~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vGGp 202 (486)
T PF01229_consen 128 PKDYEKWRDLVRAFARHYIDRY---GIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVGGP 202 (486)
T ss_dssp BS-HHHHHHHHHHHHHHHHHHH---HHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHhhc---CCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCcccCc
Confidence 1112212 2222223333 111222 4557888644311 11224456677777888888876 35888866
Q ss_pred cccccccCCCCCCCCCCccccchhHHHHHHHHHHHHhcCCC---ceeecCccccccCCCCCccccccccCCCceeecCCC
Q 048257 158 FNADVYDSPDKNPYPSAGKFRTDIFATMKEIVDFLAENKAP---FIVNIYPFLSLYGNDDFPVDYAFFDGGKSIVDSVTG 234 (510)
Q Consensus 158 ~~~~vl~~s~~~~pPS~g~F~~d~~~~~~~~ldFL~~t~sp---~~vNiyPyf~~~~~~~i~l~~AlF~~~~~~v~D~~~ 234 (510)
-. .+. + ...+...++|+.+.+.| +..+.||+-.... +. . .... .-
T Consensus 203 ~~--~~~------------~----~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~---~~--------~--~~~~-~~ 250 (486)
T PF01229_consen 203 AF--AWA------------Y----DEWCEDFLEFCKGNNCPLDFISFHSYGTDSAED---IN--------E--NMYE-RI 250 (486)
T ss_dssp EE--ETT-----------------THHHHHHHHHHHHCT---SEEEEEEE-BESESE----S--------S---EEE-EB
T ss_pred cc--ccc------------H----HHHHHHHHHHHhcCCCCCCEEEEEecccccccc---cc--------h--hHHh-hh
Confidence 10 000 0 13456677887766533 2455555321100 00 0 0000 00
Q ss_pred ccccchHHHhhHHHHHHHHHcCCCCCcEEecccccCCCCCC----CCCHHHHHHHHHhhhhhhhccCCCCCCCCCcceEE
Q 048257 235 NKYTDVFDANYDTCVSALKAAGHGDMPVVVGEIGWPTDGDK----MANTANAFRYYSGLLPKLAADKGTPLRPGSYIEVY 310 (510)
Q Consensus 235 ~~Y~n~fda~~Dav~~A~~k~g~~~~~vvVtETGWPS~G~~----~As~~na~~y~~~lv~~~~~~~GTP~rpg~~~~~y 310 (510)
.....+++. +.-+...+...+++++++.++| |.+.-.. .-+.-+|+-..+++++.... .++.|
T Consensus 251 ~~~~~~~~~-~~~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~----------~l~~~ 317 (486)
T PF01229_consen 251 EDSRRLFPE-LKETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDGA----------FLDSF 317 (486)
T ss_dssp --HHHHHHH-HHHHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG----------T-SEE
T ss_pred hhHHHHHHH-HHHHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhhh----------hhhhh
Confidence 001112222 2222233455678999999999 8876543 35666777666666665432 12322
Q ss_pred ---EE-eecccCccCCCCCCccceeeeeecCCCCc
Q 048257 311 ---MF-SLFDEDSKSIDPGNFEKHWGIFTYDGQPK 341 (510)
Q Consensus 311 ---iF-~lFDE~~K~~~~g~~E~~wGlf~~d~~~k 341 (510)
.| +.|.|+--+ ...+-.-|||+..+|-+|
T Consensus 318 sywt~sD~Fee~~~~--~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 318 SYWTFSDRFEENGTP--RKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp EES-SBS---TTSS---SSSSSS-S-SEECCCEE-
T ss_pred hccchhhhhhccCCC--CCceecchhhhhccCCCc
Confidence 22 233333221 113456699999998555
No 20
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=64.55 E-value=7.9 Score=36.61 Aligned_cols=38 Identities=29% Similarity=0.451 Sum_probs=27.8
Q ss_pred HHHHHHhCCCCEEEEccCChHHHHHhhcCCCEEEEEec
Q 048257 41 TVKLLKDNGILKVKLFDADNTILDALAGTDIEVMLAVS 78 (510)
Q Consensus 41 vv~llk~~~i~~VRlY~~d~~vL~A~a~tgi~V~vgV~ 78 (510)
-+|+|+.+|+++|||...+|.-+.++.+.||+|.=-||
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 47899999999999999999999999999999975554
No 21
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.46 E-value=23 Score=37.67 Aligned_cols=57 Identities=25% Similarity=0.458 Sum_probs=37.2
Q ss_pred ccchHHHhhHHHHHHHHHcCCCCCcEEecccccCCCCCC------CCCHHHHHHHHHhhhhhhhcc
Q 048257 237 YTDVFDANYDTCVSALKAAGHGDMPVVVGEIGWPTDGDK------MANTANAFRYYSGLLPKLAAD 296 (510)
Q Consensus 237 Y~n~fda~~Dav~~A~~k~g~~~~~vvVtETGWPS~G~~------~As~~na~~y~~~lv~~~~~~ 296 (510)
|.|-|++-+--.....--.|++.++|+.+ |||.|.. ..|...++..+.++++.++..
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhC
Confidence 66666655433322233467788888885 9999985 256666677777777776653
No 22
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=56.75 E-value=16 Score=35.26 Aligned_cols=33 Identities=24% Similarity=0.503 Sum_probs=30.6
Q ss_pred HHHHHhCCCCEEEEccCChHHHHHhhcCCCEEE
Q 048257 42 VKLLKDNGILKVKLFDADNTILDALAGTDIEVM 74 (510)
Q Consensus 42 v~llk~~~i~~VRlY~~d~~vL~A~a~tgi~V~ 74 (510)
+|+|+.+|+++|||....+.-+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 789999999999999998888889999999987
No 23
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=55.92 E-value=35 Score=26.54 Aligned_cols=44 Identities=20% Similarity=0.324 Sum_probs=35.4
Q ss_pred CChHHHHHHHHhCCCCEEEEccCC-----hHHHHHhhcCCCEEEEEecc
Q 048257 36 LPPKTTVKLLKDNGILKVKLFDAD-----NTILDALAGTDIEVMLAVSN 79 (510)
Q Consensus 36 ps~~~vv~llk~~~i~~VRlY~~d-----~~vL~A~a~tgi~V~vgV~n 79 (510)
-+++++++..+++|++.|=|=|-+ ....+.++..||+|+.|+..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 457889999999999999888766 35566667889999999853
No 24
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=55.55 E-value=17 Score=35.25 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=31.8
Q ss_pred HHHHHhCCCCEEEEccCChHHHHHhhcCCCEEEEEe
Q 048257 42 VKLLKDNGILKVKLFDADNTILDALAGTDIEVMLAV 77 (510)
Q Consensus 42 v~llk~~~i~~VRlY~~d~~vL~A~a~tgi~V~vgV 77 (510)
+|+|+.+|+++|||....+.-+.++.+.||+|.=-+
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~~~~ 169 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIVERV 169 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 789999999999999998888889999999998333
No 25
>PRK09936 hypothetical protein; Provisional
Probab=54.81 E-value=88 Score=32.43 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=40.8
Q ss_pred eeEEecCCCCC-CCChHHHH---HHHHhCCCCEEEEc-----cCC--------hHHHHHhhcCCCEEEEEeccc
Q 048257 24 LGVNWGTVASH-QLPPKTTV---KLLKDNGILKVKLF-----DAD--------NTILDALAGTDIEVMLAVSNQ 80 (510)
Q Consensus 24 ~GvnYg~~~~n-~ps~~~vv---~llk~~~i~~VRlY-----~~d--------~~vL~A~a~tgi~V~vgV~n~ 80 (510)
-|+=|-|...| --++++-- +.++..|++.+=+= +.| ...|+++...||+|.||++-|
T Consensus 22 ~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~D 95 (296)
T PRK09936 22 KGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYAD 95 (296)
T ss_pred ccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCC
Confidence 46779999877 45666554 45566898766542 223 267888889999999999865
No 26
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=50.15 E-value=19 Score=38.48 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=30.4
Q ss_pred HHHHHHhCCCCEEEEccCChHHHHHhhcCCCEEEE
Q 048257 41 TVKLLKDNGILKVKLFDADNTILDALAGTDIEVML 75 (510)
Q Consensus 41 vv~llk~~~i~~VRlY~~d~~vL~A~a~tgi~V~v 75 (510)
-+|+|+.+||++|||. .+|.-+.++.+.||+|.=
T Consensus 330 gAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~ 363 (369)
T PRK12485 330 GAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVE 363 (369)
T ss_pred HHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEE
Confidence 3789999999999999 679889999999999973
No 27
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=48.45 E-value=1e+02 Score=33.10 Aligned_cols=60 Identities=7% Similarity=0.069 Sum_probs=35.3
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCceEEecccccccccCCCCCCCCCCccccchhHHHHHHHHHHHHhcCCCceeecCccc
Q 048257 128 HINTTFPALKNIQNALNDAGVGDTIKATVPFNADVYDSPDKNPYPSAGKFRTDIFATMKEIVDFLAENKAPFIVNIYPFL 207 (510)
Q Consensus 128 ~~~~Lvpam~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~pPS~g~F~~d~~~~~~~~ldFL~~t~sp~~vNiyPyf 207 (510)
.......+++.+|+.. .| +.+.+..-++ || .+-.+.+...++|+.+.+ +-.+++|||-
T Consensus 271 ~~~~~~~~v~~l~~~~--~g----i~i~~~~IvG--------~P-------gET~ed~~~tl~~i~~~~-~~~~~~~~~s 328 (414)
T TIGR01579 271 TRDDFLKLVNKLRSVR--PD----YAFGTDIIVG--------FP-------GESEEDFQETLRMVKEIE-FSHLHIFPYS 328 (414)
T ss_pred CHHHHHHHHHHHHHhC--CC----CeeeeeEEEE--------CC-------CCCHHHHHHHHHHHHhCC-CCEEEeeecC
Confidence 4567777777777632 22 4455443222 12 122356788999998775 4567888766
Q ss_pred cc
Q 048257 208 SL 209 (510)
Q Consensus 208 ~~ 209 (510)
-+
T Consensus 329 p~ 330 (414)
T TIGR01579 329 AR 330 (414)
T ss_pred CC
Confidence 54
No 28
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=45.72 E-value=30 Score=33.39 Aligned_cols=36 Identities=39% Similarity=0.590 Sum_probs=31.6
Q ss_pred HHHHHhCCCCEEEEccCChHHHHHhhcCCCEEEEEe
Q 048257 42 VKLLKDNGILKVKLFDADNTILDALAGTDIEVMLAV 77 (510)
Q Consensus 42 v~llk~~~i~~VRlY~~d~~vL~A~a~tgi~V~vgV 77 (510)
+|+|+.+|++++||....+.-+.++.+.||+|+=-+
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVERV 168 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 789999999999999988878889999999998333
No 29
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=45.49 E-value=25 Score=37.57 Aligned_cols=35 Identities=26% Similarity=0.441 Sum_probs=31.3
Q ss_pred HHHHHhCCCCEEEEccCChHHHHHhhcCCCEEEEEe
Q 048257 42 VKLLKDNGILKVKLFDADNTILDALAGTDIEVMLAV 77 (510)
Q Consensus 42 v~llk~~~i~~VRlY~~d~~vL~A~a~tgi~V~vgV 77 (510)
+|+|+.+|+++|||.. +|.-+.+|.+.||+|.=-+
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEe
Confidence 7899999999999998 8999999999999997433
No 30
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=44.74 E-value=1.7e+02 Score=31.73 Aligned_cols=59 Identities=7% Similarity=0.030 Sum_probs=33.6
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCceEEecccccccccCCCCCCCCCCccccchhHHHHHHHHHHHHhcCCCceeecCcc
Q 048257 127 SHINTTFPALKNIQNALNDAGVGDTIKATVPFNADVYDSPDKNPYPSAGKFRTDIFATMKEIVDFLAENKAPFIVNIYPF 206 (510)
Q Consensus 127 ~~~~~Lvpam~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~pPS~g~F~~d~~~~~~~~ldFL~~t~sp~~vNiyPy 206 (510)
....+++.+++.+|++ +. .+.+++..-.+. | . +-.+.+...++|+.+.+ +-.+++|+|
T Consensus 269 ~~~~~~~~~v~~lr~~----~~--~i~i~~d~IvG~--------P-g------Et~ed~~~tl~~i~~l~-~~~i~~f~y 326 (440)
T PRK14334 269 YRREKYLERIAEIREA----LP--DVVLSTDIIVGF--------P-G------ETEEDFQETLSLYDEVG-YDSAYMFIY 326 (440)
T ss_pred CCHHHHHHHHHHHHHh----CC--CcEEEEeEEEEC--------C-C------CCHHHHHHHHHHHHhcC-CCEeeeeEe
Confidence 3466777777777764 32 244554432221 2 1 11246778889988765 445777765
Q ss_pred c
Q 048257 207 L 207 (510)
Q Consensus 207 f 207 (510)
-
T Consensus 327 s 327 (440)
T PRK14334 327 S 327 (440)
T ss_pred e
Confidence 4
No 31
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=43.12 E-value=34 Score=38.31 Aligned_cols=6 Identities=33% Similarity=0.811 Sum_probs=2.8
Q ss_pred chhhhh
Q 048257 494 ASLVGL 499 (510)
Q Consensus 494 ~~~~g~ 499 (510)
++|||+
T Consensus 182 ~~~~~~ 187 (782)
T PF07218_consen 182 SSVAGI 187 (782)
T ss_pred cccccc
Confidence 335553
No 32
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=42.48 E-value=31 Score=36.14 Aligned_cols=84 Identities=18% Similarity=0.240 Sum_probs=35.4
Q ss_pred HHHH-hhcCCCEEEEEeccchhcc--cCCHHHHHHHHHhhhccccC---CCCceEEEEEecCccccccCC-CCChhhHHH
Q 048257 62 ILDA-LAGTDIEVMLAVSNQELKT--MTDFDKAKEWVKANVTKYTN---KGGVNIKFVAVGNEPFLKAYN-GSHINTTFP 134 (510)
Q Consensus 62 vL~A-~a~tgi~V~vgV~n~~i~~--~~~~~~A~~Wv~~nv~~y~p---~~~~~I~~I~VGNEvl~~~~~-~~~~~~Lvp 134 (510)
.|.. +..+|++|+.|+.- .+.. +.+....-.|=-+|-+.++. ..+-+|.+-=.|||.-..+-. .-.+.++..
T Consensus 113 ~l~~F~~~tG~~liFgLNA-L~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyak 191 (319)
T PF03662_consen 113 ELNNFAQKTGLKLIFGLNA-LLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAK 191 (319)
T ss_dssp HHHHHHHHHT-EEEEEE-T-TTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHH
T ss_pred HHHHHHHHhCCEEEEEecc-cCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHH
Confidence 4444 45799999999852 1110 01112345676666444321 122357778899996432211 123677888
Q ss_pred HHHHHHHHHHhc
Q 048257 135 ALKNIQNALNDA 146 (510)
Q Consensus 135 am~ni~~aL~~~ 146 (510)
....+|+.|+..
T Consensus 192 D~~~Lr~il~~i 203 (319)
T PF03662_consen 192 DFIQLRKILNEI 203 (319)
T ss_dssp HH---HHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877653
No 33
>PLN03059 beta-galactosidase; Provisional
Probab=42.08 E-value=4.3e+02 Score=31.53 Aligned_cols=115 Identities=12% Similarity=0.058 Sum_probs=69.7
Q ss_pred HHHHHHHhCCCCEEEEccC-----------C-------hHHHHHhhcCCCEEEEEecc---------------chhcc--
Q 048257 40 TTVKLLKDNGILKVKLFDA-----------D-------NTILDALAGTDIEVMLAVSN---------------QELKT-- 84 (510)
Q Consensus 40 ~vv~llk~~~i~~VRlY~~-----------d-------~~vL~A~a~tgi~V~vgV~n---------------~~i~~-- 84 (510)
+..+.+|+.|++.|-+|-. | ..-|+.+++.||.|+|=... -..+.
T Consensus 63 d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~ 142 (840)
T PLN03059 63 DLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIE 142 (840)
T ss_pred HHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcc
Confidence 4566778899999999832 1 24667778999999985421 11122
Q ss_pred c-C-CH---HHHHHHHHhhhcc-----ccCCCCceEEEEEecCccccccCCCCChhhHHHHHHHHHHHHHhcCCCCceEE
Q 048257 85 M-T-DF---DKAKEWVKANVTK-----YTNKGGVNIKFVAVGNEPFLKAYNGSHINTTFPALKNIQNALNDAGVGDTIKA 154 (510)
Q Consensus 85 ~-~-~~---~~A~~Wv~~nv~~-----y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Lvpam~ni~~aL~~~gl~~~IkV 154 (510)
+ + ++ .+.++|+..-+.. ++-..+..|..+=|-||.= .+....-..--.+|+.+++.++++|++ |+.
T Consensus 143 ~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYG--s~~~~~~~~d~~Yl~~l~~~~~~~Gi~--VPl 218 (840)
T PLN03059 143 FRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYG--PVEWEIGAPGKAYTKWAADMAVKLGTG--VPW 218 (840)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccccc--ceecccCcchHHHHHHHHHHHHHcCCC--cce
Confidence 2 2 22 3456776554322 2112345788999999952 221111122367999999999999985 655
Q ss_pred eccc
Q 048257 155 TVPF 158 (510)
Q Consensus 155 sT~~ 158 (510)
-|.+
T Consensus 219 ~t~d 222 (840)
T PLN03059 219 VMCK 222 (840)
T ss_pred EECC
Confidence 4443
No 34
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=41.70 E-value=33 Score=36.29 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=31.0
Q ss_pred HHHHHHhCCCCEEEEccCC-hHHHHHhhcCCCEEE
Q 048257 41 TVKLLKDNGILKVKLFDAD-NTILDALAGTDIEVM 74 (510)
Q Consensus 41 vv~llk~~~i~~VRlY~~d-~~vL~A~a~tgi~V~ 74 (510)
.+|+|+.+|+++|||...+ |.-+.++.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 4789999999999999998 888889999999986
No 35
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=39.95 E-value=37 Score=37.28 Aligned_cols=38 Identities=21% Similarity=0.389 Sum_probs=33.3
Q ss_pred HHHHHHhCCCCEEEEccCChHHHHHhhcCCCEEEEEec
Q 048257 41 TVKLLKDNGILKVKLFDADNTILDALAGTDIEVMLAVS 78 (510)
Q Consensus 41 vv~llk~~~i~~VRlY~~d~~vL~A~a~tgi~V~vgV~ 78 (510)
-+|+|+.+|+++|||...+|.-+.++.+.||+|.=-++
T Consensus 372 gAqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 372 GAQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 36899999999999999999999999999999984444
No 36
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=39.59 E-value=38 Score=36.45 Aligned_cols=38 Identities=34% Similarity=0.419 Sum_probs=33.7
Q ss_pred HHHHHHhCCCCEEEEccCChHHHHHhhcCCCEEEEEec
Q 048257 41 TVKLLKDNGILKVKLFDADNTILDALAGTDIEVMLAVS 78 (510)
Q Consensus 41 vv~llk~~~i~~VRlY~~d~~vL~A~a~tgi~V~vgV~ 78 (510)
.+|+|+..|+++|||...+|.-+.++.+.||+|.=-++
T Consensus 319 gAqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 319 AFQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 37899999999999999999999999999999985554
No 37
>PRK08815 GTP cyclohydrolase; Provisional
Probab=39.29 E-value=39 Score=36.26 Aligned_cols=37 Identities=30% Similarity=0.433 Sum_probs=33.0
Q ss_pred HHHHHhCCCCEEEEccCChHHHHHhhcCCCEEEEEec
Q 048257 42 VKLLKDNGILKVKLFDADNTILDALAGTDIEVMLAVS 78 (510)
Q Consensus 42 v~llk~~~i~~VRlY~~d~~vL~A~a~tgi~V~vgV~ 78 (510)
+|+|+..|+++|||...++.-+.++.+.||+|.=-++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6899999999999999999888999999999985454
No 38
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=39.11 E-value=38 Score=38.04 Aligned_cols=38 Identities=26% Similarity=0.458 Sum_probs=34.0
Q ss_pred HHHHHHhCCCCEEEEccCChHHHHHhhcCCCEEEEEec
Q 048257 41 TVKLLKDNGILKVKLFDADNTILDALAGTDIEVMLAVS 78 (510)
Q Consensus 41 vv~llk~~~i~~VRlY~~d~~vL~A~a~tgi~V~vgV~ 78 (510)
.+|+|+..||++|||...+|.-+.++.+.||+|.=-+|
T Consensus 342 gAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 342 GAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 37899999999999999999999999999999985554
No 39
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=38.82 E-value=40 Score=36.46 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=33.2
Q ss_pred HHHHHHhCCCCEEEEccCChHHHHHhhcCCCEEEEEec
Q 048257 41 TVKLLKDNGILKVKLFDADNTILDALAGTDIEVMLAVS 78 (510)
Q Consensus 41 vv~llk~~~i~~VRlY~~d~~vL~A~a~tgi~V~vgV~ 78 (510)
.+|+|+..|+++|||...+|.-+.++.+.||+|.=-++
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 47899999999999999999989999999999984443
No 40
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=38.67 E-value=2.6e+02 Score=31.03 Aligned_cols=58 Identities=9% Similarity=0.074 Sum_probs=33.1
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCceEEecccccccccCCCCCCCCCCccccchhHHHHHHHHHHHHhcCCCceeecCcc
Q 048257 127 SHINTTFPALKNIQNALNDAGVGDTIKATVPFNADVYDSPDKNPYPSAGKFRTDIFATMKEIVDFLAENKAPFIVNIYPF 206 (510)
Q Consensus 127 ~~~~~Lvpam~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~pPS~g~F~~d~~~~~~~~ldFL~~t~sp~~vNiyPy 206 (510)
....+...+++.+|++. ..|.|++..-++ || .+-.+.+...++|+.+.+ +-.+++|+|
T Consensus 289 ~t~~~~~~~v~~lr~~~------~~i~i~~~~IvG--------fP-------gET~edf~~Tl~~i~~~~-~~~~~~f~~ 346 (502)
T PRK14326 289 YRSERFLGILEKVRAAM------PDAAITTDIIVG--------FP-------GETEEDFQATLDVVREAR-FSSAFTFQY 346 (502)
T ss_pred CCHHHHHHHHHHHHHhC------CCCeEEEEEEEE--------CC-------CCCHHHHHHHHHHHHHcC-CCEEEEEee
Confidence 34667777777777642 126666543222 12 122356788999997764 223566664
No 41
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=37.09 E-value=84 Score=30.46 Aligned_cols=91 Identities=16% Similarity=0.169 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhcCCCCceEEecccccccccCCCCCCCCCCccccchhHHHHHHHHHHHHhcCCCceeecC-ccccccC
Q 048257 133 FPALKNIQNALNDAGVGDTIKATVPFNADVYDSPDKNPYPSAGKFRTDIFATMKEIVDFLAENKAPFIVNIY-PFLSLYG 211 (510)
Q Consensus 133 vpam~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~pPS~g~F~~d~~~~~~~~ldFL~~t~sp~~vNiy-Pyf~~~~ 211 (510)
-.+++.+.+.+...|+.+ ||+....... .| +-.....++++.+.+.+-|+++++- +.+...
T Consensus 84 ~~~~~~l~~~~~~~g~~G-v~l~~~~~~~---------~~-------~~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~~- 145 (273)
T PF04909_consen 84 EDAVEELERALQELGFRG-VKLHPDLGGF---------DP-------DDPRLDDPIFEAAEELGLPVLIHTGMTGFPDA- 145 (273)
T ss_dssp HHHHHHHHHHHHTTTESE-EEEESSETTC---------CT-------TSGHCHHHHHHHHHHHT-EEEEEESHTHHHHH-
T ss_pred hhHHHHHHHhccccceee-eEecCCCCcc---------cc-------ccHHHHHHHHHHHHhhccceeeeccccchhhh-
Confidence 368888999999999876 8876543211 11 1011225889999999988887743 111100
Q ss_pred CCCCccccccccCCCceeecCCCccccchHHHhhHHHHHHHHHcCCCCCcEEecccccC
Q 048257 212 NDDFPVDYAFFDGGKSIVDSVTGNKYTDVFDANYDTCVSALKAAGHGDMPVVVGEIGWP 270 (510)
Q Consensus 212 ~~~i~l~~AlF~~~~~~v~D~~~~~Y~n~fda~~Dav~~A~~k~g~~~~~vvVtETGWP 270 (510)
..-..+...+...+++ +|+++|++.+.|+|
T Consensus 146 ---------------------------~~~~~~~~~~~~~~~~--~P~l~ii~~H~G~~ 175 (273)
T PF04909_consen 146 ---------------------------PSDPADPEELEELLER--FPDLRIILAHLGGP 175 (273)
T ss_dssp ---------------------------HHHHHHHHHHTTHHHH--STTSEEEESGGGTT
T ss_pred ---------------------------hHHHHHHHHHHHHHHH--hcCCeEEEecCccc
Confidence 0001122222233444 79999999999999
No 42
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=36.92 E-value=2e+02 Score=30.17 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=48.4
Q ss_pred CeeeEEecCCCCCCCChHHHHHHHHhCCCCEEEEccCChHHHHHhhcCCCEEEEEeccchhcccCCHHHHHHHHHhhhcc
Q 048257 22 NGLGVNWGTVASHQLPPKTTVKLLKDNGILKVKLFDADNTILDALAGTDIEVMLAVSNQELKTMTDFDKAKEWVKANVTK 101 (510)
Q Consensus 22 ~~~GvnYg~~~~n~ps~~~vv~llk~~~i~~VRlY~~d~~vL~A~a~tgi~V~vgV~n~~i~~~~~~~~A~~Wv~~nv~~ 101 (510)
..+|||.-...++ |..++.++.+...+.+.|=+..-+|..++.++..||+|+.-|++ ...|+.+++.-+
T Consensus 56 kPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s--------~~~A~~a~~~Ga-- 124 (320)
T cd04743 56 KPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS--------PGLLKQFLENGA-- 124 (320)
T ss_pred CCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC--------HHHHHHHHHcCC--
Confidence 4577777443222 32345566665666777766655565578888899999988874 344555554322
Q ss_pred ccCCCCceEEEEEecCcc
Q 048257 102 YTNKGGVNIKFVAVGNEP 119 (510)
Q Consensus 102 y~p~~~~~I~~I~VGNEv 119 (510)
+. -|+-|.|.
T Consensus 125 ------D~--vVaqG~EA 134 (320)
T cd04743 125 ------RK--FIFEGREC 134 (320)
T ss_pred ------CE--EEEecCcC
Confidence 21 36679886
No 43
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=36.37 E-value=1.5e+02 Score=32.60 Aligned_cols=77 Identities=9% Similarity=0.189 Sum_probs=50.0
Q ss_pred HHHHHHHHhCCCCEEEEc---------c---CC-------hHHHHHhhcCCCEEEEEeccchhccc-C------CHHHHH
Q 048257 39 KTTVKLLKDNGILKVKLF---------D---AD-------NTILDALAGTDIEVMLAVSNQELKTM-T------DFDKAK 92 (510)
Q Consensus 39 ~~vv~llk~~~i~~VRlY---------~---~d-------~~vL~A~a~tgi~V~vgV~n~~i~~~-~------~~~~A~ 92 (510)
++.++||+.+|++.-|+= + .| .++|.++...||+-+|.+.--+++.. . +++.++
T Consensus 57 ~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~GGW~n~~~v~ 136 (469)
T PRK13511 57 PEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSNGDWLNRENID 136 (469)
T ss_pred HHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHcCCCCCHHHHH
Confidence 678899999999888763 1 12 26889999999999999975555432 1 222211
Q ss_pred ---HHHHhhhccccCCCCceEEEEEecCccc
Q 048257 93 ---EWVKANVTKYTNKGGVNIKFVAVGNEPF 120 (510)
Q Consensus 93 ---~Wv~~nv~~y~p~~~~~I~~I~VGNEvl 120 (510)
+..+.-+..| ++ |+.-+-=||+.
T Consensus 137 ~F~~YA~~~~~~f----gd-Vk~W~T~NEP~ 162 (469)
T PRK13511 137 HFVRYAEFCFEEF----PE-VKYWTTFNEIG 162 (469)
T ss_pred HHHHHHHHHHHHh----CC-CCEEEEccchh
Confidence 1122223334 36 88888889974
No 44
>PLN02998 beta-glucosidase
Probab=35.83 E-value=93 Score=34.61 Aligned_cols=78 Identities=17% Similarity=0.265 Sum_probs=50.3
Q ss_pred HHHHHHHHhCCCCEEEEc--------c----CCh-------HHHHHhhcCCCEEEEEeccchhccc-C-------CHHHH
Q 048257 39 KTTVKLLKDNGILKVKLF--------D----ADN-------TILDALAGTDIEVMLAVSNQELKTM-T-------DFDKA 91 (510)
Q Consensus 39 ~~vv~llk~~~i~~VRlY--------~----~d~-------~vL~A~a~tgi~V~vgV~n~~i~~~-~-------~~~~A 91 (510)
++.+++|+++|++.-|+= + .|+ +++.++...||+-+|.+.--+++.. . +++.+
T Consensus 85 ~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v 164 (497)
T PLN02998 85 KEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIV 164 (497)
T ss_pred HHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHH
Confidence 467899999999888763 1 132 6889999999999999965454432 1 11211
Q ss_pred ---HHHHHhhhccccCCCCceEEEEEecCccc
Q 048257 92 ---KEWVKANVTKYTNKGGVNIKFVAVGNEPF 120 (510)
Q Consensus 92 ---~~Wv~~nv~~y~p~~~~~I~~I~VGNEvl 120 (510)
.+..+.-+..| +++|+.-+.=||+.
T Consensus 165 ~~F~~YA~~~~~~f----gdrVk~WiT~NEP~ 192 (497)
T PLN02998 165 RDFTAYADTCFKEF----GDRVSHWTTINEVN 192 (497)
T ss_pred HHHHHHHHHHHHHh----cCcCCEEEEccCcc
Confidence 11222223344 46788888888875
No 45
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=34.41 E-value=69 Score=25.66 Aligned_cols=42 Identities=10% Similarity=0.273 Sum_probs=27.8
Q ss_pred HHHHHHhhhccccCCCCceEEEEEecCccccccCC-CCChhhHHHHHHHHHHHHHhc
Q 048257 91 AKEWVKANVTKYTNKGGVNIKFVAVGNEPFLKAYN-GSHINTTFPALKNIQNALNDA 146 (510)
Q Consensus 91 A~~Wv~~nv~~y~p~~~~~I~~I~VGNEvl~~~~~-~~~~~~Lvpam~ni~~aL~~~ 146 (510)
-..|+++||.- |+|.++.++. ......|+|+++..++.++..
T Consensus 13 Li~WLedNi~~--------------es~iiFDNded~tdSa~llp~ie~a~~~~r~l 55 (65)
T PF06117_consen 13 LIAWLEDNIDC--------------ESDIIFDNDEDKTDSAALLPAIEQARADVRPL 55 (65)
T ss_pred HHHHHHcccCC--------------CCCeeecCCCcccchHHHHHHHHHHHHHHHHH
Confidence 45799988754 3444554322 223668999999999888653
No 46
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=34.34 E-value=3e+02 Score=30.11 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=34.1
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCceEEecccccccccCCCCCCCCCCccccchhHHHHHHHHHHHHhcCCCceeecCcc
Q 048257 127 SHINTTFPALKNIQNALNDAGVGDTIKATVPFNADVYDSPDKNPYPSAGKFRTDIFATMKEIVDFLAENKAPFIVNIYPF 206 (510)
Q Consensus 127 ~~~~~Lvpam~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~pPS~g~F~~d~~~~~~~~ldFL~~t~sp~~vNiyPy 206 (510)
....+.+.+++.+|+++ ..+.+.+..-++. | .+-.+.+...++|+.+.+ +-.+++++|
T Consensus 287 ~t~e~~~~~i~~lr~~~------pgi~i~~d~IvG~--------P-------gET~ed~~~ti~~l~~l~-~~~v~i~~y 344 (459)
T PRK14338 287 YTVARYRELIARIREAI------PDVSLTTDIIVGH--------P-------GETEEQFQRTYDLLEEIR-FDKVHIAAY 344 (459)
T ss_pred CCHHHHHHHHHHHHHhC------CCCEEEEEEEEEC--------C-------CCCHHHHHHHHHHHHHcC-CCEeEEEec
Confidence 34677777777777642 1255554432221 2 111356778899998765 334677776
Q ss_pred cc
Q 048257 207 LS 208 (510)
Q Consensus 207 f~ 208 (510)
--
T Consensus 345 sp 346 (459)
T PRK14338 345 SP 346 (459)
T ss_pred CC
Confidence 53
No 47
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=33.85 E-value=3.6e+02 Score=32.89 Aligned_cols=94 Identities=17% Similarity=0.147 Sum_probs=57.6
Q ss_pred eeEEecCCCC---CCCChHH---HHHHHHhCCCCEEEEcc--CChHHHHHhhcCCCEEEEEeccchh-----ccc-CCHH
Q 048257 24 LGVNWGTVAS---HQLPPKT---TVKLLKDNGILKVKLFD--ADNTILDALAGTDIEVMLAVSNQEL-----KTM-TDFD 89 (510)
Q Consensus 24 ~GvnYg~~~~---n~ps~~~---vv~llk~~~i~~VRlY~--~d~~vL~A~a~tgi~V~vgV~n~~i-----~~~-~~~~ 89 (510)
.|+|+-..-. .-.++++ .+++||+.|++.||+-. .++..+..+-..||-|+--++.+.. ..+ .++.
T Consensus 353 rGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp~ 432 (1027)
T PRK09525 353 RGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDPR 432 (1027)
T ss_pred EEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCHH
Confidence 5888753221 1244544 45678999999999954 3578899999999999877643211 112 1221
Q ss_pred ---HHHHHHHhhhccccCCCCceEEEEEecCcc
Q 048257 90 ---KAKEWVKANVTKYTNKGGVNIKFVAVGNEP 119 (510)
Q Consensus 90 ---~A~~Wv~~nv~~y~p~~~~~I~~I~VGNEv 119 (510)
...+-++..|.... .-..|..-++|||.
T Consensus 433 ~~~~~~~~~~~mV~Rdr--NHPSIi~WSlgNE~ 463 (1027)
T PRK09525 433 WLPAMSERVTRMVQRDR--NHPSIIIWSLGNES 463 (1027)
T ss_pred HHHHHHHHHHHHHHhCC--CCCEEEEEeCccCC
Confidence 22223444555542 12468888999996
No 48
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.28 E-value=3.1e+02 Score=29.78 Aligned_cols=76 Identities=9% Similarity=0.092 Sum_probs=40.5
Q ss_pred EEEEec----CccccccC-CCCChhhHHHHHHHHHHHHHhcCCCCceEEecccccccccCCCCCCCCCCccccchhHHHH
Q 048257 111 KFVAVG----NEPFLKAY-NGSHINTTFPALKNIQNALNDAGVGDTIKATVPFNADVYDSPDKNPYPSAGKFRTDIFATM 185 (510)
Q Consensus 111 ~~I~VG----NEvl~~~~-~~~~~~~Lvpam~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~pPS~g~F~~d~~~~~ 185 (510)
..|.+| ++.+++.- ........+.+++.+++++ ..+.+++..-++ || .+-.+.+
T Consensus 258 ~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~------~~i~i~~d~IvG--------~P-------gET~ed~ 316 (439)
T PRK14328 258 EHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNI------PDVAITTDIIVG--------FP-------GETEEDF 316 (439)
T ss_pred ceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhC------CCCEEEEEEEEE--------CC-------CCCHHHH
Confidence 356665 44443321 1234667777777777652 125555433222 12 1123567
Q ss_pred HHHHHHHHhcCCCceeecCcccc
Q 048257 186 KEIVDFLAENKAPFIVNIYPFLS 208 (510)
Q Consensus 186 ~~~ldFL~~t~sp~~vNiyPyf~ 208 (510)
...++|+.+.+ +-.+++++|--
T Consensus 317 ~~tl~~i~~l~-~~~~~~~~~sp 338 (439)
T PRK14328 317 EETLDLVKEVR-YDSAFTFIYSK 338 (439)
T ss_pred HHHHHHHHhcC-CCcccceEecC
Confidence 78889987764 34567776653
No 49
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.67 E-value=2e+02 Score=31.53 Aligned_cols=131 Identities=14% Similarity=0.169 Sum_probs=71.8
Q ss_pred eeeEEecCCCCCCCC----hHHHHHHH-HhCCCCEEEEccCCh-----HHHHHhhcC-CCEEEEEeccchhcccCCHHHH
Q 048257 23 GLGVNWGTVASHQLP----PKTTVKLL-KDNGILKVKLFDADN-----TILDALAGT-DIEVMLAVSNQELKTMTDFDKA 91 (510)
Q Consensus 23 ~~GvnYg~~~~n~ps----~~~vv~ll-k~~~i~~VRlY~~d~-----~vL~A~a~t-gi~V~vgV~n~~i~~~~~~~~A 91 (510)
.+|.|-+.||-|++. -.+..+.| +-.|+.+||+=..+| +++.+++.+ .+-=.+-+|.+ +-+
T Consensus 195 L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQ------sGs-- 266 (437)
T COG0621 195 LTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQ------SGS-- 266 (437)
T ss_pred EEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccc------cCC--
Confidence 468888888888763 23333333 225688999976654 688888864 22222222211 000
Q ss_pred HHHHHhhhccccCCCCceEEEEEecCccccccCCCCChhhHHHHHHHHHHHHHhcCCCCceEEecccccccccCCCCCCC
Q 048257 92 KEWVKANVTKYTNKGGVNIKFVAVGNEPFLKAYNGSHINTTFPALKNIQNALNDAGVGDTIKATVPFNADVYDSPDKNPY 171 (510)
Q Consensus 92 ~~Wv~~nv~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Lvpam~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~p 171 (510)
+ .|++ .+.| ..+....+..++.+|++.-. +-++|.+-.+ ||
T Consensus 267 d-----~ILk-----------------~M~R---~yt~e~~~~~i~k~R~~~Pd------~~i~tDiIVG--------FP 307 (437)
T COG0621 267 D-----RILK-----------------RMKR---GYTVEEYLEIIEKLRAARPD------IAISTDIIVG--------FP 307 (437)
T ss_pred H-----HHHH-----------------HhCC---CcCHHHHHHHHHHHHHhCCC------ceEeccEEEE--------CC
Confidence 0 0111 0223 23467778888888877643 4455543221 34
Q ss_pred CCCccccchhHHHHHHHHHHHHhcCCCceeecCcccc
Q 048257 172 PSAGKFRTDIFATMKEIVDFLAENKAPFIVNIYPFLS 208 (510)
Q Consensus 172 PS~g~F~~d~~~~~~~~ldFL~~t~sp~~vNiyPyf~ 208 (510)
= +-.+.....++|+.+.+ +=.+|+++|=.
T Consensus 308 g-------ETeedFe~tl~lv~e~~-fd~~~~F~YSp 336 (437)
T COG0621 308 G-------ETEEDFEETLDLVEEVR-FDRLHVFKYSP 336 (437)
T ss_pred C-------CCHHHHHHHHHHHHHhC-CCEEeeeecCC
Confidence 1 22345667788887664 44578877543
No 50
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.64 E-value=2.7e+02 Score=30.03 Aligned_cols=60 Identities=5% Similarity=0.019 Sum_probs=35.3
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCceEEecccccccccCCCCCCCCCCccccchhHHHHHHHHHHHHhcCCCceeecCcc
Q 048257 127 SHINTTFPALKNIQNALNDAGVGDTIKATVPFNADVYDSPDKNPYPSAGKFRTDIFATMKEIVDFLAENKAPFIVNIYPF 206 (510)
Q Consensus 127 ~~~~~Lvpam~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~pPS~g~F~~d~~~~~~~~ldFL~~t~sp~~vNiyPy 206 (510)
....+++.+++.+|+++ ..+.++|..-.+ || | +-.+.+...++|+.+.+ +-.+++++|
T Consensus 256 ~~~~~~~~~i~~lr~~~------pgi~i~~d~IvG--------fP---G----ET~edf~~tl~fi~~~~-~~~~~v~~y 313 (418)
T PRK14336 256 YTNQQYRELVERLKTAM------PDISLQTDLIVG--------FP---S----ETEEQFNQSYKLMADIG-YDAIHVAAY 313 (418)
T ss_pred CCHHHHHHHHHHHHhhC------CCCEEEEEEEEE--------CC---C----CCHHHHHHHHHHHHhcC-CCEEEeeec
Confidence 34677888888888753 225555443222 23 1 22356778899998765 334677765
Q ss_pred cc
Q 048257 207 LS 208 (510)
Q Consensus 207 f~ 208 (510)
-.
T Consensus 314 sp 315 (418)
T PRK14336 314 SP 315 (418)
T ss_pred CC
Confidence 54
No 51
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=32.38 E-value=76 Score=29.95 Aligned_cols=41 Identities=22% Similarity=0.330 Sum_probs=29.4
Q ss_pred HHHHHHHhCCCCEEEE----------ccCC--------------hHHHHHhhcCCCEEEEEeccc
Q 048257 40 TTVKLLKDNGILKVKL----------FDAD--------------NTILDALAGTDIEVMLAVSNQ 80 (510)
Q Consensus 40 ~vv~llk~~~i~~VRl----------Y~~d--------------~~vL~A~a~tgi~V~vgV~n~ 80 (510)
+..+.||..||+.|=+ |.++ ..+|+++...||+|+||++.+
T Consensus 24 ~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 24 EEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 4567788889987722 2121 257888889999999999854
No 52
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=31.94 E-value=3.1e+02 Score=29.58 Aligned_cols=60 Identities=8% Similarity=0.099 Sum_probs=35.2
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCceEEecccccccccCCCCCCCCCCccccchhHHHHHHHHHHHHhcCCCceeecCccc
Q 048257 128 HINTTFPALKNIQNALNDAGVGDTIKATVPFNADVYDSPDKNPYPSAGKFRTDIFATMKEIVDFLAENKAPFIVNIYPFL 207 (510)
Q Consensus 128 ~~~~Lvpam~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~pPS~g~F~~d~~~~~~~~ldFL~~t~sp~~vNiyPyf 207 (510)
...+++.+++.+|++. . .+.|++..- ++ || .+-.+.+...++|+.+.+ +-.+++++|-
T Consensus 268 ~~~~~~~~i~~l~~~~----~--~i~i~~~~I---~G-----~P-------gET~e~~~~t~~fl~~~~-~~~~~~~~~s 325 (430)
T TIGR01125 268 SGEQQLDFIERLREKC----P--DAVLRTTFI---VG-----FP-------GETEEDFQELLDFVEEGQ-FDRLGAFTYS 325 (430)
T ss_pred CHHHHHHHHHHHHHhC----C--CCeEeEEEE---EE-----CC-------CCCHHHHHHHHHHHHhcC-CCEEeeeecc
Confidence 4667777888777642 1 244444321 11 12 122356788999998765 4457888876
Q ss_pred cc
Q 048257 208 SL 209 (510)
Q Consensus 208 ~~ 209 (510)
.+
T Consensus 326 p~ 327 (430)
T TIGR01125 326 PE 327 (430)
T ss_pred CC
Confidence 54
No 53
>PLN02849 beta-glucosidase
Probab=31.46 E-value=1.2e+02 Score=33.69 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=50.1
Q ss_pred HHHHHHHHhCCCCEEEEc-------c-----CCh-------HHHHHhhcCCCEEEEEeccchhccc--------CCHHHH
Q 048257 39 KTTVKLLKDNGILKVKLF-------D-----ADN-------TILDALAGTDIEVMLAVSNQELKTM--------TDFDKA 91 (510)
Q Consensus 39 ~~vv~llk~~~i~~VRlY-------~-----~d~-------~vL~A~a~tgi~V~vgV~n~~i~~~--------~~~~~A 91 (510)
++.++||+.+|++.-|+= - .|+ +++.++...||+-+|.+.--+++.. .++..+
T Consensus 82 ~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v 161 (503)
T PLN02849 82 KEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRII 161 (503)
T ss_pred HHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHH
Confidence 467899999998887753 1 122 6889999999999999965444432 222222
Q ss_pred HHH---HHhhhccccCCCCceEEEEEecCccc
Q 048257 92 KEW---VKANVTKYTNKGGVNIKFVAVGNEPF 120 (510)
Q Consensus 92 ~~W---v~~nv~~y~p~~~~~I~~I~VGNEvl 120 (510)
+.+ .+.-+..| +++|+..+-=||+.
T Consensus 162 ~~F~~YA~~~f~~f----gDrVk~WiT~NEP~ 189 (503)
T PLN02849 162 KDFTAYADVCFREF----GNHVKFWTTINEAN 189 (503)
T ss_pred HHHHHHHHHHHHHh----cCcCCEEEEecchh
Confidence 211 22223333 46788888888875
No 54
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=30.50 E-value=1.2e+02 Score=32.00 Aligned_cols=73 Identities=16% Similarity=0.095 Sum_probs=51.1
Q ss_pred HHHHHhhcCCCEEEEEeccchhcccCCHHHHHHHHHhhhccccCCCCceEEEEEecCccccccCCCCChhhHHHHHHHHH
Q 048257 61 TILDALAGTDIEVMLAVSNQELKTMTDFDKAKEWVKANVTKYTNKGGVNIKFVAVGNEPFLKAYNGSHINTTFPALKNIQ 140 (510)
Q Consensus 61 ~vL~A~a~tgi~V~vgV~n~~i~~~~~~~~A~~Wv~~nv~~y~p~~~~~I~~I~VGNEvl~~~~~~~~~~~Lvpam~ni~ 140 (510)
+||+++-..|-.+.+|= ...+.| +++.|..|+.+.+..++ .+|.+|+--|.-.. ..+ -
T Consensus 176 ~VLkp~idsGkik~~Ge--~~~d~W-~ps~Aq~~men~lta~~----~~vdaVvA~nDgta-----------gGa----I 233 (341)
T COG4213 176 KVLKPLIDSGKIKVVGE--QWTDGW-LPSNAQQIMENLLTANY----NDIDAVVAPNDGTA-----------GGA----I 233 (341)
T ss_pred HHHHHHhhCCceEEeee--cccccc-CHHHHHHHHHHHHhccc----CceeEEEcCCCchh-----------HHH----H
Confidence 69999888885444663 334455 57888999999888875 56999877666321 112 2
Q ss_pred HHHHhcCCCCceEEe
Q 048257 141 NALNDAGVGDTIKAT 155 (510)
Q Consensus 141 ~aL~~~gl~~~IkVs 155 (510)
++|++.||.++++||
T Consensus 234 ~aL~a~Gl~g~vpVs 248 (341)
T COG4213 234 AALKAQGLAGKVPVS 248 (341)
T ss_pred HHHHhcccCCCCccc
Confidence 478889999888876
No 55
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.67 E-value=5.8e+02 Score=28.52 Aligned_cols=60 Identities=8% Similarity=0.053 Sum_probs=34.0
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCceEEecccccccccCCCCCCCCCCccccchhHHHHHHHHHHHHhcCCCceeecCcc
Q 048257 127 SHINTTFPALKNIQNALNDAGVGDTIKATVPFNADVYDSPDKNPYPSAGKFRTDIFATMKEIVDFLAENKAPFIVNIYPF 206 (510)
Q Consensus 127 ~~~~~Lvpam~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~pPS~g~F~~d~~~~~~~~ldFL~~t~sp~~vNiyPy 206 (510)
....+.+.+++.+|+++ ..|.++|..-++ || .+-.+.+...++|+.+.+ +-.+++|+|
T Consensus 344 ~t~e~~~~~v~~lr~~~------p~i~i~tdiIvG--------fP-------gET~edf~~Tl~~v~~l~-~d~~~~f~y 401 (509)
T PRK14327 344 YTRESYLELVRKIKEAI------PNVALTTDIIVG--------FP-------NETDEQFEETLSLYREVG-FDHAYTFIY 401 (509)
T ss_pred CCHHHHHHHHHHHHHhC------CCcEEeeeEEEe--------CC-------CCCHHHHHHHHHHHHHcC-CCeEEEeee
Confidence 34677778888887753 225555443221 23 122345677888887764 234666665
Q ss_pred cc
Q 048257 207 LS 208 (510)
Q Consensus 207 f~ 208 (510)
--
T Consensus 402 sp 403 (509)
T PRK14327 402 SP 403 (509)
T ss_pred eC
Confidence 44
No 56
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=29.42 E-value=7.3e+02 Score=27.66 Aligned_cols=62 Identities=24% Similarity=0.340 Sum_probs=40.8
Q ss_pred HHHHhhhccccCCCCceEEEEEecCcccccc-----CCC--CChhhHHHHHHH-HHHHHHhcCCCCceEEe
Q 048257 93 EWVKANVTKYTNKGGVNIKFVAVGNEPFLKA-----YNG--SHINTTFPALKN-IQNALNDAGVGDTIKAT 155 (510)
Q Consensus 93 ~Wv~~nv~~y~p~~~~~I~~I~VGNEvl~~~-----~~~--~~~~~Lvpam~n-i~~aL~~~gl~~~IkVs 155 (510)
..+.+-|+.|- +.+..|-+|.+.||+.... ... -.+.+..-.|++ +.-+|++++++..+||=
T Consensus 208 ~Y~vkfi~aY~-~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~ 277 (496)
T PF02055_consen 208 DYFVKFIQAYK-KEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKIL 277 (496)
T ss_dssp HHHHHHHHHHH-CTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEE
T ss_pred HHHHHHHHHHH-HCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 45666677774 3568899999999998621 111 235667777876 99999999995557763
No 57
>PRK07198 hypothetical protein; Validated
Probab=29.33 E-value=45 Score=35.96 Aligned_cols=37 Identities=32% Similarity=0.415 Sum_probs=33.2
Q ss_pred HHHHHhCCCCEE-EEccCChHHHHHhhcCCCEEEEEec
Q 048257 42 VKLLKDNGILKV-KLFDADNTILDALAGTDIEVMLAVS 78 (510)
Q Consensus 42 v~llk~~~i~~V-RlY~~d~~vL~A~a~tgi~V~vgV~ 78 (510)
+|+|+.+||++| ||....+.-+.++.+.||+|.=-|+
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 689999999999 9999999899999999999985554
No 58
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=29.27 E-value=3.8e+02 Score=32.64 Aligned_cols=95 Identities=16% Similarity=0.158 Sum_probs=57.0
Q ss_pred eeEEecCCCCC---CCChHH---HHHHHHhCCCCEEEEcc--CChHHHHHhhcCCCEEEEEeccch--------hccc-C
Q 048257 24 LGVNWGTVASH---QLPPKT---TVKLLKDNGILKVKLFD--ADNTILDALAGTDIEVMLAVSNQE--------LKTM-T 86 (510)
Q Consensus 24 ~GvnYg~~~~n---~ps~~~---vv~llk~~~i~~VRlY~--~d~~vL~A~a~tgi~V~vgV~n~~--------i~~~-~ 86 (510)
.|+|+-..... ..+++. .+++||+.|++.||+-. .++..+.++-..||-|+.-++.+. ...+ .
T Consensus 337 rGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~ 416 (1021)
T PRK10340 337 HGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITD 416 (1021)
T ss_pred EEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccC
Confidence 58886532111 234443 45688999999999964 246789999999999887543210 0011 1
Q ss_pred CH---HHHHHHHHhhhccccCCCCceEEEEEecCccc
Q 048257 87 DF---DKAKEWVKANVTKYTNKGGVNIKFVAVGNEPF 120 (510)
Q Consensus 87 ~~---~~A~~Wv~~nv~~y~p~~~~~I~~I~VGNEvl 120 (510)
++ ....+.++..|.... .-..|..-++|||.-
T Consensus 417 ~p~~~~~~~~~~~~mV~Rdr--NHPSIi~WslGNE~~ 451 (1021)
T PRK10340 417 DPQWEKVYVDRIVRHIHAQK--NHPSIIIWSLGNESG 451 (1021)
T ss_pred CHHHHHHHHHHHHHHHHhCC--CCCEEEEEECccCcc
Confidence 22 112233555666552 124688888999973
No 59
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=28.47 E-value=1e+02 Score=30.44 Aligned_cols=56 Identities=18% Similarity=0.354 Sum_probs=31.3
Q ss_pred ccchHHHhhHHHHHHHHHcCCCCCcEEecccccCCCCCC------CCCHHHHHHHHHhhhhhhhc
Q 048257 237 YTDVFDANYDTCVSALKAAGHGDMPVVVGEIGWPTDGDK------MANTANAFRYYSGLLPKLAA 295 (510)
Q Consensus 237 Y~n~fda~~Dav~~A~~k~g~~~~~vvVtETGWPS~G~~------~As~~na~~y~~~lv~~~~~ 295 (510)
|.+-|+..+.........++++..+|+. .|||.|.. ..+....+..+.++++.+..
T Consensus 27 yn~~f~~a~~r~aql~~~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 27 YNNSFEDALRRAAQLAHDLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 3344444333332223446777766665 69999985 13444555556666666654
No 60
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.87 E-value=1.2e+02 Score=29.90 Aligned_cols=81 Identities=20% Similarity=0.411 Sum_probs=49.9
Q ss_pred CCeeeEEecCCCCCCCChHHHHHHHHhCCCCEEEEccCC-----hHHHHHhhc--CCCEEEEEeccchhcccCCHHHHHH
Q 048257 21 VNGLGVNWGTVASHQLPPKTTVKLLKDNGILKVKLFDAD-----NTILDALAG--TDIEVMLAVSNQELKTMTDFDKAKE 93 (510)
Q Consensus 21 ~~~~GvnYg~~~~n~ps~~~vv~llk~~~i~~VRlY~~d-----~~vL~A~a~--tgi~V~vgV~n~~i~~~~~~~~A~~ 93 (510)
...+||.|-...-.++. .--+++|||+- ..+..+... .|+=++.-|-|+. +-.....
T Consensus 42 ~sTiGIDFk~kti~l~g-----------~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~-----Sfeni~~ 105 (207)
T KOG0078|consen 42 ISTIGIDFKIKTIELDG-----------KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEK-----SFENIRN 105 (207)
T ss_pred cceEEEEEEEEEEEeCC-----------eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchH-----HHHHHHH
Confidence 44577777644333333 12477889886 356766653 4555555555542 3355567
Q ss_pred HHHhhhccccCCCCceEEEEEecCcccc
Q 048257 94 WVKANVTKYTNKGGVNIKFVAVGNEPFL 121 (510)
Q Consensus 94 Wv~~nv~~y~p~~~~~I~~I~VGNEvl~ 121 (510)
|++ +|..+-+ ..|.-|.|||-.=.
T Consensus 106 W~~-~I~e~a~---~~v~~~LvGNK~D~ 129 (207)
T KOG0078|consen 106 WIK-NIDEHAS---DDVVKILVGNKCDL 129 (207)
T ss_pred HHH-HHHhhCC---CCCcEEEeeccccc
Confidence 875 6777753 57889999998643
No 61
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=27.65 E-value=1.2e+02 Score=26.55 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCCEEEEc--cCC---hHHHHHhhcCCCEEEE
Q 048257 39 KTTVKLLKDNGILKVKLF--DAD---NTILDALAGTDIEVML 75 (510)
Q Consensus 39 ~~vv~llk~~~i~~VRlY--~~d---~~vL~A~a~tgi~V~v 75 (510)
+++.+.++.+|++.|+++ +.. ..+|++|+..||++.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 345566777999999988 333 3799999999998653
No 62
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=27.54 E-value=42 Score=29.57 Aligned_cols=27 Identities=26% Similarity=0.456 Sum_probs=20.3
Q ss_pred ChHHHHHHHHhCC---CCEEEEccCChHHH
Q 048257 37 PPKTTVKLLKDNG---ILKVKLFDADNTIL 63 (510)
Q Consensus 37 s~~~vv~llk~~~---i~~VRlY~~d~~vL 63 (510)
.|+++..+|+.+. -+++||||+|..+|
T Consensus 2 ~pe~a~plLrrL~~Pt~~RARlyd~dG~Ll 31 (112)
T PF13756_consen 2 NPERARPLLRRLISPTRTRARLYDPDGNLL 31 (112)
T ss_pred CHHHHHHHHHHhCCCCCceEEEECCCCCEE
Confidence 4678888887753 37999999986543
No 63
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.09 E-value=5.2e+02 Score=27.92 Aligned_cols=59 Identities=10% Similarity=0.077 Sum_probs=34.5
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCceEEecccccccccCCCCCCCCCCccccchhHHHHHHHHHHHHhcCCCceeecCccc
Q 048257 128 HINTTFPALKNIQNALNDAGVGDTIKATVPFNADVYDSPDKNPYPSAGKFRTDIFATMKEIVDFLAENKAPFIVNIYPFL 207 (510)
Q Consensus 128 ~~~~Lvpam~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~pPS~g~F~~d~~~~~~~~ldFL~~t~sp~~vNiyPyf 207 (510)
...+...+++.+|+.+ ..+.|++..-++ || .+-.+.+...++|+.+.+ +-.+++++|-
T Consensus 273 ~~~~~~~~i~~lr~~~------~~i~i~~d~IvG--------fP-------gET~edf~~tl~fi~~~~-~~~~~~~~~s 330 (434)
T PRK14330 273 TREEYLELIEKIRSKV------PDASISSDIIVG--------FP-------TETEEDFMETVDLVEKAQ-FERLNLAIYS 330 (434)
T ss_pred CHHHHHHHHHHHHHhC------CCCEEEEEEEEE--------CC-------CCCHHHHHHHHHHHHhcC-CCEEeeeecc
Confidence 4666777777777642 125566553222 23 122356788999998776 3346666655
Q ss_pred c
Q 048257 208 S 208 (510)
Q Consensus 208 ~ 208 (510)
.
T Consensus 331 p 331 (434)
T PRK14330 331 P 331 (434)
T ss_pred C
Confidence 4
No 64
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=26.78 E-value=3.1e+02 Score=28.54 Aligned_cols=77 Identities=13% Similarity=0.185 Sum_probs=39.4
Q ss_pred cCCCEEEEEec--cc---hhccc-CCHHHHHHHHHhhhccccCCCCceEEEEEecCcccccc-CCCCChhhHHHHHHHHH
Q 048257 68 GTDIEVMLAVS--NQ---ELKTM-TDFDKAKEWVKANVTKYTNKGGVNIKFVAVGNEPFLKA-YNGSHINTTFPALKNIQ 140 (510)
Q Consensus 68 ~tgi~V~vgV~--n~---~i~~~-~~~~~A~~Wv~~nv~~y~p~~~~~I~~I~VGNEvl~~~-~~~~~~~~Lvpam~ni~ 140 (510)
+.+++|++.|. +. ....+ +++..-+..++. |..++- .-.+.+|-+==|..... ........++..|+++|
T Consensus 68 ~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~-iv~~l~--~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr 144 (362)
T cd02872 68 NPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKS-AIAFLR--KYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELR 144 (362)
T ss_pred CCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHH-HHHHHH--HcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHH
Confidence 36899998884 22 22334 444433333332 222221 12344554433332110 00112457899999999
Q ss_pred HHHHhcC
Q 048257 141 NALNDAG 147 (510)
Q Consensus 141 ~aL~~~g 147 (510)
++|++.+
T Consensus 145 ~~l~~~~ 151 (362)
T cd02872 145 EAFEPEA 151 (362)
T ss_pred HHHHhhC
Confidence 9999873
No 65
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=26.57 E-value=1.1e+02 Score=29.79 Aligned_cols=39 Identities=31% Similarity=0.428 Sum_probs=35.1
Q ss_pred HHHHHhCCCCEEEEccCChHHHHHhhcCCCEEEEEeccc
Q 048257 42 VKLLKDNGILKVKLFDADNTILDALAGTDIEVMLAVSNQ 80 (510)
Q Consensus 42 v~llk~~~i~~VRlY~~d~~vL~A~a~tgi~V~vgV~n~ 80 (510)
+|+|+..||++|||-..+|.-..++.+.||+|.=-++..
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecC
Confidence 578999999999999999989999999999999888764
No 66
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=26.55 E-value=1.3e+02 Score=33.81 Aligned_cols=73 Identities=15% Similarity=0.284 Sum_probs=48.8
Q ss_pred cCCCCCcEEecccccCCCCCCC----------CCHHHHHHHHHhhhhhhhccCCCCCCCCCcceEEEEeecccC-ccCCC
Q 048257 255 AGHGDMPVVVGEIGWPTDGDKM----------ANTANAFRYYSGLLPKLAADKGTPLRPGSYIEVYMFSLFDED-SKSID 323 (510)
Q Consensus 255 ~g~~~~~vvVtETGWPS~G~~~----------As~~na~~y~~~lv~~~~~~~GTP~rpg~~~~~yiF~lFDE~-~K~~~ 323 (510)
-.|+|.+|.|+|-|-+...+.. .=++..+.|++.+.+.+.. .|. + ..-+|..+|-|-- |..
T Consensus 403 ~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgv----n-v~GYf~WSLmDnfEw~~-- 474 (524)
T KOG0626|consen 403 DKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGV----N-VKGYFVWSLLDNFEWLD-- 474 (524)
T ss_pred hhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCC----c-eeeEEEeEcccchhhhc--
Confidence 3489999999999999875431 2345666777776666543 121 1 2358889988744 553
Q ss_pred CCCccceeeeeecC
Q 048257 324 PGNFEKHWGIFTYD 337 (510)
Q Consensus 324 ~g~~E~~wGlf~~d 337 (510)
+..--|||++-|
T Consensus 475 --Gy~~RFGlyyVD 486 (524)
T KOG0626|consen 475 --GYKVRFGLYYVD 486 (524)
T ss_pred --CcccccccEEEe
Confidence 467889999854
No 67
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=25.31 E-value=3.9e+02 Score=28.92 Aligned_cols=95 Identities=20% Similarity=0.276 Sum_probs=49.5
Q ss_pred HHHHHhhcCCCEEEEEeccchh----------------ccc-CC-H-HHHHHHHHhhhccccCCCCceEEEEEecCcccc
Q 048257 61 TILDALAGTDIEVMLAVSNQEL----------------KTM-TD-F-DKAKEWVKANVTKYTNKGGVNIKFVAVGNEPFL 121 (510)
Q Consensus 61 ~vL~A~a~tgi~V~vgV~n~~i----------------~~~-~~-~-~~A~~Wv~~nv~~y~p~~~~~I~~I~VGNEvl~ 121 (510)
-+|++++..|++.+++..|.-. ..+ .+ . ..| ..+.+-++ ++-.-+.+|++|.-=||+-.
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA-~YLa~Vv~-~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFA-DYLADVVK-HYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHH-HHHHHHHH-HHHCTT--EEEEE--S-TTS
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHH-HHHHHHHH-HHHhcCCccceeCCcCCCCC
Confidence 4888888899998888865311 112 11 1 122 22322222 22223579999999999987
Q ss_pred ccCCC------CChhhHHHHHHHHHHHHHhcCCCCceEEecccc
Q 048257 122 KAYNG------SHINTTFPALKNIQNALNDAGVGDTIKATVPFN 159 (510)
Q Consensus 122 ~~~~~------~~~~~Lvpam~ni~~aL~~~gl~~~IkVsT~~~ 159 (510)
.+... -...+....|+.|+.+|+++||..+| ..+++
T Consensus 186 ~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I--~~~Ea 227 (384)
T PF14587_consen 186 NWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKI--SACEA 227 (384)
T ss_dssp -GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EE--EEEEE
T ss_pred CCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceE--Eecch
Confidence 65211 13677889999999999999997544 44444
No 68
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=24.36 E-value=1.5e+02 Score=26.82 Aligned_cols=39 Identities=26% Similarity=0.297 Sum_probs=36.2
Q ss_pred HHHHHHHhCCCCEEEEccCChHHHHHhhcCCCEEEEEec
Q 048257 40 TTVKLLKDNGILKVKLFDADNTILDALAGTDIEVMLAVS 78 (510)
Q Consensus 40 ~vv~llk~~~i~~VRlY~~d~~vL~A~a~tgi~V~vgV~ 78 (510)
.+.++|+.+|++.|=....-+..+++|++.||+|..+-.
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 578999999999999988889999999999999999977
No 69
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=24.28 E-value=3.7e+02 Score=27.60 Aligned_cols=94 Identities=14% Similarity=0.221 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcCCCCceEEecccccccccCCCCCCCCCCccccchhHHHHHHHHHHHHhcCCCceeecCccccccCCC
Q 048257 134 PALKNIQNALNDAGVGDTIKATVPFNADVYDSPDKNPYPSAGKFRTDIFATMKEIVDFLAENKAPFIVNIYPFLSLYGND 213 (510)
Q Consensus 134 pam~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~pPS~g~F~~d~~~~~~~~ldFL~~t~sp~~vNiyPyf~~~~~~ 213 (510)
.+.++++...++.|+.+ +|+.... ... .|. .+.+.|+..++.+.+-|+.++.=+....
T Consensus 113 ~a~~E~er~v~~~gf~g-~~l~p~~-~~~--------~~~--------~~~~~pi~~~a~~~gvpv~ihtG~~~~~---- 170 (293)
T COG2159 113 AAAEELERRVRELGFVG-VKLHPVA-QGF--------YPD--------DPRLYPIYEAAEELGVPVVIHTGAGPGG---- 170 (293)
T ss_pred HHHHHHHHHHHhcCceE-EEecccc-cCC--------CCC--------ChHHHHHHHHHHHcCCCEEEEeCCCCCC----
Confidence 36677788888878754 6653221 111 121 1346789999999999999855433321
Q ss_pred CCccccccccCCCceeecCCCccccchHHHhhHHHHHHHHHcCCCCCcEEecccc--cCCCC
Q 048257 214 DFPVDYAFFDGGKSIVDSVTGNKYTDVFDANYDTCVSALKAAGHGDMPVVVGEIG--WPTDG 273 (510)
Q Consensus 214 ~i~l~~AlF~~~~~~v~D~~~~~Y~n~fda~~Dav~~A~~k~g~~~~~vvVtETG--WPS~G 273 (510)
..+.... .++ -.+|.+ ..+ ||+++||+++-| +|..-
T Consensus 171 -~~~~~~~--------~~p----------~~~~~v---a~~--fP~l~IVl~H~G~~~p~~~ 208 (293)
T COG2159 171 -AGLEKGH--------SDP----------LYLDDV---ARK--FPELKIVLGHMGEDYPWEL 208 (293)
T ss_pred -cccccCC--------CCc----------hHHHHH---HHH--CCCCcEEEEecCCCCchhH
Confidence 1111000 010 123333 122 799999999999 88763
No 70
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.22 E-value=5.6e+02 Score=27.89 Aligned_cols=59 Identities=5% Similarity=-0.019 Sum_probs=34.3
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCceEEecccccccccCCCCCCCCCCccccchhHHHHHHHHHHHHhcCCCceeecCcc
Q 048257 127 SHINTTFPALKNIQNALNDAGVGDTIKATVPFNADVYDSPDKNPYPSAGKFRTDIFATMKEIVDFLAENKAPFIVNIYPF 206 (510)
Q Consensus 127 ~~~~~Lvpam~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~pPS~g~F~~d~~~~~~~~ldFL~~t~sp~~vNiyPy 206 (510)
....+...+++.+|++. ..+.+++..-.+ ||= +-.+.+...++||.+.+ +-.+++|+|
T Consensus 281 ~t~e~~~~~v~~lr~~~------~~i~i~~d~IvG--------~Pg-------ET~ed~~~tl~~l~~~~-~~~~~~f~y 338 (446)
T PRK14337 281 YDMARYLDIVTDLRAAR------PDIALTTDLIVG--------FPG-------ETEEDFEQTLEAMRTVG-FASSFSFCY 338 (446)
T ss_pred CCHHHHHHHHHHHHHhC------CCCeEEEeEEEE--------CCC-------CCHHHHHHHHHHHHhcC-CCeeEEEec
Confidence 34667777777777652 125555553222 231 22356778899998765 445666665
Q ss_pred c
Q 048257 207 L 207 (510)
Q Consensus 207 f 207 (510)
-
T Consensus 339 s 339 (446)
T PRK14337 339 S 339 (446)
T ss_pred C
Confidence 4
No 71
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=23.92 E-value=6.8e+02 Score=25.98 Aligned_cols=134 Identities=16% Similarity=0.214 Sum_probs=70.5
Q ss_pred HHHHHHhCCCCEEEEccCC------------hHHHHHhhc--CCCEEEEEeccchhcccCCHHHHHHHHHhhhccccCCC
Q 048257 41 TVKLLKDNGILKVKLFDAD------------NTILDALAG--TDIEVMLAVSNQELKTMTDFDKAKEWVKANVTKYTNKG 106 (510)
Q Consensus 41 vv~llk~~~i~~VRlY~~d------------~~vL~A~a~--tgi~V~vgV~n~~i~~~~~~~~A~~Wv~~nv~~y~p~~ 106 (510)
+++.++..|++.|-|-+.| .+++++++. .++.|-+-.++.. ........+.+....-+ +
T Consensus 99 ~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~----g~~e~l~~l~~aG~dv~-~-- 171 (302)
T TIGR00510 99 LAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDFR----GNIAALDILLDAPPDVY-N-- 171 (302)
T ss_pred HHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCccc----CCHHHHHHHHHcCchhh-c--
Confidence 4455667899988777321 257778775 3555555444211 11222222222212111 0
Q ss_pred CceEEEEEecCcccccc-CCCCChhhHHHHHHHHHHHHHhcCCCCceEEecccccccccCCCCCCCCCCccccchhHHHH
Q 048257 107 GVNIKFVAVGNEPFLKA-YNGSHINTTFPALKNIQNALNDAGVGDTIKATVPFNADVYDSPDKNPYPSAGKFRTDIFATM 185 (510)
Q Consensus 107 ~~~I~~I~VGNEvl~~~-~~~~~~~~Lvpam~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~pPS~g~F~~d~~~~~ 185 (510)
.++. .| +.++.. -......+.+..++.+|+.. ..++++|..-.+. +.+ .+.+
T Consensus 172 -hnlE--t~--~~l~~~vrr~~t~e~~Le~l~~ak~~~------pgi~~~TgiIVGl-GET---------------eee~ 224 (302)
T TIGR00510 172 -HNLE--TV--ERLTPFVRPGATYRWSLKLLERAKEYL------PNLPTKSGIMVGL-GET---------------NEEI 224 (302)
T ss_pred -cccc--ch--HHHHHHhCCCCCHHHHHHHHHHHHHhC------CCCeecceEEEEC-CCC---------------HHHH
Confidence 1222 11 233321 11234666777777777643 2366666655554 443 2567
Q ss_pred HHHHHHHHhcCCCceeecCccccc
Q 048257 186 KEIVDFLAENKAPFIVNIYPFLSL 209 (510)
Q Consensus 186 ~~~ldFL~~t~sp~~vNiyPyf~~ 209 (510)
.+.++||.+.+ +-.+++-+|+.-
T Consensus 225 ~etl~~Lrelg-~d~v~igqYl~p 247 (302)
T TIGR00510 225 KQTLKDLRDHG-VTMVTLGQYLRP 247 (302)
T ss_pred HHHHHHHHhcC-CCEEEeecccCC
Confidence 78889998774 556788888864
No 72
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=23.74 E-value=1.5e+02 Score=26.45 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCCEEEEc--c--------CC---hHHHHHhhcCCCEEEE
Q 048257 39 KTTVKLLKDNGILKVKLF--D--------AD---NTILDALAGTDIEVML 75 (510)
Q Consensus 39 ~~vv~llk~~~i~~VRlY--~--------~d---~~vL~A~a~tgi~V~v 75 (510)
+++++.++.+|++.|+++ . .. ...|++|+..||+|..
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 445666777899988887 3 33 3799999999999753
No 73
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.60 E-value=9.8e+02 Score=26.11 Aligned_cols=78 Identities=6% Similarity=0.046 Sum_probs=43.6
Q ss_pred EEEEEec-----CccccccCCCCChhhHHHHHHHHHHHHHhcCCCCceEEecccccccccCCCCCCCCCCccccchhHHH
Q 048257 110 IKFVAVG-----NEPFLKAYNGSHINTTFPALKNIQNALNDAGVGDTIKATVPFNADVYDSPDKNPYPSAGKFRTDIFAT 184 (510)
Q Consensus 110 I~~I~VG-----NEvl~~~~~~~~~~~Lvpam~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~pPS~g~F~~d~~~~ 184 (510)
..+|.+| +++|-+-..+....+...+++.+|++. ..+.+.|.. +-. || .+-.+.
T Consensus 261 ~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~------p~i~i~td~----IvG----fP-------gET~ed 319 (449)
T PRK14332 261 CPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIV------PDVGITTDI----IVG----FP-------NETEEE 319 (449)
T ss_pred cceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhC------CCCEEEEEE----Eee----CC-------CCCHHH
Confidence 3567776 344322122345778888888888753 124455432 221 23 122356
Q ss_pred HHHHHHHHHhcCCCceeecCccccc
Q 048257 185 MKEIVDFLAENKAPFIVNIYPFLSL 209 (510)
Q Consensus 185 ~~~~ldFL~~t~sp~~vNiyPyf~~ 209 (510)
+...++|+.+.+= -.+++|+|-..
T Consensus 320 f~~tl~~v~~l~~-~~~~~f~ys~~ 343 (449)
T PRK14332 320 FEDTLAVVREVQF-DMAFMFKYSER 343 (449)
T ss_pred HHHHHHHHHhCCC-CEEEEEEecCC
Confidence 7788899877653 35777776543
No 74
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=23.50 E-value=2.3e+02 Score=31.25 Aligned_cols=77 Identities=6% Similarity=0.178 Sum_probs=48.9
Q ss_pred HHHHHHHHhCCCCEEEEc-------c-----CC-------hHHHHHhhcCCCEEEEEeccchhccc-------CCHHHHH
Q 048257 39 KTTVKLLKDNGILKVKLF-------D-----AD-------NTILDALAGTDIEVMLAVSNQELKTM-------TDFDKAK 92 (510)
Q Consensus 39 ~~vv~llk~~~i~~VRlY-------~-----~d-------~~vL~A~a~tgi~V~vgV~n~~i~~~-------~~~~~A~ 92 (510)
++.++||+.+|++.-|+= = .+ .+++.++...||+-+|.+.--+++.. .+++.++
T Consensus 56 ~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~GGW~n~~~v~ 135 (467)
T TIGR01233 56 PVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSNGDFLNRENIE 135 (467)
T ss_pred HHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHcCCCCCHHHHH
Confidence 577899999988877763 1 12 26888999999999999976555532 1222221
Q ss_pred ---HHHHhhhccccCCCCceEEEEEecCccc
Q 048257 93 ---EWVKANVTKYTNKGGVNIKFVAVGNEPF 120 (510)
Q Consensus 93 ---~Wv~~nv~~y~p~~~~~I~~I~VGNEvl 120 (510)
+..+.-+..| + . |+.-+-=||+.
T Consensus 136 ~F~~YA~~~f~~f---g-d-Vk~WiT~NEP~ 161 (467)
T TIGR01233 136 HFIDYAAFCFEEF---P-E-VNYWTTFNEIG 161 (467)
T ss_pred HHHHHHHHHHHHh---C-C-CCEEEEecchh
Confidence 1122223333 2 4 77877788875
No 75
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.14 E-value=7.4e+02 Score=26.73 Aligned_cols=58 Identities=3% Similarity=0.011 Sum_probs=33.6
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCceEEecccccccccCCCCCCCCCCccccchhHHHHHHHHHHHHhcCCCceeecCccc
Q 048257 128 HINTTFPALKNIQNALNDAGVGDTIKATVPFNADVYDSPDKNPYPSAGKFRTDIFATMKEIVDFLAENKAPFIVNIYPFL 207 (510)
Q Consensus 128 ~~~~Lvpam~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~pPS~g~F~~d~~~~~~~~ldFL~~t~sp~~vNiyPyf 207 (510)
...+.+.+++.+|++. ..+.++|.. +-. || .+-.+.+...++|+.+.+- -.+++|+|-
T Consensus 263 t~~~~~~~v~~lr~~~------p~i~i~~d~----IvG----fP-------gETeedf~~Tl~fl~~l~~-~~~~~f~~s 320 (420)
T PRK14339 263 TKEWFLNRAEKLRALV------PEVSISTDI----IVG----FP-------GESDKDFEDTMDVLEKVRF-EQIFSFKYS 320 (420)
T ss_pred CHHHHHHHHHHHHHHC------CCCEEEEEE----EEE----CC-------CCCHHHHHHHHHHHHhcCC-CEEeeEecC
Confidence 4677778888887653 125556532 221 23 1223567888999887652 235776643
No 76
>PLN00196 alpha-amylase; Provisional
Probab=21.78 E-value=3.3e+02 Score=29.71 Aligned_cols=57 Identities=25% Similarity=0.448 Sum_probs=35.3
Q ss_pred eeEEecCCCCCCCChHHH---HHHHHhCCCCEE-----------------EEccCCh----------HHHHHhhcCCCEE
Q 048257 24 LGVNWGTVASHQLPPKTT---VKLLKDNGILKV-----------------KLFDADN----------TILDALAGTDIEV 73 (510)
Q Consensus 24 ~GvnYg~~~~n~ps~~~v---v~llk~~~i~~V-----------------RlY~~d~----------~vL~A~a~tgi~V 73 (510)
-|++|-....+.-.-..+ +.-|+.+||+.| +.|+.|+ ++++++.+.||+|
T Consensus 29 Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkV 108 (428)
T PLN00196 29 QGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQV 108 (428)
T ss_pred EeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEE
Confidence 488885432221111223 346788888887 4455552 4677888899999
Q ss_pred EEEe-ccc
Q 048257 74 MLAV-SNQ 80 (510)
Q Consensus 74 ~vgV-~n~ 80 (510)
++-+ .|.
T Consensus 109 ilDvV~NH 116 (428)
T PLN00196 109 IADIVINH 116 (428)
T ss_pred EEEECccC
Confidence 9986 443
No 77
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=21.20 E-value=1.3e+02 Score=33.19 Aligned_cols=73 Identities=15% Similarity=0.293 Sum_probs=0.0
Q ss_pred CCcEEecccccCCCCCCCCC----HHHHHHHHHhhhhhhhc---cCCCCCCCCCcceEEEEeeccc-CccCCCCCCccce
Q 048257 259 DMPVVVGEIGWPTDGDKMAN----TANAFRYYSGLLPKLAA---DKGTPLRPGSYIEVYMFSLFDE-DSKSIDPGNFEKH 330 (510)
Q Consensus 259 ~~~vvVtETGWPS~G~~~As----~~na~~y~~~lv~~~~~---~~GTP~rpg~~~~~yiF~lFDE-~~K~~~~g~~E~~ 330 (510)
++||+|+|-|.......... -+.--.|+++-+..+.. ..|-+.| | +|.-++.|- .|. .|+.++.
T Consensus 368 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~-G----Y~~WSl~DnfEw~---~G~y~~R 439 (477)
T PRK15014 368 QKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLM-G----YTPWGCIDCVSFT---TGQYSKR 439 (477)
T ss_pred CCCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEE-E----Eeeccchhhhccc---CCCccCc
Q ss_pred eeeeecCCC
Q 048257 331 WGIFTYDGQ 339 (510)
Q Consensus 331 wGlf~~d~~ 339 (510)
|||++-|..
T Consensus 440 fGl~~VD~~ 448 (477)
T PRK15014 440 YGFIYVNKH 448 (477)
T ss_pred cceEEECCC
No 78
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=20.85 E-value=2.1e+02 Score=31.68 Aligned_cols=78 Identities=14% Similarity=0.186 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCCCEEEEc---------c----CCh-------HHHHHhhcCCCEEEEEeccchhccc-C-------CHHH
Q 048257 39 KTTVKLLKDNGILKVKLF---------D----ADN-------TILDALAGTDIEVMLAVSNQELKTM-T-------DFDK 90 (510)
Q Consensus 39 ~~vv~llk~~~i~~VRlY---------~----~d~-------~vL~A~a~tgi~V~vgV~n~~i~~~-~-------~~~~ 90 (510)
++.++||+++|++.-|+= + .++ +++.+|...||+-+|.+.--+++.. . +++.
T Consensus 76 ~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~ 155 (478)
T PRK09593 76 KEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKM 155 (478)
T ss_pred HHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHH
Confidence 578999999998888763 1 132 5888999999999999965555432 1 2222
Q ss_pred HH---HHHHhhhccccCCCCceEEEEEecCccc
Q 048257 91 AK---EWVKANVTKYTNKGGVNIKFVAVGNEPF 120 (510)
Q Consensus 91 A~---~Wv~~nv~~y~p~~~~~I~~I~VGNEvl 120 (510)
++ +..+.-+..| +++|+..+-=||+.
T Consensus 156 v~~F~~YA~~~~~~f----gdrVk~WiT~NEP~ 184 (478)
T PRK09593 156 VGFYERLCRTLFTRY----KGLVKYWLTFNEIN 184 (478)
T ss_pred HHHHHHHHHHHHHHh----cCcCCEEEeecchh
Confidence 21 1122223334 46788888888865
No 79
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=20.66 E-value=1.2e+02 Score=31.46 Aligned_cols=220 Identities=19% Similarity=0.145 Sum_probs=109.9
Q ss_pred HHHHHhhcCCCEEEEE--eccchhccc--C----C-------HHHHHHHHHhhhccccCCCC-ceEEEEEecCccccccC
Q 048257 61 TILDALAGTDIEVMLA--VSNQELKTM--T----D-------FDKAKEWVKANVTKYTNKGG-VNIKFVAVGNEPFLKAY 124 (510)
Q Consensus 61 ~vL~A~a~tgi~V~vg--V~n~~i~~~--~----~-------~~~A~~Wv~~nv~~y~p~~~-~~I~~I~VGNEvl~~~~ 124 (510)
.+++-++..||+|--- ||-...+.+ . + ....+++|++-+..|. + .+|...=|=||++....
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y~---~~g~i~~WDVvNE~i~~~~ 139 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRYK---DKGRIYAWDVVNEAIDDDG 139 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHTT---TTTTESEEEEEES-B-TTS
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHhc---cccceEEEEEeeecccCCC
Confidence 4667667788887633 344333332 1 1 2233466766666662 2 37999988899997532
Q ss_pred C-----CCChh------hHHHHHHHHHHHHHhcCCCCceEEecccccccccCCCCCCCCCCccccchhHHHHHHHHHHHH
Q 048257 125 N-----GSHIN------TTFPALKNIQNALNDAGVGDTIKATVPFNADVYDSPDKNPYPSAGKFRTDIFATMKEIVDFLA 193 (510)
Q Consensus 125 ~-----~~~~~------~Lvpam~ni~~aL~~~gl~~~IkVsT~~~~~vl~~s~~~~pPS~g~F~~d~~~~~~~~ldFL~ 193 (510)
. ...+. .+..+.+-.|++.. .+|.- ++ -|+...+ +-...+..+|+.|.
T Consensus 140 ~~~~~r~~~~~~~lG~~yi~~aF~~A~~~~P------~a~L~-------~N-Dy~~~~~-------~k~~~~~~lv~~l~ 198 (320)
T PF00331_consen 140 NPGGLRDSPWYDALGPDYIADAFRAAREADP------NAKLF-------YN-DYNIESP-------AKRDAYLNLVKDLK 198 (320)
T ss_dssp SSSSBCTSHHHHHHTTCHHHHHHHHHHHHHT------TSEEE-------EE-ESSTTST-------HHHHHHHHHHHHHH
T ss_pred ccccccCChhhhcccHhHHHHHHHHHHHhCC------CcEEE-------ec-cccccch-------HHHHHHHHHHHHHH
Confidence 0 01122 34445555555443 23321 11 1211111 11245667777776
Q ss_pred hcCCCceeecCccccccCCCCCccccccccCCCceeecCCCccccchHHHhhHHHHHHHHHcCCCCCcEEecccccCCCC
Q 048257 194 ENKAPFIVNIYPFLSLYGNDDFPVDYAFFDGGKSIVDSVTGNKYTDVFDANYDTCVSALKAAGHGDMPVVVGEIGWPTDG 273 (510)
Q Consensus 194 ~t~sp~~vNiyPyf~~~~~~~i~l~~AlF~~~~~~v~D~~~~~Y~n~fda~~Dav~~A~~k~g~~~~~vvVtETGWPS~G 273 (510)
+.+-|+ |=--||.+ +.. ... .+.+..+|+++.--+++|.|||--=....
T Consensus 199 ~~gvpI------------------dgIG~Q~H---~~~--------~~~--~~~i~~~l~~~~~~Gl~i~ITElDv~~~~ 247 (320)
T PF00331_consen 199 ARGVPI------------------DGIGLQSH---FDA--------GYP--PEQIWNALDRFASLGLPIHITELDVRDDD 247 (320)
T ss_dssp HTTHCS-------------------EEEEEEE---EET--------TSS--HHHHHHHHHHHHTTTSEEEEEEEEEESSS
T ss_pred hCCCcc------------------ceechhhc---cCC--------CCC--HHHHHHHHHHHHHcCCceEEEeeeecCCC
Confidence 555442 11112211 111 111 45555566666555699999998654443
Q ss_pred CC--CCCHHHHHHHHHhhhhhhhccCCCCCCCCCcceEEEEeecccC-ccCCCCCCccceeeeeecCCCCccc
Q 048257 274 DK--MANTANAFRYYSGLLPKLAADKGTPLRPGSYIEVYMFSLFDED-SKSIDPGNFEKHWGIFTYDGQPKFP 343 (510)
Q Consensus 274 ~~--~As~~na~~y~~~lv~~~~~~~GTP~rpg~~~~~yiF~lFDE~-~K~~~~g~~E~~wGlf~~d~~~ky~ 343 (510)
.. ....+.++.+.+++++.+.+.. |.....+.+.-+.|.. |.+.. .-.+=+||+.|.+||-.
T Consensus 248 ~~~~~~~~~~qA~~~~~~~~~~~~~~-----~~~v~git~Wg~~D~~sW~~~~---~~~~~~lfd~~~~~Kpa 312 (320)
T PF00331_consen 248 NPPDAEEEEAQAEYYRDFLTACFSHP-----PAAVEGITWWGFTDGYSWRPDT---PPDRPLLFDEDYQPKPA 312 (320)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTT-----HCTEEEEEESSSBTTGSTTGGH---SEG--SSB-TTSBB-HH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhCC-----ccCCCEEEEECCCCCCcccCCC---CCCCCeeECCCcCCCHH
Confidence 32 2446778889999999888641 0112335555566644 66420 01233688888888753
No 80
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=20.32 E-value=1.9e+02 Score=26.51 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCCEEEEc--c--------CCh---HHHHHhhcCCCEEEE
Q 048257 39 KTTVKLLKDNGILKVKLF--D--------ADN---TILDALAGTDIEVML 75 (510)
Q Consensus 39 ~~vv~llk~~~i~~VRlY--~--------~d~---~vL~A~a~tgi~V~v 75 (510)
+++++.++.+|++.|+++ + ..+ ..|++|+..||+|..
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~ 109 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 109 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEE
Confidence 445667778999988887 3 332 699999999999653
Done!